Citrus Sinensis ID: 000099
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2240 | 2.2.26 [Sep-21-2011] | |||||||
| Q6EVK6 | 2193 | ATP-dependent helicase BR | yes | no | 0.968 | 0.989 | 0.673 | 0.0 | |
| O94421 | 1680 | SWI/SNF chromatin-remodel | yes | no | 0.326 | 0.435 | 0.365 | 1e-145 | |
| P25439 | 1638 | ATP-dependent helicase br | yes | no | 0.253 | 0.346 | 0.424 | 1e-140 | |
| Q9UTN6 | 1199 | Chromatin structure-remod | no | no | 0.322 | 0.602 | 0.385 | 1e-138 | |
| Q6DIC0 | 1577 | Probable global transcrip | yes | no | 0.241 | 0.343 | 0.439 | 1e-135 | |
| P51532 | 1647 | Transcription activator B | no | no | 0.254 | 0.346 | 0.411 | 1e-135 | |
| P51531 | 1590 | Probable global transcrip | yes | no | 0.241 | 0.340 | 0.439 | 1e-135 | |
| A7Z019 | 1606 | Transcription activator B | no | no | 0.254 | 0.354 | 0.424 | 1e-135 | |
| Q8K1P7 | 1613 | Transcription activator B | yes | no | 0.254 | 0.353 | 0.427 | 1e-135 | |
| Q3TKT4 | 1613 | Transcription activator B | no | no | 0.254 | 0.353 | 0.427 | 1e-135 |
| >sp|Q6EVK6|BRM_ARATH ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 2762 bits (7160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1520/2257 (67%), Positives = 1750/2257 (77%), Gaps = 88/2257 (3%)
Query: 3 SGGGPSRNRAASTS--SAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQILRK 60
SGGGP+RN A + +A++ S++S + S+ + QQQQQ QQQQ QQQ R
Sbjct: 6 SGGGPARNPAMGPAGRTASTSSAASPSSSSSSVQQQQQQQQQQQQQQQLASRQQQQQHRN 65
Query: 61 PDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAISQESQNRSQGV 120
D NE + AYQ G + G+MGGGNFAS PGSMQ PQQSR FF+ QQ Q+ + +Q
Sbjct: 66 SDTNENMFAYQPGGVQGMMGGGNFASSPGSMQMPQQSRNFFESPQQQQQQQQQGSSTQEG 125
Query: 121 EHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPAS-GKDQDMRMGNLKMQELI 179
+ Q NP+ QAY+Q+A+QAQ + A QQA++GM+G +S GKDQD RMG L MQ+L
Sbjct: 126 Q-QNFNPMQQAYIQFAMQAQHQKAQ-----QQARMGMVGSSSVGKDQDARMGMLNMQDL- 178
Query: 180 SMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAANIIR 239
++Q QASSSK S +QF RGE+Q E QQ ++ K P+ QQ GQ M N+IR
Sbjct: 179 --NPSSQPQASSSKPSGDQFARGERQTESSSQQRNETKSHPQ---QQVGTGQLMPGNMIR 233
Query: 240 PMQAAQHQQSIQNAAGNQLAMAAQ---LQAWALERNIDLSQPANASLIAQLIPIMQSRIV 296
PMQA Q QQ + N NQLA A Q +QAWA ERNIDLS PANAS Q+ I+Q+R+
Sbjct: 234 PMQAPQAQQLVNNMGNNQLAFAQQWQAMQAWARERNIDLSHPANAS---QMAHILQARMA 290
Query: 297 ANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAKARPTVSPSP 356
A KA E N+ + S +P+S Q +S + GENSPHANS+SD+SGQSGSAKAR +S
Sbjct: 291 AQQKAGEGNVASQSPSIPISSQPASSSVVPGENSPHANSASDISGQSGSAKARHALSTGS 350
Query: 357 LGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQ 416
ST+S +VN N FS GR+N + R V NG+P +P QTS N TP +DQ
Sbjct: 351 FASTSSPRMVNPAMN----PFSGQGRENPMYPRHLVQPTNGMPSGNPLQTSANETPVLDQ 406
Query: 417 PLPVKNSSGP-ENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQMPQQRLGFT 475
K S GP E+ QMQ RQLN +P PS G +N+ S Q G TQ QQR GFT
Sbjct: 407 NASTKKSLGPAEHLQMQQPRQLNTPTPNLVAPSDTGPLSNS-SLQSGQGTQQAQQRSGFT 465
Query: 476 KHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNNQDRVS 535
K QLHVLKAQILAFRRLKKGEG+LP ELL+AI PP LELQ Q+Q PA QDR S
Sbjct: 466 KQQLHVLKAQILAFRRLKKGEGSLPPELLQAISPPPLELQ---TQRQISPAIGKVQDRSS 522
Query: 536 GKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPV-GQGMSAVTKEPAP 594
K EDQ R LE GK++QA +SSN KEE GD + A++ Q + KE
Sbjct: 523 DKTGEDQARSLEC-GKESQAAASSNGPIFSKEEDNVGDTEVALTTGHSQLFQNLGKEATS 581
Query: 595 VVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVKKPAQ 654
V KEEQQ V VKSDQ + + +SD AD+GK+V A D Q K P Q
Sbjct: 582 TDVATKEEQQTDVFPVKSDQGADSSTQKN-PRSDSTADKGKAV-----ASDGSQSKVPPQ 635
Query: 655 ATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGL 714
A + PKD +ARKY+GPLFDFPFFTRK DS GS A N++NNLTLAYD+KDL+ EEG
Sbjct: 636 ANSPQPPKDTASARKYYGPLFDFPFFTRKLDSYGS-ATANANNNLTLAYDIKDLICEEGA 694
Query: 715 EVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQ 774
E L KKR+++LKKI+G+LA NLERKRIRPDLVLRLQIE+KKLRL DLQSR+R+EVD+QQQ
Sbjct: 695 EFLSKKRTDSLKKINGLLAKNLERKRIRPDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQ 754
Query: 775 EIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDA 834
EIM+MPDR YRKFVRLCERQR+E+ RQV +QKA+REKQLK+I QWRKKLLEAHWAIRDA
Sbjct: 755 EIMSMPDRPYRKFVRLCERQRLEMNRQVLANQKAVREKQLKTIFQWRKKLLEAHWAIRDA 814
Query: 835 RTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAER 894
RTARNRGVAKYHE++LREFSKRKDD RNKRMEALKNNDVERYREMLLEQQT++PGDAAER
Sbjct: 815 RTARNRGVAKYHEKMLREFSKRKDDGRNKRMEALKNNDVERYREMLLEQQTNMPGDAAER 874
Query: 895 YAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEEVRSAAACAG 954
YAVLSSFLTQTE+YL+KLG KITA KNQQEVEEAANAAA AARLQGLSEEEVR+AA CA
Sbjct: 875 YAVLSSFLTQTEDYLHKLGGKITATKNQQEVEEAANAAAVAARLQGLSEEEVRAAATCAR 934
Query: 955 EEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLS 1014
EEV+IRNRF EMNAP++ SSVNKYY+LAHAVNE V+RQPSML+AGTLRDYQ+VGLQWMLS
Sbjct: 935 EEVVIRNRFTEMNAPKENSSVNKYYTLAHAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLS 994
Query: 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLP 1074
LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH WLP
Sbjct: 995 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLP 1054
Query: 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1134
SVSCIYYVG KDQRS+LFSQEV A+KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM
Sbjct: 1055 SVSCIYYVGTKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1114
Query: 1135 KDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPF 1194
KDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP+VFDNRKAFHDWF+QPF
Sbjct: 1115 KDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPDVFDNRKAFHDWFAQPF 1174
Query: 1195 QKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSA 1254
QKEGP HN +DDWLETEKKVI+IHRLHQILEPFMLRRRVEDVEGSLP KVS+VLRCRMSA
Sbjct: 1175 QKEGPAHNIEDDWLETEKKVIVIHRLHQILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSA 1234
Query: 1255 IQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY 1314
IQSA+YDWIKATGTLRVDP+DEK R QKNPIYQAK+Y+TLNNRCMELRK CNHPLLNYPY
Sbjct: 1235 IQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTLNNRCMELRKACNHPLLNYPY 1294
Query: 1315 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 1374
F+D SKDFLV+SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR+LVYRRI
Sbjct: 1295 FNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRI 1354
Query: 1375 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1434
DGTTSLEDRESAIVDFN D+DCFIFLLSIRAAGRGLNLQ+ADTV+IYDPDPNPKNEEQA
Sbjct: 1355 DGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQA 1414
Query: 1435 VARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLI 1494
VARAHRIGQ REVKVIYMEAVV+K+SSHQKEDELRSGG+VDLEDD+AGKDRYIGSIEGLI
Sbjct: 1415 VARAHRIGQTREVKVIYMEAVVEKLSSHQKEDELRSGGSVDLEDDMAGKDRYIGSIEGLI 1474
Query: 1495 RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRM 1554
RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSL EVNRM
Sbjct: 1475 RNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLHEVNRM 1534
Query: 1555 IARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGS 1614
IARSE+EVELFDQMDEEF W EEMT ++QVPKWLRAST+EVNAT+A+LSKKPSKN+L S
Sbjct: 1535 IARSEEEVELFDQMDEEFDWTEEMTNHEQVPKWLRASTREVNATVADLSKKPSKNMLSSS 1594
Query: 1615 NIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQEEEGEIGEFE 1673
N+ V G ERKRG PK KK NYKE++D+I YSE SS+ERN EEEG+I +F+
Sbjct: 1595 NLIVQPGGPGGERKRGRPKSKKI-NYKEIEDDIAGYSEESSEERNIDSGNEEEGDIRQFD 1653
Query: 1674 DDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSSGSSSNSRRLT 1733
DDE +GA+G +NK + + + PVC GYDY S + + N ++AGSSGSS S R
Sbjct: 1654 DDELTGALGDHQTNKGEFDGENPVC--GYDYPPGSGSYKKNPPRDDAGSSGSSPESHRSK 1711
Query: 1734 QIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEG 1793
++ SPVS QKFGSLSAL+ RPGS+SKR+ D+LEEGEIA SGDSH+D Q+SGSW HDRDEG
Sbjct: 1712 EMASPVSSQKFGSLSALDTRPGSVSKRLLDDLEEGEIAASGDSHIDLQRSGSWAHDRDEG 1771
Query: 1794 EDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTD 1853
++EQVLQP IKRKRSIR+RPR T ER + ++ P + P Q+D Y ++LRT
Sbjct: 1772 DEEQVLQPTIKRKRSIRLRPRQTAERVD---GSEMPAAQ------PLQVDRSYRSKLRTV 1822
Query: 1854 TEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSR-ASLKTGRLNCMPGHTEDAAD 1912
+ +H SS R++P++K+A+ K +S K+GRLN ED A+
Sbjct: 1823 VD--SHSSRQD-----QSDSSSRLRSVPAKKVASTSKLHVSSPKSGRLNATQLTVEDNAE 1875
Query: 1913 HFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI 1972
+E+WDG + SSN A+MS +IQ+RCK VISKLQRRI+KEG QIVP+LT+LWKRI
Sbjct: 1876 ASRETWDG--TSPISSSNAGARMSHIIQKRCKIVISKLQRRIDKEGQQIVPMLTNLWKRI 1933
Query: 1973 ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEAR 2032
+ +GY +G NN+L+LR+ID RV+RLEY GVMEL SDVQ ML+GAMQFYGFSHEVRSEA+
Sbjct: 1934 Q-NGYAAGGVNNLLELREIDHRVERLEYAGVMELASDVQLMLRGAMQFYGFSHEVRSEAK 1992
Query: 2033 KVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRHKIINEMEP 2092
KVH+LFFDLLK++FPDTDFREAR+ALSF+G T VSTP+PR + Q KR K++NE E
Sbjct: 1993 KVHNLFFDLLKMSFPDTDFREARNALSFSGSAPTLVSTPTPRGAGISQGKRQKLVNEPET 2052
Query: 2093 GPSPPQKPPQRGSVPVSEDSRIRVQIPQKESRLGSGSGSSREQSQPDDSP---HPGELVI 2149
PS PQ+ QR E+SRIRVQIPQKE++LG + S D+SP HPGELVI
Sbjct: 2053 EPSSPQRSQQR------ENSRIRVQIPQKETKLGGTT------SHTDESPILAHPGELVI 2100
Query: 2150 CKKKRKDREKSVVKPRS----VSGPVSPPSLGRNIKSPGLGLVPKDMRHTQQTTHQHGWA 2205
CKKKRKDREKS K R+ P +GR ++SP G VP++ R Q Q W
Sbjct: 2101 CKKKRKDREKSGPKTRTGGSSSPVSPPPAMIGRGLRSPVSGGVPRETRLAQ----QQRWP 2156
Query: 2206 NQPAQPANGGSG--AVGWANPVKRLRTDAGKRRPSQL 2240
NQP P N G+ +VGWANPVKRLRTD+GKRRPS L
Sbjct: 2157 NQPTHPNNSGAAGDSVGWANPVKRLRTDSGKRRPSHL 2193
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ATPase subunit of a multiprotein complex equivalent of the SWI/SNF complex that acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. Represses embryonic genes in leaves and controls shoot development and flowering. Activates flower homeotic genes. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2 |
| >sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf22 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 516 bits (1330), Expect = e-145, Method: Compositional matrix adjust.
Identities = 308/843 (36%), Positives = 459/843 (54%), Gaps = 112/843 (13%)
Query: 751 IEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVE------LMRQVQT 804
IE + LRLL+ Q LR+ ++ ++ R R +RQ ++ + + Q
Sbjct: 646 IELRCLRLLEKQRSLRETINSVIPHSDSLAAGNLRLMFRNVKRQTMQEANLVLALAEKQK 705
Query: 805 SQKAMREKQ-----LKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDD 859
++ AMR+K+ L+SI RK ++ A+T R + + +H + +E KR +
Sbjct: 706 TEHAMRQKEKLLTHLRSIMLHRKSIVTKVDKQNKAKTQRCKDIINFHAHLEKEEKKRIER 765
Query: 860 DRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAA 919
+R++AL+ +D Y ++L D A+ + + L QT++YL L +
Sbjct: 766 SARQRLQALRADDEAAYLQLL---------DKAKDTRI-THLLKQTDQYLENLTRAVRIQ 815
Query: 920 KNQQEVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYY 979
++ + + +A L+ EE ++ Y+
Sbjct: 816 QSNIHSGNTSGKGSNSAELEAPISEEDKNL---------------------------DYF 848
Query: 980 SLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMAL 1039
+AH ++E V QP + GTL+DYQ+ GL+WMLSLYNN LNGILADEMGLGKT+Q +A
Sbjct: 849 KVAHRIHEEV-EQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAF 907
Query: 1040 IAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099
I YL+E K GP LIIVP + L NW E KW PSV I Y G R L SQ + +
Sbjct: 908 ITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKGPPQLRKTLQSQ-IRSS 966
Query: 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTG 1158
FNVL+TT+E+I+ DR LS++ W ++IIDE R+K+ +S L L Y Q RL+LTG
Sbjct: 967 NFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTG 1026
Query: 1159 TPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218
TPLQN+L ELW+LLN +LP++F++ K+F +WF+ PF G D L E+ ++II
Sbjct: 1027 TPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTG---GQDKIGLNEEEALLIIK 1083
Query: 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKR 1278
RLH++L PF+ RR +DVE LP KV V++C +S +Q +Y +K G L VD E K
Sbjct: 1084 RLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGKT 1143
Query: 1279 RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK---------DFLVKSCGK 1329
+ K L N M+L+K CNHP + F D+ + D L ++ GK
Sbjct: 1144 GI-----------KGLQNTVMQLKKICNHPFI----FEDVERAIDPSGTNVDLLWRAAGK 1188
Query: 1330 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389
+LDRIL KL TGH+ L+F MT+++ I+E+YL+ + Y R+DG+T +DR S +
Sbjct: 1189 FELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQ 1248
Query: 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449
FN SD +IF+LS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQ +EV++
Sbjct: 1249 FNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRI 1308
Query: 1450 IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV 1509
+ + I+ E+ + S QYK+D+ +V
Sbjct: 1309 LRL------ITEKSIEENILSRA---------------------------QYKLDLDGKV 1335
Query: 1510 INAGRFDQRTTHEERRMTLETLL-HDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQM 1568
I AG+FD ++T EER L +LL HD + + + E+N +I+R+++E+ LF ++
Sbjct: 1336 IQAGKFDNKSTPEEREAFLRSLLEHDGDDDHDLTYGELQDDELNELISRTDEELVLFKKL 1395
Query: 1569 DEE 1571
D+E
Sbjct: 1396 DKE 1398
|
Helicase. Component of the SWI/SNF complex, an ATP-dependent chromatin remodeling complex, required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1 SV=2 | Back alignment and function description |
|---|
Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust.
Identities = 272/641 (42%), Positives = 382/641 (59%), Gaps = 73/641 (11%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YYS+AH ++E+V+ Q S++ GTL++YQI GL+W++SLYNN LNGILADEMGLGKT+Q +
Sbjct: 750 YYSIAHTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTI 809
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097
+L+ YLM+ K GP+LIIVP + L NW E KW P+V + Y G+ R RL ++
Sbjct: 810 SLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYKGSPQGR-RLLQNQMR 868
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLL 1156
A KFNVL+TTYE+++ D++ L+K+ WKY+IIDE RMK+ L + L+ Y RLLL
Sbjct: 869 ATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHHCKLTQVLNTHYIAPYRLLL 928
Query: 1157 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+ ++I
Sbjct: 929 TGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTG-----EKVELNEEETILI 983
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L PF+LRR ++VE LP KV +++C MSA+Q +Y +++ G L D ++
Sbjct: 984 IRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEK 1043
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF-------------- 1322
+ K L N ++LRK CNHP + F + + +
Sbjct: 1044 GKH-------GKGGAKALMNTIVQLRKLCNHPFM----FQHIEEKYCDHTGGHGVVSGPD 1092
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L + GK +LDRIL KL+ T HRVLLF MT+ + I+E+YL WRQ Y R+DGTT ED
Sbjct: 1093 LYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAED 1152
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN+ SD F+FLLS RA G GLNLQ+ADTV+I+D D NP + QA RAHRIG
Sbjct: 1153 RGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIG 1212
Query: 1443 QKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYK 1502
Q+ EV+V+ + V S+E I +YK
Sbjct: 1213 QRNEVRVLRLMTV--------------------------------NSVEERIL-AAARYK 1239
Query: 1503 IDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEV 1562
++M ++VI AG FDQ++T ER+ L+T+LH ++ +E ++VP + +N MIARSE+E+
Sbjct: 1240 LNMDEKVIQAGMFDQKSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEI 1299
Query: 1563 ELFDQMDEE--------FGWIEEMTRYDQVPKWLRASTKEV 1595
E+F +MD E E + ++P WL EV
Sbjct: 1300 EIFKRMDAERKKEDEEIHPGRERLIDESELPDWLTKDDDEV 1340
|
Transcriptional regulator. Act as coactivator, assisting one or more dedicated transcriptional activators of ANTC and BXC homeotic gene clusters. Can counteract the repressive effect of Polycomb protein. ATPase subunit of the Brahma complex, a multiprotein complex which is the equivalent of the yeast SWI/SNF complex and acts by remodeling the chromatin by catalyzing an ATP-dependent alteration in the structure of nucleosomal DNA. This complex can both serve as a transcriptional coactivator or corepressor, depending on the context. Drosophila melanogaster (taxid: 7227) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=snf21 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust.
Identities = 328/850 (38%), Positives = 466/850 (54%), Gaps = 128/850 (15%)
Query: 751 IEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCER-----QRVELMRQVQTS 805
+E KKLRL+ Q LR +V Q + + + R C R Q L ++
Sbjct: 199 VELKKLRLIKQQESLRHQVMHCQPHLRTIVNAVERMS---CRRPKLVPQATRLTEVLERQ 255
Query: 806 QKAMREKQLKSISQWRKKLLEAHWAIRDART----AR----NRGVAKYHERILREFSKRK 857
Q++ RE++LK + + AH + RT AR NR V YH I +E +R
Sbjct: 256 QRSDRERRLKQKQCDYLQTVCAHGREINVRTKNAQARAQKANRAVLAYHSHIEKEEQRRA 315
Query: 858 DDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKIT 917
+ + +R++ALK ND E Y +++ D A+ + + L QT+ YL
Sbjct: 316 ERNAKQRLQALKENDEEAYLKLI---------DQAKDTRI-THLLRQTDHYL-------- 357
Query: 918 AAKNQQEVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNK 977
++ AAA ++Q A +E M R MN P D ++
Sbjct: 358 ------------DSLAAAVKVQQ------SQFGESAYDEDMDRR----MN-PEDDRKID- 393
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY++AH + E V QPS+L G L++YQ+ GLQWM+SLYNN LNGILADEMGLGKT+Q +
Sbjct: 394 YYNVAHNIREVVTEQPSILVGGKLKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTI 453
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097
+LI +L+E K GP L+IVP + L NW E +W PS+ I Y G R L Q V
Sbjct: 454 SLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSIVKIVYKGPPQVRKALHPQ-VR 512
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR-RLLL 1156
F VL+TTYE+I+ DR LS++ W Y+IIDE RMK+ +S L L Y R RL+L
Sbjct: 513 HSNFQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRYRLIL 572
Query: 1157 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN+L ELW+LLN +LP +F++ K+F +WF+ PF G D L E+ +++
Sbjct: 573 TGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTG---GQDKMELTEEESLLV 629
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L PF+LRR +DVE LP KV V+RC+MS +Q +Y +K G L V ED
Sbjct: 630 IRRLHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYV--EDA 687
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK---------DFLVKSC 1327
KR K I K L N M+L+K CNHP + F D+ + D L +
Sbjct: 688 KR--GKTGI------KGLQNTVMQLKKICNHPFV----FEDVERSIDPTGFNYDMLWRVS 735
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GK +LDRIL KL R+GHR+L+F MT++++I+E+YL +RQ Y R+DG+T +DR +
Sbjct: 736 GKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLL 795
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
FN ++ +FLLS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQ +EV
Sbjct: 796 GVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEV 855
Query: 1448 KVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMAD 1507
++ + + +K +E+++ + QYK+D+
Sbjct: 856 RIYRL--ITEK----------------SVEENILAR---------------AQYKLDIDG 882
Query: 1508 EVINAGRFDQRTTHEERRMTLETLLHDEERYQET-----VHDVPSLQEVNRMIARSEDEV 1562
+VI AG+FD ++T EER L +LL +E +E + D E+N ++AR +DE+
Sbjct: 883 KVIQAGKFDNKSTPEEREAFLRSLLENENGEEENDEKGELDD----DELNEILARGDDEL 938
Query: 1563 ELFDQMDEEF 1572
LF QM E+
Sbjct: 939 RLFKQMTEDL 948
|
Helicase. Component of the chromatin structure remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. Controls particularly membrane and organelle development genes. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus GN=Smarca2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust.
Identities = 267/608 (43%), Positives = 365/608 (60%), Gaps = 67/608 (11%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY++AHA++ERV +Q ++L GTL+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +
Sbjct: 706 YYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 765
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097
ALI YLME K GP+LIIVP + L NW E KW PSV I Y G R L Q +
Sbjct: 766 ALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LR 824
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLL 1156
+ KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR+LL
Sbjct: 825 SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILL 884
Query: 1157 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+ ++I
Sbjct: 885 TGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVD-----LNEEETILI 939
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D ++
Sbjct: 940 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 999
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF-------------- 1322
++ KTL N M+LRK CNHP + F + + F
Sbjct: 1000 DKK-------GKGGAKTLMNTIMQLRKICNHPYM----FQHIEESFAEHLGYSNGVINGA 1048
Query: 1323 -LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
L ++ GK +LDRIL KL+ T HRVLLF MT L+ I+E+Y +R +Y R+DGTT E
Sbjct: 1049 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1108
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
DR + + FN S FIFLLS RA G GLNLQ+ADTV+I+D D NP + QA RAHRI
Sbjct: 1109 DRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRI 1168
Query: 1442 GQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQY 1501
GQ+ EV+V+ + V + E+++ + +Y
Sbjct: 1169 GQQNEVRVLRLCTV------NSVEEKILAAA---------------------------KY 1195
Query: 1502 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDE 1561
K+++ +VI AG FDQ+++ ERR L+ +L EE +E + +N+MIAR E+E
Sbjct: 1196 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLNQMIARREEE 1254
Query: 1562 VELFDQMD 1569
+LF +MD
Sbjct: 1255 FDLFMRMD 1262
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust.
Identities = 279/678 (41%), Positives = 379/678 (55%), Gaps = 108/678 (15%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD-----LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ KTL N M+LRK CNHP + F + + F
Sbjct: 1022 SEKDKK-------GKGGTKTLMNTIMQLRKICNHPYM----FQHIEESFSEHLGFTGGIV 1070
Query: 1323 ----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT
Sbjct: 1071 QGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTT 1130
Query: 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438
EDR + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RA
Sbjct: 1131 KAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRA 1190
Query: 1439 HRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNI 1498
HRIGQ+ EV+V+ + V+ + E LA
Sbjct: 1191 HRIGQQNEVRVLRL-CTVNSVE----------------EKILAAA--------------- 1218
Query: 1499 QQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH--------------- 1543
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ E+ H
Sbjct: 1219 -KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQ-DESRHCSTGSGSASFAHTAP 1276
Query: 1544 ------------------DVPSLQEVNRMIARSEDEVELFDQMDEEFGWIE--------E 1577
+VP + VN+MIAR E+E +LF +MD + E
Sbjct: 1277 PPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPR 1336
Query: 1578 MTRYDQVPKWLRASTKEV 1595
+ D++P W+ EV
Sbjct: 1337 LMEEDELPSWIIKDDAEV 1354
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues (By similarity). Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens GN=SMARCA2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust.
Identities = 267/608 (43%), Positives = 365/608 (60%), Gaps = 67/608 (11%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY++AHA++ERV +Q ++L GTL+ YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +
Sbjct: 701 YYTVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTI 760
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097
ALI YLME K GP+LIIVP + L NW E KW PSV I Y G R L Q +
Sbjct: 761 ALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQ-LR 819
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLL 1156
+ KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR+LL
Sbjct: 820 SGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILL 879
Query: 1157 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+ ++I
Sbjct: 880 TGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVD-----LNEEETILI 934
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D ++
Sbjct: 935 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEK 994
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF-------------- 1322
++ KTL N M+LRK CNHP + F + + F
Sbjct: 995 DKK-------GKGGAKTLMNTIMQLRKICNHPYM----FQHIEESFAEHLGYSNGVINGA 1043
Query: 1323 -LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
L ++ GK +LDRIL KL+ T HRVLLF MT L+ I+E+Y +R +Y R+DGTT E
Sbjct: 1044 ELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSE 1103
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
DR + + FN S FIFLLS RA G GLNLQ+ADTV+I+D D NP + QA RAHRI
Sbjct: 1104 DRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRI 1163
Query: 1442 GQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQY 1501
GQ+ EV+V+ + V + E+++ + +Y
Sbjct: 1164 GQQNEVRVLRLCTV------NSVEEKILAAA---------------------------KY 1190
Query: 1502 KIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDE 1561
K+++ +VI AG FDQ+++ ERR L+ +L EE +E + +N+MIAR E+E
Sbjct: 1191 KLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVP-DDETLNQMIARREEE 1249
Query: 1562 VELFDQMD 1569
+LF +MD
Sbjct: 1250 FDLFMRMD 1257
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust.
Identities = 274/645 (42%), Positives = 376/645 (58%), Gaps = 75/645 (11%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 720 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 779
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 780 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 838
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 839 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 898
Query: 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+
Sbjct: 899 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD-----LNEEET 953
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 954 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1013
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ KTL N M+LRK CNHP + F + + F
Sbjct: 1014 SEKDKK-------GKGGTKTLMNTIMQLRKICNHPYM----FQHIEESFSEHLGFTGGIV 1062
Query: 1323 ----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT
Sbjct: 1063 QGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTT 1122
Query: 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438
EDR + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RA
Sbjct: 1123 KAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRA 1182
Query: 1439 HRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNI 1498
HRIGQ+ EV+V+ + V + E+++ +
Sbjct: 1183 HRIGQQNEVRVLRLCTV------NSVEEKILAAA-------------------------- 1210
Query: 1499 QQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARS 1558
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ +E + VN+MIAR
Sbjct: 1211 -KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVP-DDETVNQMIARH 1268
Query: 1559 EDEVELFDQMDEEFGWIE--------EMTRYDQVPKWLRASTKEV 1595
E+E +LF +MD + E + D++P W+ EV
Sbjct: 1269 EEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEV 1313
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-fOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/645 (42%), Positives = 375/645 (58%), Gaps = 75/645 (11%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD-----LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ KTL N M+LRK CNHP + F + + F
Sbjct: 1022 SEKDKK-------GKGGTKTLMNTIMQLRKICNHPYM----FQHIEESFSEHLGFTGGIV 1070
Query: 1323 ----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT
Sbjct: 1071 QGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTT 1130
Query: 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438
EDR + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RA
Sbjct: 1131 KAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRA 1190
Query: 1439 HRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNI 1498
HRIGQ+ EV+V+ + V+ + E LA
Sbjct: 1191 HRIGQQNEVRVLRL-CTVNSVE----------------EKILAAA--------------- 1218
Query: 1499 QQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARS 1558
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ +E + VN+MIAR
Sbjct: 1219 -KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVP-DDETVNQMIARH 1276
Query: 1559 EDEVELFDQMDEEFGWIE--------EMTRYDQVPKWLRASTKEV 1595
E+E +LF +MD + E + D++P W+ EV
Sbjct: 1277 EEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEV 1321
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 483 bits (1243), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/645 (42%), Positives = 375/645 (58%), Gaps = 75/645 (11%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN L ELW+LLN LLP +F + F WF+ PF G + L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD-----LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ KTL N M+LRK CNHP + F + + F
Sbjct: 1022 SEKDKK-------GKGGTKTLMNTIMQLRKICNHPYM----FQHIEESFSEHLGFTGGIV 1070
Query: 1323 ----LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT
Sbjct: 1071 QGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTT 1130
Query: 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438
EDR + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RA
Sbjct: 1131 KAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRA 1190
Query: 1439 HRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNI 1498
HRIGQ+ EV+V+ + V+ + E LA
Sbjct: 1191 HRIGQQNEVRVLRL-CTVNSVE----------------EKILAAA--------------- 1218
Query: 1499 QQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARS 1558
+YK+++ +VI AG FDQ+++ ERR L+ +L EE+ +E + VN+MIAR
Sbjct: 1219 -KYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEEEDEVP-DDETVNQMIARH 1276
Query: 1559 EDEVELFDQMDEEFGWIE--------EMTRYDQVPKWLRASTKEV 1595
E+E +LF +MD + E + D++P W+ EV
Sbjct: 1277 EEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWIIKDDAEV 1321
|
Transcriptional coactivator cooperating with nuclear hormone receptors to potentiate transcriptional activation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Component of the CREST-BRG1 complex, a multiprotein complex that regulates promoter activation by orchestrating a calcium-dependent release of a repressor complex and a recruitment of an activator complex. In resting neurons, transcription of the c-FOS promoter is inhibited by BRG1-dependent recruitment of a phospho-RB1-HDAC repressor complex. Upon calcium influx, RB1 is dephosphorylated by calcineurin, which leads to release of the repressor complex. At the same time, there is increased recruitment of CREBBP to the promoter by a CREST-dependent mechanism, which leads to transcriptional activation. The CREST-BRG1 complex also binds to the NR2B promoter, and activity-dependent induction of NR2B expression involves a release of HDAC1 and recruitment of CREBBP (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. SMARCA4/BAF190A may promote neural stem cell self-renewal/proliferation by enhancing Notch-dependent proliferative signals, while concurrently making the neural stem cell insensitive to SHH-dependent differentiating cues. Acts as a corepressor of ZEB1 to regulate E-cadherin transcription and is required for induction of epithelial-mesenchymal transition (EMT) by ZEB1. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2240 | ||||||
| 255541636 | 2248 | Chromo domain protein, putative [Ricinus | 0.995 | 0.992 | 0.779 | 0.0 | |
| 359489634 | 2263 | PREDICTED: ATP-dependent helicase BRM-li | 0.994 | 0.984 | 0.781 | 0.0 | |
| 224064045 | 2222 | chromatin remodeling complex subunit [Po | 0.968 | 0.976 | 0.775 | 0.0 | |
| 147789690 | 2238 | hypothetical protein VITISV_024679 [Viti | 0.982 | 0.983 | 0.770 | 0.0 | |
| 356560792 | 2229 | PREDICTED: ATP-dependent helicase BRM-li | 0.970 | 0.975 | 0.730 | 0.0 | |
| 449432144 | 2247 | PREDICTED: ATP-dependent helicase BRM-li | 0.989 | 0.986 | 0.732 | 0.0 | |
| 356520394 | 2226 | PREDICTED: ATP-dependent helicase BRM-li | 0.970 | 0.976 | 0.729 | 0.0 | |
| 449480215 | 2251 | PREDICTED: LOW QUALITY PROTEIN: ATP-depe | 0.991 | 0.986 | 0.730 | 0.0 | |
| 356568407 | 2222 | PREDICTED: ATP-dependent helicase BRM-li | 0.958 | 0.966 | 0.716 | 0.0 | |
| 356531981 | 2222 | PREDICTED: ATP-dependent helicase BRM-li | 0.957 | 0.965 | 0.710 | 0.0 |
| >gi|255541636|ref|XP_002511882.1| Chromo domain protein, putative [Ricinus communis] gi|223549062|gb|EEF50551.1| Chromo domain protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3404 bits (8826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1760/2257 (77%), Positives = 1951/2257 (86%), Gaps = 26/2257 (1%)
Query: 1 MQSGGG-PSRNRAAS---TSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQ 56
MQSGGG PSR A ++S+A+ SSSS+ ++P LGFDS+QQ QHQQ RQ Q Q
Sbjct: 1 MQSGGGGPSRVGPAGRAASTSSAASPSSSSSAASPQLGFDSVQQHHQHQQLGSRQALQHQ 60
Query: 57 ILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAISQESQNR 116
+LRKP+GNEA+LAYQ G+ G++GG NFA PGSMQ PQQSRKFFD AQQ SQ+ QNR
Sbjct: 61 LLRKPEGNEALLAYQAGAFQGVIGGSNFAPSPGSMQMPQQSRKFFDLAQQQNSSQDGQNR 120
Query: 117 SQGVEHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRMGNLKMQ 176
+Q VE Q+LNPVHQAY+Q+A Q QQKSA V+QSQQQAK+GMLGPA+GKDQ+MRMGN KMQ
Sbjct: 121 NQAVEQQVLNPVHQAYLQFAFQ-QQKSALVMQSQQQAKMGMLGPATGKDQEMRMGNSKMQ 179
Query: 177 ELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMAAN 236
EL S+Q+A+QAQASSSKNSSE F RGEKQ+EQ QQ +Q+ E KPP+Q GQ M AN
Sbjct: 180 ELTSIQAASQAQASSSKNSSENFTRGEKQVEQGQQLAPEQRNEQKPPTQPPGVGQAMPAN 239
Query: 237 IIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---WALERNIDLSQPANASLIAQLIPIMQS 293
++RPMQA Q QQSIQN NQLAMAAQLQA WALERNIDLS PANA+L+AQLIP+MQS
Sbjct: 240 VVRPMQAPQAQQSIQNMVNNQLAMAAQLQAMQAWALERNIDLSLPANANLMAQLIPLMQS 299
Query: 294 RIVANHKANESNMGAPSSPVPVS--KQQVTSPTIAGENSPHANSSSDVSGQSGSAKARPT 351
R+ A KANESN GA +SPVPVS K QV SP +A E+SPHANSSSDVSGQSG KAR T
Sbjct: 300 RMAAQQKANESNAGAQASPVPVSVSKHQVASPPVASESSPHANSSSDVSGQSGPPKARQT 359
Query: 352 VSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTSLNMT 411
V P GS++++ +VN+ N++++QQ + R+NQ P R V +GNG+P +HP Q S NM+
Sbjct: 360 VPSGPFGSSSNSGIVNSANSLAMQQLAFQNRENQAPPRTGVILGNGMPSMHPSQLSANMS 419
Query: 412 PGVDQPLPVKNS-SGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQMPQQ 470
G DQ +P KN+ + PE QMQ+L+Q+NRSSPQSA S+DG S+N+ SSQG + QM Q
Sbjct: 420 QGGDQNMPAKNAINSPETLQMQHLKQMNRSSPQSAGLSNDGGSSNHNSSQGTPSVQMAQN 479
Query: 471 RLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNN 530
R+GFTK QLHVLKAQILAFRRLKKGEGTLPQELLRAI + + QQQFLPA +N
Sbjct: 480 RVGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAI---APPPLELQLQQQFLPAGGSN 536
Query: 531 QDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQGMSAVTK 590
QDR GKI EDQ +HLESN K++QA+ S N Q+ KEEA AG +K VS K
Sbjct: 537 QDRSGGKILEDQAKHLESNEKNSQAMPSMNGQNAAKEEAVAGVEKPTVSASNIEGPTAAK 596
Query: 591 EPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACDAVQVK 650
+P V KEEQQ VKSDQEVE L +T +SD AD+GK+VAPQV DAVQ K
Sbjct: 597 DPTTSVAVRKEEQQTATFPVKSDQEVERSLQKTPVRSDVTADKGKAVAPQVPVSDAVQAK 656
Query: 651 KPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDVKDLLS 710
KPAQ + A QPKDVG+ARKYHGPLFDFPFFTRKHDS+GS+ M+N++NNL LAYDVKDLL
Sbjct: 657 KPAQTSVAPQPKDVGSARKYHGPLFDFPFFTRKHDSIGSSGMINTNNNLILAYDVKDLLF 716
Query: 711 EEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVD 770
EEGLEVL KKRSENLKKI+G+LAVNLERKRIRPDLVLRLQIE+KKL+LLDLQ+RLRDEVD
Sbjct: 717 EEGLEVLNKKRSENLKKINGLLAVNLERKRIRPDLVLRLQIEEKKLKLLDLQARLRDEVD 776
Query: 771 QQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWA 830
QQQQEIMAMPDR YRKFVRLCERQR+E RQVQ SQKAMR+KQLKSI QWRKKLLEAHW
Sbjct: 777 QQQQEIMAMPDRPYRKFVRLCERQRMEQARQVQASQKAMRDKQLKSIFQWRKKLLEAHWG 836
Query: 831 IRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGD 890
IRDARTARNRGVAKYHER+LREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT+I GD
Sbjct: 837 IRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTNIEGD 896
Query: 891 AAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEEVRSAA 950
AAERYAVLSSFLTQTEEYL+KLGSKITAAKNQQEVEEAANAAA AARLQGLSEEEVR AA
Sbjct: 897 AAERYAVLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAANAAATAARLQGLSEEEVRVAA 956
Query: 951 ACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQ 1010
ACAGEEVMIRNRF+EMNAP+D SSV+KYYSLAHAVNERV+RQPSMLRAGTLRDYQ+VGLQ
Sbjct: 957 ACAGEEVMIRNRFMEMNAPKDSSSVSKYYSLAHAVNERVIRQPSMLRAGTLRDYQLVGLQ 1016
Query: 1011 WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070
WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH
Sbjct: 1017 WMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1076
Query: 1071 KWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDE 1130
WLPSVSCIYYVG+KDQRS+LFSQEV+A+KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDE
Sbjct: 1077 NWLPSVSCIYYVGSKDQRSKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDE 1136
Query: 1131 AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF 1190
AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF
Sbjct: 1137 AQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWF 1196
Query: 1191 SQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRC 1250
S+PFQKEGP H+A+DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRC
Sbjct: 1197 SKPFQKEGPAHDAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRC 1256
Query: 1251 RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310
RMSAIQSA+YDWIK+TGTLRVDPEDEKRR QKNPIYQ KVYKTLNNRCMELRK CNHPLL
Sbjct: 1257 RMSAIQSAVYDWIKSTGTLRVDPEDEKRRAQKNPIYQPKVYKTLNNRCMELRKACNHPLL 1316
Query: 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370
NYPYF+D SKDFLV+SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR+LV
Sbjct: 1317 NYPYFNDFSKDFLVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLV 1376
Query: 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430
YRRIDGTTSLEDRESAIVDFNS DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN
Sbjct: 1377 YRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1436
Query: 1431 EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSI 1490
EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGT+DLEDDLAGKDRY+GSI
Sbjct: 1437 EEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTIDLEDDLAGKDRYMGSI 1496
Query: 1491 EGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQE 1550
E LIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVH+VPSLQE
Sbjct: 1497 ESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHNVPSLQE 1556
Query: 1551 VNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKPSKNI 1610
VNRMIARSEDEVELFDQMDE+ W EEMT YDQVPKWLRAST++VNA IANLSKKPSKNI
Sbjct: 1557 VNRMIARSEDEVELFDQMDEDLDWTEEMTSYDQVPKWLRASTRDVNAAIANLSKKPSKNI 1616
Query: 1611 LFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQEEEGEI 1669
L+ S++G++S E+ETERKRG PKGKK PNYKEVDD+ GEYSEASSDERNGY EEEGEI
Sbjct: 1617 LYASSVGMESSEVETERKRGRPKGKKSPNYKEVDDDNGEYSEASSDERNGYCAHEEEGEI 1676
Query: 1670 GEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAGSSGSSSNS 1729
EFEDDE SGAVGAP NKDQSE+DGP C+GGY+Y R S + R+NH++EEAGSSGSSS++
Sbjct: 1677 REFEDDESSGAVGAPPINKDQSEDDGPTCDGGYEYPRASTSARDNHILEEAGSSGSSSDN 1736
Query: 1730 RRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHD 1789
RR+T+IVSPVS QKFGSLSAL+ARPGS+SK++PDELEEGEIAVSGDSH+DHQQSGSW HD
Sbjct: 1737 RRITRIVSPVSSQKFGSLSALDARPGSISKKLPDELEEGEIAVSGDSHLDHQQSGSWIHD 1796
Query: 1790 RDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQ 1849
R+EGEDEQVLQPKIKRKRSIR+RPRHT+ERP+E+S + + RGD+ LLPFQ D+KY AQ
Sbjct: 1797 REEGEDEQVLQPKIKRKRSIRLRPRHTMERPDEKSGIE--VQRGDACLLPFQGDHKYQAQ 1854
Query: 1850 LRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTED 1909
LRTD EMK GE N RHDQS+ SSK+RR +PSR+IAN K AS K+ RL+ ED
Sbjct: 1855 LRTDAEMKGFGEPNPSRHDQSD-SSKNRRTIPSRRIANTSKLHASPKSSRLHMQAAPPED 1913
Query: 1910 AADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLW 1969
AA+H +ESWDGK+ NASGSS +KMSDVIQRRCKNVISKLQRRI+KEG IVP+LTDLW
Sbjct: 1914 AAEHSRESWDGKVTNASGSSVLGSKMSDVIQRRCKNVISKLQRRIDKEGQHIVPVLTDLW 1973
Query: 1970 KRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRS 2029
KR+E+SGY+SGAGNN+LDLRKI+ RVDRLEYNGVMELV DVQFMLKGAMQFY FSHE RS
Sbjct: 1974 KRMESSGYMSGAGNNLLDLRKIETRVDRLEYNGVMELVVDVQFMLKGAMQFYTFSHEARS 2033
Query: 2030 EARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQTTVGQSKRHKIINE 2089
EARKVHDLFFD+LKIAFPDTDFREAR+ALSF+ PLSTS S PSPRQ VGQSKRH++INE
Sbjct: 2034 EARKVHDLFFDILKIAFPDTDFREARNALSFSNPLSTSSSAPSPRQAAVGQSKRHRLINE 2093
Query: 2090 MEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQKESRLGSGSGSSREQSQPDDSP-HPGELV 2148
+EP KP QRGS+P +D+R++V +P KE+R G+GSGS+REQ Q DDSP HPGELV
Sbjct: 2094 VEPDNGSAHKPIQRGSIPSGDDTRVKVHLP-KETRHGTGSGSTREQYQQDDSPLHPGELV 2152
Query: 2149 ICKKKRKDREKSVVKPR-SVSGPVSPPSLGRNIKSPGLGLVPKDMRHTQQTTHQHGWANQ 2207
ICKKKRKDR+KS+ K R SGPVSPPS+ R I SP G ++ R +QQ HQ GW NQ
Sbjct: 2153 ICKKKRKDRDKSMAKSRPGSSGPVSPPSMARTITSPVQGSASRETRMSQQNPHQQGWGNQ 2212
Query: 2208 PAQPANG----GSGAVGWANPVKRLRTDAGKRRPSQL 2240
P QPAN G G+VGWANPVKRLRTDAGKRRPS L
Sbjct: 2213 P-QPANNGRGGGGGSVGWANPVKRLRTDAGKRRPSHL 2248
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489634|ref|XP_002276245.2| PREDICTED: ATP-dependent helicase BRM-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3390 bits (8790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1779/2275 (78%), Positives = 1951/2275 (85%), Gaps = 47/2275 (2%)
Query: 1 MQSGGGPSRNRAAS------TSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQ 54
MQSGGGP RN A ++S+ASPSSSSSAVSTPHLGFDS+QQQQQ QQQQ RQ Q
Sbjct: 1 MQSGGGPGRNPAVGPPGRATSTSSASPSSSSSAVSTPHLGFDSIQQQQQQQQQQSRQSLQ 60
Query: 55 QQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHA---ISQ 111
QQ+LRKP+GNEA+LAY G L G+MGGGNFAS SMQ PQQ RKF D AQQH I +
Sbjct: 61 QQLLRKPEGNEALLAYPGGGLQGVMGGGNFASSSSSMQLPQQPRKFIDLAQQHGASHIRE 120
Query: 112 ESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQQAKLGMLGPASGKDQDMRM 170
++QN+SQGVE +LNPVHQAY+QYA QA QKSA +Q QQQAK+GM+GP S KDQD RM
Sbjct: 121 DNQNKSQGVEQPVLNPVHQAYLQYAFQAAHQKSALGMQPQQQAKMGMVGPPSWKDQDARM 180
Query: 171 GNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGG 230
GNLKMQ+LIS+Q+ANQAQASSSK +E + RGEKQMEQ Q +SDQ+ E KPP+ T G
Sbjct: 181 GNLKMQDLISIQAANQAQASSSKKPAEHYARGEKQMEQVQAPISDQRSESKPPTMPTAVG 240
Query: 231 QGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---WALERNIDLSQPANASLIAQL 287
Q M N+ RPMQ+ Q+QQSIQN A NQLA+AAQLQA WALERNIDLS PANA+L+AQL
Sbjct: 241 QLMPGNVTRPMQSVQNQQSIQNMANNQLAVAAQLQAMQAWALERNIDLSLPANANLMAQL 300
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAK 347
IP+MQ+R+V K NESNMGA SPV KQQVTSP +A ENSPH NSSSDVSGQSGSAK
Sbjct: 301 IPLMQTRMVTQPKPNESNMGAQPSPVQGPKQQVTSPPVASENSPHGNSSSDVSGQSGSAK 360
Query: 348 ARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
AR TV PSP GS +AA+VNN NNI +QQFSV GR++QVP RQ V IGNG+ P+HPPQ S
Sbjct: 361 ARQTVPPSPFGSNPNAAIVNNTNNIPVQQFSVQGRESQVPPRQSVVIGNGMSPMHPPQPS 420
Query: 408 LNMTPGVDQPLPVKNS-SGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQ 466
+NM+ GVD PL KN+ SG E+ QMQYLRQLNRSSPQSA+P +DG N++ SQGG Q
Sbjct: 421 VNMSQGVDHPLHAKNTLSGQESLQMQYLRQLNRSSPQSAVPPNDGGLGNHYQSQGGPLPQ 480
Query: 467 MPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPA 526
+PQQR GFTK QLHVLKAQILAFRRLKKGEGTLPQELLR+I PP LE Q QQ FLP+
Sbjct: 481 VPQQRFGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRSIAPPPLESQ---LQQAFLPS 537
Query: 527 AVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQ-GM 585
NQD+ +GK ED R LESN KD+QAV S+N + KEEA+AGDDKA S V G
Sbjct: 538 TAINQDKSAGKNVEDHGRQLESNEKDSQAVPSTNGHNFSKEEAFAGDDKATPSTVHMPGA 597
Query: 586 SAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACD 645
V KEP PV+ GKEE Q SVKSDQE E G+ +T +SDF DRGK+VAPQV D
Sbjct: 598 PTVMKEPIPVLSAGKEEPQTTAFSVKSDQEFERGIQKTPIRSDFAPDRGKAVAPQVGVPD 657
Query: 646 AVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDV 705
++QVKKP Q ++ Q KD G+ RKYHGPLFDFPFFTRKHDS GS MVN+++NLTLAYDV
Sbjct: 658 SLQVKKPVQTSSTPQQKDAGSTRKYHGPLFDFPFFTRKHDSFGSAMMVNNNSNLTLAYDV 717
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRL 765
KDLL EEG+EVL KKR+ENLKKISG+LAVNLERKRIRPDLVLRLQIE++KLRLLDLQ+RL
Sbjct: 718 KDLLFEEGMEVLNKKRTENLKKISGLLAVNLERKRIRPDLVLRLQIEERKLRLLDLQARL 777
Query: 766 RDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
RDEVDQQQQEIMAMPDR YRKFVRLCERQR+ELMRQVQ SQKAMREKQLKSI QWRKKLL
Sbjct: 778 RDEVDQQQQEIMAMPDRPYRKFVRLCERQRMELMRQVQVSQKAMREKQLKSIFQWRKKLL 837
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
EAHWAIRDARTARNRGVAKYHER+LREFSKRKDDDRN+RMEALKNNDVERYREMLLEQQT
Sbjct: 838 EAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNRRMEALKNNDVERYREMLLEQQT 897
Query: 886 SIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEE 945
SIPGDAAERYAVLSSFLTQTEEYL+KLGSKITAAKNQQEVEEAANAAAAAAR QGLSEEE
Sbjct: 898 SIPGDAAERYAVLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAANAAAAAARAQGLSEEE 957
Query: 946 VRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQ 1005
VR+AA CAGEEVMIRNRF+EMNAP++ SSVNKYY+LAHAVNERVMRQPSMLRAGTLRDYQ
Sbjct: 958 VRTAATCAGEEVMIRNRFIEMNAPKESSSVNKYYTLAHAVNERVMRQPSMLRAGTLRDYQ 1017
Query: 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065
+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW
Sbjct: 1018 LVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1077
Query: 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKY 1125
KSELH WLPSVSCIYYVG KDQRS+LFSQEV A+KFNVLVTTYEFIMYDRSKLSKVDWKY
Sbjct: 1078 KSELHNWLPSVSCIYYVGGKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKY 1137
Query: 1126 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1185
IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA
Sbjct: 1138 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1197
Query: 1186 FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1245
FHDWFS+PFQKEGPTHNA+DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS
Sbjct: 1198 FHDWFSKPFQKEGPTHNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1257
Query: 1246 IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305
IVLRC+MSAIQ AIYDWIK+TGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK C
Sbjct: 1258 IVLRCKMSAIQGAIYDWIKSTGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKAC 1317
Query: 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1365
NHPLLNYPYF+D SKDFLV+SCGK+WILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ
Sbjct: 1318 NHPLLNYPYFNDFSKDFLVRSCGKMWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1377
Query: 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1425
WR+LVYRRIDGTTSLEDRESAIVDFNS SDCFIFLLSIRAAGRGLNLQSADTV+IYDPD
Sbjct: 1378 WRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQSADTVVIYDPD 1437
Query: 1426 PNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDR 1485
PNPKNEEQAVARAHRIGQ REVKVIYMEAVVDKISSHQKEDE RSGGTVD EDDLAGKDR
Sbjct: 1438 PNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKISSHQKEDEFRSGGTVDSEDDLAGKDR 1497
Query: 1486 YIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV 1545
YIGSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQETVHDV
Sbjct: 1498 YIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDV 1557
Query: 1546 PSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK 1605
PSLQEVNRMIARSEDEVELFDQMDEE WIE+MTRYDQVPKWLRAST++VN +ANLSKK
Sbjct: 1558 PSLQEVNRMIARSEDEVELFDQMDEELNWIEDMTRYDQVPKWLRASTRDVNIAVANLSKK 1617
Query: 1606 PSKNILFGSNIGVDSGEI------ETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERN 1658
PSKN F +NIG++S E +TERKRG PKGK P Y+E+DDE GE+SEASSDERN
Sbjct: 1618 PSKNTFFAANIGLESSEKGSDLSPKTERKRGRPKGK--PVYRELDDENGEFSEASSDERN 1675
Query: 1659 GYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVE 1718
GY EEEGEIGEFED+E+SGAVGA SNKDQSEEDG +C+GGY+YLR E+TRN H+++
Sbjct: 1676 GYSAHEEEGEIGEFEDEEFSGAVGAQPSNKDQSEEDGRICDGGYEYLRALESTRNKHILD 1735
Query: 1719 EAGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSH 1777
EAGSSGSSS+SRRLTQ+VSP +S +KFGSLSAL+ARP SLSKR+PDELEEGEIAVSGDSH
Sbjct: 1736 EAGSSGSSSDSRRLTQMVSPSISSRKFGSLSALDARPSSLSKRLPDELEEGEIAVSGDSH 1795
Query: 1778 MDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTD-TPLHRGDSS 1836
MDHQQSGSW HDRDEGEDEQVLQPKIKRKRSIR+RPRHTVERPEE+S + + L RGDSS
Sbjct: 1796 MDHQQSGSWIHDRDEGEDEQVLQPKIKRKRSIRIRPRHTVERPEEKSSNEKSSLQRGDSS 1855
Query: 1837 LLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK 1896
LP Q+D+KY AQLR+D E K GESN+ +HDQS+ S KSRRNLPSRKI N K AS K
Sbjct: 1856 QLPMQVDHKYEAQLRSDPEAKLFGESNAFKHDQSDSSLKSRRNLPSRKIGNTSKLHASPK 1915
Query: 1897 TGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEK 1956
+G+LNCM ED A+H +E WDGK+ N G +M +++QR+CKNVISKLQRRI+K
Sbjct: 1916 SGKLNCMSARAEDVAEHSREGWDGKVMNTGG-----PRMPEIMQRKCKNVISKLQRRIDK 1970
Query: 1957 EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016
EGHQIVPLLTD WKR+E SGY+SG GNNILDLRKIDQR+DRLEY GVMELV DVQ MLK
Sbjct: 1971 EGHQIVPLLTDWWKRVENSGYISGPGNNILDLRKIDQRIDRLEYIGVMELVFDVQQMLKN 2030
Query: 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQT 2076
+MQ+YG SHEVR EARKVH+LFF++LKIAFPDTDFREAR+A+SF+GP+ST S PSPRQ
Sbjct: 2031 SMQYYGLSHEVRVEARKVHELFFNILKIAFPDTDFREARNAISFSGPVSTPASAPSPRQA 2090
Query: 2077 TVGQSKRHKIINEMEPGPSPPQKPPQRG-------SVPVSEDSRIRVQIPQKESRLGSGS 2129
VGQ KRHK INE+EP PSPP K RG + SED+R + I QKESRLGS S
Sbjct: 2091 AVGQGKRHKPINEVEPDPSPPPKQLLRGAAAAAAAAAAASEDTRAKSHISQKESRLGS-S 2149
Query: 2130 GSSREQSQPDDSPHPGELVICKKKRKDREKSVVKPRS-VSGPVSPPSLGRNIKSPGLGLV 2188
S + P + HPG+LVI KKKRKDREKS KPRS SGPVSPPS+GR+I+SPG G +
Sbjct: 2150 SSRDQDDSPLLT-HPGDLVISKKKRKDREKSAAKPRSGSSGPVSPPSMGRSIRSPGPGSM 2208
Query: 2189 PKDMRHTQQTTHQHGWANQPAQPAN---GGSGAVGWANPVKRLRTDAGKRRPSQL 2240
KD R TQQ THQ WA+QPAQ AN GG G VGWANPVKR+RTDAGKRRPS L
Sbjct: 2209 QKDGRSTQQATHQQAWASQPAQQANGGSGGGGTVGWANPVKRMRTDAGKRRPSHL 2263
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064045|ref|XP_002301364.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222843090|gb|EEE80637.1| chromatin remodeling complex subunit [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3371 bits (8741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1721/2218 (77%), Positives = 1893/2218 (85%), Gaps = 49/2218 (2%)
Query: 33 LGFDSLQQQQQHQQQQQRQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQ 92
LGFDS+QQQQQ +Q QQQ+LRKP+GNEA+LAYQ G+L G+ G NFAS PGSMQ
Sbjct: 44 LGFDSVQQQQQQPRQAL----QQQLLRKPEGNEALLAYQAGALQGVTVGNNFASSPGSMQ 99
Query: 93 PPQQSRKFFDFAQQHAISQESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQ 151
PQQSR+FFD A+QH SQ+ QNR+QGVE Q LNP+ QAY+QYA QA QQKSA +QSQQ
Sbjct: 100 TPQQSRQFFDLARQHGSSQDGQNRNQGVEQQALNPMQQAYLQYAFQAAQQKSALAMQSQQ 159
Query: 152 QAKLGMLGPASGKDQDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQ 211
QAK+GMLGP +GKDQD+RMGNLKMQEL+SMQ+ANQAQASSSKNSS+ F R EKQ+EQ Q
Sbjct: 160 QAKIGMLGPTAGKDQDIRMGNLKMQELMSMQAANQAQASSSKNSSDHFSRSEKQVEQGQH 219
Query: 212 QVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---WA 268
SDQ+ E K P Q T GQ M AN+ RPMQA Q +IQN A N LAM AQLQA WA
Sbjct: 220 LASDQRNEQKSPLQPTATGQLMPANVTRPMQAPQ---TIQNMANNHLAMTAQLQAIQAWA 276
Query: 269 LERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGE 328
LERNIDLSQPAN +L+AQLIP MQ+R+ A KANESN GA SS + VSK QV SP+IA E
Sbjct: 277 LERNIDLSQPANVNLMAQLIPFMQARMAAQLKANESNPGAQSSHLLVSKPQVASPSIASE 336
Query: 329 NSPHANSSSDVSGQSGSAKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPS 388
+SP ANSSSDVSGQSG+AKAR TV P GST+S +VNN +N+++QQ + H R+NQ P
Sbjct: 337 SSPRANSSSDVSGQSGTAKARQTVPSGPFGSTSSGGMVNNPSNLAMQQQAFHSRENQAPP 396
Query: 389 RQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNS-SGPENSQMQYLRQLNRSSPQSAIP 447
RQ +GNG+P N GVDQ LP KN+ + E SQ + RQLNRSSPQSA P
Sbjct: 397 RQTAVLGNGMPA--------NTGQGVDQILPSKNALNSSETSQARQFRQLNRSSPQSAGP 448
Query: 448 SSDGSSANNFSSQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
S++G S N FSSQGG A QM QQR GFTK Q HVLKAQILAFRRLKKGEGTLPQELLRAI
Sbjct: 449 STEGGSGNRFSSQGGPAVQMAQQRTGFTKQQSHVLKAQILAFRRLKKGEGTLPQELLRAI 508
Query: 508 VPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKE 567
+ + QQQ LPA +NQDR GKI E+Q H ESN KD QA+ S N Q++ KE
Sbjct: 509 ---APPPLELQLQQQLLPAGGSNQDRPGGKIPEEQASHPESNDKDLQAMPSMNGQNVSKE 565
Query: 568 EAYAGDDKAAVSPVG-QGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQ 626
E + GD+KAAVS + Q AV KEP P+V GKEEQQ SVKSDQE E GL +
Sbjct: 566 EVFTGDEKAAVSTINMQKAPAVMKEPMPLVASGKEEQQTATFSVKSDQESEHGLQKAPVI 625
Query: 627 SDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDS 686
SD +DRGK VAPQ A DA Q KKPAQ +T Q KD G+ RKYHGPLFDFPFFTRKHDS
Sbjct: 626 SDLASDRGKGVAPQFPASDAAQAKKPAQVSTVPQTKDSGSTRKYHGPLFDFPFFTRKHDS 685
Query: 687 VGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLV 746
VGST +VN++NNLTLAYDVKDLL EEG+E+L +KR ENLKKI+G+LAVNLERKRIRPDLV
Sbjct: 686 VGSTGIVNTNNNLTLAYDVKDLLFEEGVEMLTRKRLENLKKINGLLAVNLERKRIRPDLV 745
Query: 747 LRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQ 806
LRLQIE+KKL+LLDLQ+RLRDEVDQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQ
Sbjct: 746 LRLQIEEKKLKLLDLQARLRDEVDQQQQEIMAMPDRLYRKFVRLCERQRMELTRQVQASQ 805
Query: 807 KAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRME 866
KA+REKQLKSI QWRKKLLE+HWAIRD+RTARNRGVAKYHER+LREFSKRKDDDRNKRME
Sbjct: 806 KAIREKQLKSIMQWRKKLLESHWAIRDSRTARNRGVAKYHERMLREFSKRKDDDRNKRME 865
Query: 867 ALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVE 926
ALKNNDVERYREMLLEQQTSI GDA+ERYAVLSSFLTQTEEYL+KLG KITA KNQQE
Sbjct: 866 ALKNNDVERYREMLLEQQTSISGDASERYAVLSSFLTQTEEYLHKLGGKITATKNQQE-- 923
Query: 927 EAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVN-KYYSLAHAV 985
GLSEEEVR+AAAC EEVMIRNRF+EMNAPRD SSVN +YY+LAHAV
Sbjct: 924 -------------GLSEEEVRAAAACTSEEVMIRNRFMEMNAPRDSSSVNNRYYNLAHAV 970
Query: 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045
NERV+RQPSMLR GTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME
Sbjct: 971 NERVIRQPSMLRTGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1030
Query: 1046 FKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLV 1105
FKGNYGPHLIIVPNAVLVNWKSELH WLPSVSCIYYVG KDQR++LFSQEV+A+KFNVLV
Sbjct: 1031 FKGNYGPHLIIVPNAVLVNWKSELHSWLPSVSCIYYVGGKDQRAKLFSQEVSAMKFNVLV 1090
Query: 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDL 1165
TTYEFIMYDR+KLSK+DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDL
Sbjct: 1091 TTYEFIMYDRTKLSKLDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDL 1150
Query: 1166 KELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225
KELWSLLNLLLPEVFDNRKAFHDWFS+PFQ+E P H+ +DDWLETEKKVIIIHRLHQILE
Sbjct: 1151 KELWSLLNLLLPEVFDNRKAFHDWFSKPFQREAPVHDGEDDWLETEKKVIIIHRLHQILE 1210
Query: 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPI 1285
PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQS IYDWIK+TGT+RVDPEDEKRRVQKNP
Sbjct: 1211 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSTIYDWIKSTGTIRVDPEDEKRRVQKNPA 1270
Query: 1286 YQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGH 1345
YQAKVY+TLNNRCMELRKTCNHPLLNYPYF+DLSKDFLVKSCGKLW+LDRILIKLQRTGH
Sbjct: 1271 YQAKVYRTLNNRCMELRKTCNHPLLNYPYFNDLSKDFLVKSCGKLWVLDRILIKLQRTGH 1330
Query: 1346 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405
RVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFNS SDCFIFLLSIR
Sbjct: 1331 RVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPGSDCFIFLLSIR 1390
Query: 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE 1465
AAGRGLNLQSADTV+IYDPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVV+KISS QKE
Sbjct: 1391 AAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVNKISSCQKE 1450
Query: 1466 DELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERR 1525
DELRSGGTVDLEDDL GKDRY+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR
Sbjct: 1451 DELRSGGTVDLEDDLVGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERR 1510
Query: 1526 MTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVP 1585
MTLETLLHDEERYQET+HDVPSLQEVNRMIARSEDEVELFDQMDEEF WIEEMTRYDQVP
Sbjct: 1511 MTLETLLHDEERYQETLHDVPSLQEVNRMIARSEDEVELFDQMDEEFDWIEEMTRYDQVP 1570
Query: 1586 KWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDD 1644
KWLRASTKEV+ATIA LSKKPSK ILF +G+ SGE+ETERKRG PKGKK PNYKE+D+
Sbjct: 1571 KWLRASTKEVDATIAVLSKKPSKAILFADGMGMASGEMETERKRGRPKGKKSPNYKEIDE 1630
Query: 1645 EIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDY 1704
E G+YSEASSDERNGY EEEGEI EFEDDE S AVGAP NKDQSE+DGP C+GGY+Y
Sbjct: 1631 ETGDYSEASSDERNGYSAHEEEGEIREFEDDESSDAVGAPPVNKDQSEDDGPACDGGYEY 1690
Query: 1705 LRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDE 1764
+ E+TRN+H ++EAGSSGSSS+S+R+T+++SPVSPQKFGSLSALEARPGSLSK++PDE
Sbjct: 1691 HQAVESTRNDHALDEAGSSGSSSDSQRMTRMISPVSPQKFGSLSALEARPGSLSKKLPDE 1750
Query: 1765 LEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERS 1824
LEEGEIAVSGDSHMDHQQSGSW HDRDEGEDEQVLQPKIKRKRSIR+RPR TVE+PEE+S
Sbjct: 1751 LEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQPKIKRKRSIRLRPRLTVEKPEEKS 1810
Query: 1825 CTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRK 1884
D + RGDS LLPFQ+DNKY AQL++DTEMKA E + +HDQS+ SS+SRRNLPSR+
Sbjct: 1811 SND--VQRGDSFLLPFQVDNKYQAQLKSDTEMKALVEPSGFKHDQSD-SSRSRRNLPSRR 1867
Query: 1885 IANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCK 1944
IA K RAS K+ RLN EDAA+H +ESWDGK+ + SG+S KMSDVIQRRCK
Sbjct: 1868 IAKTSKLRASPKSSRLNLQSAPAEDAAEHSRESWDGKVPSTSGASTL-GKMSDVIQRRCK 1926
Query: 1945 NVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVM 2004
NVISK QRRI+KEG QIVPLL DLWKRIE GY+SGAG N+LDLRKI+QRVDRLEY+GVM
Sbjct: 1927 NVISKFQRRIDKEGQQIVPLLADLWKRIENPGYISGAGTNLLDLRKIEQRVDRLEYSGVM 1986
Query: 2005 ELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPL 2064
ELV DVQFMLKGAMQFYGFSHEVR+EARKVHDLFFD+LKIAFPDTDFREAR SF+GP
Sbjct: 1987 ELVFDVQFMLKGAMQFYGFSHEVRTEARKVHDLFFDILKIAFPDTDFREARDTFSFSGPS 2046
Query: 2065 STSVSTPSPRQTTVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQKESR 2124
STS+S PSP+Q +G KRHK IN++EP S KP QRGS+P +D+R RV +PQKE+R
Sbjct: 2047 STSISAPSPKQAALGLIKRHKSINDVEPDNSTTHKPMQRGSIPTGDDTR-RVHVPQKETR 2105
Query: 2125 LGSGSGSSREQSQPDDSP-HPGELVICKKKRKDREKSVVKPRS-VSGPVSPPSLGRNIKS 2182
LGSGSGSSREQ DDSP HPGELVICKKKRKDR+KSVV+ R+ SGPVSPPS+GRNI S
Sbjct: 2106 LGSGSGSSREQYPQDDSPLHPGELVICKKKRKDRDKSVVRSRTGSSGPVSPPSMGRNITS 2165
Query: 2183 PGLGLVPKDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRRPSQL 2240
P L +PKD R QQ THQ GW NQP QP NGG+G+VGWANPVKRLRTDAGKRRPS L
Sbjct: 2166 PILSSIPKDARPNQQNTHQQGWVNQP-QPTNGGAGSVGWANPVKRLRTDAGKRRPSHL 2222
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147789690|emb|CAN74059.1| hypothetical protein VITISV_024679 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3315 bits (8595), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1755/2278 (77%), Positives = 1926/2278 (84%), Gaps = 78/2278 (3%)
Query: 1 MQSGGGPSRNRAAS------TSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQ 54
MQSGGGP RN A ++S+ASPSSSSSAVSTPHLGFDS+QQQQQ QQQQ RQ Q
Sbjct: 1 MQSGGGPGRNPAVGPPGRATSTSSASPSSSSSAVSTPHLGFDSIQQQQQQQQQQSRQSLQ 60
Query: 55 QQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHA---ISQ 111
QQ+LRKP+GNEA+LAY G L G+MGGGNFAS GSMQ PQQ RKF D AQQH I +
Sbjct: 61 QQLLRKPEGNEALLAYPGGGLQGVMGGGNFASSSGSMQLPQQPRKFIDLAQQHGASHIRE 120
Query: 112 ESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQQAKLGMLGPASGKDQDMRM 170
++QN+SQGVE +LNPVHQAY+QYA QA QKSA +Q QQQAK+GM+GP S KDQD RM
Sbjct: 121 DNQNKSQGVEQPVLNPVHQAYLQYAFQAAHQKSALGMQPQQQAKMGMVGPPSWKDQDARM 180
Query: 171 GNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGG 230
GNLKMQ+LIS+Q+ANQAQASSSK +E + RGEKQMEQ Q +SDQ+ E KPP+ T G
Sbjct: 181 GNLKMQDLISIQAANQAQASSSKKPAEHYARGEKQMEQVQAPISDQRSESKPPTMPTAVG 240
Query: 231 QGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---WALERNIDLSQPANASLIAQL 287
Q M N+ RPMQ+ Q+QQSIQN A NQLA+AAQLQA WALERNIDLS PANA+L+AQL
Sbjct: 241 QLMPGNVTRPMQSVQNQQSIQNMANNQLAVAAQLQAMQAWALERNIDLSLPANANLMAQL 300
Query: 288 IPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAK 347
IP+MQ+R+V K NESNMGA SPV KQQVTSP +A ENSPH NSSSDVSGQSGSAK
Sbjct: 301 IPLMQTRMVTQPKPNESNMGAQPSPVQGPKQQVTSPPVASENSPHGNSSSDVSGQSGSAK 360
Query: 348 ARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
AR TV PSP GS +AA+VNN NNI +QQFSV GR++QVP RQ V IGNG+ P+HPPQ S
Sbjct: 361 ARQTVPPSPFGSNPNAAIVNNTNNIPVQQFSVQGRESQVPPRQSVVIGNGMSPMHPPQPS 420
Query: 408 LNMTPGVDQPLPVKNS-SGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQ 466
+NM+ GVD PL KN+ SG E+ QMQYLRQLNRSSPQSA+P +DG N++ SQGG Q
Sbjct: 421 VNMSQGVDHPLHAKNTLSGQESLQMQYLRQLNRSSPQSAVPPNDGGLGNHYQSQGGPLPQ 480
Query: 467 MPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPA 526
+PQQR GFTK QLHVLKAQILAFRRLKKGEGTLPQELLR+I PP LE Q QQ FLP+
Sbjct: 481 VPQQRFGFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRSIAPPPLESQ---LQQAFLPS 537
Query: 527 AVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVGQ-GM 585
NQD+ +GK ED R LESN KD+QAV S+N + KEEA+AGDDKA S V G
Sbjct: 538 TAINQDKSAGKNVEDHGRQLESNEKDSQAVPSTNGHNFSKEEAFAGDDKATPSTVHMPGA 597
Query: 586 SAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACD 645
V KEP PV+ GKEE Q SVKSDQE E G+ +T +SDF DRGK+VAPQV D
Sbjct: 598 PTVMKEPIPVLSAGKEEPQTTAFSVKSDQEXERGIQKTPIRSDFAPDRGKAVAPQVGVSD 657
Query: 646 AVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDV 705
++QVKKP Q ++ Q KD G+ RKYHGPLFDFPFFTRKHDS GS MVN+++NLTLAYDV
Sbjct: 658 SLQVKKPVQTSSTPQQKDAGSTRKYHGPLFDFPFFTRKHDSFGSAMMVNNNSNLTLAYDV 717
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRL 765
KDLL EEG+EVL KKR+ENLKKISG+LAVNLERKRIRPDLVLRLQIE++KLRLLDLQ+RL
Sbjct: 718 KDLLFEEGMEVLNKKRTENLKKISGLLAVNLERKRIRPDLVLRLQIEERKLRLLDLQARL 777
Query: 766 RDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
RDEVDQQQQEIMAMPDR YRKFVRLCERQR+ELMRQVQ SQKAMREKQLKSI QWRKKLL
Sbjct: 778 RDEVDQQQQEIMAMPDRPYRKFVRLCERQRMELMRQVQVSQKAMREKQLKSIFQWRKKLL 837
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
EAHWAIRDARTARNRGVAKYHER+LREFSKRKDDDRN+RMEALKNNDVERYREMLLEQQT
Sbjct: 838 EAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNRRMEALKNNDVERYREMLLEQQT 897
Query: 886 SIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQ---GLS 942
SIPGDAAERYAVLSSFLTQTEEYL+KLGSKITAAKNQQEVEEAANAAAAAAR Q GLS
Sbjct: 898 SIPGDAAERYAVLSSFLTQTEEYLHKLGSKITAAKNQQEVEEAANAAAAAARAQACFGLS 957
Query: 943 EEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLR 1002
EEEVR+AA CAGEEVMIRNRF+EMNAP++ SSVNKYY+LAHAVNERVMRQPSMLRAGTLR
Sbjct: 958 EEEVRTAATCAGEEVMIRNRFIEMNAPKESSSVNKYYTLAHAVNERVMRQPSMLRAGTLR 1017
Query: 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062
DYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL
Sbjct: 1018 DYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1077
Query: 1063 VNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVD 1122
VNWK EV A+KFNVLVTTYEFIMYDRSKLSKVD
Sbjct: 1078 VNWK----------------------------EVCAMKFNVLVTTYEFIMYDRSKLSKVD 1109
Query: 1123 WKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN 1182
WKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN
Sbjct: 1110 WKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN 1169
Query: 1183 RKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPP 1242
RKAFHDWFS+PFQKEGPTHNA+DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPP
Sbjct: 1170 RKAFHDWFSKPFQKEGPTHNAEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPP 1229
Query: 1243 KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302
KVSIVLRC+MSAIQ AIYDWIK+TGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR
Sbjct: 1230 KVSIVLRCKMSAIQGAIYDWIKSTGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1289
Query: 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEE 1362
K CNHPLLNYPYF+D SKDFLV+SCGK+WILDRILIKLQRTGHRVLLFSTMTKLLDILEE
Sbjct: 1290 KACNHPLLNYPYFNDFSKDFLVRSCGKMWILDRILIKLQRTGHRVLLFSTMTKLLDILEE 1349
Query: 1363 YLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1422
YLQWR+LVYRRIDGTTSLEDRESAIVDFNS SDCFIFLLSIRAAGRGLNLQSADTV+IY
Sbjct: 1350 YLQWRRLVYRRIDGTTSLEDRESAIVDFNSAGSDCFIFLLSIRAAGRGLNLQSADTVVIY 1409
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAG 1482
DPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVVDKISSHQKEDE RSGGTVD EDDLAG
Sbjct: 1410 DPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKISSHQKEDEFRSGGTVDSEDDLAG 1469
Query: 1483 KDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETV 1542
KDRYIGSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQETV
Sbjct: 1470 KDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETV 1529
Query: 1543 HDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANL 1602
HDVPSLQEVNRMIARSEDEVELFDQMDEE WIE+MTRYDQVPKWLRAST++VN +ANL
Sbjct: 1530 HDVPSLQEVNRMIARSEDEVELFDQMDEELNWIEDMTRYDQVPKWLRASTRDVNIAVANL 1589
Query: 1603 SKKPSKNILFGSNIGVDSGEI------ETERKRG-PKGKKYPNYKEVDDEIGEYSEASSD 1655
SKKPSKN F +NIG++S E +TERKRG PKGK P Y+E+DDE GE+SEASSD
Sbjct: 1590 SKKPSKNTFFAANIGLESSEKGSDLSPKTERKRGRPKGK--PVYRELDDENGEFSEASSD 1647
Query: 1656 ERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNH 1715
ERNGY EEEGEIGEFED+E+SGAVGA SNKDQSEEDG +C+GGY+YLR E+TRN H
Sbjct: 1648 ERNGYSAHEEEGEIGEFEDEEFSGAVGAQPSNKDQSEEDGRICDGGYEYLRALESTRNKH 1707
Query: 1716 VVEEAGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSG 1774
+++EAGSSGSSS+SRRLTQ+VSP +S +KFGSLSAL+ARP SLSKR+PDELEEGEIAVSG
Sbjct: 1708 ILDEAGSSGSSSDSRRLTQMVSPSISSRKFGSLSALDARPSSLSKRLPDELEEGEIAVSG 1767
Query: 1775 DSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTD-TPLHRG 1833
DSHMDHQQSGSW HDRDEGEDEQVLQPKIKRKRSIR+RPRHTVERPEE+S + + L RG
Sbjct: 1768 DSHMDHQQSGSWIHDRDEGEDEQVLQPKIKRKRSIRIRPRHTVERPEEKSSNEKSSLQRG 1827
Query: 1834 DSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRA 1893
DSS LP Q+D+KY AQLR+D E K GESN+ +HDQS+ S KSRRNLPSRKI N K A
Sbjct: 1828 DSSQLPMQVDHKYEAQLRSDPEAKLFGESNAFKHDQSDSSLKSRRNLPSRKIGNTSKLHA 1887
Query: 1894 SLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRR 1953
S K+G+LNCM ED A+H +E WDGK+ N G +M +++QR+CKNVISKLQRR
Sbjct: 1888 SPKSGKLNCMSARAEDVAEHSREGWDGKVMNTGG-----PRMPEIMQRKCKNVISKLQRR 1942
Query: 1954 IEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013
I+KEGHQIVPLLTD WKR+E SGY+SG GNNILDLRKIDQR+DRLEY GVMELV DVQ M
Sbjct: 1943 IDKEGHQIVPLLTDWWKRVEXSGYISGPGNNILDLRKIDQRIDRLEYIGVMELVFDVQQM 2002
Query: 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSP 2073
LK +MQ+YG SHEVR EARKVH+LFF++LKIAFPDTDFREAR+A+SF+GP+ST S PSP
Sbjct: 2003 LKNSMQYYGLSHEVRVEARKVHELFFNILKIAFPDTDFREARNAISFSGPVSTPASAPSP 2062
Query: 2074 RQTTVGQSKRHKIINEMEPGPSPPQKPPQRG-------SVPVSEDSRIRVQIPQKESRLG 2126
RQ VGQ KRHK INE+EP PSPP K RG + SED+R + I QKESRLG
Sbjct: 2063 RQAAVGQGKRHKPINEVEPDPSPPPKQLLRGAAAAAAAAAAASEDTRAKSHISQKESRLG 2122
Query: 2127 SGSGSSREQSQPDDSPHPGELVICKKKRKDREKSVVKPRS-VSGPVSPPSLGRNIKSPGL 2185
S S S + P + HPG+LVI KKKRKDREKS KPRS SGPVSPPS+GR+I+SPG
Sbjct: 2123 S-SSSRDQDDSPLLT-HPGDLVISKKKRKDREKSAAKPRSGSSGPVSPPSMGRSIRSPGP 2180
Query: 2186 GLVPKDMRHTQQTTHQHGWANQPAQPAN---GGSGAVGWANPVKRLRTDAGKRRPSQL 2240
G + KD R TQQ THQ WA+QPAQ AN GG G VGWANPVKR+RTDAGKRRPS L
Sbjct: 2181 GSMQKDGRSTQQATHQQAWASQPAQQANGGSGGGGTVGWANPVKRMRTDAGKRRPSHL 2238
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560792|ref|XP_003548671.1| PREDICTED: ATP-dependent helicase BRM-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3186 bits (8260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1625/2223 (73%), Positives = 1860/2223 (83%), Gaps = 48/2223 (2%)
Query: 33 LGFDSLQQQQQHQQQQQ---RQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPG 89
LG DS+QQQQQ QQQQQ RQ FQQQ+LRKP+GNEA LAYQ G + G+ G NF+SP
Sbjct: 38 LGLDSMQQQQQQQQQQQIGSRQSFQQQLLRKPEGNEAFLAYQAG-IQGVFGSNNFSSP-S 95
Query: 90 SMQPPQQSRKFFDFAQQHAISQESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQ 148
+MQ PQQ RK +Q+ Q R QGVE Q+LNPVHQAY+QYAL A QQ+ +Q
Sbjct: 96 AMQLPQQPRKL-----HLGSNQDIQLRGQGVEQQMLNPVHQAYLQYALHAAQQRPTLGIQ 150
Query: 149 SQQQAKLGMLGPASGKDQDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQ 208
SQQQ K+GML AS +DQ+MRMGNLKMQ+++SMQ+ANQ Q SSS+NSSE+ RG+KQM+Q
Sbjct: 151 SQQQTKMGMLSSASLQDQEMRMGNLKMQDIMSMQAANQGQGSSSRNSSERGARGDKQMDQ 210
Query: 209 PQQQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA-- 266
QQ DQK E KP +Q G + N+IRPMQ + QQ IQN Q+A++AQLQA
Sbjct: 211 GQQMTPDQKSEGKPSTQGPTIGHLIPGNMIRPMQGPETQQGIQNVVNTQIAVSAQLQAMQ 270
Query: 267 -WALERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTI 325
WA ERNIDLS PANA L+AQLIP+MQSR+V+ K NESN+GA SSPVPVSKQQVTSP +
Sbjct: 271 AWARERNIDLSHPANAHLMAQLIPLMQSRMVSQSKVNESNIGAQSSPVPVSKQQVTSPAV 330
Query: 326 AGENSPHANSSSDVSGQSGSAKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQ 385
A E+S HANSSSD+SGQSGS+KAR T S LGS T+A + N ++++ QQF+VHGR++Q
Sbjct: 331 ASESSAHANSSSDMSGQSGSSKARQTAPSSHLGSITNAGIAGNSSDMATQQFNVHGRESQ 390
Query: 386 VPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVK-NSSGPENSQMQYLRQLNRSSPQS 444
P RQPV +GNG+P +H Q+S N G D PL K +SSGPE QMQY RQLN+S+PQ+
Sbjct: 391 APPRQPVVVGNGMPSMHSQQSSANTNLGADHPLNAKTSSSGPEPPQMQYTRQLNQSAPQA 450
Query: 445 AIPSSDGSSANNFSSQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELL 504
P+++G N SQG A QMPQQR FTK QLHVLKAQILAFRRLKKGEGTLPQELL
Sbjct: 451 GGPTNEGGLGNPAKSQGRPA-QMPQQRTNFTKQQLHVLKAQILAFRRLKKGEGTLPQELL 509
Query: 505 RAIVPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSL 564
RAIVPP LE+Q AQQ A NQD+ +G IA +Q+ +ES+ K+ Q++ S N QS
Sbjct: 510 RAIVPPPLEMQ---AQQPNHSARGQNQDKPAGNIAAEQISPIESSAKEPQSIPSINGQSS 566
Query: 565 PKEEAYAGDDKAAVSPVGQGMSA--VTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLR 622
K E++A D+K+ V PV A V+KE AP + GK++Q++ SVKS+Q+ EC +
Sbjct: 567 LKHESFARDEKSIVPPVHVQAVAPPVSKESAPTLSAGKKDQKSIGCSVKSNQDGEC-VNN 625
Query: 623 TQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTR 682
T +++ DRGK++APQ D +Q+KKP+Q +T QPKDVG RKYHGPLFDFPFFTR
Sbjct: 626 TTVRNELALDRGKAIAPQAPVSDTMQIKKPSQTSTGPQPKDVGPTRKYHGPLFDFPFFTR 685
Query: 683 KHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIR 742
KHDS GS+ M+N++NNL+LAYDVKDLL EEG+EVL KKR+ENLKKI G+LAVNLERKRIR
Sbjct: 686 KHDSFGSSMMLNNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLAVNLERKRIR 745
Query: 743 PDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQV 802
PDLVLRLQIE+KKLRL+DLQ+RLRDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQV
Sbjct: 746 PDLVLRLQIEEKKLRLVDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQV 805
Query: 803 QTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRN 862
Q SQ+A+REKQLKSI QWRKKLLEAHWAIRDARTARNRGVAKYHE++LREFSKRKDDDRN
Sbjct: 806 QASQRAVREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKRKDDDRN 865
Query: 863 KRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQ 922
KR+EALKNNDV+RYREMLLEQQTSIPGDAAERYAVLS+FLTQTEEYL+KLGSKITAAKNQ
Sbjct: 866 KRLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLTQTEEYLHKLGSKITAAKNQ 925
Query: 923 QEVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLA 982
QEVEEAA AAAAAARLQGLSEEEVR+AAACAGEEVMIRNRFLEMNAPRD SSVNKYY+LA
Sbjct: 926 QEVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLA 985
Query: 983 HAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1042
HAVNE V+RQPSMLRAGTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY
Sbjct: 986 HAVNETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1045
Query: 1043 LMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFN 1102
LMEFKGNYGPHLIIVPNAVLVNWKSE + WLPSVSCI+YVG+KD RS+LFSQEV A+KFN
Sbjct: 1046 LMEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGSKDHRSKLFSQEVCAMKFN 1105
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
VLVTTYEFIMYDRSKLSK+DWKYIIIDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQ
Sbjct: 1106 VLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQ 1165
Query: 1163 NDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
NDLKELWSLLNLLLPEVFDN+KAF+DWFS+PFQKEGPT N +DDWLETEKKVIIIHRLHQ
Sbjct: 1166 NDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGPTQNVEDDWLETEKKVIIIHRLHQ 1225
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1282
ILEPFMLRRRVEDVEGSLPPKVSIVL+C+MSA+QSAIYDW+K+TGTLR+DPEDEK ++ +
Sbjct: 1226 ILEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQSAIYDWVKSTGTLRLDPEDEKHKLHR 1285
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR 1342
NP YQ K YKTLNNRCMELRKTCNHPLLNYP+FSDLSK+F+V+SCGKLWILDRILIKLQR
Sbjct: 1286 NPAYQVKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVRSCGKLWILDRILIKLQR 1345
Query: 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402
TGHRVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFNS DSDCFIFLL
Sbjct: 1346 TGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLL 1405
Query: 1403 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 1462
SIRAAGRGLNLQSADTV+IYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKI+SH
Sbjct: 1406 SIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIASH 1465
Query: 1463 QKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE 1522
QKEDELRSGGTVD+ED+LAGKDRY+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHE
Sbjct: 1466 QKEDELRSGGTVDMEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHE 1525
Query: 1523 ERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYD 1582
ERR+TLETLLHDEERYQETVHDVPSLQEVNRMIARS++E+ELFDQMD+E WIEEMTRYD
Sbjct: 1526 ERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEIELFDQMDDELDWIEEMTRYD 1585
Query: 1583 QVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKE 1641
VPKWLRA+T+EVNA I LSK+ SKN L G +IG++S E +ERKRG PKGKK+PNYKE
Sbjct: 1586 HVPKWLRANTREVNAAIGALSKRSSKNTLLGGSIGIESSEFGSERKRGRPKGKKHPNYKE 1645
Query: 1642 VDDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGG 1701
+DDEI EYSE SSDERN Y EEGE+GEF+DD YS A G +KDQ EDG +C+ G
Sbjct: 1646 LDDEILEYSEVSSDERNEYA--HEEGEMGEFDDDGYSMADGVQTIDKDQL-EDGLLCDAG 1702
Query: 1702 YDYLRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKR 1760
Y++ + E+ RNN +VEEAG+SGSSS+S+R+ QIVSP VS QKFGSLSAL+ARP S+SKR
Sbjct: 1703 YEFPQSLESARNNQMVEEAGTSGSSSDSQRVRQIVSPSVSSQKFGSLSALDARPSSISKR 1762
Query: 1761 MPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVRPRHTVER 1819
M DELEEGEIAVSGDSHMDHQQSGSW HDRDEGEDEQVLQ PKIKRKRS+RVRPRH ER
Sbjct: 1763 MTDELEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATER 1822
Query: 1820 PEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN 1879
PEE+S ++ H L Q D+KY AQLRTD E K G+SN+ RH+Q+ P+ K++R
Sbjct: 1823 PEEKSGSEMASH------LAVQADHKYQAQLRTDPESKLFGDSNASRHEQNTPALKNKRT 1876
Query: 1880 LPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVI 1939
LPSR++AN K S K+ RLNCM ++DA DH +ESW+GK N+SGSS KM+++I
Sbjct: 1877 LPSRRVANTSKLHGSPKSSRLNCMSVPSQDAGDHSRESWEGKPINSSGSSAHGTKMTEII 1936
Query: 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLE 1999
QRRCKNVISKLQRRI+KEGH+IVPLL DLWKRIE SG+GN++LDLRKIDQR+D+ E
Sbjct: 1937 QRRCKNVISKLQRRIDKEGHEIVPLLMDLWKRIEN----SGSGNSLLDLRKIDQRIDKFE 1992
Query: 2000 YNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALS 2059
YNG ELV DVQFMLK AM FYGFSHEVR+EARKVHDLFF++LKIAFPDTDFR+ARSALS
Sbjct: 1993 YNGATELVFDVQFMLKSAMHFYGFSHEVRTEARKVHDLFFEILKIAFPDTDFRDARSALS 2052
Query: 2060 FTGPLSTSVSTPSPRQTTVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIP 2119
F+ + T SPRQ V QSKRH++INEME P Q+ QRGS E++RI+V +P
Sbjct: 2053 FSSQAAAGTVT-SPRQAAVSQSKRHRLINEMETESYPSQRSLQRGSASSGENNRIKVHLP 2111
Query: 2120 QKESRLGSGSGSSREQSQPDDS---PHPGELVICKKKRKDREKSVVKPRSVSGPVSPPSL 2176
Q+ESR GSG GSS + Q +DS HPGELV+CKK+R DREKS VKP+ +GPVSP S+
Sbjct: 2112 QRESRTGSGGGSSTREQQQEDSSLLAHPGELVVCKKRRNDREKSAVKPK--TGPVSPSSM 2169
Query: 2177 GRNIKSPGLGLVPKDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRR 2236
++PG VPK+ R TQQ +H GWA QP+Q NG G+VGWANPVKRLRTD+GKRR
Sbjct: 2170 ----RTPGPSSVPKEARLTQQGSHAQGWAGQPSQQPNGSGGSVGWANPVKRLRTDSGKRR 2225
Query: 2237 PSQ 2239
PS
Sbjct: 2226 PSH 2228
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432144|ref|XP_004133860.1| PREDICTED: ATP-dependent helicase BRM-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3162 bits (8198), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1663/2271 (73%), Positives = 1869/2271 (82%), Gaps = 55/2271 (2%)
Query: 1 MQSGGG-PSRN-------RAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQP 52
MQSGGG P RN A++TS+AASPSSSSSAVSTPHLGFDS+QQQQQ Q RQ
Sbjct: 1 MQSGGGGPLRNPGFPAGRAASTTSAAASPSSSSSAVSTPHLGFDSMQQQQQ--QLASRQS 58
Query: 53 FQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQH-AISQ 111
Q Q+LRK DGNEA+L+YQ G L G++ G NF PGS PQQ+RKF D AQQH SQ
Sbjct: 59 LQHQLLRKSDGNEALLSYQAGGLQGVLVGNNFPQSPGSSHLPQQARKFIDLAQQHHGTSQ 118
Query: 112 ESQNRSQGVEHQLLN-PVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRM 170
E QNRSQG+E Q LN P+HQAY+QYAL AQQKSA +QSQ QAK+G++ P S KDQ+MRM
Sbjct: 119 EGQNRSQGLEQQALNHPMHQAYLQYALAAQQKSAMAMQSQHQAKMGIMSPQSIKDQEMRM 178
Query: 171 GNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGG 230
GN K+QELI Q +NQA S SK SS+ F RGEKQMEQ SDQ+ + K SQ G
Sbjct: 179 GNQKIQELIPTQVSNQASTSLSKKSSDHFVRGEKQMEQGPPSTSDQRVDSKSSSQLPSMG 238
Query: 231 QGMAANIIRPMQAAQHQQSIQNAAGNQLAMAA--QLQAWALERNIDLSQPANASLIAQLI 288
+ N+ RPMQA Q Q I N A NQL MA +QAWALERNIDLS P+N ++++QL
Sbjct: 239 NMVPVNMTRPMQAPQGQPGILNMANNQLGMAQLQAVQAWALERNIDLSLPSNVNIVSQLF 298
Query: 289 PIMQSRIVANH-KANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAK 347
P++Q R++ H K NE+NMG SSP V KQQ+ S E S HANS SDVSGQS S K
Sbjct: 299 PMLQPRMLVPHQKPNENNMGQQSSPASVPKQQINSLFAGKEASAHANSLSDVSGQSSSTK 358
Query: 348 ARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
AR S +P G +A+VVNN ++ S+QQFSV G +NQ+ SR PV+ GN +PP+H ++S
Sbjct: 359 ARQIASTNPFGQNMNASVVNNTSHASMQQFSVPGMENQLSSRLPVS-GNTIPPVHSSESS 417
Query: 408 LNMTPGVDQPLPVKNSSG-PENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQ 466
N+ +++ L K S G PEN Q QY+RQ+NRSSPQ+A+P+SDG S+N+ QGG + Q
Sbjct: 418 GNVNQNIERSLQGKTSLGTPENVQTQYVRQVNRSSPQTALPTSDGGSSNSTLPQGGHSNQ 477
Query: 467 MPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPA 526
QQR GFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI PP L++QQQ QFLP
Sbjct: 478 TAQQRFGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLDVQQQ----QFLPP 533
Query: 527 AVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG-QGM 585
+QD+ SGK ED ++E+ KD+ +++SSN P+EE GD+K+ S Q M
Sbjct: 534 GSTSQDKSSGKTVED-TGNVEATEKDSLSLASSNGHRFPREEVSTGDEKSKTSTSDVQPM 592
Query: 586 SAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACD 645
KE PV GKEEQQ VS VKSDQE + G + ++DFP +RGK++A Q + D
Sbjct: 593 PPAMKETVPVASSGKEEQQTTVS-VKSDQETDRGCQKPPGKTDFPVERGKAIANQAAVPD 651
Query: 646 AVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDV 705
QVKKPA +T Q KDVGAARKYHGPLFDFP+FTRKHDS GS VN++NNLTLAYDV
Sbjct: 652 VTQVKKPAPPSTP-QSKDVGAARKYHGPLFDFPYFTRKHDSFGSAMAVNNNNNLTLAYDV 710
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRL 765
KDLL EEGLEV+ KKR+ENLKKI G+LAVNLERKRIRPDLV+RLQIE+KKLRLLDLQ+RL
Sbjct: 711 KDLLFEEGLEVINKKRTENLKKIGGLLAVNLERKRIRPDLVVRLQIEEKKLRLLDLQARL 770
Query: 766 RDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
RDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQKAMREKQLKS+ QWRKKLL
Sbjct: 771 RDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELTRQVQASQKAMREKQLKSVFQWRKKLL 830
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
EAHWAIRDARTARNRGVAKYHER+LREFSKRKDDDRN+RMEALKNNDVERYREMLLEQQT
Sbjct: 831 EAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNRRMEALKNNDVERYREMLLEQQT 890
Query: 886 SIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEE 945
S+PGDAAERY+VLSSFLTQTEEYL+KLGSKITAAK+QQEV EAAN AAAAARLQGLSEEE
Sbjct: 891 SMPGDAAERYSVLSSFLTQTEEYLHKLGSKITAAKSQQEVAEAANIAAAAARLQGLSEEE 950
Query: 946 VRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQ 1005
VR+AAACAGEEVMIRNRF+EMNAP+D S VNKYY+LAHAVNER++RQPSMLRAGTLRDYQ
Sbjct: 951 VRAAAACAGEEVMIRNRFMEMNAPKDSSYVNKYYNLAHAVNERIVRQPSMLRAGTLRDYQ 1010
Query: 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065
+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW
Sbjct: 1011 LVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1070
Query: 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKY 1125
KSELH WLPSVSCIYYVG KD+RS+LFSQEV ALKFNVLVTTYEFIMYDRSKLSK+DWKY
Sbjct: 1071 KSELHTWLPSVSCIYYVGGKDERSKLFSQEVCALKFNVLVTTYEFIMYDRSKLSKIDWKY 1130
Query: 1126 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1185
IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA
Sbjct: 1131 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1190
Query: 1186 FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1245
FHDWFS+PFQKEGPT NA+DDWLETEKK+IIIHRLHQILEPFMLRRRVEDVEGSLPPKVS
Sbjct: 1191 FHDWFSKPFQKEGPTPNAEDDWLETEKKIIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1250
Query: 1246 IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305
IVLRCRMSA QSA+YDWIKATGTLRVDPEDEK RVQKNP YQ KVYKTLNNRCMELRKTC
Sbjct: 1251 IVLRCRMSAFQSAVYDWIKATGTLRVDPEDEKLRVQKNPNYQPKVYKTLNNRCMELRKTC 1310
Query: 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1365
NHPLLNYPY+ D SKDFLV+SCGKLWILDRILIKLQ+TGHRVLLFSTMTKLLDILEEYLQ
Sbjct: 1311 NHPLLNYPYYGDFSKDFLVRSCGKLWILDRILIKLQKTGHRVLLFSTMTKLLDILEEYLQ 1370
Query: 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1425
WR+L+YRRIDGTTSLEDRESAIVDFNS DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD
Sbjct: 1371 WRRLIYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1430
Query: 1426 PNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDR 1485
PNPKNEEQAVARAHRIGQ REVKVIYMEAVVDK SS+QKEDELRSGG+ DLEDD AGKDR
Sbjct: 1431 PNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKFSSNQKEDELRSGGSGDLEDDFAGKDR 1490
Query: 1486 YIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV 1545
Y+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQETVHDV
Sbjct: 1491 YMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDV 1550
Query: 1546 PSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK 1605
PSLQEVNRMIARSEDEVELFDQMDEEF W EEMTRYDQ+PKWLRAST+EVN IANLSKK
Sbjct: 1551 PSLQEVNRMIARSEDEVELFDQMDEEFDWTEEMTRYDQIPKWLRASTREVNNAIANLSKK 1610
Query: 1606 PSKNILFGSNIGVDSGE------IETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERN 1658
PSKNILFG+ G++S E + TERKRG PKGKK PNYKE+DD+ GE+SEASSDERN
Sbjct: 1611 PSKNILFGAGYGLESSELGSDSSLRTERKRGRPKGKKIPNYKEMDDDNGEFSEASSDERN 1670
Query: 1659 GYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVE 1718
GY VQEEEGEI EFEDDEYS + A NKDQ EDGP C+ YDY P + RNNH++E
Sbjct: 1671 GYSVQEEEGEIAEFEDDEYSRGIEATQLNKDQM-EDGPDCDARYDY--PRDGARNNHLLE 1727
Query: 1719 EAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHM 1778
EAGSSGSSS+SRRLTQ+VSPVS QKFG LSAL+ARP SLSKR+PDELEEGEIA+SGDSHM
Sbjct: 1728 EAGSSGSSSSSRRLTQMVSPVSSQKFGFLSALDARPSSLSKRLPDELEEGEIAISGDSHM 1787
Query: 1779 DHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDT-PLHRGDSSL 1837
++QQS SW HDR++GE+EQVLQPKIKRKRS+R+RPR ER EE+ +T L GDSS
Sbjct: 1788 ENQQSESWIHDREDGEEEQVLQPKIKRKRSLRLRPRPPAERREEKIYNETQSLQYGDSSS 1847
Query: 1838 -LPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK 1896
PF D+K+ ++ + D E K +G+SNSL+H+Q+E SSK+RRNL +R++A + K +S K
Sbjct: 1848 PSPFLADHKF-SKFKNDPEAKPYGDSNSLKHEQNESSSKNRRNLSARRVAPSSKLHSSPK 1906
Query: 1897 TGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEK 1956
+ RLN + +DA +H +E+WDGK +N G+S F +KM D+IQRRCKNVISKLQ R +K
Sbjct: 1907 SSRLNSVTRSADDAVEHSRENWDGKQSNTGGNSGFGSKMPDIIQRRCKNVISKLQSRTDK 1966
Query: 1957 EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016
EGHQIVPLLTDLWKR+ S SG NNILDLRKIDQR+DRLEYNGVMELV DVQFMLKG
Sbjct: 1967 EGHQIVPLLTDLWKRMGNSSLPSGVSNNILDLRKIDQRIDRLEYNGVMELVFDVQFMLKG 2026
Query: 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQT 2076
AMQFYGFSHEVR EA+KVHDLFFD+LKIAFPDTDFREAR+ALSF P S++ +T R+
Sbjct: 2027 AMQFYGFSHEVRFEAKKVHDLFFDILKIAFPDTDFREARNALSFQSPGSSAAAT--MRER 2084
Query: 2077 TVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQ-IPQKESRLGSGSGSSREQ 2135
GQ KR K++++M+ PP K RG V E R I QKE+R GSGSG S++Q
Sbjct: 2085 PAGQIKRQKMVHDMDTDSGPPHKSLHRGPVSGEETRATRGHLIAQKETRFGSGSG-SKDQ 2143
Query: 2136 SQPDDSP---HPGELVICKKKRKDREKSVVKPRSVS-GPVSPPSLG-RNIKSPGLGLVPK 2190
Q ++ P HPGELVICKKKRKDREKS+VKPR+ S GPVSPP G R I+SPGL VPK
Sbjct: 2144 YQIEEPPLLTHPGELVICKKKRKDREKSIVKPRTGSGGPVSPPPSGARGIRSPGLSSVPK 2203
Query: 2191 DMRHTQQTTHQHGWANQPAQPANG-GSGAVGWANPVKRLRTDAGKRRPSQL 2240
D + +Q GW NQP Q ANG G G V WANPVKRLRTDAGKRRPS +
Sbjct: 2204 DSKQSQ------GWPNQP-QSANGSGGGPVSWANPVKRLRTDAGKRRPSHI 2247
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520394|ref|XP_003528847.1| PREDICTED: ATP-dependent helicase BRM-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3154 bits (8176), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1620/2222 (72%), Positives = 1848/2222 (83%), Gaps = 49/2222 (2%)
Query: 33 LGFDSLQQQQQHQQQQ--QRQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGS 90
LG DS+QQQQQ QQQQ RQ FQQQ+LRKP+GNEA LAYQ G + G+ G NF+SP +
Sbjct: 38 LGLDSMQQQQQQQQQQIGSRQSFQQQLLRKPEGNEAFLAYQAG-IQGVFGNNNFSSP-SA 95
Query: 91 MQPPQQSRKFFDFAQQHAISQESQNRSQGVEHQLLNPVHQAYMQYALQAQQKSASVLQSQ 150
MQ PQQ RK +Q++ R QG+E Q LNPVHQAY+QYAL AQQ+ +QSQ
Sbjct: 96 MQLPQQPRKL-----HLGSNQDTHQRGQGIEQQTLNPVHQAYLQYALHAQQRPTLGIQSQ 150
Query: 151 QQAKLGMLGPASGKDQDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQ 210
Q K GML AS KDQ+MRMG+LKMQ+++SMQ+ANQ Q SSS+NSSE+ RG+KQMEQ Q
Sbjct: 151 QHTKTGMLSSASLKDQEMRMGHLKMQDIMSMQAANQGQGSSSRNSSERVARGDKQMEQGQ 210
Query: 211 QQVSDQKGEPKPPSQQTLGGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQA---W 267
Q DQK E KP +Q G ++ N+IRPMQA + QQ IQN Q+A +AQLQA W
Sbjct: 211 QIAPDQKSEGKPLTQGPTIGHLISGNMIRPMQAPETQQGIQNVVNTQIAASAQLQAMQAW 270
Query: 268 ALERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAG 327
A ERNIDLS PANA L+AQLIP+MQSR+V+ K NES++GA SSPVPVSKQQVTSP +A
Sbjct: 271 ARERNIDLSHPANAHLMAQLIPLMQSRMVSQSKVNESSIGAQSSPVPVSKQQVTSPAVAS 330
Query: 328 ENSPHANSSSDVSGQSGSAKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVP 387
E+S HANSSSD+SGQSGS+KAR T PS LGS T+A + N + ++ QQF+V GR++Q P
Sbjct: 331 ESSAHANSSSDMSGQSGSSKARQTAPPSHLGSITNAGIAGNSSEMATQQFNVRGRESQAP 390
Query: 388 SRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVK-NSSGPENSQMQYLRQLNRSSPQSAI 446
RQPV +GNG+P +H Q+S N D PL K +SSGPE QMQY+RQLN+S+PQ+
Sbjct: 391 PRQPVVVGNGMPSMHSQQSSANTNFSADHPLNAKTSSSGPEPPQMQYMRQLNQSAPQAGG 450
Query: 447 PSSDGSSANNFSSQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRA 506
P+++G S N+ SQG TQMPQ R FTK QLHVLKAQILAFRRLKKGEGTLPQELLRA
Sbjct: 451 PTNEGGSGNHAKSQGP-PTQMPQHRTSFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRA 509
Query: 507 IVPPSLELQ-QQPAQQQFLPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLP 565
IVPP LE+Q QQP A NQD+ +G I + + +ES+ K+ ++ S N QS
Sbjct: 510 IVPPPLEMQVQQPNH----AAGGQNQDKPAGNIVAELISPIESSAKEPLSIPSINGQSSL 565
Query: 566 KEEAYAGDDKAAVSPVGQGMSA--VTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRT 623
K+E++ D+K+ V V A V+KE AP + GKEEQ++ SVKS+Q+ E +
Sbjct: 566 KQESFVRDEKSIVPAVHVQAVAPPVSKESAPTLSAGKEEQKSIGCSVKSNQDGE-RVNNN 624
Query: 624 QQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRK 683
+++ DRGK+VAPQ D +Q+KKPAQ ++ QPKDVG+ RKYHGPLFDFPFFTRK
Sbjct: 625 TVRNELALDRGKAVAPQAHVSDTMQIKKPAQTSSVPQPKDVGSTRKYHGPLFDFPFFTRK 684
Query: 684 HDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRP 743
HDS GS+ M+N++NNL+LAYDVKDLL EEG+EVL KKR+ENLKKI G+LAVNLERKRIRP
Sbjct: 685 HDSFGSSMMLNNNNNLSLAYDVKDLLFEEGMEVLNKKRTENLKKIEGLLAVNLERKRIRP 744
Query: 744 DLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQ 803
DLVLRL+IE+KKLRL+DLQ+RLRDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ
Sbjct: 745 DLVLRLRIEEKKLRLVDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQ 804
Query: 804 TSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNK 863
SQ+A+REKQLKSI QWRKKLLEAHWAIRDARTARNRGVAKYHE++LREFSK KDDDRNK
Sbjct: 805 ASQRAVREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKHKDDDRNK 864
Query: 864 RMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQ 923
R+EALKNNDV+RYREMLLEQQTSIPGDAAERYAVLS+FLTQTEEYL+KLGSKIT AKNQQ
Sbjct: 865 RLEALKNNDVDRYREMLLEQQTSIPGDAAERYAVLSTFLTQTEEYLHKLGSKITTAKNQQ 924
Query: 924 EVEEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAH 983
EVEEAA AAAAAARLQGLSEEEVR+AAACAGEEVMIRNRFLEMNAPRD SSVNKYY+LAH
Sbjct: 925 EVEEAAKAAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAH 984
Query: 984 AVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043
AVNE V+RQPSMLRAGTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL
Sbjct: 985 AVNETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1044
Query: 1044 MEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNV 1103
MEFKGNYGPHLIIVPNAVLVNWKSE + WLPSVSCI+YVG+KD RS+LFSQEV A+KFNV
Sbjct: 1045 MEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGSKDHRSKLFSQEVCAMKFNV 1104
Query: 1104 LVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163
LVTTYEFIMYDRSKLSK+DWKYIIIDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQN
Sbjct: 1105 LVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQN 1164
Query: 1164 DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223
DLKELWSLLNLLLPEVFDN+KAF+DWFS+PFQKEGPT N +DDWLETEKKVIIIHRLHQI
Sbjct: 1165 DLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEGPTQNVEDDWLETEKKVIIIHRLHQI 1224
Query: 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKN 1283
LEPFMLRRRVEDVEGSLPPKVSIVL+C+MSA+QSAIYDW+K+TGTLR+DPEDEKR++ +N
Sbjct: 1225 LEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQSAIYDWVKSTGTLRLDPEDEKRKLHRN 1284
Query: 1284 PIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT 1343
P YQ K YKTLNNRCMELRKTCNHPLLNYP+FSDLSK+F+VKSCGKLWILDRILIKLQRT
Sbjct: 1285 PAYQMKQYKTLNNRCMELRKTCNHPLLNYPFFSDLSKEFIVKSCGKLWILDRILIKLQRT 1344
Query: 1344 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403
GHRVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFNS DSDCFIFLLS
Sbjct: 1345 GHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLS 1404
Query: 1404 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQ 1463
IRAAGRGLNLQSADTV+IYDPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVVDKI+SHQ
Sbjct: 1405 IRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKIASHQ 1464
Query: 1464 KEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 1523
KEDELRSGGTVD+ED+LAGKDRY+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEE
Sbjct: 1465 KEDELRSGGTVDMEDELAGKDRYMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 1524
Query: 1524 RRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQ 1583
RR+TLETLLHDEERYQETVHDVPSLQEVNRMIARS++E+ELFDQMD+E WIEEMTRYD
Sbjct: 1525 RRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSKEEIELFDQMDDELDWIEEMTRYDH 1584
Query: 1584 VPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEV 1642
VPKWLRA+T+EVNA I LSK+PSKN L G +IG++S E +ERKRG PKGKK+PNYKE+
Sbjct: 1585 VPKWLRANTREVNAAIGALSKRPSKNTLLGGSIGMESSEFGSERKRGRPKGKKHPNYKEL 1644
Query: 1643 DDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGY 1702
DDEI EYSE SSDERN Y EGEIGEF+DD YS A GA +KDQ EDG +C+ GY
Sbjct: 1645 DDEILEYSEVSSDERNEYA---HEGEIGEFDDDGYSVADGAQTIDKDQL-EDGLLCDAGY 1700
Query: 1703 DYLRPSENTRNNHVVEEAGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRM 1761
++ + E+ RNN +VEEAGSSGSSS+S+R+ QIVSP VS QKFGSLSAL+ARP S+SKRM
Sbjct: 1701 EFPQSLESARNNQMVEEAGSSGSSSDSQRVRQIVSPSVSSQKFGSLSALDARPSSISKRM 1760
Query: 1762 PDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVRPRHTVERP 1820
DELEEGEIAVSGDSHMDHQ SGSW HDRDEGEDEQVLQ PKIKRKRS+RVRPRH ERP
Sbjct: 1761 TDELEEGEIAVSGDSHMDHQLSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHATERP 1820
Query: 1821 EERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNL 1880
EE+S ++ H L Q D+KY AQLRTD E K G+SN+ RH+Q+ PS K++R L
Sbjct: 1821 EEKSGSEMASH------LAVQADHKYQAQLRTDPESKLFGDSNASRHEQNSPSLKNKRTL 1874
Query: 1881 PSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQ 1940
PSR++AN K S K+ RLNCM ++D +H +ESW+GK N+SGSS KM+++IQ
Sbjct: 1875 PSRRVANTSKLHGSPKSSRLNCMSVPSQDGGEHSRESWEGKPINSSGSSAHGTKMTEIIQ 1934
Query: 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEY 2000
RRCKNVISKLQRRI+KEGH+IVPLLTDLWKRIE SG V N++LDLRKIDQR+D+ EY
Sbjct: 1935 RRCKNVISKLQRRIDKEGHEIVPLLTDLWKRIENSGSV----NSLLDLRKIDQRIDKFEY 1990
Query: 2001 NGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSF 2060
NG ELV DVQFMLK AM FYGFSHEVR+EARKVHDLFFD+LKIAFPDTDFR+ARSALSF
Sbjct: 1991 NGATELVFDVQFMLKSAMHFYGFSHEVRTEARKVHDLFFDILKIAFPDTDFRDARSALSF 2050
Query: 2061 TGPLSTSVSTPSPRQTTVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQ 2120
+ + S T SPRQ VGQSKRHK+INEME Q+ QRGS SE++RI+V +PQ
Sbjct: 2051 SSQATASTVT-SPRQVAVGQSKRHKLINEMETESYALQRSLQRGSASSSENNRIKVHLPQ 2109
Query: 2121 KESRLGSGSGSSREQSQPDDS---PHPGELVICKKKRKDREKSVVKPRSVSGPVSPPSLG 2177
+ESR GSG GSS + Q DDS HPGELV+CKK+R DREKSVVKP+ +GP SP S+
Sbjct: 2110 RESRTGSGGGSSTREQQQDDSSLLAHPGELVVCKKRRNDREKSVVKPK--TGPASPSSM- 2166
Query: 2178 RNIKSPGLGLVPKDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRRP 2237
++PG V KD R +QQ +H GWA QP+Q NG G V WANPVKRLRTD+GKRRP
Sbjct: 2167 ---RTPGPSSVTKDARLSQQGSHAQGWAGQPSQQPNGSGGPVAWANPVKRLRTDSGKRRP 2223
Query: 2238 SQ 2239
S
Sbjct: 2224 SH 2225
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480215|ref|XP_004155832.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent helicase BRM-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3134 bits (8125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1659/2271 (73%), Positives = 1863/2271 (82%), Gaps = 51/2271 (2%)
Query: 1 MQSGGG-PSRN-------RAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQP 52
MQSGGG P RN A++TS+AASPSSSSSAVSTPHLGFDS+QQQQQ Q RQ
Sbjct: 1 MQSGGGGPLRNPGFPAGRAASTTSAAASPSSSSSAVSTPHLGFDSMQQQQQ--QLASRQS 58
Query: 53 FQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQH-AISQ 111
Q Q+LRK DGNEA+L+YQ G L G++ G NF PGS PQQ+RKF D AQQH SQ
Sbjct: 59 LQHQLLRKSDGNEALLSYQAGGLQGVLVGNNFPQSPGSSHLPQQARKFIDLAQQHHGTSQ 118
Query: 112 ESQNRSQGVEHQLLN-PVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRM 170
E QNRSQG+E Q LN P+HQAY+QYAL AQQKSA +QSQ QAK+G++ P S KDQ+MRM
Sbjct: 119 EGQNRSQGLEQQALNHPMHQAYLQYALAAQQKSAMAMQSQHQAKMGIMSPQSIKDQEMRM 178
Query: 171 GNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTLGG 230
GN K+QELI Q +NQA S SK SS+ F RGEKQMEQ SDQ+ + K SQ G
Sbjct: 179 GNQKIQELIPTQVSNQASTSLSKKSSDHFVRGEKQMEQGPPSTSDQRVDSKSSSQLPSMG 238
Query: 231 QGMAANIIRPMQAAQHQQSIQNAAGNQLAMAA--QLQAWALERNIDLSQPANASLIAQLI 288
+ N+ RPMQA Q Q I N A NQL MA +QAWALERNIDLS P+N ++++QL
Sbjct: 239 NMVPVNMTRPMQAPQGQPGILNMANNQLGMAQLQAVQAWALERNIDLSLPSNVNIVSQLF 298
Query: 289 PIMQSRIVANH-KANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGSAK 347
P++Q R++ H K NE+NMG SSP V KQQ+ S E S HANS SDVSGQS S K
Sbjct: 299 PMLQPRMLVPHQKPNENNMGQQSSPASVPKQQINSLFAGKEASAHANSLSDVSGQSSSTK 358
Query: 348 ARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQTS 407
AR S +P G +A+VVNN ++ S+QQFSV G +NQ+ SR PV+ GN +PP+H ++S
Sbjct: 359 ARQIASTNPFGQNMNASVVNNTSHASMQQFSVPGMENQLSSRLPVS-GNTIPPVHSSESS 417
Query: 408 LNMTPGVDQPLPVKNSSG-PENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLATQ 466
N+ +++ L K S G PEN Q QY+RQ+NRSSPQ+A+P+SDG S+N+ QGG + Q
Sbjct: 418 GNVNQNIERSLQGKTSLGTPENVQTQYVRQVNRSSPQTALPTSDGGSSNSTLPQGGHSNQ 477
Query: 467 MPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPA 526
QQR GFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI PP L++QQQ QQQFLP
Sbjct: 478 TAQQRFGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLDVQQQQQQQQFLPP 537
Query: 527 AVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG-QGM 585
QD+ SGK ED ++E+ KD+ +++SSN P+EE GD+K+ S Q M
Sbjct: 538 GSTIQDKSSGKTVED-TGNVEATEKDSLSLASSNGHRFPREEVSTGDEKSKTSTSDVQPM 596
Query: 586 SAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVAPQVSACD 645
KE V GKEEQQ VS VKSDQE + G + ++DFP +RGK++A Q + D
Sbjct: 597 PPAMKETVTVASSGKEEQQTTVS-VKSDQETDRGCQKPPGKTDFPVERGKAIANQAAVPD 655
Query: 646 AVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTLAYDV 705
QVKKPA +T Q KDVGAARKYHGPLFDFP+FTRKHDS GS VN++NNLTLAYDV
Sbjct: 656 VTQVKKPAPPSTP-QSKDVGAARKYHGPLFDFPYFTRKHDSFGSAMAVNNNNNLTLAYDV 714
Query: 706 KDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRL 765
KDLL EEGLEV+ KKR+ENLKKI G+LAVNLERKRIRPDLV+RLQIE+KKLRLLDLQ+RL
Sbjct: 715 KDLLFEEGLEVINKKRTENLKKIGGLLAVNLERKRIRPDLVVRLQIEEKKLRLLDLQARL 774
Query: 766 RDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLL 825
RDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQKAMREKQLKS+ QWRKKLL
Sbjct: 775 RDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELTRQVQASQKAMREKQLKSVFQWRKKLL 834
Query: 826 EAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQT 885
EAHWAIRDARTARNRGVAKYHER+LREFSKRKDDDRN+RMEALKNNDVERYREMLLEQQT
Sbjct: 835 EAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNRRMEALKNNDVERYREMLLEQQT 894
Query: 886 SIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGLSEEE 945
S+PGDAAERY+VLSSFLTQTEEYL+KLGSKITAAK+QQEV EAAN AAAAARLQGLSEEE
Sbjct: 895 SMPGDAAERYSVLSSFLTQTEEYLHKLGSKITAAKSQQEVAEAANIAAAAARLQGLSEEE 954
Query: 946 VRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQ 1005
VR+AAACAGEEVMIRNRF+EMNAP+D S VNKYY+LAHAVNER++RQPSMLRAGTLRDYQ
Sbjct: 955 VRAAAACAGEEVMIRNRFMEMNAPKDSSYVNKYYNLAHAVNERIVRQPSMLRAGTLRDYQ 1014
Query: 1006 IVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065
+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW
Sbjct: 1015 LVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1074
Query: 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKY 1125
KSELH WLPSVSCIYYVG KD+RS+LFSQEV ALKFNVLVTTYEFIMYDRSKLSK+DWKY
Sbjct: 1075 KSELHTWLPSVSCIYYVGGKDERSKLFSQEVCALKFNVLVTTYEFIMYDRSKLSKIDWKY 1134
Query: 1126 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1185
IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA
Sbjct: 1135 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA 1194
Query: 1186 FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1245
FHDWFS+PFQKEGPT NA+DDWLETEKK IIIHRLHQILEPFMLRRRVEDVEGSLPPKVS
Sbjct: 1195 FHDWFSKPFQKEGPTPNAEDDWLETEKKXIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS 1254
Query: 1246 IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305
IVLRCRMSA QSA+YDWIKATGTLRVDPEDEK RVQKNP YQ KVYKTLNNRCMELRKTC
Sbjct: 1255 IVLRCRMSAFQSAVYDWIKATGTLRVDPEDEKLRVQKNPNYQPKVYKTLNNRCMELRKTC 1314
Query: 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1365
NHPLLNYPY+ D SKDFLV+SCGKLWILDRILIKLQ+TGHRVLLFSTMTKLLDILEEYLQ
Sbjct: 1315 NHPLLNYPYYGDFSKDFLVRSCGKLWILDRILIKLQKTGHRVLLFSTMTKLLDILEEYLQ 1374
Query: 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1425
WR+L+YRRIDGTTSLEDRESAIVDFNS DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD
Sbjct: 1375 WRRLIYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD 1434
Query: 1426 PNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDR 1485
PNPKNEEQAVARAHRIGQ REVKVIYMEAVVDK SS+QKEDELRSGG+ DLEDD AGKDR
Sbjct: 1435 PNPKNEEQAVARAHRIGQTREVKVIYMEAVVDKFSSNQKEDELRSGGSGDLEDDFAGKDR 1494
Query: 1486 YIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDV 1545
Y+GSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQETVHDV
Sbjct: 1495 YMGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDV 1554
Query: 1546 PSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK 1605
PSLQEVNRMIARSEDEVELFDQMDEEF W EEMTR DQ+PKWLRAST+EVN IANLSKK
Sbjct: 1555 PSLQEVNRMIARSEDEVELFDQMDEEFDWTEEMTRCDQIPKWLRASTREVNNAIANLSKK 1614
Query: 1606 PSKNILFGSNIGVDSGE------IETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERN 1658
PSKNILFG+ G++S E + TERKRG PKGKK PNYKE+DD+ GE+SEASSDER
Sbjct: 1615 PSKNILFGAGYGLESSELGSDSSLRTERKRGRPKGKKIPNYKEMDDDNGEFSEASSDERK 1674
Query: 1659 GYPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVE 1718
Y VQEEEGEI EFEDDEYS + A NKDQ EDGP C+ YDY P + RNNH++E
Sbjct: 1675 XYSVQEEEGEIAEFEDDEYSRGIEATQLNKDQM-EDGPDCDARYDY--PRDGARNNHLLE 1731
Query: 1719 EAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHM 1778
EAGSSGSSS+SRRLTQ+VSPVS QKFG LSAL+ARP SLSKR+PDELEEGEIA+SGDSHM
Sbjct: 1732 EAGSSGSSSSSRRLTQMVSPVSSQKFGFLSALDARPSSLSKRLPDELEEGEIAISGDSHM 1791
Query: 1779 DHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDT-PLHRGDSSL 1837
++QQS SW HDR++GE+EQVLQPKIKRKRS+R+RPR ER EE+ +T L GDSS
Sbjct: 1792 ENQQSESWIHDREDGEEEQVLQPKIKRKRSLRLRPRPPAERREEKIYNETQSLQYGDSSS 1851
Query: 1838 -LPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLK 1896
PF D+K+ ++ + D E K +G+SNSL+H+Q+E SSK+RRNL +R++A + K +S K
Sbjct: 1852 PSPFLADHKF-SKFKNDPEAKPYGDSNSLKHEQNESSSKNRRNLSARRVAPSSKLHSSPK 1910
Query: 1897 TGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEK 1956
+ RLN + +DA +H +E+WDGK +N G+S F +KM D+IQRRCKNVISKLQ R +K
Sbjct: 1911 SSRLNSVTRSADDAVEHSRENWDGKQSNTGGNSGFGSKMPDIIQRRCKNVISKLQSRTDK 1970
Query: 1957 EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016
EGHQIVPLLTDLWKR+ S SG NNILDLRKIDQR+DRLEYNGVMELV DVQFMLKG
Sbjct: 1971 EGHQIVPLLTDLWKRMGNSSLPSGVSNNILDLRKIDQRIDRLEYNGVMELVFDVQFMLKG 2030
Query: 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSPRQT 2076
AMQFYGFSHEVR EA+KVHDLFFD+LKIAFPDTDFREAR+ALSF P S++ +T R+
Sbjct: 2031 AMQFYGFSHEVRFEAKKVHDLFFDILKIAFPDTDFREARNALSFQSPGSSAAAT--MRER 2088
Query: 2077 TVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQ-IPQKESRLGSGSGSSREQ 2135
GQ KR K++++M+ PP K RG V E R I QKE+R GSGSG S++Q
Sbjct: 2089 PAGQIKRQKMVHDMDTDSGPPHKSLHRGPVSGEETRATRGHLIAQKETRFGSGSG-SKDQ 2147
Query: 2136 SQPDDSP---HPGELVICKKKRKDREKSVVKPRSVS-GPVSPPSLG-RNIKSPGLGLVPK 2190
Q ++ P HPGELVICKKK KDREKS+VKPR+ S GPVSPP G R I+SP L VPK
Sbjct: 2148 YQIEEPPLLTHPGELVICKKKXKDREKSIVKPRTGSGGPVSPPPSGARGIRSPVLSSVPK 2207
Query: 2191 DMRHTQQTTHQHGWANQPAQPANG-GSGAVGWANPVKRLRTDAGKRRPSQL 2240
D + +Q GW NQP Q ANG G G V WANPVKRLRTDAGKRRPS +
Sbjct: 2208 DSKQSQ------GWPNQP-QSANGSGGGPVSWANPVKRLRTDAGKRRPSHI 2251
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568407|ref|XP_003552402.1| PREDICTED: ATP-dependent helicase BRM-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3086 bits (8001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1582/2209 (71%), Positives = 1821/2209 (82%), Gaps = 62/2209 (2%)
Query: 50 RQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAI 109
RQ FQQQ+LRKP+G+EA LAYQ G L G+ G NF P SMQ PQQSRKF D AQ +
Sbjct: 58 RQSFQQQLLRKPEGSEAFLAYQAG-LQGVFGSNNF--PSSSMQLPQQSRKFVDLAQHGS- 113
Query: 110 SQESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQQAKLGMLGPASGKDQDM 168
N+ QGVE Q+LNPV AY QYALQA QQKSA +QSQQQ K+GMLGP+S KDQ+M
Sbjct: 114 -----NQVQGVEQQMLNPVQAAYFQYALQASQQKSALAMQSQQQPKVGMLGPSSVKDQEM 168
Query: 169 RMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTL 228
RMGNLKMQ+L+SMQ+ NQ QASSS+NSSE F GEK++EQ QQ DQK E SQ
Sbjct: 169 RMGNLKMQDLMSMQAVNQVQASSSRNSSEHFTWGEKRVEQGQQLAPDQKSEGNSSSQGPA 228
Query: 229 GGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQL---QAWALERNIDLSQPANASLIA 285
G M NIIRP+QA QQSI N NQ+AMAAQL QAWA ERNIDLS PANA+L+A
Sbjct: 229 VGNLMPGNIIRPVQALATQQSIPNTMNNQIAMAAQLRAMQAWAHERNIDLSHPANANLMA 288
Query: 286 QLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGS 345
QLIP+MQSRIV KAN++N+GA SSPVPVS QQVTSP +A E+S HANSSSDVS QSGS
Sbjct: 289 QLIPLMQSRIVQQPKANDTNLGAMSSPVPVSNQQVTSPAVASESSAHANSSSDVSAQSGS 348
Query: 346 AKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQ 405
AKAR T PS L SA + ++ ++++ QQFS+HGRD Q +Q V NG+P +HP Q
Sbjct: 349 AKARQTAPPSHLSPPISAGIASSSSDMAAQQFSLHGRDAQGSLKQSVLTINGMPSVHPQQ 408
Query: 406 TSLNMTPGVDQPLPVK-NSSGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLA 464
+S NM G D PL VK +SSG E ++MQY+RQL++S+ Q+ +++G S N+ +QGG
Sbjct: 409 SSANMNLGADHPLNVKTSSSGSEPAKMQYIRQLSQSTSQAGGLTNEGGSGNHPKTQGG-P 467
Query: 465 TQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQ-QQPAQQQF 523
+QMPQQR GFTK QLHVLKAQILAFRRLKK EG LPQELLRAI+PP L+LQ QQP +
Sbjct: 468 SQMPQQRNGFTKQQLHVLKAQILAFRRLKKAEGALPQELLRAIIPPPLDLQVQQPIHSE- 526
Query: 524 LPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG- 582
NQ++ +G I + R E N KD+Q +SS N ++ K+E + D+ + V+ V
Sbjct: 527 ---GAQNQEKSAGNIVAEHPRQNEVNAKDSQPISSINGKNSSKQEVFVRDENSTVTAVQV 583
Query: 583 QGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVA-PQV 641
QG VTKE A GKEEQQ+ S KSDQE E G+ RT +++ D+GK+VA PQ
Sbjct: 584 QGTPRVTKESA-----GKEEQQSVACSAKSDQESEHGIGRTPVRNELVLDKGKAVAAPQA 638
Query: 642 SACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTL 701
S DA+Q+ KPAQA+ Q KDVG+ RKYHGPLFDFPFFTRKHDS GS+ M+N+ NNL+L
Sbjct: 639 SVNDAMQLNKPAQASAVSQTKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMINN-NNLSL 697
Query: 702 AYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDL 761
AYDVK+LL EEG+EVL K+R+E+LKKI G+LAVNLERKRIRPDLVLRLQIE+KKLRLLDL
Sbjct: 698 AYDVKELLFEEGIEVLGKRRTESLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDL 757
Query: 762 QSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWR 821
Q+RLRDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQ+A+REKQLKSI QWR
Sbjct: 758 QARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRALREKQLKSIFQWR 817
Query: 822 KKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLL 881
KKLLE HWAIRDARTARNRGVAKYHER+LREFSKRKDDDRNKRMEALKNNDV+RYREMLL
Sbjct: 818 KKLLETHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLL 877
Query: 882 EQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGL 941
EQQTSI GDAAERYAVLS+FLTQTEEYL+KLGSKITAAKNQQEVEEAA AAAAAARLQGL
Sbjct: 878 EQQTSIQGDAAERYAVLSTFLTQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGL 937
Query: 942 SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTL 1001
SEEEVR+AAACAGEEVMIRNRF+EMNAP+D SSV+KYYSLAHAV+E+V+ QPSMLRAGTL
Sbjct: 938 SEEEVRAAAACAGEEVMIRNRFMEMNAPKDNSSVSKYYSLAHAVSEKVVCQPSMLRAGTL 997
Query: 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061
RDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV
Sbjct: 998 RDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1057
Query: 1062 LVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 1121
+VNWKSEL+ WLPSVSCI+Y G KD RS+L+SQE+ A+KFNVLVTTYEFIMYDR++LSK+
Sbjct: 1058 MVNWKSELYTWLPSVSCIFYAGGKDYRSKLYSQEIMAMKFNVLVTTYEFIMYDRARLSKI 1117
Query: 1122 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1181
DWKYIIIDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD
Sbjct: 1118 DWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1177
Query: 1182 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 1241
N+KAF+DWFS+PFQKEGPT N +DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP
Sbjct: 1178 NKKAFNDWFSKPFQKEGPTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 1237
Query: 1242 PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301
PKVSIVLRC+MSA+QSAIYDW+K+TGTLR+DPE E ++QKNP YQAK YKTLNNRCMEL
Sbjct: 1238 PKVSIVLRCKMSAVQSAIYDWVKSTGTLRLDPEGENSKIQKNPHYQAKEYKTLNNRCMEL 1297
Query: 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE 1361
RKTCNHP LNYP +LS + +VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD+LE
Sbjct: 1298 RKTCNHPSLNYPLLGELSTNSIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDLLE 1357
Query: 1362 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421
+YL WR+LVYRRIDGTT+L+DRESAI+DFNS DSDCFIFLLSIRAAGRGLNLQSADTV+I
Sbjct: 1358 DYLNWRRLVYRRIDGTTNLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVI 1417
Query: 1422 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1481
YDPDPNPKNEEQAVARAHRIGQKREV+VIYMEAVVDKISSHQKEDELRSGGTVD+ED+L
Sbjct: 1418 YDPDPNPKNEEQAVARAHRIGQKREVRVIYMEAVVDKISSHQKEDELRSGGTVDMEDELV 1477
Query: 1482 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQET 1541
GKDRYIGSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQE
Sbjct: 1478 GKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQEN 1537
Query: 1542 VHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIAN 1601
VHDVPSLQEVNRMIARSE+EVELFDQMDEE W E++ ++D+VP+WLRA+T+EVNA IA
Sbjct: 1538 VHDVPSLQEVNRMIARSEEEVELFDQMDEELDWPEDVMQHDEVPEWLRANTREVNAAIAA 1597
Query: 1602 LSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGY 1660
LSK+PSKN L G +IG++S E+ +ER+RG PKGKK+PNYKE++DE GEYSEA+S++RN
Sbjct: 1598 LSKRPSKNTLLGGSIGMESSEVGSERRRGRPKGKKHPNYKELEDENGEYSEANSEDRNED 1657
Query: 1661 PVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEA 1720
Q EGE GEFEDD YSGA G L EEDG + GY+ SEN RNNHVVEEA
Sbjct: 1658 SAQ--EGENGEFEDDGYSGADGNRL------EEDGLTSDAGYEIALSSENARNNHVVEEA 1709
Query: 1721 GSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMD 1779
GSSGSSS+S+RLT+ VSP VS +KFGSLSAL+ARPGS+SK M DELEEGEI VSGDSHMD
Sbjct: 1710 GSSGSSSDSQRLTKTVSPSVSSKKFGSLSALDARPGSISKIMGDELEEGEIVVSGDSHMD 1769
Query: 1780 HQQSGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVRPRHTVERPEERSCTD-TPLHRGDSSL 1837
HQQSGSW HDRDEGEDEQVLQ PKIKRKRS+RVRPRH +ERPE++S ++ L RG+SS+
Sbjct: 1770 HQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRHAMERPEDKSGSEMISLQRGESSV 1829
Query: 1838 LPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKT 1897
L D KY Q R D E K+ G+SN+ +HD++E S K+++ LPSRKIAN+ K S K+
Sbjct: 1830 LA---DYKYQIQKRIDPESKSFGDSNASKHDKNEASLKNKQKLPSRKIANSSKLHGSPKS 1886
Query: 1898 GRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKE 1957
RLNC +ED +H ESW+GK N +GSS K +++IQR CKNVISKLQRRI+KE
Sbjct: 1887 NRLNCTSAPSEDGNEHPTESWEGKHLNPNGSSAHGTKTTEIIQRGCKNVISKLQRRIDKE 1946
Query: 1958 GHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017
GHQIVPLLTDLWKR+E SG+ G+GNN+LDLRKIDQR+DR++Y+GVMELV DVQFML+GA
Sbjct: 1947 GHQIVPLLTDLWKRMENSGHAGGSGNNLLDLRKIDQRIDRMDYSGVMELVFDVQFMLRGA 2006
Query: 2018 MQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFT--GPLSTSVSTPSPRQ 2075
M FYG+S+EVR+E RKVHDLFFD+LKIAFPDTDF EAR ALSF+ P T+ SPRQ
Sbjct: 2007 MHFYGYSYEVRTEGRKVHDLFFDILKIAFPDTDFGEARGALSFSSQAPAGTAA---SPRQ 2063
Query: 2076 TTVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQKESRLGSGSGSSREQ 2135
TVG SKRH++ N+ E P P QK Q GS E++R + +PQK SR +GS S+REQ
Sbjct: 2064 GTVGPSKRHRMTNDAETDPCPSQKLSQSGSTSNGENARFKGHLPQKNSR--TGSSSAREQ 2121
Query: 2136 SQPDDSP---HPGELVICKKKRKDREKSVVKPRSVS-GPVSPPSLGRNIKSPGLGLVPKD 2191
Q D+ P HPG+LV+CKKKR DR+KS+ K R+ S GP+SPPS I+SPG G PKD
Sbjct: 2122 PQQDNPPLLAHPGQLVVCKKKRNDRDKSLGKGRTGSTGPISPPSA---IRSPGSGSTPKD 2178
Query: 2192 MRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRRPSQL 2240
R QQ G +QP+Q +NG G+VGWANPVKRLRTD+GKRRPS +
Sbjct: 2179 ARLAQQ-----GRGSQPSQHSNGSGGSVGWANPVKRLRTDSGKRRPSHM 2222
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531981|ref|XP_003534554.1| PREDICTED: ATP-dependent helicase BRM-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3042 bits (7887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1571/2211 (71%), Positives = 1815/2211 (82%), Gaps = 66/2211 (2%)
Query: 50 RQPFQQQILRKPDGNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAI 109
RQ FQQQ+LRKP+G+EA LAYQ G L G+ G NF P SMQ PQQSRKF D AQ +
Sbjct: 58 RQSFQQQLLRKPEGSEAFLAYQAG-LQGVFGSNNF--PSSSMQLPQQSRKFVDLAQHGS- 113
Query: 110 SQESQNRSQGVEHQLLNPVHQAYMQYALQA-QQKSASVLQSQQQAKLGMLGPASGKDQDM 168
N+ QGVE Q+LNP AY QYALQA QQKSA +QSQQQ K+GMLGP+S KDQ+M
Sbjct: 114 -----NQIQGVEQQMLNPAQAAYFQYALQASQQKSALEMQSQQQPKMGMLGPSSVKDQEM 168
Query: 169 RMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQQTL 228
RMGNLKMQ+L+SM + NQAQASSS+NSSE F RGEK++EQ QQ DQK E SQ +
Sbjct: 169 RMGNLKMQDLMSMPAVNQAQASSSRNSSEHFTRGEKRVEQGQQLAPDQKSEGNSSSQGAV 228
Query: 229 GGQGMAANIIRPMQAAQHQQSIQNAAGNQLAMAAQL---QAWALERNIDLSQPANASLIA 285
G M+ NIIRP+Q QQSI N+ NQ+AMAAQL QAWA ERNIDLS PANA+L+A
Sbjct: 229 GNL-MSGNIIRPVQDLATQQSIPNSMNNQIAMAAQLRAMQAWAHERNIDLSHPANANLMA 287
Query: 286 QLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPTIAGENSPHANSSSDVSGQSGS 345
QLIP+MQSR+V KAN++N+G+ SSP+PVS QQVTSP +A E+S HA+SSSDVS QSGS
Sbjct: 288 QLIPLMQSRMVQQPKANDTNLGSLSSPIPVSNQQVTSPAVASESSAHAHSSSDVSAQSGS 347
Query: 346 AKARPTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDNQVPSRQPVAIGNGLPPIHPPQ 405
AKAR T PS L SA + ++ ++++ QFS+HGRD Q +Q V NG+P +HP Q
Sbjct: 348 AKARQTAPPSHLSPPISAGIASSSSDMAALQFSLHGRDAQGSLKQSVLTVNGMPSVHPQQ 407
Query: 406 TSLNMTPGVDQPLPVKNSS-GPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGGLA 464
+S NM G D PL K+SS G E +MQY+RQLN+S+ Q+ +++G S N+ +QGG
Sbjct: 408 SSANMNLGADHPLNAKSSSSGSEPVKMQYIRQLNQSASQAGGLTNEGGSGNHTKTQGG-P 466
Query: 465 TQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQ-QQPAQQQF 523
+QMPQQR GFTK QLHVLKAQILAFRRLKK EG LPQELLRAI+PP L+LQ QQP +
Sbjct: 467 SQMPQQRNGFTKQQLHVLKAQILAFRRLKKAEGALPQELLRAIIPPPLDLQVQQPIHSE- 525
Query: 524 LPAAVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSPVG- 582
NQ++ +G I +Q R E N K++Q +SS N + K+E + D+ + V+ V
Sbjct: 526 ---GAQNQEKSAGNIVAEQPRQNEVNAKESQPISSINGKISSKQEVFVRDENSPVTAVHL 582
Query: 583 QGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLRTQQQSDFPADRGKSVA-PQV 641
Q VTKE A G+EEQQ+ + KSDQE E G+ R ++ D+GK+VA PQ
Sbjct: 583 QPTPPVTKESA-----GQEEQQSVACAPKSDQESEHGIGR----NELVLDKGKAVAAPQA 633
Query: 642 SACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSSNNLTL 701
S DA+Q+ KPAQA+T QPKDVG+ RKYHGPLFDFPFFTRKHDS GS+ M+N+ NNL+L
Sbjct: 634 SVTDAMQLNKPAQASTVSQPKDVGSTRKYHGPLFDFPFFTRKHDSFGSSMMINN-NNLSL 692
Query: 702 AYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDL 761
AYDVK+LL EEG+EVL K+R+E+LKKI G+LAVNLERKRIRPDLVLRLQIE+KKLRLLDL
Sbjct: 693 AYDVKELLFEEGMEVLGKRRTESLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLLDL 752
Query: 762 QSRLRDEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWR 821
Q+RLRDE+DQQQQEIMAMPDR YRKFVRLCERQR+EL RQVQ SQ+A+REKQLKSI QWR
Sbjct: 753 QARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRALREKQLKSIFQWR 812
Query: 822 KKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLL 881
KKLLE HWAIRDARTARNRGVAKYHER+LREFSKRKDDDRNKRMEALKNNDV+RYREMLL
Sbjct: 813 KKLLETHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVDRYREMLL 872
Query: 882 EQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEAANAAAAAARLQGL 941
EQQTSI GDAAERYAVLS+FL+QTEEYL+KLGSKITAAKNQQEVEEAA AAAAAARLQGL
Sbjct: 873 EQQTSIEGDAAERYAVLSTFLSQTEEYLHKLGSKITAAKNQQEVEEAAKAAAAAARLQGL 932
Query: 942 SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTL 1001
SEEEVR AAACAGEEVMIRNRF+EMNAP+D SSV+KYYSLAHAV+E+V+ QPSMLRAGTL
Sbjct: 933 SEEEVRVAAACAGEEVMIRNRFMEMNAPKDSSSVSKYYSLAHAVSEKVVCQPSMLRAGTL 992
Query: 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061
RDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV
Sbjct: 993 RDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1052
Query: 1062 LVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 1121
+VNWKSELH WLPSVSCI+Y G KD RS+L+SQE+ A+KFNVLVTTYEFIMYDR++LSK+
Sbjct: 1053 MVNWKSELHTWLPSVSCIFYAGGKDYRSKLYSQEIMAMKFNVLVTTYEFIMYDRARLSKI 1112
Query: 1122 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1181
DWKYIIIDEAQRMKDR+SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD
Sbjct: 1113 DWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1172
Query: 1182 NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 1241
N+KAF+DWFS+PFQKEGPT N +DDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP
Sbjct: 1173 NKKAFNDWFSKPFQKEGPTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP 1232
Query: 1242 PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301
PKVSIVLRC+MSA+QSAIYDW+K+TGTLR+DPE E ++QKNP YQAK YKTLNNRCMEL
Sbjct: 1233 PKVSIVLRCKMSAVQSAIYDWVKSTGTLRLDPEGENSKIQKNPHYQAKEYKTLNNRCMEL 1292
Query: 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE 1361
RKTCNHP LNYP S+LS + +VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD+LE
Sbjct: 1293 RKTCNHPSLNYPLLSELSTNSIVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDLLE 1352
Query: 1362 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421
+YL WR+LVYRRIDGTTSL+DRESAI+DFNS DSDCFIFLLSIRAAGRGLNLQSADTV+I
Sbjct: 1353 DYLNWRRLVYRRIDGTTSLDDRESAIMDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVI 1412
Query: 1422 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1481
YDPDPNPKNEEQAVARAHRIGQKREV+VIYMEAVVDKISSHQKEDE+RSGGTVD+ED+L
Sbjct: 1413 YDPDPNPKNEEQAVARAHRIGQKREVRVIYMEAVVDKISSHQKEDEVRSGGTVDMEDELV 1472
Query: 1482 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQET 1541
GKDRYIGSIE LIRNNIQQYKIDMADEVINAGRFDQRTTHEERR+TLETLLHDEERYQE
Sbjct: 1473 GKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQEN 1532
Query: 1542 VHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIAN 1601
VHDVPSLQEVNRMIARSE+EVELFDQMDEE W E++ ++D+VP+WLRA+T+EVNA IA
Sbjct: 1533 VHDVPSLQEVNRMIARSEEEVELFDQMDEELDWPEDVMQHDEVPEWLRANTREVNAAIAA 1592
Query: 1602 LSKKPSKNILFGSNIGVDSGE-IETERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNG 1659
LSK+P KN L G ++ ++S E + +ER+RG PKGKK+PNYKE++DE GEYSEASS++RN
Sbjct: 1593 LSKRPLKNTLLGGSVAIESSEVVGSERRRGRPKGKKHPNYKELEDENGEYSEASSEDRNE 1652
Query: 1660 YPVQEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEE 1719
Q GEIGEFEDD SGA G L EEDG + GY+ R SEN RNNHVVEE
Sbjct: 1653 DSAQ---GEIGEFEDDVCSGADGNRL------EEDGLTSDAGYEIARSSENARNNHVVEE 1703
Query: 1720 AGSSGSSSNSRRLTQIVSP-VSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHM 1778
AGSSGSSS+S+RLT+ VSP VS +KFGSLSAL++RPGS+SK M DELEEGEIAVSGDSHM
Sbjct: 1704 AGSSGSSSDSQRLTKTVSPSVSSKKFGSLSALDSRPGSISKIMGDELEEGEIAVSGDSHM 1763
Query: 1779 DHQQSGSWTHDRDEGEDEQVL-QPKIKRKRSIRVRPRHTVERPEERSCTD-TPLHRGDSS 1836
DHQQSGSW HDRDEGEDEQVL QPKIKRKRS+RVRPRH +ER E++S + L RG+SS
Sbjct: 1764 DHQQSGSWIHDRDEGEDEQVLQQPKIKRKRSLRVRPRHAMERLEDKSGNEIISLQRGESS 1823
Query: 1837 LLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN---LPSRKIANAPKSRA 1893
LL D KY Q R D E K+ G+SN+ + D++E S S +N L SRK+AN K
Sbjct: 1824 LLA---DYKYQIQTRIDPESKSFGDSNASKRDKNESSLTSLKNKQKLSSRKVANTSKLHG 1880
Query: 1894 SLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRR 1953
S K+ RLNC +ED +H +ESW+GK N +GSS K +++IQR CKNVISKLQRR
Sbjct: 1881 SPKSNRLNCTSAPSEDGNEHPRESWEGKHLNPNGSSAHGTKTTEIIQRGCKNVISKLQRR 1940
Query: 1954 IEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013
I+KEGHQIVPLLTDLWKRIE SG+ G+GN++LDL KIDQR+DR++Y+GVMELV DVQFM
Sbjct: 1941 IDKEGHQIVPLLTDLWKRIENSGHAGGSGNSLLDLHKIDQRIDRMDYSGVMELVFDVQFM 2000
Query: 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFTGPLSTSVSTPSP 2073
L+GAM FYG+S+EVR+EARKVHDLFFD+LKIAFPDTDF EAR ALSF+ + + SP
Sbjct: 2001 LRGAMHFYGYSYEVRTEARKVHDLFFDILKIAFPDTDFVEARGALSFSSQVPAGTAASSP 2060
Query: 2074 RQTTVGQSKRHKIINEMEPGPSPPQKPPQRGSVPVSEDSRIRVQIPQKESRLGSGSGSSR 2133
RQ TVG SKRH++ N+ E P P QKP Q GS E++R + +PQK SR +GSGS+R
Sbjct: 2061 RQVTVGPSKRHRVTNDAETDPCPSQKPSQSGSTTNGENTRFKGHLPQKNSR--TGSGSAR 2118
Query: 2134 EQSQPDDSP---HPGELVICKKKRKDREKSVVKPRSVS-GPVSPPSLGRNIKSPGLGLVP 2189
EQ Q D+ P HPG+LV+CKKKR +R+KS+ K R+ S GPVSPPS I+SPG G P
Sbjct: 2119 EQPQQDNPPLLAHPGQLVVCKKKRNERDKSLGKGRTGSTGPVSPPSAA--IRSPGSGSTP 2176
Query: 2190 KDMRHTQQTTHQHGWANQPAQPANGGSGAVGWANPVKRLRTDAGKRRPSQL 2240
KD R QQ G +QP+Q +NG +G+VGWANPVKRLRTD+GKRRPS +
Sbjct: 2177 KDARLAQQ-----GRVSQPSQHSNGSAGSVGWANPVKRLRTDSGKRRPSHM 2222
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2240 | ||||||
| TAIR|locus:2062999 | 2193 | BRM "AT2G46020" [Arabidopsis t | 0.738 | 0.754 | 0.654 | 0.0 | |
| ASPGD|ASPL0000042729 | 1407 | AN2278 [Emericella nidulans (t | 0.305 | 0.486 | 0.355 | 3e-129 | |
| POMBASE|SPAC1250.01 | 1199 | snf21 "ATP-dependent DNA helic | 0.212 | 0.396 | 0.456 | 2.1e-128 | |
| UNIPROTKB|D4AA07 | 1262 | Smarca4 "Transcription activat | 0.294 | 0.522 | 0.390 | 1.3e-120 | |
| DICTYBASE|DDB_G0271052 | 3247 | snf2b "SNF2-related protein Sn | 0.207 | 0.143 | 0.461 | 5.8e-118 | |
| TAIR|locus:2150270 | 1064 | CHR23 "chromatin remodeling 23 | 0.216 | 0.456 | 0.347 | 5.9e-118 | |
| UNIPROTKB|P51532 | 1647 | SMARCA4 "Transcription activat | 0.294 | 0.400 | 0.393 | 4e-117 | |
| CGD|CAL0003962 | 1303 | orf19.239 [Candida albicans (t | 0.298 | 0.513 | 0.363 | 3.4e-116 | |
| SGD|S000001388 | 1359 | STH1 "ATPase component of the | 0.263 | 0.434 | 0.396 | 3.9e-116 | |
| POMBASE|SPCC1620.14c | 1680 | snf22 "ATP-dependent DNA helic | 0.208 | 0.277 | 0.452 | 4.2e-116 |
| TAIR|locus:2062999 BRM "AT2G46020" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5351 (1888.7 bits), Expect = 0., Sum P(3) = 0.
Identities = 1107/1692 (65%), Positives = 1254/1692 (74%)
Query: 207 EQPQQQVSDQKGEPKPPSQQTLG-GQGMAANIIRPMQAAQHQQSIXXXXXXXXXXXXXXX 265
E+ + S Q+ E K QQ +G GQ M N+IRPMQA Q QQ +
Sbjct: 200 ERQTESSSQQRNETKSHPQQQVGTGQLMPGNMIRPMQAPQAQQLVNNMGNNQLAFAQQWQ 259
Query: 266 XXXX-ERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAPSSPVPVSKQQVTSPT 324
R ++ A+ +Q+ I+Q+R+ A KA E N+ + S +P+S Q +S
Sbjct: 260 AMQAWARERNIDLSHPANA-SQMAHILQARMAAQQKAGEGNVASQSPSIPISSQPASSSV 318
Query: 325 IAGENSPHANXXXXXXXXXXXAKARPTVSPSPLGSTTSAAXXXXXXXISLQQFSVHGRDN 384
+ GENSPHAN AKAR +S ST+S ++ FS GR+N
Sbjct: 319 VPGENSPHANSASDISGQSGSAKARHALSTGSFASTSSPRMVNP----AMNPFSGQGREN 374
Query: 385 QVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPVKNSSGP-ENSQMQYLRQLNRSSPQ 443
+ R V NG+P +P QTS N TP +DQ K S GP E+ QMQ RQLN +P
Sbjct: 375 PMYPRHLVQPTNGMPSGNPLQTSANETPVLDQNASTKKSLGPAEHLQMQQPRQLNTPTPN 434
Query: 444 SAIPXXXXXXXXXXXXQGGLATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQEL 503
P Q G TQ QQR GFTK QLHVLKAQILAFRRLKKGEG+LP EL
Sbjct: 435 LVAPSDTGPLSNSSL-QSGQGTQQAQQRSGFTKQQLHVLKAQILAFRRLKKGEGSLPPEL 493
Query: 504 LRAIVXXXXXXXXXXXXXXXXXXXVNNQDRVSGKIAEDQLRHLESNGKDAQAVSSSNVQS 563
L+AI QDR S K EDQ R LE GK++QA +SSN
Sbjct: 494 LQAISPPPLELQTQRQISPAIGKV---QDRSSDKTGEDQARSLEC-GKESQAAASSNGPI 549
Query: 564 LPKEEAYAGDDKAAVSPV-GQGMSAVTKEPAPVVVPGKEEQQAPVSSVKSDQEVECGLLR 622
KEE GD + A++ Q + KE V KEEQQ V VKSDQ + +
Sbjct: 550 FSKEEDNVGDTEVALTTGHSQLFQNLGKEATSTDVATKEEQQTDVFPVKSDQGADSSTQK 609
Query: 623 TQQQSDFPADRGKSVAPQVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTR 682
+ SD AD+GK+VA D Q K P QA + PKD +ARKY+GPLFDFPFFTR
Sbjct: 610 NPR-SDSTADKGKAVAS-----DGSQSKVPPQANSPQPPKDTASARKYYGPLFDFPFFTR 663
Query: 683 KHDSVGSTAMVNSSNNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIR 742
K DS GS A N++NNLTLAYD+KDL+ EEG E L KKR+++LKKI+G+LA NLERKRIR
Sbjct: 664 KLDSYGS-ATANANNNLTLAYDIKDLICEEGAEFLSKKRTDSLKKINGLLAKNLERKRIR 722
Query: 743 PDLVLRLQIEXXXXXXXXXXXXXXXEVDQQQQEIMAMPDRQYRKFVRLCERQRVELMRQV 802
PDLVLRLQIE EVD+QQQEIM+MPDR YRKFVRLCERQR+E+ RQV
Sbjct: 723 PDLVLRLQIEEKKLRLSDLQSRVREEVDRQQQEIMSMPDRPYRKFVRLCERQRLEMNRQV 782
Query: 803 QTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRN 862
+QKA+REKQLK+I QWRKKLLEAHWAIRDARTARNRGVAKYHE++LREFSKRKDD RN
Sbjct: 783 LANQKAVREKQLKTIFQWRKKLLEAHWAIRDARTARNRGVAKYHEKMLREFSKRKDDGRN 842
Query: 863 KRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXXXXX 922
KRMEALKNNDVERYREMLLEQQT++PGDAAERYAVLSSFLTQTE+YL+KLG KIT
Sbjct: 843 KRMEALKNNDVERYREMLLEQQTNMPGDAAERYAVLSSFLTQTEDYLHKLGGKITATKNQ 902
Query: 923 XXXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLA 982
RLQGLSEEEVR+AA CA EEV+IRNRF EMNAP++ SSVNKYY+LA
Sbjct: 903 QEVEEAANAAAVAARLQGLSEEEVRAAATCAREEVVIRNRFTEMNAPKENSSVNKYYTLA 962
Query: 983 HAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1042
HAVNE V+RQPSML+AGTLRDYQ+VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY
Sbjct: 963 HAVNEVVVRQPSMLQAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY 1022
Query: 1043 LMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFN 1102
LMEFKGNYGPHLIIVPNAVLVNWKSELH WLPSVSCIYYVG KDQRS+LFSQEV A+KFN
Sbjct: 1023 LMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIYYVGTKDQRSKLFSQEVCAMKFN 1082
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ
Sbjct: 1083 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1142
Query: 1163 NDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
ND P+VFDNRKAFHDWF+QPFQKEGP HN +DDWLETEKKVI+IHRLHQ
Sbjct: 1143 NDLKELWSLLNLLLPDVFDNRKAFHDWFAQPFQKEGPAHNIEDDWLETEKKVIVIHRLHQ 1202
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1282
ILEPFMLRRRVEDVEGSLP KVS+VLRCRMSAIQSA+YDWIKATGTLRVDP+DEK R QK
Sbjct: 1203 ILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQK 1262
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR 1342
NPIYQAK+Y+TLNNRCMELRK CNHPLLNYPYF+D SKDFLV+SCGKLWILDRILIKLQR
Sbjct: 1263 NPIYQAKIYRTLNNRCMELRKACNHPLLNYPYFNDFSKDFLVRSCGKLWILDRILIKLQR 1322
Query: 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402
TGHRVLLFSTMTKLLDILEEYLQWR+LVYRRIDGTTSLEDRESAIVDFN D+DCFIFLL
Sbjct: 1323 TGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLL 1382
Query: 1403 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 1462
SIRAAGRGLNLQ+ADTV+IYDPDPNPKNEEQAVARAHRIGQ REVKVIYMEAVV+K+SSH
Sbjct: 1383 SIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQTREVKVIYMEAVVEKLSSH 1442
Query: 1463 QKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE 1522
QKEDELRSGG+VDLEDD+AGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE
Sbjct: 1443 QKEDELRSGGSVDLEDDMAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHE 1502
Query: 1523 ERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYD 1582
ERRMTLETLLHDEERYQETVHDVPSL EVNRMIARSE+EVELFDQMDEEF W EEMT ++
Sbjct: 1503 ERRMTLETLLHDEERYQETVHDVPSLHEVNRMIARSEEEVELFDQMDEEFDWTEEMTNHE 1562
Query: 1583 QVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRG-PKGKKYPNYKE 1641
QVPKWLRAST+EVNAT+A+LSKKPSKN+L SN+ V G ERKRG PK KK NYKE
Sbjct: 1563 QVPKWLRASTREVNATVADLSKKPSKNMLSSSNLIVQPGGPGGERKRGRPKSKKI-NYKE 1621
Query: 1642 VDDEIGEYSEASSDERNGYPVQXXXXXXXXXXXXXYSGAVGAPLSNKDQSEEDGPVCEGG 1701
++D+I YSE SS+ERN +GA+G +NK + + + PVC G
Sbjct: 1622 IEDDIAGYSEESSEERNIDSGNEEEGDIRQFDDDELTGALGDHQTNKGEFDGENPVC--G 1679
Query: 1702 YDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLSALEARPGSLSKRM 1761
YDY S + + N ++A R ++ SPVS QKFGSLSAL+ RPGS+SKR+
Sbjct: 1680 YDYPPGSGSYKKNPPRDDAGSSGSSPESHRSKEMASPVSSQKFGSLSALDTRPGSVSKRL 1739
Query: 1762 PDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPE 1821
D+LEEGEIA SGDSH+D Q+SGSW HDRDEG++EQVLQP IKRKRSIR+RPR T ER +
Sbjct: 1740 LDDLEEGEIAASGDSHIDLQRSGSWAHDRDEGDEEQVLQPTIKRKRSIRLRPRQTAERVD 1799
Query: 1822 ERSCTDTPLHRGDSSLLPFQMDNKYPAQLRT--DTEMKAHGESNSLRHDQSEPSSKSRRN 1879
++ P + P Q+D Y ++LRT D+ +S+S +S P+ K
Sbjct: 1800 G---SEMPAAQ------PLQVDRSYRSKLRTVVDSHSSRQDQSDSSSRLRSVPAKKVAST 1850
Query: 1880 LPSRKIANAPKS 1891
S+ ++PKS
Sbjct: 1851 --SKLHVSSPKS 1860
|
|
| ASPGD|ASPL0000042729 AN2278 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 3.0e-129, Sum P(6) = 3.0e-129
Identities = 260/732 (35%), Positives = 405/732 (55%)
Query: 803 QTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYH-ERILREFSKRKDDDR 861
+ + + M+++ L+ ++ +KL + RDAR +R + H + I+ ++ ++
Sbjct: 341 RATHRRMKKQSLRE-ARITEKLEKQQ---RDARESREKRKQDVHLQAIVNHGAELRETAS 396
Query: 862 NKRMEA--LKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXX 919
+R A L ++ ++ M E+Q + A +R L + E YL LG
Sbjct: 397 QQRQRAGKLGRMMLQHHQHMEREEQRRVERTAKQRLQALKA--NDEETYLKLLGQ----A 450
Query: 920 XXXXXXXXXXXXXXXXXRLQGLSEEEVRSAAACAGEEVMIRN---RFLEMNAPRDGSSVN 976
+L ++ R+ A GEE + + + +G
Sbjct: 451 KDSRISHLLNQTDGFLKQLAASVRQQQRNQAERYGEEHDFDDDDDEDIASGSDEEGEGRR 510
Query: 977 K--YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
K YY++AH + E + QPS+L GTL++YQ+ GLQWM+SLYNN LNGILADEMGLGKT+
Sbjct: 511 KIDYYAVAHRIKEEITEQPSILVGGTLKEYQMKGLQWMISLYNNNLNGILADEMGLGKTI 570
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q ++LI +++E K N GP L+IVP + L NW E KW PSVS I Y G + R + Q
Sbjct: 571 QTISLITHIIERKRNNGPFLVIVPLSTLTNWNLEFEKWAPSVSRIVYKGPPNARKQQ-QQ 629
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR-R 1153
+ F VL+TTYE+I+ DR LSK+ W ++I+DE RMK+ +S L+ L +Y R R
Sbjct: 630 NIRWGNFQVLLTTYEYIIKDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYR 689
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
L+LTGTPLQN+ P +F + K+F +WF+ PF G D L E++
Sbjct: 690 LILTGTPLQNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMD---LTEEEQ 746
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
+++I RLH++L PF+LRR +DVE LP K V++CR SA+Q+ + + AT V
Sbjct: 747 LLVIRRLHKVLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNKQL-ATHNKMVVS 805
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL------SKDFLVKSC 1327
+ + +V + L+N M+LRK CNHP + + D + D + ++
Sbjct: 806 DGKGGKVGM---------RGLSNMLMQLRKLCNHPFV-FEQVEDQVNPGRGTNDLIWRTA 855
Query: 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387
GK +LDRIL K + TGHRVL+F MT++++I+E++L+ R + Y R+DG+T +DR +
Sbjct: 856 GKFELLDRILPKFKATGHRVLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLL 915
Query: 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447
FN+ DS+ F FLLS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQK EV
Sbjct: 916 KLFNAPDSEYFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 975
Query: 1448 KVIYMEAVVDKISSHQKEDEL--RSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDM 1505
+++ + I+S+ E+++ R+ +D++ + ++ R+ + + ++
Sbjct: 976 RILRL------ITSNSVEEKILERAQFKLDMDGKVIQAGKFDNKSTNEERDALLRTLLET 1029
Query: 1506 ADEVINAGRFDQ 1517
A+ AG D+
Sbjct: 1030 AEGTDQAGDQDE 1041
|
|
| POMBASE|SPAC1250.01 snf21 "ATP-dependent DNA helicase Snf21" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1047 (373.6 bits), Expect = 2.1e-128, Sum P(5) = 2.1e-128
Identities = 231/506 (45%), Positives = 310/506 (61%)
Query: 954 GEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWML 1013
GE + MN P D ++ YY++AH + E V QPS+L G L++YQ+ GLQWM+
Sbjct: 372 GESAYDEDMDRRMN-PEDDRKID-YYNVAHNIREVVTEQPSILVGGKLKEYQLRGLQWMI 429
Query: 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWL 1073
SLYNN LNGILADEMGLGKT+Q ++LI +L+E K GP L+IVP + L NW E +W
Sbjct: 430 SLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWA 489
Query: 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQR 1133
PS+ I Y G R L Q V F VL+TTYE+I+ DR LS++ W Y+IIDE R
Sbjct: 490 PSIVKIVYKGPPQVRKALHPQ-VRHSNFQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHR 548
Query: 1134 MKDRESVLARDLDRYRCQR-RLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQ 1192
MK+ +S L L Y R RL+LTGTPLQN+ P +F++ K+F +WF+
Sbjct: 549 MKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNT 608
Query: 1193 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRM 1252
PF G D L E+ +++I RLH++L PF+LRR +DVE LP KV V+RC+M
Sbjct: 609 PFANTG---GQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQM 665
Query: 1253 SAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312
S +Q +Y +K G L V ED KR K I K L N M+L+K CNHP +
Sbjct: 666 SGLQQKLYYQMKKHGMLYV--EDAKRG--KTGI------KGLQNTVMQLKKICNHPFV-- 713
Query: 1313 PYFSDLSK---------DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 1363
F D+ + D L + GK +LDRIL KL R+GHR+L+F MT++++I+E+Y
Sbjct: 714 --FEDVERSIDPTGFNYDMLWRVSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDY 771
Query: 1364 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD 1423
L +RQ Y R+DG+T +DR + FN ++ +FLLS RA G GLNLQ+ADTVII+D
Sbjct: 772 LHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFD 831
Query: 1424 PDPNPKNEEQAVARAHRIGQKREVKV 1449
D NP + QA RAHRIGQ +EV++
Sbjct: 832 SDWNPHQDLQAQDRAHRIGQTKEVRI 857
|
|
| UNIPROTKB|D4AA07 Smarca4 "Transcription activator BRG1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1078 (384.5 bits), Expect = 1.3e-120, Sum P(4) = 1.3e-120
Identities = 280/717 (39%), Positives = 396/717 (55%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 527 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 586
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 587 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 645
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 646 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 705
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 706 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 760
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 761 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 820
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 821 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 873
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 874 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 933
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 934 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 993
Query: 1443 QKREVKVIYM---EAVVDKISSHQKEDELRSGGTVDLEDDLAGK-DRYIGSIEGLIRNNI 1498
Q+ EV+V+ + +V +KI + K +L VD + AG D+ S E R +
Sbjct: 994 QQNEVRVLRLCTVNSVEEKILAAAKY-KLN----VDQKVIQAGMFDQKSSSHER--RAFL 1046
Query: 1499 QQY-KIDMADEVINAGRFDQRTTHEERRMTLETLLHD-EERYQETVHDVPSLQEVNRMIA 1556
Q + + DE + + + D EE + +VP + VN+MIA
Sbjct: 1047 QAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIA 1106
Query: 1557 RSEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEVNATIANLSKKPSK 1608
R E+E +LF +MD EE + R D++P W+ K+ +A + L+ + +
Sbjct: 1107 RHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD-DAEVERLTCEEEE 1162
Query: 1609 NILFGSNIG----VDSGEIETER---KRGPKGKKYPNYKEVDDEIGEYSEASSDERN 1658
+FG VD + TE+ K+ + +E+++E+ + + +R+
Sbjct: 1163 EKMFGRGSRHRKEVDYSDSLTEKQWLKQLKAAIEEGTLEEIEEEVRQKKSSRKRKRD 1219
|
|
| DICTYBASE|DDB_G0271052 snf2b "SNF2-related protein Snf2a" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1070 (381.7 bits), Expect = 5.8e-118, Sum P(9) = 5.8e-118
Identities = 221/479 (46%), Positives = 308/479 (64%)
Query: 973 SSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGK 1032
S + YYS AH++ E ++ QP++L G L+ YQ+ GLQWM+SLYNNKLNGILADEMGLGK
Sbjct: 1683 SKAHSYYSKAHSIQEDIIEQPALLEGGKLKPYQMQGLQWMVSLYNNKLNGILADEMGLGK 1742
Query: 1033 TVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLF 1092
T+Q +AL++YL+E K N GP L++VP + L NW E KW P V + Y G K R F
Sbjct: 1743 TIQTIALVSYLIEVKKNNGPFLVVVPLSTLSNWGQEFSKWAPKVKRVLYYGDKPARKSKF 1802
Query: 1093 SQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQ 1151
+ +A +FN +VTTYE+I+ D++ LSK+ W Y+I+DE RMK+ S L+ L Y +
Sbjct: 1803 EEFIAPGQFNAVVTTYEYIIKDKNALSKIKWNYLIVDEGHRMKNYTSKLSIILGTSYSSR 1862
Query: 1152 RRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1211
RLLLTGTPLQN P +FD + F WF+ PF + G ++ E
Sbjct: 1863 YRLLLTGTPLQNSLPELWALLNFLLPTIFDCVEDFEQWFNAPFAQTGEKIEMNE-----E 1917
Query: 1212 KKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271
++++II RLH++L PF+LRR ++VE LP KV VL+C MSA Q+ +YD IK G ++
Sbjct: 1918 EQLLIIQRLHKVLRPFLLRRLKKEVEAQLPDKVEKVLKCDMSAFQAKMYDLIKTKGVSKL 1977
Query: 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLW 1331
NP K+ K L N ++LRK CNHP L Y ++ D L++ GK
Sbjct: 1978 ASSGG---ADGNP----KLAKGLKNTYVQLRKICNHPYLFYDDEYNID-DNLIRYAGKFD 2029
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
+LDR+L KL+ GHRVL+FS MT+L++ILE + ++ + R+DG+T ++R + FN
Sbjct: 2030 LLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGHLLELFN 2089
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
+ +S+ FIF+LS RA G GLNLQ+ADTVII+D D NP+ + QA RAHRIGQK+ V+V+
Sbjct: 2090 APNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQKQTVRVL 2148
|
|
| TAIR|locus:2150270 CHR23 "chromatin remodeling 23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 5.9e-118, Sum P(2) = 5.9e-118
Identities = 184/530 (34%), Positives = 289/530 (54%)
Query: 776 IMAMPDRQYR---KFVRLCERQRVELMRQVQTSQKAMR----EKQLKSISQWRKKLLEAH 828
+M +P R Y FV + Q R + +++ +R EK L +Q RK E
Sbjct: 167 MMRLPRRMYGVGDSFVMEADDQ----FRNKRDAERLLRLEEEEKNLIETTQ-RKFFAEVL 221
Query: 829 WAIRDART---ARNRGVAKYHERILREFSK-RKDDDRNKRME--ALKNNDVERYREMLLE 882
A+R+ + A +R + ++ + K R+ R +++ ALK++D E Y ++ E
Sbjct: 222 NAVREFQLQIQASHRRCKQRNDGVQAWHGKQRQRATRAEKLRIMALKSDDQEEYMKLAKE 281
Query: 883 QQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITXXXXXXXXXXXXXXXXXXXRLQGL- 941
+ E+ L+ FL +T + LG+ + L +
Sbjct: 282 SKN-------EK---LTLFLEETNKIFVSLGAAVQRQKDAKLSENTKLLKGSESDLSDVD 331
Query: 942 SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLA-HAVNERVMRQPSMLRAGT 1000
+ E+V A E++ + + N +G + ++LA H++ E+V +QPS+L+ G
Sbjct: 332 APEDVLPAQDI---EIIDSDNNDDSNDLLEGE---RQFNLAIHSIQEKVTKQPSLLQGGE 385
Query: 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060
LR YQ+ GLQWM+SLYNN NGILADEMGLGKT+Q +ALIAYL+E K +GPHLI+ P A
Sbjct: 386 LRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKA 445
Query: 1061 VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK 1120
VL NW++E W PS+S Y G+K++R+ + ++ +A KFNVL+T Y+ IM D++ L K
Sbjct: 446 VLPNWENEFALWAPSISAFLYDGSKEKRTEIRAR-IAGGKFNVLITHYDLIMRDKAFLKK 504
Query: 1121 VDWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRLLLTGTPLQNDXXXXXXXXXXXXPEV 1179
+DW Y+I+DE R+K+ E LA+ L YR +RRLLLTGTP+QN P +
Sbjct: 505 IDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHI 564
Query: 1180 FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGS 1239
F++ F +WF+ PF + G D E++++II+RLH ++ PF+LRR+ +VE
Sbjct: 565 FNSIHNFEEWFNTPFAECGSASLTD------EEELLIINRLHHVIRPFLLRRKKSEVEKF 618
Query: 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
LP K ++L+C MSA Q Y + G + + + K + +N Q +
Sbjct: 619 LPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHSGNGKSKSLQNLTMQLR 668
|
|
| UNIPROTKB|P51532 SMARCA4 "Transcription activator BRG1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1086 (387.4 bits), Expect = 4.0e-117, Sum P(4) = 4.0e-117
Identities = 281/714 (39%), Positives = 396/714 (55%)
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
+ YY++AHAV ERV +Q +++ G L+ YQI GL+W++SLYNN LNGILADEMGLGKT+
Sbjct: 728 LQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTI 787
Query: 1035 QVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094
Q +ALI YLME K GP LIIVP + L NW E KW PSV + Y G+ R R F
Sbjct: 788 QTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAAR-RAFVP 846
Query: 1095 EVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRR 1153
++ + KFNVL+TTYE+I+ D+ L+K+ WKY+I+DE RMK+ L + L+ Y RR
Sbjct: 847 QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR 906
Query: 1154 LLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
LLLTGTPLQN P +F + F WF+ PF G D L E+
Sbjct: 907 LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD---LNEEET 961
Query: 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP 1273
++II RLH++L PF+LRR ++VE LP KV V++C MSA+Q +Y ++A G L D
Sbjct: 962 ILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG 1021
Query: 1274 EDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------- 1322
++ ++ + KTL N M+LRK CNHP + S+
Sbjct: 1022 SEKDKKGKGGT-------KTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLD 1074
Query: 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
L ++ GK +LDRIL KL+ T H+VLLF MT L+ I+E+Y +R Y R+DGTT ED
Sbjct: 1075 LYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAED 1134
Query: 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
R + FN S+ FIFLLS RA G GLNLQSADTVII+D D NP + QA RAHRIG
Sbjct: 1135 RGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIG 1194
Query: 1443 QKREVKVIYM---EAVVDKISSHQKEDELRSGGTVDLEDDLAGK-DRYIGSIEGLIRNNI 1498
Q+ EV+V+ + +V +KI + K +L VD + AG D+ S E R +
Sbjct: 1195 QQNEVRVLRLCTVNSVEEKILAAAKY-KLN----VDQKVIQAGMFDQKSSSHER--RAFL 1247
Query: 1499 QQY-KIDMADEVINAGRFDQRTTHEERRMTLETLLHD-EERYQETVHDVPSLQEVNRMIA 1556
Q + + DE + + + D EE + +VP + VN+MIA
Sbjct: 1248 QAILEHEEQDESRHCSTGSGSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIA 1307
Query: 1557 RSEDEVELFDQMD-----EEFGWIEEMTRY---DQVPKWLRASTKEVNATIANLSKKPSK 1608
R E+E +LF +MD EE + R D++P W+ K+ +A + L+ + +
Sbjct: 1308 RHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWI---IKD-DAEVERLTCEEEE 1363
Query: 1609 NILFGSNIG----VDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEASSDERN 1658
+FG VD + TE K+ K + +E+++E+ + + +R+
Sbjct: 1364 EKMFGRGSRHRKEVDYSDSLTE-KQWLKAIEEGTLEEIEEEVRQKKSSRKRKRD 1416
|
|
| CGD|CAL0003962 orf19.239 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 1078 (384.5 bits), Expect = 3.4e-116, Sum P(4) = 3.4e-116
Identities = 263/724 (36%), Positives = 408/724 (56%)
Query: 956 EVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSL 1015
EV + N+ + R+ + YY +AH + E++ QP++L G L++YQ+ GL+WM+SL
Sbjct: 459 EVAVENKSDDKAELREKTD---YYEVAHRIKEKITEQPTILVGGKLKEYQMKGLEWMVSL 515
Query: 1016 YNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS 1075
YNN LNGILADEMGLGKT+Q ++L+ YL+E K + LIIVP + + NW E KW PS
Sbjct: 516 YNNHLNGILADEMGLGKTIQSISLVTYLIE-KKHENKFLIIVPLSTITNWTLEFEKWAPS 574
Query: 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 1135
+ I Y G++ QR R ++ F VL+TTYE+++ +R L+K + ++IIDE RMK
Sbjct: 575 IKVIVYKGSQQQR-RSLQPDIRYGNFQVLLTTYEYVIRERPMLAKFHYSHMIIDEGHRMK 633
Query: 1136 DRESVLARDLDRY-RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPF 1194
+ +S L++ L Y + + RL+LTGTPLQN+ P +F++ K+F DWF+ PF
Sbjct: 634 NAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALLNFVLPGIFNSVKSFDDWFNTPF 693
Query: 1195 QKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSA 1254
G + L E+ +++I RLH++L PF+LRR +DVE LP KV VL+C +S
Sbjct: 694 ANTGAQEKIE---LTEEESLLVIRRLHKVLRPFLLRRLKKDVEKDLPDKVEKVLKCNLSG 750
Query: 1255 IQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL---- 1310
+Q +Y + L V + K+ I K LNN+ M+LRK CNHP +
Sbjct: 751 LQYVLYQQMLKHNALFVGADVGGA---KSGI------KGLNNKIMQLRKICNHPFVFEEV 801
Query: 1311 -NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369
+ S L+ D + + GK +LDR+L K +++GHRVL+F MT+++DI+E++L+W+ +
Sbjct: 802 ESVLNSSRLTNDLIWRVSGKFELLDRVLPKFKKSGHRVLMFFQMTQIMDIMEDFLRWKDM 861
Query: 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPK 1429
Y R+DG+T E+R+ + FN+ DSD F FLLS RA G GLNLQ+ADTVII+D D NP
Sbjct: 862 KYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPH 921
Query: 1430 NEEQAVARAHRIGQKREVKVIYM---EAVVDKI--SSHQKED---ELRSGGTVDLEDDLA 1481
+ QA RAHRIGQK EV+++ + ++V + I +HQK D ++ G D +
Sbjct: 922 QDLQAQDRAHRIGQKNEVRILRLITNDSVEEVILERAHQKLDIDGKVIQAGKFDNKSTAE 981
Query: 1482 GKDRYIGSIEGLIRNNIQQYKID-MADEVINAGRFDQRTTHEERRMTLETLLHDEERYQE 1540
++ ++ + N + D + D+ +N + EE ++ ++ DEER E
Sbjct: 982 EQEAFLKRLLEADANGADNEENDSLDDDELN----EILARSEEEKVLFASM--DEERKSE 1035
Query: 1541 TVHDVPSLQEVNRMIAR-SEDEVELFDQMDEEFGWIEEM--TRYDQ---VPKWLRASTKE 1594
V L E + + A +ED F++ ++E + + RYD +WL+A +
Sbjct: 1036 KVPYKSRLIEKDELPAVFTEDISHHFEKKEKELSKMRDKKRVRYDDGLSEEQWLKAMDDD 1095
Query: 1595 VNATIANLSKKPSKNILFGS-NIGVDSGEIETERKRGPKGKKYPNYKEVDDEIGEYSEAS 1653
N T+ K+ + I N + G +E + K G E DDE ++ EA+
Sbjct: 1096 -NDTVEEAIKRKEERIAKRKRNKAIREGLLEEDIKDDEVG-------EEDDE--DFEEAA 1145
Query: 1654 SDER 1657
+
Sbjct: 1146 QPRK 1149
|
|
| SGD|S000001388 STH1 "ATPase component of the RSC chromatin remodeling complex" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 1071 (382.1 bits), Expect = 3.9e-116, Sum P(3) = 3.9e-116
Identities = 249/628 (39%), Positives = 364/628 (57%)
Query: 978 YYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVM 1037
YY +AH + E++ +QPS+L GTL++YQ+ GL+WM+SLYNN LNGILADEMGLGKT+Q +
Sbjct: 447 YYEVAHRIKEKIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSI 506
Query: 1038 ALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097
+LI YL E K + GP L+IVP + + NW E KW PS++ I Y G +QR L ++
Sbjct: 507 SLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSL-QHQIR 565
Query: 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLL 1156
F+VL+TTYE+I+ D+S LSK DW ++IIDE RMK+ +S L+ + Y R + RL+L
Sbjct: 566 VGNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLIL 625
Query: 1157 TGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216
TGTPLQN+ P++F++ K F DWF+ PF G + L E+ ++I
Sbjct: 626 TGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLE---LTEEETLLI 682
Query: 1217 IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276
I RLH++L PF+LRR ++VE LP KV V++C++S +Q +Y + L V E
Sbjct: 683 IRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTE 742
Query: 1277 KRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL-----NYPYFSDLSKDFLVKSCGKLW 1331
K I K LNN+ M+LRK CNHP + S + D L + GK
Sbjct: 743 G--ATKGGI------KGLNNKIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFE 794
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
+LDR+L K + +GHRVL+F MT+++DI+E++L+ + L Y R+DG+T E+R + FN
Sbjct: 795 LLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFN 854
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
+ DSD F FLLS RA G GLNLQ+ADTVII+D D NP + QA RAHRIGQK EV+++
Sbjct: 855 APDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILR 914
Query: 1452 M---EAVVDKISSH--QKED---ELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKI 1503
+ ++V + I QK D ++ G D + ++ ++ + N K
Sbjct: 915 LITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQEAFLRRLIESETNRDDDDKA 974
Query: 1504 DMADEVIN---AGRFDQRTTHEE---RRMTLETLLHDEERYQETVHDVPSLQEVNRMIAR 1557
++ D+ +N A D++ ++ RM E + + + L E+ ++
Sbjct: 975 ELDDDELNDTLARSADEKILFDKIDKERMNQERADAKAQGLRVPPPRLIQLDELPKVFR- 1033
Query: 1558 SEDEVELFDQMDEE-FGWIEEMTR--YD 1582
ED E F + D E G I + R YD
Sbjct: 1034 -EDIEEHFKKEDSEPLGRIRQKKRVYYD 1060
|
|
| POMBASE|SPCC1620.14c snf22 "ATP-dependent DNA helicase Snf22" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 4.2e-116, Sum P(5) = 4.2e-116
Identities = 225/497 (45%), Positives = 304/497 (61%)
Query: 965 EMNAPRDGSSVN-KYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGI 1023
E+ AP N Y+ +AH ++E V QP + GTL+DYQ+ GL+WMLSLYNN LNGI
Sbjct: 833 ELEAPISEEDKNLDYFKVAHRIHEEV-EQPKIFVGGTLKDYQLKGLEWMLSLYNNNLNGI 891
Query: 1024 LADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVG 1083
LADEMGLGKT+Q +A I YL+E K GP LIIVP + L NW E KW PSV I Y G
Sbjct: 892 LADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAYKG 951
Query: 1084 AKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143
R L SQ + + FNVL+TT+E+I+ DR LS++ W ++IIDE R+K+ +S L
Sbjct: 952 PPQLRKTLQSQ-IRSSNFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTS 1010
Query: 1144 DLDRY-RCQRRLLLTGTPLQNDXXXXXXXXXXXXPEVFDNRKAFHDWFSQPFQKEGPTHN 1202
L Y Q RL+LTGTPLQN+ P++F++ K+F +WF+ PF G
Sbjct: 1011 TLSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTG---G 1067
Query: 1203 ADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW 1262
D L E+ ++II RLH++L PF+ RR +DVE LP KV V++C +S +Q +Y
Sbjct: 1068 QDKIGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQ 1127
Query: 1263 IKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK-- 1320
+K G L VD E K + K L N M+L+K CNHP + F D+ +
Sbjct: 1128 MKKHGMLFVDGEKGKTGI-----------KGLQNTVMQLKKICNHPFI----FEDVERAI 1172
Query: 1321 -------DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373
D L ++ GK +LDRIL KL TGH+ L+F MT+++ I+E+YL+ + Y R
Sbjct: 1173 DPSGTNVDLLWRAAGKFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLR 1232
Query: 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 1433
+DG+T +DR S + FN SD +IF+LS RA G GLNLQ+ADTVII+D D NP + Q
Sbjct: 1233 LDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQ 1292
Query: 1434 AVARAHRIGQKREVKVI 1450
A RAHRIGQ +EV+++
Sbjct: 1293 AQDRAHRIGQTKEVRIL 1309
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6EVK6 | BRM_ARATH | 3, ., 6, ., 4, ., 1, 2 | 0.6734 | 0.9683 | 0.9890 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.12 | 0.991 |
| 3rd Layer | 3.6.4 | 0.976 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2240 | |||
| PLN03142 | 1033 | PLN03142, PLN03142, Probable chromatin-remodeling | 1e-130 | |
| pfam00176 | 301 | pfam00176, SNF2_N, SNF2 family N-terminal domain | 1e-100 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 1e-90 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-34 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 1e-27 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 3e-27 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 4e-21 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 4e-20 | |
| smart00297 | 107 | smart00297, BROMO, bromo domain | 2e-12 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 9e-11 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 2e-08 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-07 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 4e-07 | |
| smart00951 | 36 | smart00951, QLQ, QLQ is named after the conserved | 5e-06 | |
| cd04369 | 99 | cd04369, Bromodomain, Bromodomain | 9e-06 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 0.002 | |
| pfam11496 | 279 | pfam11496, HDA2-3, Class II histone deacetylase co | 0.003 |
| >gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Score = 436 bits (1123), Expect = e-130
Identities = 228/611 (37%), Positives = 341/611 (55%), Gaps = 85/611 (13%)
Query: 851 REFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERY-AVLSSFLTQTEEYL 909
E SKR + R K ++ K ++++ +L +Q +I D + L L QTE +
Sbjct: 55 AEISKR-EKARLKELKKQKKQEIQK---ILEQQNAAIDADMNNKGKGRLKYLLQQTEIFA 110
Query: 910 YKLGSKITAAKNQQEVEEAANAAAAAARLQG---LSEEEVRSAAACAGEEVMIRNRFLEM 966
+ +++A+A A R + L+EEE EE
Sbjct: 111 HFAKG-----------DQSASAKKAKGRGRHASKLTEEE--EDEEYLKEE---------- 147
Query: 967 NAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILAD 1026
DG + R++ QPS ++ G +RDYQ+ GL W++ LY N +NGILAD
Sbjct: 148 ---EDGLGGSG--------GTRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILAD 195
Query: 1027 EMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKD 1086
EMGLGKT+Q ++L+ YL E++G GPH+++ P + L NW +E+ ++ P + + + G +
Sbjct: 196 EMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPE 255
Query: 1087 QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146
+R+ + + A KF+V VT++E + +++ L + W+YIIIDEA R+K+ S+L++ +
Sbjct: 256 ERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMR 315
Query: 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDD 1206
+ RLL+TGTPLQN+L ELW+LLN LLPE+F + + F +W FQ G +
Sbjct: 316 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEW----FQISGENDQQE-- 369
Query: 1207 WLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKAT 1266
++ +LH++L PF+LRR DVE LPPK +L+ MS +Q Y
Sbjct: 370 ---------VVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYY------ 414
Query: 1267 GTLRVDPEDEKRRVQKN--PIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYFSDL 1318
K +QK+ + K L N M+LRK CNHP L PY +
Sbjct: 415 ----------KALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG- 463
Query: 1319 SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT 1378
+ LV++ GK+ +LD++L KL+ RVL+FS MT+LLDILE+YL +R Y RIDG T
Sbjct: 464 --EHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNT 521
Query: 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438
EDR+++I FN S+ F+FLLS RA G G+NL +AD VI+YD D NP+ + QA RA
Sbjct: 522 GGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRA 581
Query: 1439 HRIGQKREVKV 1449
HRIGQK+EV+V
Sbjct: 582 HRIGQKKEVQV 592
|
Length = 1033 |
| >gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain | Back alignment and domain information |
|---|
Score = 324 bits (832), Expect = e-100
Identities = 128/312 (41%), Positives = 183/312 (58%), Gaps = 17/312 (5%)
Query: 1004 YQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-YLMEFKGNYGPHLIIVPNAVL 1062
YQ+ G+ W++SL +N L GILADEMGLGKT+Q +AL+A YL E K GP L++ P + L
Sbjct: 1 YQLEGVNWLISLESNGLGGILADEMGLGKTLQTIALLATYLKEGKDRRGPTLVVCPLSTL 60
Query: 1063 VNWKSELHKWLPSVSCIYYVGAKDQRSRLF-SQEVAALKFNVLVTTYEFIM---YDRSKL 1118
NW +E KW P++ + Y G +RS+L S ++V++TTYE + S L
Sbjct: 61 HNWLNEFEKWAPALRVVVYHGDGRERSKLRQSMAKRLDTYDVVITTYEVLRKDKKLLSLL 120
Query: 1119 SKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPE 1178
+KV+W +++DEA R+K+ +S L + L + + + RLLLTGTP+QN+L+ELW+LLN L P
Sbjct: 121 NKVEWDRVVLDEAHRLKNSKSKLYKALKKLKTRNRLLLTGTPIQNNLEELWALLNFLRPG 180
Query: 1179 VFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG 1238
F + K F +WF+ P N + E K+ I+RLH++L+PF+LRR +DVE
Sbjct: 181 PFGSFKVFEEWFNIPIANTADNKNKNL---EKGKE--GINRLHKLLKPFLLRRTKDDVEK 235
Query: 1239 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298
SLPPK VL C +S Q +Y + L + E +L N
Sbjct: 236 SLPPKTEHVLYCNLSDEQRKLYKKLLTKRRLALSFAVEGGEKNVG-------IASLLNLI 288
Query: 1299 MELRKTCNHPLL 1310
M+LRK CNHP L
Sbjct: 289 MQLRKICNHPYL 300
|
This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g. ERCC6, RAD16, RAD5), DNA recombination (e.g. RAD54), and chromatin unwinding (e.g. ISWI) as well as a variety of other proteins with little functional information (e.g. lodestar, ETL1). Length = 301 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 316 bits (810), Expect = 1e-90
Identities = 185/529 (34%), Positives = 267/529 (50%), Gaps = 50/529 (9%)
Query: 999 GTLRDYQIVGLQWMLS-LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY-GPHLII 1056
LR YQ+ G+ W+ L +N L GILAD+MGLGKTVQ +AL+ L+E Y GP LI+
Sbjct: 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIV 396
Query: 1057 VPNAVLVNWKSELHKWLPSVSCI--YYVGAKDQRSRL-----FSQEVAALKFNVLVTTYE 1109
VP ++L NWK E K+ P + + Y+ + + + + F+V++TTYE
Sbjct: 397 VPASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYE 456
Query: 1110 FI---MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLK 1166
+ + D L K++W +++DEA R+K+ +S + L + RL LTGTPL+N L
Sbjct: 457 LLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLG 516
Query: 1167 ELWSLLNL-LLPEVFDNRKA-FHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
ELWSLL L P + A F F +P Q E +D E + + I L ++L
Sbjct: 517 ELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAE-------EDIGPLEARELGIELLRKLL 569
Query: 1225 EPFMLRRRVEDVE--GSLPPKVSIVLRCRMSAIQSAIY-DWIKATGTLRVDPEDEKRRVQ 1281
PF+LRR EDVE LPPK+ VL C +S Q +Y ++ + ED +
Sbjct: 570 SPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDL-EKAD 628
Query: 1282 KNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP-----------------YFSDLSKDFLV 1324
+ + LR+ CNHP L F L K +
Sbjct: 629 SDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQ 688
Query: 1325 KSCGKLWILDRIL---IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
S GKL LD +L + + H+VL+FS T +LD+LE+YL+ + Y R+DG+T +
Sbjct: 689 LSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAK 748
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
R+ I FN+ D + +FLLS++A G GLNL ADTVI++DP NP E QA+ RAHRI
Sbjct: 749 RRQELIDRFNA-DEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRI 807
Query: 1442 GQKREVKVIYMEAVVD---KISSHQKEDELRSGGTVDLEDDLAGKDRYI 1487
GQKR VKV + KI Q E + ++ + +
Sbjct: 808 GQKRPVKVYRLITRGTIEEKILELQ-EKKQELLDSLIDAEGEKELSKLS 855
|
Length = 866 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-34
Identities = 57/204 (27%), Positives = 85/204 (41%), Gaps = 22/204 (10%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
LR YQ ++ +LS + ILA G GKT+ + + +G G L++VP
Sbjct: 8 PLRPYQKEAIEALLSGLRD---VILAAPTGSGKTLAALLPALEAL-KRGKGGRVLVLVPT 63
Query: 1060 AVLV-NWKSELHKWLPS---VSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFI-- 1111
L W EL K PS Y G ++Q +L S K ++LVTT +
Sbjct: 64 RELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESG-----KTDILVTTPGRLLD 118
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKD--RESVLARDLDR-YRCQRRLLLTGTPLQNDLKEL 1168
+ + KLS + +I+DEA R+ D L + L + + LLL+ TP + L
Sbjct: 119 LLENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEEIENLL 178
Query: 1169 WSLLNLLLPEVFDNRKAFHDWFSQ 1192
LN P D + Q
Sbjct: 179 ELFLN--DPVFIDVGFTPLEPIEQ 200
|
Length = 201 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 1e-27
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 11/147 (7%)
Query: 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS--VSC 1078
+ +LA G GKT+ + I L+ G L++ P L N +E K L +
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELL-DSLKGGQVLVLAPTRELANQVAERLKELFGEGIKV 60
Query: 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD 1136
Y +G + + ++ + K +++V T ++ + R KLS +I+DEA R+ +
Sbjct: 61 GYLIGGTSIKQQE---KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN 117
Query: 1137 RES---VLARDLDRYRCQRRLLLTGTP 1160
+ L L + ++ LLL+ TP
Sbjct: 118 QGFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-27
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 1317 DLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 1376
+ + L KL L +L + + G +VL+F K+LD L E L+ + + G
Sbjct: 1 PIKQYVLPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHG 60
Query: 1377 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 1436
S E+RE + DF + + L++ RG++L + VI YD +P + Q +
Sbjct: 61 DGSQEEREEVLKDFREGE---IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIG 117
Query: 1437 RAHRIGQKREVKVI 1450
RA R GQK ++
Sbjct: 118 RAGRAGQKGTAILL 131
|
Length = 131 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 4e-21
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 1358 DILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1417
+ L E L+ + R+ G S E+RE + FN+ L++ A RGL+L D
Sbjct: 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIK---VLVATDVAERGLDLPGVD 57
Query: 1418 TVIIYDPDPNPKNEEQAVARAHRIG 1442
VIIYD +P + Q + RA R G
Sbjct: 58 LVIIYDLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 4e-20
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1362 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421
+ L+ + R+ G S E+RE + DF + S L++ AGRG++L + VI
Sbjct: 1 KLLRKPGIKVARLHGGLSQEEREEILEDFRNGKSK---VLVATDVAGRGIDLPDVNLVIN 57
Query: 1422 YDPDPNPKNEEQAVARAHRIG 1442
YD NP + Q + RA R G
Sbjct: 58 YDLPWNPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|197636 smart00297, BROMO, bromo domain | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 7/108 (6%)
Query: 1938 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR 1997
+Q K V+ KL H + R E Y + DL+ I ++++
Sbjct: 7 KLQELLKAVLDKLDS------HPLSWPFLKPVSRKEAPDYYDIIKKPM-DLKTIKKKLEN 59
Query: 1998 LEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045
+Y+ V E V+D M A + G EV +A+K+ F L+
Sbjct: 60 GKYSSVEEFVADFNLMFSNARTYNGPDSEVYKDAKKLEKFFEKKLREL 107
|
Length = 107 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 9e-11
Identities = 78/370 (21%), Positives = 108/370 (29%), Gaps = 48/370 (12%)
Query: 3 SGGGPSRNRAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQILRKPD 62
+G GP + T P + + G QQ Q QQ + Q
Sbjct: 128 AGMGPHQMSRVGT---MQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAG------ 178
Query: 63 GNEAILAYQVGSLPGLMGGGNFASPPGSMQPPQQSRKFFDFAQQHAISQESQNRSQGVEH 122
G G G P G QPPQ + Q + Q
Sbjct: 179 ----------GMNQGQQG------PVGQQQPPQM---GQPGMPGGGGQGQMQQQGQPGGQ 219
Query: 123 QLLNPVHQAYMQYALQAQQKSASVLQSQQQAKLGMLGPASGKDQDMRMG----NLKMQEL 178
Q NP Q +Q Q QQ + QA++G G Q +M + MQ+
Sbjct: 220 QQQNPQMQQQLQNQQQ-QQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQ 278
Query: 179 ISMQSANQAQASSSKNSSEQF----GRGEKQMEQPQQQVSDQKGEPKPPSQQTLGGQGMA 234
Q Q+Q N +Q G Q P Q + QQ + G
Sbjct: 279 PPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQGGQAVQQGVMSAGQQ 338
Query: 235 ANIIRPMQAAQHQQSIQNAAGNQLAMAAQLQAWALERNIDLSQPAN-ASLIAQLIPIMQS 293
M+ + Q Q A + N + Q +L I Q
Sbjct: 339 QLKQ--MKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQMVALGYLNIQGNQG 396
Query: 294 RIVANHKANESNMGAPSSPVPVSKQQVT-------SPTIAGENSPHANSSSDVSGQSGSA 346
+ AN + G SSP PV + Q P++ P + VSG +
Sbjct: 397 GLGAN-PMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIPS 455
Query: 347 KARPTVSPSP 356
SPSP
Sbjct: 456 PPALMPSPSP 465
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 43/187 (22%), Positives = 66/187 (35%), Gaps = 19/187 (10%)
Query: 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIV 1057
LR YQ L ++ + G++ G GKTV IA L L++V
Sbjct: 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KRSTLVLV 87
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYE--FIMYD 1114
P L++ W L K+L D+ E V V T +
Sbjct: 88 PTKELLDQWAEALKKFL---------LLNDEIGIYGGGEKELEPAKVTVATVQTLARRQL 138
Query: 1115 RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNL 1174
+ ++ II DE + +L RL LT TP + D + L +L
Sbjct: 139 LDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAY-PRLGLTATPEREDGGRIGDLFDL 197
Query: 1175 LLPEVFD 1181
+ P V++
Sbjct: 198 IGPIVYE 204
|
Length = 442 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 32/146 (21%), Positives = 55/146 (37%), Gaps = 21/146 (14%)
Query: 1029 GLGKTVQVMALIAYLMEFKGNYGPH--LIIVPNAVLVN-----WKSELHKWLPSVSCIYY 1081
G GKT+ L+ L G L++ P L K V+ +
Sbjct: 24 GSGKTL--AFLLPILQALLPKKGGPQALVLAPTRELAEQIYEELKKLFKILGLRVALLTG 81
Query: 1082 VGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDW----KYIIIDEAQRM--K 1135
+ +++R + A ++LV T ++ D + K+ K +++DEA R+
Sbjct: 82 GTSLKEQARKLKKGKA----DILVGTPGRLL-DLLRRGKLKLLKNLKLLVLDEAHRLLDM 136
Query: 1136 DRESVLARDLDRYRCQRR-LLLTGTP 1160
L L R R+ LLL+ T
Sbjct: 137 GFGDDLEEILSRLPPDRQILLLSATL 162
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-07
Identities = 48/263 (18%), Positives = 73/263 (27%), Gaps = 28/263 (10%)
Query: 3 SGGGPSRNRAASTSSAAS--PSSSSSAVSTPHLGFD------SLQQQQQHQQQQQRQPFQ 54
G ++ ST S +S+ P L D + + + Q Q + QP
Sbjct: 87 VGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQP 146
Query: 55 QQILRKPDGNEAILA--YQVGSLPGLMGGGNF----ASPPGSMQPPQQSRKFFDFAQQHA 108
Q +K E + A Q P L PP PQQ + +
Sbjct: 147 QTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPP--EQPPGYP 204
Query: 109 ISQESQNRSQGVEHQLLNPVHQAYMQYALQAQQKSASV-LQSQQ--QAKLGMLGPASGKD 165
+ Q Q L QA Q L Q LQ Q M P
Sbjct: 205 -QPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP 263
Query: 166 QDMRMGNLKMQELISMQSANQAQASSSKNSSEQFGRGEKQMEQPQQQVSDQKGEPKPPSQ 225
Q + Q Q Q + + +QPQ Q+ + +
Sbjct: 264 QQQQ-----QPPQPQAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGP 318
Query: 226 QTLGGQGMAANIIRPMQAAQHQQ 248
Q + + + + A Q+
Sbjct: 319 QF---REQLVQLSQQQREALSQE 338
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|214931 smart00951, QLQ, QLQ is named after the conserved Gln, Leu, Gln motif | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 5e-06
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 474 FTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507
FT QL +L+AQILA++ L +P ELL+AI
Sbjct: 3 FTPAQLELLRAQILAYKYLLARNQPVPPELLQAI 36
|
QLQ is found at the N-terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions. Length = 36 |
| >gnl|CDD|99922 cd04369, Bromodomain, Bromodomain | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 1987 DLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLL 2042
DL I +++ EY + E +DV+ + A + G + +A+K+ LF LL
Sbjct: 44 DLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIYKDAKKLEKLFEKLL 99
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. Length = 99 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 35/177 (19%), Positives = 70/177 (39%), Gaps = 11/177 (6%)
Query: 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385
S K+ + +L+K R G + L+F++ + + + + I G T E+RE+
Sbjct: 266 SERKIAAVRGLLLKHAR-GDKTLIFASDVEHAYEIAKLFL-APGIVEAITGETPKEEREA 323
Query: 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR-IGQK 1444
+ F + L++++ G+++ AD +II P + + Q + R R K
Sbjct: 324 ILERFRTGGIK---VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGK 380
Query: 1445 REVKVIYMEAVVDK-----ISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRN 1496
+ + V D I+ ++ +R G T L + I G+
Sbjct: 381 EDTLALDYSLVPDDLGEEDIARRRRLFLIRKGYTYRLLTADEEGELIPNLILGIKGY 437
|
Length = 442 |
| >gnl|CDD|221124 pfam11496, HDA2-3, Class II histone deacetylase complex subunits 2 and 3 | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.003
Identities = 35/174 (20%), Positives = 62/174 (35%), Gaps = 17/174 (9%)
Query: 1271 VDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF----SDLSKDF--LV 1324
+ K + K + K L + HP L ++ L + L
Sbjct: 35 CETSSSKEDIIKLLEDLTESIKLLFENLSLV---ATHPYLLIDHYMPKSLLLKEPPEHLA 91
Query: 1325 KSCGKLWILDRI--LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382
++ GK +L+ + L+ VL+ S K LD++E L + L Y+R+ G + E
Sbjct: 92 ETSGKFLVLNDLINLLIRSERDLHVLIISRSVKTLDLVEALLLGKGLNYKRLSGESLYE- 150
Query: 1383 RESAIVDFNSHDSDCFIFLLS---IRAAGRGLNLQSA-DTVIIYDPDPNPKNEE 1432
E+ V +I L + + L D +I +DP +
Sbjct: 151 -ENHKVSDKKGSLSLWIHLTTSDGLTNTDSSLLSNYKFDLIISFDPSLDTSLPS 203
|
This family of class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi, The member from S. pombe is referred to as Ccq1. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C-terminus. Length = 279 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2240 | |||
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 100.0 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 100.0 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 100.0 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 100.0 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 100.0 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 100.0 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 100.0 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 100.0 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 100.0 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 100.0 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 100.0 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 100.0 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 100.0 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 100.0 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 100.0 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 100.0 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 100.0 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 100.0 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 100.0 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 100.0 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.97 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.96 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.96 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 99.95 | |
| PTZ00110 | 545 | helicase; Provisional | 99.95 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.95 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.94 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.94 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.94 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.94 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.94 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.94 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.94 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.94 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.94 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.93 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.93 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.92 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.92 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.92 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.91 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.91 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 99.9 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.9 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.89 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.89 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.89 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 99.89 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.89 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.89 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 99.88 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 99.88 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 99.88 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.88 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 99.87 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.87 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 99.87 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 99.86 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 99.86 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 99.86 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.86 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.86 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 99.85 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.85 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 99.85 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.85 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 99.84 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 99.84 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.83 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 99.83 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.83 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.83 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 99.83 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.82 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.82 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.82 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.81 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.8 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 99.8 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 99.79 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.78 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.78 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.78 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.78 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 99.78 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 99.78 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 99.77 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.77 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.77 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 99.76 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.76 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 99.76 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.75 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.75 | |
| smart00297 | 107 | BROMO bromo domain. | 99.75 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.75 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.75 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 99.75 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 99.74 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 99.74 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 99.74 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 99.74 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 99.74 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 99.74 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.73 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 99.73 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 99.73 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 99.72 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 99.72 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.71 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.7 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 99.69 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 99.69 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.69 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 99.69 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 99.68 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 99.68 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.68 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.68 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.68 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 99.67 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 99.67 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 99.66 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.65 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.65 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.65 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.64 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.64 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 99.64 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.63 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.63 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.63 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.63 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.62 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 99.61 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.59 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.59 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.58 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 99.57 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.54 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.54 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.54 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.53 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 99.52 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.52 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.5 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.49 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.49 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.48 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.46 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.46 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.44 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.44 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.44 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.43 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.43 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.39 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.38 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.33 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.33 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.3 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.29 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.27 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.24 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.19 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.14 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 99.13 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.1 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.07 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.06 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.06 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.03 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.03 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.03 | |
| cd05517 | 103 | Bromo_polybromo_II Bromodomain, polybromo repeat I | 99.02 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 99.01 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 99.0 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 98.98 | |
| cd05525 | 106 | Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 | 98.94 | |
| COG5076 | 371 | Transcription factor involved in chromatin remodel | 98.9 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 98.87 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 98.87 | |
| cd05516 | 107 | Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s | 98.85 | |
| cd05520 | 103 | Bromo_polybromo_III Bromodomain, polybromo repeat | 98.84 | |
| PF11496 | 297 | HDA2-3: Class II histone deacetylase complex subun | 98.83 | |
| cd05515 | 105 | Bromo_polybromo_V Bromodomain, polybromo repeat V. | 98.8 | |
| cd05518 | 103 | Bromo_polybromo_IV Bromodomain, polybromo repeat I | 98.78 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.75 | |
| cd05526 | 110 | Bromo_polybromo_VI Bromodomain, polybromo repeat V | 98.74 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 98.74 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.71 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 98.7 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.7 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 98.69 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.67 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.66 | |
| cd05519 | 103 | Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci | 98.65 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.65 | |
| cd05524 | 113 | Bromo_polybromo_I Bromodomain, polybromo repeat I. | 98.64 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.61 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 98.58 | |
| cd05522 | 104 | Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l | 98.54 | |
| cd05521 | 106 | Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik | 98.52 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 98.49 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.47 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 98.37 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 98.31 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.29 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 98.28 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 98.27 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 98.25 | |
| cd05491 | 119 | Bromo_TBP7_like Bromodomain; TBP7_like subfamily, | 98.21 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 98.13 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.07 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 98.05 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 98.05 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 97.97 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 97.97 | |
| cd05508 | 99 | Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC | 97.94 | |
| cd05505 | 97 | Bromo_WSTF_like Bromodomain; Williams syndrome tra | 97.94 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 97.92 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 97.9 | |
| cd05496 | 119 | Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub | 97.88 | |
| cd05497 | 107 | Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily | 97.86 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.85 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 97.84 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 97.82 | |
| cd05512 | 98 | Bromo_brd1_like Bromodomain; brd1_like subfamily. | 97.81 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 97.78 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.76 | |
| cd05503 | 97 | Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s | 97.76 | |
| cd05507 | 104 | Bromo_brd8_like Bromodomain, brd8_like subgroup. I | 97.74 | |
| cd05499 | 102 | Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam | 97.7 | |
| cd05513 | 98 | Bromo_brd7_like Bromodomain, brd7_like subgroup. T | 97.69 | |
| cd05528 | 112 | Bromo_AAA Bromodomain; sub-family co-occurring wit | 97.67 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 97.65 | |
| cd05504 | 115 | Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li | 97.65 | |
| cd05509 | 101 | Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. | 97.64 | |
| smart00297 | 107 | BROMO bromo domain. | 97.64 | |
| cd05510 | 112 | Bromo_SPT7_like Bromodomain; SPT7_like subfamily. | 97.63 | |
| cd05495 | 108 | Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb | 97.62 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 97.62 | |
| cd05498 | 102 | Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil | 97.61 | |
| cd05511 | 112 | Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum | 97.57 | |
| KOG0955 | 1051 | consensus PHD finger protein BR140/LIN-49 [General | 97.52 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 97.47 | |
| cd05502 | 109 | Bromo_tif1_like Bromodomain; tif1_like subfamily. | 97.41 | |
| cd05506 | 99 | Bromo_plant1 Bromodomain, uncharacterized subfamil | 97.38 | |
| KOG1827 | 629 | consensus Chromatin remodeling complex RSC, subuni | 97.38 | |
| cd05529 | 128 | Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like | 97.37 | |
| PF00439 | 84 | Bromodomain: Bromodomain; InterPro: IPR001487 Brom | 97.36 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 97.29 | |
| cd04369 | 99 | Bromodomain Bromodomain. Bromodomains are found in | 97.28 | |
| PF08880 | 37 | QLQ: QLQ; InterPro: IPR014978 QLQ is named after t | 97.25 | |
| cd05500 | 103 | Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami | 97.24 | |
| cd05492 | 109 | Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | 97.18 | |
| KOG1472 | 720 | consensus Histone acetyltransferase SAGA/ADA, cata | 97.11 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.11 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.0 | |
| cd05501 | 102 | Bromo_SP100C_like Bromodomain, SP100C_like subfami | 96.91 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.86 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 96.6 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.57 | |
| PF07529 | 73 | HSA: HSA; InterPro: IPR006562 This domain of unkno | 96.55 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 96.33 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.31 | |
| smart00573 | 73 | HSA domain in helicases and associated with SANT d | 96.31 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 96.29 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.18 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 96.04 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 96.0 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 96.0 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 95.99 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 95.92 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 95.67 | |
| KOG1828 | 418 | consensus IRF-2-binding protein CELTIX-1, contains | 95.66 | |
| KOG0008 | 1563 | consensus Transcription initiation factor TFIID, s | 95.6 | |
| KOG1474 | 640 | consensus Transcription initiation factor TFIID, s | 95.48 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 95.39 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 95.34 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 95.23 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 94.96 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 94.95 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 94.76 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 94.69 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 94.48 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 94.37 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 94.14 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 94.04 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 93.98 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 93.94 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 93.86 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 93.84 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 93.47 | |
| cd05494 | 114 | Bromodomain_1 Bromodomain; uncharacterized subfami | 93.4 | |
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 93.27 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 93.24 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 93.15 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 93.08 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 93.01 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 92.55 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 92.08 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 92.06 | |
| PRK06526 | 254 | transposase; Provisional | 91.91 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 91.85 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 91.84 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 91.71 | |
| PRK08181 | 269 | transposase; Validated | 91.58 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 91.51 | |
| cd05493 | 131 | Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL- | 91.45 | |
| PF13892 | 139 | DBINO: DNA-binding domain | 91.35 | |
| KOG1245 | 1404 | consensus Chromatin remodeling complex WSTF-ISWI, | 91.32 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 91.24 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 90.63 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 90.23 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 90.22 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 90.14 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 89.81 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 89.76 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 89.67 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 89.58 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 89.36 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 89.26 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 89.24 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 89.08 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 88.88 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 88.72 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 88.69 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 88.63 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 88.59 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 88.59 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 88.41 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 88.36 | |
| PF13173 | 128 | AAA_14: AAA domain | 88.32 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 88.19 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 88.15 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 87.94 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 87.85 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 87.82 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 87.74 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 87.57 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 87.53 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 87.39 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 87.31 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 87.08 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 87.0 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 86.67 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 86.57 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 86.35 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 86.31 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 86.3 | |
| PRK08727 | 233 | hypothetical protein; Validated | 86.29 | |
| PRK08116 | 268 | hypothetical protein; Validated | 85.8 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 85.67 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 85.35 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 85.23 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 85.11 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 85.06 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 85.0 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 84.97 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 84.96 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 84.86 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 84.77 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 84.68 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 84.67 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 84.66 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 84.26 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 84.22 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 83.76 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 83.63 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 83.51 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 83.43 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 83.15 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 83.15 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 83.14 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 82.91 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 82.91 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 82.81 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 82.8 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 82.76 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 82.55 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 82.51 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 82.5 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 82.24 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 82.13 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 81.91 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 81.86 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 81.28 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 81.04 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 80.95 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 80.78 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 80.66 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 80.64 | |
| PF07015 | 231 | VirC1: VirC1 protein; InterPro: IPR009744 This fam | 80.63 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 80.59 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 80.53 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 80.19 |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-161 Score=1494.68 Aligned_cols=960 Identities=39% Similarity=0.595 Sum_probs=800.3
Q ss_pred cChHHHHHHHHHHHHHH--HHHHHHHhhhhhhhhhhhhccCChhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH----H
Q 000099 703 YDVKDLLSEEGLEVLQK--KRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQE----I 776 (2240)
Q Consensus 703 ~d~~~~~~~~~~~~~~~--~R~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ie~k~l~ll~~q~~lr~~~~~~~~~----~ 776 (2240)
||+..+...++++++.+ .+.++++++++.+. ++++++|.||+++|||+++|++||..++.|+.. .
T Consensus 128 l~~~~~~~~q~~~i~~~~~~~lq~~q~~~~~~~---------~~~~~~a~~e~~~lrl~~~q~qlr~~~~~~~~~~~~~~ 198 (1157)
T KOG0386|consen 128 LDQQNINPMQQARIQFRMQAQLQELQQLARSLM---------GELKSSAVGEDQALRLLMLQMQLRNPVSQPLRRDSSSE 198 (1157)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHhhhcch---------HHHhhhhhhhhHHHHhHHHHHHHhhhhhcccccccccc
Confidence 99999999999987776 48999999988652 689999999999999999999999999998643 3
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 000099 777 MAMPDRQYRKFVRLCERQRVELMRQVQTSQKAM-----REK---QLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHER 848 (2240)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----r~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~ 848 (2240)
++++...|++-+++..+. .+++++++++||-+ |.+ ++.+++.|.++|.+.|+....+..+++++|..||.+
T Consensus 199 ~~~n~~~~~R~~~q~~~~-~r~te~Le~qqr~e~erk~r~~~~~~l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~ 277 (1157)
T KOG0386|consen 199 TALNPKAFKRGKRQTLSE-ARLTEKLEKQQRLETERKRRVKHGQFLPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHAN 277 (1157)
T ss_pred cccCHHHHhhhhhhhHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667888888877665 55666665554432 333 378999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHhhhchHHHHHHHHHHhhcCCCcchHHHHHHHHHhHhhhHHHHHHhhhhhHHhhhhHHHHHH
Q 000099 849 ILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEA 928 (2240)
Q Consensus 849 ~~~~~~kr~~~~~~~rl~~lk~~d~e~y~~ll~~~k~~~~~d~~~r~~~l~~LL~qte~~l~~l~~~v~~~k~~q~~~~~ 928 (2240)
++++++|+.++.+|+||.+||.||+|+|++|++++| |. ||++||+||++|+.+|+.+|+.++.. .
T Consensus 278 ~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~kl~dq~K-------d~---Rl~~LL~qt~~yl~sL~s~Vk~qk~~--~--- 342 (1157)
T KOG0386|consen 278 QERERERRIDRIEKERASALKHNDEEGYRKLQDQKK-------DN---RLSQLLSQTDSYLPSLSSVVKGQKSE--N--- 342 (1157)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhcc-------cc---HHHHhhhhhhHHHHHHHHHHHHhhcc--c---
Confidence 999999999999999999999999999999999986 34 47899999999999999988766530 0
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHhhhhhHHhhhhhcccCCCCCCchhhhhhhhHHhhhhhhccCCCccCCCCCcHHHHH
Q 000099 929 ANAAAAAARLQGL-SEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIV 1007 (2240)
Q Consensus 929 ~~~~~~~~r~~gl-~~ee~~~~~~~~~ee~~i~~~f~e~~~p~~~s~~~kyy~lah~i~e~v~~qPs~L~ggtLRPYQle 1007 (2240)
.+. +..++......+..+. + ....+..+||.++|.+.|.|.+||+++.||+|++||+.
T Consensus 343 ----------~~~~~~~d~~~i~~~ak~~~---------~--d~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~YQl~ 401 (1157)
T KOG0386|consen 343 ----------PDANSASDISGISGSAKADV---------D--DHAESNGSYYSTAHPIKENVAKQPSSLQGGELKEYQLH 401 (1157)
T ss_pred ----------cccchhhhhhhhhhhhcchh---------h--hhhhcchhHHHhcchhhhccccCcchhcCCCCchhhhh
Confidence 000 0000000000000000 0 02234578999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhh
Q 000099 1008 GLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQ 1087 (2240)
Q Consensus 1008 GLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~Gskde 1087 (2240)
||+||+++|+|++|||||||||||||||+|++|+||++.++..||+|||||+++|.||..||.+|+|++..++|.|+++.
T Consensus 402 GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~ 481 (1157)
T KOG0386|consen 402 GLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQ 481 (1157)
T ss_pred hhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhh-ccccceEEEeecCCCCCCHH
Q 000099 1088 RSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRCQRRLLLTGTPLQNDLK 1166 (2240)
Q Consensus 1088 Rk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk-~Lks~~RLLLTGTPLQNnL~ 1166 (2240)
|..+..+ +..++|+|++|||+++++++..|.+++|.||||||+|||||..|+++..|. .|.+.+||||||||+||++.
T Consensus 482 R~~l~~q-ir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~Lp 560 (1157)
T KOG0386|consen 482 RSGLTKQ-QRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLP 560 (1157)
T ss_pred HhhHHHH-HhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccH
Confidence 9888765 556999999999999999999999999999999999999999999999999 78999999999999999999
Q ss_pred HHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEE
Q 000099 1167 ELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSI 1246 (2240)
Q Consensus 1167 ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~ 1246 (2240)
|||+|||||+|.||+++..|.+||+.||+++| +..++++++.+++|+|||+||+||+|||+|++|+.+||+|++.
T Consensus 561 ELWaLLNFlLP~IFnS~~~FeqWFN~PFantG-----ek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~ 635 (1157)
T KOG0386|consen 561 ELWALLNFLLPNIFNSCKAFEQWFNQPFANTG-----EKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVED 635 (1157)
T ss_pred HHHHHHHHhccchhhhHhHHHHHhhhhhhhcC-----CcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhH
Confidence 99999999999999999999999999999997 3456888999999999999999999999999999999999999
Q ss_pred EEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC----Cccccchhh
Q 000099 1247 VLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP----YFSDLSKDF 1322 (2240)
Q Consensus 1247 vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p----~~~~ls~d~ 1322 (2240)
+++|.||+.|+.+|.++.+.+.+.++. ....+.++.|+|.+|+|||||||||+|.. .......+.
T Consensus 636 viKC~mSalQq~lY~~m~~~g~l~~d~-----------~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~d 704 (1157)
T KOG0386|consen 636 VIKCDMSALQQSLYKQMQNKGQLLKDT-----------AKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKD 704 (1157)
T ss_pred hhheehhhhhHhhhHHHHhCCCCCcCc-----------hhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChhH
Confidence 999999999999999999988877665 12234678999999999999999999843 233334468
Q ss_pred HhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEE
Q 000099 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402 (2240)
Q Consensus 1323 LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLL 1402 (2240)
+++.||||++|++||++|+++|||||+||+||.++++|++||..++++|+|+||+|+.++|..+++.||.|+++||+||+
T Consensus 705 L~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fll 784 (1157)
T KOG0386|consen 705 LVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLL 784 (1157)
T ss_pred HHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcc
Q 000099 1403 SIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAG 1482 (2240)
Q Consensus 1403 STrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~g 1482 (2240)
||+|||+|||||+|||||+||++|||+.+.||.+|+|||||+++|+|+++++|
T Consensus 785 stragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv--------------------------- 837 (1157)
T KOG0386|consen 785 STRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITV--------------------------- 837 (1157)
T ss_pred eecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehh---------------------------
Confidence 99999999999999999999999999999999999999999999999999885
Q ss_pred cccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHHHHHHHHHHHhhhhhhhccccCCCCHHHHHHHHhcCHHHH
Q 000099 1483 KDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEV 1562 (2240)
Q Consensus 1483 Kdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eERr~~Le~LLe~ee~~~e~~~~v~~~eeLN~~lARseeE~ 1562 (2240)
++|||.|+++ +.+|++++++||+||+||+++++++|+++|+.+++.++...+ .+++++++||+++||+++|+
T Consensus 838 -----~sveE~il~~-a~~Kl~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~--~~v~~~~~ln~~larseeE~ 909 (1157)
T KOG0386|consen 838 -----NSVEEKILAE-AFYKLDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEE--EEVPDDEVLNSMLARSEEEF 909 (1157)
T ss_pred -----hHHHHHHHHH-HHHhcCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCcccc--ccCCcHHHHHHHHhcchHHH
Confidence 7999999985 589999999999999999999999999999999998765433 78999999999999999999
Q ss_pred HHHHhhhhhhCcch-------hhhccccchHHHhhchHHHHHHHhhhcCCCCcccccccccccCccchhhhhhcCCCCCC
Q 000099 1563 ELFDQMDEEFGWIE-------EMTRYDQVPKWLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKK 1635 (2240)
Q Consensus 1563 elf~~mD~er~~~~-------~l~~~~evP~~lr~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~erkr~~~~~k 1635 (2240)
++|.+||.+|.|.+ +++.+.++|+|+...+.+++..-+. ... .....||...||
T Consensus 910 ~~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~i~~~~~~~~~~~~~----~~~---------------~~~~~rg~r~Rk 970 (1157)
T KOG0386|consen 910 ELFHKMDEERRATENQQEKKPRLVEEAELPADIYKRDQGVERLSEE----EEE---------------EKILGRGRRARK 970 (1157)
T ss_pred HHHHHhhHHHHhhhhhccccchhhhhhhcHHHHHhcchhhhhhhhh----hhh---------------hccccccccccc
Confidence 99999999997743 6788999999998776665542210 000 011235555566
Q ss_pred CCCCccccccccccccccccccCCCCCc--cccccCCCccccccCCCCCCCCCCCCCCcCCCCcccCCCccCcccccccc
Q 000099 1636 YPNYKEVDDEIGEYSEASSDERNGYPVQ--EEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRN 1713 (2240)
Q Consensus 1636 ~~~~k~~~~~~~~~~e~~~~~~~~~~~~--~~~g~~~~~ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 1713 (2240)
+-.|+. ...+..+-++.|+..+..... ...|...-..|++....... ...+-- +..+.. ..
T Consensus 971 ev~y~d-~~te~q~~k~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~---~~~~~~-i~ 1033 (1157)
T KOG0386|consen 971 EVVYSD-RLTEMQWLKENESVNKEDSEEEERRRGRKKSSLDTRPLSQKKR------------KLRPRS---PKQALK-IA 1033 (1157)
T ss_pred eeeccc-ccchhhhhhhccccccccchhhhhccCCCccccccccchhhcc------------cccCCC---hHHHHH-HH
Confidence 644441 111222222222211110000 00111111112111110000 111111 122233 22
Q ss_pred chhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------
Q 000099 1714 NHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ---------- 1782 (2240)
Q Consensus 1714 ~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~---------- 1782 (2240)
..+.... +++||.+++.| ++||++.|||||.+|++|+++.+ |...|+.+.|.++.++.+||.+
T Consensus 1034 ~~~~~~~-----~~~~r~~~~~~~~~~s~k~~~d~~~~i~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~na~~~~~ 1107 (1157)
T KOG0386|consen 1034 STSIKYK-----DSAGRELSEVFLKLPSRKEYPDYYEIIKKPVAIDK-IKKRIENHKYNSLKELEKDFMLLFNNARTYNE 1107 (1157)
T ss_pred HHHHhcc-----cccccccchhcccCcccccccchHHHhcchhhHHH-HhhhccccccchHHHHHHHHHhhcchhhhhcc
Confidence 3333333 55899999999 99999999999999999999999 9999999999999999999998
Q ss_pred CCCccccCCcccccccccccccccc
Q 000099 1783 SGSWTHDRDEGEDEQVLQPKIKRKR 1807 (2240)
Q Consensus 1783 ~~Sw~~~~~~~~d~~~~~~~~~rkr 1807 (2240)
.|||++ +|+.+++.+..-++
T Consensus 1108 egs~~y-----~d~~~l~~~~~~~~ 1127 (1157)
T KOG0386|consen 1108 EGSRVY-----EDAIVLQSVFKSAR 1127 (1157)
T ss_pred CCceec-----hhHHHHHHHHhhhH
Confidence 899999 99999995544443
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-107 Score=994.34 Aligned_cols=511 Identities=43% Similarity=0.717 Sum_probs=451.5
Q ss_pred hhccCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000099 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (2240)
....+|..+.+|+||+||++||+||+++|.|+.|||||||||||||+|+|+++.||...++..||+|||||.|++.||.+
T Consensus 155 ~~~~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~ 234 (971)
T KOG0385|consen 155 RFEDSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMN 234 (971)
T ss_pred cccCCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHH
Confidence 34458999998999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhc
Q 000099 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (2240)
Q Consensus 1068 Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~ 1147 (2240)
||.+|+|++.+++|+|.+++|..+.......+.|+||||||++++++.+.|.++.|.||||||||||||..|++++.|+.
T Consensus 235 Ef~rf~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~ 314 (971)
T KOG0385|consen 235 EFKRFTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILRE 314 (971)
T ss_pred HHHHhCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHH
Confidence 99999999999999999999988877777778999999999999999999999999999999999999999999999999
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
|.+.+||||||||+||||.|||+|||||+|++|++.+.|..||..... +.....+.+||.+|+||
T Consensus 315 f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~---------------~~~~e~v~~Lh~vL~pF 379 (971)
T KOG0385|consen 315 FKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC---------------EGDQELVSRLHKVLRPF 379 (971)
T ss_pred hcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc---------------ccCHHHHHHHHhhhhHH
Confidence 999999999999999999999999999999999999999999975311 01112678999999999
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
+|||+|.+|++.||++.|.+++|.||..|+..|+.++......+..... ..-..|+|++|+|||||||
T Consensus 380 lLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~------------~~k~kL~NI~mQLRKccnH 447 (971)
T KOG0385|consen 380 LLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGK------------GEKTKLQNIMMQLRKCCNH 447 (971)
T ss_pred HHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccccc------------chhhHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999987654332221110 0235799999999999999
Q ss_pred CCCCCCCc---cccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH
Q 000099 1308 PLLNYPYF---SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1308 P~L~~p~~---~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe 1384 (2240)
||||.... ...+.+.++..|||+.+|+++|++|.+.||||||||||+.++|||++||.+++|.||||||+|+.++|.
T Consensus 448 PYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~ 527 (971)
T KOG0385|consen 448 PYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEERE 527 (971)
T ss_pred ccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHH
Confidence 99987532 234567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhh
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 1464 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~ 1464 (2240)
..|+.||.+++..|||||||+|||+||||++|||||+||+||||+.++||++|||||||+|+|.||+|++
T Consensus 528 ~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLit---------- 597 (971)
T KOG0385|consen 528 DAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLIT---------- 597 (971)
T ss_pred HHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEec----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccC-ccCcHHHHHHHHHHHHhhhhhh-hccc
Q 000099 1465 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFD-QRTTHEERRMTLETLLHDEERY-QETV 1542 (2240)
Q Consensus 1465 eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD-~kst~eERr~~Le~LLe~ee~~-~e~~ 1542 (2240)
.++|||+|++++ ..|+.++..||+.|... +++.. .-...+..++.-+... .+..
T Consensus 598 ----------------------entVEe~IveRA-~~KL~Ld~~VIq~g~l~~~~~~~-~~k~~~l~~~r~g~~~~f~~~ 653 (971)
T KOG0385|consen 598 ----------------------ENTVEEKIVERA-AAKLRLDKLVIQQGRLEEQKSNG-LGKDELLNLLRFGADPVFESK 653 (971)
T ss_pred ----------------------cchHHHHHHHHH-HHHhchhhhhhccCchhhhhccc-cchHHHHHHHHcCchhhhhhc
Confidence 379999999985 67999999999999433 33322 2233344555433221 2222
Q ss_pred cCCCCHHHHHHHHhcCHH
Q 000099 1543 HDVPSLQEVNRMIARSED 1560 (2240)
Q Consensus 1543 ~~v~~~eeLN~~lARsee 1560 (2240)
....++ +|..++.|+++
T Consensus 654 es~~~d-Did~il~~~e~ 670 (971)
T KOG0385|consen 654 ESTISD-DIDRILERGEE 670 (971)
T ss_pred ccccch-hHHHHHHhhhh
Confidence 223333 89999988874
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-98 Score=950.57 Aligned_cols=508 Identities=40% Similarity=0.668 Sum_probs=445.0
Q ss_pred hhhccCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 987 ERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 987 e~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
.++..||.++.|.+||+||++||+||+..|.++.|||||||||||||+|+|++|.+|+......||||||||.+++.+|.
T Consensus 357 ~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~ 436 (1373)
T KOG0384|consen 357 RKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWE 436 (1373)
T ss_pred HHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHH
Confidence 45678999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecchhhHhHHHHHHHhh------cCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhH
Q 000099 1067 SELHKWLPSVSCIYYVGAKDQRSRLFSQEVAA------LKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (2240)
Q Consensus 1067 ~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~------~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (2240)
+||..|+ .+++++|+|....|.-+...++.. .+|+++||||+++.+|...|..++|.+++||||||+||..|+
T Consensus 437 ~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 437 REFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred HHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHH
Confidence 9999999 999999999998887765555432 369999999999999999999999999999999999999999
Q ss_pred HHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000099 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (2240)
Q Consensus 1141 lskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RL 1220 (2240)
++..|..|...+|||+||||+||++.|||+||+||+|+-|.++..|...|.. +....+..|
T Consensus 516 l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~-------------------~~e~~~~~L 576 (1373)
T KOG0384|consen 516 LYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE-------------------ETEEQVRKL 576 (1373)
T ss_pred HHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-------------------hhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987621 112247899
Q ss_pred HHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000099 1221 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1300 (2240)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmq 1300 (2240)
|.+|+||||||+|+||++.||+|.|.++.|.||+.|+.+|++|+..+...+.. +.. ....+|+|++|.
T Consensus 577 ~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtK---------G~~---g~~~~lLNimmE 644 (1373)
T KOG0384|consen 577 QQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTK---------GAK---GSTPSLLNIMME 644 (1373)
T ss_pred HHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhc---------cCC---CCCchHHHHHHH
Confidence 99999999999999999999999999999999999999999998764332221 110 112579999999
Q ss_pred HHHHcCCCCCCCCCcccc-----------chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCc
Q 000099 1301 LRKTCNHPLLNYPYFSDL-----------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369 (2240)
Q Consensus 1301 LRKICNHP~L~~p~~~~l-----------s~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGi 1369 (2240)
|+||||||||+.+..+.+ ....++.+|||+.+|++||.+|++.||||||||||+.++|||++||..++|
T Consensus 645 LkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~y 724 (1373)
T KOG0384|consen 645 LKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGY 724 (1373)
T ss_pred HHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCC
Confidence 999999999987654322 234478999999999999999999999999999999999999999999999
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEE
Q 000099 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (2240)
Q Consensus 1370 ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~V 1449 (2240)
+|.||||++..+-|+.+|+.||+++++-|||||||+|||+||||.+||||||||+||||+.++||+.|||||||++.|.|
T Consensus 725 pfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnV 804 (1373)
T KOG0384|consen 725 PFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNV 804 (1373)
T ss_pred cceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcH--HHHHHH
Q 000099 1450 IYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH--EERRMT 1527 (2240)
Q Consensus 1450 yrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~--eERr~~ 1527 (2240)
|||+| .+|||+-|++++ ..|+-++..||+.+.++...+. .-....
T Consensus 805 YRLVT--------------------------------k~TvEeEilERA-k~KmvLD~aVIQ~m~t~~~~s~~~~f~K~E 851 (1373)
T KOG0384|consen 805 YRLVT--------------------------------KNTVEEEILERA-KLKMVLDHAVIQRMDTKGKTSKSNPFSKEE 851 (1373)
T ss_pred EEEec--------------------------------CCchHHHHHHHH-HHHhhhHHHHHHhhccccccCCCCCCCHHH
Confidence 99987 489999999985 8899999999999877433221 222456
Q ss_pred HHHHHhhhhh--hhc--cccCCCCHHHHHHHHhcCH
Q 000099 1528 LETLLHDEER--YQE--TVHDVPSLQEVNRMIARSE 1559 (2240)
Q Consensus 1528 Le~LLe~ee~--~~e--~~~~v~~~eeLN~~lARse 1559 (2240)
|.+||.-++. .++ .....+...+|.+||.|.+
T Consensus 852 LsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae 887 (1373)
T KOG0384|consen 852 LSAILKFGAYELFKEEENEESKFCEMDIDEILERAE 887 (1373)
T ss_pred HHHHHHhchHHhhhccccccccccccCHHHHHhhcc
Confidence 7777764221 122 1222344456777776643
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-92 Score=846.29 Aligned_cols=465 Identities=40% Similarity=0.732 Sum_probs=414.4
Q ss_pred hhhccCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 987 ERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 987 e~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
+.-..||.+|.+ +|++||++||+||+.+|..+.|||||||||||||+|+|+++++|.+.+..+||||||+|.++|.||.
T Consensus 555 t~tV~qPkil~c-tLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWa 633 (1185)
T KOG0388|consen 555 TRTVPQPKILKC-TLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWA 633 (1185)
T ss_pred eeeccCchhhhh-hhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHH
Confidence 344689999964 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCeEEEEecchhhHhHHHHHH------HhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhH
Q 000099 1067 SELHKWLPSVSCIYYVGAKDQRSRLFSQE------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (2240)
Q Consensus 1067 ~Ef~Kw~PslkVvvy~GskdeRk~l~~qe------i~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (2240)
.||.+|+|.++++.|.|+..+|+.+.... -....|+|+||||+.+..|...|.+++|.|+|+|||+.||...|.
T Consensus 634 qEisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~ 713 (1185)
T KOG0388|consen 634 QEISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSS 713 (1185)
T ss_pred HHHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhh
Confidence 99999999999999999999987664321 135679999999999999999999999999999999999999999
Q ss_pred HHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000099 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (2240)
Q Consensus 1141 lskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RL 1220 (2240)
+|+.|..|+|+.|||||||||||+..|||+||+|++|.+|++...|.+||.+.++....... .++ ...+.||
T Consensus 714 RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~----tln----eqqL~RL 785 (1185)
T KOG0388|consen 714 RWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNT----TLN----EQQLQRL 785 (1185)
T ss_pred HHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcC----CcC----HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988776422211 111 1247899
Q ss_pred HHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHH
Q 000099 1221 HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCME 1300 (2240)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmq 1300 (2240)
|.+|.||||||.|+||..+|..|+++.|+|+||..|..+|+.+..... ...+.+++|+
T Consensus 786 H~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS----------------------~~E~~~~vmQ 843 (1185)
T KOG0388|consen 786 HAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSIS----------------------SMEMENLVMQ 843 (1185)
T ss_pred HHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhh----------------------HHHHHHHHHH
Confidence 999999999999999999999999999999999999999998865311 1223358999
Q ss_pred HHHHcCCCCCCCCC------------------------------------------------------------------
Q 000099 1301 LRKTCNHPLLNYPY------------------------------------------------------------------ 1314 (2240)
Q Consensus 1301 LRKICNHP~L~~p~------------------------------------------------------------------ 1314 (2240)
||++||||.||...
T Consensus 844 lrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~ 923 (1185)
T KOG0388|consen 844 LRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNA 923 (1185)
T ss_pred HHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcch
Confidence 99999999763100
Q ss_pred -c---------ccc------------------------------------------------------------------
Q 000099 1315 -F---------SDL------------------------------------------------------------------ 1318 (2240)
Q Consensus 1315 -~---------~~l------------------------------------------------------------------ 1318 (2240)
+ ..+
T Consensus 924 w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId 1003 (1185)
T KOG0388|consen 924 WYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEID 1003 (1185)
T ss_pred hcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCC
Confidence 0 000
Q ss_pred ---------------chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHH
Q 000099 1319 ---------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1383 (2240)
Q Consensus 1319 ---------------s~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eER 1383 (2240)
..+..+..|||+..|+.+|++|++.|||||+|+|||.|+|+|++||..++|.|+||||+.+..+|
T Consensus 1004 ~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dR 1083 (1185)
T KOG0388|consen 1004 LENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDR 1083 (1185)
T ss_pred ccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHH
Confidence 00112567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhh
Q 000099 1384 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQ 1463 (2240)
Q Consensus 1384 eeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q 1463 (2240)
..++.+|+. +++||||+||+|||+||||++||||||||++|||+.+.||++||||+||+++|+||+|++
T Consensus 1084 rd~vrDwQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~--------- 1152 (1185)
T KOG0388|consen 1084 RDVVRDWQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT--------- 1152 (1185)
T ss_pred HHHHhhccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecc---------
Confidence 999999996 889999999999999999999999999999999999999999999999999999999976
Q ss_pred hhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCc
Q 000099 1464 KEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQ 1517 (2240)
Q Consensus 1464 ~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~ 1517 (2240)
.++|||+|++++ ..|..+-..|+.++.|..
T Consensus 1153 -----------------------rgTvEEk~l~rA-~qK~~vQq~Vm~G~~~qg 1182 (1185)
T KOG0388|consen 1153 -----------------------RGTVEEKVLERA-NQKDEVQQMVMHGNIFQG 1182 (1185)
T ss_pred -----------------------cccHHHHHHHHh-hhHHHHHHHHHcCCcccC
Confidence 379999999975 668888999998888743
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-92 Score=874.09 Aligned_cols=485 Identities=41% Similarity=0.726 Sum_probs=428.8
Q ss_pred cCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 991 ~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
..|++|. |.||+||..||+||+.+|++++|||||||||||||||+|+|+++|...+++|||+|||||++++.||..||+
T Consensus 607 pvPsLLr-GqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElK 685 (1958)
T KOG0391|consen 607 PVPSLLR-GQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELK 685 (1958)
T ss_pred CchHHHH-HHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHh
Confidence 4566665 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcccc
Q 000099 1071 KWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (2240)
Q Consensus 1071 Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks 1150 (2240)
+|||+++++.|+|+..+|+.....+.....|||+||+|..+..|...|...+|.|+||||+|+|||..+.+|++|..|++
T Consensus 686 RwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfns 765 (1958)
T KOG0391|consen 686 RWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNS 765 (1958)
T ss_pred hhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhccch
Confidence 99999999999999999988777777788899999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.+||||||||++|++.|||+|++||+|.+|.+.+.|..||..|+....... .+.....+.|||++|+||+||
T Consensus 766 qrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgs--------qeyn~klV~RLHkVlrPfiLR 837 (1958)
T KOG0391|consen 766 QRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGS--------QEYNHKLVIRLHKVLRPFILR 837 (1958)
T ss_pred hheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccc--------hhhchHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999986542211 122244688999999999999
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
|+|.||+++||.|.|++|+|.||..|+.+|+.+..... .+..+. .+.+-++.|++|+||||||||.|
T Consensus 838 RlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~-------TKetLk------SGhfmsVlnilmqLrKvCNHPnL 904 (1958)
T KOG0391|consen 838 RLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPG-------TKETLK------SGHFMSVLNILMQLRKVCNHPNL 904 (1958)
T ss_pred HHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccc-------hhhHhh------cCchhHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999997754321 111111 23467889999999999999966
Q ss_pred CCCCc---------------------------------------------------------------------------
Q 000099 1311 NYPYF--------------------------------------------------------------------------- 1315 (2240)
Q Consensus 1311 ~~p~~--------------------------------------------------------------------------- 1315 (2240)
|.+..
T Consensus 905 fEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~p 984 (1958)
T KOG0391|consen 905 FEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIP 984 (1958)
T ss_pred CCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCc
Confidence 21000
Q ss_pred -------------------cc-----------------------------------------------------------
Q 000099 1316 -------------------SD----------------------------------------------------------- 1317 (2240)
Q Consensus 1316 -------------------~~----------------------------------------------------------- 1317 (2240)
..
T Consensus 985 t~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~s 1064 (1958)
T KOG0391|consen 985 TFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVS 1064 (1958)
T ss_pred cccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecc
Confidence 00
Q ss_pred ----------------c---------------------------------------------------------------
Q 000099 1318 ----------------L--------------------------------------------------------------- 1318 (2240)
Q Consensus 1318 ----------------l--------------------------------------------------------------- 1318 (2240)
+
T Consensus 1065 v~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~ 1144 (1958)
T KOG0391|consen 1065 VPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYL 1144 (1958)
T ss_pred ccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhh
Confidence 0
Q ss_pred -c-----hh-----------------------------------------------------------------------
Q 000099 1319 -S-----KD----------------------------------------------------------------------- 1321 (2240)
Q Consensus 1319 -s-----~d----------------------------------------------------------------------- 1321 (2240)
. .+
T Consensus 1145 ~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~ 1224 (1958)
T KOG0391|consen 1145 VNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRIL 1224 (1958)
T ss_pred ccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHH
Confidence 0 00
Q ss_pred -----------------------------hHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEE
Q 000099 1322 -----------------------------FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR 1372 (2240)
Q Consensus 1322 -----------------------------~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~ 1372 (2240)
.+--.|||+..|.-+|..|+..|||||||+||+.|+|+|+.||.++|+.|+
T Consensus 1225 ~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~ 1304 (1958)
T KOG0391|consen 1225 RQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYV 1304 (1958)
T ss_pred HHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEE
Confidence 001146899999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1373 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1373 rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
||||+|+.++|+.++++||. |..+|||||||+.||+||||+.||||||||+||||.++.||++|+|||||+++|+||||
T Consensus 1305 RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRL 1383 (1958)
T KOG0391|consen 1305 RLDGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRL 1383 (1958)
T ss_pred EecCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEe
Confidence 99999999999999999997 88999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHHHHHHHHHHH
Q 000099 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLL 1532 (2240)
Q Consensus 1453 vTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eERr~~Le~LL 1532 (2240)
++ ..+||+.|++++ ..|.-+++.+|+.|.| +++--+...+.+|+
T Consensus 1384 IS--------------------------------e~TIEeniLkka-nqKr~L~evaiqggdf---Tt~ff~q~ti~dLF 1427 (1958)
T KOG0391|consen 1384 IS--------------------------------ERTIEENILKKA-NQKRMLDEVAIQGGDF---TTAFFKQRTIRDLF 1427 (1958)
T ss_pred ec--------------------------------cchHHHHHHhhh-hHHHHHHHHhhccCCc---cHHHHhhhhHHHHh
Confidence 76 268999999875 5577889999999999 55656666666777
Q ss_pred hh
Q 000099 1533 HD 1534 (2240)
Q Consensus 1533 e~ 1534 (2240)
+-
T Consensus 1428 d~ 1429 (1958)
T KOG0391|consen 1428 DV 1429 (1958)
T ss_pred cC
Confidence 64
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-87 Score=873.24 Aligned_cols=512 Identities=40% Similarity=0.710 Sum_probs=446.9
Q ss_pred hhccCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000099 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (2240)
.+..+|..+. ++|||||+.||+||+.++.++.|||||||||||||+|+|++|.++....+..+|+|||||.+++.||..
T Consensus 158 ~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~ 236 (1033)
T PLN03142 158 RLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMN 236 (1033)
T ss_pred eeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHH
Confidence 3456898887 699999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhc
Q 000099 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (2240)
Q Consensus 1068 Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~ 1147 (2240)
||.+|+|.+.+++|+|....|..+.........|+||||||+++.++...|..+.|++|||||||++||..+++++++..
T Consensus 237 Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~ 316 (1033)
T PLN03142 237 EIRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRL 316 (1033)
T ss_pred HHHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHH
Confidence 99999999999999999988776655445567899999999999999999999999999999999999999999999999
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
+.+.+||+|||||++|++.|||+||+||.|++|++...|..||...... .....+.+||.+|+||
T Consensus 317 L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~---------------~~~e~i~~L~~~L~pf 381 (1033)
T PLN03142 317 FSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGEN---------------DQQEVVQQLHKVLRPF 381 (1033)
T ss_pred hhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHcccccc---------------chHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999999999999752110 1123577899999999
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
++||+|.+|...||++.+.+++|.||+.|+.+|..+.......+. .. .....+.+++++||+||+|
T Consensus 382 ~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~---------~g-----~~~~~LlnilmqLRk~cnH 447 (1033)
T PLN03142 382 LLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN---------AG-----GERKRLLNIAMQLRKCCNH 447 (1033)
T ss_pred HhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh---------cc-----ccHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988654211111 00 1234678899999999999
Q ss_pred CCCCCCCc---cccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH
Q 000099 1308 PLLNYPYF---SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1308 P~L~~p~~---~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe 1384 (2240)
|+++.... .......++..|+|+.+|+++|..+...|+||||||+|+.++++|+++|..+|+.|++|||+++.++|.
T Consensus 448 P~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq 527 (1033)
T PLN03142 448 PYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRD 527 (1033)
T ss_pred HHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 99975332 223456678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhh
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQK 1464 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~ 1464 (2240)
.+|+.||.+++..+||||||+|||+||||+.||+||+||+||||..++||+||+|||||+++|.||+|++
T Consensus 528 ~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt---------- 597 (1033)
T PLN03142 528 ASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCT---------- 597 (1033)
T ss_pred HHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEe----------
Confidence 9999999888888999999999999999999999999999999999999999999999999999999986
Q ss_pred hhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHHHHHHHHHHHhhhhh-hhcccc
Q 000099 1465 EDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEER-YQETVH 1543 (2240)
Q Consensus 1465 eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eERr~~Le~LLe~ee~-~~e~~~ 1543 (2240)
.+|||+.|+++ +..|+.++..||+.|.+..... .....|.+|+.-... .-....
T Consensus 598 ----------------------~gTIEEkIler-a~~Kl~Ld~~Vi~~g~~~~~~~--~~~~eL~~ll~~ga~~~f~~~~ 652 (1033)
T PLN03142 598 ----------------------EYTIEEKVIER-AYKKLALDALVIQQGRLAEQKT--VNKDELLQMVRYGAEMVFSSKD 652 (1033)
T ss_pred ----------------------CCcHHHHHHHH-HHHHHHHHHHHHhcCccccccc--CCHHHHHHHHHhChHHhhhccC
Confidence 38999999996 5889999999999998764321 113345666653222 112223
Q ss_pred CCCCHHHHHHHHhcCHHHHHH
Q 000099 1544 DVPSLQEVNRMIARSEDEVEL 1564 (2240)
Q Consensus 1544 ~v~~~eeLN~~lARseeE~el 1564 (2240)
...++++|+.+|+|+++....
T Consensus 653 ~~~~~~did~il~~~~~~~~~ 673 (1033)
T PLN03142 653 STITDEDIDRIIAKGEEATAE 673 (1033)
T ss_pred CCCCHHHHHHHHHhcHHHHHH
Confidence 457899999999999876643
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-87 Score=818.42 Aligned_cols=473 Identities=42% Similarity=0.668 Sum_probs=406.5
Q ss_pred hccCCCccC-CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000099 989 VMRQPSMLR-AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 989 v~~qPs~L~-ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (2240)
+..||..|. +.+|++||+.||+||.-+|.++++||||||||||||+|+|++++||.+ .+..||+|||||.|++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq-~g~~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQ-IGNPGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHH-cCCCCCcEEEecchhHHHHHH
Confidence 556888886 569999999999999999999999999999999999999999999997 667999999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHHH-hhcCCcEEEEcHHHHH---HhhhhccccCcceEecccccccCCchhHHHH
Q 000099 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQEV-AALKFNVLVTTYEFIM---YDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (2240)
Q Consensus 1068 Ef~Kw~PslkVvvy~GskdeRk~l~~qei-~~~~fdVVITTYE~L~---kD~s~L~kikWd~VIIDEAHrLKN~~SKlsk 1143 (2240)
||.+|||+++|..|+|+.++|+.+...-. ....|+|+||||..+. .|+.+|...+|+|+|.||||.+||..|.+++
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 99999999999999999999988754322 2348999999999886 4688999999999999999999999999999
Q ss_pred HhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCCh-HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000099 1144 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR-KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (2240)
Q Consensus 1144 aLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~-~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhk 1222 (2240)
.|..+++.+||||||||+||+|.|||+||.|++|.+|.+. ..+...|..--... .+.+...+..+ .|.|...
T Consensus 546 ~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d---~d~e~~~l~qe----rIsrAK~ 618 (941)
T KOG0389|consen 546 HLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSD---GDIENALLSQE----RISRAKT 618 (941)
T ss_pred HhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCcc---chhhHHHHHHH----HHHHHHH
Confidence 9999999999999999999999999999999999999765 56666665321111 11111222222 4788999
Q ss_pred HhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000099 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (2240)
Q Consensus 1223 lLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLR 1302 (2240)
++.||+|||+|.+|++.||+|..++.+|.|+..|+.+|..+......... ....+ .... + .+.+|+||
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~------~~~~n----s~~~-~-~~vlmqlR 686 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLN------EVSKN----SELK-S-GNVLMQLR 686 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcc------ccccc----cccc-c-chHHHHHH
Confidence 99999999999999999999999999999999999999987654311100 01111 0011 1 46899999
Q ss_pred HHcCCCCCCCCCcccc-------------------------------------------------chhhHhhcccHHHHH
Q 000099 1303 KTCNHPLLNYPYFSDL-------------------------------------------------SKDFLVKSCGKLWIL 1333 (2240)
Q Consensus 1303 KICNHP~L~~p~~~~l-------------------------------------------------s~d~LirsSGKLelL 1333 (2240)
+++|||.|+...+.+. -.+..|-.|||+..|
T Consensus 687 K~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L 766 (941)
T KOG0389|consen 687 KAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKL 766 (941)
T ss_pred HHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHH
Confidence 9999999964322110 113357789999999
Q ss_pred HHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCC
Q 000099 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL 1413 (2240)
Q Consensus 1334 drIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNL 1413 (2240)
..||++++..|+|||||+|||.++|||+.+|..+++.|+||||+|...+|+.+|+.||. +.++|||||||+|||.||||
T Consensus 767 ~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINL 845 (941)
T KOG0389|consen 767 KELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINL 845 (941)
T ss_pred HHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecc
Confidence 99999999999999999999999999999999999999999999999999999999996 77899999999999999999
Q ss_pred CCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHH
Q 000099 1414 QSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGL 1493 (2240)
Q Consensus 1414 QaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~ 1493 (2240)
+.||+||+||.++||..+.||.+||||+||+|+|+||+|++ .++|||.
T Consensus 846 t~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLIt--------------------------------k~TIEE~ 893 (941)
T KOG0389|consen 846 TCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLIT--------------------------------KSTIEEG 893 (941)
T ss_pred cccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEe--------------------------------cCcHHHH
Confidence 99999999999999999999999999999999999999987 4899999
Q ss_pred HHHHHHHhhhHHHHHHHhcccc
Q 000099 1494 IRNNIQQYKIDMADEVINAGRF 1515 (2240)
Q Consensus 1494 IlerIqe~KldmddkVIqAGkF 1515 (2240)
|+. +++.|+.++..+...++-
T Consensus 894 I~~-lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 894 ILR-LAKTKLALEADLTEDGKG 914 (941)
T ss_pred HHH-HHHHhhhhhhhhccCccc
Confidence 997 788999988888766553
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-84 Score=795.78 Aligned_cols=469 Identities=33% Similarity=0.585 Sum_probs=407.8
Q ss_pred cCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 991 ~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
..|..+.. .|++||.+||+||+.+|.++.||||+||||||||||+|++|+.|.......+|+|||||.+++.||..||.
T Consensus 197 ~vPg~I~~-~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~ 275 (923)
T KOG0387|consen 197 KVPGFIWS-KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQ 275 (923)
T ss_pred cccHHHHH-HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHH
Confidence 45665543 89999999999999999999999999999999999999999999986577799999999999999999999
Q ss_pred HHCCCCeEEEEecchhh-Hh---------HHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhH
Q 000099 1071 KWLPSVSCIYYVGAKDQ-RS---------RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV 1140 (2240)
Q Consensus 1071 Kw~PslkVvvy~Gskde-Rk---------~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SK 1140 (2240)
+|+|.++|.+|+|+... |. ..+-........+|+||||+.++...+.+..+.|+|||+||+|+|+|++++
T Consensus 276 ~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~ 355 (923)
T KOG0387|consen 276 TWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSK 355 (923)
T ss_pred HhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccH
Confidence 99999999999997652 11 010011224556899999999999999999999999999999999999999
Q ss_pred HHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000099 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (2240)
Q Consensus 1141 lskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RL 1220 (2240)
++.+++.+++.+|++|||||+||+|.|||+||+|+.|+.+++...|.+.|..|+..++...... ........+.-.|
T Consensus 356 islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~---~qv~~aykca~~L 432 (923)
T KOG0387|consen 356 ISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASP---RQVQTAYKCAVAL 432 (923)
T ss_pred HHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCH---HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887765444 2333444566789
Q ss_pred HHHhhHHHHHhhhhhhcc-CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000099 1221 HQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (2240)
Q Consensus 1221 hklLrPFmLRRlKkDVek-dLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilm 1299 (2240)
+.+|.||+|||+|.||.. .||.|.++|++|.||+.|+.+|..+.+...+. .+... ...+...+.
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~--------~i~ng-------~~~~l~Gi~ 497 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVN--------KILNG-------KRNCLSGID 497 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHH--------HHHcC-------CccceechH
Confidence 999999999999999999 99999999999999999999999886642211 11100 012233467
Q ss_pred HHHHHcCCCCCCCCC--ccccchh--hHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHH-hcCceEEee
Q 000099 1300 ELRKTCNHPLLNYPY--FSDLSKD--FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ-WRQLVYRRI 1374 (2240)
Q Consensus 1300 qLRKICNHP~L~~p~--~~~ls~d--~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~-~rGiky~rL 1374 (2240)
-||++||||.+.... ......+ ..+..|||+++|..+|..+...|+|||+|+|.+.|+|+|+.+|. ..||.|+|+
T Consensus 498 iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRm 577 (923)
T KOG0387|consen 498 ILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRM 577 (923)
T ss_pred HHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEe
Confidence 799999999997653 2212222 46789999999999999999999999999999999999999999 799999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1375 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1375 DGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
||.|+...|..+|++||. +..++|||++|++||+||||+.||.||||||+|||..+.||..|||||||+|+|.||||++
T Consensus 578 DGtT~~~~R~~lVd~Fne-~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t 656 (923)
T KOG0387|consen 578 DGTTPAALRQKLVDRFNE-DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMT 656 (923)
T ss_pred cCCCccchhhHHHHhhcC-CCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEec
Confidence 999999999999999996 6678999999999999999999999999999999999999999999999999999999987
Q ss_pred hHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhc
Q 000099 1455 VVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512 (2240)
Q Consensus 1455 VEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqA 1512 (2240)
.+||||+|+.+ |=+|..+.+.++..
T Consensus 657 --------------------------------~gTIEEkiY~r-QI~Kq~Ltn~il~~ 681 (923)
T KOG0387|consen 657 --------------------------------AGTIEEKIYHR-QIFKQFLTNRILKN 681 (923)
T ss_pred --------------------------------CCcHHHHHHHH-HHHHHHHHHHHhcC
Confidence 37899999875 67888888888854
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-81 Score=786.13 Aligned_cols=487 Identities=33% Similarity=0.556 Sum_probs=421.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechHHHHHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNAVLVNWKSELHKW 1072 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (2240)
.+||.||++||+|+..++..+++|||||+||||||+|+|++++.-...+. ..-|.|||||.+|..+|+.|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 48999999999999999999999999999999999999999976544321 335889999999999999999999
Q ss_pred CCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccce
Q 000099 1073 LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR 1152 (2240)
Q Consensus 1073 ~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~ 1152 (2240)
+|-++++.|.|.+.+|..+..+ ..+.+|+||+|+.+++|...|.++.|.|+|+||+|-|||..++++++++.+++.+
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q---~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~h 1130 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ---YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANH 1130 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh---ccccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHHHHHhhcc
Confidence 9999999999999999877543 4567999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
||+|||||+||+..|||+||+||+|+++|+.+.|.+.|.+|+........ ...+.+...+.+..||+.+-||||||+
T Consensus 1131 RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~---Sske~EaG~lAleaLHKqVLPF~LRRl 1207 (1549)
T KOG0392|consen 1131 RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKS---SSKEQEAGVLALEALHKQVLPFLLRRL 1207 (1549)
T ss_pred eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCccc---chhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987644332 335677888999999999999999999
Q ss_pred hhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000099 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~ 1312 (2240)
|.||+++||+|+....+|+|++.|+++|+.+.......++...+......+. ....+...+..|||.||||.+..
T Consensus 1208 KedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt-----~~~HvFqaLqYlrKLcnHpaLvl 1282 (1549)
T KOG0392|consen 1208 KEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGT-----DKTHVFQALQYLRKLCNHPALVL 1282 (1549)
T ss_pred HHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCc-----chHHHHHHHHHHHHhcCCcceee
Confidence 9999999999999999999999999999998776333322211111111110 14567788899999999999975
Q ss_pred CC----cccc------chhh--HhhcccHHHHHHHHHHHHH--------------hcCCeEEEEecchhHHHHHHHHHHh
Q 000099 1313 PY----FSDL------SKDF--LVKSCGKLWILDRILIKLQ--------------RTGHRVLLFSTMTKLLDILEEYLQW 1366 (2240)
Q Consensus 1313 p~----~~~l------s~d~--LirsSGKLelLdrIL~kL~--------------atGhKVLIFSQ~t~~LDiLed~L~~ 1366 (2240)
.. +..+ .... -+..++|+..|..||.++- ..+||||||||+..++|++++-|-.
T Consensus 1283 t~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k 1362 (1549)
T KOG0392|consen 1283 TPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFK 1362 (1549)
T ss_pred CCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhh
Confidence 42 1100 0111 2678999999999999883 1479999999999999999988765
Q ss_pred c---CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCC
Q 000099 1367 R---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1443 (2240)
Q Consensus 1367 r---Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQ 1443 (2240)
. .+.|.||||+++..+|.+++++||+ |..+.|+|++|.+||+||||++||||||++-||||..++||++|||||||
T Consensus 1363 ~~mpsVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQ 1441 (1549)
T KOG0392|consen 1363 KYMPSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQ 1441 (1549)
T ss_pred hhcCceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcC
Confidence 4 5668999999999999999999997 77889999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHH
Q 000099 1444 KREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEE 1523 (2240)
Q Consensus 1444 KKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eE 1523 (2240)
|+.|.||||++ .|++||+|+. +|++|+++++.||++..-+..+....
T Consensus 1442 KrvVNVyRlIt--------------------------------rGTLEEKVMg-LQkFKmnvAntvInqqNasl~tM~Td 1488 (1549)
T KOG0392|consen 1442 KRVVNVYRLIT--------------------------------RGTLEEKVMG-LQKFKMNVANTVINQQNASLETMDTD 1488 (1549)
T ss_pred ceeeeeeeehh--------------------------------cccHHHHHhh-HHHHhhHHHHHHHhcccccccccCHH
Confidence 99999999976 3899999997 89999999999999988777777766
Q ss_pred HHHHHHH
Q 000099 1524 RRMTLET 1530 (2240)
Q Consensus 1524 Rr~~Le~ 1530 (2240)
....|..
T Consensus 1489 qLLdlF~ 1495 (1549)
T KOG0392|consen 1489 QLLDLFT 1495 (1549)
T ss_pred HHHHHhc
Confidence 6555555
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-64 Score=640.61 Aligned_cols=466 Identities=30% Similarity=0.443 Sum_probs=380.0
Q ss_pred CCCCcHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC----CCeEEEechHHHHHHHH
Q 000099 998 AGTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNY----GPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~----GP~LIVVP~SLL~QW~~ 1067 (2240)
...|||||.+|+.||..... +..|||+||+||+|||+++|++|+.++...+.+ ...|||||.+||.||.+
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkk 315 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKK 315 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHH
Confidence 35899999999999997552 456789999999999999999999999866653 45699999999999999
Q ss_pred HHHHHCC--CCeEEEEecchhhH----hHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHH
Q 000099 1068 ELHKWLP--SVSCIYYVGAKDQR----SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVL 1141 (2240)
Q Consensus 1068 Ef~Kw~P--slkVvvy~GskdeR----k~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKl 1141 (2240)
||.+|.. .+....+.|..+.. ..++.........-|+|.+|+.+.++...+....+++||+||+|++||..+.+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~ 395 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLT 395 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHH
Confidence 9999986 46777777766541 11111112223346899999999999999999999999999999999999999
Q ss_pred HHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000099 1142 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (2240)
Q Consensus 1142 skaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLh 1221 (2240)
+++|..+.+++||+|||||+||++.|+|++|+|++|+++++...|...|..|+.........+.+... + .-+..|.
T Consensus 396 ~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~-~---~rl~eL~ 471 (776)
T KOG0390|consen 396 LKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER-E---ERLQELR 471 (776)
T ss_pred HHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh-H---HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876554433222111 2 2278899
Q ss_pred HHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1222 klLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
.++..|++||+-..+.++||.+.+++|.|.+++.|..+|+.+.... .. .. ........+..|
T Consensus 472 ~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~-------~~----------~~~~~l~~~~~L 533 (776)
T KOG0390|consen 472 ELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM-------RT----------LKGYALELITKL 533 (776)
T ss_pred HHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh-------hh----------hhcchhhHHHHH
Confidence 9999999999999999999999999999999999999999887642 10 00 001134567789
Q ss_pred HHHcCCCCCCCC-Ccc-----ccc-----------h-hhHhhcccHHHHHHHHHHHHHhc-CCeEEEEecchhHHHHHHH
Q 000099 1302 RKTCNHPLLNYP-YFS-----DLS-----------K-DFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEE 1362 (2240)
Q Consensus 1302 RKICNHP~L~~p-~~~-----~ls-----------~-d~LirsSGKLelLdrIL~kL~at-GhKVLIFSQ~t~~LDiLed 1362 (2240)
+++||||.|... ... ... . ..-...++|+..|+.+|...++. -.++++.++++.++|+++.
T Consensus 534 ~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~ 613 (776)
T KOG0390|consen 534 KKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQ 613 (776)
T ss_pred HHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHH
Confidence 999999998631 000 000 0 01123479999999998665543 4567777889999999999
Q ss_pred HHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccC
Q 000099 1363 YLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1363 ~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIG 1442 (2240)
.++++|+.+++|||+|+..+|+.+|+.||++.+..||||+|++|||+||||.+|++||+||++|||+.+.||++||||.|
T Consensus 614 ~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdG 693 (776)
T KOG0390|consen 614 LCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDG 693 (776)
T ss_pred HHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCcc
Q 000099 1443 QKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQR 1518 (2240)
Q Consensus 1443 QKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~k 1518 (2240)
|+|.|+||+|++ .++|||.|+.+ |-.|.-+...|++...-..+
T Consensus 694 QKk~v~iYrLla--------------------------------tGtiEEk~~qr-q~~K~~lS~~v~~~~~~~~~ 736 (776)
T KOG0390|consen 694 QKKPVYIYRLLA--------------------------------TGTIEEKIYQR-QTHKEGLSSMVFDEEEDVEK 736 (776)
T ss_pred CcceEEEEEeec--------------------------------CCCchHHHHHH-HHHhhhhhheEEeccccccc
Confidence 999999999987 25677777664 45555555555555443333
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-62 Score=642.82 Aligned_cols=470 Identities=40% Similarity=0.635 Sum_probs=400.9
Q ss_pred cCCCCCcHHHHHHHHHHH-HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEechHHHHHHHHHHHHHC
Q 000099 996 LRAGTLRDYQIVGLQWML-SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPNAVLVNWKSELHKWL 1073 (2240)
Q Consensus 996 L~ggtLRPYQleGLqwLl-sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP~SLL~QW~~Ef~Kw~ 1073 (2240)
...++|++||.+|++|+. .++....+|||||+||+|||+|+|+++.++++.... .+|+|||||.+++.||.+||.+|+
T Consensus 334 ~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~ 413 (866)
T COG0553 334 DLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFA 413 (866)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhC
Confidence 334689999999999999 899999999999999999999999999987665554 689999999999999999999999
Q ss_pred CCCe-EEEEecchhh----HhHHHHHHHhh---cCCcEEEEcHHHHHH---hhhhccccCcceEecccccccCCchhHHH
Q 000099 1074 PSVS-CIYYVGAKDQ----RSRLFSQEVAA---LKFNVLVTTYEFIMY---DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (2240)
Q Consensus 1074 Pslk-Vvvy~Gskde----Rk~l~~qei~~---~~fdVVITTYE~L~k---D~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (2240)
|.++ +.+++|.... +..+ ...... ..++|++|||+.+.. +...+..+.|+++|+||||++||..+..+
T Consensus 414 ~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~ 492 (866)
T COG0553 414 PDLRLVLVYHGEKSELDKKREAL-RDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEG 492 (866)
T ss_pred ccccceeeeeCCcccccHHHHHH-HHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHH
Confidence 9999 9999998753 2222 111111 238999999999999 99999999999999999999999999999
Q ss_pred HHhhccccceEEEeecCCCCCCHHHHHHHHh-hhcccccC-ChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000099 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLN-LLLPEVFD-NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (2240)
Q Consensus 1143 kaLk~Lks~~RLLLTGTPLQNnL~ELwSLLn-FLlP~iF~-S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RL 1220 (2240)
+++..+++.++++|||||++|++.|||++++ |++|++++ +...|..||..++........ .+.....+.+|
T Consensus 493 ~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~-------~~~~~~~~~~l 565 (866)
T COG0553 493 KALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP-------LEARELGIELL 565 (866)
T ss_pred HHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc-------hhhHHHHHHHH
Confidence 9999999999999999999999999999999 99999999 558999999999877643321 12223345669
Q ss_pred HHHhhHHHHHhhhhh--hccCCCCceEEEEEeccCHHHHHHHHHHHHcc---CcccCchhHHhhhhcChhhHHH--HHHH
Q 000099 1221 HQILEPFMLRRRVED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG---TLRVDPEDEKRRVQKNPIYQAK--VYKT 1293 (2240)
Q Consensus 1221 hklLrPFmLRRlKkD--VekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~---~l~ld~~~e~~~l~~~~~~~ak--~~~s 1293 (2240)
+.++.||++||+|.+ +..+||++.+.++.|.|+..|..+|..+.... ...+.... ......... ....
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 640 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLE-----KADSDENRIGDSELN 640 (866)
T ss_pred HHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccccccccchhhH
Confidence 999999999999999 89999999999999999999999999886632 11100000 000000000 1456
Q ss_pred HHHHHHHHHHHcCCCCCCCCC-cc---------------ccchhhHhhcc-cHHHHHHHHH-HHHHhcCC--eEEEEecc
Q 000099 1294 LNNRCMELRKTCNHPLLNYPY-FS---------------DLSKDFLVKSC-GKLWILDRIL-IKLQRTGH--RVLLFSTM 1353 (2240)
Q Consensus 1294 L~nilmqLRKICNHP~L~~p~-~~---------------~ls~d~LirsS-GKLelLdrIL-~kL~atGh--KVLIFSQ~ 1353 (2240)
+.+.++.||++|+||.++... .. ......++..| +|+..++++| ..+...++ |||||++|
T Consensus 641 ~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~ 720 (866)
T COG0553 641 ILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQF 720 (866)
T ss_pred HHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCc
Confidence 788999999999999998765 11 11123456778 9999999999 89999999 99999999
Q ss_pred hhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHH
Q 000099 1354 TKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ 1433 (2240)
Q Consensus 1354 t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~Q 1433 (2240)
+.++++|+.+|...++.|+++||+++.+.|..++++|+++ ..++|||+|++|||.||||+.|++||+||++|||..+.|
T Consensus 721 t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Q 799 (866)
T COG0553 721 TPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQ 799 (866)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHH
Confidence 9999999999999999999999999999999999999985 678999999999999999999999999999999999999
Q ss_pred HhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhc
Q 000099 1434 AVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINA 1512 (2240)
Q Consensus 1434 AiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqA 1512 (2240)
|++|+|||||+++|.||++++ .++|||+|+. ++..|..+...++++
T Consensus 800 a~dRa~RigQ~~~v~v~r~i~--------------------------------~~tiEe~i~~-~~~~K~~l~~~~~~~ 845 (866)
T COG0553 800 AIDRAHRIGQKRPVKVYRLIT--------------------------------RGTIEEKILE-LQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHHhcCcceeEEEEeec--------------------------------CCcHHHHHHH-HHHHHHHHHHHHhhh
Confidence 999999999999999999976 3799999998 578899999999986
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-62 Score=598.88 Aligned_cols=552 Identities=24% Similarity=0.374 Sum_probs=412.6
Q ss_pred hhhhccCCCccCCCCCcHHHHHHHHHHHHhh---------cCCCCeEEEcCCCchHHHHHHHHHHHHH-HHhCCCCCeEE
Q 000099 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLY---------NNKLNGILADEMGLGKTVQVMALIAYLM-EFKGNYGPHLI 1055 (2240)
Q Consensus 986 ~e~v~~qPs~L~ggtLRPYQleGLqwLlsL~---------~n~lnGILADEMGLGKTIQAIALIa~Ll-e~kg~~GP~LI 1055 (2240)
.+.....|..|.. .|+|||..||+||+... ..+.|||||+-||||||+|+|+|+..++ ..+-....+||
T Consensus 655 ~e~~VqV~rslv~-kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLv 733 (1567)
T KOG1015|consen 655 KEPLVQVHRSLVI-KLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALV 733 (1567)
T ss_pred ccchhhccHhHHh-hcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEE
Confidence 3455566766654 89999999999999644 2578899999999999999999886654 44556779999
Q ss_pred EechHHHHHHHHHHHHHCCCC------eEEEEe--cchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh-------------
Q 000099 1056 IVPNAVLVNWKSELHKWLPSV------SCIYYV--GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------------- 1114 (2240)
Q Consensus 1056 VVP~SLL~QW~~Ef~Kw~Psl------kVvvy~--GskdeRk~l~~qei~~~~fdVVITTYE~L~kD------------- 1114 (2240)
|||.+++.||..||.+|.+++ .|..+. ..+..|..++..+ ...-.|+|+-|++++..
T Consensus 734 V~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W--~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke 811 (1567)
T KOG1015|consen 734 VCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRW--QEDGGVMIIGYDMYRNLAQGRNVKSRKLKE 811 (1567)
T ss_pred EcchHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHH--HhcCCEEEEehHHHHHHhcccchhhhHHHH
Confidence 999999999999999999863 222221 2233444433322 33448999999998642
Q ss_pred --hhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC
Q 000099 1115 --RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192 (2240)
Q Consensus 1115 --~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~k 1192 (2240)
...|..-..|+||+||||.|||..+.+++++..+++.+||+|||||+||||.|++++++|+.|+++++...|...|..
T Consensus 812 ~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvN 891 (1567)
T KOG1015|consen 812 IFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVN 891 (1567)
T ss_pred HHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcC
Confidence 122344478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccC
Q 000099 1193 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD 1272 (2240)
Q Consensus 1193 Pf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld 1272 (2240)
||.++...+....+..-. ..-.+.|+.+|.-|+-|+--.-+.+.||||.++||.+.||+.|..||.+++.+.... .
T Consensus 892 pI~nGq~~dST~~DVr~M---k~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~-G 967 (1567)
T KOG1015|consen 892 PIQNGQCADSTMVDVRVM---KKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGV-G 967 (1567)
T ss_pred ccccCccCCCcHHHHHHH---HHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhcccc-C
Confidence 999987665544322111 122466899999999999888888999999999999999999999999998843221 1
Q ss_pred chhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC------------------Cc---c---------------
Q 000099 1273 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP------------------YF---S--------------- 1316 (2240)
Q Consensus 1273 ~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p------------------~~---~--------------- 1316 (2240)
...+. . ...-+.|+....-|++|.+||+...- +. .
T Consensus 968 ~d~eg-----~----~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~ 1038 (1567)
T KOG1015|consen 968 NDSEG-----G----RGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKK 1038 (1567)
T ss_pred Ccccc-----c----cchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhc
Confidence 11110 0 11234566677789999999986110 00 0
Q ss_pred ---------cc------------------------------------c-------------------------------h
Q 000099 1317 ---------DL------------------------------------S-------------------------------K 1320 (2240)
Q Consensus 1317 ---------~l------------------------------------s-------------------------------~ 1320 (2240)
+. . .
T Consensus 1039 ~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d 1118 (1567)
T KOG1015|consen 1039 KKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEAD 1118 (1567)
T ss_pred ccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhh
Confidence 00 0 0
Q ss_pred hhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh----------------------cCceEEeecCCC
Q 000099 1321 DFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----------------------RQLVYRRIDGTT 1378 (2240)
Q Consensus 1321 d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~----------------------rGiky~rLDGsT 1378 (2240)
......|||+.+|.+||..+.+-|.|+|||+|....+|+|++||.. +|..|.+|||++
T Consensus 1119 ~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst 1198 (1567)
T KOG1015|consen 1119 AEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGST 1198 (1567)
T ss_pred hhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcc
Confidence 0124568999999999999999999999999999999999999963 267799999999
Q ss_pred CHHHHHHHHHHHhcCC-CCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHH
Q 000099 1379 SLEDRESAIVDFNSHD-SDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVD 1457 (2240)
Q Consensus 1379 s~eEReeaIk~FNs~D-s~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEE 1457 (2240)
+...|..+.+.||++. -..++|||||+||++||||-+|+.|||||-.|||.-+.|+|-|++|.||+|+|+||+|++
T Consensus 1199 ~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiA--- 1275 (1567)
T KOG1015|consen 1199 TSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIA--- 1275 (1567)
T ss_pred cHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhh---
Confidence 9999999999999864 457899999999999999999999999999999999999999999999999999999976
Q ss_pred HhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHHHHHHHHHHHhh---
Q 000099 1458 KISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHD--- 1534 (2240)
Q Consensus 1458 kI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eERr~~Le~LLe~--- 1534 (2240)
.|++|++|+++ |-.|..++-.|++.......-+.+ .|..|+.=
T Consensus 1276 -----------------------------qGTmEeKIYkR-QVTKqsls~RVVDeqQv~Rhy~~n----eLteLy~fep~ 1321 (1567)
T KOG1015|consen 1276 -----------------------------QGTMEEKIYKR-QVTKQSLSFRVVDEQQVERHYTMN----ELTELYTFEPD 1321 (1567)
T ss_pred -----------------------------cccHHHHHHHH-HHhHhhhhhhhhhHHHHHHHhhHh----hhHHHhhcCCc
Confidence 36777777775 456666666666543321111111 22222221
Q ss_pred --hhhhhccccCCCCHHHHHHHHhcCHHHHHHHHhhhhhhCc--chhhhccccchHHHhh
Q 000099 1535 --EERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGW--IEEMTRYDQVPKWLRA 1590 (2240)
Q Consensus 1535 --ee~~~e~~~~v~~~eeLN~~lARseeE~elf~~mD~er~~--~~~l~~~~evP~~lr~ 1590 (2240)
+...+......+.+..+.+++.-..+-+--+-..|.-+.- .++++..+.-|.|.-+
T Consensus 1322 ~ddp~sEr~~~~lpKdrllae~l~~~q~~i~~y~ehdSll~~~e~eelteee~k~aWaey 1381 (1567)
T KOG1015|consen 1322 LDDPNSERDTPMLPKDRLLAELLQIHQEHIVGYHEHDSLLDHKEEEELTEEERKAAWAEY 1381 (1567)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHhhhhhhhhhhhcchhHHHHHHHhhhhhhhhH
Confidence 1111112234556666666666555444444444433322 2345666777888754
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-61 Score=562.98 Aligned_cols=464 Identities=32% Similarity=0.452 Sum_probs=375.1
Q ss_pred hhccCCCccCCCCCcHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
+-.+||.-|. ..|-|||++||.|+..... .-.|||||||||.|||||+|+|++. .....|+|||||.-.+.||.
T Consensus 173 e~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~ 247 (791)
T KOG1002|consen 173 ERAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWK 247 (791)
T ss_pred hcccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHH
Confidence 3457898876 4899999999999997665 4568899999999999999999875 23456899999999999999
Q ss_pred HHHHHHCC-CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh-----------------hhhccccCcceEec
Q 000099 1067 SELHKWLP-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD-----------------RSKLSKVDWKYIII 1128 (2240)
Q Consensus 1067 ~Ef~Kw~P-slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD-----------------~s~L~kikWd~VII 1128 (2240)
+||.+++. .+++++|+|.+.... .....+++||+|||..+-.. .+.|..++|..||+
T Consensus 248 nEI~~~T~gslkv~~YhG~~R~~n-----ikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIl 322 (791)
T KOG1002|consen 248 NEIERHTSGSLKVYIYHGAKRDKN-----IKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIIL 322 (791)
T ss_pred HHHHHhccCceEEEEEecccccCC-----HHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeeh
Confidence 99999984 589999999764431 12356899999999877432 45688899999999
Q ss_pred ccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCCh-------------------------
Q 000099 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR------------------------- 1183 (2240)
Q Consensus 1129 DEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~------------------------- 1183 (2240)
||||.||+..|...+++..+.+.+||.|||||+||++.|||+|+.||....|.-+
T Consensus 323 DEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h 402 (791)
T KOG1002|consen 323 DEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSH 402 (791)
T ss_pred hhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccc
Confidence 9999999999999999999999999999999999999999999999977765311
Q ss_pred --H----HHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhcc--CCCCceEEEEEeccCHH
Q 000099 1184 --K----AFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAI 1255 (2240)
Q Consensus 1184 --~----sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVek--dLP~KvE~vV~c~LS~~ 1255 (2240)
. -|...+.+|+...|...- ........|.+|..+||||+|-+-.. .|||.+..+-.-.++..
T Consensus 403 ~~m~h~~~~n~~mlk~IqkfG~eGp----------Gk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~e 472 (791)
T KOG1002|consen 403 NIMQHTCFFNHFMLKPIQKFGVEGP----------GKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEE 472 (791)
T ss_pred hhhhhhhhhcccccccchhhcccCc----------hHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhH
Confidence 0 011122244444432211 12234467889999999999876544 38999999988889999
Q ss_pred HHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCC-----------------cccc
Q 000099 1256 QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY-----------------FSDL 1318 (2240)
Q Consensus 1256 Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~-----------------~~~l 1318 (2240)
+..+|+.+........+...+...+. ..|..+...+.+||+.+.||+|+.-. ..+.
T Consensus 473 E~D~YeSLY~dSkrkfntyieeGvvl-------NNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~ 545 (791)
T KOG1002|consen 473 EKDLYESLYKDSKRKFNTYIEEGVVL-------NNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDP 545 (791)
T ss_pred HHHHHHHHHHhhHHhhhhHHhhhhhh-------hhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCCh
Confidence 99999988665443333333332222 34788999999999999999984210 0000
Q ss_pred chh-----------------------------------------------------------------hHhhcccHHHHH
Q 000099 1319 SKD-----------------------------------------------------------------FLVKSCGKLWIL 1333 (2240)
Q Consensus 1319 s~d-----------------------------------------------------------------~LirsSGKLelL 1333 (2240)
..+ .-+..|.|++.|
T Consensus 546 aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL 625 (791)
T KOG1002|consen 546 AEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEAL 625 (791)
T ss_pred hhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHH
Confidence 000 025567899999
Q ss_pred HHHHHHHHhcC--CeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccC
Q 000099 1334 DRILIKLQRTG--HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 1411 (2240)
Q Consensus 1334 drIL~kL~atG--hKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGL 1411 (2240)
.+-|..+.+.. -|.|||+|||.++|+|.-.|...|+.++.|.|+|+...|...|+.|.. +.+|+|||+|.+|||..|
T Consensus 626 ~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVAL 704 (791)
T KOG1002|consen 626 VEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVAL 704 (791)
T ss_pred HHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEe
Confidence 98888887654 589999999999999999999999999999999999999999999986 889999999999999999
Q ss_pred CCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHH
Q 000099 1412 NLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIE 1491 (2240)
Q Consensus 1412 NLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIE 1491 (2240)
||+.|..|+++||||||....||++|+|||||.++|+|++|+. .++||
T Consensus 705 NLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~i--------------------------------EnsiE 752 (791)
T KOG1002|consen 705 NLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCI--------------------------------ENSIE 752 (791)
T ss_pred eechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeeh--------------------------------hccHH
Confidence 9999999999999999999999999999999999999999963 27999
Q ss_pred HHHHHHHHHhhhHHHHHHHhc
Q 000099 1492 GLIRNNIQQYKIDMADEVINA 1512 (2240)
Q Consensus 1492 E~IlerIqe~KldmddkVIqA 1512 (2240)
++|++ +|++|.+|....|+.
T Consensus 753 ~kIie-LQeKKa~mihaTi~q 772 (791)
T KOG1002|consen 753 EKIIE-LQEKKANMIHATIGQ 772 (791)
T ss_pred HHHHH-HHHHHhhhhhhhcCC
Confidence 99997 889998888877764
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-59 Score=564.69 Aligned_cols=468 Identities=26% Similarity=0.422 Sum_probs=379.8
Q ss_pred hccCCCccCCCCCcHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH
Q 000099 989 VMRQPSMLRAGTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA 1060 (2240)
Q Consensus 989 v~~qPs~L~ggtLRPYQleGLqwLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~k-------g~~GP~LIVVP~S 1060 (2240)
+++.|..+. ..|.|||..++.||+.... .+.||||||+||||||+..|++|..-.... ....++|||||.+
T Consensus 315 lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS 393 (901)
T KOG4439|consen 315 LTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS 393 (901)
T ss_pred ccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH
Confidence 345676664 4899999999999997654 456889999999999999999997654321 1223699999999
Q ss_pred HHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHH----------hhhhccccCcceEec
Q 000099 1061 VLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY----------DRSKLSKVDWKYIII 1128 (2240)
Q Consensus 1061 LL~QW~~Ef~Kw~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~k----------D~s~L~kikWd~VII 1128 (2240)
++.||..||.+... .+.|++|||... | .+- ......||||||||..+.. ....|..+.|.+||+
T Consensus 394 li~qW~~Ev~~rl~~n~LsV~~~HG~n~-r-~i~--~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVIL 469 (901)
T KOG4439|consen 394 LIHQWEAEVARRLEQNALSVYLYHGPNK-R-EIS--AKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVIL 469 (901)
T ss_pred HHHHHHHHHHHHHhhcceEEEEecCCcc-c-cCC--HHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhh
Confidence 99999999999874 489999999874 1 221 2235689999999998876 245688899999999
Q ss_pred ccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000099 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1208 (2240)
Q Consensus 1129 DEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l 1208 (2240)
||||.++|+.++.+.++..+.+.+||+|||||++|++-|+|+|+.||.-..|++...|.+|+..+-..+
T Consensus 470 DEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g----------- 538 (901)
T KOG4439|consen 470 DEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG----------- 538 (901)
T ss_pred hhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999986542221
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhcc-----CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCc----------
Q 000099 1209 ETEKKVIIIHRLHQILEPFMLRRRVEDVEG-----SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDP---------- 1273 (2240)
Q Consensus 1209 ~~Ee~~lii~RLhklLrPFmLRRlKkDVek-----dLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~---------- 1273 (2240)
..||.-+..+.||||+|..+-. .||.+...++.+.|+..+...|+-+.......+..
T Consensus 539 --------~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~ 610 (901)
T KOG4439|consen 539 --------ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNN 610 (901)
T ss_pred --------hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3466777899999999998766 79999999999999999999998664321111100
Q ss_pred --h--hHHhhh---------------hcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccc-----------------
Q 000099 1274 --E--DEKRRV---------------QKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD----------------- 1317 (2240)
Q Consensus 1274 --~--~e~~~l---------------~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~----------------- 1317 (2240)
. ...... .....+.......++-.+++||++|+||.+....++.
T Consensus 611 ~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e 690 (901)
T KOG4439|consen 611 DGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLE 690 (901)
T ss_pred ccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhh
Confidence 0 000000 0000111223344778899999999999552211100
Q ss_pred -----------------cc-----------hhhHhhcccHHHHHHHHHHHH-HhcCCeEEEEecchhHHHHHHHHHHhcC
Q 000099 1318 -----------------LS-----------KDFLVKSCGKLWILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQ 1368 (2240)
Q Consensus 1318 -----------------ls-----------~d~LirsSGKLelLdrIL~kL-~atGhKVLIFSQ~t~~LDiLed~L~~rG 1368 (2240)
.. .....+.|.|+..+..+|..+ .....|++|.+||+.++++++..|...|
T Consensus 691 ~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g 770 (901)
T KOG4439|consen 691 EDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGG 770 (901)
T ss_pred hhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCC
Confidence 00 001244678999888888887 5678999999999999999999999999
Q ss_pred ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEE
Q 000099 1369 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1369 iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
+.|..++|.+..++|+.+++.||...+..+|+|||.-|||.||||..|+++|++|..|||+.+.||.+|++|+||+|+|+
T Consensus 771 ~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~ 850 (901)
T KOG4439|consen 771 HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVF 850 (901)
T ss_pred eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceE
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000099 1449 VIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (2240)
Q Consensus 1449 VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAG 1513 (2240)
||+|+. .++||++|.. +|++|++++.-|+.+.
T Consensus 851 IhR~~~--------------------------------~gTvEqrV~~-LQdkKldlA~~VL~G~ 882 (901)
T KOG4439|consen 851 IHRLMC--------------------------------KGTVEQRVKS-LQDKKLDLAKGVLTGS 882 (901)
T ss_pred EEEEEe--------------------------------cCcHHHHHHH-HHHHHHHHHhhhccCc
Confidence 999976 3899999987 8999999999999853
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=498.92 Aligned_cols=482 Identities=32% Similarity=0.466 Sum_probs=365.7
Q ss_pred CCCcHHHHHHHHHHHH-------hh--cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLS-------LY--NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL 1069 (2240)
Q Consensus 999 gtLRPYQleGLqwLls-------L~--~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef 1069 (2240)
..|+|||+-||.||.. .| ..+.|||||+.||||||+|+|+++--++. .-..+.+|+|||..+|.||..||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR-hT~AKtVL~ivPiNTlQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR-HTKAKTVLVIVPINTLQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-cCccceEEEEEehHHHHHHHHHh
Confidence 3699999999998863 22 25788999999999999999999987775 44567899999999999999999
Q ss_pred HHHCCC-----------CeEEEEecch---hhHhHHHHHHHhhcCCcEEEEcHHHHHHh---------------------
Q 000099 1070 HKWLPS-----------VSCIYYVGAK---DQRSRLFSQEVAALKFNVLVTTYEFIMYD--------------------- 1114 (2240)
Q Consensus 1070 ~Kw~Ps-----------lkVvvy~Gsk---deRk~l~~qei~~~~fdVVITTYE~L~kD--------------------- 1114 (2240)
..|.|. +.+.++.... +.|.++..++ ...-.|+++-|++++-.
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~W--v~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~ 409 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQW--VQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSG 409 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHH--hccCCEEEehHHHHHHHHHhcccccCCccccccccCCc
Confidence 999874 3444443322 3444444333 34557999999987532
Q ss_pred -----------------hhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcc
Q 000099 1115 -----------------RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP 1177 (2240)
Q Consensus 1115 -----------------~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP 1177 (2240)
.+.|.+-..|+||+||+|||||....++.+|+.+++++||.|||-|+||+|-|.|++++|+.|
T Consensus 410 ~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP 489 (1387)
T KOG1016|consen 410 FIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRP 489 (1387)
T ss_pred ccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccc
Confidence 112333357999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHH
Q 000099 1178 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQS 1257 (2240)
Q Consensus 1178 ~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr 1257 (2240)
+.+++..+|...|.+|+.++...+..-++.. ...+..+.||.+|..|+-||.-.-+...||.+.|+++.+.||..|+
T Consensus 490 ~yLGTR~eF~nmFErPI~NGQCvDStPdDvk---lmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR 566 (1387)
T KOG1016|consen 490 KYLGTRKEFINMFERPIKNGQCVDSTPDDVK---LMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQR 566 (1387)
T ss_pred cccchHHHHHHHhhccccCCccccCChhHHH---HHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHH
Confidence 9999999999999999999877766554432 2234567899999999999999888889999999999999999999
Q ss_pred HHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc----------------------
Q 000099 1258 AIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF---------------------- 1315 (2240)
Q Consensus 1258 ~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~---------------------- 1315 (2240)
.+|+.+..... +.+..+... .+.- +..+.-..||.|||.+.|..+
T Consensus 567 ~LY~~Fm~d~~---------r~~~~~~~~---~~NP-LkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~ 633 (1387)
T KOG1016|consen 567 QLYRNFMLDAK---------REIAANNDA---VFNP-LKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQ 633 (1387)
T ss_pred HHHHHHHHHHH---------Hhhcccccc---ccCh-HHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhccc
Confidence 99987642211 100000000 0000 011122344455654321100
Q ss_pred ----------------------------------------cccch-----------------hhHhhcccHHHHHHHHHH
Q 000099 1316 ----------------------------------------SDLSK-----------------DFLVKSCGKLWILDRILI 1338 (2240)
Q Consensus 1316 ----------------------------------------~~ls~-----------------d~LirsSGKLelLdrIL~ 1338 (2240)
.+... .-+...+.|+.++..++.
T Consensus 634 ~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~d 713 (1387)
T KOG1016|consen 634 QQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILD 713 (1387)
T ss_pred ccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeec
Confidence 00000 001222334444444555
Q ss_pred HHHhcCCeEEEEecchhHHHHHHHHHHhc------------------CceEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000099 1339 KLQRTGHRVLLFSTMTKLLDILEEYLQWR------------------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (2240)
Q Consensus 1339 kL~atGhKVLIFSQ~t~~LDiLed~L~~r------------------Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVf 1400 (2240)
+-..-|.++|||++....+|.|+++|..+ +..|+++||.++..+|+++|++||++-+-...|
T Consensus 714 es~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlf 793 (1387)
T KOG1016|consen 714 ESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLF 793 (1387)
T ss_pred cccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeee
Confidence 55556899999999999999999999866 245899999999999999999999854444589
Q ss_pred EEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhh
Q 000099 1401 LLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDL 1480 (2240)
Q Consensus 1401 LLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl 1480 (2240)
||||++|..||||-.|+.||+||..|||..+.||++|++|+||+|+|+||+|+.
T Consensus 794 llstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVm-------------------------- 847 (1387)
T KOG1016|consen 794 LLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVM-------------------------- 847 (1387)
T ss_pred eehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehh--------------------------
Confidence 999999999999999999999999999999999999999999999999999965
Q ss_pred cccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHHHHHHHHHHHhhhh
Q 000099 1481 AGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEE 1536 (2240)
Q Consensus 1481 ~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eERr~~Le~LLe~ee 1536 (2240)
-.++|..|+.+ +=.|..|.+.|++.-.-+..-+ +..++.|+...+
T Consensus 848 ------D~~lEkkIydR-QIsKqGmsdRvVDd~np~an~s----~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 848 ------DNSLEKKIYDR-QISKQGMSDRVVDDANPDANIS----QKELENLLMYDE 892 (1387)
T ss_pred ------hhhhHHHHHHH-HHhhccchhhhhcccCcccccc----HHHHHHHhhhhh
Confidence 25788888876 4568888888887654443333 345677776543
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=532.51 Aligned_cols=411 Identities=19% Similarity=0.234 Sum_probs=296.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkV 1078 (2240)
..|.|||+..+.+++..+ ..+.||||||||||||++++++.+++. .+..+|+|||||.+|+.||..|+.+||. +.+
T Consensus 151 ~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~-~g~~~rvLIVvP~sL~~QW~~El~~kF~-l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLL-TGRAERVLILVPETLQHQWLVEMLRRFN-LRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHH-cCCCCcEEEEcCHHHHHHHHHHHHHHhC-CCe
Confidence 369999999998876543 456799999999999999999888775 6677899999999999999999998874 444
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh---hhccccCcceEecccccccCCc---hhHHHHHhhcc--cc
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY--RC 1150 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrLKN~---~SKlskaLk~L--ks 1150 (2240)
.++.+........ ........++++|+||+++.++. ..+....|++|||||||++++. .++.++.+..+ ++
T Consensus 227 ~i~~~~~~~~~~~-~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~ 305 (956)
T PRK04914 227 SLFDEERYAEAQH-DADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVI 305 (956)
T ss_pred EEEcCcchhhhcc-cccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhcc
Confidence 5554432111000 00012235789999999998753 4566779999999999999953 46678888777 57
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC--Cc-------ccCCCCCCCChhhHHH-----------
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ--PF-------QKEGPTHNADDDWLET----------- 1210 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~k--Pf-------~~~g~~~~~e~d~l~~----------- 1210 (2240)
+++|+|||||++|+..|+|++|+||+|+.|++...|.+.... ++ .............+..
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~ 385 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLL 385 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHH
Confidence 799999999999999999999999999999999999765432 11 0111000000000000
Q ss_pred -----------HHHHHHHHHHHHH--hhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHH
Q 000099 1211 -----------EKKVIIIHRLHQI--LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEK 1277 (2240)
Q Consensus 1211 -----------Ee~~lii~RLhkl--LrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~ 1277 (2240)
.....++..|... ...+|+|+++.+|.. +|.+..+.+.+++.+.....+.....
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~-fp~R~~~~~~l~~~~~y~~~~~~~~~------------ 452 (956)
T PRK04914 386 QAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKG-FPKRELHPIPLPLPEQYQTAIKVSLE------------ 452 (956)
T ss_pred hhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC-CCcCceeEeecCCCHHHHHHHHHhHH------------
Confidence 0001111111111 136788999999864 89999999998887653333321000
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHH
Q 000099 1278 RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLL 1357 (2240)
Q Consensus 1278 ~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~L 1357 (2240)
..++. |.+|-..+..+. .....+..+.|++.|..+|..+. +.||||||++..++
T Consensus 453 ---------------------~~~~~-~l~pe~~~~~~~--~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~ 506 (956)
T PRK04914 453 ---------------------ARARD-MLYPEQIYQEFE--DNATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATA 506 (956)
T ss_pred ---------------------HHHHh-hcCHHHHHHHHh--hhhhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHH
Confidence 00000 011100000000 00011234679999998887653 78999999999999
Q ss_pred HHHHHHH-HhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhh
Q 000099 1358 DILEEYL-QWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVA 1436 (2240)
Q Consensus 1358 DiLed~L-~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiG 1436 (2240)
+.|.+.| ...|+++..|||+++..+|.++++.|+++++.+. |||||++||+||||+.|++||+||+||||..|+||+|
T Consensus 507 ~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIG 585 (956)
T PRK04914 507 LQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIG 585 (956)
T ss_pred HHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEEechhhccCCCcccccEEEEecCCCCHHHHHHHhc
Confidence 9999999 5679999999999999999999999997554555 5788899999999999999999999999999999999
Q ss_pred hhhccCCcceEEEEEEeh
Q 000099 1437 RAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1437 RAhRIGQKKeV~VyrLvT 1454 (2240)
|+||+||++.|.||+++.
T Consensus 586 R~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 586 RLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred ccccCCCCceEEEEEccC
Confidence 999999999999998854
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-49 Score=464.41 Aligned_cols=418 Identities=27% Similarity=0.345 Sum_probs=315.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVv 1079 (2240)
.|.|||++||.+.+. .+.++|||||||||||+|||++..|... .+|.|||||.++...|..+|.+|+|.+..+
T Consensus 198 ~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyra----EwplliVcPAsvrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRA----EWPLLIVCPASVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhh----cCcEEEEecHHHhHHHHHHHHHhcccccce
Confidence 699999999999885 5666799999999999999998887664 469999999999999999999999987552
Q ss_pred -EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc--ccceEEEe
Q 000099 1080 -YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLL 1156 (2240)
Q Consensus 1080 -vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L--ks~~RLLL 1156 (2240)
+..+..+.- ........|.|.||+.+......|..-+|.+||+||+|++|+..++..+++.-+ ...+.|||
T Consensus 271 ~vv~~~~D~~------~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILL 344 (689)
T KOG1000|consen 271 FVVDKSSDPL------PDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILL 344 (689)
T ss_pred EEEecccCCc------cccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEe
Confidence 223332221 011223469999999999999999998999999999999999999999988866 67899999
Q ss_pred ecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh-HHHHHhhhhh
Q 000099 1157 TGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE-PFMLRRRVED 1235 (2240)
Q Consensus 1157 TGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr-PFmLRRlKkD 1235 (2240)
||||.-..+.|||.++..+++.+|.+..+|-..|...-...-..+ . .+.....+|+-+|. -.|+||+|.+
T Consensus 345 SGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~D-y--------kg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 345 SGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFD-Y--------KGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred cCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeee-c--------CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888776643211110000 0 00112335666664 4599999999
Q ss_pred hccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Q 000099 1236 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF 1315 (2240)
Q Consensus 1236 VekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~ 1315 (2240)
|+++||+|...++.+ ....+-...+.+.....-... . ..|+-.+.|.- ++
T Consensus 416 vL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~t~---------~--------------~~~e~~~~~l~--l~---- 465 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYV-SGGRIDARMDDLVKAAADYTK---------V--------------NSMERKHESLL--LF---- 465 (689)
T ss_pred HHhhCCccceEEEEE-cCCccchHHHHHHHHhhhcch---------h--------------hhhhhhhHHHH--HH----
Confidence 999999996655543 233333333333221110000 0 00000111100 00
Q ss_pred cccchhhHhhcccHHHHHHHHHHH----HHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1316 SDLSKDFLVKSCGKLWILDRILIK----LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1316 ~~ls~d~LirsSGKLelLdrIL~k----L~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
+-...-.|+....+.|.. ..+.+.|+||||....++|-|..++..+++.++||||+|+..+|..+++.|+
T Consensus 466 ------y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ 539 (689)
T KOG1000|consen 466 ------YSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQ 539 (689)
T ss_pred ------HHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhc
Confidence 000112233333333333 3456889999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccC
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSG 1471 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~ 1471 (2240)
. +.++.|-+||..|+|.||+|++|+.|||..++|||...+||.+|+|||||+..|.|+||++
T Consensus 540 ~-seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvA----------------- 601 (689)
T KOG1000|consen 540 T-SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVA----------------- 601 (689)
T ss_pred c-ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEe-----------------
Confidence 6 6789999999999999999999999999999999999999999999999999999999987
Q ss_pred CcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHH
Q 000099 1472 GTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV 1509 (2240)
Q Consensus 1472 gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkV 1509 (2240)
++++++.+...++ .|+++...+
T Consensus 602 ---------------KgT~Ddy~Wp~l~-~KL~vl~s~ 623 (689)
T KOG1000|consen 602 ---------------KGTADDYMWPMLQ-QKLDVLGSV 623 (689)
T ss_pred ---------------cCchHHHHHHHHH-HHHHHHhhc
Confidence 4789999998764 467655444
|
|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-50 Score=503.79 Aligned_cols=388 Identities=40% Similarity=0.617 Sum_probs=344.4
Q ss_pred ccCCCccC--CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000099 990 MRQPSMLR--AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 990 ~~qPs~L~--ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (2240)
..+|..+. ++.|.+||.+|++|+...+..+-.+|||||||+|||++++.++..++......+|+||++|.+++.+|..
T Consensus 283 ~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~ 362 (696)
T KOG0383|consen 283 EDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWER 362 (696)
T ss_pred ccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCC
Confidence 46787776 5899999999999999999999999999999999999999999999887788899999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHH-------------------HhhcCCcEEEEcHHHHHHhhhhccccCcceEec
Q 000099 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQE-------------------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIII 1128 (2240)
Q Consensus 1068 Ef~Kw~PslkVvvy~GskdeRk~l~~qe-------------------i~~~~fdVVITTYE~L~kD~s~L~kikWd~VII 1128 (2240)
|+.-|+|.+.++.|.|+.+.|.-+.... .....|+|.+++|+++..+...+..+.|.++|+
T Consensus 363 e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~liv 442 (696)
T KOG0383|consen 363 EFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLIV 442 (696)
T ss_pred chhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeEe
Confidence 9999999999999999988765442111 134578999999999999999999999999999
Q ss_pred ccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000099 1129 DEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1208 (2240)
Q Consensus 1129 DEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l 1208 (2240)
||+|+++|..+++.+.+..+...++++|||||++|++.+|+++|+||.|+.|++...|.+.|..-
T Consensus 443 de~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~--------------- 507 (696)
T KOG0383|consen 443 DEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI--------------- 507 (696)
T ss_pred echhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh---------------
Confidence 99999999999999999999999999999999999999999999999999999988888776421
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHH
Q 000099 1209 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1288 (2240)
Q Consensus 1209 ~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~a 1288 (2240)
.....+..||.++.|++|||+|.||.+.+|.|.+.++.+.|+..|+.+|+.++......+.. .
T Consensus 508 ---~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~--------------~ 570 (696)
T KOG0383|consen 508 ---SCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA--------------G 570 (696)
T ss_pred ---hHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh--------------c
Confidence 11234788999999999999999999999999999999999999999999987654222111 0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCccc-----cchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHH
Q 000099 1289 KVYKTLNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEY 1363 (2240)
Q Consensus 1289 k~~~sL~nilmqLRKICNHP~L~~p~~~~-----ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~ 1363 (2240)
..--.+.|++|+|||+|+|||++...... .....++..++|+.+|..+++++...|||||||+||+.++|+|+++
T Consensus 571 ~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~ 650 (696)
T KOG0383|consen 571 VHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDY 650 (696)
T ss_pred chhHHHHHHHHHHHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHH
Confidence 12346789999999999999998652111 1234578999999999999999999999999999999999999999
Q ss_pred HHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccccc
Q 000099 1364 LQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRG 1410 (2240)
Q Consensus 1364 L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeG 1410 (2240)
|...+ .|.|+||..+..+|+.+|++||.+++.-||||+||+|||+|
T Consensus 651 ~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 651 LTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999 99999999999999999999999999999999999999998
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=499.58 Aligned_cols=917 Identities=28% Similarity=0.229 Sum_probs=674.8
Q ss_pred CCCCccccccCCCCCCcccccccCccCcchHHHHHHHHhhhhcchHHHHhhcCCCcc-hhhhhcccCCCCcccCCCCCCC
Q 000099 8 SRNRAASTSSAASPSSSSSAVSTPHLGFDSLQQQQQHQQQQQRQPFQQQILRKPDGN-EAILAYQVGSLPGLMGGGNFAS 86 (2240)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (2240)
..+++.|+++|+++.+..+..+.++- +..|+++. +|+.-..-|+|.++..++| +...+|++|+.++|+++++|.+
T Consensus 14 ~~~~~~s~~~a~~~~sr~~~l~~~~~---~~~~~~~~-q~q~~~~~q~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~ 89 (1157)
T KOG0386|consen 14 PAGRTRSTISALSPLSRSSPLQQQQQ---QAVQQQQP-QQQLASRQQQQQHRPLDTNLENMFAYQPGGVQLMMGGGNFLS 89 (1157)
T ss_pred ccchhHHHHHhhhhhhhcCCCchhhH---HHHhhhhh-hhhhccHHHHhccCCCCCCcccccccCCCchhhccccccccC
Confidence 34777788888876665554443210 01111110 1111123366778888999 8899999999999999999999
Q ss_pred CCCCCCCCcchhhhhhHHhhhhhhhhccccccc-----cccccccHHHHHHHHHHHHHHhhhhhhHhHHhhhh--hcCCC
Q 000099 87 PPGSMQPPQQSRKFFDFAQQHAISQESQNRSQG-----VEHQLLNPVHQAYMQYALQAQQKSASVLQSQQQAK--LGMLG 159 (2240)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 159 (2240)
+|++|++|+++|.||...++.+..+.-.+..++ .-++..|++|++|+|++++++.|+. |+++. |||++
T Consensus 90 ~p~~~~~~~~~r~~~~sp~~~~~~q~~~~~~~~~~~~~l~~~~~~~~q~~~i~~~~~~~lq~~-----q~~~~~~~~~~~ 164 (1157)
T KOG0386|consen 90 SPGSMQMPQQSRNFFESPQQPQQQQQQGSSTQEGKITPLDQQNINPMQQARIQFRMQAQLQEL-----QQLARSLMGELK 164 (1157)
T ss_pred CCCcccccCCCcccccCCCchhhhcccccccCcCccccCCcccccHHHHHHHHHHHHHHHHHH-----HHhhhcchHHHh
Confidence 999999999999999988765444443333333 4578999999999999999999887 77777 99999
Q ss_pred CCC-CcchhhhccchhhHHhhhhhhhhhhhhccCCCCch--hhhchhhhccCcccc----CccccCCCCCCCCCCcCccC
Q 000099 160 PAS-GKDQDMRMGNLKMQELISMQSANQAQASSSKNSSE--QFGRGEKQMEQPQQQ----VSDQKGEPKPPSQQTLGGQG 232 (2240)
Q Consensus 160 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 232 (2240)
.++ ++|++.||+++.||.. ....++-.++++++.+-. .|.|++.|+++.--. --.||.|.+.- ..+..+++
T Consensus 165 ~~a~~e~~~lrl~~~q~qlr-~~~~~~~~~~~~~~~~~n~~~~~R~~~q~~~~~r~te~Le~qqr~e~erk-~r~~~~~~ 242 (1157)
T KOG0386|consen 165 SSAVGEDQALRLLMLQMQLR-NPVSQPLRRDSSSETALNPKAFKRGKRQTLSEARLTEKLEKQQRLETERK-RRVKHGQF 242 (1157)
T ss_pred hhhhhhhHHHHhHHHHHHHh-hhhhcccccccccccccCHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 887 9999999999999987 344445567778877777 899999998887611 11233322211 56677999
Q ss_pred CCCccccccchhhHHhHHhhhhcchhHHHHHH---HHHHHhccCCCCCcccHhHHHHHhHhHHHHHHhhcccccCCCCCC
Q 000099 233 MAANIIRPMQAAQHQQSIQNAAGNQLAMAAQL---QAWALERNIDLSQPANASLIAQLIPIMQSRIVANHKANESNMGAP 309 (2240)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (2240)
|++++++|++.++.|+..+|+++++.+.++|| ++|+++++||.++++|++.|.+ .-|.+|.++.++.+.+..++
T Consensus 243 l~~~~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~~r~ek~r~~~Lk~---~DeE~Y~kl~dq~Kd~Rl~~ 319 (1157)
T KOG0386|consen 243 LPGNLIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRIDRIEKERASALKH---NDEEGYRKLQDQKKDNRLSQ 319 (1157)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHH---hhHHHHHHHHhhccccHHHH
Confidence 99999999999999999999999999999999 7799999999999999888776 46779999999999999999
Q ss_pred CCCCCCCCccccccCccCCCC--CCCCCCCCccCCCCCCCCC---CCCCCCCCCCCcccccccccchhhcccccccCcCC
Q 000099 310 SSPVPVSKQQVTSPTIAGENS--PHANSSSDVSGQSGSAKAR---PTVSPSPLGSTTSAAVVNNVNNISLQQFSVHGRDN 384 (2240)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (2240)
.-..+.+....-+.+|-.+.+ +|+++.+|++++++.+|++ .......+-++..+-+.+ ..+|.+++.|++.
T Consensus 320 LL~qt~~yl~sL~s~Vk~qk~~~~~~~~~~d~~~i~~~ak~~~~d~~~s~~~Yys~AH~I~E~----v~~Qps~l~GG~L 395 (1157)
T KOG0386|consen 320 LLSQTDSYLPSLSSVVKGQKSENPDANSASDISGISGSAKADVDDHAESNGSYYSTAHPIKEN----VAKQPSSLQGGEL 395 (1157)
T ss_pred hhhhhhHHHHHHHHHHHHhhccccccchhhhhhhhhhhhcchhhhhhhcchhHHHhcchhhhc----cccCcchhcCCCC
Confidence 999888888777777878887 9999999999999999999 666666666776666555 3479999999986
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCchhhHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCC
Q 000099 385 QVPSRQPVAIGNGLPPIHPPQTSLNMTPGVDQPLPV--KNSSGPENSQMQYLRQLNRSSPQSAIPSSDGSSANNFSSQGG 462 (2240)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (2240)
..-....+---++++.-|+.+-.+.-+ ++....-+ .-.---|..+|+-.++++-+.+.....++++.--+- +...-
T Consensus 396 k~YQl~GLqWmVSLyNNnLNGILADEM-GLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaP-Sv~~i 473 (1157)
T KOG0386|consen 396 KEYQLHGLQWMVSLYNNNLNGILADEM-GLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAP-SVQKI 473 (1157)
T ss_pred chhhhhhhHHHhhccCCCcccccchhc-ccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhcccccc-ceeee
Confidence 554444444445555556666554431 22211100 111234666777777787777777777776654441 01111
Q ss_pred CCCCCCcccCCcchhHHHHHHHHHHHhhccccCCCCChHHHHHhcCCCccccccccccccccccccccCCCCCCcchhhh
Q 000099 463 LATQMPQQRLGFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAIVPPSLELQQQPAQQQFLPAAVNNQDRVSGKIAEDQ 542 (2240)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (2240)
.-.+.|+.|.||+++|+| .|.++|+|++.+.+. +.+||..|.+++...+ ++....++...-.+...+ --..+
T Consensus 474 ~YkGtp~~R~~l~~qir~-gKFnVLlTtyEyiik---dk~lLsKI~W~yMIID---EGHRmKNa~~KLt~~L~t-~y~~q 545 (1157)
T KOG0386|consen 474 QYKGTPQQRSGLTKQQRH-GKFNVLLTTYEYIIK---DKALLSKISWKYMIID---EGHRMKNAICKLTDTLNT-HYRAQ 545 (1157)
T ss_pred eeeCCHHHHhhHHHHHhc-ccceeeeeeHHHhcC---CHHHHhccCCcceeec---ccccccchhhHHHHHhhc-cccch
Confidence 222778999999999999 999999999999988 9999999999998888 777777777766666655 45566
Q ss_pred hcccccCCcccccccccCCCCCcccccccCCCCCccCC-CccCCcccc--CCCccccCCCCccccCCcc-cccChhhhhh
Q 000099 543 LRHLESNGKDAQAVSSSNVQSLPKEEAYAGDDKAAVSP-VGQGMSAVT--KEPAPVVVPGKEEQQAPVS-SVKSDQEVEC 618 (2240)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 618 (2240)
.|-++.++ .+|.--.-++..+...+....+...+-.. .-+.+.+.. .+-......-+.++...++ +++..+.+..
T Consensus 546 ~RLLLTGT-PLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKke 624 (1157)
T KOG0386|consen 546 RRLLLTGT-PLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKE 624 (1157)
T ss_pred hhhhhcCC-hhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHH
Confidence 77777776 66665555566666665555544333322 111222222 2222222233344555566 8888888888
Q ss_pred cccccccccCCCCCCCCccCC--CCCccccccccCCCCCccCCCCCCcccccccCCCCCCCCccccccCCCCccccccCC
Q 000099 619 GLLRTQQQSDFPADRGKSVAP--QVSACDAVQVKKPAQATTALQPKDVGAARKYHGPLFDFPFFTRKHDSVGSTAMVNSS 696 (2240)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~l~~~~~~~~k~~~~~~~~~~~~~ 696 (2240)
.-+..| |-..+.+|.+.+ |..-+ +.....+..+.|.+..+.|.++|++++.+.||+..-+.. ..|-+
T Consensus 625 VE~~LP---dKve~viKC~mSalQq~lY-------~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~l-f~~ve 693 (1157)
T KOG0386|consen 625 VEQELP---DKVEDVIKCDMSALQQSLY-------KQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYL-FANVE 693 (1157)
T ss_pred HhhhCc---hhhhHhhheehhhhhHhhh-------HHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchh-hhhhc
Confidence 888877 455556665543 22222 233334445667777899999999999999999988444 21456
Q ss_pred CCcccccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCChhHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 000099 697 NNLTLAYDVKDLLSEEGLEVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQEI 776 (2240)
Q Consensus 697 ~~~~~~~d~~~~~~~~~~~~~~~~R~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ie~k~l~ll~~q~~lr~~~~~~~~~~ 776 (2240)
.+...-+|+.+|+...++.-+-.+++--|+.....+......+++.+.+...+.++-+++..|+-|-+.+++.. +.+.
T Consensus 694 ~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~--ll~~ 771 (1157)
T KOG0386|consen 694 NSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGD--LLEI 771 (1157)
T ss_pred cccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHH--HHHH
Confidence 77778888899999999987777788888888887777777788889999999999999999999999999887 6777
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hhh
Q 000099 777 MAMPDRQYRKFVRLCERQRVELMRQVQTSQKAMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILRE-FSK 855 (2240)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~~-~~k 855 (2240)
..+|++.|..|...|.+.++.+-.|........+.+....+..|+++..|.+|..++.+..+..+|.++|++++++ +.|
T Consensus 772 FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~K 851 (1157)
T KOG0386|consen 772 FNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYK 851 (1157)
T ss_pred hcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHh
Confidence 8899999999999998888888777655555555666667888999999999999999999999999999999988 778
Q ss_pred hhhHHHHHHHHHhhhchHHHHHHHHHHhhcCCCcc----hHHHHHHHHHhHhhhHH---HHHHhhhhhHHhhhhHH----
Q 000099 856 RKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGD----AAERYAVLSSFLTQTEE---YLYKLGSKITAAKNQQE---- 924 (2240)
Q Consensus 856 r~~~~~~~rl~~lk~~d~e~y~~ll~~~k~~~~~d----~~~r~~~l~~LL~qte~---~l~~l~~~v~~~k~~q~---- 924 (2240)
...+.+-.++.++.+++.+.|++++.++....+++ ...+++.|..+|.++|+ |+++|+......++.+.
T Consensus 852 l~~d~kviqag~fdn~st~~eR~~~Le~~l~~~~~~~~~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~~~k~r 931 (1157)
T KOG0386|consen 852 LDVDGKVIQAGKFDNKSTAEEREMFLEQLLEMEGDEEEEEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQEKKPR 931 (1157)
T ss_pred cCchHhhhhcccccCCCcHHHHHHHHHHHHhCCCccccccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhccccch
Confidence 88888888999999999999999987765555554 55577789999999999 99999988876666555
Q ss_pred -HHHHHHHHHHHHHhcC---CCHHHHH----HHHHhhhhhHHhhhhhccc
Q 000099 925 -VEEAANAAAAAARLQG---LSEEEVR----SAAACAGEEVMIRNRFLEM 966 (2240)
Q Consensus 925 -~~~~~~~~~~~~r~~g---l~~ee~~----~~~~~~~ee~~i~~~f~e~ 966 (2240)
+++....+....+..+ +++++.. ....|...++.+.+.+.++
T Consensus 932 l~ee~e~p~~i~~~~~~~~~~~~~~~~~~~~~rg~r~Rkev~y~d~~te~ 981 (1157)
T KOG0386|consen 932 LVEEAELPADIYKRDQGVERLSEEEEEEKILGRGRRARKEVVYSDRLTEM 981 (1157)
T ss_pred hhhhhhcHHHHHhcchhhhhhhhhhhhhccccccccccceeecccccchh
Confidence 4554444444445444 3433333 2223444455555544443
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-44 Score=456.71 Aligned_cols=443 Identities=30% Similarity=0.442 Sum_probs=349.9
Q ss_pred HHHHHHHHHHHHhh-cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechHHHHHHHHHHHHHCC-
Q 000099 1003 DYQIVGLQWMLSLY-NNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNAVLVNWKSELHKWLP- 1074 (2240)
Q Consensus 1003 PYQleGLqwLlsL~-~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~SLL~QW~~Ef~Kw~P- 1074 (2240)
.+|..+..|+-... ..-.+||+||+||+|||+++|++++....... ..+..|||||.+++.+|..|+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 44444444443332 23467899999999999999999876543222 45678999999999999999966654
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceE
Q 000099 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR 1153 (2240)
Q Consensus 1075 -slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~R 1153 (2240)
.+.+.+|+| |.+. ......++||||||..+.. ..+..+.|..||+||||.++|..++.++++..+.+.+|
T Consensus 215 ~~l~v~v~~g----r~kd---~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~R 285 (674)
T KOG1001|consen 215 DKLSIYVYHG----RTKD---KSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYR 285 (674)
T ss_pred cceEEEEecc----cccc---cchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheeecccee
Confidence 467888888 1111 2234577899999999865 56677999999999999999999999999999999999
Q ss_pred EEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 000099 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233 (2240)
Q Consensus 1154 LLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlK 1233 (2240)
|.|||||+||++.|||+++.|+.-..|.....|...+..|+..+.. .....++..+|.++++||+|
T Consensus 286 WcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~--------------~~~~k~l~~~L~~v~lrrtK 351 (674)
T KOG1001|consen 286 WCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY--------------KEGVKTLQGILKKVMLRRTK 351 (674)
T ss_pred eeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH--------------HHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999988888765411 23467888999999999988
Q ss_pred hhh-----ccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000099 1234 EDV-----EGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (2240)
Q Consensus 1234 kDV-----ekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP 1308 (2240)
..- .-.||++...++.|.++..++.+|..+............... .....|..+.-.+.+||++|+||
T Consensus 352 ~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~-------~~~~~Y~~~l~~lLrlrq~c~h~ 424 (674)
T KOG1001|consen 352 EMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEG-------TVSSTYAFFLKNLLRLRQACDHS 424 (674)
T ss_pred cccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhc-------hhhhhHHHHHHHHHHHHHHccch
Confidence 632 236999999999999999999999988765433222111111 11234667777888999999999
Q ss_pred CCCCCCccc-----------------c-----------chhhHhh-----------------------------------
Q 000099 1309 LLNYPYFSD-----------------L-----------SKDFLVK----------------------------------- 1325 (2240)
Q Consensus 1309 ~L~~p~~~~-----------------l-----------s~d~Lir----------------------------------- 1325 (2240)
+++...... + ....++.
T Consensus 425 ~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l 504 (674)
T KOG1001|consen 425 LLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL 504 (674)
T ss_pred HhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence 874311000 0 0000011
Q ss_pred ---------------cccHHHHHHHHHHHHHhcCC-eEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHH
Q 000099 1326 ---------------SCGKLWILDRILIKLQRTGH-RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1326 ---------------sSGKLelLdrIL~kL~atGh-KVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~ 1389 (2240)
.+.|+..+..+|........ ++|||||++.++++++..|...++.+.+++|.++...|.+.+..
T Consensus 505 ~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~ 584 (674)
T KOG1001|consen 505 LSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTD 584 (674)
T ss_pred hhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcc
Confidence 13455555555554333333 99999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhc
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELR 1469 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~l 1469 (2240)
|+ .+..+.|+|+|.+|||.||||+.|++||++|++|||..+.||++|+|||||+++|.|++|+.
T Consensus 585 ~~-~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i--------------- 648 (674)
T KOG1001|consen 585 FP-CDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFII--------------- 648 (674)
T ss_pred cc-cCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehh---------------
Confidence 99 58889999999999999999999999999999999999999999999999999999999954
Q ss_pred cCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHH
Q 000099 1470 SGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEV 1509 (2240)
Q Consensus 1470 s~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkV 1509 (2240)
.++||++|++ +++.|..+.+..
T Consensus 649 -----------------~dtveer~l~-iq~~K~~~~~~a 670 (674)
T KOG1001|consen 649 -----------------KDTVEERILK-IQEKKREYNASA 670 (674)
T ss_pred -----------------hhccHHHHHH-HHHHHHHHHhhh
Confidence 4799999997 788888776544
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=380.62 Aligned_cols=280 Identities=37% Similarity=0.685 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHhh---------cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCC--CCeEEEechHHHHHHHHHHHHH
Q 000099 1004 YQIVGLQWMLSLY---------NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNY--GPHLIIVPNAVLVNWKSELHKW 1072 (2240)
Q Consensus 1004 YQleGLqwLlsL~---------~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~--GP~LIVVP~SLL~QW~~Ef~Kw 1072 (2240)
||+.||.||+..+ ....+||||||||+|||+++++++.++....... .++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7788899999999999999999999887644333 3699999999999999999999
Q ss_pred C-C-CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHH-----HhhhhccccCcceEecccccccCCchhHHHHHh
Q 000099 1073 L-P-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM-----YDRSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (2240)
Q Consensus 1073 ~-P-slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~-----kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaL 1145 (2240)
+ + .+++++|.|....+... ......++|+|+||+.+. .....+..++|++|||||+|+++|..+..+.++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l 157 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRLS---KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKAL 157 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHTT---SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHH
T ss_pred ccccccccccccccccccccc---ccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccc
Confidence 9 4 68888888876222211 223567899999999999 667788888999999999999999999999999
Q ss_pred hccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000099 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (2240)
Q Consensus 1146 k~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr 1225 (2240)
..+.+.++|+|||||+.|++.|||.+++||.|..+.+...|.++|..+ ..........+|..++.
T Consensus 158 ~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~---------------~~~~~~~~~~~L~~~l~ 222 (299)
T PF00176_consen 158 RKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP---------------DKENSYENIERLRELLS 222 (299)
T ss_dssp HCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH---------------HHTHHHHHHHHHHHHHC
T ss_pred cccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh---------------ccccccccccccccccc
Confidence 999999999999999999999999999999999999999999988544 22233445788999999
Q ss_pred HHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1226 PFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
+|++||+++|+...||+..+.++.|+|++.|+.+|+.+.......+.... .........+...+.+||++|
T Consensus 223 ~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~lr~~c 293 (299)
T PF00176_consen 223 EFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS---------RKKSKKLSSLLQILKRLRQVC 293 (299)
T ss_dssp CCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T-----------TCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc---------ccchhhHHHHHHHHHHHHHHh
Confidence 99999999999889999999999999999999999988665433332211 111235678889999999999
Q ss_pred CCCCC
Q 000099 1306 NHPLL 1310 (2240)
Q Consensus 1306 NHP~L 1310 (2240)
+||+|
T Consensus 294 ~hp~l 298 (299)
T PF00176_consen 294 NHPYL 298 (299)
T ss_dssp H-THH
T ss_pred CCccc
Confidence 99986
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=378.11 Aligned_cols=333 Identities=18% Similarity=0.281 Sum_probs=243.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--C
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--P 1074 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~--P 1074 (2240)
..+|||||.++|.++.. .....+|||+++||+|||++++++++.+ .+++|||||.. ++.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~~-~gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHh-cCCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 35899999999998863 1112579999999999999999888754 25899999977 5899999999997 3
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh----------hhhccccCcceEecccccccCCchhHHHHH
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD----------~s~L~kikWd~VIIDEAHrLKN~~SKlska 1144 (2240)
...+..|.|..... ......|+|+||+++..+ ...|....|++||+||||++.+ ....+.
T Consensus 326 ~~~I~~~tg~~k~~--------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~i 395 (732)
T TIGR00603 326 DSQICRFTSDAKER--------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRV 395 (732)
T ss_pred CceEEEEecCcccc--------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--HHHHHH
Confidence 45666777754321 123468999999998643 2345566899999999999954 345556
Q ss_pred hhccccceEEEeecCCCCCCHHHHHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 000099 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223 (2240)
Q Consensus 1145 Lk~Lks~~RLLLTGTPLQNnL~ELwSLLnFL-lP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhkl 1223 (2240)
+..+.+.+||+|||||++++ +.+..+++| .|.+|.- .|.+ +
T Consensus 396 l~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~--~~~e----------------------------------L 437 (732)
T TIGR00603 396 LTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWME----------------------------------L 437 (732)
T ss_pred HHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec--CHHH----------------------------------H
Confidence 77788999999999999877 334444443 3443310 0100 0
Q ss_pred hhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000099 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1303 (2240)
Q Consensus 1224 LrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRK 1303 (2240)
+. .+.|.+.....|+|+|++.....|.. ... .. +. .|
T Consensus 438 i~-----------~G~LA~~~~~ev~v~~t~~~~~~yl~--~~~--------~~--------------k~------~l-- 474 (732)
T TIGR00603 438 QK-----------KGFIANVQCAEVWCPMTPEFYREYLR--ENS--------RK--------------RM------LL-- 474 (732)
T ss_pred Hh-----------CCccccceEEEEEecCCHHHHHHHHH--hcc--------hh--------------hh------HH--
Confidence 00 12355666678999999865444421 100 00 00 00
Q ss_pred HcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHH
Q 000099 1304 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1383 (2240)
Q Consensus 1304 ICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eER 1383 (2240)
++ ....|+..+..++......++++||||.++..++.+...| +. ..|+|.|+..+|
T Consensus 475 ~~-------------------~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER 530 (732)
T TIGR00603 475 YV-------------------MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQER 530 (732)
T ss_pred hh-------------------hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHH
Confidence 00 1235888888888876678999999999999988888877 33 458999999999
Q ss_pred HHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC-ChhhHHHHhhhhhccCCcce-----EEEEEEeh
Q 000099 1384 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKRE-----VKVIYMEA 1454 (2240)
Q Consensus 1384 eeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW-NP~~d~QAiGRAhRIGQKKe-----V~VyrLvT 1454 (2240)
.+++++|+.+ +.+. +|+++++|++||||+.|++||++++++ |+..++||+||+.|.+.++. +.+|.|++
T Consensus 531 ~~il~~Fr~~-~~i~-vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs 605 (732)
T TIGR00603 531 MQILQNFQHN-PKVN-TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVS 605 (732)
T ss_pred HHHHHHHHhC-CCcc-EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEec
Confidence 9999999852 2334 466669999999999999999999986 99999999999999997765 67788876
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=365.28 Aligned_cols=431 Identities=19% Similarity=0.194 Sum_probs=267.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC--
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS-- 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Ps-- 1075 (2240)
.++|+||.+.+..++. .|+||+++||+|||++++.++..++. ...+++|||||+ .++.||..+|.+++..
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 3789999999988764 28999999999999999988887763 345799999998 5888999999988743
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchhHHHHHh---hcccc
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDL---DRYRC 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~SKlskaL---k~Lks 1150 (2240)
..++++.|......+ ...+...+|+|+|++.+..+. ..+....|++|||||||++.+..+..+.+- ...+.
T Consensus 87 ~~v~~~~g~~~~~~r----~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 87 EKIVVFTGEVSPEKR----AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred ceEEEEeCCCCHHHH----HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 477778875433221 122346799999999998763 334455799999999999986544332211 12245
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.++++|||||..+ ...+..+++.|....+..+..|...+...+... ...|.... .......++.+|..++.+
T Consensus 163 ~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~------~v~~~~v~-l~~~~~~i~~~l~~~~~~ 234 (773)
T PRK13766 163 PLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKV------KIEWVRVE-LPEELKEIRDLLNEALKD 234 (773)
T ss_pred CEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccc------eeEEEEeC-CcHHHHHHHHHHHHHHHH
Confidence 6699999999766 566666666664333222222221111111100 00000000 001234567777777777
Q ss_pred hhhhhhcc-CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchh---HHhhhhcC-hhhHHHHHHHHHHHHHHHHHHc
Q 000099 1231 RRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED---EKRRVQKN-PIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1231 RlKkDVek-dLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~---e~~~l~~~-~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
+++..... .++.....+....+...+..++..+............ ....+... ..........+...+..++..+
T Consensus 235 ~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~ 314 (773)
T PRK13766 235 RLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEA 314 (773)
T ss_pred HHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhc
Confidence 76654322 1222222222333344444444443221100000000 00000000 0000000111222222222222
Q ss_pred CCCCCCCC---Ccccc-------chhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhcCceEEe
Q 000099 1306 NHPLLNYP---YFSDL-------SKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (2240)
Q Consensus 1306 NHP~L~~p---~~~~l-------s~d~LirsSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~rGiky~r 1373 (2240)
.++..... .+.+. ....+....+|+..|.++|.++. ..+.||||||++..+++.|.++|...|+.+..
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~ 394 (773)
T PRK13766 315 RSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVR 394 (773)
T ss_pred cccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEE
Confidence 11100000 00000 00111234689999999999876 57899999999999999999999999999999
Q ss_pred ecCC--------CCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1374 IDGT--------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1374 LDGs--------Ts~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
++|. ++..+|..++++|+.++.+ +|++|+++++|+|++.|++||+||++||+..++||.||++|.|+
T Consensus 395 ~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-- 469 (773)
T PRK13766 395 FVGQASKDGDKGMSQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-- 469 (773)
T ss_pred EEccccccccCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC--
Confidence 9987 8889999999999976544 68999999999999999999999999999999999999999876
Q ss_pred eEEEEEEeh
Q 000099 1446 EVKVIYMEA 1454 (2240)
Q Consensus 1446 eV~VyrLvT 1454 (2240)
+.||.|++
T Consensus 470 -~~v~~l~~ 477 (773)
T PRK13766 470 -GRVVVLIA 477 (773)
T ss_pred -CEEEEEEe
Confidence 44555543
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=295.90 Aligned_cols=418 Identities=20% Similarity=0.218 Sum_probs=257.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~--Ps 1075 (2240)
.+-|.||...+...+. .|.+++.+||||||++|+.++++.+...+ |.+|+++|+. |+.|...-|.+++ |.
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFG--GKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcC--CeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 3689999999888775 48999999999999999999987665333 4899999965 8999999999986 55
Q ss_pred CeEEEEecch--hhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchh--HHHHHhhccc
Q 000099 1076 VSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES--VLARDLDRYR 1149 (2240)
Q Consensus 1076 lkVvvy~Gsk--deRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~S--KlskaLk~Lk 1149 (2240)
..++.+.|.. ++|. ..+.+.+|+|.|++.+.+|. ..+...++.+||+|||||.-...+ -+.+......
T Consensus 87 ~~i~~ltGev~p~~R~------~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 87 DEIAALTGEVRPEERE------ELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred hheeeecCCCChHHHH------HHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 7888888864 3443 33567799999999999884 456666899999999999865333 2333333334
Q ss_pred -cceEEEeecCCCCCCHHHHHHHHhhhcccccC----ChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000099 1150 -CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD----NRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (2240)
Q Consensus 1150 -s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~----S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklL 1224 (2240)
..+.|+||||| -++...+-..++-|.-+-.- ...+...+... ... ... .. ..-++...+...|..+|
T Consensus 161 k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~-~kv----e~i-kV-~lp~e~~~ir~~l~~~l 232 (542)
T COG1111 161 KNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKK-IKV----EWI-KV-DLPEEIKEIRDLLRDAL 232 (542)
T ss_pred cCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhcc-cee----EEE-ec-cCcHHHHHHHHHHHHHH
Confidence 44789999999 56677777777766443211 00111111110 000 000 00 00112223455566666
Q ss_pred hHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccC-chhHHhhhhc-----C-----hhhHHHHHHH
Q 000099 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD-PEDEKRRVQK-----N-----PIYQAKVYKT 1293 (2240)
Q Consensus 1225 rPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld-~~~e~~~l~~-----~-----~~~~ak~~~s 1293 (2240)
+|.+-. +++- -.....++. .++.+............. .......+.. + .....-+...
T Consensus 233 ~~~Lk~-L~~~--------g~~~~~~~~--~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~ 301 (542)
T COG1111 233 KPRLKP-LKEL--------GVIESSSPV--SKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRP 301 (542)
T ss_pred HHHHHH-HHHc--------CceeccCcc--cHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 654321 2211 011111111 122222221000000000 0000000000 0 0000001122
Q ss_pred HHHHHHHHHHHcCCCCC-------CCCCcccc-----chhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHH
Q 000099 1294 LNNRCMELRKTCNHPLL-------NYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDI 1359 (2240)
Q Consensus 1294 L~nilmqLRKICNHP~L-------~~p~~~~l-----s~d~LirsSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDi 1359 (2240)
+.+-+.+|..-|..-.. ..+++... .....-...+|++.|..||.+.. ..+.|||||++|+++++.
T Consensus 302 ~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~ 381 (542)
T COG1111 302 FYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEE 381 (542)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHH
Confidence 22223333333322000 00000000 00111123579999999999987 567899999999999999
Q ss_pred HHHHHHhcCceEE-eecC--------CCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhh
Q 000099 1360 LEEYLQWRQLVYR-RIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430 (2240)
Q Consensus 1360 Led~L~~rGiky~-rLDG--------sTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~ 1430 (2240)
|.++|...|+... ++-| +|++++..++|+.|+.++.+ +|++|.+|.+|||++++|.|||||+.-++..
T Consensus 382 i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR 458 (542)
T COG1111 382 IVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIR 458 (542)
T ss_pred HHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecCCcHHHH
Confidence 9999999988875 6655 59999999999999986655 7999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCcceEEEEEEeh
Q 000099 1431 EEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1431 d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.+||.||++|- +.-+||.|++
T Consensus 459 ~IQR~GRTGR~---r~Grv~vLvt 479 (542)
T COG1111 459 SIQRKGRTGRK---RKGRVVVLVT 479 (542)
T ss_pred HHHhhCccccC---CCCeEEEEEe
Confidence 99999999995 3334444443
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-28 Score=306.53 Aligned_cols=336 Identities=17% Similarity=0.204 Sum_probs=228.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--C
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--P 1074 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~--P 1074 (2240)
.++||+||.+++..++. +.+|||..+||+|||++++.++.+++. ...+++|||||+. |+.||..+|.+|. +
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~--~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLE--NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 35899999999987765 567899999999999988776665554 2334899999975 8899999999986 3
Q ss_pred CCeE-EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc-ccce
Q 000099 1075 SVSC-IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQR 1152 (2240)
Q Consensus 1075 slkV-vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks~~ 1152 (2240)
...+ .++.|... ....+|+|+|++.+.+....+ ...|++|||||||++... .+...+..+ ++.+
T Consensus 186 ~~~~~~i~~g~~~-----------~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~ 251 (501)
T PHA02558 186 REAMHKIYSGTAK-----------DTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGK--SLTSIITKLDNCKF 251 (501)
T ss_pred ccceeEEecCccc-----------CCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccch--hHHHHHHhhhccce
Confidence 3333 34444321 134689999999998654322 137899999999999753 344555666 5778
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
+++|||||..... ..+.++.++.|-.. .. . ...++
T Consensus 252 ~lGLTATp~~~~~-~~~~~~~~fG~i~~---------------~v------~---------------~~~li-------- 286 (501)
T PHA02558 252 KFGLTGSLRDGKA-NILQYVGLFGDIFK---------------PV------T---------------TSQLM-------- 286 (501)
T ss_pred EEEEeccCCCccc-cHHHHHHhhCCceE---------------Ee------c---------------HHHHH--------
Confidence 9999999954332 12222222211110 00 0 00000
Q ss_pred hhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000099 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~ 1312 (2240)
+ ...+.+.....+.+..+......+ .... +.. .+.
T Consensus 287 -~--~g~l~~~~~~~v~~~~~~~~~~~~---------------------~~~~-----~~~------~~~---------- 321 (501)
T PHA02558 287 -E--EGQVTDLKINSIFLRYPDEDRVKL---------------------KGED-----YQE------EIK---------- 321 (501)
T ss_pred -h--CCCcCCceEEEEeccCCHHHhhhh---------------------cccc-----hHH------HHH----------
Confidence 0 011222222333333332111000 0000 000 001
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhc
Q 000099 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (2240)
Q Consensus 1313 p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs 1392 (2240)
.+.....+..++..++..+...++++||||..+.+++.|.+.|...|+.+..++|+++.++|..+++.|+.
T Consensus 322 ---------~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~ 392 (501)
T PHA02558 322 ---------YITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEG 392 (501)
T ss_pred ---------HHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhC
Confidence 11122345566667777777788999999999999999999999999999999999999999999999985
Q ss_pred CCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc-eEEEEEEeh
Q 000099 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1454 (2240)
Q Consensus 1393 ~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK-eV~VyrLvT 1454 (2240)
....|+|.|++.+++|+|++.+|+||+++|+.+...++|++||++|.+..| .|.||.++.
T Consensus 393 --~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 393 --GKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred --CCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 344566666699999999999999999999999999999999999998776 588898853
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=300.57 Aligned_cols=349 Identities=21% Similarity=0.278 Sum_probs=253.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Psl 1076 (2240)
..+||+||.+++.-++..+.....||+..+||.|||+.++.++..+.. .+|||||.. ++.||.+.+.+++...
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 458999999999888776665888999999999999999998877653 499999976 7899998888887654
Q ss_pred -eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchhHHHHHhhccccce-
Q 000099 1077 -SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR- 1152 (2240)
Q Consensus 1077 -kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~- 1152 (2240)
.+..+.|..... ....|+|+||+++.+.. ..+...+|++||+|||||+.....+. .+..+...+
T Consensus 108 ~~~g~~~~~~~~~----------~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~--~~~~~~~~~~ 175 (442)
T COG1061 108 DEIGIYGGGEKEL----------EPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR--ILELLSAAYP 175 (442)
T ss_pred cccceecCceecc----------CCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH--HHHhhhcccc
Confidence 445555543221 11579999999998863 44555589999999999997544332 344455555
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
+|+|||||...+...+..++.++.|-++.- ..
T Consensus 176 ~LGLTATp~R~D~~~~~~l~~~~g~~vy~~------------------------------------------------~~ 207 (442)
T COG1061 176 RLGLTATPEREDGGRIGDLFDLIGPIVYEV------------------------------------------------SL 207 (442)
T ss_pred eeeeccCceeecCCchhHHHHhcCCeEeec------------------------------------------------CH
Confidence 999999997665444444444443322210 00
Q ss_pred hhhhc-cCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1233 VEDVE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1233 KkDVe-kdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
+..+. +.|.+.....+++.++......|..........+.. ....-.....
T Consensus 208 ~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~---------- 259 (442)
T COG1061 208 KELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA------------------RGTLRAENEA---------- 259 (442)
T ss_pred HHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh------------------hhhhhHHHHH----------
Confidence 11111 357788888899988888888776443221000000 0000000001
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
.........|+..+..++.... .+.++||||......+.|...|...++ +..++|.++..+|..+++.|+
T Consensus 260 --------~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr 329 (442)
T COG1061 260 --------RRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFR 329 (442)
T ss_pred --------HHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHH
Confidence 1112234567778888887766 789999999999999999999998888 889999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhc-cCCcceEEEEEEe
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR-IGQKREVKVIYME 1453 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhR-IGQKKeV~VyrLv 1453 (2240)
.++ ..+|++++++.+|+|++.|+++|+..+.-++..|.|++||+.| ...++.+.++.+.
T Consensus 330 ~g~---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~ 389 (442)
T COG1061 330 TGG---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYS 389 (442)
T ss_pred cCC---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEE
Confidence 865 3479999999999999999999999999999999999999999 5556666555543
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=308.62 Aligned_cols=275 Identities=27% Similarity=0.418 Sum_probs=202.2
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHH---------------HhCCCCCeEEEechHHHHHHHHHHHHHCCCC-eE
Q 000099 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLME---------------FKGNYGPHLIIVPNAVLVNWKSELHKWLPSV-SC 1078 (2240)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lle---------------~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Psl-kV 1078 (2240)
.+..+..+++||+||+|||+..+++...-.- .....|.+|||||++++.||-.||.+++++. ++
T Consensus 370 ~~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv 449 (1394)
T KOG0298|consen 370 DKKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKV 449 (1394)
T ss_pred CccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceE
Confidence 3445566799999999999998887643210 0113478999999999999999999999876 99
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----------------------hhccccCcceEecccccccCC
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----------------------SKLSKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----------------------s~L~kikWd~VIIDEAHrLKN 1136 (2240)
+.|.|-.... +.......++|||||||..++.+. +.|..+.|..||||||+-+..
T Consensus 450 ~~Y~Girk~~---~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 450 LLYFGIRKTF---WLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES 526 (1394)
T ss_pred EEEechhhhc---ccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc
Confidence 9999965432 122345678999999999997652 235556899999999999999
Q ss_pred chhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000099 1137 RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216 (2240)
Q Consensus 1137 ~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~li 1216 (2240)
..|..++.+..+.+.++|..||||+++ +.+|+.||+||.-..|+....|.+.+..++... ..
T Consensus 527 ssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r-----------------a~ 588 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR-----------------AK 588 (1394)
T ss_pred hHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH-----------------hh
Confidence 999999999999999999999999999 999999999999999999999988776554332 12
Q ss_pred HHHHHHHhhHHHHHhhhhhhcc--CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhH--Hh----hhhcChhhHH
Q 000099 1217 IHRLHQILEPFMLRRRVEDVEG--SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDE--KR----RVQKNPIYQA 1288 (2240)
Q Consensus 1217 i~RLhklLrPFmLRRlKkDVek--dLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e--~~----~l~~~~~~~a 1288 (2240)
-..+++++...+.|+.+-+|+. .+|+..+.+....+++.+..+|+..-..-........+ .. ..........
T Consensus 589 ~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~ 668 (1394)
T KOG0298|consen 589 CEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSP 668 (1394)
T ss_pred hhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCCh
Confidence 2357778888899999988876 47888888888888888877775331110000000000 00 0001111222
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC
Q 000099 1289 KVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1289 k~~~sL~nilmqLRKICNHP~L 1310 (2240)
-....+.+.+.+||++|+||..
T Consensus 669 ~~~a~i~~~l~rLRq~Cchplv 690 (1394)
T KOG0298|consen 669 QLLAIILKWLLRLRQACCHPLV 690 (1394)
T ss_pred hhHHHHHHHHHHHHHhhccccc
Confidence 3456778888999999999865
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-26 Score=291.54 Aligned_cols=316 Identities=20% Similarity=0.243 Sum_probs=217.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH-HHHHHh----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-YLMEFK----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa-~Lle~k----g~~GP~LIVVP~S-LL~QW~~Ef~Kw~ 1073 (2240)
++.|+|..++..++. +.+.|+..+||+|||++++..+. .+.... +....+|||||+. |+.||..++.+|.
T Consensus 152 ~pt~iQ~~aip~~l~----G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIALS----GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 689999999988776 77899999999999999866443 333211 1123479999987 6788999999987
Q ss_pred CC--CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCch--hHHHHHhhc
Q 000099 1074 PS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDR 1147 (2240)
Q Consensus 1074 Ps--lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~ 1147 (2240)
.. +++.+.+|......+.. ......+|+|+|++.|..... .+...++.+|||||||+|.... ..+.+.+..
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~---~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~ 304 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIY---ALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQ 304 (545)
T ss_pred cccCccEEEEeCCCCHHHHHH---HHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHh
Confidence 53 55666666544333321 223467999999998875532 2233468899999999997643 234445555
Q ss_pred ccc-ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1148 YRC-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1148 Lks-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
+.. ...|++|||.- .++-.+...+.. ..++....
T Consensus 305 ~~~~~q~l~~SAT~p----~~v~~l~~~l~~-------------~~~v~i~v---------------------------- 339 (545)
T PTZ00110 305 IRPDRQTLMWSATWP----KEVQSLARDLCK-------------EEPVHVNV---------------------------- 339 (545)
T ss_pred CCCCCeEEEEEeCCC----HHHHHHHHHHhc-------------cCCEEEEE----------------------------
Confidence 543 45788999941 111111110000 00000000
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
..+...........+.
T Consensus 340 -------g~~~l~~~~~i~q~~~--------------------------------------------------------- 355 (545)
T PTZ00110 340 -------GSLDLTACHNIKQEVF--------------------------------------------------------- 355 (545)
T ss_pred -------CCCccccCCCeeEEEE---------------------------------------------------------
Confidence 0000000000000000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHH
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReea 1386 (2240)
.+....|...|..+|..+...+.++||||+....++.|...|...|+.+..+||+++.++|..+
T Consensus 356 ----------------~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~i 419 (545)
T PTZ00110 356 ----------------VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWV 419 (545)
T ss_pred ----------------EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHH
Confidence 0111235556666676666578899999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
++.|+++... +||+|+++++|||++++++||+||+|+++..|+||+||++|.|.+..+..|
T Consensus 420 l~~F~~G~~~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~ 480 (545)
T PTZ00110 420 LNEFKTGKSP---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTF 480 (545)
T ss_pred HHHHhcCCCc---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 9999976555 799999999999999999999999999999999999999999988766544
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=281.46 Aligned_cols=311 Identities=18% Similarity=0.257 Sum_probs=219.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---Ps 1075 (2240)
++.|+|.+++..++. +.+.|+..+||+|||.+++..+...+........+|||||+. |..||..++.+++ ++
T Consensus 26 ~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 688999999998875 778999999999999987776666554333334689999976 6788998888764 56
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCch--hHHHHHhhcccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC- 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lks- 1150 (2240)
+++..++|+.....+. .......+|+|+|++.+..... .+.-.++++|||||||+|.+.. ..+...+..+..
T Consensus 102 ~~v~~~~Gg~~~~~~~---~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~ 178 (460)
T PRK11776 102 IKVLTLCGGVPMGPQI---DSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPAR 178 (460)
T ss_pred cEEEEEECCCChHHHH---HHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcc
Confidence 8888888876544332 2223678999999999976532 2333468999999999987543 234444445543
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
...|++|||+-. ++-.+...+ +..|....
T Consensus 179 ~q~ll~SAT~~~----~~~~l~~~~--------------~~~~~~i~--------------------------------- 207 (460)
T PRK11776 179 RQTLLFSATYPE----GIAAISQRF--------------QRDPVEVK--------------------------------- 207 (460)
T ss_pred cEEEEEEecCcH----HHHHHHHHh--------------cCCCEEEE---------------------------------
Confidence 457999999621 111111100 00000000
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
-......+......+.+
T Consensus 208 ---~~~~~~~~~i~~~~~~~------------------------------------------------------------ 224 (460)
T PRK11776 208 ---VESTHDLPAIEQRFYEV------------------------------------------------------------ 224 (460)
T ss_pred ---ECcCCCCCCeeEEEEEe------------------------------------------------------------
Confidence 00000000000111110
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
....|+..|..+|.. ....++||||+....++.+.+.|...++.+..+||+++..+|..+++.|
T Consensus 225 --------------~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F 288 (460)
T PRK11776 225 --------------SPDERLPALQRLLLH--HQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRF 288 (460)
T ss_pred --------------CcHHHHHHHHHHHHh--cCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 001144555555543 2356899999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+++... +||+|+++++|||++++++||+||.|.++..|+||+||++|.|....+.++
T Consensus 289 ~~g~~~---vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l 345 (460)
T PRK11776 289 ANRSCS---VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSL 345 (460)
T ss_pred HcCCCc---EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEE
Confidence 976555 799999999999999999999999999999999999999999987665544
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-26 Score=280.46 Aligned_cols=317 Identities=22% Similarity=0.280 Sum_probs=231.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH------hCCCCCeEEEechHH-HHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF------KGNYGPHLIIVPNAV-LVNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~------kg~~GP~LIVVP~SL-L~QW~~Ef~Kw 1072 (2240)
.+.|.|..+...++. +..+|....||+|||+..+..+...+.. ++....+||++|+.- ..|...++.++
T Consensus 113 ~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 677889888877776 8889999999999999988765544432 223334899999984 56677888888
Q ss_pred CCCCe--EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCC--chhHHHHHhh
Q 000099 1073 LPSVS--CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLD 1146 (2240)
Q Consensus 1073 ~Pslk--Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN--~~SKlskaLk 1146 (2240)
...+. +++++|+.....++. ......+|+|+|++.++... ..+...+..|+|+|||++|.. ....+-+.|.
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~---~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLR---DLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHH---HHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 76543 666666555444432 23456899999999998764 345555789999999999975 5567888888
Q ss_pred cc-ccce-EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000099 1147 RY-RCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (2240)
Q Consensus 1147 ~L-ks~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklL 1224 (2240)
.+ ++.+ .|+.|||= . .+
T Consensus 266 ~i~~~~rQtlm~saTw---------p--------------~~-------------------------------------- 284 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATW---------P--------------KE-------------------------------------- 284 (519)
T ss_pred hcCCCcccEEEEeeec---------c--------------HH--------------------------------------
Confidence 88 5554 67788871 0 00
Q ss_pred hHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000099 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (2240)
Q Consensus 1225 rPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKI 1304 (2240)
+|.+..+... .|-.+. +.... ....+..+.++-..
T Consensus 285 ----v~~lA~~fl~-~~~~i~-ig~~~---------------------------------------~~~a~~~i~qive~ 319 (519)
T KOG0331|consen 285 ----VRQLAEDFLN-NPIQIN-VGNKK---------------------------------------ELKANHNIRQIVEV 319 (519)
T ss_pred ----HHHHHHHHhc-CceEEE-ecchh---------------------------------------hhhhhcchhhhhhh
Confidence 0111111111 111111 10000 00001122233333
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH-hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHH
Q 000099 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR 1383 (2240)
Q Consensus 1305 CNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~-atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eER 1383 (2240)
|+ ...|...|..+|.+.. ..+.||||||++...++.|+..|+..++++..|||..++.+|
T Consensus 320 ~~-------------------~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 320 CD-------------------ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSER 380 (519)
T ss_pred cC-------------------HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHH
Confidence 32 2357888888888876 455699999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1384 ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1384 eeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
..+|+.|++++.. +|++|+++++|||+.++|+||+||+|-|...|+||+||++|.|++.....++
T Consensus 381 ~~~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tff 445 (519)
T KOG0331|consen 381 DWVLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFF 445 (519)
T ss_pred HHHHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEE
Confidence 9999999987776 8999999999999999999999999999999999999999999887765543
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=274.18 Aligned_cols=313 Identities=17% Similarity=0.187 Sum_probs=215.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH----hCCCCCeEEEechH-HHHHHHHHHHHHCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF----KGNYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~----kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P 1074 (2240)
+++++|.+++..++. +.+.|+..+||+|||++++..+...+.. ......+|||+|+. |+.||.+.+..|+.
T Consensus 23 ~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 23 RPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 688999999988875 6789999999999999987765544321 12234689999977 67788888877754
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhcc
Q 000099 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY 1148 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~L 1148 (2240)
++.+..++|+....... ......++|+|+|++.+.... ..+....+++|||||||+|.... ..+...+..+
T Consensus 99 ~~~~~v~~~~gg~~~~~~~---~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~ 175 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHA---EVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAET 175 (434)
T ss_pred cCCcEEEEEECCCCHHHHH---HHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhC
Confidence 46788888765543221 233457899999999887643 23334567899999999996533 2222223333
Q ss_pred c-cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhc-CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1149 R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS-QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1149 k-s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~-kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
. ....+++|||+-...+.+ |..++. .|.......
T Consensus 176 ~~~~q~~~~SAT~~~~~~~~------------------~~~~~~~~~~~i~~~~-------------------------- 211 (434)
T PRK11192 176 RWRKQTLLFSATLEGDAVQD------------------FAERLLNDPVEVEAEP-------------------------- 211 (434)
T ss_pred ccccEEEEEEeecCHHHHHH------------------HHHHHccCCEEEEecC--------------------------
Confidence 2 345789999973221111 111110 000000000
Q ss_pred HHHHhhhhhhccCCCCceEEE-EEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIV-LRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~v-V~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
........... +.+.
T Consensus 212 ----------~~~~~~~i~~~~~~~~------------------------------------------------------ 227 (434)
T PRK11192 212 ----------SRRERKKIHQWYYRAD------------------------------------------------------ 227 (434)
T ss_pred ----------CcccccCceEEEEEeC------------------------------------------------------
Confidence 00000000000 0000
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHH
Q 000099 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (2240)
Q Consensus 1306 NHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERee 1385 (2240)
....|+.+|..++.. ....++||||+....++.|...|...++.+..++|+++..+|..
T Consensus 228 -------------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~ 286 (434)
T PRK11192 228 -------------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNE 286 (434)
T ss_pred -------------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHH
Confidence 001244455554432 24579999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1386 aIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++.|+++... +|++|+++++|||++.+++||+||+|+++..|+||+||++|.|.+..+.++.
T Consensus 287 ~l~~f~~G~~~---vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~ 349 (434)
T PRK11192 287 AIKRLTDGRVN---VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLV 349 (434)
T ss_pred HHHHHhCCCCc---EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEe
Confidence 99999976555 7999999999999999999999999999999999999999999877765553
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=277.00 Aligned_cols=312 Identities=20% Similarity=0.241 Sum_probs=214.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechH-HHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNA-VLVNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (2240)
.+.|+|.+++..++. +.+.|+..+||+|||++++..+...+.... ....+|||||+. |+.||..++..|
T Consensus 23 ~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 688999999988775 778999999999999998877665543221 112589999976 678899999988
Q ss_pred CC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhh
Q 000099 1073 LP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLD 1146 (2240)
Q Consensus 1073 ~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk 1146 (2240)
+. .+.++.+.|+.....+. ......++|+|+|++.+.... ..+....+++|||||||++.... ..+...+.
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~---~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~ 175 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQM---MKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLA 175 (456)
T ss_pred hccCCCEEEEEECCcCHHHHH---HHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHH
Confidence 64 45666666665443322 122457899999999986542 22334468899999999986533 23334444
Q ss_pred cccc-ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000099 1147 RYRC-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (2240)
Q Consensus 1147 ~Lks-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr 1225 (2240)
.+.. ...|++|||.- +.+.++ ...+ +..|.....
T Consensus 176 ~l~~~~q~l~~SAT~~-~~~~~l---~~~~--------------~~~~~~i~~--------------------------- 210 (456)
T PRK10590 176 KLPAKRQNLLFSATFS-DDIKAL---AEKL--------------LHNPLEIEV--------------------------- 210 (456)
T ss_pred hCCccCeEEEEeCCCc-HHHHHH---HHHH--------------cCCCeEEEE---------------------------
Confidence 5543 34799999952 111111 1100 111100000
Q ss_pred HHHHHhhhhhhccCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000099 1226 PFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (2240)
Q Consensus 1226 PFmLRRlKkDVekdLP~KvE-~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKI 1304 (2240)
.... ....... .+..+.
T Consensus 211 ------~~~~---~~~~~i~~~~~~~~----------------------------------------------------- 228 (456)
T PRK10590 211 ------ARRN---TASEQVTQHVHFVD----------------------------------------------------- 228 (456)
T ss_pred ------eccc---ccccceeEEEEEcC-----------------------------------------------------
Confidence 0000 0000000 000000
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH
Q 000099 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1305 CNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe 1384 (2240)
...|..+|..++.. ...+++||||+....++.|.+.|...++.+..+||.++.++|.
T Consensus 229 ---------------------~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~ 285 (456)
T PRK10590 229 ---------------------KKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGART 285 (456)
T ss_pred ---------------------HHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Confidence 00122223333321 2346899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
.+++.|+++... +||+|+++++|||++++++||+||+|+++..|+|++||++|.|.+..+.++.
T Consensus 286 ~~l~~F~~g~~~---iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 286 RALADFKSGDIR---VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred HHHHHHHcCCCc---EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEe
Confidence 999999976554 7899999999999999999999999999999999999999999887766554
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=275.65 Aligned_cols=312 Identities=17% Similarity=0.200 Sum_probs=212.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-------~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (2240)
.+.|.|.+++..++. +.+.|+..+||+|||++++..+...+.... ....+|||||+. |+.||..++..
T Consensus 30 ~pt~iQ~~aip~il~----g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLTLA----GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHHhC----CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 678999999988775 788999999999999998766554332211 124689999977 67888888887
Q ss_pred HCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHh
Q 000099 1072 WLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDL 1145 (2240)
Q Consensus 1072 w~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaL 1145 (2240)
+.. ++++.+++|+....... ......++|+|+|++.+.... ..+...++.+|||||||++.+.. ..+...+
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~---~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~ 182 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQL---KVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLF 182 (423)
T ss_pred HhccCCceEEEEECCCCHHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHH
Confidence 753 56777777765433222 122356899999999997653 23444578999999999986533 2222333
Q ss_pred hccc---cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000099 1146 DRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (2240)
Q Consensus 1146 k~Lk---s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhk 1222 (2240)
..+. ....+++|||.-. .+.++. ..++..|.....
T Consensus 183 ~~~~~~~~~~~~l~SAT~~~-~~~~~~-----------------~~~~~~p~~i~v------------------------ 220 (423)
T PRK04837 183 RRMPPANQRLNMLFSATLSY-RVRELA-----------------FEHMNNPEYVEV------------------------ 220 (423)
T ss_pred HhCCCccceeEEEEeccCCH-HHHHHH-----------------HHHCCCCEEEEE------------------------
Confidence 3332 2335788999521 111110 000000000000
Q ss_pred HhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000099 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (2240)
Q Consensus 1223 lLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLR 1302 (2240)
..+ ..........+.
T Consensus 221 ----------~~~--~~~~~~i~~~~~----------------------------------------------------- 235 (423)
T PRK04837 221 ----------EPE--QKTGHRIKEELF----------------------------------------------------- 235 (423)
T ss_pred ----------cCC--CcCCCceeEEEE-----------------------------------------------------
Confidence 000 000000000000
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHH
Q 000099 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382 (2240)
Q Consensus 1303 KICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eE 1382 (2240)
+ .....|+..|..++.. ....++||||+....++.|..+|...|+.+..+||+++.++
T Consensus 236 ---------~-----------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~ 293 (423)
T PRK04837 236 ---------Y-----------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKK 293 (423)
T ss_pred ---------e-----------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhH
Confidence 0 0011244455555443 23579999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1383 ReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
|..+++.|+.++.. +|++|+++++|||++++++||+||+|+++..|+||+||++|.|++..+..|
T Consensus 294 R~~~l~~F~~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~ 358 (423)
T PRK04837 294 RLRILEEFTRGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISL 358 (423)
T ss_pred HHHHHHHHHcCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEE
Confidence 99999999986655 799999999999999999999999999999999999999999987766444
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=276.06 Aligned_cols=308 Identities=18% Similarity=0.201 Sum_probs=217.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
..++|+|.+++.-++. +.+.|+..+||+|||++++..+.. ..+.+|||+|+. |+.+|...+..+ ++.
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~--gi~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKAS--GIP 77 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHc--CCc
Confidence 3799999999998876 678999999999999887555432 245789999976 667888888764 455
Q ss_pred EEEEecchhh--HhHHHHHHHhhcCCcEEEEcHHHHHHhh---hhc-cccCcceEecccccccCCchh-------HHHHH
Q 000099 1078 CIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYDR---SKL-SKVDWKYIIIDEAQRMKDRES-------VLARD 1144 (2240)
Q Consensus 1078 Vvvy~Gskde--Rk~l~~qei~~~~fdVVITTYE~L~kD~---s~L-~kikWd~VIIDEAHrLKN~~S-------Klska 1144 (2240)
+..+.+.... +..++ .......++|+++|++.+.... ..+ ...++.+|||||||++..... .+...
T Consensus 78 ~~~l~~~~~~~~~~~i~-~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVL-TDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred EEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 5555554432 22222 2345667899999999986543 233 445789999999999864321 12222
Q ss_pred hhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000099 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (2240)
Q Consensus 1145 Lk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklL 1224 (2240)
...+.....++||||+-.....++...+++-.|.++.. .|.
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~------s~~--------------------------------- 197 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT------SFD--------------------------------- 197 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC------CCC---------------------------------
Confidence 23445566899999986655555555444333322110 000
Q ss_pred hHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000099 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (2240)
Q Consensus 1225 rPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKI 1304 (2240)
-|... ..+....
T Consensus 198 ---------------r~nl~-~~v~~~~---------------------------------------------------- 209 (470)
T TIGR00614 198 ---------------RPNLY-YEVRRKT---------------------------------------------------- 209 (470)
T ss_pred ---------------CCCcE-EEEEeCC----------------------------------------------------
Confidence 00000 0000000
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH
Q 000099 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1305 CNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe 1384 (2240)
...+..|..++.+ ...+.++||||..+..++.|...|...|+.+..+||+++.++|.
T Consensus 210 ----------------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~ 266 (470)
T TIGR00614 210 ----------------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARD 266 (470)
T ss_pred ----------------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHH
Confidence 0011111112211 12466789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
.+++.|..+... +|++|+++|+|||++++++||+||+|.++..|.|++||++|.|....+.+|+-
T Consensus 267 ~i~~~F~~g~~~---vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~ 331 (470)
T TIGR00614 267 DVHHKFQRDEIQ---VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYA 331 (470)
T ss_pred HHHHHHHcCCCc---EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEec
Confidence 999999976555 78999999999999999999999999999999999999999999888777654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-25 Score=281.43 Aligned_cols=312 Identities=18% Similarity=0.219 Sum_probs=214.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH-HHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA-VLVNWKSELHK 1071 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-------g~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (2240)
.+.|.|..++..++. +.+.|+..+||+|||+.++..+...+... .....+|||||+. |+.|+..++.+
T Consensus 31 ~ptpiQ~~~ip~~l~----G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVALP----GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 689999999998886 78899999999999999877665543221 1134789999987 67889899988
Q ss_pred HCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh---hccccCcceEecccccccCCch--hHHHHH
Q 000099 1072 WLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDRE--SVLARD 1144 (2240)
Q Consensus 1072 w~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrLKN~~--SKlska 1144 (2240)
|.. ++++..++|........ ......++|||+|++.|..... .+....+++|||||||+|.... ..+...
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~---~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~i 183 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQR---ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183 (572)
T ss_pred HhccCCceEEEEECCCCHHHHH---HHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHH
Confidence 875 35677777765443221 2234568999999999876532 2334467899999999986532 223333
Q ss_pred hhccc---cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000099 1145 LDRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (2240)
Q Consensus 1145 Lk~Lk---s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLh 1221 (2240)
+..+. ....+++|||.- +.+.++ .. .++..|.....
T Consensus 184 l~~lp~~~~~q~ll~SATl~-~~v~~l---~~--------------~~l~~p~~i~v----------------------- 222 (572)
T PRK04537 184 LRRMPERGTRQTLLFSATLS-HRVLEL---AY--------------EHMNEPEKLVV----------------------- 222 (572)
T ss_pred HHhcccccCceEEEEeCCcc-HHHHHH---HH--------------HHhcCCcEEEe-----------------------
Confidence 33343 345788999942 111111 10 00110000000
Q ss_pred HHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1222 klLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
.... .........+.+.
T Consensus 223 ----------~~~~---~~~~~i~q~~~~~-------------------------------------------------- 239 (572)
T PRK04537 223 ----------ETET---ITAARVRQRIYFP-------------------------------------------------- 239 (572)
T ss_pred ----------cccc---ccccceeEEEEec--------------------------------------------------
Confidence 0000 0000000000000
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHH
Q 000099 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381 (2240)
Q Consensus 1302 RKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~e 1381 (2240)
....|+.+|..+|.. ..+.++||||+....++.|.++|...++.+..+||.++..
T Consensus 240 -----------------------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~ 294 (572)
T PRK04537 240 -----------------------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQK 294 (572)
T ss_pred -----------------------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHH
Confidence 001133344444432 3467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1382 EReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+|..+++.|+++... +||+|+++++|||++.+++||+||.||++..|+|++||++|.|.+..+.++
T Consensus 295 eR~~il~~Fr~G~~~---VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~ 360 (572)
T PRK04537 295 KRESLLNRFQKGQLE---ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF 360 (572)
T ss_pred HHHHHHHHHHcCCCe---EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEE
Confidence 999999999976555 799999999999999999999999999999999999999999987766554
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-24 Score=278.71 Aligned_cols=314 Identities=15% Similarity=0.149 Sum_probs=218.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---Ps 1075 (2240)
++.|+|.+++..++. +.+.|+..+||+|||++++..+...+........+|||||+. |+.||..+|.+|. ++
T Consensus 28 ~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~ 103 (629)
T PRK11634 28 KPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 (629)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 799999999988875 678899999999999998666555444333445789999976 6788988887764 57
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhcccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC- 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lks- 1150 (2240)
+.++.++|+.....++. ......+|||+|++.+.... ..+.-..+.+|||||||.|.+.. ..+...+..+..
T Consensus 104 i~v~~~~gG~~~~~q~~---~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~ 180 (629)
T PRK11634 104 VNVVALYGGQRYDVQLR---ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 (629)
T ss_pred ceEEEEECCcCHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCC
Confidence 88887777754433321 22346899999999997653 22334467899999999986543 234445555543
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
...+++|||.- ..+.++. . .++..|....
T Consensus 181 ~q~llfSAT~p-~~i~~i~---~--------------~~l~~~~~i~--------------------------------- 209 (629)
T PRK11634 181 HQTALFSATMP-EAIRRIT---R--------------RFMKEPQEVR--------------------------------- 209 (629)
T ss_pred CeEEEEEccCC-hhHHHHH---H--------------HHcCCCeEEE---------------------------------
Confidence 34788999941 1111110 0 0000000000
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
+... ....|......+
T Consensus 210 -i~~~-~~~~~~i~q~~~-------------------------------------------------------------- 225 (629)
T PRK11634 210 -IQSS-VTTRPDISQSYW-------------------------------------------------------------- 225 (629)
T ss_pred -ccCc-cccCCceEEEEE--------------------------------------------------------------
Confidence 0000 000000000000
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
.+....|+..|.++|.. ....++||||.....++.|..+|...|+.+..++|.++..+|..++++|
T Consensus 226 ------------~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~F 291 (629)
T PRK11634 226 ------------TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERL 291 (629)
T ss_pred ------------EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHH
Confidence 00011244555555543 2346899999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+.+..+ |||+|+++++|||++.+++||+||+|.++..|+|++||++|.|....+.++..
T Consensus 292 r~G~~~---ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~ 350 (629)
T PRK11634 292 KDGRLD---ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVE 350 (629)
T ss_pred hCCCCC---EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEec
Confidence 976655 79999999999999999999999999999999999999999998776655543
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-24 Score=270.37 Aligned_cols=419 Identities=20% Similarity=0.222 Sum_probs=252.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
..||+||.+.++-++ +.|.|+|.+||+|||.+|+.++...++.... +.++++||+. |+.|....|..++-.-.
T Consensus 61 ~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred ccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 479999999998877 6789999999999999998888777765444 8999999987 77888888888775555
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccc---cCcceEecccccccC-C-chhHHHHHhhcc--cc
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK---VDWKYIIIDEAQRMK-D-RESVLARDLDRY--RC 1150 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~k---ikWd~VIIDEAHrLK-N-~~SKlskaLk~L--ks 1150 (2240)
+....|+...+... ...+...+|+|.|++.+..+...-.. -.|.+||||||||.. | +.+.+.+.+..+ ..
T Consensus 135 ~T~~l~~~~~~~~r---~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~ 211 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNR---GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQG 211 (746)
T ss_pred ceeeccCccCCCch---hhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhcc
Confidence 55555553322221 23356779999999999987533222 359999999999974 3 233444344333 33
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCCh--HHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR--KAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~--~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFm 1228 (2240)
.+.|+|||||= +++....+.+.-|... +.-+ .....-+.. .........+ +.. ....+..+|..+++|++
T Consensus 212 ~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~----lr~~~~i~v~-~~~-~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 212 NQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEE----LREHVQIPVD-LSL-CERDIEDPFGMIIEPLL 283 (746)
T ss_pred ccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHH----HhccCcccCc-HHH-hhhhhhhhHHHHHHHHH
Confidence 47899999997 7777777666655444 2110 011111100 0000001111 111 11234567888888887
Q ss_pred HHhhhhhhcc------------------CCCCceEEEEEeccCHHHHHHHH-HHHHccCcc-cCchhHHhhhhcChhhHH
Q 000099 1229 LRRRVEDVEG------------------SLPPKVSIVLRCRMSAIQSAIYD-WIKATGTLR-VDPEDEKRRVQKNPIYQA 1288 (2240)
Q Consensus 1229 LRRlKkDVek------------------dLP~KvE~vV~c~LS~~Qr~LYk-~L~~~~~l~-ld~~~e~~~l~~~~~~~a 1288 (2240)
.+-....+.. ..|......-.| +.......|. .++....++ ++....... .......+
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-f~~~~~~~~~~~ll~~~gir~~~~l~~~~~-f~~e~~~~ 361 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNC-FYALHLRKYNLALLISDGIRFVDALDYLED-FYEEVALK 361 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhh-HHHHHHHHHHHHHHhhcchhhHHHHhhhhh-hccccchh
Confidence 6655333221 011111111111 1111111111 011111111 000000000 00000000
Q ss_pred H----HH-HHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHh--cCCeEEEEecchhHHHHHH
Q 000099 1289 K----VY-KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR--TGHRVLLFSTMTKLLDILE 1361 (2240)
Q Consensus 1289 k----~~-~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~a--tGhKVLIFSQ~t~~LDiLe 1361 (2240)
+ .. ..+...++.+..-|.|-.. + .....+|++.|.++|.+... ...|+|||+.++..++.|.
T Consensus 362 k~~~~~~e~~~~~~~~~~m~~~~~l~~----------~-~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~ 430 (746)
T KOG0354|consen 362 KYLKLELEARLIRNFTENMNELEHLSL----------D-PPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALK 430 (746)
T ss_pred HHHHHHhcchhhHHHHHHHHhhhhhhc----------C-CCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHH
Confidence 0 00 0000001111111111000 0 01246799999999988765 4579999999999999999
Q ss_pred HHHH-h--cCceEEeecC--------CCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhh
Q 000099 1362 EYLQ-W--RQLVYRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN 1430 (2240)
Q Consensus 1362 d~L~-~--rGiky~rLDG--------sTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~ 1430 (2240)
.+|. . .|++...+.| +|++.+..++|+.|++|+.+ +|++|.+|.+|||+..||.||.||..-||..
T Consensus 431 ~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIr 507 (746)
T KOG0354|consen 431 KWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIR 507 (746)
T ss_pred HHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEEecCCccHHH
Confidence 9998 2 2555555555 68889999999999987766 7999999999999999999999999999999
Q ss_pred HHHHhhhhhccCCcceEEEEE
Q 000099 1431 EEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1431 d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
.+||+|| +|.-..+-|.++.
T Consensus 508 mIQrrGR-gRa~ns~~vll~t 527 (746)
T KOG0354|consen 508 MVQRRGR-GRARNSKCVLLTT 527 (746)
T ss_pred HHHHhcc-ccccCCeEEEEEc
Confidence 9999999 8877666665554
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=270.42 Aligned_cols=313 Identities=20% Similarity=0.256 Sum_probs=213.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEechH-HHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-------NYGPHLIIVPNA-VLVNWKSELHK 1071 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-------~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (2240)
.++++|.+++..++. +.+.|++.+||+|||+.++..+...+.... ....+|||+|+. |..||..++..
T Consensus 109 ~~~~iQ~~ai~~~~~----G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYTLA----GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 699999999987765 788999999999999988776555443221 134689999976 67788888887
Q ss_pred HCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCchh--HHHHHh
Q 000099 1072 WLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDL 1145 (2240)
Q Consensus 1072 w~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~S--KlskaL 1145 (2240)
++. ++.+..++|+.+..... .......++|+|+|++.+..... .+....+++|||||+|++.+... .+...+
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~--~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~ 262 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQL--KQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQII 262 (475)
T ss_pred hhccCCCEEEEEEccCChHHHH--HHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHH
Confidence 754 46777777765433222 12334568999999999965422 22223678999999999975332 233444
Q ss_pred hccc---cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000099 1146 DRYR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (2240)
Q Consensus 1146 k~Lk---s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhk 1222 (2240)
..+. ....+++|||.. +++.++ .. .|...|.....
T Consensus 263 ~~~~~~~~~q~i~~SAT~~-~~~~~~---~~--------------~~~~~~~~v~~------------------------ 300 (475)
T PRK01297 263 RQTPRKEERQTLLFSATFT-DDVMNL---AK--------------QWTTDPAIVEI------------------------ 300 (475)
T ss_pred HhCCCCCCceEEEEEeecC-HHHHHH---HH--------------HhccCCEEEEe------------------------
Confidence 4442 346899999942 111111 11 01111100000
Q ss_pred HhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000099 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (2240)
Q Consensus 1223 lLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLR 1302 (2240)
....+ ........+++
T Consensus 301 ---------~~~~~---~~~~~~~~~~~---------------------------------------------------- 316 (475)
T PRK01297 301 ---------EPENV---ASDTVEQHVYA---------------------------------------------------- 316 (475)
T ss_pred ---------ccCcC---CCCcccEEEEE----------------------------------------------------
Confidence 00000 00000000000
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHH
Q 000099 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLED 1382 (2240)
Q Consensus 1303 KICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eE 1382 (2240)
+....|..+|..++.. ....++||||+.+..++.|.++|...|+.+..++|.++.++
T Consensus 317 ---------------------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 373 (475)
T PRK01297 317 ---------------------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHK 373 (475)
T ss_pred ---------------------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHH
Confidence 0012233444444432 23469999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1383 ReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
|.++++.|++++.. +|++|+++++|||+.++|+||+||.|++...|+|++||++|.|....+.++
T Consensus 374 R~~~~~~Fr~G~~~---vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~ 438 (475)
T PRK01297 374 RIKTLEGFREGKIR---VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISF 438 (475)
T ss_pred HHHHHHHHhCCCCc---EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEE
Confidence 99999999976555 789999999999999999999999999999999999999999987665544
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=258.84 Aligned_cols=314 Identities=23% Similarity=0.247 Sum_probs=227.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH-HHHHC--CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE-LHKWL--PSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E-f~Kw~--Psl 1076 (2240)
.+.+.|.+++..++. +..+|.+.+||+|||+..+..|...+-..+..-.+||++|+..|.+...| |+.+. -++
T Consensus 83 ~PT~IQ~~aiP~~L~----g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVALG----GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchhhC----CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 466789999988886 88899999999999999888766544335555567999999977665554 66654 357
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---ccccCcceEecccccccCCc--hhHHHHHhhccccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lks~ 1151 (2240)
++.++.|+.+...... .....++|+|+|++.++++... |.-....|+|+|||+++.|. ...+.+.|+.+...
T Consensus 159 r~~~lvGG~~m~~q~~---~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~e 235 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQAN---QLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRE 235 (476)
T ss_pred EEEEEecCchHHHHHH---HhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCcc
Confidence 8889999888765543 2356789999999999987653 44446789999999999874 34677777777654
Q ss_pred e-EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1152 R-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1152 ~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
+ .+|+|||- ..+... |. +
T Consensus 236 rqt~LfsATM-t~kv~k----------------------------------------------------L~---r----- 254 (476)
T KOG0330|consen 236 RQTFLFSATM-TKKVRK----------------------------------------------------LQ---R----- 254 (476)
T ss_pred ceEEEEEeec-chhhHH----------------------------------------------------HH---h-----
Confidence 4 67788883 111111 11 0
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
..+ +-|. .|.-+ ..|..+ ..|.+. |+
T Consensus 255 ---asl--~~p~------~v~~s----~ky~tv-----------------------------------~~lkQ~----yl 280 (476)
T KOG0330|consen 255 ---ASL--DNPV------KVAVS----SKYQTV-----------------------------------DHLKQT----YL 280 (476)
T ss_pred ---hcc--CCCe------EEecc----chhcch-----------------------------------HHhhhh----eE
Confidence 000 0011 11100 011111 011110 11
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
+.+ ..-|-..|..||.++. |..+||||++....+.+.-+|+..|+....|+|.|++..|..+++.|
T Consensus 281 fv~------------~k~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~F 346 (476)
T KOG0330|consen 281 FVP------------GKDKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKF 346 (476)
T ss_pred ecc------------ccccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHH
Confidence 111 1224556777777654 68999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+++..+ +|++|++|++|||++.+|+||+||.|-+-..|+||.||+.|.|... .++.|++
T Consensus 347 k~~~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG--~~ItlVt 405 (476)
T KOG0330|consen 347 KAGARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSG--KAITLVT 405 (476)
T ss_pred hccCCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCc--ceEEEEe
Confidence 986655 8999999999999999999999999999999999999999999443 4445544
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=275.89 Aligned_cols=313 Identities=17% Similarity=0.202 Sum_probs=212.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH-HH------hCCCCCeEEEechH-HHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM-EF------KGNYGPHLIIVPNA-VLVNWKSELH 1070 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Ll-e~------kg~~GP~LIVVP~S-LL~QW~~Ef~ 1070 (2240)
..++|+|..++..++. +.+.|+..+||+|||+.++..+...+ .. ......+|||+|+. |+.|+..++.
T Consensus 142 ~~ptpiQ~~aip~il~----g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAALS----GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 3799999999998875 78899999999999999877654432 21 11334689999987 6677888888
Q ss_pred HHCCC--CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHHHH
Q 000099 1071 KWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARD 1144 (2240)
Q Consensus 1071 Kw~Ps--lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKlska 1144 (2240)
.+... ++++.+.|+......+. .....++|+|+|++.+.... ..+...+..+|||||||+|... ...+...
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~---~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i 294 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLY---RIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQI 294 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHH
Confidence 77644 45555555443322221 12346899999999886542 2233346789999999999653 2344455
Q ss_pred hhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000099 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (2240)
Q Consensus 1145 Lk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklL 1224 (2240)
+..+.....+++|||.-. .+. .+...+... ++... .
T Consensus 295 ~~~l~~~q~l~~SATl~~-~v~---~l~~~~~~~--------------~~~i~-~------------------------- 330 (518)
T PLN00206 295 FQALSQPQVLLFSATVSP-EVE---KFASSLAKD--------------IILIS-I------------------------- 330 (518)
T ss_pred HHhCCCCcEEEEEeeCCH-HHH---HHHHHhCCC--------------CEEEE-e-------------------------
Confidence 556666788999999521 111 111111000 00000 0
Q ss_pred hHHHHHhhhhhhccCCCCc--eEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000099 1225 EPFMLRRRVEDVEGSLPPK--VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (2240)
Q Consensus 1225 rPFmLRRlKkDVekdLP~K--vE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLR 1302 (2240)
.. ...+.. ...+++|.
T Consensus 331 ---------~~--~~~~~~~v~q~~~~~~--------------------------------------------------- 348 (518)
T PLN00206 331 ---------GN--PNRPNKAVKQLAIWVE--------------------------------------------------- 348 (518)
T ss_pred ---------CC--CCCCCcceeEEEEecc---------------------------------------------------
Confidence 00 000000 01111111
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh-cCceEEeecCCCCHH
Q 000099 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW-RQLVYRRIDGTTSLE 1381 (2240)
Q Consensus 1303 KICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~-rGiky~rLDGsTs~e 1381 (2240)
...|...|..+|........++||||+....++.|...|.. .|+.+..+||+++.+
T Consensus 349 -----------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~ 405 (518)
T PLN00206 349 -----------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMK 405 (518)
T ss_pred -----------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHH
Confidence 01122233333433333345899999999999999999975 699999999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1382 EReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+|..+++.|+++... +|++|+++++|||++.+++||+||+|.+...|+||+||++|.|....+.+|
T Consensus 406 eR~~il~~Fr~G~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f 471 (518)
T PLN00206 406 ERREVMKSFLVGEVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVF 471 (518)
T ss_pred HHHHHHHHHHCCCCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEE
Confidence 999999999986655 799999999999999999999999999999999999999999977665554
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=257.83 Aligned_cols=313 Identities=20% Similarity=0.241 Sum_probs=209.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.+.|+|..++..++. +.+.|+..+||+|||++++..+...+........+|||||.. |+.||...+..++. .+
T Consensus 50 ~~~~~Q~~ai~~i~~----~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 50 KPSAIQQRGIKPILD----GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 699999999998875 778899999999999988776666554333445799999977 56667776766653 34
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHHHHhhcccc-c
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC-Q 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lks-~ 1151 (2240)
.+..+.|....+... .......+|+|+|++.+.... ..+...++++|||||||++... ...+...+..+.. .
T Consensus 126 ~~~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~ 202 (401)
T PTZ00424 126 RCHACVGGTVVRDDI---NKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDV 202 (401)
T ss_pred eEEEEECCcCHHHHH---HHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCc
Confidence 555566654433222 122345699999999876542 2233447899999999998643 2344555555543 4
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
..+++|||+- +...++ ... ++..|....
T Consensus 203 ~~i~~SAT~~-~~~~~~---~~~--------------~~~~~~~~~---------------------------------- 230 (401)
T PTZ00424 203 QVALFSATMP-NEILEL---TTK--------------FMRDPKRIL---------------------------------- 230 (401)
T ss_pred EEEEEEecCC-HHHHHH---HHH--------------HcCCCEEEE----------------------------------
Confidence 6899999962 111111 000 000000000
Q ss_pred hhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
.+.+ ...+.......+.+..
T Consensus 231 ~~~~-~~~~~~~~~~~~~~~~----------------------------------------------------------- 250 (401)
T PTZ00424 231 VKKD-ELTLEGIRQFYVAVEK----------------------------------------------------------- 250 (401)
T ss_pred eCCC-CcccCCceEEEEecCh-----------------------------------------------------------
Confidence 0000 0000000001111000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
...+...|..++.. ....++||||.....++.+...|...++.+..+||+++.++|..+++.|+
T Consensus 251 --------------~~~~~~~l~~~~~~--~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~ 314 (401)
T PTZ00424 251 --------------EEWKFDTLCDLYET--LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFR 314 (401)
T ss_pred --------------HHHHHHHHHHHHHh--cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 00011112222221 13468999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
++..+ +|++|+++++|||++.+++||+||++.+...|+|++||++|.|....+.++
T Consensus 315 ~g~~~---vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l 370 (401)
T PTZ00424 315 SGSTR---VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINF 370 (401)
T ss_pred cCCCC---EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEE
Confidence 76555 799999999999999999999999999999999999999999976555443
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-24 Score=267.45 Aligned_cols=315 Identities=22% Similarity=0.295 Sum_probs=222.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH--hCCCCCeEEEechHH-HHHHHHHHHHHCC--
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF--KGNYGPHLIIVPNAV-LVNWKSELHKWLP-- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~--kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~P-- 1074 (2240)
...|.|..++..++. +.+.|....||+|||+..+..+...+.. .....++||++|+.. ..|-.+++.++..
T Consensus 51 ~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 51 EPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 688999999988886 6888999999999999988877666542 222223899999985 5666777777653
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhccc
Q 000099 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR 1149 (2240)
Q Consensus 1075 -slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lk 1149 (2240)
.+++++++|+.....+.. .... ..+|||.|++.+.... ..|...+..++|+|||++|.+.. ..+...+..+.
T Consensus 127 ~~~~~~~i~GG~~~~~q~~--~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p 203 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIE--ALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALP 203 (513)
T ss_pred CCccEEEEECCCCHHHHHH--HHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC
Confidence 577788888776665542 2333 4999999999998653 34566678999999999998753 34455555554
Q ss_pred c-ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000099 1150 C-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (2240)
Q Consensus 1150 s-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFm 1228 (2240)
. ...+++|||--. . ++.+..-++. .|..
T Consensus 204 ~~~qtllfSAT~~~-~---i~~l~~~~l~-----------------------------------------------~p~~ 232 (513)
T COG0513 204 PDRQTLLFSATMPD-D---IRELARRYLN-----------------------------------------------DPVE 232 (513)
T ss_pred cccEEEEEecCCCH-H---HHHHHHHHcc-----------------------------------------------CCcE
Confidence 4 557889999411 1 1111110000 0000
Q ss_pred HHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000099 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (2240)
Q Consensus 1229 LRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP 1308 (2240)
+..-........+.....++.|.-
T Consensus 233 i~v~~~~~~~~~~~i~q~~~~v~~-------------------------------------------------------- 256 (513)
T COG0513 233 IEVSVEKLERTLKKIKQFYLEVES-------------------------------------------------------- 256 (513)
T ss_pred EEEccccccccccCceEEEEEeCC--------------------------------------------------------
Confidence 000000000000111111111100
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHH
Q 000099 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388 (2240)
Q Consensus 1309 ~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk 1388 (2240)
...|+.+|..+|.... ..++||||.....++.|...|..+|+.+..|||++++++|.++++
T Consensus 257 -----------------~~~k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~ 317 (513)
T COG0513 257 -----------------EEEKLELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALE 317 (513)
T ss_pred -----------------HHHHHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHH
Confidence 0136667777766433 237999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1389 ~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
.|+++... +||+|+++++|||+..+++||+||.|.++..|+||+||++|.|.+.....+
T Consensus 318 ~F~~g~~~---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~f 376 (513)
T COG0513 318 KFKDGELR---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISF 376 (513)
T ss_pred HHHcCCCC---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEE
Confidence 99976665 799999999999999999999999999999999999999999977654443
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=269.00 Aligned_cols=304 Identities=18% Similarity=0.180 Sum_probs=212.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkV 1078 (2240)
.++|+|.+++..++. +.++|+..+||.|||++++..+. . ..+.+|||+|+. |+.+|...|... ++.+
T Consensus 25 ~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal--~----~~g~tlVisPl~sL~~dqv~~l~~~--gi~~ 92 (607)
T PRK11057 25 QFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPAL--V----LDGLTLVVSPLISLMKDQVDQLLAN--GVAA 92 (607)
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHH--H----cCCCEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 799999999988775 78899999999999988765443 2 135799999975 677788888765 4555
Q ss_pred EEEecchhhH--hHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCCchh-------HHHHHhhc
Q 000099 1079 IYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDR 1147 (2240)
Q Consensus 1079 vvy~GskdeR--k~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN~~S-------KlskaLk~ 1147 (2240)
.++.+..... ...+ .....+..+++++|++.+..+ ...+...++++|||||||.+..... .+......
T Consensus 93 ~~~~s~~~~~~~~~~~-~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~ 171 (607)
T PRK11057 93 ACLNSTQTREQQLEVM-AGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (607)
T ss_pred EEEcCCCCHHHHHHHH-HHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh
Confidence 5555543222 2221 234456789999999988743 3445556789999999999864321 22222223
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
+.....++||||+-.....++...+.+..|.++.. .|..
T Consensus 172 ~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~------~~~r----------------------------------- 210 (607)
T PRK11057 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------SFDR----------------------------------- 210 (607)
T ss_pred CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC------CCCC-----------------------------------
Confidence 44556899999986555555555444332221100 0000
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
|.....++.
T Consensus 211 -------------~nl~~~v~~---------------------------------------------------------- 219 (607)
T PRK11057 211 -------------PNIRYTLVE---------------------------------------------------------- 219 (607)
T ss_pred -------------Ccceeeeee----------------------------------------------------------
Confidence 000000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
...++..|..++. ...+.++||||..+..++.+...|...|+.+..+||+++.++|..++
T Consensus 220 ------------------~~~~~~~l~~~l~--~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~ 279 (607)
T PRK11057 220 ------------------KFKPLDQLMRYVQ--EQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQ 279 (607)
T ss_pred ------------------ccchHHHHHHHHH--hcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHH
Confidence 0000111111221 13467899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+.|..+... +|++|.++|+|||++++++||+||+|++...|.|++||++|.|....+.+++
T Consensus 280 ~~F~~g~~~---VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~ 340 (607)
T PRK11057 280 EAFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (607)
T ss_pred HHHHCCCCC---EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEe
Confidence 999976554 7899999999999999999999999999999999999999999877765543
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=267.37 Aligned_cols=304 Identities=20% Similarity=0.204 Sum_probs=216.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
.++||+|.+++.-++. +.+.|++.+||.|||+.+...+. + ..+.+|||+|.. |+.++...+... ++.
T Consensus 12 ~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~----~~g~~lVisPl~sL~~dq~~~l~~~--gi~ 79 (591)
T TIGR01389 12 DDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--L----LKGLTVVISPLISLMKDQVDQLRAA--GVA 79 (591)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--H----cCCcEEEEcCCHHHHHHHHHHHHHc--CCc
Confidence 3799999999988875 67899999999999998764432 2 236789999965 778898888875 466
Q ss_pred EEEEecchhh--HhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCCch-------hHHHHHhh
Q 000099 1078 CIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRE-------SVLARDLD 1146 (2240)
Q Consensus 1078 Vvvy~Gskde--Rk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN~~-------SKlskaLk 1146 (2240)
+..+++.... ...+. .....+..+|+++|++.+... ...+...++.+|||||||.+.... ..+.....
T Consensus 80 ~~~~~s~~~~~~~~~~~-~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~ 158 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIE-KALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAE 158 (591)
T ss_pred EEEEeCCCCHHHHHHHH-HHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHH
Confidence 6666665432 22222 234456789999999998643 345666789999999999985422 12333333
Q ss_pred ccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
.+.....++||||+-.....+++..+.+-.+..|.. .|.
T Consensus 159 ~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~~----------------------------------- 197 (591)
T TIGR01389 159 RFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SFD----------------------------------- 197 (591)
T ss_pred hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CCC-----------------------------------
Confidence 454455899999986555555554443222211100 000
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
.|.....++.
T Consensus 198 -------------r~nl~~~v~~--------------------------------------------------------- 207 (591)
T TIGR01389 198 -------------RPNLRFSVVK--------------------------------------------------------- 207 (591)
T ss_pred -------------CCCcEEEEEe---------------------------------------------------------
Confidence 0000000000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHH
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReea 1386 (2240)
...+...|..+|.. ..+.++||||..+..++.|.++|...|+.+..+||+++.++|..+
T Consensus 208 -------------------~~~~~~~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i 266 (591)
T TIGR01389 208 -------------------KNNKQKFLLDYLKK--HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAEN 266 (591)
T ss_pred -------------------CCCHHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHH
Confidence 00111222222322 126789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
++.|..+... +|++|.++|.|||++++++||+||+|+|...|.|++||++|.|....+.++
T Consensus 267 ~~~F~~g~~~---vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~ 327 (591)
T TIGR01389 267 QEDFLYDDVK---VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILL 327 (591)
T ss_pred HHHHHcCCCc---EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEe
Confidence 9999975544 799999999999999999999999999999999999999999987776544
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=265.85 Aligned_cols=308 Identities=17% Similarity=0.146 Sum_probs=210.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
..+||+|.++|..++. +.+.|+..+||.|||+++...++. ..+.+|||+|+. |+.++...+.. .++.
T Consensus 459 ~sFRp~Q~eaI~aiL~----GrDVLVimPTGSGKSLcYQLPAL~------~~GiTLVISPLiSLmqDQV~~L~~--~GI~ 526 (1195)
T PLN03137 459 HSFRPNQREIINATMS----GYDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQDQIMNLLQ--ANIP 526 (1195)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHh--CCCe
Confidence 4799999999998876 788999999999999988665532 136799999976 55556666654 3566
Q ss_pred EEEEecchhh--HhHHHHHHHh--hcCCcEEEEcHHHHHHh---hhhcc----ccCcceEecccccccCCchh-------
Q 000099 1078 CIYYVGAKDQ--RSRLFSQEVA--ALKFNVLVTTYEFIMYD---RSKLS----KVDWKYIIIDEAQRMKDRES------- 1139 (2240)
Q Consensus 1078 Vvvy~Gskde--Rk~l~~qei~--~~~fdVVITTYE~L~kD---~s~L~----kikWd~VIIDEAHrLKN~~S------- 1139 (2240)
...+.++... ...++. ... .+.++||++|++.+... ...+. ...+.+|||||||.+.....
T Consensus 527 Aa~L~s~~s~~eq~~ilr-~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr 605 (1195)
T PLN03137 527 AASLSAGMEWAEQLEILQ-ELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQ 605 (1195)
T ss_pred EEEEECCCCHHHHHHHHH-HHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHH
Confidence 6666665432 222221 122 26789999999998642 11221 22478999999999864321
Q ss_pred HHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000099 1140 VLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219 (2240)
Q Consensus 1140 KlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~R 1219 (2240)
.+......+....+++||||.......++...|.+..+.+|. ..|..
T Consensus 606 ~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr------~Sf~R--------------------------- 652 (1195)
T PLN03137 606 GLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR------QSFNR--------------------------- 652 (1195)
T ss_pred HHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee------cccCc---------------------------
Confidence 111222344555689999998666555555544433222211 00100
Q ss_pred HHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000099 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (2240)
Q Consensus 1220 LhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilm 1299 (2240)
|.....++. . . .
T Consensus 653 ---------------------pNL~y~Vv~-k-~---k------------------------------------------ 664 (1195)
T PLN03137 653 ---------------------PNLWYSVVP-K-T---K------------------------------------------ 664 (1195)
T ss_pred ---------------------cceEEEEec-c-c---h------------------------------------------
Confidence 000000000 0 0 0
Q ss_pred HHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCC
Q 000099 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379 (2240)
Q Consensus 1300 qLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs 1379 (2240)
..+..|..++.. ...+...||||..+..++.|..+|...|+.+..+||+++
T Consensus 665 ----------------------------k~le~L~~~I~~-~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs 715 (1195)
T PLN03137 665 ----------------------------KCLEDIDKFIKE-NHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMD 715 (1195)
T ss_pred ----------------------------hHHHHHHHHHHh-cccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCC
Confidence 000111111111 012457899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1380 ~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
.++|..++++|..++.. +||+|.++|+|||++++++||+||+|.+...|.|++|||+|.|....+.+|+-
T Consensus 716 ~eeR~~vqe~F~~Gei~---VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys 785 (1195)
T PLN03137 716 PAQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYS 785 (1195)
T ss_pred HHHHHHHHHHHhcCCCc---EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEec
Confidence 99999999999976555 78999999999999999999999999999999999999999999888777654
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=273.79 Aligned_cols=361 Identities=17% Similarity=0.188 Sum_probs=212.9
Q ss_pred CCCcHHHHHHHHHHHHhhc-CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYN-NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~-n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Psl 1076 (2240)
..||+||.++|..+...+. ...++||++.||+|||+++++++..++. .+..+++|||||. .|+.||..+|..+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~-~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK-AKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh-cCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 5799999999987776554 4467899999999999999999888775 3445789999995 48899999999874321
Q ss_pred e-EE-EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh-------hccccCcceEecccccccCCc----------
Q 000099 1077 S-CI-YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS-------KLSKVDWKYIIIDEAQRMKDR---------- 1137 (2240)
Q Consensus 1077 k-Vv-vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s-------~L~kikWd~VIIDEAHrLKN~---------- 1137 (2240)
. .+ ...+...... ........|+|+|++++.+... .+....|++||||||||....
T Consensus 491 ~~~~~~i~~i~~L~~-----~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~ 565 (1123)
T PRK11448 491 DQTFASIYDIKGLED-----KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQ 565 (1123)
T ss_pred ccchhhhhchhhhhh-----hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhc
Confidence 1 11 1111111110 1123457899999999876421 123347899999999996310
Q ss_pred -------hhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000099 1138 -------ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (2240)
Q Consensus 1138 -------~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~ 1210 (2240)
.++..+.|..+. ..+|+|||||..++ + +.|+.|+....
T Consensus 566 ~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t----~------------------~~FG~pv~~Ys------------ 610 (1123)
T PRK11448 566 FRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT----T------------------EIFGEPVYTYS------------ 610 (1123)
T ss_pred cchhhhHHHHHHHHHhhcC-ccEEEEecCCccch----h------------------HHhCCeeEEee------------
Confidence 133344444443 57899999997432 1 12222222110
Q ss_pred HHHHHHHHHHHHHh-hHHHHHhhhhhhccCCCCceEEE-EE---eccC-HHHHHHHHHHHHccC-cccCchhHHhhhhcC
Q 000099 1211 EKKVIIIHRLHQIL-EPFMLRRRVEDVEGSLPPKVSIV-LR---CRMS-AIQSAIYDWIKATGT-LRVDPEDEKRRVQKN 1283 (2240)
Q Consensus 1211 Ee~~lii~RLhklL-rPFmLRRlKkDVekdLP~KvE~v-V~---c~LS-~~Qr~LYk~L~~~~~-l~ld~~~e~~~l~~~ 1283 (2240)
+.+.+ ..|++. ..|+..... +. +... ..+...|+....... ..+. .+.
T Consensus 611 ---------l~eAI~DG~Lv~--------~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~--d~~------ 665 (1123)
T PRK11448 611 ---------YREAVIDGYLID--------HEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLE--DEV------ 665 (1123)
T ss_pred ---------HHHHHhcCCccc--------CcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCc--HHH------
Confidence 00000 011100 001111111 00 0000 011111111100000 0000 000
Q ss_pred hhhHHHHHH-HHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHh-cCCeEEEEecchhHHHHHH
Q 000099 1284 PIYQAKVYK-TLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILE 1361 (2240)
Q Consensus 1284 ~~~~ak~~~-sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~a-tGhKVLIFSQ~t~~LDiLe 1361 (2240)
.+....+. .+.+ -...+. ++..++..+.. ...|+||||....+++.|.
T Consensus 666 -~~~~~~~~~~vi~-~~~~~~----------------------------i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~ 715 (1123)
T PRK11448 666 -DFEVEDFNRRVIT-ESFNRV----------------------------VCEELAKYLDPTGEGKTLIFAATDAHADMVV 715 (1123)
T ss_pred -hhhHHHHHHHHhh-HHHHHH----------------------------HHHHHHHHHhccCCCcEEEEEcCHHHHHHHH
Confidence 00000000 0000 000111 11122222211 2379999999999999888
Q ss_pred HHHHhc------Cc---eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHH
Q 000099 1362 EYLQWR------QL---VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEE 1432 (2240)
Q Consensus 1362 d~L~~r------Gi---ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~ 1432 (2240)
+.|... ++ .+..++|+++ ++.++|++|.++ .+..||+|++..++|+|++.+++||+++++-++..|+
T Consensus 716 ~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~--~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~ 791 (1123)
T PRK11448 716 RLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNE--RLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYE 791 (1123)
T ss_pred HHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCC--CCCeEEEEecccccCCCcccccEEEEecCCCCHHHHH
Confidence 887643 22 3567999985 577899999863 3447899999999999999999999999999999999
Q ss_pred HHhhhhhccCC---cceEEEEEEehhHHHh
Q 000099 1433 QAVARAHRIGQ---KREVKVIYMEAVVDKI 1459 (2240)
Q Consensus 1433 QAiGRAhRIGQ---KKeV~VyrLvTVEEkI 1459 (2240)
|++||+.|+.- |..+.||.++.+.+.+
T Consensus 792 QmIGRgtR~~~~~~K~~f~I~D~vg~~~~l 821 (1123)
T PRK11448 792 QMLGRATRLCPEIGKTHFRIFDAVDIYEAL 821 (1123)
T ss_pred HHHhhhccCCccCCCceEEEEehHHHHHhc
Confidence 99999999865 6668899987755443
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-23 Score=242.24 Aligned_cols=273 Identities=15% Similarity=0.194 Sum_probs=195.7
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc--
Q 000099 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR-- 1405 (2240)
Q Consensus 1328 GKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr-- 1405 (2240)
.|+.+|.-+|. |.--..|.|||.+..+.+-.|.-+|..-|++.|.|+|.++...|..+|++||.+- +-+||+|+
T Consensus 253 DKflllyallK-L~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~---YdivIAtD~s 328 (569)
T KOG0346|consen 253 DKFLLLYALLK-LRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL---YDIVIATDDS 328 (569)
T ss_pred hhHHHHHHHHH-HHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc---eeEEEEccCc
Confidence 46666655543 4444579999999999999999999999999999999999999999999999743 33677777
Q ss_pred ---------------------------------cccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1406 ---------------------------------AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1406 ---------------------------------AGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
-.++|||++.+.+||+||.|-++..|+||+||+.|.|.+..+.-|..
T Consensus 329 ~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~ 408 (569)
T KOG0346|consen 329 ADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVS 408 (569)
T ss_pred cchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEec
Confidence 12469999999999999999999999999999999998888766544
Q ss_pred ehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCccCcHHHHH---HHHH
Q 000099 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERR---MTLE 1529 (2240)
Q Consensus 1453 vTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~kst~eERr---~~Le 1529 (2240)
.. + ..| .+++|+.....- ..+...+++.-.|+.+..+.-|- ..++
T Consensus 409 P~-e-----------------------~~g----~~~le~~~~d~~----~~~~~qilqPY~f~~eevesfryR~eD~~r 456 (569)
T KOG0346|consen 409 PK-E-----------------------EFG----KESLESILKDEN----RQEGRQILQPYQFRMEEVESFRYRAEDALR 456 (569)
T ss_pred ch-H-----------------------Hhh----hhHHHHHHhhHH----hhcCccccccccchHHHHHHHHHHHHHHHH
Confidence 21 0 111 245555554311 22334488888898876665542 2233
Q ss_pred HHH---hhhhhhhccccCCCCHHHHHHHHhcCHHHHHHHHhhhhhhCcchhhhccccchHHHhhchHHHHHHHhhhcCC-
Q 000099 1530 TLL---HDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKK- 1605 (2240)
Q Consensus 1530 ~LL---e~ee~~~e~~~~v~~~eeLN~~lARseeE~elf~~mD~er~~~~~l~~~~evP~~lr~~~~~~~~~~~~~~k~- 1605 (2240)
+.. -.+.+.+|...+.+..|.|...++.++.|+.++ +.|..+.......|...||+||.- ++.....+.
T Consensus 457 avTkvAvreaR~kEikqEll~SeKLK~~FeeNprdl~lL-rhDkpl~~~~~qphL~dvpeYlvp------~alr~~~~~~ 529 (569)
T KOG0346|consen 457 AVTKVAVREARLKEIKQELLNSEKLKAFFEENPRDLQLL-RHDKPLRLAIVQPHLKDVPEYLVP------EALRGVVKSV 529 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcChHHHHHh-hcCCcccccccchhhccCchhhCC------HHHhhccccc
Confidence 222 246677788888899999999999999999999 899888877788899999999943 122222111
Q ss_pred -CCcccccccccccCccchhhhhhcCCCCCCCCCCcccc
Q 000099 1606 -PSKNILFGSNIGVDSGEIETERKRGPKGKKYPNYKEVD 1643 (2240)
Q Consensus 1606 -~~~~~~~~~~~~~~~~~~~~erkr~~~~~k~~~~k~~~ 1643 (2240)
..+.++.++......+-.++-|+-.|+++|++|++.++
T Consensus 530 k~r~~g~~~~r~n~~rk~~kp~r~f~~kg~K~~pl~~~k 568 (569)
T KOG0346|consen 530 KTRAPGFSPFRNNKRRKVQKPLRKFQPKGGKRDPLKTFK 568 (569)
T ss_pred ccccCCCccchhhhhhhccCchhhcCCCCCCCCcccccC
Confidence 23355666544421111233333447888889888654
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-22 Score=255.52 Aligned_cols=307 Identities=17% Similarity=0.242 Sum_probs=207.0
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-
Q 000099 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP- 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P- 1074 (2240)
.+|.++|.+++..++.-... ..+.||..+||+|||++++..+...+. ....+||++|+. |..||..+|.+|++
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g~qvlilaPT~~LA~Q~~~~~~~l~~~ 310 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AGYQVALMAPTEILAEQHYNSLRNLLAP 310 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEECCHHHHHHHHHHHHHHHhcc
Confidence 37999999999999875432 346799999999999998776665554 234799999987 56889999999987
Q ss_pred -CCeEEEEecchhhH--hHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccc--
Q 000099 1075 -SVSCIYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-- 1149 (2240)
Q Consensus 1075 -slkVvvy~GskdeR--k~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lk-- 1149 (2240)
++++.+++|+.... ...+ ..+..+..+|+|+|+..+... +...+..+|||||+|++.-. .+...+....
T Consensus 311 ~gi~v~lltg~~~~~~r~~~~-~~i~~g~~~IiVgT~~ll~~~---~~~~~l~lvVIDEaH~fg~~--qr~~l~~~~~~~ 384 (630)
T TIGR00643 311 LGIEVALLTGSLKGKRRKELL-ETIASGQIHLVVGTHALIQEK---VEFKRLALVIIDEQHRFGVE--QRKKLREKGQGG 384 (630)
T ss_pred cCcEEEEEecCCCHHHHHHHH-HHHhCCCCCEEEecHHHHhcc---ccccccceEEEechhhccHH--HHHHHHHhcccC
Confidence 57888888865432 2222 234566789999999988643 22246789999999997421 2222222222
Q ss_pred -cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000099 1150 -CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (2240)
Q Consensus 1150 -s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFm 1228 (2240)
..+.|++||||+...+. +.. ++. +.
T Consensus 385 ~~~~~l~~SATp~prtl~----l~~------~~~-------l~------------------------------------- 410 (630)
T TIGR00643 385 FTPHVLVMSATPIPRTLA----LTV------YGD-------LD------------------------------------- 410 (630)
T ss_pred CCCCEEEEeCCCCcHHHH----HHh------cCC-------cc-------------------------------------
Confidence 56799999999754321 100 000 00
Q ss_pred HHhhhhhhccCCCCce--EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1229 LRRRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1229 LRRlKkDVekdLP~Kv--E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
..+...+|... .....+.-.
T Consensus 411 -----~~~i~~~p~~r~~i~~~~~~~~----------------------------------------------------- 432 (630)
T TIGR00643 411 -----TSIIDELPPGRKPITTVLIKHD----------------------------------------------------- 432 (630)
T ss_pred -----eeeeccCCCCCCceEEEEeCcc-----------------------------------------------------
Confidence 00001122110 000000000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecch--------hHHHHHHHHHHh--cCceEEeecC
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT--------KLLDILEEYLQW--RQLVYRRIDG 1376 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t--------~~LDiLed~L~~--rGiky~rLDG 1376 (2240)
+...+...+.+....+++++|||... ..+..+.+.|.. .++.+..+||
T Consensus 433 ----------------------~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG 490 (630)
T TIGR00643 433 ----------------------EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHG 490 (630)
T ss_pred ----------------------hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeC
Confidence 00111112222234577888888654 233445555543 4788999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC-ChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1377 TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1377 sTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW-NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
.++.++|..++++|.++..+ +|+||++.++|||++++++||++|.+. +...+.|+.||++|-|.+..|.+++
T Consensus 491 ~m~~~eR~~i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 491 RMKSDEKEAVMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CCCHHHHHHHHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 99999999999999976655 799999999999999999999999985 7788999999999999887776654
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=255.21 Aligned_cols=306 Identities=17% Similarity=0.209 Sum_probs=206.3
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps 1075 (2240)
.+|.++|..++..+..-... ..+.||..+||+|||++++..+...+. ....+||++|+. |..|+...|.+|++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA~Q~~~~l~~l~~~ 336 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILAEQHYENLKKLLEP 336 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 37999999999988874432 246799999999999998876655443 234799999987 667899999999865
Q ss_pred --CeEEEEecchhh--HhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc-cc
Q 000099 1076 --VSCIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RC 1150 (2240)
Q Consensus 1076 --lkVvvy~Gskde--Rk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks 1150 (2240)
+++.+++|+... +...+ .....+..+|+|+|+..+... +...+..+|||||+|++.- .....+... ..
T Consensus 337 ~~i~v~ll~G~~~~~~r~~~~-~~l~~g~~~IvVgT~~ll~~~---v~~~~l~lvVIDE~Hrfg~---~qr~~l~~~~~~ 409 (681)
T PRK10917 337 LGIRVALLTGSLKGKERREIL-EAIASGEADIVIGTHALIQDD---VEFHNLGLVIIDEQHRFGV---EQRLALREKGEN 409 (681)
T ss_pred cCcEEEEEcCCCCHHHHHHHH-HHHhCCCCCEEEchHHHhccc---chhcccceEEEechhhhhH---HHHHHHHhcCCC
Confidence 788888887543 33322 234556799999999887542 1223678999999999832 222233322 34
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.+.|+|||||+...+. +..+ +. ..
T Consensus 410 ~~iL~~SATp~prtl~----~~~~------g~-----------------~~----------------------------- 433 (681)
T PRK10917 410 PHVLVMTATPIPRTLA----MTAY------GD-----------------LD----------------------------- 433 (681)
T ss_pred CCEEEEeCCCCHHHHH----HHHc------CC-----------------Cc-----------------------------
Confidence 6799999999643211 1000 00 00
Q ss_pred hhhhhhccCCCCce--EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000099 1231 RRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (2240)
Q Consensus 1231 RlKkDVekdLP~Kv--E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP 1308 (2240)
-.+...+|... .....+.
T Consensus 434 ---~s~i~~~p~~r~~i~~~~~~--------------------------------------------------------- 453 (681)
T PRK10917 434 ---VSVIDELPPGRKPITTVVIP--------------------------------------------------------- 453 (681)
T ss_pred ---eEEEecCCCCCCCcEEEEeC---------------------------------------------------------
Confidence 00000122110 0000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchh--------HHHHHHHHHHhc--CceEEeecCCC
Q 000099 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQWR--QLVYRRIDGTT 1378 (2240)
Q Consensus 1309 ~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~--------~LDiLed~L~~r--Giky~rLDGsT 1378 (2240)
..+...+...+.+....+++++|||.... .+..+.+.|... ++.+..+||.+
T Consensus 454 ------------------~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m 515 (681)
T PRK10917 454 ------------------DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRM 515 (681)
T ss_pred ------------------cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 00001111222223356889999997532 234455666554 57899999999
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC-ChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1379 s~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW-NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+.++|..++++|.++..+ +|+||++.++|||++++++||++|.+. ....+.|+.||++|.|.+..|.++.
T Consensus 516 ~~~eR~~i~~~F~~g~~~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~ 586 (681)
T PRK10917 516 KPAEKDAVMAAFKAGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLY 586 (681)
T ss_pred CHHHHHHHHHHHHcCCCC---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEE
Confidence 999999999999976655 799999999999999999999999985 5788999999999999877776554
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=253.94 Aligned_cols=318 Identities=17% Similarity=0.131 Sum_probs=208.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CCCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PSVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~-Pslk 1077 (2240)
+|+++|.+++..++. +.+.|++.+||+|||+.++..+...+.. .....+|||+|+. |..+...+|.++. .+++
T Consensus 36 ~p~~~Q~~ai~~il~----G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 36 RPWQHQARAAELAHA----GRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred cCCHHHHHHHHHHHC----CCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 699999999988775 8899999999999999988776655532 2335789999987 5566777788775 3577
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--------hhccccCcceEecccccccCC-chhHHHHHhhcc
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRY 1148 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--------s~L~kikWd~VIIDEAHrLKN-~~SKlskaLk~L 1148 (2240)
+.+|.|......+ .......+|+|||++++.... ..| .+.++|||||+|.+.+ ..+.+...+..+
T Consensus 111 v~~~~Gdt~~~~r----~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l--~~l~~vViDEah~~~g~fg~~~~~il~rL 184 (742)
T TIGR03817 111 PATYDGDTPTEER----RWAREHARYVLTNPDMLHRGILPSHARWARFL--RRLRYVVIDECHSYRGVFGSHVALVLRRL 184 (742)
T ss_pred EEEEeCCCCHHHH----HHHhcCCCEEEEChHHHHHhhccchhHHHHHH--hcCCEEEEeChhhccCccHHHHHHHHHHH
Confidence 8888887543322 122345799999999886321 112 2568999999999965 233333333332
Q ss_pred --------ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHH
Q 000099 1149 --------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRL 1220 (2240)
Q Consensus 1149 --------ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RL 1220 (2240)
.....+++|||- . +..++.. .+ +..|+....
T Consensus 185 ~ri~~~~g~~~q~i~~SATi-~-n~~~~~~---~l--------------~g~~~~~i~---------------------- 223 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATT-A-DPAAAAS---RL--------------IGAPVVAVT---------------------- 223 (742)
T ss_pred HHHHHhcCCCCEEEEEecCC-C-CHHHHHH---HH--------------cCCCeEEEC----------------------
Confidence 124689999994 2 2232211 11 111110000
Q ss_pred HHHhhHHHHHhhhhhhccCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000099 1221 HQILEPFMLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (2240)
Q Consensus 1221 hklLrPFmLRRlKkDVekdLP~Kv-E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilm 1299 (2240)
. ...|... ...++.+ .. +. + .. . . ..
T Consensus 224 -------------~---~~~~~~~~~~~~~~p-~~-----~~-~--------~~--~-~---~~---------------- 250 (742)
T TIGR03817 224 -------------E---DGSPRGARTVALWEP-PL-----TE-L--------TG--E-N---GA---------------- 250 (742)
T ss_pred -------------C---CCCCcCceEEEEecC-Cc-----cc-c--------cc--c-c---cc----------------
Confidence 0 0011111 1111110 00 00 0 00 0 0 00
Q ss_pred HHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--------CceE
Q 000099 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--------QLVY 1371 (2240)
Q Consensus 1300 qLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--------Giky 1371 (2240)
..| . .....+..+| ..+...+.++||||+.+..++.|..+|... +..+
T Consensus 251 ~~r-----------------~---~~~~~~~~~l----~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v 306 (742)
T TIGR03817 251 PVR-----------------R---SASAEAADLL----ADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERV 306 (742)
T ss_pred ccc-----------------c---chHHHHHHHH----HHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccch
Confidence 000 0 0001122333 333345789999999999999999988754 5677
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEE
Q 000099 1372 RRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (2240)
Q Consensus 1372 ~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~V 1449 (2240)
..++|+++.++|.+++++|+++... +|++|+++++|||+..+|+||+||.|-+...|+||+||++|.|....+.+
T Consensus 307 ~~~hgg~~~~eR~~ie~~f~~G~i~---vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~ 381 (742)
T TIGR03817 307 AAYRAGYLPEDRRELERALRDGELL---GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVL 381 (742)
T ss_pred hheecCCCHHHHHHHHHHHHcCCce---EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEE
Confidence 8899999999999999999975554 79999999999999999999999999999999999999999997765443
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=258.01 Aligned_cols=305 Identities=16% Similarity=0.208 Sum_probs=209.4
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps 1075 (2240)
.+|.|+|..++..++.-... ..+.||+.+||+|||.+++..+..... . ...+||+||+. |..|+...|.+++..
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-~--g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-D--GKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-h--CCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 46899999999999875433 256799999999999988766554443 2 25799999987 667888999998764
Q ss_pred --CeEEEEecchh--hHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccc-c
Q 000099 1076 --VSCIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1150 (2240)
Q Consensus 1076 --lkVvvy~Gskd--eRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lk-s 1150 (2240)
+++.+++|... ++.+.+ ..+..+..+|||+|+..+.++ +.-.+..+|||||+|++.. .....+..+. .
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~-~~l~~g~~dIVIGTp~ll~~~---v~f~~L~llVIDEahrfgv---~~~~~L~~~~~~ 599 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEIL-KELASGKIDILIGTHKLLQKD---VKFKDLGLLIIDEEQRFGV---KQKEKLKELRTS 599 (926)
T ss_pred CCcEEEEEeccccHHHHHHHH-HHHHcCCceEEEchHHHhhCC---CCcccCCEEEeecccccch---hHHHHHHhcCCC
Confidence 45666666432 333332 234456789999999766432 2224678999999999742 3344455553 4
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
...|+|||||+...+... +..+..+.++
T Consensus 600 ~~vL~~SATpiprtl~~~--l~g~~d~s~I-------------------------------------------------- 627 (926)
T TIGR00580 600 VDVLTLSATPIPRTLHMS--MSGIRDLSII-------------------------------------------------- 627 (926)
T ss_pred CCEEEEecCCCHHHHHHH--HhcCCCcEEE--------------------------------------------------
Confidence 568999999965433211 1111000000
Q ss_pred hhhhhhccCCCCce--EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000099 1231 RRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (2240)
Q Consensus 1231 RlKkDVekdLP~Kv--E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP 1308 (2240)
...|... .....+..+.
T Consensus 628 -------~~~p~~R~~V~t~v~~~~~------------------------------------------------------ 646 (926)
T TIGR00580 628 -------ATPPEDRLPVRTFVMEYDP------------------------------------------------------ 646 (926)
T ss_pred -------ecCCCCccceEEEEEecCH------------------------------------------------------
Confidence 0000000 0000000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCHHHHHHH
Q 000099 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1309 ~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~eEReea 1386 (2240)
..+...++.. ...+.+|+|||+....++.+.+.|... ++++..+||.|+.++|.++
T Consensus 647 ---------------------~~i~~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~i 704 (926)
T TIGR00580 647 ---------------------ELVREAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEV 704 (926)
T ss_pred ---------------------HHHHHHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Confidence 0001111122 234789999999999999999999874 7899999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC-CChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p-WNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++|..+..+ +||||++.++|||++++++||++|.+ +....+.|++||++|.|.+..|.+++
T Consensus 705 m~~F~~Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~ 767 (926)
T TIGR00580 705 MLEFYKGEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLY 767 (926)
T ss_pred HHHHHcCCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEE
Confidence 9999987665 89999999999999999999999996 46778999999999999877665553
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-23 Score=212.73 Aligned_cols=104 Identities=14% Similarity=0.315 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
|+.+|++||+.|...+|++||.++.+|+++|++.++||||++ |++||||.+|++||++++|.++++|..||.|||.||+
T Consensus 1 ~~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 1 MQQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYYDV-IKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred ChHHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLK 2043 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k 2043 (2240)
.||+++|.+|.+|..|+++|.++.+
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~~ 104 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETKR 104 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999998754
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=256.38 Aligned_cols=326 Identities=17% Similarity=0.162 Sum_probs=203.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC------CCCCeEEEechH-HHHHHHH----
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG------NYGPHLIIVPNA-VLVNWKS---- 1067 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg------~~GP~LIVVP~S-LL~QW~~---- 1067 (2240)
+.|+|+|..++..++. +.++|++.+||+|||+.++..+...+.... ....+|+|+|+. |..++..
T Consensus 31 ~~~tpiQ~~Ai~~il~----g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIHE----GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3699999999987754 789999999999999998776554332211 123589999987 4455544
Q ss_pred ---HHHHHC-------CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hc--cccCcceEecccccc
Q 000099 1068 ---ELHKWL-------PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KL--SKVDWKYIIIDEAQR 1133 (2240)
Q Consensus 1068 ---Ef~Kw~-------PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L--~kikWd~VIIDEAHr 1133 (2240)
++.+++ +.+.+.+++|......+. .......+|+|||++.+..... .+ .-.+.++|||||+|.
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~---~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~ 183 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ---KMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHS 183 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH---HHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhh
Confidence 333443 367888888875443221 2233467999999999853311 11 012568999999999
Q ss_pred cCCch--hHHHHHhh---cc--ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChh
Q 000099 1134 MKDRE--SVLARDLD---RY--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDD 1206 (2240)
Q Consensus 1134 LKN~~--SKlskaLk---~L--ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d 1206 (2240)
+.+.. ..+...+. .+ ....+|+||||. .++.++.. ||...... +..
T Consensus 184 l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~----------------~~~------ 236 (876)
T PRK13767 184 LAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD----------------GEP------ 236 (876)
T ss_pred hccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc----------------CCC------
Confidence 97532 22222222 22 235689999996 23333322 22110000 000
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhh
Q 000099 1207 WLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIY 1286 (2240)
Q Consensus 1207 ~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~ 1286 (2240)
+++.+ +...........+.++... ++.
T Consensus 237 ------------------r~~~i------v~~~~~k~~~i~v~~p~~~----l~~------------------------- 263 (876)
T PRK13767 237 ------------------RDCEI------VDARFVKPFDIKVISPVDD----LIH------------------------- 263 (876)
T ss_pred ------------------CceEE------EccCCCccceEEEeccCcc----ccc-------------------------
Confidence 00000 0000000001111111000 000
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh
Q 000099 1287 QAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW 1366 (2240)
Q Consensus 1287 ~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~ 1366 (2240)
. .. ......+...|.++...++++||||+.+..++.+...|..
T Consensus 264 --------------------------~-----~~------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~ 306 (876)
T PRK13767 264 --------------------------T-----PA------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRK 306 (876)
T ss_pred --------------------------c-----cc------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHH
Confidence 0 00 0000112233344445678999999999999999999876
Q ss_pred c------CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhc
Q 000099 1367 R------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHR 1440 (2240)
Q Consensus 1367 r------Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhR 1440 (2240)
. +..+..+||+++.++|..+++.|+++... +|+||+++++|||+..+|+||+||+|.+...|+||+||++|
T Consensus 307 ~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~---vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR 383 (876)
T PRK13767 307 RFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK---VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGH 383 (876)
T ss_pred hchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe---EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCC
Confidence 3 46788899999999999999999976544 79999999999999999999999999999999999999998
Q ss_pred c-CCcceEEEEE
Q 000099 1441 I-GQKREVKVIY 1451 (2240)
Q Consensus 1441 I-GQKKeV~Vyr 1451 (2240)
. |......++.
T Consensus 384 ~~g~~~~g~ii~ 395 (876)
T PRK13767 384 RLGEVSKGRIIV 395 (876)
T ss_pred CCCCCCcEEEEE
Confidence 6 4444444443
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=260.66 Aligned_cols=307 Identities=18% Similarity=0.213 Sum_probs=208.1
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps 1075 (2240)
.++.+.|..++.-++.-... ..+.|++.+||+|||.+++..+..... ....+|||||+. |..|+...|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 37889999999888774432 356899999999999987654433332 245799999987 557788888887654
Q ss_pred --CeEEEEecc--hhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccc-c
Q 000099 1076 --VSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1150 (2240)
Q Consensus 1076 --lkVvvy~Gs--kdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lk-s 1150 (2240)
+++.++.|. ..++...+. ....+..+|||+|++.+.++ +...++++|||||+|++.. .....+..+. .
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~-~l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~---~~~e~lk~l~~~ 748 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILA-EAAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGV---RHKERIKAMRAD 748 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHH-HHHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcch---hHHHHHHhcCCC
Confidence 555556554 333333322 23346789999999877532 2224688999999999843 2334455543 4
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
...|+|||||+...+.-. +..+.++.++. .+ |
T Consensus 749 ~qvLl~SATpiprtl~l~--~~gl~d~~~I~----------~~--------------------------------p---- 780 (1147)
T PRK10689 749 VDILTLTATPIPRTLNMA--MSGMRDLSIIA----------TP--------------------------------P---- 780 (1147)
T ss_pred CcEEEEcCCCCHHHHHHH--HhhCCCcEEEe----------cC--------------------------------C----
Confidence 568999999976543211 11111110000 00 0
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
...+|- .+. .....
T Consensus 781 ------~~r~~v--~~~-~~~~~--------------------------------------------------------- 794 (1147)
T PRK10689 781 ------ARRLAV--KTF-VREYD--------------------------------------------------------- 794 (1147)
T ss_pred ------CCCCCc--eEE-EEecC---------------------------------------------------------
Confidence 000000 000 00000
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIV 1388 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~eEReeaIk 1388 (2240)
.......++.++. .+.+|+|||+.+..++.+.+.|... ++.+..+||.|+.++|.+++.
T Consensus 795 ------------------~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~ 855 (1147)
T PRK10689 795 ------------------SLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 855 (1147)
T ss_pred ------------------cHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHH
Confidence 0001122333333 4678999999999999999999877 788999999999999999999
Q ss_pred HHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC-CChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1389 ~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p-WNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+|.++..+ +||||+++++|||++.+++||+.+.+ |+...+.|++||++|.|.+..|.+++
T Consensus 856 ~Fr~Gk~~---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 856 DFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred HHHhcCCC---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEe
Confidence 99986665 79999999999999999999988776 68888999999999999887766554
|
|
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-23 Score=210.47 Aligned_cols=103 Identities=13% Similarity=0.253 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Q 000099 1938 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017 (2240)
Q Consensus 1938 ~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na 2017 (2240)
.|+..|++++..|...+|++||.+|++|+++|+|.++||||++ |++||||.+|++||++++|.++++|..||+|||.||
T Consensus 2 ~l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~~pdYy~~-I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 2 RLAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKKNPDYYER-ITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred hHHHHHHHHHHHHHHhhccCCCcccHhhccCCCcccCCchhhh-CCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 3667899999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHH
Q 000099 2018 MQFYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2018 ~~yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
+.||+++|++|++|+.|+++|.+.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999874
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-23 Score=212.11 Aligned_cols=107 Identities=21% Similarity=0.359 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
-++|++|+.+|...++++||.|+.+|+++|+|+++||||++ |++||||.+|++||++++|.++.+|..||.|||+||+.
T Consensus 4 ~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~~PdYy~i-I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 82 (113)
T cd05524 4 IAVCQELYDTIRNYKSEDGRILCESFIRVPKRRNEPEYYEV-VSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNAKA 82 (113)
T ss_pred HHHHHHHHHHHHhhcccCCCchhHHHhcCCCcccCCCHHHH-hCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
||+++|.+|.+|..|+++|...++.+.+
T Consensus 83 yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 110 (113)
T cd05524 83 YYKPDSPEHKDACKLWELFLSARNEVLS 110 (113)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999988765
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-22 Score=208.87 Aligned_cols=105 Identities=16% Similarity=0.289 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
++++|+.|++.|.+..|++||.++++|+.+|++.++||||++ |++||||.+|+.||++++|.++.+|..||.|||.||+
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~~pdYy~i-I~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~ 80 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNAQ 80 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCcccCCCHHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
.||+++|.+|.+|..|+++|.+++++
T Consensus 81 ~yN~~~s~i~~~a~~l~~~f~~~~~~ 106 (107)
T cd05516 81 TFNLEGSLIYEDSIVLQSVFKSARQK 106 (107)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999875
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-22 Score=208.02 Aligned_cols=101 Identities=19% Similarity=0.320 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
|..|.+|++.|.+..|++||.|+++|+.+|+|.++||||++ |++||||.+|++||++++|.++.+|..||.|||+||+.
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~~pdYy~v-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~ 80 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVLYPDYYAV-IKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAKT 80 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCCCCCHHHH-cCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
||+++|.+|++|+.|+++|..+
T Consensus 81 yN~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05517 81 FNEPGSQVYKDANAIKKIFTAK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999763
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-22 Score=207.33 Aligned_cols=101 Identities=16% Similarity=0.248 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
|+++++|+..|.+.+|..||.++.+|+.+|++.++||||++ |++||||.+|+.||++++|.++.+|..||+|||.||+.
T Consensus 2 ~~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~~pdYy~i-Ik~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 2 KKRMLALFLYVLEYREGSGRRLCDLFMEKPSKKDYPDYYKI-ILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred hHHHHHHHHHHHHhhccCCCcccHHHhcCCCcccCccHHHH-cCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
||+++|+||.+|+.|+++|.++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999875
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=233.96 Aligned_cols=332 Identities=22% Similarity=0.365 Sum_probs=231.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~P--s 1075 (2240)
..|||||.+.|..|.-.- .-..||+..++|.|||++.+..++... +.+||+|-.++ +.||...|..|.. .
T Consensus 301 t~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~tik------K~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAACTIK------KSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeeeeec------ccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 479999999999886411 124589999999999998877665443 47899998775 8999999999973 3
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh----------hhhccccCcceEecccccccCCchhHHHHHh
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----------RSKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD----------~s~L~kikWd~VIIDEAHrLKN~~SKlskaL 1145 (2240)
-.++.+.....++ ......|+||||.++... ..+|....|.+||+||.|-+ +.....+.|
T Consensus 374 ~~i~rFTsd~Ke~--------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv--PA~MFRRVl 443 (776)
T KOG1123|consen 374 DQICRFTSDAKER--------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV--PAKMFRRVL 443 (776)
T ss_pred cceEEeecccccc--------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc--hHHHHHHHH
Confidence 4455555544332 345678999999998642 46688889999999999997 333444455
Q ss_pred hccccceEEEeecCCCCCCHHHHHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000099 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (2240)
Q Consensus 1146 k~Lks~~RLLLTGTPLQNnL~ELwSLLnFL-lP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklL 1224 (2240)
.-..+.+.|+||||-+..+ |-..=|||| .|.++. ..|.+...
T Consensus 444 siv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE-----------------------AnWmdL~~------------ 486 (776)
T KOG1123|consen 444 SIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE-----------------------ANWMDLQK------------ 486 (776)
T ss_pred HHHHHHhhccceeEEeecc--ccccccceeecchhhh-----------------------ccHHHHHh------------
Confidence 5567888999999988764 222224555 444432 11111110
Q ss_pred hHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000099 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (2240)
Q Consensus 1225 rPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKI 1304 (2240)
...+-......|||+||+.-...|- .... ++ .+ |
T Consensus 487 ------------kGhIA~VqCaEVWCpMt~eFy~eYL---~~~t--------~k--------------r~------l--- 520 (776)
T KOG1123|consen 487 ------------KGHIAKVQCAEVWCPMTPEFYREYL---RENT--------RK--------------RM------L--- 520 (776)
T ss_pred ------------CCceeEEeeeeeecCCCHHHHHHHH---hhhh--------hh--------------hh------e---
Confidence 0123334456799999986544442 2100 00 00 0
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH
Q 000099 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1305 CNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe 1384 (2240)
| .+-...||....-++......|.|+|||+...-. |.+|--..|-+| |.|.|++.+|-
T Consensus 521 -----L------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfA---Lk~YAikl~Kpf--IYG~Tsq~ERm 578 (776)
T KOG1123|consen 521 -----L------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFA---LKEYAIKLGKPF--IYGPTSQNERM 578 (776)
T ss_pred -----e------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHH---HHHHHHHcCCce--EECCCchhHHH
Confidence 0 0112357888888888888899999999976544 444544456665 78999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC-ChhhHHHHhhhhhccCCcce----EEEEEEeh
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKRE----VKVIYMEA 1454 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW-NP~~d~QAiGRAhRIGQKKe----V~VyrLvT 1454 (2240)
++++.|+. +..+..|++| ++|...+||+.|+++|-..+.. +..++.||.||+.|.-...+ +..|-|++
T Consensus 579 ~ILqnFq~-n~~vNTIFlS-KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS 651 (776)
T KOG1123|consen 579 KILQNFQT-NPKVNTIFLS-KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVS 651 (776)
T ss_pred HHHHhccc-CCccceEEEe-eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeee
Confidence 99999986 5566666676 9999999999999999999886 78889999999999863322 45666655
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-21 Score=228.19 Aligned_cols=309 Identities=19% Similarity=0.262 Sum_probs=210.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechHHHH----HHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNAVLV----NWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~---~GP~LIVVP~SLL~----QW~~Ef~Kw 1072 (2240)
...|.|..++.-.+- +...+-|..||+|||..++..|+..+-.++. .-++||+||+.-|. +....+..|
T Consensus 203 ~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 566788888875554 5566778899999999988877654443432 34689999998553 344556666
Q ss_pred CCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccc---cCcceEecccccccCCch--hHHHHHhhc
Q 000099 1073 LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK---VDWKYIIIDEAQRMKDRE--SVLARDLDR 1147 (2240)
Q Consensus 1073 ~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~k---ikWd~VIIDEAHrLKN~~--SKlskaLk~ 1147 (2240)
+ ++.+....|+-+.+.+- ......+||||.|++.|+.+...-.. ....++|+|||+||.... ..+...+..
T Consensus 279 t-~I~~~L~vGGL~lk~QE---~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~l 354 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQE---AVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRL 354 (691)
T ss_pred c-cceeeeeecCccHHHHH---HHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHh
Confidence 5 48888888888776442 34567899999999999988644333 356789999999997532 233333332
Q ss_pred c-ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1148 Y-RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1148 L-ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
. +.+..+|+|||- .....||.++- +++|+...-... .... ..|+.
T Consensus 355 cpk~RQTmLFSATM-teeVkdL~slS-----------------L~kPvrifvd~~-~~~a---------------~~LtQ 400 (691)
T KOG0338|consen 355 CPKNRQTMLFSATM-TEEVKDLASLS-----------------LNKPVRIFVDPN-KDTA---------------PKLTQ 400 (691)
T ss_pred ccccccceeehhhh-HHHHHHHHHhh-----------------cCCCeEEEeCCc-cccc---------------hhhhH
Confidence 2 223469999993 33333333310 111111100000 0000 00000
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
-++ ++|
T Consensus 401 EFi----------------------------------------------------------------------RIR---- 406 (691)
T KOG0338|consen 401 EFI----------------------------------------------------------------------RIR---- 406 (691)
T ss_pred HHh----------------------------------------------------------------------eec----
Confidence 000 000
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHH
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReea 1386 (2240)
+. +..-+-.+|..++.+++ ..++|||++....+..|.-.|-..|+++.-|||+.++.+|.+.
T Consensus 407 ------~~----------re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRles 468 (691)
T KOG0338|consen 407 ------PK----------REGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLES 468 (691)
T ss_pred ------cc----------cccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHH
Confidence 00 00001223333444443 5689999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
++.|+....+ +||+|+++++|||+..+.+||+|+.|-+...|+||+||+.|.|.-.
T Consensus 469 L~kFk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG 524 (691)
T KOG0338|consen 469 LEKFKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG 524 (691)
T ss_pred HHHHHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc
Confidence 9999987766 7999999999999999999999999999999999999999999653
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-21 Score=234.91 Aligned_cols=346 Identities=18% Similarity=0.227 Sum_probs=216.9
Q ss_pred CCcHHHHHHHHHHHHhhc-----CCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH-HHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA-VLVNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~-----n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (2240)
.++|-|...+.|++.-.+ .....+++.+||+|||+.....|..++..+ -.+-++|||||+. |+.|-..+|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 699999999999987655 234458899999999999888887777544 3445789999987 567889999999
Q ss_pred CCC--CeEEEEecchhhHhHHHH--HHHhhcCCcEEEEcHHHHHHhhhh---ccccCcceEecccccccCCchhH--HHH
Q 000099 1073 LPS--VSCIYYVGAKDQRSRLFS--QEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRESV--LAR 1143 (2240)
Q Consensus 1073 ~Ps--lkVvvy~GskdeRk~l~~--qei~~~~fdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrLKN~~SK--lsk 1143 (2240)
+++ +.|+...|-...+.+... ........||+|+|++.++.+... |.--+..|+|||||+||.+...+ +..
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~ 318 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDT 318 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHH
Confidence 975 566666776554443321 112234569999999999988653 33446789999999999874433 223
Q ss_pred HhhccccceEEEeecC-------CCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000099 1144 DLDRYRCQRRLLLTGT-------PLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216 (2240)
Q Consensus 1144 aLk~Lks~~RLLLTGT-------PLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~li 1216 (2240)
.+.......++.+++- |...-+.++.+.+.-+
T Consensus 319 v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~----------------------------------------- 357 (620)
T KOG0350|consen 319 VMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKL----------------------------------------- 357 (620)
T ss_pred HHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCc-----------------------------------------
Confidence 3333333323222211 1111112222211100
Q ss_pred HHHHHHHhhHHHHHhhhhh---hccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHH
Q 000099 1217 IHRLHQILEPFMLRRRVED---VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293 (2240)
Q Consensus 1217 i~RLhklLrPFmLRRlKkD---VekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~s 1293 (2240)
...|.+++.+-.|.+.-.. +.-..|........ + + +...+-
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~--~----------~---~ryslp--------------------- 401 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKP--L----------I---GRYSLP--------------------- 401 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCCCceEEeecc--c----------c---eeeecC---------------------
Confidence 1112222222222221111 11122321111100 0 0 000000
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHH----hcCc
Q 000099 1294 LNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ----WRQL 1369 (2240)
Q Consensus 1294 L~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~----~rGi 1369 (2240)
..+.. +.+...+ --|-..+..++.. ....++|+|++.......|...|+ ...+
T Consensus 402 --~~l~~-~~vv~~~------------------~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~ 458 (620)
T KOG0350|consen 402 --SSLSH-RLVVTEP------------------KFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNF 458 (620)
T ss_pred --hhhhh-ceeeccc------------------ccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccc
Confidence 00000 0000000 0122233334433 346799999999888877777766 4466
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEE
Q 000099 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1370 ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
++..++|..+.+.|.+++.+|+.++.. +||+++++++|+|+.++|.||+||+|-.-..|+||+||+.|.||...+.
T Consensus 459 ~~s~~t~~l~~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~ 534 (620)
T KOG0350|consen 459 KVSEFTGQLNGKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAI 534 (620)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEE
Confidence 677799999999999999999987766 7999999999999999999999999999999999999999999987764
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-20 Score=221.44 Aligned_cols=318 Identities=20% Similarity=0.279 Sum_probs=222.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCC----CeEEEechHHHHHH----HHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYG----PHLIIVPNAVLVNW----KSEL 1069 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~-kg~~G----P~LIVVP~SLL~QW----~~Ef 1069 (2240)
..+.|-|..++..++. +....+-..||+|||+..+..+...+.. ..... -.|||.|+..|.-. ...|
T Consensus 27 ~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 3788999999988886 7778888999999999999988776632 22222 35999999865443 3446
Q ss_pred HHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh----hhhccccCcceEecccccccCCc--hhHHHH
Q 000099 1070 HKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQRMKDR--ESVLAR 1143 (2240)
Q Consensus 1070 ~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD----~s~L~kikWd~VIIDEAHrLKN~--~SKlsk 1143 (2240)
..+++++++..+.|+......+- .+.....+|+|.|++.+..- ...+......++|+|||+++... ...+..
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~--~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ 180 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIK--TFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNT 180 (567)
T ss_pred HHhhhccceEEEecCccHHHHHH--HHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHH
Confidence 66679999999999866554432 34556789999999988654 33466567889999999999753 344555
Q ss_pred HhhccccceEE-EeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000099 1144 DLDRYRCQRRL-LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (2240)
Q Consensus 1144 aLk~Lks~~RL-LLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhk 1222 (2240)
.|..+...+|- |+|||-.+. ..+| ..
T Consensus 181 ILs~LPKQRRTGLFSATq~~~-v~dL---~r------------------------------------------------- 207 (567)
T KOG0345|consen 181 ILSFLPKQRRTGLFSATQTQE-VEDL---AR------------------------------------------------- 207 (567)
T ss_pred HHHhcccccccccccchhhHH-HHHH---HH-------------------------------------------------
Confidence 66666655554 356662100 0000 00
Q ss_pred HhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHH
Q 000099 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302 (2240)
Q Consensus 1223 lLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLR 1302 (2240)
+-|| ..+...|... ..
T Consensus 208 ----aGLR-----------Npv~V~V~~k-------------------------~~------------------------ 223 (567)
T KOG0345|consen 208 ----AGLR-----------NPVRVSVKEK-------------------------SK------------------------ 223 (567)
T ss_pred ----hhcc-----------Cceeeeeccc-------------------------cc------------------------
Confidence 0011 0000000000 00
Q ss_pred HHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCH
Q 000099 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSL 1380 (2240)
Q Consensus 1303 KICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~ 1380 (2240)
.+.|.-.. ..-..+...-|+..|..+|.. ...+|+|||..+....++....|... .+.++.+||.++.
T Consensus 224 --~~tPS~L~------~~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q 293 (567)
T KOG0345|consen 224 --SATPSSLA------LEYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQ 293 (567)
T ss_pred --ccCchhhc------ceeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcc
Confidence 00000000 000122334577777777775 55789999999999999888877654 6789999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1381 eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
..|..+++.|...... +|+||+++++|||++++|.||.||||-+|..+.||.||+.|.|......|+.+
T Consensus 294 ~~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 294 KARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred hhHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEec
Confidence 9999999999973333 79999999999999999999999999999999999999999999988777755
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=225.50 Aligned_cols=313 Identities=21% Similarity=0.228 Sum_probs=217.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC-----CeEEEechHHH-HHHHHHHHHHC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG-----PHLIIVPNAVL-VNWKSELHKWL 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~G-----P~LIVVP~SLL-~QW~~Ef~Kw~ 1073 (2240)
.+.+.|..+|...+. +...|-|.-||+|||+..+..++..+.. ..|. -+|||.|+..| .|-..-+.+..
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r-~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYR-LKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHH-cCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 577889999888876 7777889999999999988765544332 2232 47999999855 45555555543
Q ss_pred --CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh---hhccccCcceEecccccccCCchh--HHHHHhh
Q 000099 1074 --PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRES--VLARDLD 1146 (2240)
Q Consensus 1074 --PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrLKN~~S--KlskaLk 1146 (2240)
..+.+..+.|+.+.... ..+....+|+|||++.|..+. ..|.--...++|+|||+||....- .+-..+.
T Consensus 166 k~h~fSaGLiiGG~~~k~E----~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~ 241 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFE----LERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIE 241 (758)
T ss_pred hccccccceeecCchhHHH----HHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHH
Confidence 35677777777664432 234567899999999998764 345556789999999999976432 3344445
Q ss_pred cccc-ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000099 1147 RYRC-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (2240)
Q Consensus 1147 ~Lks-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr 1225 (2240)
.+.. +..||+|||+. ++..||.- |++-+|.+..-. . +
T Consensus 242 ~lP~~RQTLLFSATqt-~svkdLaR-LsL~dP~~vsvh-------e----------~----------------------- 279 (758)
T KOG0343|consen 242 NLPKKRQTLLFSATQT-KSVKDLAR-LSLKDPVYVSVH-------E----------N----------------------- 279 (758)
T ss_pred hCChhheeeeeecccc-hhHHHHHH-hhcCCCcEEEEe-------c----------c-----------------------
Confidence 5543 45899999983 33344422 111222211000 0 0
Q ss_pred HHHHHhhhhhhccCCCCc-eEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000099 1226 PFMLRRRVEDVEGSLPPK-VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (2240)
Q Consensus 1226 PFmLRRlKkDVekdLP~K-vE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKI 1304 (2240)
.+. ..|.. ....+
T Consensus 280 ---------a~~-atP~~L~Q~y~-------------------------------------------------------- 293 (758)
T KOG0343|consen 280 ---------AVA-ATPSNLQQSYV-------------------------------------------------------- 293 (758)
T ss_pred ---------ccc-cChhhhhheEE--------------------------------------------------------
Confidence 000 00000 00011
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCHHH
Q 000099 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLED 1382 (2240)
Q Consensus 1305 CNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~eE 1382 (2240)
++....|+.+|-..|.... ..|.|||......+.++.+.|... |++...|+|.+++..
T Consensus 294 ------------------~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~ 353 (758)
T KOG0343|consen 294 ------------------IVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKK 353 (758)
T ss_pred ------------------EEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHH
Confidence 1122235555555555432 458999999999999988887654 899999999999999
Q ss_pred HHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1383 RESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1383 ReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
|.++..+|.. .-.++|+||+++++|||++.+|+||-||.|-+...|+||.||+.|.+...+..++..
T Consensus 354 R~ev~~~F~~---~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~ 420 (758)
T KOG0343|consen 354 RIEVYKKFVR---KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT 420 (758)
T ss_pred HHHHHHHHHH---hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc
Confidence 9999999986 334699999999999999999999999999999999999999999999988877755
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-20 Score=215.07 Aligned_cols=314 Identities=19% Similarity=0.198 Sum_probs=220.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH-HHHHHC--CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS-ELHKWL--PSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~-Ef~Kw~--Psl 1076 (2240)
+..|.|..++..++. +.+||=|.-||+|||......|..-+...+..--.||++|+.-+.-... .|.... -++
T Consensus 29 ~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 567899999999998 8899999999999999887777766654555456799999986654444 454332 357
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh------hccccCcceEecccccccCCchh--HHHHHhhcc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS------KLSKVDWKYIIIDEAQRMKDRES--VLARDLDRY 1148 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s------~L~kikWd~VIIDEAHrLKN~~S--KlskaLk~L 1148 (2240)
++.+++|+.+.-.+ ......+.||||+|++.+..... .....+..++|+|||+++.+..- .+.-....+
T Consensus 105 K~~vivGG~d~i~q---a~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~l 181 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQ---AAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECL 181 (442)
T ss_pred eEEEEEccHHHhhh---hhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccchhhHHhhhhccC
Confidence 88888887665432 23456789999999999865421 12223568999999999976422 122222233
Q ss_pred ccc-eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1149 RCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1149 ks~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
... ..|+||||- .+++.+| |..|+.+...
T Consensus 182 P~~RQtLlfSATi-td~i~ql---------------------~~~~i~k~~a---------------------------- 211 (442)
T KOG0340|consen 182 PKPRQTLLFSATI-TDTIKQL---------------------FGCPITKSIA---------------------------- 211 (442)
T ss_pred CCccceEEEEeeh-hhHHHHh---------------------hcCCcccccc----------------------------
Confidence 333 579999992 3332222 2222111000
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
..++. .+ -.+.-..+|.
T Consensus 212 ------~~~e~-~~----------~vstvetL~q---------------------------------------------- 228 (442)
T KOG0340|consen 212 ------FELEV-ID----------GVSTVETLYQ---------------------------------------------- 228 (442)
T ss_pred ------eEEec-cC----------CCCchhhhhh----------------------------------------------
Confidence 00000 00 0000000110
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHh-cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~a-tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReea 1386 (2240)
...++...+|-.+|..+|..... .+..++||++.+..+.+|...|+..++....+|+-|++.+|..+
T Consensus 229 ------------~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a 296 (442)
T KOG0340|consen 229 ------------GYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA 296 (442)
T ss_pred ------------heeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH
Confidence 00112223456667777777655 56789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEE
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
+-+|+++... +|++|+++++|||+++++.||+||.|-.|..|+||.||+.|.|......
T Consensus 297 LsrFrs~~~~---iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ai 355 (442)
T KOG0340|consen 297 LSRFRSNAAR---ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAI 355 (442)
T ss_pred HHHHhhcCcc---EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceE
Confidence 9999986655 8999999999999999999999999999999999999999999887753
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=226.58 Aligned_cols=342 Identities=20% Similarity=0.257 Sum_probs=220.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH--------hCCCCC-eEEEechHHHH-HHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF--------KGNYGP-HLIIVPNAVLV-NWKSEL 1069 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~--------kg~~GP-~LIVVP~SLL~-QW~~Ef 1069 (2240)
..-|.|..++--++. +.+.|...|+|+|||...+..|...+.. +...|| .+|++|+.-|. |...|-
T Consensus 267 eptpIqR~aipl~lQ----~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGLQ----NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccchhc----cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 456788888876665 7788999999999997766554433322 222344 58888998655 466777
Q ss_pred HHHCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchhHHHHHh
Q 000099 1070 HKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (2240)
Q Consensus 1070 ~Kw~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~SKlskaL 1145 (2240)
.+|.. +++++.+.|+..-..+-| -.....+|+|.|++.|+... ..|..-...|||+|||++|....
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~f---qls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmg------- 412 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGF---QLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMG------- 412 (673)
T ss_pred HHhcccccceEEEEecccchhhhhh---hhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhccc-------
Confidence 77753 467777777654332211 12456799999999998653 34555678999999999985411
Q ss_pred hccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000099 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (2240)
Q Consensus 1146 k~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr 1225 (2240)
|. .++..+|..+ |..+... +.+..+.++ ++.+.+
T Consensus 413 --fE----------------~dv~~iL~~m-----------------Pssn~k~----~tde~~~~~------~~~~~~- 446 (673)
T KOG0333|consen 413 --FE----------------PDVQKILEQM-----------------PSSNAKP----DTDEKEGEE------RVRKNF- 446 (673)
T ss_pred --cc----------------HHHHHHHHhC-----------------CccccCC----CccchhhHH------HHHhhc-
Confidence 10 0111111111 1111100 000111111 111111
Q ss_pred HHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1226 PFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
.-. | --.........|++.-..+-+.++..-..... +. .. -
T Consensus 447 --~~~--k-------~yrqT~mftatm~p~verlar~ylr~pv~vti-g~----~g-----------------------k 487 (673)
T KOG0333|consen 447 --SSS--K-------KYRQTVMFTATMPPAVERLARSYLRRPVVVTI-GS----AG-----------------------K 487 (673)
T ss_pred --ccc--c-------ceeEEEEEecCCChHHHHHHHHHhhCCeEEEe-cc----CC-----------------------C
Confidence 000 0 00112233345555444443333222111000 00 00 0
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHH
Q 000099 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (2240)
Q Consensus 1306 NHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERee 1385 (2240)
++|.+. -.-+.+..+.|+..|..||... ....+|||.+....+|.|++.|...||.+++|||+-++++|+.
T Consensus 488 ~~~rve-------Q~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 488 PTPRVE-------QKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred Cccchh-------eEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 111110 0112345567888899988875 4679999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1386 aIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+|..|+.+..+ ||++|+++|+|||++++.+||+||..-+...|.|||||++|.|+...+..|+-
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt 622 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLT 622 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEec
Confidence 99999987777 89999999999999999999999999999999999999999999888766543
|
|
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-21 Score=201.51 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
+.+.|+++++.|...+|++||.++++|+.+|+|+++||||++ |++||||.+|++||++ |.++.+|..||.|||+||+
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~~pdYy~i-I~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na~ 78 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKDYPDYYKI-IKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNAR 78 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCccccCccHHHH-hcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999 9999999999999998 9999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLK 2043 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k 2043 (2240)
.||+++|.+|.+|..|+++|.+++.
T Consensus 79 ~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 79 LYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999875
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=238.70 Aligned_cols=316 Identities=18% Similarity=0.130 Sum_probs=200.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-slk 1077 (2240)
+|+|+|.+++.-+ +..+.|.|++.+||+|||+++...+...+. ..+.+|||+|.. |+.++..+|.++.+ +++
T Consensus 23 ~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 23 ELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred cCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 6999999999753 335789999999999999998766655443 346899999976 77888899988754 678
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCch--hHHHHHhhcc----c
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY----R 1149 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~~--SKlskaLk~L----k 1149 (2240)
+.++.|..+.... .....+|+|+|++.+...... ..-...++|||||+|.+.+.. ..+-..+..+ .
T Consensus 97 v~~~tGd~~~~~~------~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 97 VGISTGDYDSRDE------WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred EEEEeCCcCcccc------ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 8888886543322 124579999999987432211 111256999999999997532 2222222222 3
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmL 1229 (2240)
..+.++||||. .+..++.. |+...+... ..+|.-
T Consensus 171 ~~qii~lSATl--~n~~~la~------------------wl~~~~~~~-------------------------~~rpv~- 204 (737)
T PRK02362 171 DLQVVALSATI--GNADELAD------------------WLDAELVDS-------------------------EWRPID- 204 (737)
T ss_pred CCcEEEEcccC--CCHHHHHH------------------HhCCCcccC-------------------------CCCCCC-
Confidence 34689999996 23444433 332110000 000100
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
....+... . ...... .. + .
T Consensus 205 --------------l~~~v~~~-~--------------~~~~~~--~~------------------------~------~ 223 (737)
T PRK02362 205 --------------LREGVFYG-G--------------AIHFDD--SQ------------------------R------E 223 (737)
T ss_pred --------------CeeeEecC-C--------------eecccc--cc------------------------c------c
Confidence 00000000 0 000000 00 0 0
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc----------------------
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR---------------------- 1367 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r---------------------- 1367 (2240)
+ ....+...+ .++......++++||||..+..++.++..|...
T Consensus 224 ~--------------~~~~~~~~~-~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (737)
T PRK02362 224 V--------------EVPSKDDTL-NLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIRE 288 (737)
T ss_pred C--------------CCccchHHH-HHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 0 000011111 122223346789999999998877776666432
Q ss_pred --------------CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE----cC-----C
Q 000099 1368 --------------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-----P 1424 (2240)
Q Consensus 1368 --------------Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi----fD-----~ 1424 (2240)
...+..+||+++.++|..+.+.|+++... +|++|++++.|||+++.++||. || .
T Consensus 289 ~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~ 365 (737)
T PRK02362 289 VSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQ 365 (737)
T ss_pred ccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCce
Confidence 12466789999999999999999975544 7999999999999999988886 77 5
Q ss_pred CCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1425 DPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1425 pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
|.+...|.|++|||+|.|....-.++.+
T Consensus 366 ~~s~~~y~Qm~GRAGR~g~d~~G~~ii~ 393 (737)
T PRK02362 366 PIPVLEYHQMAGRAGRPGLDPYGEAVLL 393 (737)
T ss_pred eCCHHHHHHHhhcCCCCCCCCCceEEEE
Confidence 7889999999999999998744334434
|
|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-21 Score=199.56 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
+++.|++|++.|...+|.+||.++.+|+++|++.++||||++ |++||||.+|++||++++|.++.+|..||+|||.||+
T Consensus 1 ~~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~~pdYy~i-Ik~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 1 LKAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKLYPDYYVI-IKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred CHHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCCCcCHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
.||+++|.+|.+|+.|+++|.++
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~ 102 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKK 102 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999875
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-20 Score=222.66 Aligned_cols=314 Identities=22% Similarity=0.312 Sum_probs=213.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechHHH-HHHHH---HHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNAVL-VNWKS---ELHK 1071 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~SLL-~QW~~---Ef~K 1071 (2240)
+|.+-|...+.-++. +...+.+.-||+|||+..+..+..++.... ..--+|||||+..| .|-.. ++.+
T Consensus 104 ~MT~VQ~~ti~pll~----gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLLE----GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCccCC----CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 688888888877665 668899999999999998887666553211 11247999999865 44444 4555
Q ss_pred HCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---ccccCcceEecccccccCCc--hhHHHHHhh
Q 000099 1072 WLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDR--ESVLARDLD 1146 (2240)
Q Consensus 1072 w~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrLKN~--~SKlskaLk 1146 (2240)
+.++..+.+..|+...+... +.+.. ..+++|.|++.|..+... |.....+++|||||+|+... .--+-+.+.
T Consensus 180 ~h~~~~v~~viGG~~~~~e~--~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEA--DKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIK 256 (543)
T ss_pred hCCCcceEEEeCCccchHHH--HHhhc-cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHH
Confidence 66778887777766544332 22333 889999999999877433 22234579999999999642 233444444
Q ss_pred cccc-ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000099 1147 RYRC-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (2240)
Q Consensus 1147 ~Lks-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr 1225 (2240)
.+.. ...+++|||- .....+ |..+
T Consensus 257 ~lpk~rqt~LFSAT~-~~kV~~----------------------------------------------------l~~~-- 281 (543)
T KOG0342|consen 257 ILPKQRQTLLFSATQ-PSKVKD----------------------------------------------------LARG-- 281 (543)
T ss_pred hccccceeeEeeCCC-cHHHHH----------------------------------------------------HHHH--
Confidence 4433 3357777772 000000 0000
Q ss_pred HHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1226 PFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
.|+| | ...|.|. + ..... ....+.+-
T Consensus 282 --~L~~---d---------~~~v~~~--------------------d-~~~~~------------------The~l~Qg- 307 (543)
T KOG0342|consen 282 --ALKR---D---------PVFVNVD--------------------D-GGERE------------------THERLEQG- 307 (543)
T ss_pred --hhcC---C---------ceEeecC--------------------C-CCCcc------------------hhhcccce-
Confidence 0000 0 0011110 0 00000 00001110
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHH
Q 000099 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (2240)
Q Consensus 1306 NHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERee 1385 (2240)
-.+.....+|-+|..+|.+.... .||||||....+..++.+.|+...+++..|||..++..|..
T Consensus 308 ---------------yvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~ 371 (543)
T KOG0342|consen 308 ---------------YVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTS 371 (543)
T ss_pred ---------------EEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccch
Confidence 00112234567777777776543 89999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEE
Q 000099 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1386 aIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
+..+|...++. ||+||+++++|+|++++|.||-||+|-+|..|+||+||++|-|-+.+..
T Consensus 372 ~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~al 431 (543)
T KOG0342|consen 372 TFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKAL 431 (543)
T ss_pred HHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEE
Confidence 99999987776 8999999999999999999999999999999999999999988766543
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5e-20 Score=225.67 Aligned_cols=313 Identities=21% Similarity=0.284 Sum_probs=213.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH-HHHHHHhC---------CCCCeEEEechH-HHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI-AYLMEFKG---------NYGPHLIIVPNA-VLVNWKSE 1068 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALI-a~Lle~kg---------~~GP~LIVVP~S-LL~QW~~E 1068 (2240)
.+.|+|+.++.-+.. +++.+.|..||+|||...+..| .++++... .....||++|++ |+.|-.+|
T Consensus 96 ~ptpvQk~sip~i~~----Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 96 KPTPVQKYSIPIISG----GRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred CCCcceeeccceeec----CCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 678999999876665 8888999999999999988855 45554321 235689999988 77889999
Q ss_pred HHHHCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc---hhHH
Q 000099 1069 LHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR---ESVL 1141 (2240)
Q Consensus 1069 f~Kw~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~---~SKl 1141 (2240)
..++.- .+++++.+|..+.+... ......+||+|+|.+.+..-. ..+..-...|+|||||++|... .-.+
T Consensus 172 a~k~~~~s~~~~~~~ygg~~~~~q~---~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~I 248 (482)
T KOG0335|consen 172 ARKFSYLSGMKSVVVYGGTDLGAQL---RFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQI 248 (482)
T ss_pred HHhhcccccceeeeeeCCcchhhhh---hhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccH
Confidence 999863 46666666665555443 234678999999999987542 3333345569999999999651 2223
Q ss_pred HHHhhcc-----ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHH
Q 000099 1142 ARDLDRY-----RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVII 1216 (2240)
Q Consensus 1142 skaLk~L-----ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~li 1216 (2240)
.+.+... ....-+++|||= ...+..
T Consensus 249 r~iv~~~~~~~~~~~qt~mFSAtf-p~~iq~------------------------------------------------- 278 (482)
T KOG0335|consen 249 RKIVEQLGMPPKNNRQTLLFSATF-PKEIQR------------------------------------------------- 278 (482)
T ss_pred HHHhcccCCCCccceeEEEEeccC-Chhhhh-------------------------------------------------
Confidence 3333322 123345666651 111111
Q ss_pred HHHHHHHhhHHHHH----hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHH
Q 000099 1217 IHRLHQILEPFMLR----RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292 (2240)
Q Consensus 1217 i~RLhklLrPFmLR----RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~ 1292 (2240)
+...|+.- -...-|..........+++|.
T Consensus 279 ------l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~----------------------------------------- 311 (482)
T KOG0335|consen 279 ------LAADFLKDNYIFLAVGRVGSTSENITQKILFVN----------------------------------------- 311 (482)
T ss_pred ------hHHHHhhccceEEEEeeeccccccceeEeeeec-----------------------------------------
Confidence 11111100 000000111111112222222
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHh-------cCCeEEEEecchhHHHHHHHHHH
Q 000099 1293 TLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQR-------TGHRVLLFSTMTKLLDILEEYLQ 1365 (2240)
Q Consensus 1293 sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~a-------tGhKVLIFSQ~t~~LDiLed~L~ 1365 (2240)
...|...|..+|..... ..++++||+.....++.|+.+|.
T Consensus 312 ---------------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~ 358 (482)
T KOG0335|consen 312 ---------------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS 358 (482)
T ss_pred ---------------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh
Confidence 11222222223322220 13589999999999999999999
Q ss_pred hcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1366 ~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
..++++.-|||.-++.+|.++|+.|+.+... +||+|.++++|||+..+++||+||.|-+-..|+|||||++|.|+..
T Consensus 359 ~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G 435 (482)
T KOG0335|consen 359 SNGYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGG 435 (482)
T ss_pred cCCCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCc
Confidence 9999999999999999999999999987666 7999999999999999999999999999999999999999999998
Q ss_pred eEEEEEE
Q 000099 1446 EVKVIYM 1452 (2240)
Q Consensus 1446 eV~VyrL 1452 (2240)
.++.+.-
T Consensus 436 ~atsf~n 442 (482)
T KOG0335|consen 436 RATSFFN 442 (482)
T ss_pred eeEEEec
Confidence 8877654
|
|
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-21 Score=196.60 Aligned_cols=98 Identities=16% Similarity=0.263 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000099 1943 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2022 (2240)
Q Consensus 1943 ck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~ 2022 (2240)
.-.|+..|++.+|++||.++..|+.+|++.++||||++ |++||||.+|..||++++|.++.+|..||.|||.||+.||+
T Consensus 5 ~~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~~PdYy~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 5 LWQLYDTIRNARNNQGQLLAEPFLKLPSKRKYPDYYQE-IKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHHhhcCCCCCCccHhhhcCCCcccCCCHHHH-cCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34788889999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHH
Q 000099 2023 FSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2023 ~~sev~~dA~~L~~~F~~~ 2041 (2240)
++|.+|.+|+.|+++|..+
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-19 Score=228.79 Aligned_cols=304 Identities=20% Similarity=0.188 Sum_probs=193.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SV 1076 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-sl 1076 (2240)
.+|+|+|.+++..+. .+.+.|++.+||+|||+++...+...+.. .+.+|+|+|.. |+.++.++|.+|.. ++
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 369999999998764 37789999999999999987666555432 35789999976 67788888888653 56
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCch--hHHHHHhh---ccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLD---RYR 1149 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~--SKlskaLk---~Lk 1149 (2240)
++..+.|........ ....+|+|+|++.+..... ...-.++++|||||+|.+.+.. ..+-..+. .+.
T Consensus 94 ~v~~~~G~~~~~~~~------~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~ 167 (674)
T PRK01172 94 RVKISIGDYDDPPDF------IKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN 167 (674)
T ss_pred eEEEEeCCCCCChhh------hccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC
Confidence 777777764432211 2357999999987643211 1112357899999999996432 12222222 222
Q ss_pred -cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000099 1150 -CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (2240)
Q Consensus 1150 -s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFm 1228 (2240)
..+.++||||.- +.. .|.+|+....... ..+|
T Consensus 168 ~~~riI~lSATl~--n~~------------------~la~wl~~~~~~~-------------------------~~r~-- 200 (674)
T PRK01172 168 PDARILALSATVS--NAN------------------ELAQWLNASLIKS-------------------------NFRP-- 200 (674)
T ss_pred cCCcEEEEeCccC--CHH------------------HHHHHhCCCccCC-------------------------CCCC--
Confidence 346799999962 222 3344443221000 0000
Q ss_pred HHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000099 1229 LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (2240)
Q Consensus 1229 LRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP 1308 (2240)
.|-. ..+++.. .+| .+.. .
T Consensus 201 -----------vpl~-~~i~~~~------~~~----------~~~~-~-------------------------------- 219 (674)
T PRK01172 201 -----------VPLK-LGILYRK------RLI----------LDGY-E-------------------------------- 219 (674)
T ss_pred -----------CCeE-EEEEecC------eee----------eccc-c--------------------------------
Confidence 0100 0111000 000 0000 0
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc---------------------
Q 000099 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--------------------- 1367 (2240)
Q Consensus 1309 ~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--------------------- 1367 (2240)
. .+. .+..++.+....++++||||..+..++.+...|...
T Consensus 220 -----------~-------~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L 280 (674)
T PRK01172 220 -----------R-------SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSL 280 (674)
T ss_pred -----------c-------ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHH
Confidence 0 000 012233444456788999999988887777776542
Q ss_pred ----CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCC---------CCChhhHHHH
Q 000099 1368 ----QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP---------DPNPKNEEQA 1434 (2240)
Q Consensus 1368 ----Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~---------pWNP~~d~QA 1434 (2240)
...+..+||+++.++|..+.+.|+++..+ +|++|++++.|||+++ .+||++|. ++++..+.|+
T Consensus 281 ~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~---VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm 356 (674)
T PRK01172 281 NEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIK---VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQM 356 (674)
T ss_pred HHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHH
Confidence 11355689999999999999999975444 7999999999999996 57777664 4578889999
Q ss_pred hhhhhccCCcce
Q 000099 1435 VARAHRIGQKRE 1446 (2240)
Q Consensus 1435 iGRAhRIGQKKe 1446 (2240)
+|||+|.|....
T Consensus 357 ~GRAGR~g~d~~ 368 (674)
T PRK01172 357 IGRAGRPGYDQY 368 (674)
T ss_pred hhcCCCCCCCCc
Confidence 999999996655
|
|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=193.39 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
|+.+.++|++.|.+.+|++||.|+.+|+++|+|.++||||++ |++||||.+|++||+.++|.++.+|..||.|||.||+
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy~~-I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 80 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYYQE-ISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAK 80 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHHHH-hCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 566889999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
.||+++|.+|.+|+.|+++|...
T Consensus 81 ~yn~~~s~i~~~A~~l~~~f~~l 103 (104)
T cd05522 81 LYNENDSQEYKDAVLLEKEARLL 103 (104)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999863
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-19 Score=213.75 Aligned_cols=296 Identities=16% Similarity=0.170 Sum_probs=185.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecchhhH-----------h
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQR-----------S 1089 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkVvvy~GskdeR-----------k 1089 (2240)
.++..+||+|||.+++.++...+. ....+++++|+|.. ++.++.+.+..++.. .+..++|..... .
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~-~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIK-SQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-hCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 478899999999999988887664 34567899999965 778899999998764 344444433210 0
Q ss_pred HHHHHHH----hhcCCcEEEEcHHHHHHhhhh--------ccccCcceEecccccccCCchh-HHHHHhhccc--cceEE
Q 000099 1090 RLFSQEV----AALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKDRES-VLARDLDRYR--CQRRL 1154 (2240)
Q Consensus 1090 ~l~~qei----~~~~fdVVITTYE~L~kD~s~--------L~kikWd~VIIDEAHrLKN~~S-KlskaLk~Lk--s~~RL 1154 (2240)
....... .....+|+|+|++.+...... +..+...+|||||+|.+..... .+...+..+. ....+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 1110000 113467999999988654222 2223447899999999975322 2333333332 34579
Q ss_pred EeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 000099 1155 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1234 (2240)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKk 1234 (2240)
++|||+- ..+.. |...+......
T Consensus 160 ~~SATlp----~~l~~---------------~~~~~~~~~~~-------------------------------------- 182 (358)
T TIGR01587 160 LMSATLP----KFLKE---------------YAEKIGYVEFN-------------------------------------- 182 (358)
T ss_pred EEecCch----HHHHH---------------HHhcCCCcccc--------------------------------------
Confidence 9999952 11111 10000000000
Q ss_pred hhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 000099 1235 DVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPY 1314 (2240)
Q Consensus 1235 DVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~ 1314 (2240)
...+..... .+..|++....
T Consensus 183 ---~~~~~~~~~--------------------------------------------------------~~~~~~~~~~~- 202 (358)
T TIGR01587 183 ---EPLDLKEER--------------------------------------------------------RFERHRFIKIE- 202 (358)
T ss_pred ---cCCCCcccc--------------------------------------------------------ccccccceeec-
Confidence 000000000 00000000000
Q ss_pred ccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCc--eEEeecCCCCHHHHHH----HHH
Q 000099 1315 FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRES----AIV 1388 (2240)
Q Consensus 1315 ~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGi--ky~rLDGsTs~eERee----aIk 1388 (2240)
.....|...+..++.. ...+.++||||+....++.+...|...+. .+..+||.++..+|.+ +++
T Consensus 203 ---------~~~~~~~~~l~~l~~~-~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~ 272 (358)
T TIGR01587 203 ---------SDKVGEISSLERLLEF-IKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLE 272 (358)
T ss_pred ---------cccccCHHHHHHHHHH-hhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHH
Confidence 0001234445555533 34578999999999999999999988776 4889999999999976 488
Q ss_pred HHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc----eEEEEEE
Q 000099 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR----EVKVIYM 1452 (2240)
Q Consensus 1389 ~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK----eV~VyrL 1452 (2240)
.|.++... +|+||+++++|||+ .+++||+++.+ +..++||+||++|.|.+. .|.||+.
T Consensus 273 ~f~~~~~~---ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 273 EMKKNEKF---VIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred HhcCCCCe---EEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 99864433 79999999999999 58999998876 789999999999999764 3555544
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-18 Score=218.82 Aligned_cols=415 Identities=15% Similarity=0.182 Sum_probs=237.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.|+|||...+..++- +.|+|+...||.|||++++..+ ++.... ...++||+|+. |..+|..++..++. ++
T Consensus 68 glrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa-~l~aL~--g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPL-YLNALT--GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHH-HHHhhc--CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 378887777755543 3457999999999999987664 332222 23589999988 55666666655432 45
Q ss_pred eEEEEecc-hhh-HhHHHHHHHhhcCCcEEEEcHHHHHHh--hh-------hccccCcceEecccccccCCchhHHHHHh
Q 000099 1077 SCIYYVGA-KDQ-RSRLFSQEVAALKFNVLVTTYEFIMYD--RS-------KLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (2240)
Q Consensus 1077 kVvvy~Gs-kde-Rk~l~~qei~~~~fdVVITTYE~L~kD--~s-------~L~kikWd~VIIDEAHrLKN~~SKlskaL 1145 (2240)
.+.+..+. ... .... .......++|+++|++.|..+ +. .+....+.++||||||.|.-
T Consensus 141 sv~~~~~~s~~~~~~~~--~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi--------- 209 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDAN--EKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL--------- 209 (762)
T ss_pred cEEEEECCCCccccCHH--HHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh---------
Confidence 55554432 111 1100 011224689999999988433 11 12224678999999999842
Q ss_pred hccccceEEEeecCCCCCCHHHHHHHHhhhcccccCC------------------hHHHHhhhcCCcccCCCCCCCChhh
Q 000099 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN------------------RKAFHDWFSQPFQKEGPTHNADDDW 1207 (2240)
Q Consensus 1146 k~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S------------------~~sF~e~F~kPf~~~g~~~~~e~d~ 1207 (2240)
.. +...|++||.|-.. ..+|..++-+...+-.. .....+.|..+ + -.+
T Consensus 210 De--artpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~--~-----l~~--- 275 (762)
T TIGR03714 210 DS--AQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID--N-----LYS--- 275 (762)
T ss_pred cc--CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC--c-----cCC---
Confidence 12 33458899977533 34666654332211110 00111112110 0 000
Q ss_pred HHHHHHHHHHHHHHHHhhHH-HHHhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHHh-
Q 000099 1208 LETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR- 1278 (2240)
Q Consensus 1208 l~~Ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~e~~- 1278 (2240)
.......+.+...|+.. ++.|-+.=+.. +....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 276 ---~~~~~~~~~i~~al~A~~~~~~d~dYiV~---~~~v~ivD-~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a 348 (762)
T TIGR03714 276 ---EEYFELVRHINLALRAHYLFKRNKDYVVT---NGEVVLLD-RITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMA 348 (762)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHhcCCceEEE---CCEEEEEE-CCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeee
Confidence 11112233444444443 33322221111 11111211 222 2334444555443322222111000
Q ss_pred -----hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhcCCeEE
Q 000099 1279 -----RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRVL 1348 (2240)
Q Consensus 1279 -----~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~l-----s~d~LirsSGKLelLdrIL~kL~atGhKVL 1348 (2240)
..+.......+...........|.++-+.+.+..|..... ..........|+..+...+..+...+..||
T Consensus 349 ~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvL 428 (762)
T TIGR03714 349 SITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVL 428 (762)
T ss_pred eeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEE
Confidence 0000000000000011122345566665555444432211 111223345688888888888888899999
Q ss_pred EEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCC---------CCCeE
Q 000099 1349 LFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ---------SADTV 1419 (2240)
Q Consensus 1349 IFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQ---------aADtV 1419 (2240)
|||..+...+.|...|...|+++..|+|.+...+|..+...|+.+ -++|+|+.+|+|+|+. ..++|
T Consensus 429 Ift~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g-----~VlIATdmAgRGtDI~l~~~v~~~GGL~vI 503 (762)
T TIGR03714 429 LITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG-----AVTVATSMAGRGTDIKLGKGVAELGGLAVI 503 (762)
T ss_pred EEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC-----eEEEEccccccccCCCCCccccccCCeEEE
Confidence 999999999999999999999999999999988887766666532 2799999999999999 88999
Q ss_pred EEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1420 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1420 IifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
|.|+++-+... .|+.||++|.|.+..+..| ++.++.++.
T Consensus 504 it~~~ps~rid-~qr~GRtGRqG~~G~s~~~--is~eD~l~~ 542 (762)
T TIGR03714 504 GTERMENSRVD-LQLRGRSGRQGDPGSSQFF--VSLEDDLIK 542 (762)
T ss_pred EecCCCCcHHH-HHhhhcccCCCCceeEEEE--Eccchhhhh
Confidence 99999987655 9999999999988775443 444555543
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.1e-19 Score=211.91 Aligned_cols=121 Identities=23% Similarity=0.395 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhc----------------------CceEEeecCCCCHHHHH
Q 000099 1329 KLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR----------------------QLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1329 KLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~r----------------------Giky~rLDGsTs~eERe 1384 (2240)
++..|..+|.... ....|+|||...+++++.=.+.|... +.++.+|||+|++++|.
T Consensus 408 RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRt 487 (708)
T KOG0348|consen 408 RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERT 487 (708)
T ss_pred hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHH
Confidence 4445556665543 23458999999998887766555321 45699999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
.++..|.... ..+|+||+++++||||+.++.||-||+|..+..|++|+||+.|+|.+.+...|-+
T Consensus 488 s~f~~Fs~~~---~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~ 552 (708)
T KOG0348|consen 488 SVFQEFSHSR---RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLL 552 (708)
T ss_pred HHHHhhcccc---ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEec
Confidence 9999998633 3489999999999999999999999999999999999999999999988766655
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=206.73 Aligned_cols=305 Identities=18% Similarity=0.228 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHC--CCCeEE
Q 000099 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWL--PSVSCI 1079 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~Kw~--PslkVv 1079 (2240)
..|..++..++. +.+.|.-...|+|||.+...-++.......+.-.+||+.|+..|.- ...-+.... -++.+.
T Consensus 52 ~IQqrAi~~Ilk----GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 52 AIQQRAIPQILK----GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHHhhhhhhhhc----ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 457888887776 8888999999999998753333332222333346899999986654 444444443 256777
Q ss_pred EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCCc--hhHHHHHhhccc-cceEE
Q 000099 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQRRL 1154 (2240)
Q Consensus 1080 vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk-s~~RL 1154 (2240)
.+.|+...-..+. ......+||..|++.+.+. +..|.-...+++|+|||+.|.|. ..+++...+.+. ....+
T Consensus 128 acigg~n~gedik---kld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv 204 (400)
T KOG0328|consen 128 ACIGGKNLGEDIK---KLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVV 204 (400)
T ss_pred EEecCCccchhhh---hhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEE
Confidence 7777765433332 1224568999999998765 34566678899999999999764 456777777776 55689
Q ss_pred EeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 000099 1155 LLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVE 1234 (2240)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKk 1234 (2240)
++|||- ..|+..+.++.+++.
T Consensus 205 ~~SATl----p~eilemt~kfmtdp------------------------------------------------------- 225 (400)
T KOG0328|consen 205 LVSATL----PHEILEMTEKFMTDP------------------------------------------------------- 225 (400)
T ss_pred EEeccC----cHHHHHHHHHhcCCc-------------------------------------------------------
Confidence 999994 233333333322221
Q ss_pred hhccCCCCceEEEEEe-ccCHH-HHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000099 1235 DVEGSLPPKVSIVLRC-RMSAI-QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (2240)
Q Consensus 1235 DVekdLP~KvE~vV~c-~LS~~-Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~ 1312 (2240)
+...++- .++.+ -+.+|-.+ +.
T Consensus 226 ---------vrilvkrdeltlEgIKqf~v~v--------e~--------------------------------------- 249 (400)
T KOG0328|consen 226 ---------VRILVKRDELTLEGIKQFFVAV--------EK--------------------------------------- 249 (400)
T ss_pred ---------eeEEEecCCCchhhhhhheeee--------ch---------------------------------------
Confidence 1111110 01110 00111000 00
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhc
Q 000099 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (2240)
Q Consensus 1313 p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs 1392 (2240)
..=|+..|..+-..| +=...+|||+.....|+|.+.++..++.+..+||.+++++|.+++.+|++
T Consensus 250 -------------EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs 314 (400)
T KOG0328|consen 250 -------------EEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS 314 (400)
T ss_pred -------------hhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc
Confidence 000233333332222 12368999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceE
Q 000099 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1393 ~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV 1447 (2240)
+.+. +|++|++-++|+|+|.++.||+||+|-|+..|+||+||.+|.|.+.-+
T Consensus 315 g~Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGva 366 (400)
T KOG0328|consen 315 GKSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 366 (400)
T ss_pred CCce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceE
Confidence 8887 899999999999999999999999999999999999999999976543
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=226.60 Aligned_cols=314 Identities=16% Similarity=0.104 Sum_probs=193.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-slk 1077 (2240)
+|+|+|.+++.- .+..+.|.|++.+||+|||+++...|...+.. ..+.+|+|||.. ++.++..+|.+|.. +++
T Consensus 23 ~l~~~Q~~ai~~---~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 23 ELYPPQAEALKS---GVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCHHHHHHHHH---HHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 799999999963 22347899999999999999985554433321 246899999976 67888888888753 577
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCC--chhHHHHHhhccc-cce
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQR 1152 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN--~~SKlskaLk~Lk-s~~ 1152 (2240)
+..++|.-..... .....+|+|+|++.+...... ..-.++++|||||+|.+.. ....+...+..+. ..+
T Consensus 98 v~~~~Gd~~~~~~------~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~q 171 (720)
T PRK00254 98 VAMTTGDYDSTDE------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQ 171 (720)
T ss_pred EEEEeCCCCCchh------hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCc
Confidence 8888886543221 124679999999987543211 0113578999999999964 3334444444443 456
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
.++||||.- +..++ .+|+....... ..+|.
T Consensus 172 iI~lSATl~--n~~~l------------------a~wl~~~~~~~-------------------------~~rpv----- 201 (720)
T PRK00254 172 ILGLSATVG--NAEEL------------------AEWLNAELVVS-------------------------DWRPV----- 201 (720)
T ss_pred EEEEEccCC--CHHHH------------------HHHhCCccccC-------------------------CCCCC-----
Confidence 899999962 23443 33332211000 00000
Q ss_pred hhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000099 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~ 1312 (2240)
|-. ..+... ........ ... .+
T Consensus 202 --------~l~--~~~~~~---------------~~~~~~~~-~~~--------------~~------------------ 223 (720)
T PRK00254 202 --------KLR--KGVFYQ---------------GFLFWEDG-KIE--------------RF------------------ 223 (720)
T ss_pred --------cce--eeEecC---------------CeeeccCc-chh--------------cc------------------
Confidence 000 000000 00000000 000 00
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh--------------------------
Q 000099 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW-------------------------- 1366 (2240)
Q Consensus 1313 p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~-------------------------- 1366 (2240)
...+..++.++...+.++||||..+..++.++..|..
T Consensus 224 -----------------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (720)
T PRK00254 224 -----------------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPT 286 (720)
T ss_pred -----------------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Confidence 0001112223334578899999888776655444321
Q ss_pred -------cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE-------cCCCC-ChhhH
Q 000099 1367 -------RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-------YDPDP-NPKNE 1431 (2240)
Q Consensus 1367 -------rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi-------fD~pW-NP~~d 1431 (2240)
....+..+||+++.++|..+.+.|+++... +|++|++++.|||+++.++||. |+.++ ....+
T Consensus 287 ~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~ 363 (720)
T PRK00254 287 NEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEI 363 (720)
T ss_pred cHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHH
Confidence 123477799999999999999999975544 7999999999999999888884 33333 34578
Q ss_pred HHHhhhhhccCCcceEEEEEE
Q 000099 1432 EQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1432 ~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
.|++|||+|.|....-.++.+
T Consensus 364 ~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 364 QQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred HHhhhccCCCCcCCCceEEEE
Confidence 999999999886554444444
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-18 Score=226.52 Aligned_cols=101 Identities=18% Similarity=0.282 Sum_probs=86.3
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH-----HHHHHHhc----CC----CCccEEEEeccccc
Q 000099 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE-----SAIVDFNS----HD----SDCFIFLLSIRAAG 1408 (2240)
Q Consensus 1342 atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe-----eaIk~FNs----~D----s~~fVfLLSTrAGG 1408 (2240)
..+.++||||+.+..++.|.+.|...++ ..|||.+++.+|. .++++|.. +. .+-..|||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4567999999999999999999998887 8899999999999 78999975 21 01135799999999
Q ss_pred ccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceE
Q 000099 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1409 eGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV 1447 (2240)
+|||+.. ++||+++.|+ ..|+||+||++|.|.....
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCc
Confidence 9999985 9999988774 7999999999999986544
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=219.69 Aligned_cols=357 Identities=17% Similarity=0.204 Sum_probs=227.6
Q ss_pred cCCCCCcHHHHHHHHHHHHhhcCC-CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHHC
Q 000099 996 LRAGTLRDYQIVGLQWMLSLYNNK-LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKWL 1073 (2240)
Q Consensus 996 L~ggtLRPYQleGLqwLlsL~~n~-lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~Kw~ 1073 (2240)
+....+|+||..++..++..+.++ ...||++.||+|||.+||++|..|+. .+..+++|+++- ++|+.|-..+|..|.
T Consensus 161 ~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~~~~ 239 (875)
T COG4096 161 DSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK-SGWVKRVLFLADRNALVDQAYGAFEDFL 239 (875)
T ss_pred cccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh-cchhheeeEEechHHHHHHHHHHHHHhC
Confidence 344689999999999999888654 44799999999999999999999986 667789999997 668899999999999
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh-------hhccccCcceEecccccccCCchhHHHHHhh
Q 000099 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR-------SKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (2240)
Q Consensus 1074 PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~-------s~L~kikWd~VIIDEAHrLKN~~SKlskaLk 1146 (2240)
|....+....... ....+.|+|+||.++.... ..+..-.||+||||||||- ....++.+.
T Consensus 240 P~~~~~n~i~~~~----------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I~ 306 (875)
T COG4096 240 PFGTKMNKIEDKK----------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---IYSEWSSIL 306 (875)
T ss_pred CCccceeeeeccc----------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---HHhhhHHHH
Confidence 9876554433221 1225799999999998643 2344457999999999994 344455666
Q ss_pred ccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
.|-...+++|||||-..--.+-+.+|+ ..|...+. |...+
T Consensus 307 dYFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~Ys---------------------leeAV-- 346 (875)
T COG4096 307 DYFDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYAYS---------------------LEEAV-- 346 (875)
T ss_pred HHHHHHHHhhccCcccccccccccccC-----------------CCcceeec---------------------HHHHh--
Confidence 666677788899996532222222221 22222110 00000
Q ss_pred HHHHhhhhhhccCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1227 FMLRRRVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~Kv-E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
+..++ .|.+. ...+.+....+ ..+...+....... ..
T Consensus 347 ------~DGfL--vpy~vi~i~~~~~~~G~--------------~~~~~serek~~g~--------------------~i 384 (875)
T COG4096 347 ------EDGFL--VPYKVIRIDTDFDLDGW--------------KPDAGSEREKLQGE--------------------AI 384 (875)
T ss_pred ------hcccc--CCCCceEEeeeccccCc--------------CcCccchhhhhhcc--------------------cc
Confidence 00111 12211 12222211110 00000000000000 00
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhc---C---CeEEEEecchhHHHHHHHHHHhc-----CceEEee
Q 000099 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT---G---HRVLLFSTMTKLLDILEEYLQWR-----QLVYRRI 1374 (2240)
Q Consensus 1306 NHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~at---G---hKVLIFSQ~t~~LDiLed~L~~r-----Giky~rL 1374 (2240)
+.. ...++....+..+......+.+.+.|...... | .|.||||....+++.|...|... |--+..|
T Consensus 385 ~~d---d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~I 461 (875)
T COG4096 385 DED---DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKI 461 (875)
T ss_pred Ccc---cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEE
Confidence 000 00000011111122223345555555555444 3 58999999999999999999765 2335678
Q ss_pred cCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccC-------Ccce-
Q 000099 1375 DGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG-------QKRE- 1446 (2240)
Q Consensus 1375 DGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIG-------QKKe- 1446 (2240)
+|.... =+..|+.|-. ..++..|.+|.+.+.+|||++.|-.+||+-.-.+-..|.|.+||+-|+. |.|+
T Consensus 462 T~d~~~--~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~ 538 (875)
T COG4096 462 TGDAEQ--AQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEF 538 (875)
T ss_pred eccchh--hHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCcccccee
Confidence 887654 4567888876 5677789999999999999999999999999999999999999999973 4444
Q ss_pred EEEEEEeh
Q 000099 1447 VKVIYMEA 1454 (2240)
Q Consensus 1447 V~VyrLvT 1454 (2240)
..|+.++-
T Consensus 539 F~ifDf~~ 546 (875)
T COG4096 539 FTIFDFVD 546 (875)
T ss_pred EEEEEhhh
Confidence 56677654
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-17 Score=207.74 Aligned_cols=413 Identities=17% Similarity=0.199 Sum_probs=229.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH----HHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN----WKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q----W~~Ef~Kw~ 1073 (2240)
|...+|-|+.|+--++. + .|.-..||.|||++++..+..... . ...++||+|+..|.+ |...|.+++
T Consensus 101 g~~p~~VQ~~~~~~ll~----G--~Iae~~TGeGKTla~~lp~~~~al-~--G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 101 GQRHFDVQLMGGLALLS----G--RLAEMQTGEGKTLTATLPAGTAAL-A--GLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCCChHHHHHHHHHhC----C--CeeeeeCCCCcHHHHHHHHHHHhh-c--CCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 44666779988876664 3 388899999999998766654432 2 247899999986643 666666655
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHH-----Hhhh-----------------------hccccCcce
Q 000099 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM-----YDRS-----------------------KLSKVDWKY 1125 (2240)
Q Consensus 1074 PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~-----kD~s-----------------------~L~kikWd~ 1125 (2240)
++++.++.|+..... .......+|+++|-.-|- .... .+-...+.+
T Consensus 172 -Glsv~~i~gg~~~~~-----r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 172 -GLTVGCVVEDQSPDE-----RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred -CCEEEEEeCCCCHHH-----HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 577777666543211 112346799999965442 2211 111246899
Q ss_pred EecccccccCCchhHHHHHhhccccceEEEeecCCCCCCHHHHHH----HHhhhcccc-cC----------C--h-HHHH
Q 000099 1126 IIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWS----LLNLLLPEV-FD----------N--R-KAFH 1187 (2240)
Q Consensus 1126 VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwS----LLnFLlP~i-F~----------S--~-~sF~ 1187 (2240)
+||||++-+. +.. +..-|++||.+-.....++|. +..-|..+. |. + . ....
T Consensus 246 aIvDEvDSiL---------iDe--artpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e 314 (656)
T PRK12898 246 AIVDEADSVL---------IDE--ARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIA 314 (656)
T ss_pred eEeeccccee---------ecc--CCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHH
Confidence 9999999874 222 334588888553332234443 333332221 10 0 0 0001
Q ss_pred hhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH-HHHhhhhhhccCCCCceEEEEEeccC-------HHHHHH
Q 000099 1188 DWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAI 1259 (2240)
Q Consensus 1188 e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~L 1259 (2240)
+.|.. +. ..|... ....+.+...|+.. ++.+-+.-| +.+....+| ...| .+..-+
T Consensus 315 ~~~~~-l~---------~~~~~~---~~~~~~i~~Al~A~~l~~~d~dYi---V~d~~V~iv-D~~TGR~~~gr~w~~GL 377 (656)
T PRK12898 315 ELAES-LP---------PAWRGA---VRREELVRQALSALHLFRRDEHYI---VRDGKVVIV-DEFTGRVMPDRSWEDGL 377 (656)
T ss_pred HHhCc-ch---------hhcccc---hHHHHHHHHHHHHHHHHhcCCceE---EECCeEEEE-ECCCCeECCCCCcChHH
Confidence 11100 00 000000 01122233333332 222222111 112222222 2322 233444
Q ss_pred HHHHHHccCcccCchhHHh------hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hh-hHhhccc
Q 000099 1260 YDWIKATGTLRVDPEDEKR------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KD-FLVKSCG 1328 (2240)
Q Consensus 1260 Yk~L~~~~~l~ld~~~e~~------~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls----~d-~LirsSG 1328 (2240)
.+.+.....+.+....... ..+...........++......|.++-+-..+..|...... .. .......
T Consensus 378 hQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~ 457 (656)
T PRK12898 378 HQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAA 457 (656)
T ss_pred HHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHH
Confidence 4444433222222111100 00000000000001111223455555444333322221110 11 1223446
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000099 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (2240)
Q Consensus 1329 KLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGG 1408 (2240)
|+..|..++..+...+..|||||..+..++.|...|...|+++..|||... +|+..+..|...... |||+|+.+|
T Consensus 458 K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATdmAg 532 (656)
T PRK12898 458 KWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATNMAG 532 (656)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEccchh
Confidence 888888888887777889999999999999999999999999999999865 555666666543444 899999999
Q ss_pred ccCCCC---CCC-----eEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhh
Q 000099 1409 RGLNLQ---SAD-----TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIS 1460 (2240)
Q Consensus 1409 eGLNLQ---aAD-----tVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~ 1460 (2240)
+|+|+. .+. +||+||.|-|...|.|++||++|.|....+..| ++.++.++
T Consensus 533 RGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~--is~eD~l~ 590 (656)
T PRK12898 533 RGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI--LSLEDDLL 590 (656)
T ss_pred cccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE--echhHHHH
Confidence 999998 454 999999999999999999999999987666443 44455544
|
|
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-19 Score=185.50 Aligned_cols=106 Identities=24% Similarity=0.387 Sum_probs=100.9
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhcc---CCCCCHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR---LEYNGVMELVSDVQ 2011 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~---~eY~~v~ef~~Dvq 2011 (2240)
|++.-+++|.+|+.+|.. |..+..|+.++.+ ++|+||++ |++||||.+|++||+. +.|.++++|..||.
T Consensus 1 ~~~~~~~~c~~il~~l~~------~~~s~~F~~pv~~-~~p~Y~~i-I~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~ 72 (109)
T cd05502 1 LSPIDQRKCERLLLELYC------HELSLPFHEPVSP-SVPNYYKI-IKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVR 72 (109)
T ss_pred CCHHHHHHHHHHHHHHHh------CCCChhhcCCCCC-CCCCHHHH-CCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHH
Confidence 567888999999999963 5889999999998 99999999 9999999999999998 59999999999999
Q ss_pred HHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000099 2012 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 2048 (2240)
Q Consensus 2012 LMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~ 2048 (2240)
|||.||+.||+++|.++.+|..|+++|..+|+.+|||
T Consensus 73 li~~Na~~yN~~~s~i~~~a~~l~~~f~~~~~~~~p~ 109 (109)
T cd05502 73 LMFKNCYKFNEEDSEVAQAGKELELFFEEQLKEILPD 109 (109)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999999999999997
|
Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-19 Score=208.50 Aligned_cols=311 Identities=26% Similarity=0.351 Sum_probs=211.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHH------hCCCCCe-EEEechHHHHHHHHHHH-
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEF------KGNYGPH-LIIVPNAVLVNWKSELH- 1070 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~------kg~~GP~-LIVVP~SLL~QW~~Ef~- 1070 (2240)
...|.|..|+.-+++ +..-|=-.-||+|||+++...+.. .++. ....||+ |||||...|.....++-
T Consensus 192 ~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 355778888877776 555455556999999886654332 2221 2344665 99999986655444432
Q ss_pred HH--------CCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--h
Q 000099 1071 KW--------LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--E 1138 (2240)
Q Consensus 1071 Kw--------~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~ 1138 (2240)
.| +|.++...+.|+...+.++ +......+|+|.|++.++... ..+...-..|+.+|||+||..- .
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql---~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFE 344 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQL---DVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFE 344 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHH---HHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccch
Confidence 22 3778888888888777665 455678899999999997642 3344445789999999999652 3
Q ss_pred hHHHHHhhccccce-EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHH
Q 000099 1139 SVLARDLDRYRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIII 1217 (2240)
Q Consensus 1139 SKlskaLk~Lks~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii 1217 (2240)
.-+...+..|+..+ .||+|||- |.- ...|..
T Consensus 345 ddir~iF~~FK~QRQTLLFSATM----------------P~K---IQ~FAk----------------------------- 376 (610)
T KOG0341|consen 345 DDIRTIFSFFKGQRQTLLFSATM----------------PKK---IQNFAK----------------------------- 376 (610)
T ss_pred hhHHHHHHHHhhhhheeeeeccc----------------cHH---HHHHHH-----------------------------
Confidence 33444444555554 67888882 100 000100
Q ss_pred HHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHH
Q 000099 1218 HRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 1297 (2240)
Q Consensus 1218 ~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~ni 1297 (2240)
..++.|. +|.+- ..+. .-++.
T Consensus 377 ---SALVKPv-------------------tvNVG-------------RAGA------------------------AsldV 397 (610)
T KOG0341|consen 377 ---SALVKPV-------------------TVNVG-------------RAGA------------------------ASLDV 397 (610)
T ss_pred ---hhcccce-------------------EEecc-------------cccc------------------------cchhH
Confidence 0011110 01100 0000 00011
Q ss_pred HHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCC
Q 000099 1298 CMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 1377 (2240)
Q Consensus 1298 lmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGs 1377 (2240)
+.++- .+..-.|+ ..+|.-|..+.-.|||||.-..-.|.|.+||-..|+..+.|||+
T Consensus 398 iQevE--------------------yVkqEaKi---VylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGG 454 (610)
T KOG0341|consen 398 IQEVE--------------------YVKQEAKI---VYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGG 454 (610)
T ss_pred HHHHH--------------------HHHhhhhh---hhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecC
Confidence 11110 11122333 33455556788899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1378 Ts~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
..+++|...|+.|+.+..+ +|++|++++-|||+++..+||+||.|-.-.+|++||||++|-|.+.-.+.|
T Consensus 455 KDQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTf 524 (610)
T KOG0341|consen 455 KDQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTF 524 (610)
T ss_pred cchhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeee
Confidence 9999999999999987777 899999999999999999999999999999999999999999988665544
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=210.55 Aligned_cols=307 Identities=19% Similarity=0.217 Sum_probs=225.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~PslkV 1078 (2240)
..|+-|.++++.++. +.+.|...+||.||++..-... ++ ..|.+|||.|. +|+.+.++.+... ++.+
T Consensus 17 ~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPA--ll----~~G~TLVVSPLiSLM~DQV~~l~~~--Gi~A 84 (590)
T COG0514 17 SFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPA--LL----LEGLTLVVSPLISLMKDQVDQLEAA--GIRA 84 (590)
T ss_pred ccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHH--Hh----cCCCEEEECchHHHHHHHHHHHHHc--Ccee
Confidence 688899999999987 7889999999999997764332 22 25799999995 6888888888874 3555
Q ss_pred EEEecc--hhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCC-------chhHHHHHhhc
Q 000099 1079 IYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD-------RESVLARDLDR 1147 (2240)
Q Consensus 1079 vvy~Gs--kdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN-------~~SKlskaLk~ 1147 (2240)
.....+ .+++..++. ....+..+++..++|.+... .+.|...+..+++|||||.+-. ....+......
T Consensus 85 ~~lnS~l~~~e~~~v~~-~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~ 163 (590)
T COG0514 85 AYLNSTLSREERQQVLN-QLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG 163 (590)
T ss_pred ehhhcccCHHHHHHHHH-HHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhh
Confidence 555443 455555443 45567789999999999865 4667788999999999999843 33445555556
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
|...-+++||||--.....|+...|..-.+.+|. ..|+.|-
T Consensus 164 ~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~------~sfdRpN--------------------------------- 204 (590)
T COG0514 164 LPNPPVLALTATATPRVRDDIREQLGLQDANIFR------GSFDRPN--------------------------------- 204 (590)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEE------ecCCCch---------------------------------
Confidence 6766799999997666666666666544443321 1111110
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
-.|.....
T Consensus 205 ------------------------------i~~~v~~~------------------------------------------ 212 (590)
T COG0514 205 ------------------------------LALKVVEK------------------------------------------ 212 (590)
T ss_pred ------------------------------hhhhhhhc------------------------------------------
Confidence 00000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
..++..++ -+.......+...||||..+..++.+..+|...|+....+||++..++|+.+-
T Consensus 213 ------------------~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q 273 (590)
T COG0514 213 ------------------GEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQ 273 (590)
T ss_pred ------------------ccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHH
Confidence 00000111 01111123345689999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
++|..++.. ++++|.|.|.|||-+++.+|||||+|-+...|.|-+|||+|-|...++.+++-
T Consensus 274 ~~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~ 335 (590)
T COG0514 274 QAFLNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYS 335 (590)
T ss_pred HHHhcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeec
Confidence 999986666 89999999999999999999999999999999999999999998888877654
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-16 Score=208.06 Aligned_cols=408 Identities=15% Similarity=0.198 Sum_probs=229.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH----HHHHHHHHCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN----WKSELHKWLPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q----W~~Ef~Kw~Ps 1075 (2240)
..++.|+.| .++- ..|.|....||.|||++++..+..... ....++||+|+..|.. |...+.+|+ +
T Consensus 78 ~p~~vQl~~--~~~l----~~G~Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~~l~~~l-G 147 (790)
T PRK09200 78 RPYDVQLIG--ALVL----HEGNIAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMGQVYEFL-G 147 (790)
T ss_pred CCchHHHHh--HHHH----cCCceeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHHHHHhhc-C
Confidence 344445555 4433 224489999999999988665542222 2347899999986643 666666665 5
Q ss_pred CeEEEEecchh-hHhHHHHHHHhhcCCcEEEEcHHHH-----HHhhh----hccccCcceEecccccccCCchhHHHHHh
Q 000099 1076 VSCIYYVGAKD-QRSRLFSQEVAALKFNVLVTTYEFI-----MYDRS----KLSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (2240)
Q Consensus 1076 lkVvvy~Gskd-eRk~l~~qei~~~~fdVVITTYE~L-----~kD~s----~L~kikWd~VIIDEAHrLKN~~SKlskaL 1145 (2240)
+.+.++.|... ...+ ......+|+++|...+ ..... .+....+.++||||+|.|. +
T Consensus 148 l~v~~i~g~~~~~~~r-----~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL---------i 213 (790)
T PRK09200 148 LTVGLNFSDIDDASEK-----KAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL---------L 213 (790)
T ss_pred CeEEEEeCCCCcHHHH-----HHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce---------e
Confidence 77777776544 2211 1124579999997665 32211 1223478999999999985 2
Q ss_pred hccccceEEEeecCCCCCCHHHHHHHHhh----hcccc-cC----------Ch---HHHHhhhcCCcccCCCCCCCChhh
Q 000099 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNL----LLPEV-FD----------NR---KAFHDWFSQPFQKEGPTHNADDDW 1207 (2240)
Q Consensus 1146 k~Lks~~RLLLTGTPLQNnL~ELwSLLnF----LlP~i-F~----------S~---~sF~e~F~kPf~~~g~~~~~e~d~ 1207 (2240)
.. +..-|++||.+-.. ..+|...+. |..+. |. +. ....+.|..+ . .+
T Consensus 214 De--a~tpliisg~~~~~--~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~-------~----l~ 278 (790)
T PRK09200 214 DE--AQTPLIISGKPRVQ--SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGID-------N----LY 278 (790)
T ss_pred cc--CCCceeeeCCCccc--cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCc-------c----cc
Confidence 22 22347788754322 235544432 22210 00 00 0011111110 0 00
Q ss_pred HHHHHHHHHHHHHHHHhhH-HHHHhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHHh-
Q 000099 1208 LETEKKVIIIHRLHQILEP-FMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR- 1278 (2240)
Q Consensus 1208 l~~Ee~~lii~RLhklLrP-FmLRRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~e~~- 1278 (2240)
. ......++.+...|+. +++.+-+.=+. .+....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 279 ~--~~~~~~~~~i~~Al~A~~~~~~d~dYiV---~~~~v~ivD-~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a 352 (790)
T PRK09200 279 S--LEHQVLYRHIILALRAHVLFKRDVDYIV---YDGEIVLVD-RFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMA 352 (790)
T ss_pred C--hhhhHHHHHHHHHHHHHHHhhcCCcEEE---ECCEEEEEE-CCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehh
Confidence 0 0001112233333333 22222221111 111111111 111 2333444444433322222211000
Q ss_pred hhhcChhhHHHHHHH-------HHHHHHHHHHHcCCCCCCCCCccc-----cchhhHhhcccHHHHHHHHHHHHHhcCCe
Q 000099 1279 RVQKNPIYQAKVYKT-------LNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHR 1346 (2240)
Q Consensus 1279 ~l~~~~~~~ak~~~s-------L~nilmqLRKICNHP~L~~p~~~~-----ls~d~LirsSGKLelLdrIL~kL~atGhK 1346 (2240)
.+..... -+.|.. ....-..+.++-+.+.+..|.... ...........|+..|...+......+..
T Consensus 353 ~It~q~~--fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~p 430 (790)
T PRK09200 353 SITIQNL--FRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRP 430 (790)
T ss_pred hhhHHHH--HHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCC
Confidence 0000000 000111 111123555665555444443221 11112234456888888888877778999
Q ss_pred EEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCC---CCCC-----e
Q 000099 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNL---QSAD-----T 1418 (2240)
Q Consensus 1347 VLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNL---QaAD-----t 1418 (2240)
|||||.....++.|...|...|+++..|+|.+...++..+...|.. +. ++|+|+.+|+|+|+ +.+. +
T Consensus 431 vLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g~---VlIATdmAgRG~DI~l~~~V~~~GGL~ 505 (790)
T PRK09200 431 VLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--GA---VTVATNMAGRGTDIKLGEGVHELGGLA 505 (790)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--Ce---EEEEccchhcCcCCCcccccccccCcE
Confidence 9999999999999999999999999999999988887777666653 23 79999999999999 5777 9
Q ss_pred EEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1419 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1419 VIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
||+||.|-|+..|.|+.||++|.|....+..| ++.++.++.
T Consensus 506 VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~--is~eD~l~~ 546 (790)
T PRK09200 506 VIGTERMESRRVDLQLRGRSGRQGDPGSSQFF--ISLEDDLLK 546 (790)
T ss_pred EEeccCCCCHHHHHHhhccccCCCCCeeEEEE--EcchHHHHH
Confidence 99999999999999999999999988766443 455666554
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-17 Score=213.69 Aligned_cols=372 Identities=14% Similarity=0.108 Sum_probs=206.3
Q ss_pred CCCcHHHHHHHHHHHHhhcC------CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNN------KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHK 1071 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n------~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~K 1071 (2240)
.-.|+||..+|+.++....+ ..+|||++.+|+|||++++.++..|+. .....++|||||. .|..||..+|..
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~-~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE-LLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh-hcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 35789999999999877643 457999999999999999998888774 3445689999995 488999999999
Q ss_pred HCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh-hhhcccc----CcceEecccccccCCchhHHHHHhh
Q 000099 1072 WLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD-RSKLSKV----DWKYIIIDEAQRMKDRESVLARDLD 1146 (2240)
Q Consensus 1072 w~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD-~s~L~ki----kWd~VIIDEAHrLKN~~SKlskaLk 1146 (2240)
+.+... .-.++..... .........|+|||++.+... ...+... ...+||+|||||... ..+...+.
T Consensus 316 ~~~~~~--~~~~s~~~L~----~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l~ 387 (667)
T TIGR00348 316 LQKDCA--ERIESIAELK----RLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--GELAKNLK 387 (667)
T ss_pred hCCCCC--cccCCHHHHH----HHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--hHHHHHHH
Confidence 875311 1112222111 122334578999999999752 1112111 223899999999742 33445554
Q ss_pred -ccccceEEEeecCCCCCCHHHHHHHHhhhcccc---cCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHH
Q 000099 1147 -RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEV---FDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222 (2240)
Q Consensus 1147 -~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~i---F~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhk 1222 (2240)
.+....+|+|||||+...-.+-+..+....-.+ +.-.+...+-+..|+.......
T Consensus 388 ~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~--------------------- 446 (667)
T TIGR00348 388 KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLP--------------------- 446 (667)
T ss_pred hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecch---------------------
Confidence 567788999999998642111111111110000 0111112222222221110000
Q ss_pred HhhHHHHHhhhhhhccCCCCceEEEEEeccCHHH-HHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQ-SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1223 lLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Q-r~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
+. . ++... ...++.........+... ....+......+
T Consensus 447 ------------~~--~------------~~~~~l~~~~~~~~~~~~~~~~~~---------------~~~~l~~~~~~~ 485 (667)
T TIGR00348 447 ------------ED--H------------LDRKKLDAFFDEIFELLPERIREI---------------TKESLKEKLQKT 485 (667)
T ss_pred ------------hh--c------------cChHHHHHHHHHHHHhhhccccHH---------------HHHHHHHHHHHH
Confidence 00 0 00000 000110000000000000 000011111111
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHH-HHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-----CceEEeec
Q 000099 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLW-ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-----QLVYRRID 1375 (2240)
Q Consensus 1302 RKICNHP~L~~p~~~~ls~d~LirsSGKLe-lLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-----Giky~rLD 1375 (2240)
..+..++.. +.. ... ++..........+.|.+|||..+..+..+.+.|... +...+.++
T Consensus 486 ~~~~~~~~~-------------~~~--ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s 550 (667)
T TIGR00348 486 KKILFNEDR-------------LES--IAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMT 550 (667)
T ss_pred HhhhcChHH-------------HHH--HHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEec
Confidence 111111100 000 000 011111111123579999999999998888777544 34566777
Q ss_pred CCCCHH---------------------HHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHH
Q 000099 1376 GTTSLE---------------------DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQA 1434 (2240)
Q Consensus 1376 GsTs~e---------------------EReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QA 1434 (2240)
|+...+ ....++++|.++ .++. |||.++...+|+|.+.++++++.-+--+ +.++|+
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~-ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQa 627 (667)
T TIGR00348 551 GKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPK-LLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQA 627 (667)
T ss_pred CCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCce-EEEEEcccccccCCCccceEEEeccccc-cHHHHH
Confidence 765433 224789999863 3444 5677799999999999999999888775 458999
Q ss_pred hhhhhcc-CC-cceEEEEEEehhHHHh
Q 000099 1435 VARAHRI-GQ-KREVKVIYMEAVVDKI 1459 (2240)
Q Consensus 1435 iGRAhRI-GQ-KKeV~VyrLvTVEEkI 1459 (2240)
+||+.|+ +- |....|+.++.+.+.+
T Consensus 628 i~R~nR~~~~~K~~g~IvDy~g~~~~l 654 (667)
T TIGR00348 628 IARTNRIDGKDKTFGLIVDYRGLEKSL 654 (667)
T ss_pred HHHhccccCCCCCCEEEEECcChHHHH
Confidence 9999995 43 4457888887654443
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-17 Score=223.10 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=85.4
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcC---------------------------------ceEEeecCCCCHHHHHHHHHH
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ---------------------------------LVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rG---------------------------------iky~rLDGsTs~eEReeaIk~ 1389 (2240)
.+.++||||+.+..++.|...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999999998887531 124568899999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhcc
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRI 1441 (2240)
|+++..+ +||+|+++++|||+..+|+||+|++|.+...|+||+||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9976654 799999999999999999999999999999999999999985
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.9e-18 Score=202.02 Aligned_cols=315 Identities=22% Similarity=0.281 Sum_probs=211.6
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HH---HHhCCCCCe-EEEechH-HHHHHHHHHHHHCC
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LM---EFKGNYGPH-LIIVPNA-VLVNWKSELHKWLP 1074 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Ll---e~kg~~GP~-LIVVP~S-LL~QW~~Ef~Kw~P 1074 (2240)
..|.|-.+|.-.++ +...|--.-+|+|||..++..+.. .+ +.+...||+ |||||+. +..|...|.++|+.
T Consensus 246 ptpiq~qalptals----grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K 321 (731)
T KOG0339|consen 246 PTPIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGK 321 (731)
T ss_pred CCcccccccccccc----cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhh
Confidence 34455566655554 444454556999999887765433 33 234456776 5667976 66788899999964
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHHHHhhcc
Q 000099 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY 1148 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~L 1148 (2240)
++++++.+|+.....++. +. .....+||+|++.|+... ....-.+..||||||+.+|..- .........++
T Consensus 322 ~ygl~~v~~ygGgsk~eQ~k--~L-k~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi 398 (731)
T KOG0339|consen 322 AYGLRVVAVYGGGSKWEQSK--EL-KEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI 398 (731)
T ss_pred hccceEEEeecCCcHHHHHH--hh-hcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhc
Confidence 567777666654444332 22 367899999999998653 2333446789999999999653 33444444566
Q ss_pred ccce-EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1149 RCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1149 ks~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
+.++ .|++++|= .. ++.++.
T Consensus 399 rpdrQtllFsaTf--------------------------~~------------------------------kIe~la--- 419 (731)
T KOG0339|consen 399 RPDRQTLLFSATF--------------------------KK------------------------------KIEKLA--- 419 (731)
T ss_pred CCcceEEEeeccc--------------------------hH------------------------------HHHHHH---
Confidence 6655 68888871 10 011111
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
.+++. +.+. +|....-.. +.-|.+.-.+|-
T Consensus 420 ------rd~L~---dpVr-vVqg~vgea---------------------------------------n~dITQ~V~V~~- 449 (731)
T KOG0339|consen 420 ------RDILS---DPVR-VVQGEVGEA---------------------------------------NEDITQTVSVCP- 449 (731)
T ss_pred ------HHHhc---CCee-EEEeehhcc---------------------------------------ccchhheeeecc-
Confidence 11111 1111 111110000 000111111111
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
....|+.+|.+-|.+... ..+||||..-....+.|...|+..+|.+..+||++.+.+|.+.|
T Consensus 450 -----------------s~~~Kl~wl~~~L~~f~S-~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~l 511 (731)
T KOG0339|consen 450 -----------------SEEKKLNWLLRHLVEFSS-EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVL 511 (731)
T ss_pred -----------------CcHHHHHHHHHHhhhhcc-CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHH
Confidence 112477777777776543 34899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.+|+..... +|+.|+++.+||++....|||+||.--+-..+.|||||++|.|.+.. .|.|+|
T Consensus 512 s~fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGv--ayTlvT 573 (731)
T KOG0339|consen 512 SKFKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGV--AYTLVT 573 (731)
T ss_pred HHHhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccce--eeEEec
Confidence 999986666 79999999999999999999999999999999999999999998843 345544
|
|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-19 Score=185.05 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
+.+++.|.+||+.|.. +..+..|+.++...++||||++ |++||||.||.+||.++.|.++++|..||.|||.|
T Consensus 4 ~~w~~~c~~il~~l~~------~~~s~~F~~PVd~~~~pdY~~i-Ik~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~N 76 (119)
T cd05496 4 SDWKKQCKELVNLMWD------CEDSEPFRQPVDLLKYPDYRDI-IDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSN 76 (119)
T ss_pred HHHHHHHHHHHHHHHh------CCccccccCCCChhhcCcHHHH-hCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999974 4578999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCC-CcHHHHHHHHHHHHHHHHHHHhCCCChhHHh
Q 000099 2017 AMQFYGF-SHEVRSEARKVHDLFFDLLKIAFPDTDFREA 2054 (2240)
Q Consensus 2017 a~~yn~~-~sev~~dA~~L~~~F~~~~k~~fP~~~f~~a 2054 (2240)
|+.||++ +|.||.+|..|+++|..+++...+ +|.+|
T Consensus 77 a~~yN~~~~s~i~~~a~~L~~~F~~~~~~l~~--~~~~~ 113 (119)
T cd05496 77 SKSYTPNKRSRIYSMTLRLSALFEEHIKKIIS--DWKSA 113 (119)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 9999985 999999999999999999999866 55544
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-19 Score=179.28 Aligned_cols=95 Identities=21% Similarity=0.341 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000099 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2020 (2240)
Q Consensus 1941 ~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~y 2020 (2240)
++|.+||++|.. +..+.+|+.++.+.++||||++ |++||||.+|+.||++++|.++++|..||+|||+||+.|
T Consensus 3 ~~c~~il~~l~~------~~~s~~F~~pv~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 75 (97)
T cd05505 3 QKCEEILSKILK------YRFSWPFREPVTADEAEDYKKV-ITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKY 75 (97)
T ss_pred HHHHHHHHHHHh------CCCcccccCCCChhhcccHHHH-cCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999974 3467899999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHH
Q 000099 2021 YGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2021 n~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
|+++|.||.+|.+|+++|.+++
T Consensus 76 N~~~s~i~~~a~~le~~f~~~~ 97 (97)
T cd05505 76 YENGSYVLSCMRKTEQCCVNLL 97 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-19 Score=202.80 Aligned_cols=315 Identities=20% Similarity=0.232 Sum_probs=218.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH----HHHHHHHHHHHCCCC
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV----LVNWKSELHKWLPSV 1076 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL----L~QW~~Ef~Kw~Psl 1076 (2240)
.-|.|.+.+.-++. +.+.+.-.-.|+|||...+..++..+..+...-..+|+||+.. .+|-+.++.+++. +
T Consensus 108 PSPiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~-i 182 (459)
T KOG0326|consen 108 PSPIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLG-I 182 (459)
T ss_pred CCCccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccC-e
Confidence 34567777766654 3333444678999998877776666655555557899999764 3567888888875 8
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCchh--HHHHHhhcc-ccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLDRY-RCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~S--KlskaLk~L-ks~ 1151 (2240)
++.+..|+...|..+.. .....+++|.|++.+..... .-.-.+..++|+|||+.+....- .+.+.+.-+ +.+
T Consensus 183 ~vmvttGGT~lrDDI~R---l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r 259 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDIMR---LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER 259 (459)
T ss_pred EEEEecCCcccccceee---ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccc
Confidence 88888888877765432 24567999999999976532 22223678999999999976433 344444445 345
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
..|+.|||= . -..+.|.. |.
T Consensus 260 QillySATF-P------------------~tVk~Fm~-----------------------------------------~~ 279 (459)
T KOG0326|consen 260 QILLYSATF-P------------------LTVKGFMD-----------------------------------------RH 279 (459)
T ss_pred eeeEEeccc-c------------------hhHHHHHH-----------------------------------------Hh
Confidence 578888881 0 01223322 22
Q ss_pred hhhhhccCCCCceEEEEEeccCHH-HHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAI-QSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~-Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
+++-.+ +.+.-+|+.. -..+|.
T Consensus 280 l~kPy~--------INLM~eLtl~GvtQyYa------------------------------------------------- 302 (459)
T KOG0326|consen 280 LKKPYE--------INLMEELTLKGVTQYYA------------------------------------------------- 302 (459)
T ss_pred ccCcce--------eehhhhhhhcchhhhee-------------------------------------------------
Confidence 221110 0000000000 000010
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
.+..+-|+.+|..++.+|.- ...||||+.+...++|+..+...||.+..+|..|.++.|..++.+|
T Consensus 303 ------------fV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdF 368 (459)
T KOG0326|consen 303 ------------FVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDF 368 (459)
T ss_pred ------------eechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhh
Confidence 12335577778888777653 3689999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHh
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKI 1459 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI 1459 (2240)
+.+... .|++|+..-+|||+|++++||+||.|-|+..|++|+||.+|.|.-.- -+.|++.+++.
T Consensus 369 r~G~cr---nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGl--AInLityedrf 432 (459)
T KOG0326|consen 369 RNGKCR---NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGL--AINLITYEDRF 432 (459)
T ss_pred hccccc---eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcce--EEEEEehhhhh
Confidence 975544 68899999999999999999999999999999999999999996543 34566655554
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-17 Score=221.54 Aligned_cols=295 Identities=16% Similarity=0.203 Sum_probs=189.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps- 1075 (2240)
|.+++++|..++..++. +.+.++..+||+|||..++.++.++. .....+|||||+. |+.||...|.+++..
T Consensus 78 G~~pt~iQ~~~i~~il~----g~dv~i~ApTGsGKT~f~l~~~~~l~---~~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLL----GESFAIIAPTGVGKTTFGLVMSLYLA---KKGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred CCCCcHHHHHHHHHHHC----CCcEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 55899999998887775 77889999999999965444333332 2346799999987 678899999998753
Q ss_pred -CeEEEEecch----hhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCch------------
Q 000099 1076 -VSCIYYVGAK----DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE------------ 1138 (2240)
Q Consensus 1076 -lkVvvy~Gsk----deRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~------------ 1138 (2240)
+.+.+..|.. ..+.... ..+....++|+|+|++.+.++...+...++++|||||||+|....
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~-~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF 229 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFL-ERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGF 229 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHH-HHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCC
Confidence 3443333322 2222222 123446799999999999988777777779999999999986311
Q ss_pred --hHHHHHhhccc-------------------------cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhc
Q 000099 1139 --SVLARDLDRYR-------------------------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS 1191 (2240)
Q Consensus 1139 --SKlskaLk~Lk-------------------------s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~ 1191 (2240)
..+..++..++ ....+++|||.-.......
T Consensus 230 ~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~----------------------- 286 (1176)
T PRK09401 230 SEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK----------------------- 286 (1176)
T ss_pred CHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH-----------------------
Confidence 11111221111 1224445555321110000
Q ss_pred CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCccc
Q 000099 1192 QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRV 1271 (2240)
Q Consensus 1192 kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~l 1271 (2240)
+++ ++.. +.+
T Consensus 287 ------------------------------------l~~----~ll~---------~~v--------------------- 296 (1176)
T PRK09401 287 ------------------------------------LFR----ELLG---------FEV--------------------- 296 (1176)
T ss_pred ------------------------------------Hhh----ccce---------EEe---------------------
Confidence 000 0000 000
Q ss_pred CchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEe
Q 000099 1272 DPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFS 1351 (2240)
Q Consensus 1272 d~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFS 1351 (2240)
... . ..++.+. |-+ +....|...|..++..+ +..+||||
T Consensus 297 ~~~--------~---------------~~~rnI~-~~y--------------i~~~~k~~~L~~ll~~l---~~~~LIFv 335 (1176)
T PRK09401 297 GSP--------V---------------FYLRNIV-DSY--------------IVDEDSVEKLVELVKRL---GDGGLIFV 335 (1176)
T ss_pred cCc--------c---------------cccCCce-EEE--------------EEcccHHHHHHHHHHhc---CCCEEEEE
Confidence 000 0 0000000 000 00013555666666543 46899999
Q ss_pred cchhH---HHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe----cccccccCCCCC-CCeEEEcC
Q 000099 1352 TMTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYD 1423 (2240)
Q Consensus 1352 Q~t~~---LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS----TrAGGeGLNLQa-ADtVIifD 1423 (2240)
+.... ++.|.++|...|+++..+||++ .+.+++|.+++.+ +||+ |+++++|||++. +.+|||||
T Consensus 336 ~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~ 407 (1176)
T PRK09401 336 PSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYG 407 (1176)
T ss_pred ecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeC
Confidence 98776 9999999999999999999999 2346999976554 4555 799999999999 89999999
Q ss_pred CCC------ChhhHHHHhhhhhccC
Q 000099 1424 PDP------NPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1424 ~pW------NP~~d~QAiGRAhRIG 1442 (2240)
.|- ....+.+++||+..+-
T Consensus 408 vP~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 408 VPKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CCCEEEeccccccCHHHHHHHHhhc
Confidence 998 7788999999998554
|
|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-18 Score=180.92 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=97.7
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2012 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqL 2012 (2240)
.+|...+. +|..||.+|... ..+..|+.++++.++||||++ |++||||.+|++||+.++|.++.+|..||.|
T Consensus 8 ~~~~~~~~-~c~~il~~l~~~------~~s~~F~~pvd~~~~pdY~~v-I~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~L 79 (115)
T cd05504 8 HHGPLNLS-ALEQLLVEIVKH------KDSWPFLRPVSKIEVPDYYDI-IKKPMDLGTIKEKLNMGEYKLAEEFLSDIQL 79 (115)
T ss_pred CCCHHHHH-HHHHHHHHHHhC------CCchhhcCCCCccccccHHHH-hcCcccHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 46667666 899999999743 468899999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2013 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2013 Mf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||.||+.||+++|.+|.+|..|+++|.++++..
T Consensus 80 I~~Na~~yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 80 VFSNCFLYNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999864
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=197.41 Aligned_cols=311 Identities=19% Similarity=0.262 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH-----HHHHHhC-CCCCeEEEechHHH-HHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA-----YLMEFKG-NYGPHLIIVPNAVL-VNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa-----~Lle~kg-~~GP~LIVVP~SLL-~QW~~Ef~Kw 1072 (2240)
+..|.|-.+-.-++ .+...|-...||+|||+..+..-. ....... ....+||+.|+.-| .+-.-|..++
T Consensus 242 KPtPIqSQaWPI~L----QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQAWPILL----QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcccceee----cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 34455555533333 367778889999999988765211 1111112 22357888998754 5566677665
Q ss_pred -CCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCC--chhHHHHHhhc
Q 000099 1073 -LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD--RESVLARDLDR 1147 (2240)
Q Consensus 1073 -~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN--~~SKlskaLk~ 1147 (2240)
+.+++.++++|......++ +.....++++|+|+..|.+. ...+.-....|||||||++|.. ..-.+.+.|..
T Consensus 318 syng~ksvc~ygggnR~eqi---e~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilld 394 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQI---EDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLD 394 (629)
T ss_pred hhcCcceEEEecCCCchhHH---HHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhh
Confidence 4555555555544333232 33467889999999998754 2334444678999999999976 45678888888
Q ss_pred cccceEEEee-cCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1148 YRCQRRLLLT-GTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1148 Lks~~RLLLT-GTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
++.++..+|| || ...
T Consensus 395 iRPDRqtvmTSAT-WP~--------------------------------------------------------------- 410 (629)
T KOG0336|consen 395 IRPDRQTVMTSAT-WPE--------------------------------------------------------------- 410 (629)
T ss_pred cCCcceeeeeccc-Cch---------------------------------------------------------------
Confidence 8887755554 44 100
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
-+||+.....+ ...++++- .+.+. .|+
T Consensus 411 -~VrrLa~sY~K-----ep~~v~vG----------------sLdL~-------------------------------a~~ 437 (629)
T KOG0336|consen 411 -GVRRLAQSYLK-----EPMIVYVG----------------SLDLV-------------------------------AVK 437 (629)
T ss_pred -HHHHHHHHhhh-----CceEEEec----------------cccee-------------------------------eee
Confidence 11111111111 00111110 00000 000
Q ss_pred CCCCCCCCccccchh-hHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHH
Q 000099 1307 HPLLNYPYFSDLSKD-FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d-~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERee 1385 (2240)
. .... ++...+.|++.+..++.. ...+.||||||....++|-|..-|...||....|||.-.+.+|+.
T Consensus 438 s----------VkQ~i~v~~d~~k~~~~~~f~~~-ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~ 506 (629)
T KOG0336|consen 438 S----------VKQNIIVTTDSEKLEIVQFFVAN-MSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREM 506 (629)
T ss_pred e----------eeeeEEecccHHHHHHHHHHHHh-cCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHH
Confidence 0 0000 011123355444444433 456789999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEE
Q 000099 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1386 aIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
+++.|+++.-. ||++|+.+++|||++++.+|++||.|-|-..|+||+||++|.|.+....
T Consensus 507 al~~~ksG~vr---ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~si 566 (629)
T KOG0336|consen 507 ALEDFKSGEVR---ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSI 566 (629)
T ss_pred HHHhhhcCceE---EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceE
Confidence 99999986544 7999999999999999999999999999999999999999999887643
|
|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-18 Score=176.52 Aligned_cols=107 Identities=17% Similarity=0.182 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
..+|+...+|+..|..+.|++||.+++.|+++|++. |+||.+ |++||||.+|..||++++|.++++|..||.|||.|
T Consensus 2 ~~vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~~~--~~~~~~-ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~N 78 (110)
T cd05526 2 LLVQELLATLFVSVMNHQDEEGRCYSDSLAELPELA--VDGVGP-KKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLER 78 (110)
T ss_pred hHHHHHHHHHHHHHHhccCCCCCCchHHHHHCCCcc--cCchhh-hcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHH
Confidence 356778889999999999999999999999999965 777888 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
|+.||.++|++|+||..|+++|..+....+
T Consensus 79 Ar~yN~~~S~iy~dA~eLq~~f~~~rd~~~ 108 (110)
T cd05526 79 ARRLSRTDSEIYEDAVELQQFFIKIRDELC 108 (110)
T ss_pred HHHhCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998776654
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-16 Score=199.86 Aligned_cols=307 Identities=18% Similarity=0.283 Sum_probs=207.9
Q ss_pred CCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCC--
Q 000099 1000 TLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLP-- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw~P-- 1074 (2240)
+|...|..++.-+..=... ..+-+|-.++|+|||++|+..+...++ ....+.+.+|+.+| .|....|.+|++
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---~G~Q~ALMAPTEILA~QH~~~~~~~l~~~ 338 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---AGYQAALMAPTEILAEQHYESLRKWLEPL 338 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---cCCeeEEeccHHHHHHHHHHHHHHHhhhc
Confidence 6778999999887753332 334588999999999998777766665 23467999999865 778999999997
Q ss_pred CCeEEEEecchh--hHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhh-ccc-c
Q 000099 1075 SVSCIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYR-C 1150 (2240)
Q Consensus 1075 slkVvvy~Gskd--eRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk-~Lk-s 1150 (2240)
++.+....|.-. .|+.+. ..+..+..+|||.|+..|..... ..+..+|||||-||+.- .....|. .-. .
T Consensus 339 ~i~V~lLtG~~kgk~r~~~l-~~l~~G~~~ivVGTHALiQd~V~---F~~LgLVIiDEQHRFGV---~QR~~L~~KG~~~ 411 (677)
T COG1200 339 GIRVALLTGSLKGKARKEIL-EQLASGEIDIVVGTHALIQDKVE---FHNLGLVIIDEQHRFGV---HQRLALREKGEQN 411 (677)
T ss_pred CCeEEEeecccchhHHHHHH-HHHhCCCCCEEEEcchhhhccee---ecceeEEEEeccccccH---HHHHHHHHhCCCC
Confidence 578888888643 333333 35677889999999998865433 34678999999999853 2222233 223 6
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
++.|.||||||..++.= ..|++.+
T Consensus 412 Ph~LvMTATPIPRTLAl----------t~fgDld---------------------------------------------- 435 (677)
T COG1200 412 PHVLVMTATPIPRTLAL----------TAFGDLD---------------------------------------------- 435 (677)
T ss_pred CcEEEEeCCCchHHHHH----------HHhcccc----------------------------------------------
Confidence 89999999999887541 1111100
Q ss_pred hhhhhhccCCCCceEEEEEeccC-HHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMS-AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS-~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
-.+.++||+...-+...-+. ..-..+|+++
T Consensus 436 ---vS~IdElP~GRkpI~T~~i~~~~~~~v~e~i---------------------------------------------- 466 (677)
T COG1200 436 ---VSIIDELPPGRKPITTVVIPHERRPEVYERI---------------------------------------------- 466 (677)
T ss_pred ---chhhccCCCCCCceEEEEeccccHHHHHHHH----------------------------------------------
Confidence 01234577763222221111 1112222222
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchh--------HHHHHHHHHHh--cCceEEeecCCCC
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTK--------LLDILEEYLQW--RQLVYRRIDGTTS 1379 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~--------~LDiLed~L~~--rGiky~rLDGsTs 1379 (2240)
..++ ..|+.+.+.|.-.+ .+..+.+.|.. -++++..+||.|+
T Consensus 467 ---------------------------~~ei-~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~ 518 (677)
T COG1200 467 ---------------------------REEI-AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMK 518 (677)
T ss_pred ---------------------------HHHH-HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCC
Confidence 1111 13444444443221 12233333432 2567889999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC-CChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1380 ~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p-WNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
.+++.+++.+|++++.+ ||+||.+..+|||+++|+.+||+|.. +--++..|-.||++|-+...-|..++-
T Consensus 519 ~~eKd~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~ 589 (677)
T COG1200 519 PAEKDAVMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYK 589 (677)
T ss_pred hHHHHHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeC
Confidence 99999999999987777 89999999999999999999999998 689999999999999776666655443
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-16 Score=206.79 Aligned_cols=318 Identities=21% Similarity=0.181 Sum_probs=216.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CC---CCeEEEechHHHHH-HHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NY---GPHLIIVPNAVLVN-WKSELHKW 1072 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--~~---GP~LIVVP~SLL~Q-W~~Ef~Kw 1072 (2240)
.+|+|.|..++..+.. +.|.++..+||+|||..|+..+...+-..+ .. -.+|.|.|..-|.+ -...+..|
T Consensus 21 ~~~t~~Q~~a~~~i~~----G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEIHS----GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHHhC----CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 3799999999987775 999999999999999999887665544342 11 24799999876554 55556666
Q ss_pred C--CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh------hhhccccCcceEecccccccCC--chhHHH
Q 000099 1073 L--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKD--RESVLA 1142 (2240)
Q Consensus 1073 ~--PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD------~s~L~kikWd~VIIDEAHrLKN--~~SKls 1142 (2240)
. -++.+-+-+|......+ +......+||+|||++++.-. +..|. +..+|||||.|.+.+ ..+.++
T Consensus 97 ~~~~G~~v~vRhGDT~~~er---~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiHel~~sKRG~~Ls 171 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEK---QKMLKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIHALAESKRGVQLA 171 (814)
T ss_pred HHHcCCccceecCCCChHHh---hhccCCCCcEEEeChhHHHHHhcCHHHHHHhc--CCcEEEeehhhhhhccccchhhh
Confidence 4 35667777775433222 134567889999999998543 23343 467899999999975 345666
Q ss_pred HHhhcc---c-cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000099 1143 RDLDRY---R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (2240)
Q Consensus 1143 kaLk~L---k-s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~ 1218 (2240)
-.|.++ . .-.|++||||= .++.++ -.||.+.-. +.
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV--~~~~~v---arfL~g~~~------------~~------------------------ 210 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATV--GPPEEV---AKFLVGFGD------------PC------------------------ 210 (814)
T ss_pred hhHHHHHhhCcccEEEeehhcc--CCHHHH---HHHhcCCCC------------ce------------------------
Confidence 655554 2 35699999993 233333 233322100 00
Q ss_pred HHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000099 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298 (2240)
Q Consensus 1219 RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nil 1298 (2240)
.-|......+.++.+.++-......
T Consensus 211 ---------------~Iv~~~~~k~~~i~v~~p~~~~~~~---------------------------------------- 235 (814)
T COG1201 211 ---------------EIVDVSAAKKLEIKVISPVEDLIYD---------------------------------------- 235 (814)
T ss_pred ---------------EEEEcccCCcceEEEEecCCccccc----------------------------------------
Confidence 0000011111111111110000000
Q ss_pred HHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcC-ceEEeecCC
Q 000099 1299 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ-LVYRRIDGT 1377 (2240)
Q Consensus 1299 mqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rG-iky~rLDGs 1377 (2240)
..-...+...+.++..+...+|||++.+.+.+.+...|+..+ ..+..-||+
T Consensus 236 ----------------------------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgS 287 (814)
T COG1201 236 ----------------------------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGS 287 (814)
T ss_pred ----------------------------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeeccc
Confidence 000112333444555566789999999999999999999887 888899999
Q ss_pred CCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhh-hccCCcceEEEEEE
Q 000099 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA-HRIGQKREVKVIYM 1452 (2240)
Q Consensus 1378 Ts~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRA-hRIGQKKeV~VyrL 1452 (2240)
.+.+.|..+-++|+.++-+ .++||....+|||+-.+|.||.|.+|-.-...+||+||+ ||+|....-.||-.
T Consensus 288 lSre~R~~vE~~lk~G~lr---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 288 LSRELRLEVEERLKEGELK---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred ccHHHHHHHHHHHhcCCce---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEec
Confidence 9999999999999987655 689999999999999999999999999999999999999 67787655544433
|
|
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-18 Score=175.25 Aligned_cols=102 Identities=24% Similarity=0.397 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
+++|+.++..|...++. |.++.+|+.+|++.++|+||++ |.+||||.+|++||++++|.++++|..||.|||.||+.
T Consensus 5 ~~~~~~~~~~i~~~~~~--~~~~~~F~~~~~~~~~p~Y~~~-i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 81 (107)
T smart00297 5 QKKLQSLLKAVLDKLDS--HRLSWPFLKPVDRKEAPDYYDI-IKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKT 81 (107)
T ss_pred HHHHHHHHHHHHHHHHh--CccchhhccCCChhhccCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 44455555554444433 6899999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
||+++|.+|.+|..|+++|.++|+.
T Consensus 82 ~n~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 82 YNGPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999986
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-17 Score=207.94 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=122.5
Q ss_pred HHHHHHHcCCCCCCCCCccccc----hhhH-hhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEE
Q 000099 1298 CMELRKTCNHPLLNYPYFSDLS----KDFL-VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR 1372 (2240)
Q Consensus 1298 lmqLRKICNHP~L~~p~~~~ls----~d~L-irsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~ 1372 (2240)
...|.++-+.+.+..|...... .+.+ .....|+..+...+.++...|..|||||......+.|...|...|+++.
T Consensus 354 ~~E~~~iY~l~vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~ 433 (745)
T TIGR00963 354 EEEFEKIYNLEVVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHN 433 (745)
T ss_pred HHHHHHHhCCCEEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeE
Confidence 3566777666655444332211 1111 2234578778777777788999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCC-------CCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1373 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS-------ADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1373 rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQa-------ADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
.|+|. ..+|+..|..|...... ++|+|+.+|+|+|+.. ..+||+++.|-|...|.|+.||++|.|...
T Consensus 434 ~Lna~--q~~rEa~ii~~ag~~g~---VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G 508 (745)
T TIGR00963 434 VLNAK--NHEREAEIIAQAGRKGA---VTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPG 508 (745)
T ss_pred EeeCC--hHHHHHHHHHhcCCCce---EEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCc
Confidence 99998 77999999999864444 8999999999999998 569999999999999999999999999887
Q ss_pred eEEEEEEehhHHHhh
Q 000099 1446 EVKVIYMEAVVDKIS 1460 (2240)
Q Consensus 1446 eV~VyrLvTVEEkI~ 1460 (2240)
.+..| ++.++.++
T Consensus 509 ~s~~~--ls~eD~l~ 521 (745)
T TIGR00963 509 SSRFF--LSLEDNLM 521 (745)
T ss_pred ceEEE--EeccHHHH
Confidence 76544 33444444
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.6e-18 Score=206.30 Aligned_cols=313 Identities=19% Similarity=0.262 Sum_probs=215.0
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCC---CC
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLP---SV 1076 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw~P---sl 1076 (2240)
..+.|..+|..... +..-|+-.-.|+|||++...++..-+......--.|||+|+..+ .|...-|.+.++ ++
T Consensus 48 ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 44678888877665 67779999999999988655544444334444567999999854 566777777776 57
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCCchh---HHHHHhhccc-c
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYR-C 1150 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN~~S---KlskaLk~Lk-s 1150 (2240)
+|.+|.|+.+.... ..+....+|+|.|++.|... ...|.--+.+++|+|||+.+....+ .+...+..+. .
T Consensus 124 ~csvfIGGT~~~~d----~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~ 199 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLD----LIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQI 199 (980)
T ss_pred ceEEEecCchhhhh----hhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchh
Confidence 89999887665432 23445678999999999754 3456666889999999999976443 4555566664 4
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh-HHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE-PFML 1229 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr-PFmL 1229 (2240)
+..+++|||=- .+|.+ +|.++++ |.++
T Consensus 200 rQv~a~SATYp-~nLdn---------------------------------------------------~Lsk~mrdp~lV 227 (980)
T KOG4284|consen 200 RQVAAFSATYP-RNLDN---------------------------------------------------LLSKFMRDPALV 227 (980)
T ss_pred heeeEEeccCc-hhHHH---------------------------------------------------HHHHHhccccee
Confidence 55888999931 12222 2222332 2222
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
|-...|+- -+.-+..++..|.... ....
T Consensus 228 r~n~~d~~-L~GikQyv~~~~s~nn------------------------------------------svee--------- 255 (980)
T KOG4284|consen 228 RFNADDVQ-LFGIKQYVVAKCSPNN------------------------------------------SVEE--------- 255 (980)
T ss_pred ecccCCce-eechhheeeeccCCcc------------------------------------------hHHH---------
Confidence 22122210 0111111111111000 0000
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHH
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~ 1389 (2240)
.--|+..|..++..+- -...||||....-++-|..+|...|+.+..|.|.|++.+|..+++.
T Consensus 256 ----------------mrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~ 317 (980)
T KOG4284|consen 256 ----------------MRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQ 317 (980)
T ss_pred ----------------HHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHH
Confidence 0114455555554432 2357999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcce
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKe 1446 (2240)
++.-.. -||+||+..++|||-..++.||++|+|-+-..|.||||||+|.|-..-
T Consensus 318 lr~f~~---rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~ 371 (980)
T KOG4284|consen 318 LRAFRV---RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGA 371 (980)
T ss_pred hhhceE---EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccce
Confidence 986332 379999999999999999999999999999999999999999996654
|
|
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-18 Score=176.20 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccc--cCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1941 ~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~--~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
++|..||++|.. ...+.++.+|+++++.. ++||||++ |++||||.+|+.||++++|.++.+|..||+|||.||+
T Consensus 3 ~~c~~Il~~l~~---~~~~~~s~~F~~pvd~~~~~~pdY~~~-I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~ 78 (102)
T cd05499 3 KFCEEVLKELMK---PKHSAYNWPFLDPVDPVALNIPNYFSI-IKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCY 78 (102)
T ss_pred HHHHHHHHHHHc---ccCCcccchhcCCCCccccCCCCHHHH-hcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 489999999954 45688999999996655 99999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
.||+++|.+|.+|..|+++|.++|
T Consensus 79 ~yn~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 79 TFNPEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999865
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-18 Score=173.26 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000099 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2020 (2240)
Q Consensus 1941 ~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~y 2020 (2240)
++|..|+.+|+.. ..+.+|...| ..+||||++ |++||||.||+.||+++.|.++++|+.||.|||+||+.|
T Consensus 5 ~~ce~il~~l~~~------~~s~~f~~~p--~~~pdY~~i-Ik~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~y 75 (102)
T cd05501 5 LKCEFLLLKVYCM------SKSGFFISKP--YYIRDYCQG-IKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLF 75 (102)
T ss_pred HHHHHHHHHHHhC------cccccccCCC--CCCCchHHH-cCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4799999999844 3456776655 489999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2021 YGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2021 n~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
|+++ .++..|..|++.|..+++.+|
T Consensus 76 N~~~-~~~~~a~~L~~~Fek~~~~~f 100 (102)
T cd05501 76 YKDD-DFGQVGITLEKKFEKNFKEVF 100 (102)
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 9999 999999999999999999987
|
The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-18 Score=174.11 Aligned_cols=99 Identities=22% Similarity=0.335 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na 2017 (2240)
+++|+.||++|.. .+|+.++.+|+++ |.+.++||||++ |.+||||.+|+.||+.++|.++.+|..||+|||.||
T Consensus 2 ~~~c~~il~~l~~---~~~~~~a~~F~~pv~~~~~~~p~Y~~~-I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na 77 (102)
T cd05498 2 LKFCSGILKELFS---KKHKAYAWPFYKPVDPEALGLHDYHDI-IKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNC 77 (102)
T ss_pred hhHHHHHHHHHHh---CCCccccCcccCcCCccccCCCcHHHH-ccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999964 4789999999997 455689999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHH
Q 000099 2018 MQFYGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2018 ~~yn~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
+.||+++|.++.+|..|+++|..+|
T Consensus 78 ~~yn~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 78 YKYNPPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-18 Score=174.70 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLM 2013 (2240)
++.+.++|..++.+|... +..+..|..+ |.+.++||||++ |++||||.+|..||++++|.++.+|..||.||
T Consensus 1 ~~~l~~~~~~il~~l~~~-----~~~s~~F~~PV~~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li 74 (108)
T cd05495 1 PEELRQALMPTLEKLYKQ-----DPESLPFRQPVDPKLLGIPDYFDI-VKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLM 74 (108)
T ss_pred CHHHHHHHHHHHHHHHHc-----CcccchhcCCCCccccCCCcHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 467889999999999733 2578899997 555689999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2014 f~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
|+||+.||+++|.||++|..|+++|...|+..
T Consensus 75 ~~Na~~yN~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 75 FDNAWLYNRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998764
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-17 Score=196.70 Aligned_cols=334 Identities=19% Similarity=0.236 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHH----------hCCCC--CeEEEechH-HHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEF----------KGNYG--PHLIIVPNA-VLVNW 1065 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~----------kg~~G--P~LIVVP~S-LL~QW 1065 (2240)
+..+.|...|.-++. .....|=|.|||+|||+.+.-.|.. +.+. ...+. -.|||+|+. |..|.
T Consensus 203 ~Pt~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV 279 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQV 279 (731)
T ss_pred CCccchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHH
Confidence 344566666655553 2255677899999999987655544 2211 11112 269999988 55666
Q ss_pred HHHHHHHC--CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----hhcccc-CcceEecccccccC--C
Q 000099 1066 KSELHKWL--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKV-DWKYIIIDEAQRMK--D 1136 (2240)
Q Consensus 1066 ~~Ef~Kw~--PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----s~L~ki-kWd~VIIDEAHrLK--N 1136 (2240)
+.-|...+ +.+++..+.|+-...++. .+.....+|||.|++.|+... -+|.++ +..++||||++||. .
T Consensus 280 ~~Hl~ai~~~t~i~v~si~GGLavqKQq---RlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekg 356 (731)
T KOG0347|consen 280 KQHLKAIAEKTQIRVASITGGLAVQKQQ---RLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKG 356 (731)
T ss_pred HHHHHHhccccCeEEEEeechhHHHHHH---HHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhc
Confidence 66666654 578888899887654432 334458899999999987532 123333 56899999999994 3
Q ss_pred chhHHHHHhhccc------cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000099 1137 RESVLARDLDRYR------CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (2240)
Q Consensus 1137 ~~SKlskaLk~Lk------s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~ 1210 (2240)
+-..+++.|..+. -...|++|||- .|..- .|.......... +
T Consensus 357 hF~Els~lL~~L~e~~~~~qrQTlVFSATl------------t~~~~--------------~~~~~~~k~~~k------~ 404 (731)
T KOG0347|consen 357 HFEELSKLLKHLNEEQKNRQRQTLVFSATL------------TLVLQ--------------QPLSSSRKKKDK------E 404 (731)
T ss_pred cHHHHHHHHHHhhhhhcccccceEEEEEEe------------ehhhc--------------ChhHHhhhccch------h
Confidence 4445555555553 12358888882 11100 010000000000 0
Q ss_pred HHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHH
Q 000099 1211 EKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKV 1290 (2240)
Q Consensus 1211 Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~ 1290 (2240)
......+..|.+.+ .-.-+++ + +++++.+..
T Consensus 405 ~~~~~kiq~Lmk~i------------g~~~kpk---i--iD~t~q~~t-------------------------------- 435 (731)
T KOG0347|consen 405 DELNAKIQHLMKKI------------GFRGKPK---I--IDLTPQSAT-------------------------------- 435 (731)
T ss_pred hhhhHHHHHHHHHh------------CccCCCe---e--EecCcchhH--------------------------------
Confidence 00001112221111 1111111 1 122221111
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCce
Q 000099 1291 YKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV 1370 (2240)
Q Consensus 1291 ~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGik 1370 (2240)
...+..-+-.| |.+.-..+-. -++ ..-..|.||||+..+.+..|.-+|...++.
T Consensus 436 ----a~~l~Es~I~C--~~~eKD~yly---Yfl-----------------~ryPGrTlVF~NsId~vKRLt~~L~~L~i~ 489 (731)
T KOG0347|consen 436 ----ASTLTESLIEC--PPLEKDLYLY---YFL-----------------TRYPGRTLVFCNSIDCVKRLTVLLNNLDIP 489 (731)
T ss_pred ----HHHHHHHhhcC--CccccceeEE---EEE-----------------eecCCceEEEechHHHHHHHHHHHhhcCCC
Confidence 11122222234 2221111000 011 112458999999999999999999999999
Q ss_pred EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1371 y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
.+.||..|.+++|.+.+++|.... ..+||+|+++++|||++.+++||+|-.|-+...|+||-||+.|.+.. -|.|.
T Consensus 490 p~~LHA~M~QKqRLknLEkF~~~~---~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~-Gvsvm 565 (731)
T KOG0347|consen 490 PLPLHASMIQKQRLKNLEKFKQSP---SGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSE-GVSVM 565 (731)
T ss_pred CchhhHHHHHHHHHHhHHHHhcCC---CeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCC-CeEEE
Confidence 999999999999999999998633 34899999999999999999999999999999999999999999854 34444
|
|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-18 Score=175.10 Aligned_cols=106 Identities=18% Similarity=0.271 Sum_probs=96.5
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2015 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~ 2015 (2240)
++.+...|.+|++.|.... ..+.+|+.++.+.++||||++ |++||||.+|..||++++|.++++|..||.|||.
T Consensus 5 ~~~~~~~~~~il~~l~~~~-----~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~ 78 (112)
T cd05510 5 QEEFYESLDKVLNELKTYT-----EHSTPFLTKVSKREAPDYYDI-IKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWK 78 (112)
T ss_pred HHHHHHHHHHHHHHHHhcC-----ccccchhcCCChhhcCCHHHH-hcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 4678889999999997553 458999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCc-HHHHHHHHHHHHHHHHHHHhCCC
Q 000099 2016 GAMQFYGFSH-EVRSEARKVHDLFFDLLKIAFPD 2048 (2240)
Q Consensus 2016 Na~~yn~~~s-ev~~dA~~L~~~F~~~~k~~fP~ 2048 (2240)
||+.||+++| .++.+|..|+++|.+.|+.. ||
T Consensus 79 N~~~yN~~~s~~~~~~A~~l~~~~~~~~~~~-~~ 111 (112)
T cd05510 79 NCLLYNSDPSHPLRRHANFMKKKAEHLLKLI-PD 111 (112)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC-CC
Confidence 9999999765 67899999999999988754 65
|
SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-18 Score=171.96 Aligned_cols=95 Identities=15% Similarity=0.269 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000099 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2020 (2240)
Q Consensus 1941 ~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~y 2020 (2240)
.+|..|+..|.. |..+..|+.+++..++|+||.+ |++||||.+|++||++++|.++.+|..||.|||.||+.|
T Consensus 3 ~~c~~il~~l~~------~~~~~~F~~pv~~~~~p~Y~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 75 (97)
T cd05503 3 ALCETILDEMEA------HEDAWPFLEPVNTKLVPGYRKI-IKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETF 75 (97)
T ss_pred HHHHHHHHHHHc------CCCchhhcCCCCccccCCHHHH-hCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 379999999973 5788999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHH
Q 000099 2021 YGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2021 n~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
|+++|.+|.+|..|+++|..+|
T Consensus 76 N~~~s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 76 NEDDSEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998864
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.5e-16 Score=200.52 Aligned_cols=324 Identities=16% Similarity=0.201 Sum_probs=193.8
Q ss_pred CCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH---------HHH---HhCCCCCeEEEech
Q 000099 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY---------LME---FKGNYGPHLIIVPN 1059 (2240)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~---------Lle---~kg~~GP~LIVVP~ 1059 (2240)
-|..|....|++.|.+.=+.++..+..+...|+..+||+|||.++=-++.+ .++ .....+++||++|.
T Consensus 152 n~~~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Pr 231 (675)
T PHA02653 152 NPEPFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPR 231 (675)
T ss_pred CCCccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcH
Confidence 344455567888888877777777777999999999999999875322221 111 02234689999998
Q ss_pred H-HHHHHHHHHHHHC-----CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccc
Q 000099 1060 A-VLVNWKSELHKWL-----PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQR 1133 (2240)
Q Consensus 1060 S-LL~QW~~Ef~Kw~-----PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHr 1133 (2240)
. ++.+...++.+.. .+..+.+..|+.... .. .......+++|+|..... . .-.++++|||||||.
T Consensus 232 reLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~--~t~~k~~~Ilv~T~~L~l---~--~L~~v~~VVIDEaHE 302 (675)
T PHA02653 232 VALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDE--LI--NTNPKPYGLVFSTHKLTL---N--KLFDYGTVIIDEVHE 302 (675)
T ss_pred HHHHHHHHHHHHHHhCccccCCceEEEEECCcchH--Hh--hcccCCCCEEEEeCcccc---c--ccccCCEEEcccccc
Confidence 7 4566677776532 345555666655421 10 111225689999854211 1 123688999999999
Q ss_pred cCCchhHHHHHhhccc--cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHH
Q 000099 1134 MKDRESVLARDLDRYR--CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1211 (2240)
Q Consensus 1134 LKN~~SKlskaLk~Lk--s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~E 1211 (2240)
+......+...++.+. ....+++|||.- .+... |..+|..|..-.
T Consensus 303 r~~~~DllL~llk~~~~~~rq~ILmSATl~-~dv~~------------------l~~~~~~p~~I~-------------- 349 (675)
T PHA02653 303 HDQIGDIIIAVARKHIDKIRSLFLMTATLE-DDRDR------------------IKEFFPNPAFVH-------------- 349 (675)
T ss_pred CccchhHHHHHHHHhhhhcCEEEEEccCCc-HhHHH------------------HHHHhcCCcEEE--------------
Confidence 8655444444443332 236899999962 11222 222221111000
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhhhcc-CCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHH
Q 000099 1212 KKVIIIHRLHQILEPFMLRRRVEDVEG-SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKV 1290 (2240)
Q Consensus 1212 e~~lii~RLhklLrPFmLRRlKkDVek-dLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~ 1290 (2240)
+.. .+.+.....+.....+.+...|- .
T Consensus 350 ------------------------I~grt~~pV~~~yi~~~~~~~~~~~y~--~-------------------------- 377 (675)
T PHA02653 350 ------------------------IPGGTLFPISEVYVKNKYNPKNKRAYI--E-------------------------- 377 (675)
T ss_pred ------------------------eCCCcCCCeEEEEeecCcccccchhhh--H--------------------------
Confidence 000 01111111111110000000000 0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH-hcCCeEEEEecchhHHHHHHHHHHhc--
Q 000099 1291 YKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWR-- 1367 (2240)
Q Consensus 1291 ~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~-atGhKVLIFSQ~t~~LDiLed~L~~r-- 1367 (2240)
..|..++ .++..+. ..+..+|||+.....++.+.+.|...
T Consensus 378 ------------------------------------~~k~~~l-~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~ 420 (675)
T PHA02653 378 ------------------------------------EEKKNIV-TALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP 420 (675)
T ss_pred ------------------------------------HHHHHHH-HHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC
Confidence 0011111 1111111 23568999999999999999999887
Q ss_pred CceEEeecCCCCHHHHHHHHHHHh-cCCCCccEEEEecccccccCCCCCCCeEEEcC---CC---------CChhhHHHH
Q 000099 1368 QLVYRRIDGTTSLEDRESAIVDFN-SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYD---PD---------PNPKNEEQA 1434 (2240)
Q Consensus 1368 Giky~rLDGsTs~eEReeaIk~FN-s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD---~p---------WNP~~d~QA 1434 (2240)
++.+..|||+++.. ++.+++|. ++. +-+|++|+++++|||++++++||.++ .+ .+...+.||
T Consensus 421 ~~~v~~LHG~Lsq~--eq~l~~ff~~gk---~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QR 495 (675)
T PHA02653 421 IYDFYIIHGKVPNI--DEILEKVYSSKN---PSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQR 495 (675)
T ss_pred CceEEeccCCcCHH--HHHHHHHhccCc---eeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHh
Confidence 79999999999964 56778874 332 34799999999999999999999997 22 277789999
Q ss_pred hhhhhccCCcceEEEEEEeh
Q 000099 1435 VARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1435 iGRAhRIGQKKeV~VyrLvT 1454 (2240)
.||++|. + +-.+|+|.+
T Consensus 496 aGRAGR~-~--~G~c~rLyt 512 (675)
T PHA02653 496 KGRVGRV-S--PGTYVYFYD 512 (675)
T ss_pred ccCcCCC-C--CCeEEEEEC
Confidence 9999998 3 344555554
|
|
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.6e-18 Score=173.21 Aligned_cols=101 Identities=19% Similarity=0.220 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcc--cccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHH
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2014 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~--R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf 2014 (2240)
..++--++.||.+|. .|..+.+|..+.. +.++||||++ |++||||.+|+.||+.++|.++.+|..||.|||
T Consensus 4 ~q~~~~~~~il~~l~------~~~~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~ 76 (107)
T cd05497 4 NQLQYLLKVVLKALW------KHKFAWPFQQPVDAVKLNLPDYHKI-IKTPMDLGTIKKRLENNYYWSASECIQDFNTMF 76 (107)
T ss_pred HHHHHHHHHHHHHHH------hCCcCccccCCCCcccccCCcHHHH-HcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 345555678888886 4688999999955 5589999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2015 KGAMQFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2015 ~Na~~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
.||+.||+++|.||..|..|+++|.++|+.
T Consensus 77 ~Na~~yN~~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 77 TNCYIYNKPGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999975
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-17 Score=211.69 Aligned_cols=112 Identities=15% Similarity=0.296 Sum_probs=102.2
Q ss_pred cccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHH
Q 000099 1932 SAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSD 2009 (2240)
Q Consensus 1932 ~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~D 2009 (2240)
+.++...+-+.|..||.+|+.++.. |+|... |....+||||.| |++||||+||..||..++|.++.||++|
T Consensus 216 ~~~~~~~~lk~C~~iLk~l~~~k~a------wpF~~PVD~v~LgLpDY~~I-IK~PMDLgTIK~kL~~~~Y~~~~eF~~D 288 (640)
T KOG1474|consen 216 KSKLTVELLKQCLSILKRLMKHKHA------WPFNEPVDVVKLGLPDYHDI-IKHPMDLGTIKKKLEKGEYKSAEEFAAD 288 (640)
T ss_pred cccccHHHHHHHHHHHHHHHhccCC------CCcCCCcCHHhcCCcchhhh-cCCCccHHHHHhhhcccccCCHHHHHHH
Confidence 4455555666899999999977655 999999 888999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCCh
Q 000099 2010 VQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTD 2050 (2240)
Q Consensus 2010 vqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~~~ 2050 (2240)
|+|||+|||+||.++++||.-|..|.++|..+|+..++...
T Consensus 289 VRL~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~ 329 (640)
T KOG1474|consen 289 VRLTFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLEIE 329 (640)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999888443
|
|
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-17 Score=169.87 Aligned_cols=99 Identities=19% Similarity=0.313 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
++++|.+|+++|. .|..+..|+.++.+.++|+||++ |++||||.+|+.||++++|.++.+|..||.|||.||+
T Consensus 2 ~~~~~~~il~~l~------~~~~a~~F~~pv~~~~~p~Y~~~-I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~ 74 (101)
T cd05509 2 LYTQLKKVLDSLK------NHKSAWPFLEPVDKEEAPDYYDV-IKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCR 74 (101)
T ss_pred hHHHHHHHHHHHH------hCCCchhhcCCCChhhcCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4678999999996 34578999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
.||+++|.+|.+|..|+++|.++|+.
T Consensus 75 ~yN~~~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 75 LYNGPDTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999875
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-17 Score=170.70 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Q 000099 1938 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017 (2240)
Q Consensus 1938 ~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na 2017 (2240)
.+.+.|..++++|. .|..+.+|..++....+||||++ |++||||.+|++||++++|.++.||..||.|||.||
T Consensus 3 ~~~~~~~~il~~l~------~~~~a~~F~~pV~~~~~p~Y~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 75 (104)
T cd05507 3 AWKKAILLVYRTLA------SHRYASVFLKPVTEDIAPGYHSV-VYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNA 75 (104)
T ss_pred HHHHHHHHHHHHHH------cCCCCHhhcCCCCccccCCHHHH-hCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 46788999999996 47789999999998999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2018 MQFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2018 ~~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
+.||+++|.||.+|..|++.|.++|..
T Consensus 76 ~~yN~~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 76 IMYNSSDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998753
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-15 Score=185.17 Aligned_cols=85 Identities=22% Similarity=0.262 Sum_probs=72.2
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcC--ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ--LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1420 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rG--iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVI 1420 (2240)
.+.++||||+....++.|...|+..+ +.+..++|.++..+|.+.. .. .||++|+++++|||+.. ++||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~---~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QF---DILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cC---CEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999999865 5788999999999987653 22 38999999999999986 4666
Q ss_pred EcCCCCChhhHHHHhhhhh
Q 000099 1421 IYDPDPNPKNEEQAVARAH 1439 (2240)
Q Consensus 1421 ifD~pWNP~~d~QAiGRAh 1439 (2240)
++ +-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 56 678999999999985
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-16 Score=185.48 Aligned_cols=305 Identities=20% Similarity=0.214 Sum_probs=192.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH----HHHHHHHCCCCe
Q 000099 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW----KSELHKWLPSVS 1077 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW----~~Ef~Kw~Pslk 1077 (2240)
-..|..+|..|+.. -..|-|--...|+|||..+...++......-...-++-|+|+.-+... ..|+.+|+ .++
T Consensus 114 skIQe~aLPlll~~--Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~it 190 (477)
T KOG0332|consen 114 SKIQETALPLLLAE--PPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELT 190 (477)
T ss_pred chHHHhhcchhhcC--CchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-eee
Confidence 34566676666542 233446667899999977655544433322233445677998855443 34445555 343
Q ss_pred E-EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccc---cCcceEecccccccCCch--h-HHHHHhhccc-
Q 000099 1078 C-IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK---VDWKYIIIDEAQRMKDRE--S-VLARDLDRYR- 1149 (2240)
Q Consensus 1078 V-vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~k---ikWd~VIIDEAHrLKN~~--S-KlskaLk~Lk- 1149 (2240)
. +++.|++..|.. ...-+|+|.|++++.+....|.- .+...+|+|||+.|.+.. . .-.+....+.
T Consensus 191 a~yair~sk~~rG~-------~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~ 263 (477)
T KOG0332|consen 191 ASYAIRGSKAKRGN-------KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR 263 (477)
T ss_pred EEEEecCcccccCC-------cchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC
Confidence 3 334455333322 23458999999999876544333 367899999999997754 1 1222223333
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmL 1229 (2240)
....|+.|+|= -.....|...+
T Consensus 264 ~~QllLFSATf-------------------~e~V~~Fa~ki--------------------------------------- 285 (477)
T KOG0332|consen 264 NQQLLLFSATF-------------------VEKVAAFALKI--------------------------------------- 285 (477)
T ss_pred cceEEeeechh-------------------HHHHHHHHHHh---------------------------------------
Confidence 45678888881 00011121111
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
+|+.....++-+ .+. ...+.+|--.|.+
T Consensus 286 ----------vpn~n~i~Lk~e----------------el~------------------------L~~IkQlyv~C~~-- 313 (477)
T KOG0332|consen 286 ----------VPNANVIILKRE----------------ELA------------------------LDNIKQLYVLCAC-- 313 (477)
T ss_pred ----------cCCCceeeeehh----------------hcc------------------------ccchhhheeeccc--
Confidence 111111111100 000 0001122222221
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHH
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~ 1389 (2240)
...|+.+|..|.- +.. =...||||....++..|...|...|+.+..|||.+..++|..++++
T Consensus 314 ----------------~~~K~~~l~~lyg-~~t-igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~ 375 (477)
T KOG0332|consen 314 ----------------RDDKYQALVNLYG-LLT-IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDR 375 (477)
T ss_pred ----------------hhhHHHHHHHHHh-hhh-hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHH
Confidence 1235555555322 221 2357999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC------ChhhHHHHhhhhhccCCcceE
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW------NP~~d~QAiGRAhRIGQKKeV 1447 (2240)
|+.+..+ +|++|.+.++|||++.++.||+||+|- ++..|+||+||++|.|.+.-+
T Consensus 376 Fr~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a 436 (477)
T KOG0332|consen 376 FREGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLA 436 (477)
T ss_pred HhcCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceE
Confidence 9987776 899999999999999999999999984 688999999999999966544
|
|
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-17 Score=166.14 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=93.9
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2012 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqL 2012 (2240)
|++.+.++|.+++.+|. -+..+.+|..+ |.+..+||||++ |.+||||.+|+.||+.+.|.++.+|..||+|
T Consensus 1 ~t~~~~~~~~~ii~~l~------~~~~a~~F~~pv~~~~~~~p~Y~~~-I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~l 73 (103)
T cd05500 1 MTKHQHKFLLSSIRSLK------RLKDARPFLVPVDPVKLNIPHYPTI-IKKPMDLGTIERKLKSNVYTSVEEFTADFNL 73 (103)
T ss_pred CCHHHHHHHHHHHHHHH------cCCCChhhcCCCCcccccCCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 57888899999999997 45678999998 446789999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHH
Q 000099 2013 MLKGAMQFYGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2013 Mf~Na~~yn~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
||.||+.||+++|.++.+|..|++.|..+|
T Consensus 74 i~~Na~~yN~~~s~~~~~A~~l~~~fe~~~ 103 (103)
T cd05500 74 MVDNCLTFNGPEHPVSQMGKRLQAAFEKHL 103 (103)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998764
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-17 Score=171.72 Aligned_cols=105 Identities=20% Similarity=0.244 Sum_probs=96.8
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccc-cCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI-ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~-~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLM 2013 (2240)
+.+.++.+|-.++.+| ++..++.++..|..++.+. .+|+||++ |++||||.+|++||+++.|.+..+|..||+||
T Consensus 21 ~~~~~~~~i~~~l~~l---~~~~~~~~~~~F~~pv~~~~~~p~Y~~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 96 (128)
T cd05529 21 IRDEERERLISGLDKL---LLSLQLEIAEYFEYPVDLRAWYPDYWNR-VPVPMDLETIRSRLENRYYRSLEALRHDVRLI 96 (128)
T ss_pred CCHHHHHHHHHHHHHH---HhcccCcccccccCCCCccccCCcHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4466777777777666 4557999999999999999 99999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHH
Q 000099 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLK 2043 (2240)
Q Consensus 2014 f~Na~~yn~~~sev~~dA~~L~~~F~~~~k 2043 (2240)
|.||+.||+++|.++..|+.|+++|..+++
T Consensus 97 ~~Na~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 97 LSNAETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999886
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-15 Score=203.96 Aligned_cols=313 Identities=15% Similarity=0.223 Sum_probs=181.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps- 1075 (2240)
+..++++|..++..++. +.+.++..+||+|||..++.++.++.. ....+|||+|+. |+.|+..+|.+++..
T Consensus 76 g~~p~~iQ~~~i~~il~----G~d~vi~ApTGsGKT~f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~~l~~~~ 148 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLR----GDSFAIIAPTGVGKTTFGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEKISSLAEKA 148 (1171)
T ss_pred CCCCcHHHHHHHHHHhC----CCeEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHHHHHHhc
Confidence 34789999999987775 778899999999999855544444432 235799999987 668899999988753
Q ss_pred -Ce---EEEEecchhhHh--HHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccc
Q 000099 1076 -VS---CIYYVGAKDQRS--RLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR 1149 (2240)
Q Consensus 1076 -lk---Vvvy~GskdeRk--~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lk 1149 (2240)
+. +.+|+|...... ..+ ..+..+.++|||+|++.+.+....+.. ++++|||||||+|....-.+-+.|..
T Consensus 149 ~i~~~~i~~~~Gg~~~~e~~~~~-~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~il~l-- 224 (1171)
T TIGR01054 149 GVGTVNIGAYHSRLPTKEKKEFM-ERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLKASKNVDKLLKL-- 224 (1171)
T ss_pred CCceeeeeeecCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhhccccHHHHHHH--
Confidence 22 234666543322 211 123345699999999999887666654 89999999999996522111111110
Q ss_pred cceEEEeecCCCCC-CHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000099 1150 CQRRLLLTGTPLQN-DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (2240)
Q Consensus 1150 s~~RLLLTGTPLQN-nL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFm 1228 (2240)
.|- .. .+..+|.++.. +.. ...+ ..+..+..+++.
T Consensus 225 -------lGF--~~e~i~~il~~~~~---~~~-----------------------~~~~-------~~~~~~~~~~~~-- 260 (1171)
T TIGR01054 225 -------LGF--SEELIEKAWKLIRL---RLK-----------------------LYRA-------LHAKKRLELLEA-- 260 (1171)
T ss_pred -------cCC--CHHHHHHHHHHhhh---ccc-----------------------cchH-------HHHHHHHHHHHh--
Confidence 110 00 11122222211 000 0000 011222222211
Q ss_pred HHhhhhhhccCCCCceE-EEEEeccCH--HH--HHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000099 1229 LRRRVEDVEGSLPPKVS-IVLRCRMSA--IQ--SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1303 (2240)
Q Consensus 1229 LRRlKkDVekdLP~KvE-~vV~c~LS~--~Q--r~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRK 1303 (2240)
+|.+.. ..+.+..|. .. ..++..+. .+... .. ...++.
T Consensus 261 -----------~~~~~q~~li~~SAT~~p~~~~~~l~r~ll-----~~~v~-------~~--------------~~~~r~ 303 (1171)
T TIGR01054 261 -----------IPGKKRGCLIVSSATGRPRGKRAKLFRELL-----GFEVG-------GG--------------SDTLRN 303 (1171)
T ss_pred -----------hhhccCcEEEEEeCCCCccccHHHHccccc-----ceEec-------Cc--------------cccccc
Confidence 111111 122222221 00 01111000 00000 00 000111
Q ss_pred HcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecch---hHHHHHHHHHHhcCceEEeecCCCCH
Q 000099 1304 TCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT---KLLDILEEYLQWRQLVYRRIDGTTSL 1380 (2240)
Q Consensus 1304 ICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t---~~LDiLed~L~~rGiky~rLDGsTs~ 1380 (2240)
+. |.+ +....+...|..+|..+ +..+||||+.. ..++.|..+|...|+++..+||.++
T Consensus 304 I~-~~~--------------~~~~~~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~- 364 (1171)
T TIGR01054 304 VV-DVY--------------VEDEDLKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP- 364 (1171)
T ss_pred eE-EEE--------------EecccHHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC-
Confidence 10 000 01111234555666543 56899999998 9999999999999999999999986
Q ss_pred HHHHHHHHHHhcCCCCccEEEEe----cccccccCCCCC-CCeEEEcCCCCC
Q 000099 1381 EDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPDPN 1427 (2240)
Q Consensus 1381 eEReeaIk~FNs~Ds~~fVfLLS----TrAGGeGLNLQa-ADtVIifD~pWN 1427 (2240)
+..+++|.+++.+ +||+ |+++++||||+. +++|||||.|--
T Consensus 365 ---~~~l~~Fr~G~~~---vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 365 ---KEDYEKFAEGEID---VLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ---HHHHHHHHcCCCC---EEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 3689999976554 4555 699999999999 799999999943
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.2e-17 Score=164.75 Aligned_cols=97 Identities=12% Similarity=0.227 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Q 000099 1938 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017 (2240)
Q Consensus 1938 ~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na 2017 (2240)
.|+.-+..++.+|+ |..++.|.+++++.++||||.+ |++||||++|++||+.++|.++++|..||.|||.||
T Consensus 3 ~l~~~L~~~~~~~~-------~~~s~~F~~PV~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na 74 (99)
T cd05508 3 QLSKLLKFALERMK-------QPGAEPFLKPVDLEQFPDYAQY-VFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNA 74 (99)
T ss_pred HHHHHHHHHHHHHh-------CcCcchhcCCCChhhCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 34555666666663 5679999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHH
Q 000099 2018 MQFYGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2018 ~~yn~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
+.||+++|.++.+|..|.++|...|
T Consensus 75 ~~YN~~~s~i~~~A~~l~~~~~~e~ 99 (99)
T cd05508 75 IIYNGGDHKLTQAAKAIVKICEQEM 99 (99)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999997643
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.2e-17 Score=166.87 Aligned_cols=102 Identities=17% Similarity=0.282 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
+...|..++.+|.. +..+..|+.+++..++||||++ |++||||.+|..||++++|.++.+|..||.|||+||+
T Consensus 4 lr~~L~~il~~l~~------~~~~~~F~~pv~~~~~pdY~~v-I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~ 76 (112)
T cd05528 4 LRLFLRDVLKRLAS------DKRFNAFTKPVDEEEVPDYYEI-IKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNAL 76 (112)
T ss_pred HHHHHHHHHHHHHh------CCCchhhcCCCCccccCcHHHH-HcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHH
Confidence 34457888888863 4677999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCC----cHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2019 QFYGFS----HEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2019 ~yn~~~----sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
.||+++ |.+|.+|+.|+++|..++...+|
T Consensus 77 ~yN~~~s~~~s~i~~~A~~L~~~~~~~~~~~~~ 109 (112)
T cd05528 77 EYNPDRDPADKLIRSRACELRDEVHAMIEAELD 109 (112)
T ss_pred HHCCCCCccccHHHHHHHHHHHHHHHHHHhcCC
Confidence 999995 79999999999999999999888
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver |
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-17 Score=167.23 Aligned_cols=96 Identities=14% Similarity=0.250 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000099 1943 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2022 (2240)
Q Consensus 1943 ck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~ 2022 (2240)
.+.|+++|. -+..+..|+.+|.+..+|+||++ |++||||.+|++||+.++|.++.+|..||.|||.||+.||+
T Consensus 5 l~~ii~~l~------~~~~s~~F~~pv~~~~~p~Y~~~-I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 77 (112)
T cd05511 5 LDEIVNELK------NLPDSWPFHTPVNKKKVPDYYKI-IKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNG 77 (112)
T ss_pred HHHHHHHHH------hCCCchhhcCCCChhhcccHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 456777775 35688999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2023 FSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2023 ~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
++|.+|.+|..|+++|.+++...
T Consensus 78 ~~s~i~~~A~~l~~~~~~~~~~~ 100 (112)
T cd05511 78 PDSVYTKKAKEMLELAEELLAER 100 (112)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998865
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-15 Score=196.07 Aligned_cols=372 Identities=16% Similarity=0.158 Sum_probs=202.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
.+|.++|.+++..+.... .+...+|...||+|||..++.++...+.. .+.+|||||.. |+.||...|.++++ ..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~ 217 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-AP 217 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 479999999999887643 34557999999999999998877766542 35799999976 77899999999874 56
Q ss_pred EEEEecchh--hHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC--chhHH-----HHHh-hc
Q 000099 1078 CIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD--RESVL-----ARDL-DR 1147 (2240)
Q Consensus 1078 Vvvy~Gskd--eRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN--~~SKl-----skaL-k~ 1147 (2240)
+.+++|... ++...+. .+..+..+|||+|+..+. +.-.++.+|||||+|...- ..... ...+ ..
T Consensus 218 v~~~~s~~s~~~r~~~~~-~~~~g~~~IVVgTrsal~-----~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~ 291 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWR-KAKRGEAKVVIGARSALF-----LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAK 291 (679)
T ss_pred EEEEECCCCHHHHHHHHH-HHHcCCCCEEEeccHHhc-----ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhh
Confidence 777777533 3333332 244567899999998764 2234678999999998632 11111 1111 12
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhc-CCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFS-QPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~-kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
......|++||||-. ..++.... +.+.. -...+.+. .+.-..... + ...+.. ..-...+.+
T Consensus 292 ~~~~~~il~SATps~---~s~~~~~~----g~~~~-~~l~~r~~~~~~p~v~~i---d---~~~~~~----~~~~~~ls~ 353 (679)
T PRK05580 292 LENIPVVLGSATPSL---ESLANAQQ----GRYRL-LRLTKRAGGARLPEVEII---D---MRELLR----GENGSFLSP 353 (679)
T ss_pred ccCCCEEEEcCCCCH---HHHHHHhc----cceeE-EEeccccccCCCCeEEEE---e---chhhhh----hcccCCCCH
Confidence 334468889999942 22211110 00000 00000000 000000000 0 000000 000000111
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
.++..+++.+.. .....+.++ .. ++... . +..-|.
T Consensus 354 ~l~~~i~~~l~~----g~qvll~~n---------------------rr---------------Gy~~~----~-~C~~Cg 388 (679)
T PRK05580 354 PLLEAIKQRLER----GEQVLLFLN---------------------RR---------------GYAPF----L-LCRDCG 388 (679)
T ss_pred HHHHHHHHHHHc----CCeEEEEEc---------------------CC---------------CCCCc----e-EhhhCc
Confidence 111111111110 000111110 00 00000 0 011111
Q ss_pred CC----CCCCCC-ccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCC
Q 000099 1307 HP----LLNYPY-FSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTS 1379 (2240)
Q Consensus 1307 HP----~L~~p~-~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs 1379 (2240)
+. .+..+. +........+..||....+....+.+ |.. .|..+....+.+++.|... ++++.++|++++
T Consensus 389 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C---g~~--~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~ 463 (679)
T PRK05580 389 WVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPEC---GST--DLVPVGPGTERLEEELAELFPEARILRIDRDTT 463 (679)
T ss_pred CccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCC---cCC--eeEEeeccHHHHHHHHHHhCCCCcEEEEecccc
Confidence 11 111000 00001111223333322222112211 111 2444455667777778765 889999999986
Q ss_pred --HHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC---CCh---------hhHHHHhhhhhccCCcc
Q 000099 1380 --LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD---PNP---------KNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1380 --~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p---WNP---------~~d~QAiGRAhRIGQKK 1445 (2240)
.+++++++++|.+++.+ ||++|+..+.|+|++.++.|+++|.| ..| ..+.|+.||++|.+...
T Consensus 464 ~~~~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g 540 (679)
T PRK05580 464 RRKGALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPG 540 (679)
T ss_pred ccchhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCC
Confidence 46799999999987666 78999999999999999999888776 223 67999999999998888
Q ss_pred eEEEEEE
Q 000099 1446 EVKVIYM 1452 (2240)
Q Consensus 1446 eV~VyrL 1452 (2240)
.|.+...
T Consensus 541 ~viiqT~ 547 (679)
T PRK05580 541 EVLIQTY 547 (679)
T ss_pred EEEEEeC
Confidence 8876554
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-14 Score=193.15 Aligned_cols=105 Identities=19% Similarity=0.165 Sum_probs=89.5
Q ss_pred CCeEEEEecchhHHHHHHHHHHh---cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEE
Q 000099 1344 GHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1420 (2240)
Q Consensus 1344 GhKVLIFSQ~t~~LDiLed~L~~---rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVI 1420 (2240)
...+|||+.....++.+.+.|.. .++.++.|||+++.++|.++++.|..+.. -|||||+++++||++.++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~r---kVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRR---KVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCe---EEEEecchHhhcccccCceEEE
Confidence 56899999999999999999987 47899999999999999999999986433 3799999999999999999999
Q ss_pred EcCCC----CChhh--------------HHHHhhhhhccCCcceEEEEEEeh
Q 000099 1421 IYDPD----PNPKN--------------EEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1421 ifD~p----WNP~~--------------d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.++.+ +||.. +.||.||++|.+ +=.+|+|++
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~---~G~cyrL~t 334 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLE---PGVCYRLWS 334 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCC---CCEEEEeCC
Confidence 99876 45554 789999999983 445567765
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-15 Score=195.87 Aligned_cols=317 Identities=20% Similarity=0.209 Sum_probs=219.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C-
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---P- 1074 (2240)
.|+.||.++++.+.. +.+.|+.-.||+|||..++..|...+. +.....+|+|-|+. |..+....|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~~----G~~vvVtTgTgSGKTe~FllPIld~~l-~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIRE----GRNVVVTTGTGSGKTESFLLPILDHLL-RDPSARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHHC----CCCEEEECCCCCchhHHHHHHHHHHHh-hCcCccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 499999999988876 889999999999999999998877665 34445889999976 5666888888885 4
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh------hhhccccCcceEecccccccCC-chhHHHHHhhc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDR 1147 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD------~s~L~kikWd~VIIDEAHrLKN-~~SKlskaLk~ 1147 (2240)
.+.+..|.|.....++. .+.....+||||+|+++... ...+....++||||||+|-+.. ..|-+.-.+++
T Consensus 145 ~v~~~~y~Gdt~~~~r~---~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRR 221 (851)
T COG1205 145 KVTFGRYTGDTPPEERR---AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRR 221 (851)
T ss_pred cceeeeecCCCChHHHH---HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHH
Confidence 57788888865433221 35567899999999998652 1222223589999999999876 34444444443
Q ss_pred c-------c-cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhh-hcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000099 1148 Y-------R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDW-FSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (2240)
Q Consensus 1148 L-------k-s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~-F~kPf~~~g~~~~~e~d~l~~Ee~~lii~ 1218 (2240)
+ . ....++.|||- ++...|... |...|... ..
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~~~-v~------------------ 262 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFEVP-VD------------------ 262 (851)
T ss_pred HHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcceee-cc------------------
Confidence 3 1 34578888883 122222222 22221110 00
Q ss_pred HHHHHhhHHHHHhhhhhhccCCCCceEEEEE-eccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHH
Q 000099 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLR-CRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 1297 (2240)
Q Consensus 1219 RLhklLrPFmLRRlKkDVekdLP~KvE~vV~-c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~ni 1297 (2240)
+.--|....+++. -+.......
T Consensus 263 ------------------~~g~~~~~~~~~~~~p~~~~~~~--------------------------------------- 285 (851)
T COG1205 263 ------------------EDGSPRGLRYFVRREPPIRELAE--------------------------------------- 285 (851)
T ss_pred ------------------CCCCCCCceEEEEeCCcchhhhh---------------------------------------
Confidence 0001111111111 100000000
Q ss_pred HHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHH----HHHHhcC----c
Q 000099 1298 CMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILE----EYLQWRQ----L 1369 (2240)
Q Consensus 1298 lmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLe----d~L~~rG----i 1369 (2240)
. ....+...+..++..+...+-++|+|+.+...+..+. ..+...+ .
T Consensus 286 -------------------------~-~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~ 339 (851)
T COG1205 286 -------------------------S-IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLD 339 (851)
T ss_pred -------------------------h-cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhh
Confidence 0 0123455666777777888999999999999999886 3344444 5
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC-ChhhHHHHhhhhhccCCcceEE
Q 000099 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1370 ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW-NP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
.+....|++..++|.++...|+.++.. ++++|.++..|+|+...|.||++-.|- .-..+.|+.||++|-+|.--+.
T Consensus 340 ~v~~~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~ 416 (851)
T COG1205 340 AVSTYRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVL 416 (851)
T ss_pred heeeccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEE
Confidence 577889999999999999999987776 899999999999999999999999999 8899999999999999554443
Q ss_pred E
Q 000099 1449 V 1449 (2240)
Q Consensus 1449 V 1449 (2240)
+
T Consensus 417 ~ 417 (851)
T COG1205 417 V 417 (851)
T ss_pred E
Confidence 3
|
|
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-17 Score=162.77 Aligned_cols=96 Identities=18% Similarity=0.332 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na 2017 (2240)
++.|..+|++|.. +..+.+|..+ |.+.++|+||++ |.+||||.+|+.||+.+.|.++.+|..||+|||.||
T Consensus 2 ~~~c~~il~~l~~------~~~~~~F~~pv~~~~~~~p~Y~~~-I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na 74 (99)
T cd05506 2 MKQCGTLLRKLMK------HKWGWVFNAPVDVVALGLPDYFDI-IKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANA 74 (99)
T ss_pred HHHHHHHHHHHHh------CCCCccccCCCCccccCCCCHHHH-HcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 4589999999974 3457899887 446689999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHHHHHHHHHHHHH
Q 000099 2018 MQFYGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2018 ~~yn~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
+.||+++|.+|.+|..|+++|..+|
T Consensus 75 ~~yn~~~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 75 MRYNPPGNDVHTMAKELLKIFETRW 99 (99)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-16 Score=162.32 Aligned_cols=91 Identities=10% Similarity=0.259 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
...|+.++.+|. .+..+..|+.++.+.++||||++ |++||||.+|++||++++|.++++|..||.|||.||+.
T Consensus 3 ~~~l~~il~~l~------~~~~~~~F~~pVd~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 75 (98)
T cd05512 3 EVLLRKTLDQLQ------EKDTAEIFSEPVDLSEVPDYLDH-IKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLA 75 (98)
T ss_pred HHHHHHHHHHHH------hCCCchhhcCCCCccccCCHHHH-hcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 346778888886 47889999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHH
Q 000099 2020 FYGFSHEVRSEARKVHDL 2037 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~ 2037 (2240)
||+++|.+|++|..|++.
T Consensus 76 yN~~~s~~~~~A~~l~~~ 93 (98)
T cd05512 76 YNAKDTIFYRAAVRLRDQ 93 (98)
T ss_pred HCCCCCHHHHHHHHHHHh
Confidence 999999999999999874
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=161.10 Aligned_cols=92 Identities=18% Similarity=0.283 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
+++.|.+|++.|.. +..+.+|+.++.....||||++ |++||||.+|.+||++++|.++++|..||.|||.||+
T Consensus 2 l~~~l~~il~~l~~------~~~~~~F~~PV~~~~~pdY~~v-Ik~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 74 (98)
T cd05513 2 LQKALEQLIRQLQR------KDPHGFFAFPVTDFIAPGYSSI-IKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAM 74 (98)
T ss_pred HHHHHHHHHHHHHc------CCccccccCcCCccccccHHHH-HcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 35678899999873 3457799999998999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDL 2037 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~ 2037 (2240)
.||+++|.+|++|..|...
T Consensus 75 ~yN~~~s~~~~~A~~L~~~ 93 (98)
T cd05513 75 KYNKPDTIYYKAAKKLLHS 93 (98)
T ss_pred HHCCCCCHHHHHHHHHHHh
Confidence 9999999999999999754
|
The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=195.08 Aligned_cols=314 Identities=22% Similarity=0.281 Sum_probs=203.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-----hCCCCC-eEEEechH-HHHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-----KGNYGP-HLIIVPNA-VLVNWKSELHK 1071 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~-----kg~~GP-~LIVVP~S-LL~QW~~Ef~K 1071 (2240)
...+|.|..++-.+.+ +..+|-...+|+|||+..+..+...... .+. || .|||||+. +..|..+++.+
T Consensus 386 ~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gd-GPi~li~aPtrela~QI~r~~~k 460 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGD-GPIALILAPTRELAMQIHREVRK 460 (997)
T ss_pred CCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhhcCCChhhCC-CceEEEEcCCHHHHHHHHHHHHH
Confidence 3677888888877766 8888999999999999997665533322 223 55 58899987 45555555555
Q ss_pred HC--CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh-----hhccccCcceEecccccccCC--chhHHH
Q 000099 1072 WL--PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR-----SKLSKVDWKYIIIDEAQRMKD--RESVLA 1142 (2240)
Q Consensus 1072 w~--PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~-----s~L~kikWd~VIIDEAHrLKN--~~SKls 1142 (2240)
|+ -++.+++.+|.......+ .+...+ ..|+|+|.+.++.-. ....-.+..|||+|||++|.. ..-..+
T Consensus 461 f~k~l~ir~v~vygg~~~~~qi--aelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~ 537 (997)
T KOG0334|consen 461 FLKLLGIRVVCVYGGSGISQQI--AELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQIT 537 (997)
T ss_pred HHhhcCceEEEecCCccHHHHH--HHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccc
Confidence 54 245555544544433332 123333 899999999876532 223334577999999999842 111122
Q ss_pred HHhhccccce-EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000099 1143 RDLDRYRCQR-RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (2240)
Q Consensus 1143 kaLk~Lks~~-RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLh 1221 (2240)
+.|..+...+ .++.++|
T Consensus 538 ~Ii~nlrpdrQtvlfSat-------------------------------------------------------------- 555 (997)
T KOG0334|consen 538 RILQNLRPDRQTVLFSAT-------------------------------------------------------------- 555 (997)
T ss_pred hHHhhcchhhhhhhhhhh--------------------------------------------------------------
Confidence 2222222111 1111111
Q ss_pred HHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1222 klLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
-|-.+..++..|.. +|- +++|-.. -.+|..+ .+.
T Consensus 556 ---fpr~m~~la~~vl~-~Pv--eiiv~~~-----svV~k~V-----------------------------------~q~ 589 (997)
T KOG0334|consen 556 ---FPRSMEALARKVLK-KPV--EIIVGGR-----SVVCKEV-----------------------------------TQV 589 (997)
T ss_pred ---hhHHHHHHHHHhhc-CCe--eEEEccc-----eeEeccc-----------------------------------eEE
Confidence 01111222222333 221 1111100 0000000 000
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHH
Q 000099 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381 (2240)
Q Consensus 1302 RKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~e 1381 (2240)
-.+|. ....||..|..||..... ..++||||+....+|.|.+-|...||.+..|||+.+..
T Consensus 590 v~V~~------------------~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~ 650 (997)
T KOG0334|consen 590 VRVCA------------------IENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQH 650 (997)
T ss_pred EEEec------------------CchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchH
Confidence 00110 024588888888887665 77999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1382 EReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+|...|.+|+++.. .+|++|+++++|||+.....||+||.+--...|++|.||++|.|.+....+|
T Consensus 651 dR~sti~dfK~~~~---~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtF 716 (997)
T KOG0334|consen 651 DRSSTIEDFKNGVV---NLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTF 716 (997)
T ss_pred HHHhHHHHHhccCc---eEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEE
Confidence 99999999997444 4899999999999999999999999999999999999999999988744333
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-16 Score=166.77 Aligned_cols=154 Identities=27% Similarity=0.377 Sum_probs=111.4
Q ss_pred CCcHHHHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Ps 1075 (2240)
+||+||.+++.-++..+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 69999999999999877654 88999999999999999998888774 89999997 6889999999888766
Q ss_pred CeEEEEecchhh----------HhHHHHHHHhhcCCcEEEEcHHHHHHhhhh-------------ccccCcceEeccccc
Q 000099 1076 VSCIYYVGAKDQ----------RSRLFSQEVAALKFNVLVTTYEFIMYDRSK-------------LSKVDWKYIIIDEAQ 1132 (2240)
Q Consensus 1076 lkVvvy~Gskde----------Rk~l~~qei~~~~fdVVITTYE~L~kD~s~-------------L~kikWd~VIIDEAH 1132 (2240)
............ ..............+++++|+..+...... +....+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 544432211000 000011123456778999999999765322 233478999999999
Q ss_pred ccCCchhHHHHHhhccccceEEEeecCCC
Q 000099 1133 RMKDRESVLARDLDRYRCQRRLLLTGTPL 1161 (2240)
Q Consensus 1133 rLKN~~SKlskaLk~Lks~~RLLLTGTPL 1161 (2240)
++.+... ++.+..+...++|+|||||.
T Consensus 157 ~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred hcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 9865332 55555588889999999995
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-15 Score=207.38 Aligned_cols=342 Identities=16% Similarity=0.246 Sum_probs=194.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-- 1074 (2240)
|.+++++|..++..++. +.+.++..+||+|||...+.+..++. . ....+|||+|+. |+.|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~-~--~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA-L--KGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH-h--cCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 34699999999988886 77889999999999984333332222 1 224799999987 66788888888764
Q ss_pred --CCeEEEEecchhhHhHH-HHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccc
Q 000099 1075 --SVSCIYYVGAKDQRSRL-FSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l-~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~ 1151 (2240)
++.+.+++|+.....+. ....+..+.++|+|+|++.+......+...++++|||||||+|....-.+-+.|
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L------ 223 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSL------ 223 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhh------
Confidence 35667777765433221 111234567999999999887765444446799999999999853111011111
Q ss_pred eEEEeecCCCCCCHH-HHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1152 RRLLLTGTPLQNDLK-ELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~-ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
-|-|- ...+. ..|.++.. . + ...... . ...+.+|...+.
T Consensus 224 ---~llGF--~~e~~~~~~~il~~---~--------------~------~~~~~~--~-----~~~~~~l~~~~~----- 263 (1638)
T PRK14701 224 ---QLLGF--YEEIIEKAWKIIYL---K--------------K------QGNIED--A-----MEKREILNKEIE----- 263 (1638)
T ss_pred ---hcCCC--hHHHHHHHHHhhhc---c--------------c------ccccch--h-----hhhhhhhhhhhh-----
Confidence 00110 00000 01111110 0 0 000000 0 001122222220
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
.+|......+.+..|...+.....+... .+.+.... .
T Consensus 264 --------~~~~~~~~ll~~SAT~~~r~~~~~l~~~-~l~f~v~~------------------------------~---- 300 (1638)
T PRK14701 264 --------KIGNKIGCLIVASATGKAKGDRVKLYRE-LLGFEVGS------------------------------G---- 300 (1638)
T ss_pred --------hcCCCccEEEEEecCCCchhHHHHHhhc-CeEEEecC------------------------------C----
Confidence 1233322233222221111000000000 00000000 0
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhH---HHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKL---LDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~---LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
.+....+...++.........|..++..+ +..+||||+.... ++.|..+|...|+++..+||. |...+
T Consensus 301 -~~~lr~i~~~yi~~~~~~k~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l 371 (1638)
T PRK14701 301 -RSALRNIVDVYLNPEKIIKEHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGF 371 (1638)
T ss_pred -CCCCCCcEEEEEECCHHHHHHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHH
Confidence 00000011111111111124455666543 6789999988764 589999999999999999994 89999
Q ss_pred HHHhcCCCCccEEEEec----ccccccCCCCC-CCeEEEcCCCC---ChhhHHHHh-------------hhhhccCCcce
Q 000099 1388 VDFNSHDSDCFIFLLSI----RAAGRGLNLQS-ADTVIIYDPDP---NPKNEEQAV-------------ARAHRIGQKRE 1446 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLST----rAGGeGLNLQa-ADtVIifD~pW---NP~~d~QAi-------------GRAhRIGQKKe 1446 (2240)
++|.+++.+ +||+| +++++|||++. +.+|||||.|- |...+.|.. ||++|-|..-+
T Consensus 372 ~~F~~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 372 DLFEEGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred HHHHcCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcch
Confidence 999986665 67777 58899999998 99999999998 777666655 99999887644
Q ss_pred E
Q 000099 1447 V 1447 (2240)
Q Consensus 1447 V 1447 (2240)
.
T Consensus 449 ~ 449 (1638)
T PRK14701 449 G 449 (1638)
T ss_pred h
Confidence 4
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=184.81 Aligned_cols=93 Identities=22% Similarity=0.246 Sum_probs=76.5
Q ss_pred HHHHHHHHHhc--CceEEeecCCCCHHHH--HHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC---C--
Q 000099 1357 LDILEEYLQWR--QLVYRRIDGTTSLEDR--ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP---N-- 1427 (2240)
Q Consensus 1357 LDiLed~L~~r--Giky~rLDGsTs~eER--eeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW---N-- 1427 (2240)
.+.+++.|... +.++.++|++++..++ .++++.|.+++.+ ||++|...+.|+|++.++.|+++|.|- .
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 56677777765 7899999999887655 8999999986666 799999999999999999998776662 2
Q ss_pred -------hhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1428 -------PKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1428 -------P~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
...+.|+.||++|.+....|.+..+
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 3678999999999998888876544
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-14 Score=188.53 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=89.2
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh---cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~---rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
.+..+|||+.....++.+.+.|.. .++.++.+||+++.++|.+++..|..+. +-|||||+++.+||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~---rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGR---RKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCC---eEEEEecchHHhcccccCceEE
Confidence 357899999999999999999986 5788999999999999999999997643 3489999999999999999999
Q ss_pred EEcCCC----CCh--------------hhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1420 IIYDPD----PNP--------------KNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1420 IifD~p----WNP--------------~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
|.++.+ |+| ..+.||.||++|.+ +-.+|+|++
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~t 337 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLYS 337 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEecC
Confidence 997765 332 36899999999973 455667755
|
|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-16 Score=153.83 Aligned_cols=97 Identities=20% Similarity=0.365 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
...|..+++.|.... +.++..|..+|++..+|+||++ |++||||.+|++||+.+.|.++.+|..||.|||.||+.
T Consensus 2 ~~~~~~i~~~l~~~~----~~~~~~F~~~~~~~~~~~Y~~~-i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~ 76 (99)
T cd04369 2 KKKLRSLLDALKKLK----RDLSEPFLEPVDPKEAPDYYEV-IKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKT 76 (99)
T ss_pred HHHHHHHHHHHHhhc----ccccHHHhcCCChhcCCCHHHH-HhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 357999999997554 7899999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHH
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
||+.+|.++..|..|+.+|..+
T Consensus 77 ~n~~~~~~~~~a~~l~~~~~~~ 98 (99)
T cd04369 77 YNGPGSPIYKDAKKLEKLFEKL 98 (99)
T ss_pred HCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=179.60 Aligned_cols=416 Identities=14% Similarity=0.193 Sum_probs=237.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWLPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~Ps 1075 (2240)
..++-|+.|.--|. .|-|.-..||.|||++++..+..... .+ ..++||+|+..|. +|...|.+|+ +
T Consensus 82 ~~ydvQliGg~~Lh------~G~Iaem~TGeGKTL~a~Lpa~~~al-~G--~~V~VvTpn~yLA~qd~e~m~~l~~~l-G 151 (896)
T PRK13104 82 RHFDVQLIGGMVLH------EGNIAEMRTGEGKTLVATLPAYLNAI-SG--RGVHIVTVNDYLAKRDSQWMKPIYEFL-G 151 (896)
T ss_pred CcchHHHhhhhhhc------cCccccccCCCCchHHHHHHHHHHHh-cC--CCEEEEcCCHHHHHHHHHHHHHHhccc-C
Confidence 34445888765442 35588899999999987665543332 22 3589999998553 3666666665 4
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHH----HHhhhhcc-----ccCcceEecccccccCCchhHHHHHhh
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI----MYDRSKLS-----KVDWKYIIIDEAQRMKDRESVLARDLD 1146 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L----~kD~s~L~-----kikWd~VIIDEAHrLKN~~SKlskaLk 1146 (2240)
+.+.++.|+.....+. .....+|+++|...| .++.-.+. ...+.++||||+|.|.= .
T Consensus 152 Ltv~~i~gg~~~~~r~-----~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI---------D 217 (896)
T PRK13104 152 LTVGVIYPDMSHKEKQ-----EAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI---------D 217 (896)
T ss_pred ceEEEEeCCCCHHHHH-----HHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh---------h
Confidence 7777776654332221 123579999999987 33331221 14789999999999841 1
Q ss_pred ccccceEEEeecCCCCCCHHHHHHHHhh----hcccc-------cC-----------C-hHHHHhhhcCCcccCCCCCCC
Q 000099 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNL----LLPEV-------FD-----------N-RKAFHDWFSQPFQKEGPTHNA 1203 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL~ELwSLLnF----LlP~i-------F~-----------S-~~sF~e~F~kPf~~~g~~~~~ 1203 (2240)
. +..-|++||.+- ...++|..++. |..+. |. . ...+.+.+ +...+.....
T Consensus 218 e--ArtPLIISg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~---~~~~~il~~~ 290 (896)
T PRK13104 218 E--ARTPLIISGAAE--DSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEEL---LTKAKLLDPG 290 (896)
T ss_pred c--cCCceeeeCCCc--cchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHH---HHhCCccCCc
Confidence 1 234577888653 22445544443 32220 00 0 00011110 0000000000
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhHHHH-HhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchh
Q 000099 1204 DDDWLETEKKVIIIHRLHQILEPFML-RRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPED 1275 (2240)
Q Consensus 1204 e~d~l~~Ee~~lii~RLhklLrPFmL-RRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~ 1275 (2240)
+ .+.........+.+...|+...+ .|-+.=|.. +....+|. ..| .+..-+.+.+.....+.+....
T Consensus 291 ~--~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~---dg~V~iVD-e~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~ 364 (896)
T PRK13104 291 E--SLYHASNIMLMHHVNAALKAHAMFHRDIDYIVK---DNQVVIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVPIQNEN 364 (896)
T ss_pred c--cccCchhhhHHHHHHHHHHHHHHhcCCCceEEE---CCEEEEEE-CCCCCcCCCCCcChHHHHHHHHHcCCCCCCCc
Confidence 0 00000111123334444443322 221111111 11111211 222 2333444445443322222111
Q ss_pred HHhhhhcC---hh---h--HHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHh
Q 000099 1276 EKRRVQKN---PI---Y--QAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQR 1342 (2240)
Q Consensus 1276 e~~~l~~~---~~---~--~ak~~~sL~nilmqLRKICNHP~L~~p~~~~l-----s~d~LirsSGKLelLdrIL~kL~a 1342 (2240)
. .+..- .. | ..+...+.......+.++-+.+.+..|..... ..........|+..+..-+.++..
T Consensus 365 ~--t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~ 442 (896)
T PRK13104 365 Q--TLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGV 442 (896)
T ss_pred e--eeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHh
Confidence 0 00000 00 0 00000011122345666665554444432211 111223345688888888888899
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCC-------
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS------- 1415 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQa------- 1415 (2240)
.|..|||||.+....+.|..+|...|+++..|+|.....+|..+.+.|+.+ . ++|+|+.+|+|+|+.=
T Consensus 443 ~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIATNmAGRGtDI~Lggn~~~~ 517 (896)
T PRK13104 443 RKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIATNMAGRGTDIVLGGSLAAD 517 (896)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEeccCccCCcceecCCchhhh
Confidence 999999999999999999999999999999999999999999999999864 2 8999999999999762
Q ss_pred -------------------------------CCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1416 -------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1416 -------------------------------ADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
-=+||.-..+-|...+.|-.||++|-|......+| +++|+.+++
T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~--lSleD~l~~ 592 (896)
T PRK13104 518 LANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY--LSLEDNLMR 592 (896)
T ss_pred hhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE--EEcCcHHHH
Confidence 23789999999999999999999999998877655 345555544
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.5e-15 Score=182.21 Aligned_cols=321 Identities=17% Similarity=0.230 Sum_probs=203.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHH-HHHHh----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAY-LMEFK----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~-Lle~k----g~~GP~LIVVP~S-LL~QW~~Ef~Kw~ 1073 (2240)
...|-|..++..++. +.+++-|..+|.|||+..++.|.. |.... ...-..+||.|.. |+.|-..|+.++.
T Consensus 158 ~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 456788888888887 778999999999999998886544 33333 2223679999977 6678889999887
Q ss_pred --CC--CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh----ccccCcceEecccccccCCchhHHHHHh
Q 000099 1074 --PS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK----LSKVDWKYIIIDEAQRMKDRESVLARDL 1145 (2240)
Q Consensus 1074 --Ps--lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~----L~kikWd~VIIDEAHrLKN~~SKlskaL 1145 (2240)
++ +.+..+........+ ........++++|.|+..++..... +.-....++|+||++++.++. -+...+
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk--~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~-~f~~Ql 310 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQK--PAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPE-FFVEQL 310 (593)
T ss_pred CCCCCchhhhhcccccchhhc--cchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChh-hHHHHH
Confidence 32 333333222111111 1123345689999999998877543 344456779999999998761 111111
Q ss_pred hccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhh
Q 000099 1146 DRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILE 1225 (2240)
Q Consensus 1146 k~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLr 1225 (2240)
.++|+.+.- |.+. ..-|...+. .. +..+..++
T Consensus 311 --------------------a~I~sac~s--~~i~--~a~FSat~~----------------~~-------VEE~~~~i- 342 (593)
T KOG0344|consen 311 --------------------ADIYSACQS--PDIR--VALFSATIS----------------VY-------VEEWAELI- 342 (593)
T ss_pred --------------------HHHHHHhcC--cchh--hhhhhcccc----------------HH-------HHHHHHHh-
Confidence 111111110 1110 000100000 00 00011111
Q ss_pred HHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1226 PFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1226 PFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
+.++ ...+|- ....+ ++.+.+=
T Consensus 343 -------~~~~-------~~vivg--~~~sa--------------------------------------~~~V~Qe---- 364 (593)
T KOG0344|consen 343 -------KSDL-------KRVIVG--LRNSA--------------------------------------NETVDQE---- 364 (593)
T ss_pred -------hccc-------eeEEEe--cchhH--------------------------------------hhhhhhh----
Confidence 1111 001111 11100 0000000
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHH-HhcCceEEeecCCCCHHHHH
Q 000099 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYL-QWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1306 NHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L-~~rGiky~rLDGsTs~eERe 1384 (2240)
++| ....-+|+..+..++... -.-.+|||.|..+-+..|...| ..-++.+..+||.-++.+|.
T Consensus 365 ---lvF-----------~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrd 428 (593)
T KOG0344|consen 365 ---LVF-----------CGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRD 428 (593)
T ss_pred ---hee-----------eecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHH
Confidence 000 112235666666666654 3468999999999999999999 78899999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+.+++|+.+... +|++|++.++|||+.+++.||+||.|-+-..|++|+||++|.|+......||-
T Consensus 429 e~~~~FR~g~Iw---vLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfyt 493 (593)
T KOG0344|consen 429 ETMERFRIGKIW---VLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYT 493 (593)
T ss_pred HHHHHHhccCee---EEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEec
Confidence 999999975444 69999999999999999999999999999999999999999999877655554
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-14 Score=191.71 Aligned_cols=309 Identities=23% Similarity=0.195 Sum_probs=193.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CCCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PSVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~-Pslk 1077 (2240)
+|++.|..+|.-.+. .+.|.|+|.+||+|||++++..|...+.. ..++++.|||.. |...-.++|.+|. -+++
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~--~~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLE--GGGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 799999999965443 17889999999999999998877765542 257999999965 6777888888554 3789
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCc------hhHHHHHhhccc
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR------ESVLARDLDRYR 1149 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~------~SKlskaLk~Lk 1149 (2240)
|.+++|.-+... ......+|+||||+.+-.-... .--...++|||||+|.+... .+-.++....-.
T Consensus 106 V~~~TgD~~~~~------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~ 179 (766)
T COG1204 106 VGISTGDYDLDD------ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE 179 (766)
T ss_pred EEEecCCcccch------hhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc
Confidence 999999876442 2346789999999987432111 12236789999999999764 122333222222
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmL 1229 (2240)
.-+.++||||- .|.. +|-+|++..... ...+|.-+
T Consensus 180 ~~rivgLSATl--pN~~------------------evA~wL~a~~~~-------------------------~~~rp~~l 214 (766)
T COG1204 180 LIRIVGLSATL--PNAE------------------EVADWLNAKLVE-------------------------SDWRPVPL 214 (766)
T ss_pred ceEEEEEeeec--CCHH------------------HHHHHhCCcccc-------------------------cCCCCccc
Confidence 34788999993 2333 344444321100 00011111
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
+|. .|.. ..+..+.-.. +
T Consensus 215 ~~~-------v~~~-~~~~~~~~~~----------------------k-------------------------------- 232 (766)
T COG1204 215 RRG-------VPYV-GAFLGADGKK----------------------K-------------------------------- 232 (766)
T ss_pred ccC-------Cccc-eEEEEecCcc----------------------c--------------------------------
Confidence 110 0000 0000000000 0
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-------------C--------
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-------------Q-------- 1368 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-------------G-------- 1368 (2240)
.....+...+..++.+..+.+.-|||||..+......+..|... .
T Consensus 233 --------------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 298 (766)
T COG1204 233 --------------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILI 298 (766)
T ss_pred --------------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhcccccccccc
Confidence 00001122334445556677888999988887766666665520 0
Q ss_pred ----------------ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE-----cC----
Q 000099 1369 ----------------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-----YD---- 1423 (2240)
Q Consensus 1369 ----------------iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi-----fD---- 1423 (2240)
..+..-|.+++.++|.-+-+.|+.+.-+ +|+||...+.|+||++ ++||+ ||
T Consensus 299 ~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik---Vlv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g 374 (766)
T COG1204 299 PETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK---VLVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGG 374 (766)
T ss_pred ccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCce---EEEechHHhhhcCCcc-eEEEEeeeEEEcCCCC
Confidence 0122346678899999999999975554 7999999999999994 55555 44
Q ss_pred -CCCChhhHHHHhhhhhccCCc
Q 000099 1424 -PDPNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1424 -~pWNP~~d~QAiGRAhRIGQK 1444 (2240)
-+-++..+.|..|||+|.|=.
T Consensus 375 ~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 375 IVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred eEECchhhHhhccCcCCCCCcC
Confidence 334678899999999998844
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-15 Score=156.28 Aligned_cols=120 Identities=31% Similarity=0.452 Sum_probs=111.1
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc
Q 000099 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1407 (2240)
Q Consensus 1328 GKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAG 1407 (2240)
.|+..+..++.++...+.++||||.....++.+.++|...++.+..++|+++..+|..+++.|+.++ ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888888888887767899999999999999999999999999999999999999999999999755 4588899999
Q ss_pred cccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1408 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1408 GeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
++|+|++.+++||+++++|++..++|++||++|.|+++.|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887664
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-13 Score=181.86 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcC---ceEEeecCCCCHHHH----HHHHHHH-hcCCCCccEEEEe
Q 000099 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDR----ESAIVDF-NSHDSDCFIFLLS 1403 (2240)
Q Consensus 1332 lLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rG---iky~rLDGsTs~eER----eeaIk~F-Ns~Ds~~fVfLLS 1403 (2240)
++..++.. ...+++|||||+.+..+..+.+.|+..+ +.+..+||.++..+| .++++.| +++......|||+
T Consensus 549 ~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVa 627 (878)
T PRK09694 549 LLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVA 627 (878)
T ss_pred HHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEE
Confidence 34444443 3578899999999999999999998765 678999999999999 5678899 4332222357999
Q ss_pred cccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCc
Q 000099 1404 IRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1404 TrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQK 1444 (2240)
|.+...|||+ ++|+||....| ...++||+||+||.|.+
T Consensus 628 TQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 628 TQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred Ccchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9999999999 58999987666 57899999999999875
|
|
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.1e-16 Score=188.41 Aligned_cols=109 Identities=17% Similarity=0.275 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
-+.|+.++..+....+.+|+.+..+|+.+|+++++|+||.+ |+.||||.+|+.+|+.++|.++++|+.||.|||+||+.
T Consensus 144 ~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~~PdYy~i-Ik~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~~ 222 (371)
T COG5076 144 YADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKREYPDYYEI-IKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKL 222 (371)
T ss_pred HHHHHHHHHHHHHhhcccccccccccccCCccccCCChhee-ecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 44688888888888899999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDLLKIAFPDT 2049 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~~k~~fP~~ 2049 (2240)
||+++|.||.+|..|.++|...++.+.+..
T Consensus 223 yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~ 252 (371)
T COG5076 223 YNGPDSSVYVDAKELEKYFLKLIEEIPEEM 252 (371)
T ss_pred ccCCCcchhhhhHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999777643
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.5e-13 Score=171.75 Aligned_cols=423 Identities=14% Similarity=0.177 Sum_probs=227.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH----HHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN----WKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q----W~~Ef~Kw~ 1073 (2240)
|...++-|+-|.--|. .|.|.-..||.|||+++...+ ++.... ...+-||+|+..|.. |...+.+++
T Consensus 78 g~~~~dvQlig~l~l~------~G~iaEm~TGEGKTLvA~l~a-~l~al~--G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 78 GLRPFDVQIIGGIVLH------EGNIAEMKTGEGKTLTATLPV-YLNALT--GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCCchhHHHHHHHHh------cCCcccccCCCCCcHHHHHHH-HHHHHc--CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 4345566988865442 345888999999999985444 333222 346788899886643 666666655
Q ss_pred CCCeEEEEecch--hhHhHHHHHHHhhcCCcEEEEcHHHH-----HHh----hhhccccCcceEecccccccCCchhHHH
Q 000099 1074 PSVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFI-----MYD----RSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (2240)
Q Consensus 1074 PslkVvvy~Gsk--deRk~l~~qei~~~~fdVVITTYE~L-----~kD----~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (2240)
++.|.+..+.. ..|+. ....+|+-+|-..| +.. ...+-...+.++||||++.+.=
T Consensus 149 -Gl~vg~i~~~~~~~~r~~-------~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLi------ 214 (796)
T PRK12906 149 -GLTVGLNLNSMSPDEKRA-------AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILI------ 214 (796)
T ss_pred -CCeEEEeCCCCCHHHHHH-------HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheee------
Confidence 57777776643 33322 23567777775443 222 1222234789999999998741
Q ss_pred HHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCCh------HHHHhhhcCCcccCCCCCCCChhhHHH------
Q 000099 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR------KAFHDWFSQPFQKEGPTHNADDDWLET------ 1210 (2240)
Q Consensus 1143 kaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~------~sF~e~F~kPf~~~g~~~~~e~d~l~~------ 1210 (2240)
. .+..-|++||.+- ...++|..++-+...+-... ......|..--. .....-.+......
T Consensus 215 ---D--eartPLiisg~~~--~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~-~k~v~lte~G~~~~e~~~~i 286 (796)
T PRK12906 215 ---D--EARTPLIISGQAE--KATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEK-TKTISLTEQGIRKAEKLFGL 286 (796)
T ss_pred ---c--cCCCceecCCCCC--cchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcc-cCceeecHHHHHHHHHHcCC
Confidence 1 1233567777652 33345544433221111000 000000000000 00000000000000
Q ss_pred -----HHHHHHHHHHHHHhhHH-HHHhhhhhhccCCCCceEEEEEe------ccCHHHHHHHHHHHHccCcccCchhHHh
Q 000099 1211 -----EKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRC------RMSAIQSAIYDWIKATGTLRVDPEDEKR 1278 (2240)
Q Consensus 1211 -----Ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~KvE~vV~c------~LS~~Qr~LYk~L~~~~~l~ld~~~e~~ 1278 (2240)
.......+.+...|+.. ++.+-+.=|. .+....+|.- +-..+..-+.+.+.....+.+.......
T Consensus 287 ~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV---~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~ 363 (796)
T PRK12906 287 DNLYDSENTALAHHIDQALRANYIMLKDIDYVV---QDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTL 363 (796)
T ss_pred ccccCchhhhHHHHHHHHHHHHHHHhcCCcEEE---ECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceee
Confidence 00001122233333332 2222221111 1122222210 1112333444444433322222111000
Q ss_pred ------hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hh-hHhhcccHHHHHHHHHHHHHhcCCeE
Q 000099 1279 ------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KD-FLVKSCGKLWILDRILIKLQRTGHRV 1347 (2240)
Q Consensus 1279 ------~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls----~d-~LirsSGKLelLdrIL~kL~atGhKV 1347 (2240)
..+.......+...+.......++++-+.+.+..|...... .+ .......|+..|...+..+...+..|
T Consensus 364 a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pv 443 (796)
T PRK12906 364 ATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPV 443 (796)
T ss_pred eeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCE
Confidence 00000000000001111223456777666655544432211 11 12233458888888888888899999
Q ss_pred EEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCC---CCC-----eE
Q 000099 1348 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ---SAD-----TV 1419 (2240)
Q Consensus 1348 LIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQ---aAD-----tV 1419 (2240)
||||.+....+.|...|...|+++..|+|.....++..+...|.. +. ++|+|+.+|+|+|+. .+. +|
T Consensus 444 LI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~---VtIATnmAGRGtDI~l~~~V~~~GGLhV 518 (796)
T PRK12906 444 LVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA---VTIATNMAGRGTDIKLGPGVKELGGLAV 518 (796)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce---EEEEeccccCCCCCCCCcchhhhCCcEE
Confidence 999999999999999999999999999999886666666555553 22 899999999999995 677 99
Q ss_pred EEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1420 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1420 IifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
|+++.|-|...|.|+.||++|.|.......| ++.++.++.
T Consensus 519 I~te~pes~ri~~Ql~GRtGRqG~~G~s~~~--~sleD~l~~ 558 (796)
T PRK12906 519 IGTERHESRRIDNQLRGRSGRQGDPGSSRFY--LSLEDDLMR 558 (796)
T ss_pred EeeecCCcHHHHHHHhhhhccCCCCcceEEE--EeccchHHH
Confidence 9999999999999999999999998877544 334555543
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-12 Score=171.05 Aligned_cols=412 Identities=17% Similarity=0.233 Sum_probs=235.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-H---HHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-N---WKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-Q---W~~Ef~Kw~ 1073 (2240)
|...++-|+-|.--| +.|.|.-..||.|||++++..+ ++....+. .+-||+|+..|. + |...+.+++
T Consensus 79 g~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa-~l~aL~G~--~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 79 GMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPA-YLNALTGK--GVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHH-HHHHHcCC--CEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 434555588887533 2355888999999999875544 32222332 466999998653 3 555555544
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh----h-----hhccccCcceEecccccccCCchhHHHHH
Q 000099 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----R-----SKLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (2240)
Q Consensus 1074 PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD----~-----s~L~kikWd~VIIDEAHrLKN~~SKlska 1144 (2240)
++++.+..|......+. .....+|+++|...|--| . ..+....+.++||||++.|.
T Consensus 150 -Glsv~~i~~~~~~~er~-----~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL--------- 214 (830)
T PRK12904 150 -GLSVGVILSGMSPEERR-----EAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL--------- 214 (830)
T ss_pred -CCeEEEEcCCCCHHHHH-----HhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe---------
Confidence 57777776654332211 113479999998877322 1 11233478999999999984
Q ss_pred hhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCCh------------------HHHHhhhcCCcccCCCCCCCChh
Q 000099 1145 LDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNR------------------KAFHDWFSQPFQKEGPTHNADDD 1206 (2240)
Q Consensus 1145 Lk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~------------------~sF~e~F~kPf~~~g~~~~~e~d 1206 (2240)
+.. +..-|++||.+- ...++|..++-+...+-... ....+.|... .
T Consensus 215 IDe--ArtpLiiSg~~~--~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~-----------~- 278 (830)
T PRK12904 215 IDE--ARTPLIISGPAE--DSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIE-----------N- 278 (830)
T ss_pred ecc--CCCceeeECCCC--cccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCc-----------c-
Confidence 122 233477777643 22345555544333221110 0111111100 0
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHH-HhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHHh
Q 000099 1207 WLETEKKVIIIHRLHQILEPFML-RRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR 1278 (2240)
Q Consensus 1207 ~l~~Ee~~lii~RLhklLrPFmL-RRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~e~~ 1278 (2240)
+.........+.+...|+...+ .+-+.=|. .+....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 279 -ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV---~dg~V~ivD-e~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~ 353 (830)
T PRK12904 279 -LYDPENIALVHHLNQALRAHELFKRDVDYIV---KDGEVVIVD-EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTL 353 (830)
T ss_pred -ccChhhhHHHHHHHHHHHHHHHHhcCCcEEE---ECCEEEEEE-CCCCccCCCCccchHHHHHHHHhcCCCCCCCceee
Confidence 0000111123334444443332 22221111 112222221 222 2333444444433322222111000
Q ss_pred ------hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc-----hhhHhhcccHHHHHHHHHHHHHhcCCeE
Q 000099 1279 ------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS-----KDFLVKSCGKLWILDRILIKLQRTGHRV 1347 (2240)
Q Consensus 1279 ------~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls-----~d~LirsSGKLelLdrIL~kL~atGhKV 1347 (2240)
..+.......+...+.......|.++-+.+.+..|...... .........|+..|...+.++...+..|
T Consensus 354 a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpV 433 (830)
T PRK12904 354 ASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPV 433 (830)
T ss_pred eeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCE
Confidence 00000000000011112234567777666655544432211 1112233468899999998888899999
Q ss_pred EEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCC-----------
Q 000099 1348 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA----------- 1416 (2240)
Q Consensus 1348 LIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaA----------- 1416 (2240)
||||......+.|...|...|+++..|+|. ..+|+..|..|...... ++|+|+.+|+|+|+.-.
T Consensus 434 LIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNmAGRGtDI~LgGn~~~~~~~~~ 508 (830)
T PRK12904 434 LVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNMAGRGTDIKLGGNPEMLAAALL 508 (830)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecccccCCcCccCCCchhhhhhhhh
Confidence 999999999999999999999999999995 77999999999865554 89999999999997743
Q ss_pred ---------------------------CeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1417 ---------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1417 ---------------------------DtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
=+||.-..+-|...+.|..||++|-|.......| +++|+.++.
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~--lSleD~l~~ 578 (830)
T PRK12904 509 EEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY--LSLEDDLMR 578 (830)
T ss_pred hhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE--EEcCcHHHH
Confidence 3789999999999999999999999999887655 344555543
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=172.81 Aligned_cols=306 Identities=20% Similarity=0.254 Sum_probs=207.6
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH-HHHHCC--CCe
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE-LHKWLP--SVS 1077 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E-f~Kw~P--slk 1077 (2240)
.-..|..++.-++. +.+.+.-...|+|||.+....++..+.......-+||++|.+.|.+...+ +..|.. +.+
T Consensus 49 PSaIQqraI~p~i~----G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~ 124 (397)
T KOG0327|consen 49 PSAIQQRAILPCIK----GHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVS 124 (397)
T ss_pred chHHHhcccccccc----CCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccccee
Confidence 34457777766665 78888888999999999777776665444444567999999977664444 344443 345
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCC--chhHHHHHhhccccc-e
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQ-R 1152 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN--~~SKlskaLk~Lks~-~ 1152 (2240)
+..+.|....+.. .+.+.....+|++.|++.+..- ...|......+.|+||+..++. ...+++..+.++..+ .
T Consensus 125 v~~~igg~~~~~~--~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQ 202 (397)
T KOG0327|consen 125 VHACIGGTNVRRE--DQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQ 202 (397)
T ss_pred eeeecCcccchhh--hhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchh
Confidence 6655554443322 1234456689999999887643 3356666789999999999864 344566666666443 4
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
.+++|||- ..|+..+ .. +|...|. .+-+.
T Consensus 203 v~l~SAT~----p~~vl~v-----------t~---~f~~~pv---------------------------------~i~vk 231 (397)
T KOG0327|consen 203 VVLLSATM----PSDVLEV-----------TK---KFMREPV---------------------------------RILVK 231 (397)
T ss_pred heeecccC----cHHHHHH-----------HH---HhccCce---------------------------------EEEec
Confidence 67777772 0111000 00 0000000 00000
Q ss_pred hhhhccCCCCceEEEEEeccC-HHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1233 VEDVEGSLPPKVSIVLRCRMS-AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c~LS-~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
|.+ ++ +.++.+|-
T Consensus 232 k~~----------------ltl~gikq~~i-------------------------------------------------- 245 (397)
T KOG0327|consen 232 KDE----------------LTLEGIKQFYI-------------------------------------------------- 245 (397)
T ss_pred chh----------------hhhhheeeeee--------------------------------------------------
Confidence 000 00 00000000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
...+ ..|+..|..+.. .-...+|||+...-++.|.+.|..+++....++|.+...+|..+++.|+
T Consensus 246 -----~v~k------~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~ 310 (397)
T KOG0327|consen 246 -----NVEK------EEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFR 310 (397)
T ss_pred -----eccc------cccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhh
Confidence 0000 016666666665 3456899999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceE
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV 1447 (2240)
.+.+. +|++|+..++|+|++.++.||+||.|-|...|++|+||++|.|-+.-+
T Consensus 311 ~gssr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~ 363 (397)
T KOG0327|consen 311 SGSSR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVA 363 (397)
T ss_pred cCCce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCcee
Confidence 88777 899999999999999999999999999999999999999999966543
|
|
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-15 Score=145.24 Aligned_cols=84 Identities=20% Similarity=0.364 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000099 1943 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2022 (2240)
Q Consensus 1943 ck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~ 2022 (2240)
|.++++.|. .+.++..|..+|....+|+||.+ |++||||.+|.+||+.+.|.++++|..||.+||.||+.||+
T Consensus 1 C~~il~~l~------~~~~~~~F~~~~~~~~~p~y~~~-i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~ 73 (84)
T PF00439_consen 1 CREILEELM------KHPISSPFSKPVDPKEYPDYYEI-IKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNP 73 (84)
T ss_dssp HHHHHHHHH------TSTTGGGGSSSTHTTTSTTHHHH-SSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHH------cCCCchhhcCCCChhhCCCHHHH-HhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCC
Confidence 899999986 45599999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHH
Q 000099 2023 FSHEVRSEARK 2033 (2240)
Q Consensus 2023 ~~sev~~dA~~ 2033 (2240)
++|.+|.+|++
T Consensus 74 ~~s~~~~~A~~ 84 (84)
T PF00439_consen 74 PDSPIYKAAEK 84 (84)
T ss_dssp TTSHHHHHHHH
T ss_pred CcCHHHHHhcC
Confidence 99999999974
|
Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A .... |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-14 Score=179.78 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=102.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC-CCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL-PSV 1076 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~-Psl 1076 (2240)
.+|||||..++....+.+..+-+|-|-+.+|+|||++++-+...+.. .++|++||. +||.|-.+|...-. -.+
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~~ 234 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELDF 234 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCccc
Confidence 58999999999999999988888988888999999999988777654 578999996 57777444432211 012
Q ss_pred e-EEEEecchhhH------------------hHHHH---HHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEeccccc
Q 000099 1077 S-CIYYVGAKDQR------------------SRLFS---QEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQ 1132 (2240)
Q Consensus 1077 k-Vvvy~GskdeR------------------k~l~~---qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAH 1132 (2240)
. ..++...+-.| +.++. ......+.-||++||+.+-.-. ...-.-.|++||+||||
T Consensus 235 ~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAH 314 (1518)
T COG4889 235 RASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAH 314 (1518)
T ss_pred eeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchh
Confidence 1 22222211111 01111 1112445679999999886532 33344579999999999
Q ss_pred ccCC------chhHHHHHh--hccccceEEEeecCC
Q 000099 1133 RMKD------RESVLARDL--DRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1133 rLKN------~~SKlskaL--k~Lks~~RLLLTGTP 1160 (2240)
|--. ..+..++.- ..+++..||.+||||
T Consensus 315 RTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATP 350 (1518)
T COG4889 315 RTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATP 350 (1518)
T ss_pred ccccceecccCcccceeecCcchhHHHHhhhcccCc
Confidence 9743 122222211 134677899999999
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.6e-13 Score=174.97 Aligned_cols=307 Identities=19% Similarity=0.254 Sum_probs=209.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLPS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw~Ps 1075 (2240)
.+-.|-|+.+++-+..=...+ ..-+||.++|-|||=+|+-.+-.. -...+.+.|+||+.+| .|..+.|...|.+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkA---V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKA---VMDGKQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHH---hcCCCeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 356688999998888655433 345999999999998876443221 2334689999999876 5577778877765
Q ss_pred CeEEE--E--ecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccc
Q 000099 1076 VSCIY--Y--VGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (2240)
Q Consensus 1076 lkVvv--y--~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~ 1151 (2240)
+-|-+ . .-+.++.+.++ .....+..||||.|+..|.++..+ .+..+|||||=||+. -+.-..|+.+++.
T Consensus 670 fPV~I~~LSRF~s~kE~~~il-~~la~G~vDIvIGTHrLL~kdv~F---kdLGLlIIDEEqRFG---Vk~KEkLK~Lr~~ 742 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEIL-KGLAEGKVDIVIGTHRLLSKDVKF---KDLGLLIIDEEQRFG---VKHKEKLKELRAN 742 (1139)
T ss_pred CCeeEEEecccCCHHHHHHHH-HHHhcCCccEEEechHhhCCCcEE---ecCCeEEEechhhcC---ccHHHHHHHHhcc
Confidence 43333 2 22334444443 357789999999999988776443 467899999999985 3444567777665
Q ss_pred -eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1152 -RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1152 -~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
..|-||||||..+|. .+|.. + +.|.-+
T Consensus 743 VDvLTLSATPIPRTL~--Msm~G-----i--------------------------------------RdlSvI------- 770 (1139)
T COG1197 743 VDVLTLSATPIPRTLN--MSLSG-----I--------------------------------------RDLSVI------- 770 (1139)
T ss_pred CcEEEeeCCCCcchHH--HHHhc-----c--------------------------------------hhhhhc-------
Confidence 588899999988754 11111 0 000000
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
.-||.....|..-..+..
T Consensus 771 --------~TPP~~R~pV~T~V~~~d------------------------------------------------------ 788 (1139)
T COG1197 771 --------ATPPEDRLPVKTFVSEYD------------------------------------------------------ 788 (1139)
T ss_pred --------cCCCCCCcceEEEEecCC------------------------------------------------------
Confidence 123322222221110000
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIV 1388 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~eEReeaIk 1388 (2240)
...+-+.|++++. .|..|-..++....+..+...|+.. ..++...||.|+..+-++++.
T Consensus 789 ------------------~~~ireAI~REl~-RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~ 849 (1139)
T COG1197 789 ------------------DLLIREAILRELL-RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVML 849 (1139)
T ss_pred ------------------hHHHHHHHHHHHh-cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHH
Confidence 0011122344444 4667777778888888888888765 567888999999999999999
Q ss_pred HHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC-CChhhHHHHhhhhhccCCcceEEEEEEe
Q 000099 1389 DFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIYME 1453 (2240)
Q Consensus 1389 ~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p-WNP~~d~QAiGRAhRIGQKKeV~VyrLv 1453 (2240)
+|.+++-+ +|+||.....|||+++|||+|+-+.+ +--++..|-.||++|-...- +.|.++
T Consensus 850 ~F~~g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~A--YAYfl~ 910 (1139)
T COG1197 850 DFYNGEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQA--YAYFLY 910 (1139)
T ss_pred HHHcCCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceE--EEEEee
Confidence 99986666 79999999999999999999999998 68999999999999976443 444443
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=148.56 Aligned_cols=166 Identities=28% Similarity=0.306 Sum_probs=117.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHHHCCC-
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHKWLPS- 1075 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~Kw~Ps- 1075 (2240)
..++++||.+++.+++... .++++..++|+|||..++.++...+.. ....++||++| ..++.+|..++..+++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~-~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKR-GKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcc-cCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3589999999999887521 788999999999999888877776653 22468999999 55789999999999876
Q ss_pred --CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCC--chhHHHHHhhcc-
Q 000099 1076 --VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRY- 1148 (2240)
Q Consensus 1076 --lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN--~~SKlskaLk~L- 1148 (2240)
.....+.+..... .. . .......+|+++|++.+...... +....|++|||||+|.+.+ ....+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~-~~-~-~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 82 GLKVVGLYGGDSKRE-QL-R-KLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred CeEEEEEeCCcchHH-HH-H-HHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 3344444433211 11 1 23334459999999999876544 4556789999999999985 333344444444
Q ss_pred ccceEEEeecCCCCCCHHHHHH
Q 000099 1149 RCQRRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1149 ks~~RLLLTGTPLQNnL~ELwS 1170 (2240)
...+++++||||..+.-...+.
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~ 180 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLEL 180 (201)
T ss_pred ccceEEEEecCCchhHHHHHHH
Confidence 5778999999997444333333
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-13 Score=175.05 Aligned_cols=118 Identities=22% Similarity=0.204 Sum_probs=105.0
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
..+++..|...|..+...+.+|||||.....++.|.++|...|+.+..+||.++..+|.++++.|+.+.. .+|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i---~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEF---DVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCc---eEEEEcC
Confidence 3567788888888888899999999999999999999999999999999999999999999999986443 3789999
Q ss_pred cccccCCCCCCCeEEEcC-----CCCChhhHHHHhhhhhccCCcceE
Q 000099 1406 AAGRGLNLQSADTVIIYD-----PDPNPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1406 AGGeGLNLQaADtVIifD-----~pWNP~~d~QAiGRAhRIGQKKeV 1447 (2240)
.+++|+|++.+++||++| .+-+...|+|++||++|.. ...|
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~G~v 546 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-NGKV 546 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-CCEE
Confidence 999999999999999999 5668899999999999974 4444
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-14 Score=147.44 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=83.4
Q ss_pred HHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCc
Q 000099 1946 VISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSH 2025 (2240)
Q Consensus 1946 vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~s 2025 (2240)
++..+..-..++.--.+++|.+.|++.+.|+||.+ |++||||.+|++||+.++|.+++||.+||+|||+||+.||+++|
T Consensus 8 ~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~~s 86 (109)
T cd05492 8 IVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRL-IHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGADS 86 (109)
T ss_pred HHHHHHhcCcccccccccccccCchhccCCCHHHH-hCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 33444444455666688999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000099 2026 EVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 2026 ev~~dA~~L~~~F~~~~ 2042 (2240)
.+|..|+.|-..-..-|
T Consensus 87 ~~~~~A~~l~~d~~~el 103 (109)
T cd05492 87 EQYDAARWLYRDTCHDL 103 (109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999876655443
|
ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-12 Score=150.33 Aligned_cols=310 Identities=17% Similarity=0.188 Sum_probs=206.3
Q ss_pred cCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC
Q 000099 996 LRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP 1074 (2240)
Q Consensus 996 L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~P 1074 (2240)
-..|+|.|+|..+-+-++..+.+....|+..-+|.|||-+....|.+.+. ..+.+.|..|. .++..-...|..-|+
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN---QGGRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh---cCCeEEEecCcccchHHHHHHHHHhhc
Confidence 34789999999999999999999999999999999999988888877765 44678888884 477777777888888
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC-chhHHHHHhhcc--ccc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRY--RCQ 1151 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN-~~SKlskaLk~L--ks~ 1151 (2240)
+..+.+.+|..+..- . ..+||+|-..+.+-. ..||+|||||.+.+-= .+-.+..+++.- ...
T Consensus 170 ~~~I~~Lyg~S~~~f---------r-~plvVaTtHQLlrFk-----~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g 234 (441)
T COG4098 170 NCDIDLLYGDSDSYF---------R-APLVVATTHQLLRFK-----QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEG 234 (441)
T ss_pred cCCeeeEecCCchhc---------c-ccEEEEehHHHHHHH-----hhccEEEEeccccccccCCHHHHHHHHHhhcccC
Confidence 888888777654321 1 345555544444332 2589999999998731 222344444432 234
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH-HHHH
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP-FMLR 1230 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP-FmLR 1230 (2240)
..|.|||||-.. +..... +.-+.+ .+-+
T Consensus 235 ~~IylTATp~k~----------------------l~r~~~-----------------------------~g~~~~~klp~ 263 (441)
T COG4098 235 ATIYLTATPTKK----------------------LERKIL-----------------------------KGNLRILKLPA 263 (441)
T ss_pred ceEEEecCChHH----------------------HHHHhh-----------------------------hCCeeEeecch
Confidence 589999999211 111000 000000 0011
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
|.-. +.||- ...+++. .+-+.+
T Consensus 264 RfH~---~pLpv--Pkf~w~~--~~~k~l--------------------------------------------------- 285 (441)
T COG4098 264 RFHG---KPLPV--PKFVWIG--NWNKKL--------------------------------------------------- 285 (441)
T ss_pred hhcC---CCCCC--CceEEec--cHHHHh---------------------------------------------------
Confidence 1110 11221 1222221 000000
Q ss_pred CCCCccccchhhHhhcccHHH-HHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-C-ceEEeecCCCCHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLW-ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-Q-LVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLe-lLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-G-iky~rLDGsTs~eEReeaI 1387 (2240)
.-.|+. .|.++|.+...+|.-+|||.....+++-+...|+.. + .....++... ..|.+.+
T Consensus 286 ---------------~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV 348 (441)
T COG4098 286 ---------------QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKV 348 (441)
T ss_pred ---------------hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHH
Confidence 011222 577888888999999999999999999999999432 2 2234455443 5799999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC--CChhhHHHHhhhhhccCCc--ceEEEEEE
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD--PNPKNEEQAVARAHRIGQK--REVKVIYM 1452 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p--WNP~~d~QAiGRAhRIGQK--KeV~VyrL 1452 (2240)
+.|+++.-+ +|++|....+|+.++.+|++|+=.-. ++-...+|--||++|--.. .+|..|.+
T Consensus 349 ~~fR~G~~~---lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 349 EAFRDGKIT---LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHHcCceE---EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 999976555 89999999999999999999886555 8999999999999996543 44555544
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-13 Score=163.53 Aligned_cols=320 Identities=21% Similarity=0.269 Sum_probs=211.6
Q ss_pred hhhHHhhhhhhccCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHH-HHhCCCCCeEEEe
Q 000099 979 YSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM-EFKGNYGPHLIIV 1057 (2240)
Q Consensus 979 y~lah~i~e~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Ll-e~kg~~GP~LIVV 1057 (2240)
|.+..+|.++...+| .|.|.+.+.-++. +...+--.-||+|||...+..+...+ ......-+.||+.
T Consensus 30 ~~v~raI~kkg~~~p--------tpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralils 97 (529)
T KOG0337|consen 30 YKVLRAIHKKGFNTP--------TPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILS 97 (529)
T ss_pred HHHHHHHHHhhcCCC--------Cchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeecc
Confidence 344455666655555 4567777766654 33334445699999988777554433 3222224789999
Q ss_pred chHHH-HH---HHHHHHHHCCCCeEE-EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEeccc
Q 000099 1058 PNAVL-VN---WKSELHKWLPSVSCI-YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDE 1130 (2240)
Q Consensus 1058 P~SLL-~Q---W~~Ef~Kw~PslkVv-vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDE 1130 (2240)
|+.-| .| ...++.++. .+++. .|.|..-+. +. .....+.||||.|+..+..... .|......|||+||
T Consensus 98 ptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~ee-qf---~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 98 PTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEE-QF---ILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDE 172 (529)
T ss_pred CcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHH-HH---HHhccCCCEEEecCceeeeeehheeccccceeeeeehh
Confidence 98754 33 334444443 45555 444443322 21 2234578999999998864321 13344678999999
Q ss_pred ccccCC--chhHHHHHhhccccc-eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhh
Q 000099 1131 AQRMKD--RESVLARDLDRYRCQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1207 (2240)
Q Consensus 1131 AHrLKN--~~SKlskaLk~Lks~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~ 1207 (2240)
++++-. ..-++.+.+.++... ..+++|||- .+.| . .|.. .|
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~l------v------------~fak--------aG--------- 216 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRDL------V------------DFAK--------AG--------- 216 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chhh------H------------HHHH--------cc---------
Confidence 999854 456778888888644 589999993 1111 1 1111 00
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhH
Q 000099 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287 (2240)
Q Consensus 1208 l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ 1287 (2240)
+..|.++| -||+.. +++.
T Consensus 217 ---------------l~~p~lVR---ldvetk------------ise~-------------------------------- 234 (529)
T KOG0337|consen 217 ---------------LVPPVLVR---LDVETK------------ISEL-------------------------------- 234 (529)
T ss_pred ---------------CCCCceEE---eehhhh------------cchh--------------------------------
Confidence 01111111 111110 0000
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc
Q 000099 1288 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (2240)
Q Consensus 1288 ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r 1367 (2240)
.+++ .+.++...|...|..++..... .++.|||+....+++++...|+..
T Consensus 235 -----------lk~~------------------f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~ 284 (529)
T KOG0337|consen 235 -----------LKVR------------------FFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDF 284 (529)
T ss_pred -----------hhhh------------------eeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhc
Confidence 0000 0112234466777777766543 568999999999999999999999
Q ss_pred CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcce
Q 000099 1368 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (2240)
Q Consensus 1368 Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKe 1446 (2240)
|+....+.|++..+.|..-+.+|+..... +|+.|+++.+|+|++--|+||+||.|-.+..+++|+||+.|.|.+..
T Consensus 285 g~~~s~iysslD~~aRk~~~~~F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~ 360 (529)
T KOG0337|consen 285 GGEGSDIYSSLDQEARKINGRDFRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGR 360 (529)
T ss_pred CCCccccccccChHhhhhccccccCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccce
Confidence 99999999999999999999999975555 89999999999999999999999999999999999999999997654
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-11 Score=160.81 Aligned_cols=420 Identities=15% Similarity=0.211 Sum_probs=235.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWLPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~Ps 1075 (2240)
..++-|+.|---|. .|-|.-..||.|||++++..+ ++....+ ..++||+|+.-|. .|...|.+|+ +
T Consensus 82 ~~ydVQliGgl~L~------~G~IaEm~TGEGKTL~a~lp~-~l~al~g--~~VhIvT~ndyLA~RD~e~m~~l~~~l-G 151 (908)
T PRK13107 82 RHFDVQLLGGMVLD------SNRIAEMRTGEGKTLTATLPA-YLNALTG--KGVHVITVNDYLARRDAENNRPLFEFL-G 151 (908)
T ss_pred CcCchHHhcchHhc------CCccccccCCCCchHHHHHHH-HHHHhcC--CCEEEEeCCHHHHHHHHHHHHHHHHhc-C
Confidence 34455888764442 355788999999999876544 3333233 3489999988663 4888888886 6
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHH----hh-----hhccccCcceEecccccccCCchhHHHHHhh
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY----DR-----SKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~k----D~-----s~L~kikWd~VIIDEAHrLKN~~SKlskaLk 1146 (2240)
++|.+..+...... .......+|+++|...|-- +. ..+-...+.++||||++.+.-.
T Consensus 152 lsv~~i~~~~~~~~-----r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD--------- 217 (908)
T PRK13107 152 LTVGINVAGLGQQE-----KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID--------- 217 (908)
T ss_pred CeEEEecCCCCHHH-----HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc---------
Confidence 66666655443211 1223467999999876622 21 1122257889999999987532
Q ss_pred ccccceEEEeecCCCCCCHHHHHHHHhhhcccccCC----hHHHHh--hhcCCcccCCCCCCCChhh-------------
Q 000099 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN----RKAFHD--WFSQPFQKEGPTHNADDDW------------- 1207 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S----~~sF~e--~F~kPf~~~g~~~~~e~d~------------- 1207 (2240)
.+..-|++||.+ ... .++|..++.+...+... .+.|.. .|... .......-.+...
T Consensus 218 --EArtPLIISg~~-~~~-~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~id-ek~~~v~LTe~G~~~~e~~l~~~~~~ 292 (908)
T PRK13107 218 --EARTPLIISGAA-EDS-SELYIKINTLIPNLIRQDKEDTEEYVGEGDYSID-EKAKQVHFTERGQEKVENLLIERGML 292 (908)
T ss_pred --cCCCceeecCCC-ccc-hHHHHHHHHHHHHHHhhhhccccccCCCCCEEEe-cCCCeeeechHHHHHHHHHHHhCCcc
Confidence 233457888854 322 55665554332211100 000000 00000 0000000000000
Q ss_pred -----HHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchh
Q 000099 1208 -----LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPED 1275 (2240)
Q Consensus 1208 -----l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~ 1275 (2240)
+........++.+...|+.+.+...-.+.. +-+....+| -..| .+.--+.+.+.....+.+....
T Consensus 293 ~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYi--V~dg~V~IV-De~TGRim~grrwsdGLHQaIEaKE~v~I~~e~ 369 (908)
T PRK13107 293 AEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYI--VQDNEVIIV-DEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNEN 369 (908)
T ss_pred cCcccccCchhhHHHHHHHHHHHHHHHHhcCCceE--EECCEEEEE-ECCCCCCCCCCccchHHHHHHHHhcCCCCCCCc
Confidence 000001112333444444443322111111 111111111 1111 2233344444333222222111
Q ss_pred HHhhhhcChhhH--HHHHHH-------HHHHHHHHHHHcCCCCCCCCCccc-----cchhhHhhcccHHHHHHHHHHHHH
Q 000099 1276 EKRRVQKNPIYQ--AKVYKT-------LNNRCMELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQ 1341 (2240)
Q Consensus 1276 e~~~l~~~~~~~--ak~~~s-------L~nilmqLRKICNHP~L~~p~~~~-----ls~d~LirsSGKLelLdrIL~kL~ 1341 (2240)
. .+..- .++ -+.|.. .......|.++-+.+.+..|.... ...........|+..+..-+.++.
T Consensus 370 ~--t~AsI-T~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~ 446 (908)
T PRK13107 370 Q--TLASI-TFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCR 446 (908)
T ss_pred e--eeeee-hHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHH
Confidence 0 00000 000 000111 111233566665555544443221 111122334578888888888888
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCC------
Q 000099 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS------ 1415 (2240)
Q Consensus 1342 atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQa------ 1415 (2240)
+.|..|||||......+.|..+|...|+++..|++.....+|..+.+.|+.+. ++|+|+.+|+|+|+.=
T Consensus 447 ~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATnmAGRGTDIkLggn~~~ 521 (908)
T PRK13107 447 ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATNMAGRGTDIVLGGNWNM 521 (908)
T ss_pred HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecCCcCCCcceecCCchHH
Confidence 99999999999999999999999999999999999999999999999998633 8999999999999772
Q ss_pred -------------------------------CCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1416 -------------------------------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1416 -------------------------------ADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
-=+||.-..+-|...+.|..||++|-|.......| +++|+.+++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~--lSlED~L~r 596 (908)
T PRK13107 522 EIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFY--LSMEDSLMR 596 (908)
T ss_pred hhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEE--EEeCcHHHH
Confidence 23789999999999999999999999988776554 344555543
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-13 Score=137.10 Aligned_cols=136 Identities=24% Similarity=0.311 Sum_probs=100.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-HHHHHHHHHCC-CCeEEEEecchhhHhHHHHHHHhh
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-NWKSELHKWLP-SVSCIYYVGAKDQRSRLFSQEVAA 1098 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-QW~~Ef~Kw~P-slkVvvy~GskdeRk~l~~qei~~ 1098 (2240)
+++|.+++|+|||.+++.++..+... ...+++||+||...+. +|...+..|.. .+.+.++.+........ ....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 77 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLLS 77 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHhc
Confidence 67999999999999999999888764 4567999999988655 45666777765 46666666655443322 2335
Q ss_pred cCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCchhHHH---HHhhccccceEEEeecCC
Q 000099 1099 LKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRESVLA---RDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1099 ~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~~SKls---kaLk~Lks~~RLLLTGTP 1160 (2240)
...+|+|+||+.+.+.... +....|++|||||+|.+.+...... .........++++|||||
T Consensus 78 ~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 78 GKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 6789999999988766433 2345799999999999987655443 333345777899999998
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=175.68 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=84.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCce---EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLV---YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGik---y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
....+|||+.....++.+.+.|...++. ++.|+|+++.++|..+++.+ ..+-|||+|+++++||+++++++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 3468999999999999999999988765 66799999999999887653 224479999999999999999999
Q ss_pred EEcC---------------CCC---ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1420 IIYD---------------PDP---NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1420 IifD---------------~pW---NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
|.++ .+. +-..+.||.||++|.+ +-.+|+|++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyt 409 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYS 409 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCC
Confidence 9985 232 3368999999999984 344556655
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.5e-12 Score=172.99 Aligned_cols=311 Identities=18% Similarity=0.177 Sum_probs=218.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Pslk 1077 (2240)
...||-|.++|.-.+. +..+++-..||.||.+..-.... -..|-+|||.|+ +|+.....-+.+ .++.
T Consensus 263 ~~FR~~Q~eaI~~~l~----Gkd~fvlmpTG~GKSLCYQlPA~------l~~gitvVISPL~SLm~DQv~~L~~--~~I~ 330 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLS----GKDCFVLMPTGGGKSLCYQLPAL------LLGGVTVVISPLISLMQDQVTHLSK--KGIP 330 (941)
T ss_pred ccCChhHHHHHHHHHc----CCceEEEeecCCceeeEeecccc------ccCCceEEeccHHHHHHHHHHhhhh--cCcc
Confidence 3689999999986655 78889999999999977633221 123478999995 576666655533 3455
Q ss_pred EEEEecchhh--HhHHHHHHHhhc--CCcEEEEcHHHHHHhhhhc----cccC---cceEecccccccCC-------chh
Q 000099 1078 CIYYVGAKDQ--RSRLFSQEVAAL--KFNVLVTTYEFIMYDRSKL----SKVD---WKYIIIDEAQRMKD-------RES 1139 (2240)
Q Consensus 1078 Vvvy~Gskde--Rk~l~~qei~~~--~fdVVITTYE~L~kD~s~L----~kik---Wd~VIIDEAHrLKN-------~~S 1139 (2240)
...+.+.... +..++ +.+..+ ..+|+-.|+|.+......+ .... ..++||||||.+.. ...
T Consensus 331 a~~L~s~q~~~~~~~i~-q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk 409 (941)
T KOG0351|consen 331 ACFLSSIQTAAERLAIL-QKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYK 409 (941)
T ss_pred eeeccccccHHHHHHHH-HHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHH
Confidence 5556555433 33333 345555 6889999999997653221 1122 68999999998753 222
Q ss_pred HHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000099 1140 VLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219 (2240)
Q Consensus 1140 KlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~R 1219 (2240)
++......+..--.|+||||-...--.|+...|++..|.+|.+ -|+.+
T Consensus 410 ~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~------sfnR~-------------------------- 457 (941)
T KOG0351|consen 410 RLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS------SFNRP-------------------------- 457 (941)
T ss_pred HHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc------cCCCC--------------------------
Confidence 3333333455556899999988788888888888877765432 12211
Q ss_pred HHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000099 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (2240)
Q Consensus 1220 LhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilm 1299 (2240)
....-|.-..+ . ..+...+.
T Consensus 458 -----------------------NL~yeV~~k~~--~-----------------------------------~~~~~~~~ 477 (941)
T KOG0351|consen 458 -----------------------NLKYEVSPKTD--K-----------------------------------DALLDILE 477 (941)
T ss_pred -----------------------CceEEEEeccC--c-----------------------------------cchHHHHH
Confidence 00011111000 0 00000011
Q ss_pred HHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCC
Q 000099 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379 (2240)
Q Consensus 1300 qLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs 1379 (2240)
.+ +....+...||||..+..++.+...|...|+....+|.+++
T Consensus 478 ~~-------------------------------------~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~ 520 (941)
T KOG0351|consen 478 ES-------------------------------------KLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLP 520 (941)
T ss_pred Hh-------------------------------------hhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCC
Confidence 11 11223567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1380 ~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
..+|..+-..|..... .+++.|=|.|-|||-.++..||+|..|-+-.-|.|-.|||+|-|+...+..|+-..
T Consensus 521 ~~~R~~Vq~~w~~~~~---~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 521 PKERETVQKAWMSDKI---RVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred HHHHHHHHHHHhcCCC---eEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 9999999999997553 36888999999999999999999999999999999999999999998888777544
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-13 Score=132.41 Aligned_cols=78 Identities=32% Similarity=0.543 Sum_probs=73.8
Q ss_pred HHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhcc
Q 000099 1362 EYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1362 d~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRI 1441 (2240)
.+|+..++.+..+||.++.++|..+++.|+.++.. +|++|.++++|||++.+++||+||++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 36889999999999999999999999999986664 899999999999999999999999999999999999999998
Q ss_pred C
Q 000099 1442 G 1442 (2240)
Q Consensus 1442 G 1442 (2240)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-12 Score=157.06 Aligned_cols=312 Identities=20% Similarity=0.211 Sum_probs=202.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHH-HHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCC--C
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQV-MALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLP--S 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQA-IALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~Kw~P--s 1075 (2240)
+|.|-|.-+|..-+ -++.|-++...|++|||+++ +|-|..++ ...+.+|++||.-.|.| =.++|.+.+. +
T Consensus 216 eLlPVQ~laVe~GL---LeG~nllVVSaTasGKTLIgElAGi~~~l---~~g~KmlfLvPLVALANQKy~dF~~rYs~Lg 289 (830)
T COG1202 216 ELLPVQVLAVEAGL---LEGENLLVVSATASGKTLIGELAGIPRLL---SGGKKMLFLVPLVALANQKYEDFKERYSKLG 289 (830)
T ss_pred eecchhhhhhhhcc---ccCCceEEEeccCCCcchHHHhhCcHHHH---hCCCeEEEEehhHHhhcchHHHHHHHhhccc
Confidence 79999999986432 24677799999999999875 23344443 34578999999876655 4567877664 3
Q ss_pred CeEEEEecchhhHhHHH-HHHHhhcCCcEEEEcHHHHHHhhhh-ccccCcceEecccccccCC--chhHHH---HHhhcc
Q 000099 1076 VSCIYYVGAKDQRSRLF-SQEVAALKFNVLVTTYEFIMYDRSK-LSKVDWKYIIIDEAQRMKD--RESVLA---RDLDRY 1148 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~-~qei~~~~fdVVITTYE~L~kD~s~-L~kikWd~VIIDEAHrLKN--~~SKls---kaLk~L 1148 (2240)
+++.+-.|....+..-- .......+.||+|.||+-+-.-... -.--+...|||||.|.+.. ....+- ..|+.+
T Consensus 290 lkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l 369 (830)
T COG1202 290 LKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYL 369 (830)
T ss_pred ceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHHh
Confidence 56666677654432210 0012356789999999876322111 1123678999999999975 223322 223333
Q ss_pred -ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1149 -RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1149 -ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
.....|.||||- .|+.||..-|+.-+. .|
T Consensus 370 ~~~AQ~i~LSATV--gNp~elA~~l~a~lV-~y----------------------------------------------- 399 (830)
T COG1202 370 FPGAQFIYLSATV--GNPEELAKKLGAKLV-LY----------------------------------------------- 399 (830)
T ss_pred CCCCeEEEEEeec--CChHHHHHHhCCeeE-ee-----------------------------------------------
Confidence 346789999993 555565544331100 00
Q ss_pred HHHhhhhhhccCCC-CceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1228 MLRRRVEDVEGSLP-PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1228 mLRRlKkDVekdLP-~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
..-| +...+.++|.-...
T Consensus 400 ----------~~RPVplErHlvf~~~e~e--------------------------------------------------- 418 (830)
T COG1202 400 ----------DERPVPLERHLVFARNESE--------------------------------------------------- 418 (830)
T ss_pred ----------cCCCCChhHeeeeecCchH---------------------------------------------------
Confidence 0011 11223333321111
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHH----HhcC--CeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCH
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL----QRTG--HRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSL 1380 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL----~atG--hKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~ 1380 (2240)
|..++.+++..- ...| ...|||+..+.-+..|+++|..+|++..-+|++++.
T Consensus 419 ----------------------K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y 476 (830)
T COG1202 419 ----------------------KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPY 476 (830)
T ss_pred ----------------------HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcH
Confidence 111111111110 1123 358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE----cCCCC-ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YDPDP-NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1381 eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi----fD~pW-NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.+|..+-..|.+.+-. .+++|.|.+-|+|+++.. ||| +...| +|..|.|..|||+|.+=...-.||-++.
T Consensus 477 ~eRk~vE~~F~~q~l~---~VVTTAAL~AGVDFPASQ-VIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllve 551 (830)
T COG1202 477 KERKSVERAFAAQELA---AVVTTAALAAGVDFPASQ-VIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVE 551 (830)
T ss_pred HHHHHHHHHHhcCCcc---eEeehhhhhcCCCCchHH-HHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEec
Confidence 9999999999976665 689999999999999643 433 34455 9999999999999988665555665543
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-12 Score=165.25 Aligned_cols=113 Identities=22% Similarity=0.243 Sum_probs=102.2
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
..+++..|...|..+...+.+|||||.....++.|.++|...|+++..+||.++..+|..+++.|..+.. .+|++|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i---~vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEF---DVLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCc---eEEEEeC
Confidence 3467778888888888899999999999999999999999999999999999999999999999986443 3689999
Q ss_pred cccccCCCCCCCeEEEcCC-----CCChhhHHHHhhhhhcc
Q 000099 1406 AAGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1406 AGGeGLNLQaADtVIifD~-----pWNP~~d~QAiGRAhRI 1441 (2240)
.+++|++++.+++||++|. +-++..|+|++||++|-
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~ 545 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 545 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC
Confidence 9999999999999999997 46899999999999994
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-10 Score=152.76 Aligned_cols=128 Identities=19% Similarity=0.264 Sum_probs=110.5
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000099 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrA 1406 (2240)
..|+..|...+..+...+..|||||.++...+.|..+|...|+++..|++ +..+|+..|..|....+. ++|+|+.
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~---VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA---VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe---EEEeccC
Confidence 46889999999888889999999999999999999999999999999997 678999999999865444 8999999
Q ss_pred ccccCCCCCCC--------eEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1407 AGRGLNLQSAD--------TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1407 GGeGLNLQaAD--------tVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
+|+|+|+.-.+ +||.++.+-+...|.|++||++|.|....... |++.++.+++
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~f--fvSleD~Lmr 716 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVF--YVSLEDELMR 716 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEE--EechhHHHHH
Confidence 99999999433 44999999999999999999999998877633 3455666654
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.4e-12 Score=171.57 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=85.1
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcC---ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rG---iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
....||||+.....++.+.+.|...+ +.++.++|.++.++|.++++.+. .+-|||||+++++||++.++++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~-----~rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS-----GRRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC-----CceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 45788999999999998855432 23479999999999999999999
Q ss_pred EEcCCC-----------------C-ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1420 IIYDPD-----------------P-NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1420 IifD~p-----------------W-NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
|.++.. | +-..+.||.||++|.| +-.+|+|++
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyt 402 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYS 402 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecC
Confidence 998732 2 4568999999999998 444567765
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-10 Score=151.00 Aligned_cols=157 Identities=16% Similarity=0.231 Sum_probs=114.2
Q ss_pred HHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEE
Q 000099 1298 CMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYR 1372 (2240)
Q Consensus 1298 lmqLRKICNHP~L~~p~~~~l-----s~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~ 1372 (2240)
...+.++-+.+.+..|..... ..........|+..+..-+..+.+.|.-|||-|.+....+.|...|...|+++.
T Consensus 517 ~~Ef~~iY~l~v~~iPt~kp~~r~d~~d~iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~ 596 (970)
T PRK12899 517 SREFKEIYNLYVLQVPTFKPCLRIDHNDEFYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHT 596 (970)
T ss_pred HHHHHHHhCCCEEECCCCCCceeeeCCCcEecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcce
Confidence 345666666655544443221 111222334788888888888888999999999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCC--------CeEEEcCCCCChhhHHHHhhhhhccCCc
Q 000099 1373 RIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1373 rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaA--------DtVIifD~pWNP~~d~QAiGRAhRIGQK 1444 (2240)
.|+.... +.-..+|.+- +. .-.+.|+|..+|+|.|+.-. =+||.-..+-|...+.|..||++|-|..
T Consensus 597 vLNak~~-~~Ea~iia~A--G~--~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdp 671 (970)
T PRK12899 597 VLNAKNH-AQEAEIIAGA--GK--LGAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDP 671 (970)
T ss_pred ecccchh-hhHHHHHHhc--CC--CCcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCC
Confidence 9988633 2223455432 22 23488999999999997643 3789999999999999999999999998
Q ss_pred ceEEEEEEehhHHHhhh
Q 000099 1445 REVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1445 KeV~VyrLvTVEEkI~s 1461 (2240)
.....| +++++.++.
T Consensus 672 Gss~f~--lSlEDdL~~ 686 (970)
T PRK12899 672 GAAKFF--LSFEDRLMR 686 (970)
T ss_pred CceeEE--EEcchHHHH
Confidence 876554 345555554
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-11 Score=155.21 Aligned_cols=300 Identities=19% Similarity=0.181 Sum_probs=180.5
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-------CCCCCeEEEechH-HHHHHHHHHHHHCC--CCeEEEEec
Q 000099 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-------GNYGPHLIIVPNA-VLVNWKSELHKWLP--SVSCIYYVG 1083 (2240)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-------g~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--slkVvvy~G 1083 (2240)
..|+.+.|.|+|.+||+|||..++..|+.++..+ .+.-.++.|+|.. |..--.+.|.+-+. ++.|.-+.|
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTG 200 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTG 200 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecC
Confidence 3567889999999999999999998888887641 1234789999965 44444444444444 688888998
Q ss_pred chhhHhHHHHHHHhhcCCcEEEEcHHHHHH-------hhhhccccCcceEecccccccCCch-----hHHHHHhhcc---
Q 000099 1084 AKDQRSRLFSQEVAALKFNVLVTTYEFIMY-------DRSKLSKVDWKYIIIDEAQRMKDRE-----SVLARDLDRY--- 1148 (2240)
Q Consensus 1084 skdeRk~l~~qei~~~~fdVVITTYE~L~k-------D~s~L~kikWd~VIIDEAHrLKN~~-----SKlskaLk~L--- 1148 (2240)
....-+ .+ ..+.+|+|||+|..-- +...+. ...+|||||.|-+.... +.+++.++..
T Consensus 201 D~ql~~----te--i~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vess 272 (1230)
T KOG0952|consen 201 DTQLTK----TE--IADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESS 272 (1230)
T ss_pred cchhhH----HH--HHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhh
Confidence 754322 12 4567999999987521 111222 46799999999997643 3444555333
Q ss_pred -ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1149 -RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1149 -ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
..-+.++||||- -|+.|+. .||....+...-.|...| +|.
T Consensus 273 qs~IRivgLSATl--PN~eDvA---~fL~vn~~~glfsFd~~y----------------------------------RPv 313 (1230)
T KOG0952|consen 273 QSMIRIVGLSATL--PNYEDVA---RFLRVNPYAGLFSFDQRY----------------------------------RPV 313 (1230)
T ss_pred hhheEEEEeeccC--CCHHHHH---HHhcCCCccceeeecccc----------------------------------ccc
Confidence 234678999993 2344443 344333222222333222 111
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccC--HHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMS--AIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC 1305 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS--~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC 1305 (2240)
-|+ ..++-++-. ..+....+ .
T Consensus 314 pL~--------------~~~iG~k~~~~~~~~~~~d-----------------------------------------~-- 336 (1230)
T KOG0952|consen 314 PLT--------------QGFIGIKGKKNRQQKKNID-----------------------------------------E-- 336 (1230)
T ss_pred cee--------------eeEEeeecccchhhhhhHH-----------------------------------------H--
Confidence 110 011111100 00000000 0
Q ss_pred CCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc----Cce-----------
Q 000099 1306 NHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR----QLV----------- 1370 (2240)
Q Consensus 1306 NHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r----Gik----------- 1370 (2240)
.+.++ +.++...||.|+||+..+...--.+..|..+ |..
T Consensus 337 -------------------------~~~~k-v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~ 390 (1230)
T KOG0952|consen 337 -------------------------VCYDK-VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQ 390 (1230)
T ss_pred -------------------------HHHHH-HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHH
Confidence 01112 2234457899999998877655555555433 222
Q ss_pred --------EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhh----------HH
Q 000099 1371 --------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKN----------EE 1432 (2240)
Q Consensus 1371 --------y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~----------d~ 1432 (2240)
...-|.++...+|.-+-+.|..+.-+ +|+||...+.|+||++--++|-=..-|++.. .+
T Consensus 391 l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVl 467 (1230)
T KOG0952|consen 391 LKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVL 467 (1230)
T ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHH
Confidence 12235567778888888889865444 6999999999999997666665555566654 68
Q ss_pred HHhhhhhccCCcce
Q 000099 1433 QAVARAHRIGQKRE 1446 (2240)
Q Consensus 1433 QAiGRAhRIGQKKe 1446 (2240)
|-.|||+|..=.+.
T Consensus 468 QifGRAGRPqFd~~ 481 (1230)
T KOG0952|consen 468 QIFGRAGRPQFDSS 481 (1230)
T ss_pred HHHhccCCCCCCCC
Confidence 99999999865444
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-11 Score=143.33 Aligned_cols=322 Identities=16% Similarity=0.149 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEE
Q 000099 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYY 1081 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkVvvy 1081 (2240)
+.|..++.-++. .+....++++||.||++..-... |+. .|-++||.|.- |+....+-+.+.--....+--
T Consensus 23 ~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPa--L~~----~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPA--LVH----GGITIVISPLIALIKDQIDHLKRLKVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchH--HHh----CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcc
Confidence 578889887775 45567999999999997764332 222 23678888865 566666666654211111111
Q ss_pred ecchhhHhHHHHHH-HhhcCCcEEEEcHHHHHHh-----hhhc-cccCcceEecccccccCC------chhHHHHHhhc-
Q 000099 1082 VGAKDQRSRLFSQE-VAALKFNVLVTTYEFIMYD-----RSKL-SKVDWKYIIIDEAQRMKD------RESVLARDLDR- 1147 (2240)
Q Consensus 1082 ~GskdeRk~l~~qe-i~~~~fdVVITTYE~L~kD-----~s~L-~kikWd~VIIDEAHrLKN------~~SKlskaLk~- 1147 (2240)
.-+..+|.+++... .......++-+|++....+ ...| ......|+||||||.+-- +.....-.|+.
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 22345666665432 2234556888888876543 2223 334578999999998732 22222222332
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhccc-ccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPE-VFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEP 1226 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~-iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrP 1226 (2240)
+..--.++||||--..--+|++..|.+-.|- +|.+ ..|...
T Consensus 174 ~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT-P~FR~N------------------------------------- 215 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT-PTFRDN------------------------------------- 215 (641)
T ss_pred CCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC-cchhhh-------------------------------------
Confidence 2233468899998777778888888766552 2211 112110
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
-+|+....+. ...-+.+...-.+++..
T Consensus 216 -------------------------------LFYD~~~K~~----------------------I~D~~~~LaDF~~~~LG 242 (641)
T KOG0352|consen 216 -------------------------------LFYDNHMKSF----------------------ITDCLTVLADFSSSNLG 242 (641)
T ss_pred -------------------------------hhHHHHHHHH----------------------hhhHhHhHHHHHHHhcC
Confidence 0111110000 00000000001111111
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHH
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReea 1386 (2240)
.|--+ .+.. +.....-||||..++.++.|+-.|..+||....+|.+.+..+|.++
T Consensus 243 ~~~~~----~~~~---------------------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeV 297 (641)
T KOG0352|consen 243 KHEKA----SQNK---------------------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEV 297 (641)
T ss_pred Chhhh----hcCC---------------------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHH
Confidence 11000 0000 0012357999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
-+.|-.++-+ +|+.|-..|.|+|-+++..||+.|++-|..-|.|--||++|-|-..-|+.||-
T Consensus 298 Qe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYs 360 (641)
T KOG0352|consen 298 QEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYS 360 (641)
T ss_pred HHHHhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeec
Confidence 9999876666 68899999999999999999999999999999999999999998888999885
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-11 Score=131.84 Aligned_cols=156 Identities=23% Similarity=0.287 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--CeEE
Q 000099 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--VSCI 1079 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps--lkVv 1079 (2240)
|+|.+++.-+.. +.+.|+..++|+|||..++..+...+... ....+||+||.. ++.+-..++.+++.. +.+.
T Consensus 2 ~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~ 76 (169)
T PF00270_consen 2 PLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVV 76 (169)
T ss_dssp HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEE
T ss_pred HHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeecccccccccccccccccccccccc
Confidence 799999987774 67789999999999999987776655433 445899999965 778888899999864 6777
Q ss_pred EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCc--hhHHHHHhhcc---ccce
Q 000099 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY---RCQR 1152 (2240)
Q Consensus 1080 vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~--~SKlskaLk~L---ks~~ 1152 (2240)
.++|........ ........+|+|+|++.+...... +.-...++|||||+|.+... .......+..+ ...+
T Consensus 77 ~~~~~~~~~~~~--~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 77 LLHGGQSISEDQ--REVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EESTTSCHHHHH--HHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccc--cccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 777755422111 112245789999999999876543 22234899999999999652 22333333333 3456
Q ss_pred EEEeecCCCCCCHH
Q 000099 1153 RLLLTGTPLQNDLK 1166 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ 1166 (2240)
.+++||||- .++.
T Consensus 155 ~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 155 IILLSATLP-SNVE 167 (169)
T ss_dssp EEEEESSST-HHHH
T ss_pred EEEEeeCCC-hhHh
Confidence 999999996 4444
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-12 Score=121.04 Aligned_cols=81 Identities=36% Similarity=0.461 Sum_probs=75.7
Q ss_pred HHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhh
Q 000099 1359 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARA 1438 (2240)
Q Consensus 1359 iLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRA 1438 (2240)
.|.++|...++.+..++|.++.++|..+++.|+.++. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 5678888889999999999999999999999997554 5899999999999999999999999999999999999999
Q ss_pred hccC
Q 000099 1439 HRIG 1442 (2240)
Q Consensus 1439 hRIG 1442 (2240)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.30 E-value=4e-11 Score=134.22 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=109.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh--CCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK--GNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k--g~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-- 1074 (2240)
.+++||.+++..+.. +.+.|++.++|+|||+.++..+...+... .....+|||||.. ++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999988876 77899999999999998666554444433 3445789999966 77889998888864
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhccc-
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR- 1149 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lk- 1149 (2240)
++.+..++|........ .......+|+|+|.+.+.... ..+.-..+++|||||+|.+.+.. ..+...+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~ 173 (203)
T cd00268 97 NLKVVVIYGGTSIDKQI---RKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK 173 (203)
T ss_pred CceEEEEECCCCHHHHH---HHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc
Confidence 56777788766543322 122357899999998876532 12223467899999999986543 12223333444
Q ss_pred cceEEEeecCCC
Q 000099 1150 CQRRLLLTGTPL 1161 (2240)
Q Consensus 1150 s~~RLLLTGTPL 1161 (2240)
....+++||||-
T Consensus 174 ~~~~~~~SAT~~ 185 (203)
T cd00268 174 DRQTLLFSATMP 185 (203)
T ss_pred ccEEEEEeccCC
Confidence 456899999985
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-10 Score=147.33 Aligned_cols=327 Identities=17% Similarity=0.131 Sum_probs=190.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHH-HHHHHHHHHHHCCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAV-LVNWKSELHKWLPSV 1076 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~-kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~Psl 1076 (2240)
-..+++|..++++.......+..++|..+||.|||..++.+..++... .....+++.|.|..+ +..-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 356899999999999877766578999999999999999888888765 335567888889775 555677788777554
Q ss_pred eEEEE--ecchhhHhHHHHHH-----------HhhcCCcEEEEcHHHHHHh------hhhccccCcceEecccccccCCc
Q 000099 1077 SCIYY--VGAKDQRSRLFSQE-----------VAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKDR 1137 (2240)
Q Consensus 1077 kVvvy--~GskdeRk~l~~qe-----------i~~~~fdVVITTYE~L~kD------~s~L~kikWd~VIIDEAHrLKN~ 1137 (2240)
.+... +|.....-...... ....-+.+.+++...+... ...+..+-..+||+||+|-+-..
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 44333 55443321111100 0011122222222222211 01133345678999999998654
Q ss_pred -hhHH-HHHhhcc--ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHH
Q 000099 1138 -ESVL-ARDLDRY--RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213 (2240)
Q Consensus 1138 -~SKl-skaLk~L--ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~ 1213 (2240)
.... ...+..+ .....|++|||+ | ..|.+.+...+...+.
T Consensus 354 ~~~~~l~~~i~~l~~~g~~ill~SATl----------------P------~~~~~~l~~~~~~~~~-------------- 397 (733)
T COG1203 354 TMLAALLALLEALAEAGVPVLLMSATL----------------P------PFLKEKLKKALGKGRE-------------- 397 (733)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEecCC----------------C------HHHHHHHHHHHhcccc--------------
Confidence 2222 2222233 245689999996 1 1111111100000000
Q ss_pred HHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHH
Q 000099 1214 VIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKT 1293 (2240)
Q Consensus 1214 ~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~s 1293 (2240)
.+ ...+ .|+
T Consensus 398 ---------------------~~---~~~~-----~~~------------------------------------------ 406 (733)
T COG1203 398 ---------------------VV---ENAK-----FCP------------------------------------------ 406 (733)
T ss_pred ---------------------ee---cccc-----ccc------------------------------------------
Confidence 00 0000 000
Q ss_pred HHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEe
Q 000099 1294 LNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (2240)
Q Consensus 1294 L~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~r 1373 (2240)
.++.+.+......+... ... ..+..++..-...+.+|+|-|+.+..+..+.+.|+..+.+++.
T Consensus 407 ----------~~~e~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~L 469 (733)
T COG1203 407 ----------KEDEPGLKRKERVDVED------GPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLL 469 (733)
T ss_pred ----------cccccccccccchhhhh------hhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEE
Confidence 00000000000000000 000 1112222333457899999999999999999999999888999
Q ss_pred ecCCCCHHHHHHHHHHHhcC-CCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccC--CcceEEEE
Q 000099 1374 IDGTTSLEDRESAIVDFNSH-DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG--QKREVKVI 1450 (2240)
Q Consensus 1374 LDGsTs~eEReeaIk~FNs~-Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIG--QKKeV~Vy 1450 (2240)
||+..+..+|.+.++.+..- ..+-..|+|+|.+...|||+. .|.+|- -.--....+||.||++|-| ....+.|+
T Consensus 470 lHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 470 LHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred EecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 99999999999988865531 111224799999999999987 666663 2223566889999999999 45556665
Q ss_pred EE
Q 000099 1451 YM 1452 (2240)
Q Consensus 1451 rL 1452 (2240)
..
T Consensus 547 ~~ 548 (733)
T COG1203 547 ND 548 (733)
T ss_pred ec
Confidence 44
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=135.55 Aligned_cols=313 Identities=18% Similarity=0.149 Sum_probs=215.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Pslk 1077 (2240)
.+.||.|+++++-... +...+|...+|-||++..-...+ . ..|-.|||||. +|+......+....-+..
T Consensus 93 ekfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlpal--~----adg~alvi~plislmedqil~lkqlgi~as 162 (695)
T KOG0353|consen 93 EKFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLPAL--C----ADGFALVICPLISLMEDQILQLKQLGIDAS 162 (695)
T ss_pred HhcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhhHH--h----cCCceEeechhHHHHHHHHHHHHHhCcchh
Confidence 3799999999988776 77889999999999976543321 1 24678999996 577777777776643333
Q ss_pred EEEEecchhhHhHHHHHHH--hhcCCcEEEEcHHHHHHhhhh-------ccccCcceEecccccccCC------chhHHH
Q 000099 1078 CIYYVGAKDQRSRLFSQEV--AALKFNVLVTTYEFIMYDRSK-------LSKVDWKYIIIDEAQRMKD------RESVLA 1142 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei--~~~~fdVVITTYE~L~kD~s~-------L~kikWd~VIIDEAHrLKN------~~SKls 1142 (2240)
.+--..++.+.++. ...+ ....|.++..|++.+.+.... |....|.+|.|||.|.+.. +..+..
T Consensus 163 ~lnansske~~k~v-~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l 241 (695)
T KOG0353|consen 163 MLNANSSKEEAKRV-EAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKAL 241 (695)
T ss_pred hccCcccHHHHHHH-HHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHH
Confidence 33333334333332 2222 245688999999988765432 3444789999999998742 333444
Q ss_pred HHhh-ccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000099 1143 RDLD-RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (2240)
Q Consensus 1143 kaLk-~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLh 1221 (2240)
-.|+ .|+..-.|+||||-..+-+.|.-.+|.+-. .-.|..-|+.|-...
T Consensus 242 ~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~------~~tf~a~fnr~nl~y------------------------ 291 (695)
T KOG0353|consen 242 GILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA------AFTFRAGFNRPNLKY------------------------ 291 (695)
T ss_pred HHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh------hheeecccCCCCcee------------------------
Confidence 4444 577778999999998888887766655321 112333333331111
Q ss_pred HHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1222 klLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
.++.-+-+
T Consensus 292 ------------------------ev~qkp~n------------------------------------------------ 299 (695)
T KOG0353|consen 292 ------------------------EVRQKPGN------------------------------------------------ 299 (695)
T ss_pred ------------------------EeeeCCCC------------------------------------------------
Confidence 00000000
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHH--HhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCC
Q 000099 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKL--QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTS 1379 (2240)
Q Consensus 1302 RKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL--~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs 1379 (2240)
--+++..|..-+ .-.|..-||||-...-++-+...|+..||....+|..+.
T Consensus 300 ---------------------------~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~le 352 (695)
T KOG0353|consen 300 ---------------------------EDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLE 352 (695)
T ss_pred ---------------------------hHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccC
Confidence 000111111111 113667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHH--------------------------
Q 000099 1380 LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQ-------------------------- 1433 (2240)
Q Consensus 1380 ~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~Q-------------------------- 1433 (2240)
+++|..+-..|-.+... +++.|-+.|.|||-+++..||+-..+-+...|.|
T Consensus 353 p~dks~~hq~w~a~eiq---vivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqini 429 (695)
T KOG0353|consen 353 PEDKSGAHQGWIAGEIQ---VIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINI 429 (695)
T ss_pred ccccccccccccccceE---EEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeeh
Confidence 99998888888764443 5788899999999999999999999999999999
Q ss_pred -----------------HhhhhhccCCcceEEEEEEeh
Q 000099 1434 -----------------AVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1434 -----------------AiGRAhRIGQKKeV~VyrLvT 1454 (2240)
--||++|-|++-+|.+||-.+
T Consensus 430 levctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 430 LEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred hhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 458888999998887776544
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-08 Score=132.57 Aligned_cols=416 Identities=16% Similarity=0.134 Sum_probs=228.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH----HHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN----WKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q----W~~Ef~Kw~ 1073 (2240)
|...++-|+.|..-|+. |.|.-..||-|||+++...+. +.... ...+.||+|+..|.. |...+.+|+
T Consensus 76 g~r~ydvQlig~l~Ll~------G~VaEM~TGEGKTLvA~l~a~-l~AL~--G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 76 GLRPFDVQLLGALRLLA------GDVIEMATGEGKTLAGAIAAA-GYALQ--GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCCcchHHHHHHHHHhC------CCcccccCCCCHHHHHHHHHH-HHHHc--CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 43455569998876653 457778999999999865444 33222 346888999987643 666666665
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHH-----HHh----hhhccccCcceEecccccccCCchhHHHHH
Q 000099 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI-----MYD----RSKLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (2240)
Q Consensus 1074 PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L-----~kD----~s~L~kikWd~VIIDEAHrLKN~~SKlska 1144 (2240)
++++.+..+......+ ......+|+-+|-.-| +.. ........+.++||||++-+.=
T Consensus 147 -GLsvg~i~~~~~~~er-----r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI-------- 212 (764)
T PRK12326 147 -GLTVGWITEESTPEER-----RAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV-------- 212 (764)
T ss_pred -CCEEEEECCCCCHHHH-----HHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee--------
Confidence 5677666554322211 1123567777775433 222 1222334789999999997741
Q ss_pred hhccccceEEEeecCCC-CCCHHHHHHHHhhhcccc-cC----------Ch---HHHHhhhcCCcccCCCCCCCChhhHH
Q 000099 1145 LDRYRCQRRLLLTGTPL-QNDLKELWSLLNLLLPEV-FD----------NR---KAFHDWFSQPFQKEGPTHNADDDWLE 1209 (2240)
Q Consensus 1145 Lk~Lks~~RLLLTGTPL-QNnL~ELwSLLnFLlP~i-F~----------S~---~sF~e~F~kPf~~~g~~~~~e~d~l~ 1209 (2240)
. .+..-|++||.+- .+.+..++.+..-|.++. |. +. ....+.|... . .+..
T Consensus 213 -D--eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~-------~----ly~~ 278 (764)
T PRK12326 213 -D--EALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGI-------D----LYSE 278 (764)
T ss_pred -c--cccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCc-------c----ccCc
Confidence 1 2345678887653 233444444444443321 10 00 0111111100 0 0000
Q ss_pred HHHHHHHHHHHHHHhhHH-HHHhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHH----
Q 000099 1210 TEKKVIIIHRLHQILEPF-MLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK---- 1277 (2240)
Q Consensus 1210 ~Ee~~lii~RLhklLrPF-mLRRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~e~---- 1277 (2240)
+.....++.+...|+.. ++.|-+.-|.. +....+|. ..| .+..-+.+.+.....+.+......
T Consensus 279 -~~~~~~~~~i~~AL~A~~l~~~d~dYiV~---dgeV~iVD-e~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsI 353 (764)
T PRK12326 279 -EHVGTTLTQVNVALHAHALLQRDVHYIVR---DGKVHLIN-ASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTI 353 (764)
T ss_pred -chhHHHHHHHHHHHHHHHHHhcCCcEEEE---CCEEEEEE-CCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehh
Confidence 00011223333333332 22221111111 11111111 122 233344455544333322221100
Q ss_pred --hhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhcCCeEEEE
Q 000099 1278 --RRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRTGHRVLLF 1350 (2240)
Q Consensus 1278 --~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~l-----s~d~LirsSGKLelLdrIL~kL~atGhKVLIF 1350 (2240)
...+.......+...........|+++-+.+.+..|..... ..........|+..+..-+.++.+.|.-|||.
T Consensus 354 T~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVg 433 (764)
T PRK12326 354 TVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVG 433 (764)
T ss_pred hHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 00000000000001111223446677766655544432211 11112233467777777777888899999999
Q ss_pred ecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCC--------------
Q 000099 1351 STMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA-------------- 1416 (2240)
Q Consensus 1351 SQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaA-------------- 1416 (2240)
|......+.|...|...|+++..|+..-. ++-.++|.+- + ....+-|+|..+|+|.|+.-.
T Consensus 434 t~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~A--G--~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~G 508 (764)
T PRK12326 434 THDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEA--G--KYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELG 508 (764)
T ss_pred eCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhc--C--CCCcEEEEecCCCCccCeecCCCcccchHHHHHcC
Confidence 99999999999999999999999998744 3334555543 2 223488999999999997733
Q ss_pred -CeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhh
Q 000099 1417 -DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSH 1462 (2240)
Q Consensus 1417 -DtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~ 1462 (2240)
=+||.-..+-|...+.|..||++|-|......+| +++|+.++..
T Consensus 509 GLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~--lSleDdl~~~ 553 (764)
T PRK12326 509 GLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF--VSLEDDVVAA 553 (764)
T ss_pred CcEEEeccCCchHHHHHHHhcccccCCCCCceeEE--EEcchhHHHh
Confidence 3889999999999999999999999998877654 3456666543
|
|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-11 Score=168.49 Aligned_cols=98 Identities=14% Similarity=0.268 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcC
Q 000099 1943 CKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYG 2022 (2240)
Q Consensus 1943 ck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~ 2022 (2240)
|..|+..|-.+ -=+|.|+++.+.++.||||+| |++||||.||..|+..+.|.+.++|+.||+|||+||.+||+
T Consensus 1306 ~e~il~e~~~~------~~awPFlepVn~~~vp~Y~~I-Ik~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~ 1378 (1404)
T KOG1245|consen 1306 CEDILHELVVH------KAAWPFLEPVNPKEVPDYYDI-IKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNE 1378 (1404)
T ss_pred HHHHHHHHHHh------hhcchhhccCChhhcccHHHH-hcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhcc
Confidence 88888888654 458999999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000099 2023 FSHEVRSEARKVHDLFFDLLKIAFPD 2048 (2240)
Q Consensus 2023 ~~sev~~dA~~L~~~F~~~~k~~fP~ 2048 (2240)
. |++++....|+++|..++...||.
T Consensus 1379 ~-s~i~~ag~~l~~ff~~~~~~~~~~ 1403 (1404)
T KOG1245|consen 1379 D-SEIGRAGTCLRRFFHKRWRKKFPV 1403 (1404)
T ss_pred c-hhhhhhcchHHHHHHHHHHhhcCC
Confidence 9 999999999999999999999995
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-09 Score=142.10 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=63.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHH-HH---HHH
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKS-EL---HKW 1072 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~-Ef---~Kw 1072 (2240)
+.+.||+|.+.+..+...+.++..+++-.+||+|||+.++..+.+... ...+++|.||+. |..||.. ++ .+.
T Consensus 243 ~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~ 319 (850)
T TIGR01407 243 GLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQLLEKDIPLLNEI 319 (850)
T ss_pred CCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 457999999999888888877888888899999999998887665543 345899999976 4677654 43 444
Q ss_pred CC-CCeEEEEecch
Q 000099 1073 LP-SVSCIYYVGAK 1085 (2240)
Q Consensus 1073 ~P-slkVvvy~Gsk 1085 (2240)
++ .+++++.+|..
T Consensus 320 ~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 320 LNFKINAALIKGKS 333 (850)
T ss_pred cCCCceEEEEEcch
Confidence 43 46676666644
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.8e-11 Score=148.77 Aligned_cols=119 Identities=16% Similarity=0.218 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
+-.+.+.++++..|.+.+|.+|+++.+.|.++|+|+..|+||.+ |..||.|.-|..||+..+|.+.+.|..|+.|||.|
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~~p~yy~~-i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~en 129 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKEFPEYYYV-IQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTEN 129 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhhccccccCCCccee-ecCcccHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 34455789999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHH------HhCCCChhHHhhh
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLK------IAFPDTDFREARS 2056 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k------~~fP~~~f~~a~~ 2056 (2240)
|+.||.++|++|++|+.|.++|....- ...++.++..|+.
T Consensus 130 a~~~n~~ds~~~~~s~~l~~~~~~~~~~~~d~e~s~~~~~~l~~~~ 175 (629)
T KOG1827|consen 130 ARLYNRPDSLIYKDSGELEKYFISLEDEKKDGELSMESNEELKAGG 175 (629)
T ss_pred HHHhcCcchhhhhhhhhhhcchhhhhccccchhhccccccccccCC
Confidence 999999999999999999999988653 3444444444443
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-08 Score=129.79 Aligned_cols=156 Identities=14% Similarity=0.167 Sum_probs=114.9
Q ss_pred HHHHHHcCCCCCCCCCccc-----cchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEe
Q 000099 1299 MELRKTCNHPLLNYPYFSD-----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRR 1373 (2240)
Q Consensus 1299 mqLRKICNHP~L~~p~~~~-----ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~r 1373 (2240)
..|.++-+.+.+..|.... ...........|+..+..-+..+.+.|.-|||-|.+....+.|..+|...|+++-.
T Consensus 399 ~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~V 478 (913)
T PRK13103 399 FEFRQIYGLDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKV 478 (913)
T ss_pred HHHHHHhCCCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHH
Confidence 4566666665554443321 11122334457888888888888999999999999999999999999999999988
Q ss_pred ecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCC-------------------------------------CC
Q 000099 1374 IDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ-------------------------------------SA 1416 (2240)
Q Consensus 1374 LDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQ-------------------------------------aA 1416 (2240)
|+.... +.-.++|.+ ++.. -.+-|+|..+|+|.|+. +-
T Consensus 479 LNAk~~-~~EA~IIa~--AG~~--GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GG 553 (913)
T PRK13103 479 LNAKYH-EKEAEIIAQ--AGRP--GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGG 553 (913)
T ss_pred hccccc-hhHHHHHHc--CCCC--CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCC
Confidence 887643 333445542 2332 34789999999999975 23
Q ss_pred CeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1417 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1417 DtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
=+||.-..+-|...+.|..||++|-|.......|. ++++.+++
T Consensus 554 LhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l--SlED~Lmr 596 (913)
T PRK13103 554 LHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL--SLEDSLMR 596 (913)
T ss_pred CEEEeeccCchHHHHHHhccccccCCCCCceEEEE--EcCcHHHH
Confidence 48899999999999999999999999988776553 34555554
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.6e-09 Score=137.05 Aligned_cols=173 Identities=22% Similarity=0.169 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--------CCCeEEEec-hHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--------YGPHLIIVP-NAVLVNWKSELH 1070 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--------~GP~LIVVP-~SLL~QW~~Ef~ 1070 (2240)
.|-+.|-....-.+ ....|.+||.++|.|||-.|+.-|..-+..+.+ ...+..|+| .+|+.-|+..|.
T Consensus 309 sLNrIQS~v~daAl---~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAAL---RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred hhhHHHHHHHHHHh---cCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 44455554443333 234567999999999998887766654432221 125678899 458888999999
Q ss_pred HHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHH---HHhhhhcc-ccCcceEecccccccCC-chhHH----
Q 000099 1071 KWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI---MYDRSKLS-KVDWKYIIIDEAQRMKD-RESVL---- 1141 (2240)
Q Consensus 1071 Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L---~kD~s~L~-kikWd~VIIDEAHrLKN-~~SKl---- 1141 (2240)
+|+..+.+.+..-+.+.... ......-+|+|||++.. .+...... .--++++||||.|-+-. ....+
T Consensus 386 kRla~~GI~V~ElTgD~~l~----~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIV 461 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLG----KEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIV 461 (1674)
T ss_pred hhccccCcEEEEecccccch----hhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHH
Confidence 99877655554433332211 11234568999998865 22111111 11367899999999832 33332
Q ss_pred HHHhhcc----ccceEEEeecCCCCCCHHHHHHHHhhhcccccC
Q 000099 1142 ARDLDRY----RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFD 1181 (2240)
Q Consensus 1142 skaLk~L----ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~ 1181 (2240)
.+.+.+. ...+.++||||- -|..|+-++|..-.+++|.
T Consensus 462 aRt~r~ses~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf~ 503 (1674)
T KOG0951|consen 462 ARTFRRSESTEEGSRLVGLSATL--PNYEDVASFLRVDPEGLFY 503 (1674)
T ss_pred HHHHHHhhhcccCceeeeecccC--CchhhhHHHhccCcccccc
Confidence 3333333 234578999994 3667777655544466654
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.8e-09 Score=121.69 Aligned_cols=126 Identities=19% Similarity=0.227 Sum_probs=86.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC--CeEEEechH-HHHHHHHHH---HHHCC
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG--PHLIIVPNA-VLVNWKSEL---HKWLP 1074 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~G--P~LIVVP~S-LL~QW~~Ef---~Kw~P 1074 (2240)
.-+-|.+++...+- +...+.-.-.|+|||.... ++.|-...+..| .+||+|-+. |..|...|+ .++.|
T Consensus 65 psevqhecipqail----gmdvlcqaksgmgktavfv--l~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP 138 (387)
T KOG0329|consen 65 PSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFV--LATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMP 138 (387)
T ss_pred chHhhhhhhhHHhh----cchhheecccCCCceeeee--hhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCC
Confidence 34568888877665 5566777889999996653 333333333333 568889876 556666664 55579
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccC
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLK 1135 (2240)
++++.++.|+-...+.. +.....++|+|.|++.+... ...|.-.+..+.|+|||+.|.
T Consensus 139 ~vkvaVFfGG~~Ikkde---e~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkml 198 (387)
T KOG0329|consen 139 SVKVSVFFGGLFIKKDE---ELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKML 198 (387)
T ss_pred CceEEEEEcceeccccH---HHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHH
Confidence 99999999876544321 23344789999999988643 234555577899999999875
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-08 Score=127.08 Aligned_cols=155 Identities=20% Similarity=0.204 Sum_probs=106.1
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH-HHHHHHHCCC
Q 000099 997 RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW-KSELHKWLPS 1075 (2240)
Q Consensus 997 ~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW-~~Ef~Kw~Ps 1075 (2240)
...+|-.+|++++..|.. +-..++|.-|-.|||++|=..|+--. ....+++.-.|...|.|. .++|..-|.+
T Consensus 294 ~pFelD~FQk~Ai~~ler----g~SVFVAAHTSAGKTvVAEYAialaq---~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLER----GDSVFVAAHTSAGKTVVAEYAIALAQ---KHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred CCCCccHHHHHHHHHHHc----CCeEEEEecCCCCcchHHHHHHHHHH---hhccceEecchhhhhccchHHHHHHhccc
Confidence 346899999999987765 77889999999999999865554322 223467888898777764 5778887766
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----hhccccCcceEecccccccCCchh-HHHH-Hhhccc
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQRMKDRES-VLAR-DLDRYR 1149 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----s~L~kikWd~VIIDEAHrLKN~~S-Klsk-aLk~Lk 1149 (2240)
+. +++|.... ......+|+|-+.|+... +.+. +..+||+||.|++.+..- -.|. .+..+.
T Consensus 367 vg--LlTGDvqi----------nPeAsCLIMTTEILRsMLYrgadliR--DvE~VIFDEVHYiND~eRGvVWEEViIMlP 432 (1248)
T KOG0947|consen 367 VG--LLTGDVQI----------NPEASCLIMTTEILRSMLYRGADLIR--DVEFVIFDEVHYINDVERGVVWEEVIIMLP 432 (1248)
T ss_pred cc--eeecceee----------CCCcceEeehHHHHHHHHhcccchhh--ccceEEEeeeeecccccccccceeeeeecc
Confidence 65 55665432 235679999999887542 2333 467799999999966322 2333 333443
Q ss_pred c-ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC
Q 000099 1150 C-QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192 (2240)
Q Consensus 1150 s-~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~k 1192 (2240)
. -..|+||||- .+..+|.+|++.
T Consensus 433 ~HV~~IlLSATV--------------------PN~~EFA~WIGR 456 (1248)
T KOG0947|consen 433 RHVNFILLSATV--------------------PNTLEFADWIGR 456 (1248)
T ss_pred ccceEEEEeccC--------------------CChHHHHHHhhh
Confidence 2 2479999992 234678888864
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.8e-08 Score=121.04 Aligned_cols=102 Identities=26% Similarity=0.305 Sum_probs=93.6
Q ss_pred HHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCC
Q 000099 1338 IKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1417 (2240)
Q Consensus 1338 ~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaAD 1417 (2240)
....+.+.||||-+=...|++-|.+||...|+++..+|.....-+|.++|.+.+.+.-+ +|+.....-+||||+.+.
T Consensus 440 ~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLLREGLDiPEVs 516 (663)
T COG0556 440 RKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLLREGLDLPEVS 516 (663)
T ss_pred HHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhhhccCCCccee
Confidence 33356789999999999999999999999999999999999999999999999986655 799999999999999999
Q ss_pred eEEEcCCCC-----ChhhHHHHhhhhhccC
Q 000099 1418 TVIIYDPDP-----NPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1418 tVIifD~pW-----NP~~d~QAiGRAhRIG 1442 (2240)
.|.|+|.|- +-...+|-||||.|--
T Consensus 517 LVAIlDADKeGFLRse~SLIQtIGRAARN~ 546 (663)
T COG0556 517 LVAILDADKEGFLRSERSLIQTIGRAARNV 546 (663)
T ss_pred EEEEeecCccccccccchHHHHHHHHhhcc
Confidence 999999984 8889999999999954
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.4e-08 Score=129.06 Aligned_cols=129 Identities=25% Similarity=0.365 Sum_probs=93.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-- 1074 (2240)
|..++..|.--+. .+..+.--.|+ .+||+|||.-.+...+|+.. ++ ++++||+|+. |+.|-.+.+.++..
T Consensus 80 G~~~ws~QR~Wak---R~~rg~SFaii-APTGvGKTTfg~~~sl~~a~-kg--kr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 80 GFRPWSAQRVWAK---RLVRGKSFAII-APTGVGKTTFGLLMSLYLAK-KG--KRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred CCCchHHHHHHHH---HHHcCCceEEE-cCCCCchhHHHHHHHHHHHh-cC--CeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 5578888986444 44444444455 58999999766555555543 23 6899999987 56777788888863
Q ss_pred ---CCeEEEEecch--hhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccC
Q 000099 1075 ---SVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1075 ---slkVvvy~Gsk--deRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLK 1135 (2240)
.+.++ ||+.- .+++.. -..+..++|+|+|||-.++.+..+.|.+.+|++|+||.++-+.
T Consensus 153 ~~~~~~~~-yh~~l~~~ekee~-le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 153 GSLDVLVV-YHSALPTKEKEEA-LERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred CCcceeee-eccccchHHHHHH-HHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHH
Confidence 33344 88863 333333 3457788999999999999999999999999999999998763
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-07 Score=121.37 Aligned_cols=406 Identities=16% Similarity=0.237 Sum_probs=222.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH----HHHHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL----VNWKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL----~QW~~Ef~Kw~ 1073 (2240)
|...++-|+-|.--|. .|.|.-..||=|||+++.. .+||....| ..+-||+.+..| ..|...|.+|+
T Consensus 76 G~r~ydVQliGglvLh------~G~IAEMkTGEGKTLvAtL-payLnAL~G--kgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 76 GKRPYDVQIIGGIILD------LGSVAEMKTGEGKTITSIA-PVYLNALTG--KGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CCCcCchHHHHHHHHh------cCCeeeecCCCCccHHHHH-HHHHHHhcC--CceEEEecchhhhhhhHHHHHHHHHHh
Confidence 4345555888874432 3557779999999998643 445543333 345566666655 35999999998
Q ss_pred CCCeEEEEe-c-chhhHhHHHHHHHhhcCCcEEEEcHHH-----HHHh----hhhccccCcceEecccccccCCchhHHH
Q 000099 1074 PSVSCIYYV-G-AKDQRSRLFSQEVAALKFNVLVTTYEF-----IMYD----RSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (2240)
Q Consensus 1074 PslkVvvy~-G-skdeRk~l~~qei~~~~fdVVITTYE~-----L~kD----~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (2240)
+ +.|.+.. + ....|+. ....+|+-+|..- |+.. ...+-...+.|.||||++.+.=
T Consensus 147 G-LsvG~i~~~~~~~~rr~-------aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILI------ 212 (925)
T PRK12903 147 G-LSVGINKANMDPNLKRE-------AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILI------ 212 (925)
T ss_pred C-CceeeeCCCCChHHHHH-------hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheee------
Confidence 4 4444333 3 2333333 2346788777544 3322 1223345788999999998741
Q ss_pred HHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCC-----------------hHHHHhhhcCCcccCCCCCCCCh
Q 000099 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN-----------------RKAFHDWFSQPFQKEGPTHNADD 1205 (2240)
Q Consensus 1143 kaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S-----------------~~sF~e~F~kPf~~~g~~~~~e~ 1205 (2240)
. .+..-|++||.+ ... .++|..++-+.+.+-.. .....+.|.. .+
T Consensus 213 ---D--EArTPLIISg~~-~~~-~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i--~n--------- 274 (925)
T PRK12903 213 ---D--EAKTPLIISGGQ-SND-SNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKL--KN--------- 274 (925)
T ss_pred ---c--ccCCcccccCCC-ccc-hHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCC--Cc---------
Confidence 1 123346667643 222 24555444332211100 0011111110 00
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHH-HhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHH
Q 000099 1206 DWLETEKKVIIIHRLHQILEPFML-RRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEK 1277 (2240)
Q Consensus 1206 d~l~~Ee~~lii~RLhklLrPFmL-RRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~e~ 1277 (2240)
+........++.+...|+...+ .|-+.=|. .+....+|. ..| .+..-+.+.+.....+.+.....
T Consensus 275 --Ly~~~n~~l~h~i~~AL~A~~lf~rd~dYiV---~dg~V~IVD-efTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~- 347 (925)
T PRK12903 275 --LYDIENSELVHRIQNALRAHKVMKEDVEYIV---RDGKIELVD-QFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETK- 347 (925)
T ss_pred --ccChhhHHHHHHHHHHHHHHHHHhcCCceEE---ECCEEEEEE-CCCCCCCCCCccchHHHHHHHHHcCCCCCCCce-
Confidence 0011112233445555554432 22222111 111111211 122 22333444443332222221110
Q ss_pred hhhhcChhhH--HHHHHH-------HHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHHHHhc
Q 000099 1278 RRVQKNPIYQ--AKVYKT-------LNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKLQRT 1343 (2240)
Q Consensus 1278 ~~l~~~~~~~--ak~~~s-------L~nilmqLRKICNHP~L~~p~~~~l-----s~d~LirsSGKLelLdrIL~kL~at 1343 (2240)
.+..- .++ -+.|.. ....-..+.++-+...+..|..... ..........|+..+..-+.++...
T Consensus 348 -TlAsI-T~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~ 425 (925)
T PRK12903 348 -TLATI-TYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKK 425 (925)
T ss_pred -eeeee-hHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhc
Confidence 00000 000 000111 1112235666666665554443221 1112233457888888888888889
Q ss_pred CCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH-HHHHHHhcCCCCccEEEEecccccccCCCCCCC-----
Q 000099 1344 GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE-SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD----- 1417 (2240)
Q Consensus 1344 GhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe-eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaAD----- 1417 (2240)
|..|||.|......+.|..+|...|+++..|+.... +++ .+|. +++. .-.+.|+|..+|+|.|+.-..
T Consensus 426 gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa--~AG~--~GaVTIATNMAGRGTDI~Lg~~V~~~ 499 (925)
T PRK12903 426 GQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA--KAGQ--KGAITIATNMAGRGTDIKLSKEVLEL 499 (925)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH--hCCC--CCeEEEecccccCCcCccCchhHHHc
Confidence 999999999999999999999999999999998643 333 3443 3332 235889999999999988544
Q ss_pred ---eEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1418 ---TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1418 ---tVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
+||....+-|...+.|..||++|-|.......| +++++.+++
T Consensus 500 GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~--lSLeD~L~r 544 (925)
T PRK12903 500 GGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF--ISLDDQLFR 544 (925)
T ss_pred CCcEEEecccCchHHHHHHHhcccccCCCCCcceEE--EecchHHHH
Confidence 999999999999999999999999998877654 344555543
|
|
| >cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.2e-11 Score=125.31 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=76.7
Q ss_pred ccccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000099 1706 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1782 (2240)
Q Consensus 1706 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1782 (2240)
+.++. +.++|++.+ +++||+++++| .+|++..|||||++|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 3 ~~~~~-l~~~i~~~~-----d~~gr~~~~~F~~lp~~~~~pdYy~vI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~ 75 (103)
T cd05517 3 QILEQ-LLEAVMTAT-----DPSGRLISELFQKLPSKVLYPDYYAVIKEPIDLKT-IAQRIQSGYYKSIEDMEKDLDLMV 75 (103)
T ss_pred HHHHH-HHHHHHHhh-----CcCCCChhHHHhcCCCCCCCCCHHHHcCCCcCHHH-HHHHHCcCCCCCHHHHHHHHHHHH
Confidence 45666 888899998 67999999999 99999999999999999999999 9999999999999999999998
Q ss_pred --------CCCccccCCccccccccc
Q 000099 1783 --------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
+||+++ .++..|+
T Consensus 76 ~Na~~yN~~~s~i~-----~~A~~l~ 96 (103)
T cd05517 76 KNAKTFNEPGSQVY-----KDANAIK 96 (103)
T ss_pred HHHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 8887766
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-10 Score=146.50 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
......+++..|. .|.=.++|+.+..+.+.||||.+ |.+||||++|+.+|+.+.|..+.+|++|+..+|.||+
T Consensus 607 ~~s~~~~il~~l~------~h~~awPf~~Pv~~~e~pdyy~~-I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr 679 (720)
T KOG1472|consen 607 LFSAIQNILDQLQ------NHGDAWPFLKPVNKKEVPDYYDV-IKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCR 679 (720)
T ss_pred hhHHHHhHHhhhh------cCCccCCccCccccccCCcHHHH-hcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhh
Confidence 3334455555554 67778999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
-||+..++.|+.|..|..+|..+|+..++
T Consensus 680 ~yn~~~~~y~k~~~~le~~~~~k~~~~i~ 708 (720)
T KOG1472|consen 680 MYNGSDTQYYKCAQALEKFFLFKLNELIL 708 (720)
T ss_pred ccCCccchheecccchhhhhcchhhhhhh
Confidence 99999999999999999999999998766
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-08 Score=138.90 Aligned_cols=161 Identities=20% Similarity=0.184 Sum_probs=104.9
Q ss_pred CCcHHHHHHHHHHHH-----hh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLS-----LY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSE 1068 (2240)
Q Consensus 1000 tLRPYQleGLqwLls-----L~-----~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~E 1068 (2240)
..|+||.-...+++. .. ..+.+|++.+-+|+|||++++-+...|.+. .....++|||- ..|-.|-..+
T Consensus 244 ~~k~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~ 322 (962)
T COG0610 244 VKKKYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDE 322 (962)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHH
Confidence 566665554444443 11 234579999999999999997777767664 55556777776 4477888999
Q ss_pred HHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh----hccccCcceEecccccccCCchhHHHHH
Q 000099 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKDRESVLARD 1144 (2240)
Q Consensus 1069 f~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s----~L~kikWd~VIIDEAHrLKN~~SKlska 1144 (2240)
|..+........-..+.+.-++ .+....-.|+|||.+.|..... .....+.-+||+|||||-- ...+.+.
T Consensus 323 f~~~~~~~~~~~~~~s~~~Lk~----~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~~~ 396 (962)
T COG0610 323 FQSFGKVAFNDPKAESTSELKE----LLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELAKL 396 (962)
T ss_pred HHHHHHhhhhcccccCHHHHHH----HHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHHHH
Confidence 9998755443332222222222 2333356899999998865542 2345577899999999963 3344444
Q ss_pred hh-ccccceEEEeecCCCCCCHHH
Q 000099 1145 LD-RYRCQRRLLLTGTPLQNDLKE 1167 (2240)
Q Consensus 1145 Lk-~Lks~~RLLLTGTPLQNnL~E 1167 (2240)
++ .|.....+++||||+...-..
T Consensus 397 ~~~~~~~a~~~gFTGTPi~~~d~~ 420 (962)
T COG0610 397 LKKALKKAIFIGFTGTPIFKEDKD 420 (962)
T ss_pred HHHHhccceEEEeeCCcccccccc
Confidence 44 455577899999998655333
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=129.95 Aligned_cols=97 Identities=19% Similarity=0.310 Sum_probs=89.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcC---ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQ---LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rG---iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
.-.|.||||....-+|-|+.++..+| |.++.++|+-+..+|.+-|+.|...+-. |||+|+++++|||++..-.|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFM 580 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceE
Confidence 35689999999999999999999875 5788899999999999999999987666 99999999999999999999
Q ss_pred EEcCCCCChhhHHHHhhhhhccC
Q 000099 1420 IIYDPDPNPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1420 IifD~pWNP~~d~QAiGRAhRIG 1442 (2240)
|+..+|-.-..|++||||++|.-
T Consensus 581 invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEEecCcccchhhhhhhccchhh
Confidence 99999999999999999998854
|
|
| >cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.6e-11 Score=121.96 Aligned_cols=87 Identities=15% Similarity=0.051 Sum_probs=77.7
Q ss_pred cccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000099 1707 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1782 (2240)
Q Consensus 1707 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1782 (2240)
.++. +.++|.+.. +.+|++++++| .+|++..|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 6 ~l~~-i~~~i~~~k-----d~~g~~~s~~F~~lp~k~~~pdYy~~I~~P~dL~t-I~~kl~~~~Y~s~~ef~~D~~l~f~ 78 (106)
T cd05525 6 VLKE-ICDAIITYK-----DSNGQSLAIPFINLPSKKKNPDYYERITDPVDLST-IEKQILTGYYKTPEAFDSDMLKVFR 78 (106)
T ss_pred HHHH-HHHHHHHhh-----ccCCCcccHhhccCCCcccCCchhhhCCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 4555 777888888 67899999999 99999999999999999999999 9999999999999999999999
Q ss_pred -------CCCccccCCccccccccc-ccccc
Q 000099 1783 -------SGSWTHDRDEGEDEQVLQ-PKIKR 1805 (2240)
Q Consensus 1783 -------~~Sw~~~~~~~~d~~~~~-~~~~r 1805 (2240)
+||+|+ .++..|+ .+..+
T Consensus 79 Na~~yn~~~S~i~-----~~A~~L~~~f~~~ 104 (106)
T cd05525 79 NAEKYYGRKSPIG-----RDVCRLRKAYYQA 104 (106)
T ss_pred HHHHHCCCCCHHH-----HHHHHHHHHHHHc
Confidence 999999 8888877 44433
|
ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-10 Score=142.60 Aligned_cols=192 Identities=15% Similarity=0.132 Sum_probs=143.7
Q ss_pred CCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000099 1726 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1794 (2240)
Q Consensus 1726 ~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1794 (2240)
.-+|+.++.+| .+||++.||+||.+|+.||||.+ |..+|..|.|.++.++-.||.+ |+||++ .
T Consensus 159 ~~~~~~~s~~F~~~p~k~~~PdYy~iIk~Pm~L~~-i~kkl~~~~Y~s~eef~~D~~lM~~N~~~yN~~~s~v~-----~ 232 (371)
T COG5076 159 LRDGRFLSSIFLGLPSKREYPDYYEIIKSPMDLLT-IQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVY-----V 232 (371)
T ss_pred cccccccccccccCCccccCCChheeecchhhHHH-HHHHHHhhhhhhHHHHHHHHHHHHHhhhhccCCCcchh-----h
Confidence 56999999999 99999999999999999999999 9999999999999999999997 344333 1
Q ss_pred ccccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCc
Q 000099 1795 DEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSS 1874 (2240)
Q Consensus 1795 d~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 1874 (2240)
++..++
T Consensus 233 ~a~~l~-------------------------------------------------------------------------- 238 (371)
T COG5076 233 DAKELE-------------------------------------------------------------------------- 238 (371)
T ss_pred hhHHHH--------------------------------------------------------------------------
Confidence 111111
Q ss_pred ccccCCCccccCCCcccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhh
Q 000099 1875 KSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRI 1954 (2240)
Q Consensus 1875 ~~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kL~~~~ 1954 (2240)
+.+-.+ +..-.....++.. .++. -...+ ....+ .-
T Consensus 239 ~~~~~~----------------------i~~~~~~~~~~~~---------~~~~------~~~~~------~~~~~--i~ 273 (371)
T COG5076 239 KYFLKL----------------------IEEIPEEMLELSI---------KPGR------EEREE------RESVL--IT 273 (371)
T ss_pred HHHHHH----------------------HHhccccchhhcc---------Cccc------ccccc------chhhc--cc
Confidence 000000 0000001011111 1111 01111 00011 11
Q ss_pred ccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHH
Q 000099 1955 EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKV 2034 (2240)
Q Consensus 1955 d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L 2034 (2240)
+...+.-.+.|+..|++.+.|+||+. |..++|+.+...++....|..+.+|..|..+|++||..||+.--..+..+..+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (371)
T COG5076 274 NSQAHVGAWPFLRPVSDEEVPDYYKD-IRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYKNANVL 352 (371)
T ss_pred ccccccccccccccCCcccccchhhh-hhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhhhccch
Confidence 33677788999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 000099 2035 HDLFFDLLK 2043 (2240)
Q Consensus 2035 ~~~F~~~~k 2043 (2240)
.++|...+.
T Consensus 353 ~~~~~~~~~ 361 (371)
T COG5076 353 EDFVIKKTR 361 (371)
T ss_pred hhhHhhhhh
Confidence 999887654
|
|
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.7e-08 Score=125.76 Aligned_cols=245 Identities=16% Similarity=0.237 Sum_probs=138.1
Q ss_pred CCCccCCCCCcHHHHHHHHHHHHhhcC------CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 992 QPSMLRAGTLRDYQIVGLQWMLSLYNN------KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n------~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
.|++ ..|-|-..|+++|-|++..... ..|-||.|.-|.||-.++..+|...+- +++.+...|-|-..|-..-
T Consensus 257 lP~i-~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL-kGRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 257 LPSI-DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL-KGRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred cccC-cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh-cccceeEEEEeccccccch
Confidence 5663 3468999999999999976642 334589999999997777666654432 4555455555666677666
Q ss_pred HHHHHHHC-CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--------hhccc-cCc------ceEecc
Q 000099 1066 KSELHKWL-PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSK-VDW------KYIIID 1129 (2240)
Q Consensus 1066 ~~Ef~Kw~-PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--------s~L~k-ikW------d~VIID 1129 (2240)
.+.+.... +.+.|..+ ++-.-.++-..+....+-.|+++||..|+-+. ..|.. +.| .+||+|
T Consensus 335 ERDL~DigA~~I~V~al--nK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfD 412 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHAL--NKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFD 412 (1300)
T ss_pred hhchhhcCCCCccceeh--hhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEeh
Confidence 77776652 34333322 11111111111222345579999999987541 11111 123 589999
Q ss_pred cccccCC-------chhHHHHHhh----ccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHH---HHhhhcCCcc
Q 000099 1130 EAQRMKD-------RESVLARDLD----RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKA---FHDWFSQPFQ 1195 (2240)
Q Consensus 1130 EAHrLKN-------~~SKlskaLk----~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~s---F~e~F~kPf~ 1195 (2240)
|||+.|| ..++..+++. .+...+.+..|||-.. |-.++..+..-++|+.... |.++ ...++
T Consensus 413 ECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs----EPrNMaYM~RLGlWGegtaf~eF~eF-i~AvE 487 (1300)
T KOG1513|consen 413 ECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS----EPRNMAYMVRLGLWGEGTAFPEFEEF-IHAVE 487 (1300)
T ss_pred hhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC----CcchhhhhhhhccccCCCcCccHHHH-HHHHH
Confidence 9999998 2345444444 3456678889999533 3344555555666655433 3332 23334
Q ss_pred cCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHH
Q 000099 1196 KEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWI 1263 (2240)
Q Consensus 1196 ~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L 1263 (2240)
+.|........ +...++-..+-|-- .+-.....+-.++|+..-+.+|+..
T Consensus 488 kRGvGAMEIVA-------------MDMK~rGmYiARQL-----SFkgVsFrieEv~ls~eF~k~Yn~a 537 (1300)
T KOG1513|consen 488 KRGVGAMEIVA-------------MDMKLRGMYIARQL-----SFKGVSFRIEEVPLSKEFRKVYNRA 537 (1300)
T ss_pred hcCCceeeeee-------------hhhhhhhhhhhhhc-----cccCceEEEEecccCHHHHHHHHHH
Confidence 44333222111 11112222221110 1233456677899999999999743
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4e-08 Score=131.30 Aligned_cols=159 Identities=19% Similarity=0.169 Sum_probs=109.7
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCC
Q 000099 997 RAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPS 1075 (2240)
Q Consensus 997 ~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~Ps 1075 (2240)
.+.+|.++|.+++.-+.. +.+.++|..||.|||+++-..|.+-+.. + .++....|... ..|=.++|..-+..
T Consensus 116 ~~F~LD~fQ~~a~~~Ler----~esVlV~ApTssGKTvVaeyAi~~al~~-~--qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 116 YPFELDPFQQEAIAILER----GESVLVCAPTSSGKTVVAEYAIALALRD-G--QRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred CCCCcCHHHHHHHHHHhC----CCcEEEEccCCCCcchHHHHHHHHHHHc-C--CceEeccchhhhhhhHHHHHHHHhhh
Confidence 467999999999976665 8889999999999999998887766542 2 24788889664 45556777766653
Q ss_pred C--eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhccc
Q 000099 1076 V--SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR 1149 (2240)
Q Consensus 1076 l--kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lk 1149 (2240)
+ .+-+++|.... ..+..++|+|-+.|+.-. ....-.....||+||+|.|.... ..+=..+..+.
T Consensus 189 v~~~vGL~TGDv~I----------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 189 VADMVGLMTGDVSI----------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhccceecceee----------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 3 34555564321 345678888888886541 21222356789999999997633 33334445555
Q ss_pred cc-eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcC
Q 000099 1150 CQ-RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192 (2240)
Q Consensus 1150 s~-~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~k 1192 (2240)
.. +.++||||- ++...|.+|+..
T Consensus 259 ~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 259 DHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred CCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 54 689999992 455788888864
|
|
| >cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-10 Score=119.62 Aligned_cols=84 Identities=20% Similarity=0.238 Sum_probs=75.7
Q ss_pred cccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000099 1707 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1782 (2240)
Q Consensus 1707 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1782 (2240)
.+.. +.++++... +++||+++++| .+|++..|||||.+|++||||++ |..+|+.|+|.++.|+..|+.+
T Consensus 5 ~~~~-il~~v~~~~-----d~~g~~~s~~F~~~p~~~~~pdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~li~~ 77 (107)
T cd05516 5 KMNK-IVDVVIKYK-----DSDGRQLAEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLEDLEKDVMLLCQ 77 (107)
T ss_pred HHHH-HHHHHHhhh-----CcCCCEeeHHhhcCCCcccCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHH
Confidence 3445 677788887 66899999999 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccccc
Q 000099 1783 -------SGSWTHDRDEGEDEQVLQPK 1802 (2240)
Q Consensus 1783 -------~~Sw~~~~~~~~d~~~~~~~ 1802 (2240)
+||+|+ .++..|+-.
T Consensus 78 Na~~yN~~~s~i~-----~~a~~l~~~ 99 (107)
T cd05516 78 NAQTFNLEGSLIY-----EDSIVLQSV 99 (107)
T ss_pred HHHHHCCCCCHHH-----HHHHHHHHH
Confidence 999999 888877733
|
SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-10 Score=116.86 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=73.3
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+.++|.+++ +.+||+++.+| .+|++..|||||.+|++||||.+ |..+|+.|+|.++.++..|+.+
T Consensus 8 l~~~i~~~~-----~~~g~~~s~pF~~~p~~~~~PdYy~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 81 (103)
T cd05520 8 LYDTIRNAR-----NNQGQLLAEPFLKLPSKRKYPDYYQEIKNPISLQQ-IRTKLKNGEYETLEELEADLNLMFENAKRY 81 (103)
T ss_pred HHHHHHhhc-----CCCCCCccHhhhcCCCcccCCCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 677788888 67899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCcccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQP 1801 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~~ 1801 (2240)
+||+++ .++..|+-
T Consensus 82 N~~~s~i~-----~~A~~L~~ 97 (103)
T cd05520 82 NVPNSRIY-----KDAEKLQK 97 (103)
T ss_pred CCCCCHHH-----HHHHHHHH
Confidence 899999 88877773
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.8e-08 Score=116.85 Aligned_cols=208 Identities=19% Similarity=0.238 Sum_probs=118.4
Q ss_pred eEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhh----HHHHHHHHHHHHHHHHHHcCCCCCCCCCcc---
Q 000099 1244 VSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIY----QAKVYKTLNNRCMELRKTCNHPLLNYPYFS--- 1316 (2240)
Q Consensus 1244 vE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~----~ak~~~sL~nilmqLRKICNHP~L~~p~~~--- 1316 (2240)
.++.+.++|+..|+.+|+.+.......+...-+ ........ .......+...+..|+.+|+||+|..+.+.
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ 81 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCE--TNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQ 81 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHH--STTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHc--ccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccc
Confidence 367888999999999999886543221111100 00000000 012336677788999999999999655432
Q ss_pred ---ccchhhHhhcccHHHHHHHHHHHH-----HhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH-
Q 000099 1317 ---DLSKDFLVKSCGKLWILDRILIKL-----QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI- 1387 (2240)
Q Consensus 1317 ---~ls~d~LirsSGKLelLdrIL~kL-----~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI- 1387 (2240)
......+...||||.+|..+|..+ ...+.++||.|+...++|+||.+|...++.|.|++|..-.++....-
T Consensus 82 ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~ 161 (297)
T PF11496_consen 82 LLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPK 161 (297)
T ss_dssp S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S--
T ss_pred cccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCc
Confidence 112456788999999999999999 66778999999999999999999999999999999976554443322
Q ss_pred -----------HHHh-cCCCCccEEEEeccccccc----CCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1388 -----------VDFN-SHDSDCFIFLLSIRAAGRG----LNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1388 -----------k~FN-s~Ds~~fVfLLSTrAGGeG----LNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
.... .+...+.|+|++++-.... ++-...|.||-||+.+++....-..-|..--.. +.+-|++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~Piir 240 (297)
T PF11496_consen 162 NGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIR 240 (297)
T ss_dssp --------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEE
T ss_pred ccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEE
Confidence 0111 1234567778877755442 334457999999999998875544444433222 7888999
Q ss_pred Eeh
Q 000099 1452 MEA 1454 (2240)
Q Consensus 1452 LvT 1454 (2240)
++.
T Consensus 241 Lv~ 243 (297)
T PF11496_consen 241 LVP 243 (297)
T ss_dssp EEE
T ss_pred Eee
Confidence 976
|
The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B. |
| >cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-10 Score=116.31 Aligned_cols=84 Identities=20% Similarity=0.202 Sum_probs=75.8
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+.+.|...+ +++||+++.+| .+|++..|||||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 8 ~~~~i~~~~-----d~~~~~~a~~F~~~p~~~~~pdYy~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~l~~~Na~~y 81 (105)
T cd05515 8 LYNAVKNYT-----DGRGRRLSLIFMRLPSKSEYPDYYDVIKKPIDMEK-IRSKIEGNQYQSLDDMVSDFVLMFDNACKY 81 (105)
T ss_pred HHHHHHHhh-----CcCCCcccHHhccCCCcccCCcHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 666788888 67899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCccccccccc-cccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQ-PKIKRK 1806 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~-~~~~rk 1806 (2240)
+||+++ .++..|+ -+.+++
T Consensus 82 N~~~s~i~-----~~A~~L~~~~~~~~ 103 (105)
T cd05515 82 NEPDSQIY-----KDALTLQKVLLETK 103 (105)
T ss_pred CCCCCHHH-----HHHHHHHHHHHHHH
Confidence 999999 8998888 444443
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.6e-10 Score=115.04 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=74.8
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+.+.|++.. +.+||.++++| .+|++..|||||.+|++||||+. |..+|+.|+|.++.++..|+.+
T Consensus 8 l~~~v~~~~-----d~~gr~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 81 (103)
T cd05518 8 LFLYVLEYR-----EGSGRRLCDLFMEKPSKKDYPDYYKIILEPIDLKT-IEHNIRNDKYATEEELMDDFKLMFRNARHY 81 (103)
T ss_pred HHHHHHHhh-----ccCCCcccHHHhcCCCcccCccHHHHcCCCcCHHH-HHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 566677777 67999999999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccccCCccccccccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQPKIKRK 1806 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~~~~~rk 1806 (2240)
+||+|+ .++..|+-.++.|
T Consensus 82 N~~~s~i~-----~~A~~le~~~~~~ 102 (103)
T cd05518 82 NEEGSQVY-----EDANILEKVLKEK 102 (103)
T ss_pred CCCCCHHH-----HHHHHHHHHHHhc
Confidence 999999 8887777444433
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-06 Score=115.91 Aligned_cols=95 Identities=18% Similarity=0.193 Sum_probs=66.4
Q ss_pred HHHHHHHHHH-hcCCeEEEEecchhHHHHHHHHHHhcCc--eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000099 1332 ILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQL--VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (2240)
Q Consensus 1332 lLdrIL~kL~-atGhKVLIFSQ~t~~LDiLed~L~~rGi--ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGG 1408 (2240)
.+.+.|..+. ..+.++|||+....++..+.++|..... .+..+.=+++...|.+++++|+..+.. +|+.+....
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sFw 815 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCccc
Confidence 4444444443 4667899988888999988888875422 122232223334578999999874443 788899999
Q ss_pred ccCCCCC--CCeEEEcCCCC-Chh
Q 000099 1409 RGLNLQS--ADTVIIYDPDP-NPK 1429 (2240)
Q Consensus 1409 eGLNLQa--ADtVIifD~pW-NP~ 1429 (2240)
+|||+++ +..|||.-.|+ +|.
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCC
Confidence 9999997 58999998887 454
|
|
| >cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.5e-10 Score=115.45 Aligned_cols=83 Identities=14% Similarity=0.047 Sum_probs=76.4
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
++++|+++. +++||+++++| .||+ .+|+||.+|++||||.+ |..+|+.|+|.++.++..|+.+
T Consensus 11 l~~~V~~~~-----D~~Gr~~s~~f~~LP~--~~~~~~~~ik~Pi~l~~-Ik~ki~~~~Y~~ld~~~~D~~lmf~NAr~y 82 (110)
T cd05526 11 LFVSVMNHQ-----DEEGRCYSDSLAELPE--LAVDGVGPKKIPLTLDI-IKRNVDKGRYRRLDKFQEDMFEVLERARRL 82 (110)
T ss_pred HHHHHHhcc-----CCCCCCchHHHHHCCC--cccCchhhhcCCccHHH-HHHHHHcCCcCcHHHHHHHHHHHHHHHHHh
Confidence 788899999 78999999999 9999 77888999999999999 9999999999999999999998
Q ss_pred --CCCccccCCcccccccccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQPKIKRKR 1807 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~~~~~rkr 1807 (2240)
+||.|+ +|+.+||-.+.++|
T Consensus 83 N~~~S~iy-----~dA~eLq~~f~~~r 104 (110)
T cd05526 83 SRTDSEIY-----EDAVELQQFFIKIR 104 (110)
T ss_pred CcccCHHH-----HHHHHHHHHHHHHH
Confidence 999999 99999996655554
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.1e-06 Score=115.58 Aligned_cols=151 Identities=19% Similarity=0.203 Sum_probs=106.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~PslkV 1078 (2240)
.|-+-|..++.-+..........+|...||+|||-..+.+|...+. . .+-+||+||. +++.|-...|...|+ .++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-~--GkqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-Q--GKQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-c--CCEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 6778899999988876522344599999999999999999988775 2 2578999995 588888888988887 777
Q ss_pred EEEecc--hhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEeccccccc--CCchhHHH-----HHhh-cc
Q 000099 1079 IYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRESVLA-----RDLD-RY 1148 (2240)
Q Consensus 1079 vvy~Gs--kdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrL--KN~~SKls-----kaLk-~L 1148 (2240)
.+++.. +.+|...+. .+..+...|||.|...+. +.--+..+|||||=|.- |-.+..++ ..++ ..
T Consensus 274 ~vlHS~Ls~~er~~~W~-~~~~G~~~vVIGtRSAlF-----~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~ 347 (730)
T COG1198 274 AVLHSGLSPGERYRVWR-RARRGEARVVIGTRSALF-----LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK 347 (730)
T ss_pred hhhcccCChHHHHHHHH-HHhcCCceEEEEechhhc-----CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHH
Confidence 777764 334433332 355688899999998774 22335789999999974 33222111 1112 22
Q ss_pred ccceEEEeecCC
Q 000099 1149 RCQRRLLLTGTP 1160 (2240)
Q Consensus 1149 ks~~RLLLTGTP 1160 (2240)
..--.+|=||||
T Consensus 348 ~~~pvvLgSATP 359 (730)
T COG1198 348 ENAPVVLGSATP 359 (730)
T ss_pred hCCCEEEecCCC
Confidence 233478889999
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-06 Score=113.08 Aligned_cols=79 Identities=22% Similarity=0.267 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-----CCCeE
Q 000099 1005 QIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-----PSVSC 1078 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~-----PslkV 1078 (2240)
|.+.+.++...+.++...|+-..||+|||+.++..+..... .....++||++|+. |..|+..++..+. ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~-~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK-ERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH-hccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 77888888888888888888899999999998887654443 22346899999976 6678887776554 24555
Q ss_pred EEEecc
Q 000099 1079 IYYVGA 1084 (2240)
Q Consensus 1079 vvy~Gs 1084 (2240)
++.+|.
T Consensus 81 ~~lkGr 86 (636)
T TIGR03117 81 GFFPGS 86 (636)
T ss_pred EEEECC
Confidence 555553
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=111.80 Aligned_cols=232 Identities=17% Similarity=0.208 Sum_probs=138.2
Q ss_pred CCCCCcHHHHHHHHHHHHhhc------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 997 RAGTLRDYQIVGLQWMLSLYN------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 997 ~ggtLRPYQleGLqwLlsL~~------n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
..|.|-.-|+++|-++...+. .+.+-+|.|.+|.||..++.++|.+.+. +++.+++.|-+...|...-.+.+.
T Consensus 34 ~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l-~Gr~r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 34 DSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL-RGRKRAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred hcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH-cCCCceEEEECChhhhhHHHHHHH
Confidence 457899999999999997665 3455699999999999999999988775 455445555556778777667776
Q ss_pred HHCC-CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh-------hhcccc-Cc------ceEecccccccC
Q 000099 1071 KWLP-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR-------SKLSKV-DW------KYIIIDEAQRMK 1135 (2240)
Q Consensus 1071 Kw~P-slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~-------s~L~ki-kW------d~VIIDEAHrLK 1135 (2240)
..-. .+.+..+..-+.. ........|+++||..|+... ..|..+ +| .+||+||||++|
T Consensus 113 DIG~~~i~v~~l~~~~~~-------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 113 DIGADNIPVHPLNKFKYG-------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred HhCCCcccceechhhccC-------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 5432 2222222111100 112345689999999998762 222211 22 489999999999
Q ss_pred Cchh------HHHHHhhc----cccceEEEeecCCCCCCHHHHHHHHhhhccc------ccCChHHHHhhhcCCcccCCC
Q 000099 1136 DRES------VLARDLDR----YRCQRRLLLTGTPLQNDLKELWSLLNLLLPE------VFDNRKAFHDWFSQPFQKEGP 1199 (2240)
Q Consensus 1136 N~~S------KlskaLk~----Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~------iF~S~~sF~e~F~kPf~~~g~ 1199 (2240)
|..+ +...++.. +...+.+..|||...+- .. |..+..-+ .|.+..+|.+.+.+ .|.
T Consensus 186 n~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep-~N---maYm~RLGLWG~gtpf~~~~~f~~a~~~----gGv 257 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEP-RN---MAYMSRLGLWGPGTPFPDFDDFLEAMEK----GGV 257 (303)
T ss_pred CCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCC-ce---eeeeeeccccCCCCCCCCHHHHHHHHHh----cCc
Confidence 9654 44455443 45567899999986432 21 11112222 34455555544421 111
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHH
Q 000099 1200 THNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW 1262 (2240)
Q Consensus 1200 ~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~ 1262 (2240)
.. .+++..=. ..+-.+++|... +-.....++.++|++.+..+|+.
T Consensus 258 ~a------------mE~vA~dl-Ka~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 258 GA------------MEMVAMDL-KARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred hH------------HHHHHHHH-Hhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 00 00110000 112234444322 33456678899999999999973
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-05 Score=106.33 Aligned_cols=367 Identities=16% Similarity=0.206 Sum_probs=186.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~ 1073 (2240)
|...++-|+-|.--| +.|.|.-..||-|||+++. +.+++.... ...+-||+++.-|. .|...+.+|+
T Consensus 74 G~r~ydvQlig~l~L------~~G~IaEm~TGEGKTL~a~-l~ayl~aL~--G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 74 GLRHFDVQLIGGLVL------NDGKIAEMKTGEGKTLVAT-LPAYLNALT--GKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred CCCCCchHhhhhHhh------cCCccccccCCCCchHHHH-HHHHHHHhc--CCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 435566688886433 2355778999999999764 444554332 34678888888664 4999999998
Q ss_pred CCCeEEEEecc--hhhHhHHHHHHHhhcCCcEEEEcHH-----HHHHhh----hhccccCcceEecccccccCCchhHHH
Q 000099 1074 PSVSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYE-----FIMYDR----SKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (2240)
Q Consensus 1074 PslkVvvy~Gs--kdeRk~l~~qei~~~~fdVVITTYE-----~L~kD~----s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (2240)
+ +.|.+..+. ...|+. ....+|+-+|-. +|+... .......+.++||||++-+.
T Consensus 145 G-Lsvg~i~~~~~~~err~-------aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL------- 209 (870)
T CHL00122 145 G-LTVGLIQEGMSSEERKK-------NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL------- 209 (870)
T ss_pred C-CceeeeCCCCChHHHHH-------hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe-------
Confidence 5 555554432 223322 234577777754 333321 12223468999999999874
Q ss_pred HHhhccccceEEEeecCCCCCCHHHHHHHHhh----hcccc-cC----------Ch--HHHHhhhcCCcccCCCCCCCCh
Q 000099 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNL----LLPEV-FD----------NR--KAFHDWFSQPFQKEGPTHNADD 1205 (2240)
Q Consensus 1143 kaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnF----LlP~i-F~----------S~--~sF~e~F~kPf~~~g~~~~~e~ 1205 (2240)
+.. +..-|++||-+-. ..++|...+- |..+. |. +. ..+.+.|.. +.+. .+
T Consensus 210 --IDe--ArTPLiISg~~~~--~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~-i~~l-----y~- 276 (870)
T CHL00122 210 --IDE--ARTPLIISGQSKT--NIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILK-IEDL-----YS- 276 (870)
T ss_pred --ecc--CCCceeccCCCcc--chHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcC-Cccc-----cc-
Confidence 111 2334777775432 2345544433 22221 00 00 011111100 0000 00
Q ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcccCchhHHh
Q 000099 1206 DWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLRVDPEDEKR 1278 (2240)
Q Consensus 1206 d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ld~~~e~~ 1278 (2240)
... ..++.+...|+...+.. +|+.=-+-+....+|. ..| .+..-+.+.+.....+.+.......
T Consensus 277 -----~~~-~~~~~i~~AL~A~~lf~--~d~dYiV~dgeV~iVD-e~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tl 347 (870)
T CHL00122 277 -----AND-PWIPYILNALKAKELFF--KNVHYIVRNNEIIIVD-EFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETL 347 (870)
T ss_pred -----ccc-HHHHHHHHHHHHHHHHh--cCCcEEEECCEEEEEE-CCCCcCCCCCccchHHHHHHHhhcCCCCCCCceee
Confidence 000 11233334443333221 1211001111111111 122 2334444444443322222111000
Q ss_pred -h-----hhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc----hhhH-hhcccHHHHHHHHHHHHHhcCCeE
Q 000099 1279 -R-----VQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS----KDFL-VKSCGKLWILDRILIKLQRTGHRV 1347 (2240)
Q Consensus 1279 -~-----l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls----~d~L-irsSGKLelLdrIL~kL~atGhKV 1347 (2240)
. .+.......+...+.......|+++-+.+.+..|.....- .+.+ .....|+..+..-+..+...|.-|
T Consensus 348 AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPV 427 (870)
T CHL00122 348 ASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPI 427 (870)
T ss_pred eeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 0 0000000000001111223466666666655444332211 1122 233457777777777788899999
Q ss_pred EEEecchhHHHHHHHHHHhcCceEEeecCCC-CHHHHHHHHHHHhcCCCCccEEEEecccccccCCCC
Q 000099 1348 LLFSTMTKLLDILEEYLQWRQLVYRRIDGTT-SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 1414 (2240)
Q Consensus 1348 LIFSQ~t~~LDiLed~L~~rGiky~rLDGsT-s~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQ 1414 (2240)
||-|......+.|..+|...|+++..|+... ..+.-.++|.+ ++. .-.+-|+|..+|+|.|+.
T Consensus 428 LIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~--~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 428 LIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGR--KGSITIATNMAGRGTDII 491 (870)
T ss_pred EEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCC--CCcEEEeccccCCCcCee
Confidence 9999999999999999999999999999874 33444556654 222 234789999999997743
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-06 Score=116.14 Aligned_cols=76 Identities=18% Similarity=0.110 Sum_probs=60.7
Q ss_pred cCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHH
Q 000099 996 LRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (2240)
Q Consensus 996 L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (2240)
|.-..+||.|.+....+......+.++||-.+||+|||+.+|+..+......+...++++++.++ -+.|-.+|+.+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 33345799999999999999999999999999999999998887665554344445677777765 68888999888
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-06 Score=115.84 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccC
Q 000099 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGL 1411 (2240)
Q Consensus 1332 lLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGL 1411 (2240)
.+...|..+...+.++|||+....++..+.+.|....+.. ..-|... .|.+++++|+..+.. +|+.|....+||
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 4445555556678899999999999999988887665444 4445332 356799999874444 788899999999
Q ss_pred CCC--CCCeEEEcCCCC
Q 000099 1412 NLQ--SADTVIIYDPDP 1426 (2240)
Q Consensus 1412 NLQ--aADtVIifD~pW 1426 (2240)
|++ .+..||+.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 997 356678877664
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.1e-06 Score=110.76 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=79.0
Q ss_pred HhcCCeEEEEecchhHHHHHHHHHHhcCce-EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCC--CC
Q 000099 1341 QRTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--AD 1417 (2240)
Q Consensus 1341 ~atGhKVLIFSQ~t~~LDiLed~L~~rGik-y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQa--AD 1417 (2240)
...+.++|||+..-..|..+.++|...... .+...|... +..+++.|...... .||+.+....+|||++. +.
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCee
Confidence 445669999999999999999999877663 445556554 34899999875543 68999999999999997 68
Q ss_pred eEEEcCCCCC-hhh-----------------------------HHHHhhhhhccCCcceEEEE
Q 000099 1418 TVIIYDPDPN-PKN-----------------------------EEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1418 tVIifD~pWN-P~~-----------------------------d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
.|||.-.|+= |.. ..|++||+.|--..+-|.|+
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivl 613 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVL 613 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEE
Confidence 9999988874 432 44888888885544445444
|
|
| >cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-09 Score=110.59 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=72.4
Q ss_pred ccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----
Q 000099 1708 SENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ---- 1782 (2240)
Q Consensus 1708 ~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~---- 1782 (2240)
+.. +.++|++.. +.+||+++.+| .+|++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 5 ~~~-i~~~v~~~~-----~~~~~~~~~~F~~~p~~~~~pdYy~iIk~Pmdl~~-I~~kl~~~~Y~s~~~f~~D~~li~~N 77 (103)
T cd05519 5 MLE-IYDAVLNCE-----DETGRKLSELFLEKPSKKLYPDYYVIIKRPIALDQ-IKRRIEGRAYKSLEEFLEDFHLMFAN 77 (103)
T ss_pred HHH-HHHHHHHhc-----CcCCCchhHHhcCCCCCCCCcCHHHHcCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 445 677788887 66899999999 99999999999999999999999 9999999999999999999999
Q ss_pred ------CCCccccCCccccccccc
Q 000099 1783 ------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 ------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ .++..|+
T Consensus 78 a~~yn~~~s~i~-----~~A~~l~ 96 (103)
T cd05519 78 ARTYNQEGSIVY-----EDAVEME 96 (103)
T ss_pred HHHHCCCCCHHH-----HHHHHHH
Confidence 888888 6665554
|
SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.8e-05 Score=101.99 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=103.1
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..+..-+..+...|.-|||-|.....-++|...|..+|+++-.|+.... +.-.++|.+= +.. -.+-|+|
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~A--G~~--GaVTIAT 683 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEA--GQP--GTVTIAT 683 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhc--CCC--CcEEEec
Confidence 3457888888888888999999999999999999999999999999988887643 2223444432 222 2478999
Q ss_pred ccccccCCCC--------CCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1405 RAAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1405 rAGGeGLNLQ--------aADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
.-+|+|-|+. +-=+||.-..+-|...+.|..||++|-|.......| +++|+.+++
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~--lSLEDdLmr 746 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY--VSLEDNLMR 746 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE--EEcccHHHH
Confidence 9999999977 345889999999999999999999999988776554 345555544
|
|
| >cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I | Back alignment and domain information |
|---|
Probab=98.64 E-value=2e-09 Score=112.65 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=71.6
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+.+.+.+.. +++||+++++| .+|++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 10 il~~l~~~~-----~~~g~~l~~~F~~~p~~~~~PdYy~iI~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~lm~~Na~~y 83 (113)
T cd05524 10 LYDTIRNYK-----SEDGRILCESFIRVPKRRNEPEYYEVVSNPIDLLK-IQQKLKTEEYDDVDDLTADFELLINNAKAY 83 (113)
T ss_pred HHHHHHhhc-----ccCCCchhHHHhcCCCcccCCCHHHHhCCccCHHH-HHHHhCcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 556677777 66899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~ 1800 (2240)
+||.++ .++..|+
T Consensus 84 N~~~s~~~-----~~A~~L~ 98 (113)
T cd05524 84 YKPDSPEH-----KDACKLW 98 (113)
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 899998 8887777
|
Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine. |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.6e-05 Score=102.21 Aligned_cols=365 Identities=15% Similarity=0.194 Sum_probs=189.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~ 1073 (2240)
|...++-|+.|.--| +.|.|.-..||-|||+++ .+.+|+....+ ..+-||+++.-|. .|...+.+|+
T Consensus 83 G~r~ydVQliGgl~L------h~G~IAEM~TGEGKTL~a-tlpaylnAL~G--kgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 83 GMRHFDVQLIGGMVL------HEGQIAEMKTGEGKTLVA-TLPSYLNALTG--KGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCCcchhHHHhhhhh------cCCceeeecCCCChhHHH-HHHHHHHhhcC--CCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 434455588886544 346688899999999976 44555544333 3677888887663 4999999998
Q ss_pred CCCeEEEEecc--hhhHhHHHHHHHhhcCCcEEEEcHHHH-----HHhhh----hccccCcceEecccccccCCchhHHH
Q 000099 1074 PSVSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFI-----MYDRS----KLSKVDWKYIIIDEAQRMKDRESVLA 1142 (2240)
Q Consensus 1074 PslkVvvy~Gs--kdeRk~l~~qei~~~~fdVVITTYE~L-----~kD~s----~L~kikWd~VIIDEAHrLKN~~SKls 1142 (2240)
++.|.+..+. ...|+ .....+|+.+|-..| +.... ......+.++||||++.+.
T Consensus 154 -GLtvg~i~~~~~~~err-------~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL------- 218 (939)
T PRK12902 154 -GLSVGLIQQDMSPEERK-------KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL------- 218 (939)
T ss_pred -CCeEEEECCCCChHHHH-------HhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee-------
Confidence 5666555443 22222 234678888886544 33321 1233578999999999874
Q ss_pred HHhhccccceEEEeecCCCCCCHHHHHHHHhhh----cc------cc-cC----------Ch---HHHHhhhcCCcccCC
Q 000099 1143 RDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLL----LP------EV-FD----------NR---KAFHDWFSQPFQKEG 1198 (2240)
Q Consensus 1143 kaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFL----lP------~i-F~----------S~---~sF~e~F~kPf~~~g 1198 (2240)
+.. +..-|++||.+- ...++|...+-+ .+ +. |. +. ......|.. .+.
T Consensus 219 --IDE--ArTPLIISg~~~--~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i--~nL- 289 (939)
T PRK12902 219 --IDE--ARTPLIISGQVE--RPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGV--SDL- 289 (939)
T ss_pred --ecc--CCCcccccCCCc--cchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCc--hhh-
Confidence 222 223377888653 223444333222 11 10 00 00 000011100 000
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH-hhhhhhccCCCCceEEEEEeccC-------HHHHHHHHHHHHccCcc
Q 000099 1199 PTHNADDDWLETEKKVIIIHRLHQILEPFMLR-RRVEDVEGSLPPKVSIVLRCRMS-------AIQSAIYDWIKATGTLR 1270 (2240)
Q Consensus 1199 ~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR-RlKkDVekdLP~KvE~vV~c~LS-------~~Qr~LYk~L~~~~~l~ 1270 (2240)
..... ...+.+...|+...+. |-+.=|.. +....+|. ..| .+..-+.+.+.....+.
T Consensus 290 ----------y~~~~-~~~~~i~~AL~A~~lf~~d~dYiV~---dg~V~IVD-e~TGR~m~grrws~GLHQaIEaKE~v~ 354 (939)
T PRK12902 290 ----------FDPQD-PWAHYIFNALKAKELFIKDVNYIVR---NGEVVIVD-EFTGRVMPGRRWSDGLHQAIEAKEGVE 354 (939)
T ss_pred ----------cCccc-HHHHHHHHHHHHHHHHhcCCeEEEE---CCEEEEEE-CCCCCCCCCCccchHHHHHHHhhcCCC
Confidence 00000 1123333333333222 22111111 11111111 122 23344445554433332
Q ss_pred cCchhHHh------hhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCcccc-----chhhHhhcccHHHHHHHHHHH
Q 000099 1271 VDPEDEKR------RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIK 1339 (2240)
Q Consensus 1271 ld~~~e~~------~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~l-----s~d~LirsSGKLelLdrIL~k 1339 (2240)
+....... ..+.......+........-..|.++-+.+.+..|..... ..........|+..+..-+.+
T Consensus 355 it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~ 434 (939)
T PRK12902 355 IQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAE 434 (939)
T ss_pred CCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHH
Confidence 22111000 0000000000000111122345677766665544432211 111122335788888888888
Q ss_pred HHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCC-CCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCC
Q 000099 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT-TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQ 1414 (2240)
Q Consensus 1340 L~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGs-Ts~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQ 1414 (2240)
+.+.|..|||-|......+.|...|...|+++..|+.. ...+.-.++|.+= +.. --+-|+|..+|+|-|+.
T Consensus 435 ~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A--G~~--GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 435 MHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA--GRK--GAVTIATNMAGRGTDII 506 (939)
T ss_pred HHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--CCC--CcEEEeccCCCCCcCEe
Confidence 88999999999999999999999999999999999986 3334445566542 222 24789999999996643
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.8e-06 Score=106.72 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=104.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~--Psl 1076 (2240)
..-.+|.+-+. ....+...+|..++-.|||......|...++ ....+-++.|+|+. ++.|-..++...+ +.+
T Consensus 511 ~Pd~WQ~elLD----svDr~eSavIVAPTSaGKTfisfY~iEKVLR-esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~ 585 (1330)
T KOG0949|consen 511 CPDEWQRELLD----SVDRNESAVIVAPTSAGKTFISFYAIEKVLR-ESDSDVVIYVAPTKALVNQVSANVYARFDTKTF 585 (1330)
T ss_pred CCcHHHHHHhh----hhhcccceEEEeeccCCceeccHHHHHHHHh-hcCCCEEEEecchHHHhhhhhHHHHHhhccCcc
Confidence 34457877664 3344667888999999999998888877665 45667899999966 5666555554433 332
Q ss_pred eEE-EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---ccc--cCcceEecccccccCCch-hHHHHHhhccc
Q 000099 1077 SCI-YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSK--VDWKYIIIDEAQRMKDRE-SVLARDLDRYR 1149 (2240)
Q Consensus 1077 kVv-vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L~k--ikWd~VIIDEAHrLKN~~-SKlskaLk~Lk 1149 (2240)
... ...|.-.. ...+..-+..|+||-++.+-...-. -.+ -+..|||+||.|.+.|.. ..++..+-.+-
T Consensus 586 ~rg~sl~g~ltq-----EYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li 660 (1330)
T KOG0949|consen 586 LRGVSLLGDLTQ-----EYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI 660 (1330)
T ss_pred ccchhhHhhhhH-----HhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc
Confidence 221 12221110 0112234778999999987543211 111 156899999999998854 45565555554
Q ss_pred cceEEEeecCCCCCCHHHHHHHHh
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLN 1173 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLn 1173 (2240)
.--.|+|||| .+++..+...++
T Consensus 661 ~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 661 PCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred CCCeeEEecc--cCCHHHHHHHHH
Confidence 4457899999 577777777776
|
|
| >cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.3e-09 Score=106.62 Aligned_cols=78 Identities=15% Similarity=0.061 Sum_probs=68.2
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
..+.|.+.. +++|++++.+| .+|++..+||||.+|++||||++ |..+|..|+|.++.++..|+.+
T Consensus 9 i~~~v~~~~-----d~~g~~l~~~F~~~p~~~~~pdYy~~I~~Pmdl~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 9 ILKGLRKER-----DENGRLLTLHFEKLPDKAREPEYYQEISNPISLDD-IKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHh-----CcCCCcccHHHhcCCCccccCcHHHHhCCCcCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344566666 56899999999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccccCCccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ .++..|+
T Consensus 83 n~~~s~i~-----~~A~~l~ 97 (104)
T cd05522 83 NENDSQEY-----KDAVLLE 97 (104)
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 888888 6655543
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.2e-09 Score=107.06 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=69.3
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+.+.+.+.. +.+|++++++| .+|+++.|||||.+|++||||++ |..+|+. |.++.++..|+.+
T Consensus 9 l~~~i~~~~-----~~~g~~~~~~F~~lp~~~~~pdYy~iI~~PmdL~t-I~~kl~~--Y~s~~ef~~D~~li~~Na~~y 80 (106)
T cd05521 9 LYDGIYTLK-----EENGIEIHPIFNVLPLRKDYPDYYKIIKNPLSLNT-VKKRLPH--YTNAQEFVNDLAQIPWNARLY 80 (106)
T ss_pred HHHHHHhhc-----CcCCCCchHhhhcCCccccCccHHHHhcCCCCHHH-HHHHHHc--CCCHHHHHHHHHHHHHHHHHH
Confidence 666788887 56799999999 99999999999999999999999 9999998 9999999999999
Q ss_pred --CCCccccCCccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~ 1800 (2240)
+||+++ .++..|.
T Consensus 81 N~~~s~i~-----~~A~~le 95 (106)
T cd05521 81 NTKGSVIY-----KYALILE 95 (106)
T ss_pred cCCCCHHH-----HHHHHHH
Confidence 999999 7776665
|
Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-06 Score=115.42 Aligned_cols=78 Identities=17% Similarity=0.102 Sum_probs=52.4
Q ss_pred cCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchhHHHHHhhcc----ccceEEEeecCCCCC--CHHHHHH
Q 000099 1099 LKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGTPLQN--DLKELWS 1170 (2240)
Q Consensus 1099 ~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L----ks~~RLLLTGTPLQN--nL~ELwS 1170 (2240)
....|++.|...+..|. ..+.--.+..|||||||++... +.-.-.+..| +..+..++|+.|-.. ....|-.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~-~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~ 84 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIES-SQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLET 84 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeeccccccc-ccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHH
Confidence 45679999999998874 3344457889999999999643 3333334444 345689999999763 3455555
Q ss_pred HHhhhcc
Q 000099 1171 LLNLLLP 1177 (2240)
Q Consensus 1171 LLnFLlP 1177 (2240)
++.-|.-
T Consensus 85 vmk~L~i 91 (814)
T TIGR00596 85 KMRNLFL 91 (814)
T ss_pred HHHHhCc
Confidence 5555533
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.6e-05 Score=100.34 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-CceEEeecCCCCHHHHHHHHHHHhc----CCCCccEEEEec
Q 000099 1330 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNS----HDSDCFIFLLSI 1404 (2240)
Q Consensus 1330 LelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-Giky~rLDGsTs~eEReeaIk~FNs----~Ds~~fVfLLST 1404 (2240)
...+.+.|..+...+.++|||+.....++.+.+.|... ++. +.+.|. ..|..+++.|.. ++. .+|+++
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~---~VL~g~ 592 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEG---SVLFGL 592 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCC---eEEEEe
Confidence 33455555555556667899998888899888888643 333 334554 257788887764 222 378888
Q ss_pred ccccccCCCCC--CCeEEEcCCCC
Q 000099 1405 RAAGRGLNLQS--ADTVIIYDPDP 1426 (2240)
Q Consensus 1405 rAGGeGLNLQa--ADtVIifD~pW 1426 (2240)
....+|||+++ +..|||.-.|+
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCC
Confidence 99999999986 79999998886
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-06 Score=108.86 Aligned_cols=140 Identities=23% Similarity=0.238 Sum_probs=92.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~Kw~Pslk 1077 (2240)
.+|-|+|..++.- ..++...++..-|-.|||++|-..|+.-+..+ .+++.-.|-..|+| =.+||..-|.++-
T Consensus 128 F~LDpFQ~~aI~C----idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKC----IDRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred cccCchHhhhhhh----hcCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 4899999999854 44577889999999999999877776655433 36777778666655 4677776554432
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh----hhhccccCcceEecccccccCCchhH--HHHHhhccc-c
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDWKYIIIDEAQRMKDRESV--LARDLDRYR-C 1150 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD----~s~L~kikWd~VIIDEAHrLKN~~SK--lskaLk~Lk-s 1150 (2240)
..+|... ...+...+|+|-+.|+.. .+.+..+.| ||+||.|+|+...-. +-..+.-+. .
T Consensus 201 --LMTGDVT----------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 201 --LMTGDVT----------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred --eeeccee----------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEecccc
Confidence 2333221 123456889998888654 345555555 999999999864322 222333343 3
Q ss_pred ceEEEeecC
Q 000099 1151 QRRLLLTGT 1159 (2240)
Q Consensus 1151 ~~RLLLTGT 1159 (2240)
-+.++||||
T Consensus 267 vr~VFLSAT 275 (1041)
T KOG0948|consen 267 VRFVFLSAT 275 (1041)
T ss_pred ceEEEEecc
Confidence 456889999
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.31 E-value=4.4e-05 Score=102.36 Aligned_cols=105 Identities=21% Similarity=0.269 Sum_probs=76.8
Q ss_pred CCeEEEEecchhHHHHHHHHHHh----cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE
Q 000099 1344 GHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1344 GhKVLIFSQ~t~~LDiLed~L~~----rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
..-+|||-.-....+.+.+.|.. ..+.++-|+|.++.++..++ |+......+-+++||.++.++|.+.++.+|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45689999888888877777776 45778899999999887764 554333435489999999999999999988
Q ss_pred E--------EcCCCC----------ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1420 I--------IYDPDP----------NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1420 I--------ifD~pW----------NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
| .||+-- +-+...||-|||+|.+ +=.+|+|.+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLys 385 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYS 385 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecC
Confidence 7 333322 3334567778777755 556677765
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.3e-05 Score=101.71 Aligned_cols=112 Identities=17% Similarity=0.262 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccc
Q 000099 1330 LWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1409 (2240)
Q Consensus 1330 LelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGe 1409 (2240)
...+..|+..| ..|++|.|||......+++++++.....+++.++|..+..+. +.+. ++.| |+=|.+...
T Consensus 269 ~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W~----~~~V-viYT~~itv 338 (824)
T PF02399_consen 269 TTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESWK----KYDV-VIYTPVITV 338 (824)
T ss_pred hhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cccc----ceeE-EEEeceEEE
Confidence 34444555544 579999999999999999999999999999999998776633 3343 4555 555577788
Q ss_pred cCCCCC--CCeEEEc--CCCCChhh--HHHHhhhhhccCCcceEEEEEE
Q 000099 1410 GLNLQS--ADTVIIY--DPDPNPKN--EEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1410 GLNLQa--ADtVIif--D~pWNP~~--d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
||++-. .|.|+.| .....|.. ..|.+||+..+. ++++.||.-
T Consensus 339 G~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 339 GLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYID 386 (824)
T ss_pred EeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEe
Confidence 999875 4666666 43344554 699999998887 567777654
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.3e-05 Score=101.50 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEEecchhHHHHHHHHHHh----c---CceEEeecCCCCHHHHHHHHHHHhcCCCCccE
Q 000099 1329 KLWILDRILIKLQRT--GHRVLLFSTMTKLLDILEEYLQW----R---QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFI 1399 (2240)
Q Consensus 1329 KLelLdrIL~kL~at--GhKVLIFSQ~t~~LDiLed~L~~----r---Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fV 1399 (2240)
...++..++..+... ...||||-.-...+..+.+.|.. . .+-+..+|+.++..+.+.+ |+.+-.+++-
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 445555555555433 46899999888877777777753 2 2567789999998776654 6666666777
Q ss_pred EEEecccccccCCCCCCCeEE--------EcCCC---------C-ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1400 FLLSIRAAGRGLNLQSADTVI--------IYDPD---------P-NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1400 fLLSTrAGGeGLNLQaADtVI--------ifD~p---------W-NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+|++|..+...|.+.++-+|| .||+- | +-..-.||.|||+|.- +=.+|++++
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~---~G~cy~L~~ 542 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR---PGICYHLYT 542 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc---CCeeEEeec
Confidence 999999999999999877775 34443 3 4455679999998854 335566544
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.7e-05 Score=104.50 Aligned_cols=154 Identities=20% Similarity=0.133 Sum_probs=91.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~Kw~P--sl 1076 (2240)
.|+++|.+++.- .....+.|.|.+.+++-|||+++=.+++...- -..+.+|+|.|--.+.+ -..++..+.- ++
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l--~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~ 298 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVL--CRRRNVLLILPYVSIVQEKISALSPFSIDLGF 298 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHH--HHhhceeEecceeehhHHHHhhhhhhccccCC
Confidence 578888888742 22236778899999999999887655543321 22345788888554433 3344444432 35
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccc----cCcceEecccccccCC--chhH----HHHHhh
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSK----VDWKYIIIDEAQRMKD--RESV----LARDLD 1146 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~k----ikWd~VIIDEAHrLKN--~~SK----lskaLk 1146 (2240)
.+-.|.|.-.. ......-.|.|+|.+.-......|.. ....+|||||-|-+.. .+.- +.+.+.
T Consensus 299 ~ve~y~g~~~p-------~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y 371 (1008)
T KOG0950|consen 299 PVEEYAGRFPP-------EKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILY 371 (1008)
T ss_pred cchhhcccCCC-------CCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHH
Confidence 55556653211 11223457999999877665444322 2467999999999854 2222 233332
Q ss_pred ccccc--eEEEeecCCCCCC
Q 000099 1147 RYRCQ--RRLLLTGTPLQND 1164 (2240)
Q Consensus 1147 ~Lks~--~RLLLTGTPLQNn 1164 (2240)
.-... ..+++|||-.++.
T Consensus 372 ~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 372 ENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred hccccceeEeeeecccCChH
Confidence 22222 3799999964443
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=7e-06 Score=110.29 Aligned_cols=171 Identities=18% Similarity=0.190 Sum_probs=106.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-HHHH---------HHHHHCCC--CeEEEEecch--
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-NWKS---------ELHKWLPS--VSCIYYVGAK-- 1085 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-QW~~---------Ef~Kw~Ps--lkVvvy~Gsk-- 1085 (2240)
++..+.++||+|||.+++.+|.+|....+ ...+|||||..-+. -... -|...+.+ +...+|...+
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 46788999999999999999999886444 57899999975432 2221 12333333 4445555432
Q ss_pred -hhHhH---HHHHHHhhc-----CCcEEEEcHHHHHHhhh--h----c--cc--cCc-------ceEecccccccCCchh
Q 000099 1086 -DQRSR---LFSQEVAAL-----KFNVLVTTYEFIMYDRS--K----L--SK--VDW-------KYIIIDEAQRMKDRES 1139 (2240)
Q Consensus 1086 -deRk~---l~~qei~~~-----~fdVVITTYE~L~kD~s--~----L--~k--ikW-------d~VIIDEAHrLKN~~S 1139 (2240)
..|.. .+..-.... ..+|+|+|.+.|.++.. . + .. ..| -+||+||.|++.. ..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~~ 217 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-DN 217 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-ch
Confidence 11111 011111122 57899999999876421 0 1 11 122 3799999999954 34
Q ss_pred HHHHHhhccccceEEEeecCCCC-------C--CHHHHHHHHhhhcccccCChHHHHhhhcCCcccC
Q 000099 1140 VLARDLDRYRCQRRLLLTGTPLQ-------N--DLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKE 1197 (2240)
Q Consensus 1140 KlskaLk~Lks~~RLLLTGTPLQ-------N--nL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~ 1197 (2240)
+.+.++..++..+.|..|||=-. | .-.+.++++.-| +..++|...+.+-+...
T Consensus 218 k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~L-----davdAyn~~LVK~I~V~ 279 (986)
T PRK15483 218 KFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFDL-----NAVDSFNDGLVKGVDIF 279 (986)
T ss_pred HHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceeec-----CHHHHHHhCCcceEEEe
Confidence 56788899999999999999532 0 112345554433 55788888887766654
|
|
| >cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.7e-07 Score=92.69 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=39.0
Q ss_pred CccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCC
Q 000099 1984 NILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFS 2024 (2240)
Q Consensus 1984 ~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~ 2024 (2240)
-||||.+|++||.++.|.+.++|++|+.|||+||++||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 37999999999999999999999999999999999999774
|
TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00025 Score=91.36 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=72.5
Q ss_pred eEEEEecchhHHHHHHHHHHhc----Cc----eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCC
Q 000099 1346 RVLLFSTMTKLLDILEEYLQWR----QL----VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1417 (2240)
Q Consensus 1346 KVLIFSQ~t~~LDiLed~L~~r----Gi----ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaAD 1417 (2240)
-+|||-.-.+..+.+++.|... +- .++-++|+++.++..++ |......++-+++||..+.+.|.+.+.-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 5888887777666666666544 21 24678999999886554 5554556778999999999999999988
Q ss_pred eEE--------EcCCCC-------ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1418 TVI--------IYDPDP-------NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1418 tVI--------ifD~pW-------NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+|| .|++-- -|..-.||.-|++|.|.+.+..+|||.+
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYt 388 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYT 388 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeee
Confidence 875 343311 1123345555666666677888888876
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.4e-05 Score=85.43 Aligned_cols=126 Identities=21% Similarity=0.177 Sum_probs=70.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcC
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~ 1100 (2240)
--+|-.-+|.|||..++--+.. +.-...+++||+.|+.++. +|+.+.+.+..+.+ .-.--.+ ...+.
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~--~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~~~-~t~~~~~-------~~~g~ 72 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVR--EAIKRRLRVLVLAPTRVVA---EEMYEALKGLPVRF-HTNARMR-------THFGS 72 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHH--HHHHTT--EEEEESSHHHH---HHHHHHTTTSSEEE-ESTTSS-----------SS
T ss_pred eeEEecCCCCCCcccccHHHHH--HHHHccCeEEEecccHHHH---HHHHHHHhcCCccc-Cceeeec-------cccCC
Confidence 3477788999999887654332 2223456899999999764 45555555554322 2211111 12355
Q ss_pred CcEEEEcHHHHHHhh-hhccccCcceEecccccccCCchhHHHHHh-hccc-c--ceEEEeecCC
Q 000099 1101 FNVLVTTYEFIMYDR-SKLSKVDWKYIIIDEAQRMKDRESVLARDL-DRYR-C--QRRLLLTGTP 1160 (2240)
Q Consensus 1101 fdVVITTYE~L~kD~-s~L~kikWd~VIIDEAHrLKN~~SKlskaL-k~Lk-s--~~RLLLTGTP 1160 (2240)
.-|-++||.++.+.. ......+|++||+||||-. ++.+-..+.+ ..+. . ...|++||||
T Consensus 73 ~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 73 SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred CcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 678889998876542 3344468999999999985 4555443332 2331 1 3589999999
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0017 Score=88.08 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=35.9
Q ss_pred CccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1396 ~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
+..+++|+|.+...|+|+. +|.+|.- +-.....+|+.||+.|-|+..
T Consensus 837 ~~~~i~v~Tqv~E~g~D~d-fd~~~~~--~~~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 837 NHLFIVLATPVEEVGRDHD-YDWAIAD--PSSMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CCCeEEEEeeeEEEEeccc-CCeeeec--cCcHHHHHHHhhcccccccCC
Confidence 4567899999999999975 5555532 224567899999999999764
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0038 Score=80.27 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=67.3
Q ss_pred eEEEEecchhHHHHHHHHHH----hc-----CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCC
Q 000099 1346 RVLLFSTMTKLLDILEEYLQ----WR-----QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 1416 (2240)
Q Consensus 1346 KVLIFSQ~t~~LDiLed~L~----~r-----Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaA 1416 (2240)
-+|||-.-.+..+..++.|. .. .+-++-|+.+.+.+...++ |...-.+++-++|+|..+.+.|.+.++
T Consensus 475 DILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI 551 (902)
T KOG0923|consen 475 DILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGI 551 (902)
T ss_pred cEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCe
Confidence 46777655544444333333 22 3457778999998876655 443233456789999999999999998
Q ss_pred CeEEEcCCCC--------------------ChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1417 DTVIIYDPDP--------------------NPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1417 DtVIifD~pW--------------------NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
.+|| ||-+ +-+.-.||.|||+|.|-.|..++|.
T Consensus 552 ~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt 604 (902)
T KOG0923|consen 552 KYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYT 604 (902)
T ss_pred EEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeec
Confidence 8886 3332 2345679999999988776655554
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.97 E-value=7e-05 Score=90.44 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechH-HHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNA-VLVNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~---~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (2240)
+.||.|++-+..+...+.++.++|+-.+||+|||+.++..+.......+. ..++++++++. ++.+-..++.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999999999999889999999999999999988876543332222 13677777765 444545555543
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.97 E-value=7e-05 Score=90.44 Aligned_cols=73 Identities=16% Similarity=0.114 Sum_probs=53.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC---CCCeEEEechH-HHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN---YGPHLIIVPNA-VLVNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~---~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (2240)
+.||.|++-+..+...+.++.++|+-.+||+|||+.++..+.......+. ..++++++++. ++.+-..++.+.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 56999999999999999889999999999999999988876543332222 13677777765 444545555543
|
|
| >cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.1e-06 Score=90.36 Aligned_cols=58 Identities=12% Similarity=0.136 Sum_probs=53.7
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
+..+.+| ..++...+||||.+|++||||++ |.++|+.|+|.++.+...|+.+ ++|+++
T Consensus 17 ~~~s~~F~~PV~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN~~~s~i~ 85 (99)
T cd05508 17 QPGAEPFLKPVDLEQFPDYAQYVFKPMDLST-LEKNVRKKAYGSTDAFLADAKWILHNAIIYNGGDHKLT 85 (99)
T ss_pred CcCcchhcCCCChhhCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4568889 88889999999999999999999 9999999999999999999999 788777
|
RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.5e-06 Score=89.15 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=52.4
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
.+.+| .+|++..+||||.+|++||||++ |..+|+.|+|.++.+...|+.+ +||+|+
T Consensus 17 ~s~~F~~pv~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~ 83 (97)
T cd05505 17 FSWPFREPVTADEAEDYKKVITNPMDLQT-MQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENGSYVL 83 (97)
T ss_pred CcccccCCCChhhcccHHHHcCCcCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45688 88899999999999999999999 9999999999999999999999 888887
|
The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.9e-05 Score=95.64 Aligned_cols=76 Identities=11% Similarity=0.013 Sum_probs=64.9
Q ss_pred hccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHH
Q 000099 1954 IEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARK 2033 (2240)
Q Consensus 1954 ~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~ 2033 (2240)
+++.|+.=. .|.-...|.|--+ |++|.|..|...|+..++|.+ -+|..|+.||+-||++||+++.-.|+.|++
T Consensus 223 ~~p~~~lny-----g~tas~aP~YSm~-Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyelank 295 (418)
T KOG1828|consen 223 VDPVAYLNY-----GPTASFAPGYSMT-ITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYELANK 295 (418)
T ss_pred cCchhhhcc-----cchhhhccccccc-ccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHHHHh
Confidence 356665433 3444558999655 999999999999999999999 999999999999999999999999999998
Q ss_pred HHH
Q 000099 2034 VHD 2036 (2240)
Q Consensus 2034 L~~ 2036 (2240)
+.-
T Consensus 296 ~lh 298 (418)
T KOG1828|consen 296 QLH 298 (418)
T ss_pred hhh
Confidence 765
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=95.90 Aligned_cols=166 Identities=18% Similarity=0.154 Sum_probs=103.3
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH--------HHHHH-HHHCCCCeEEEEecc
Q 000099 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN--------WKSEL-HKWLPSVSCIYYVGA 1084 (2240)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q--------W~~Ef-~Kw~PslkVvvy~Gs 1084 (2240)
.++...+|+=+-+|||+|||.+.+-+|..|....| .-.++||||.-.+.- -.+.| ..++.+.+.-.|.-.
T Consensus 69 ~~~~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG-~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~ 147 (985)
T COG3587 69 VRIDDKLNIDILMETGTGKTYTYLRTMFELHKKYG-LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYD 147 (985)
T ss_pred ccCCCcceeeEEEecCCCceeeHHHHHHHHHHHhC-ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeec
Confidence 34556677778899999999999999988876554 348899999653321 12233 334443333222222
Q ss_pred hhhHhHHHHHHHhhcCCcEEEEcHHHHHHh---hhh---------------------ccccCcceEecccccccCCchhH
Q 000099 1085 KDQRSRLFSQEVAALKFNVLVTTYEFIMYD---RSK---------------------LSKVDWKYIIIDEAQRMKDRESV 1140 (2240)
Q Consensus 1085 kdeRk~l~~qei~~~~fdVVITTYE~L~kD---~s~---------------------L~kikWd~VIIDEAHrLKN~~SK 1140 (2240)
....... ........|+|.+...+.++ ... |... --+|||||-|++... .+
T Consensus 148 ~~~~~~~---~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~-rPIvIvDEPh~f~~~-~k 222 (985)
T COG3587 148 EDIEKFK---FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASM-RPIVIVDEPHRFLGD-DK 222 (985)
T ss_pred hHHHHHh---hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhc-CCEEEecChhhcccc-hH
Confidence 2111111 12345667889988888766 111 1111 137999999999865 78
Q ss_pred HHHHhhccccceEEEeecCCCCCCHHHHHH-HHhhhcccccCChHHHHhhhcCCcc
Q 000099 1141 LARDLDRYRCQRRLLLTGTPLQNDLKELWS-LLNLLLPEVFDNRKAFHDWFSQPFQ 1195 (2240)
Q Consensus 1141 lskaLk~Lks~~RLLLTGTPLQNnL~ELwS-LLnFLlP~iF~S~~sF~e~F~kPf~ 1195 (2240)
.+.++..++....|=.+||= .+-|. ++- .+++.+.|...+.+.+.
T Consensus 223 ~~~~i~~l~pl~ilRfgATf-----kd~y~~l~y-----rLDsi~Af~~~LVK~I~ 268 (985)
T COG3587 223 TYGAIKQLNPLLILRFGATF-----KDEYNNLVY-----RLDSIDAFNQKLVKQIR 268 (985)
T ss_pred HHHHHHhhCceEEEEecccc-----hhhhcCeeE-----EeeHHhhhhhhhhhhee
Confidence 89999999998888888882 23332 221 23556777776665544
|
|
| >cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.3e-06 Score=92.54 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=56.8
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C-CCccccCCcccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~-~Sw~~~~~~~~d~~~~ 1799 (2240)
.+.+| .+++...|||||.+|++||||++ |.++|+.|.|.++.++..|+.+ + ||+|+ .++..|
T Consensus 22 ~s~~F~~PVd~~~~pdY~~iIk~PmDL~t-Ik~kL~~~~Y~~~~ef~~D~~lif~Na~~yN~~~~s~i~-----~~a~~L 95 (119)
T cd05496 22 DSEPFRQPVDLLKYPDYRDIIDTPMDLGT-VKETLFGGNYDDPMEFAKDVRLIFSNSKSYTPNKRSRIY-----SMTLRL 95 (119)
T ss_pred ccccccCCCChhhcCcHHHHhCCcccHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 46788 88898999999999999999999 9999999999999999999999 3 89998 776665
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 96 ~ 96 (119)
T cd05496 96 S 96 (119)
T ss_pred H
Confidence 5
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.7e-06 Score=90.21 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=56.8
Q ss_pred Cccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccc
Q 000099 1729 SRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGED 1795 (2240)
Q Consensus 1729 ~r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d 1795 (2240)
.+..+.+| .+++.. .+||||.+|++||||++ |..+|+.|+|.++.+...|+.+ +||+++ ..
T Consensus 19 ~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~ 92 (107)
T cd05497 19 KHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGT-IKKRLENNYYWSASECIQDFNTMFTNCYIYNKPGDDVV-----LM 92 (107)
T ss_pred hCCcCccccCCCCcccccCCcHHHHHcCcccHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HH
Confidence 35668889 666655 69999999999999999 9999999999999999999999 899988 65
Q ss_pred ccccc
Q 000099 1796 EQVLQ 1800 (2240)
Q Consensus 1796 ~~~~~ 1800 (2240)
+..|+
T Consensus 93 A~~l~ 97 (107)
T cd05497 93 AQTLE 97 (107)
T ss_pred HHHHH
Confidence 55554
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=83.02 Aligned_cols=68 Identities=25% Similarity=0.299 Sum_probs=48.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHH-----HhCCCCCeEEEechH-HHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLME-----FKGNYGPHLIIVPNA-VLVNWKSELHK 1071 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lle-----~kg~~GP~LIVVP~S-LL~QW~~Ef~K 1071 (2240)
+|-+.|.+++..++. ... .++..+.|+|||.+...++..++. .....+++||++|+. .+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 377899999977764 444 789999999999888888887742 245667899999965 67777777776
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00024 Score=94.23 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=85.2
Q ss_pred CchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecch--hhHhHHHHHHHhhcCCcEEE
Q 000099 1029 GLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAK--DQRSRLFSQEVAALKFNVLV 1105 (2240)
Q Consensus 1029 GLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkVvvy~Gsk--deRk~l~~qei~~~~fdVVI 1105 (2240)
|+|||-..+.+|...+.. .+.+||+||.. ++.++...|...|+...+.+|+... .+|.+.|. .+..+...|||
T Consensus 170 GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~-~~~~G~~~IVi 245 (665)
T PRK14873 170 GEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWL-AVLRGQARVVV 245 (665)
T ss_pred CCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHH-HHhCCCCcEEE
Confidence 999999999999887752 34699999965 7899999999999867788888753 44444443 35567789999
Q ss_pred EcHHHHHHhhhhccccCcceEeccccccc--CCchhHH-----HHHhh-ccccceEEEeecCC
Q 000099 1106 TTYEFIMYDRSKLSKVDWKYIIIDEAQRM--KDRESVL-----ARDLD-RYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1106 TTYE~L~kD~s~L~kikWd~VIIDEAHrL--KN~~SKl-----skaLk-~Lks~~RLLLTGTP 1160 (2240)
.|...+. +.--+..+|||||=|.- |...... ...+. .+..-..|+-|+||
T Consensus 246 GtRSAvF-----aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTP 303 (665)
T PRK14873 246 GTRSAVF-----APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHAR 303 (665)
T ss_pred EcceeEE-----eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCC
Confidence 9997652 23336789999998864 3322111 11111 22333467779999
|
|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.8e-06 Score=111.22 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=75.0
Q ss_pred hhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHH
Q 000099 1962 VPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDL 2041 (2240)
Q Consensus 1962 ~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~ 2041 (2240)
++.|......+..|+||.+ |++||||.+|.+++..-+|.+..||..||.+++-||..||+..+..-.-|+++-.+-...
T Consensus 1400 s~~f~~~v~~k~~~~yy~k-ik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y~~k~~k~~ev~~~~ 1478 (1563)
T KOG0008|consen 1400 SWPFHEPVNKKRVPDYYKK-IKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAYTKKARKIGEVGLAN 1478 (1563)
T ss_pred hcccccccchhhchHHHHH-hcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccccHHHHHHHHHHHHH
Confidence 5789999999999999999 999999999999999999999999999999999999999999998888888777766655
Q ss_pred HHHh
Q 000099 2042 LKIA 2045 (2240)
Q Consensus 2042 ~k~~ 2045 (2240)
+...
T Consensus 1479 ~~e~ 1482 (1563)
T KOG0008|consen 1479 LLEY 1482 (1563)
T ss_pred HHHH
Confidence 5543
|
|
| >cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.7e-06 Score=87.45 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=53.3
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
+..+.+| ..+++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|.++
T Consensus 16 ~~~~~~F~~pVd~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~ 84 (98)
T cd05512 16 KDTAEIFSEPVDLSEVPDYLDHIKQPMDFST-MRKKLESQRYRTLEDFEADFNLIINNCLAYNAKDTIFY 84 (98)
T ss_pred CCCchhhcCCCCccccCCHHHHhcCCcCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4556778 88888999999999999999999 9999999999999999999999 888887
|
BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00094 Score=85.50 Aligned_cols=81 Identities=17% Similarity=0.119 Sum_probs=55.9
Q ss_pred CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCC----CCh--------------h
Q 000099 1368 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD----PNP--------------K 1429 (2240)
Q Consensus 1368 Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~p----WNP--------------~ 1429 (2240)
++.++-|...++.+-..+ -|.....+++-++++|..+.+.|.+++.-+||-.... +|| +
T Consensus 597 ~L~vlpiYSQLp~dlQ~k---iFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAK---IFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhh---hcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 567778888888766554 4665566778899999999999999998888743211 233 2
Q ss_pred hHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1430 NEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1430 ~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.-.||.|||+| +.+-..|++.|
T Consensus 674 nA~QRaGRAGR---t~pG~cYRlYT 695 (1042)
T KOG0924|consen 674 NADQRAGRAGR---TGPGTCYRLYT 695 (1042)
T ss_pred cchhhccccCC---CCCcceeeehh
Confidence 33455555555 55667788865
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0057 Score=81.89 Aligned_cols=130 Identities=16% Similarity=0.196 Sum_probs=97.1
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..+..-+.++..+|..|||.+.....-+.+...|...|++...|+-.-. .|+.-|-.+- +. .-.+-++|
T Consensus 410 t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A-G~--~gaVTiAT 484 (822)
T COG0653 410 TEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA-GQ--PGAVTIAT 484 (822)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc-CC--CCcccccc
Confidence 3456888888888888999999999999999999999999999999988887765 4444343333 22 22467899
Q ss_pred ccccccCCCCC-CC----------eEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhh
Q 000099 1405 RAAGRGLNLQS-AD----------TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461 (2240)
Q Consensus 1405 rAGGeGLNLQa-AD----------tVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s 1461 (2240)
.-+|+|-|+.- .+ +||=-...-+-..+.|-.||++|.|-...-. + +.+.++.+.+
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~-F-~lSleD~L~r 550 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSR-F-YLSLEDDLMR 550 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhh-h-hhhhHHHHHH
Confidence 99999999874 32 5677777788888899999999999443332 2 2344544433
|
|
| >cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily | Back alignment and domain information |
|---|
Probab=97.76 E-value=3e-06 Score=86.75 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=56.2
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+++...+|+||.+|++||||.+ |..+|+.|+|.+..+...|+.+ ++|.++ .++..|
T Consensus 16 ~~~~~F~~pv~~~~~p~Y~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~a~~l 89 (97)
T cd05503 16 EDAWPFLEPVNTKLVPGYRKIIKKPMDFST-IREKLESGQYKTLEEFAEDVRLVFDNCETFNEDDSEVG-----RAGHNM 89 (97)
T ss_pred CCchhhcCCCCccccCCHHHHhCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 355678 88888999999999999999999 9999999999999999999999 788877 666555
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 90 ~ 90 (97)
T cd05503 90 R 90 (97)
T ss_pred H
Confidence 4
|
Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup | Back alignment and domain information |
|---|
Probab=97.74 E-value=3.7e-06 Score=87.18 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=52.4
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
...+.+| ..++...+|+||.+|++||||++ |.++|+.|+|.++.+...|+.+ ++|.++
T Consensus 18 ~~~a~~F~~pV~~~~~p~Y~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~v~ 86 (104)
T cd05507 18 HRYASVFLKPVTEDIAPGYHSVVYRPMDLST-IKKNIENGTIRSTAEFQRDVLLMFQNAIMYNSSDHDVY 86 (104)
T ss_pred CCCCHhhcCCCCccccCCHHHHhCCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4457788 88888999999999999999999 9999999999999999999998 667666
|
In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05499 Bromo_BDF1_2_II Bromodomain | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.5e-06 Score=86.07 Aligned_cols=66 Identities=15% Similarity=0.217 Sum_probs=57.3
Q ss_pred Cccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccc
Q 000099 1729 SRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGED 1795 (2240)
Q Consensus 1729 ~r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d 1795 (2240)
.+.++.+| .+|+.. .+|+||.+|++||||+. |..+|+.|+|.++.+...|+.+ ++|.++ ..
T Consensus 17 ~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~-I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn~~~s~~~-----~~ 90 (102)
T cd05499 17 HSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGT-ISKKLQNGQYQSAKEFERDVRLIFKNCYTFNPEGTDVY-----MM 90 (102)
T ss_pred CCcccchhcCCCCccccCCCCHHHHhcCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HH
Confidence 35678899 777766 99999999999999999 9999999999999999999998 788777 55
Q ss_pred ccccc
Q 000099 1796 EQVLQ 1800 (2240)
Q Consensus 1796 ~~~~~ 1800 (2240)
+..|+
T Consensus 91 a~~l~ 95 (102)
T cd05499 91 GHQLE 95 (102)
T ss_pred HHHHH
Confidence 55544
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup | Back alignment and domain information |
|---|
Probab=97.69 E-value=5.4e-06 Score=85.30 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=51.8
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
..+.+| ..++...+|+||.+|++||||++ |..+|+.|+|.++.+..+|+.+ ++|+++
T Consensus 17 ~~~~~F~~PV~~~~~pdY~~vIk~PmDL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~ 84 (98)
T cd05513 17 DPHGFFAFPVTDFIAPGYSSIIKHPMDFST-MKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKPDTIYY 84 (98)
T ss_pred CccccccCcCCccccccHHHHHcCccCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 346788 66678889999999999999999 9999999999999999999998 888887
|
The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.7e-06 Score=86.99 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=55.8
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C----CCccccCCccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S----GSWTHDRDEGEDE 1796 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~----~Sw~~~~~~~~d~ 1796 (2240)
.+.+| ..|+...+||||.+|++||||++ |..+|+.|+|.++.+...|+.+ + ||||+ .++
T Consensus 20 ~~~~F~~pv~~~~~pdY~~vI~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~s~i~-----~~A 93 (112)
T cd05528 20 RFNAFTKPVDEEEVPDYYEIIKQPMDLQT-ILQKLDTHQYLTAKDFLKDIDLIVTNALEYNPDRDPADKLIR-----SRA 93 (112)
T ss_pred CchhhcCCCCccccCcHHHHHcCCCCHHH-HHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCCCCCccccHHH-----HHH
Confidence 34678 88999999999999999999999 9999999999999999999999 4 57888 666
Q ss_pred cccc
Q 000099 1797 QVLQ 1800 (2240)
Q Consensus 1797 ~~~~ 1800 (2240)
..|+
T Consensus 94 ~~L~ 97 (112)
T cd05528 94 CELR 97 (112)
T ss_pred HHHH
Confidence 6555
|
Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver |
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00029 Score=91.25 Aligned_cols=150 Identities=21% Similarity=0.185 Sum_probs=83.4
Q ss_pred HHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH---HhCCCCCeEEEechHHH--HH---HHHHHHHHCCCCeE-EEEe
Q 000099 1012 MLSLYNNKLNGILADEMGLGKTVQVMALIAYLME---FKGNYGPHLIIVPNAVL--VN---WKSELHKWLPSVSC-IYYV 1082 (2240)
Q Consensus 1012 LlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle---~kg~~GP~LIVVP~SLL--~Q---W~~Ef~Kw~PslkV-vvy~ 1082 (2240)
+....+.+.-.|+|.+||+|||.|.=-++...-- .....|-+=|--|..+. .. -..|+..+-..+.. +-|.
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFD 343 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEec
Confidence 3445566777899999999999998665532110 00112223333365542 22 34455553223333 2344
Q ss_pred cchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh-hccccCcceEecccccccCCchhH-----HHHHhh----------
Q 000099 1083 GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS-KLSKVDWKYIIIDEAQRMKDRESV-----LARDLD---------- 1146 (2240)
Q Consensus 1083 GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s-~L~kikWd~VIIDEAHrLKN~~SK-----lskaLk---------- 1146 (2240)
|+. ..+-.|.++|-+.|+++.. .|...++..|||||||.= +-++- +++.+.
T Consensus 344 ~ti------------~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHER-SvnTDILiGmLSRiV~LR~k~~ke~~ 410 (1172)
T KOG0926|consen 344 GTI------------GEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHER-SVNTDILIGMLSRIVPLRQKYYKEQC 410 (1172)
T ss_pred ccc------------CCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhc-cchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 432 2345799999999998753 344558999999999963 22221 222221
Q ss_pred ccccceEEEeecCCCCCCHHHHHHHHhh
Q 000099 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNL 1174 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL~ELwSLLnF 1174 (2240)
.++.-..|+||||---.++.|---||-.
T Consensus 411 ~~kpLKLIIMSATLRVsDFtenk~LFpi 438 (1172)
T KOG0926|consen 411 QIKPLKLIIMSATLRVSDFTENKRLFPI 438 (1172)
T ss_pred ccCceeEEEEeeeEEecccccCceecCC
Confidence 1123457899999654444433334433
|
|
| >cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.1e-06 Score=87.71 Aligned_cols=63 Identities=19% Similarity=0.171 Sum_probs=56.7
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
.+.+| .+|++..+|+||.+|++||||++ |..+|+.|+|.++.+...|+.+ ++|.++ ..+..|+
T Consensus 29 ~s~~F~~pvd~~~~pdY~~vI~~PmDL~t-I~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~yN~~~s~i~-----~~A~~l~ 102 (115)
T cd05504 29 DSWPFLRPVSKIEVPDYYDIIKKPMDLGT-IKEKLNMGEYKLAEEFLSDIQLVFSNCFLYNPEHTSVY-----KAGTRLQ 102 (115)
T ss_pred CchhhcCCCCccccccHHHHhcCcccHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 45678 89999999999999999999999 9999999999999999999998 888888 6666655
|
Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.1e-06 Score=85.39 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=57.0
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
.+.+| .+|++..+|+||.+|++||||.. |..+|+.|+|.++.+...|+.+ ++|+++ ..+..|+
T Consensus 18 ~a~~F~~pv~~~~~p~Y~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~-----~~a~~l~ 91 (101)
T cd05509 18 SAWPFLEPVDKEEAPDYYDVIKKPMDLST-MEEKLENGYYVTLEEFVADLKLIFDNCRLYNGPDTEYY-----KCANKLE 91 (101)
T ss_pred CchhhcCCCChhhcCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 56788 88999999999999999999999 9999999999999999999998 888888 6666655
|
Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >smart00297 BROMO bromo domain | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.3e-06 Score=84.62 Aligned_cols=69 Identities=22% Similarity=0.236 Sum_probs=60.2
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+...+++.- ..+.++.+| .+|++..+|+||.+|++||||.. |..+|+.|+|.++.++..|+.+
T Consensus 11 ~~~~i~~~~-------~~~~~~~~F~~~~~~~~~p~Y~~~i~~P~dl~~-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~ 82 (107)
T smart00297 11 LLKAVLDKL-------DSHRLSWPFLKPVDRKEAPDYYDIIKKPMDLST-IKKKLENGKYSSVEEFVADVQLMFSNAKTY 82 (107)
T ss_pred HHHHHHHHH-------HhCccchhhccCCChhhccCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 445566665 235788999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccc
Q 000099 1783 --SGSWTH 1788 (2240)
Q Consensus 1783 --~~Sw~~ 1788 (2240)
++|+++
T Consensus 83 n~~~s~~~ 90 (107)
T smart00297 83 NGPDSEVY 90 (107)
T ss_pred CCCCCHHH
Confidence 777777
|
|
| >cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.4e-06 Score=85.39 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=47.9
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1782 (2240)
.+.+| .+|++..+||||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 25 ~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~L 75 (112)
T cd05510 25 HSTPFLTKVSKREAPDYYDIIKKPMDLGT-MLKKLKNLQYKSKAEFVDDLNL 75 (112)
T ss_pred cccchhcCCChhhcCCHHHHhcCccCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 46789 99999999999999999999999 9999999999999999999998
|
SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.8e-06 Score=85.40 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=54.4
Q ss_pred cccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccc
Q 000099 1731 RLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1797 (2240)
Q Consensus 1731 ~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1797 (2240)
..+.+| ..++.. .+||||.+|++||||++ |.++|+.|+|.++.+...|+.+ ++|+++ ..+.
T Consensus 20 ~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~a~ 93 (108)
T cd05495 20 PESLPFRQPVDPKLLGIPDYFDIVKNPMDLST-IRRKLDTGQYQDPWQYVDDVWLMFDNAWLYNRKTSRVY-----KYCT 93 (108)
T ss_pred cccchhcCCCCccccCCCcHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 455677 555544 79999999999999999 9999999999999999999999 888888 6665
Q ss_pred ccc
Q 000099 1798 VLQ 1800 (2240)
Q Consensus 1798 ~~~ 1800 (2240)
.|+
T Consensus 94 ~l~ 96 (108)
T cd05495 94 KLA 96 (108)
T ss_pred HHH
Confidence 554
|
Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00018 Score=90.54 Aligned_cols=108 Identities=26% Similarity=0.327 Sum_probs=84.7
Q ss_pred HhcCCeEEEEecchhHHHHHHHHHHhcCce-EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE
Q 000099 1341 QRTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419 (2240)
Q Consensus 1341 ~atGhKVLIFSQ~t~~LDiLed~L~~rGik-y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV 1419 (2240)
...|..|+-|+... .-.+...+..+|.. .++|.|+.+.+.|..--..||+++++|.| |++++|.|.|||| +++.|
T Consensus 355 lk~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsDAIGMGLNL-~IrRi 430 (700)
T KOG0953|consen 355 LKPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASDAIGMGLNL-NIRRI 430 (700)
T ss_pred CCCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeeccccccccc-ceeEE
Confidence 35789999998642 22344455566655 99999999999999999999998888776 7788999999998 48899
Q ss_pred EEcCCC---------CChhhHHHHhhhhhccCCc---ceEEEEEE
Q 000099 1420 IIYDPD---------PNPKNEEQAVARAHRIGQK---REVKVIYM 1452 (2240)
Q Consensus 1420 IifD~p---------WNP~~d~QAiGRAhRIGQK---KeV~VyrL 1452 (2240)
|||+.- -...+..|--|||+|.|.+ ..|+.++.
T Consensus 431 iF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 431 IFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred EEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 999875 3556788999999999876 33555543
|
|
| >cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.3e-06 Score=84.42 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=56.7
Q ss_pred CCccccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000099 1728 NSRRLTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1794 (2240)
Q Consensus 1728 ~~r~l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1794 (2240)
+++.++.+| ..++ ...+|+||.+|++||||+. |..+|+.|+|.++.++..|+.+ ++|.++ .
T Consensus 16 ~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~-----~ 89 (102)
T cd05498 16 KHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLST-IKKKLDNREYADAQEFAADVRLMFSNCYKYNPPDHPVH-----A 89 (102)
T ss_pred CCccccCcccCcCCccccCCCcHHHHccCCCcHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----H
Confidence 567888999 5444 3469999999999999999 9999999999999999999998 888777 5
Q ss_pred cccccc
Q 000099 1795 DEQVLQ 1800 (2240)
Q Consensus 1795 d~~~~~ 1800 (2240)
.+..|+
T Consensus 90 ~a~~l~ 95 (102)
T cd05498 90 MARKLQ 95 (102)
T ss_pred HHHHHH
Confidence 555444
|
Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily | Back alignment and domain information |
|---|
Probab=97.57 E-value=1.3e-05 Score=84.32 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=52.6
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
+.+.+| .+|+...+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|.++
T Consensus 16 ~~s~~F~~pv~~~~~p~Y~~~I~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~ 83 (112)
T cd05511 16 PDSWPFHTPVNKKKVPDYYKIIKRPMDLQT-IRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDSVYT 83 (112)
T ss_pred CCchhhcCCCChhhcccHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 456788 99999999999999999999999 9999999999999999999998 777776
|
Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=99.59 Aligned_cols=98 Identities=13% Similarity=0.261 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhh
Q 000099 1940 QRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQ 2019 (2240)
Q Consensus 1940 q~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~ 2019 (2240)
++.|..++.+|... |..| +|.....+.++|||+++ |++|||+.++..++....|.++++|..|+.||+.||+.
T Consensus 567 ~kLl~~~l~~lq~k-D~~g-----if~~pvd~~e~pdy~~i-ik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~ 639 (1051)
T KOG0955|consen 567 KKLLQKSLDKLQKK-DSYG-----IFAEPVDPSELPDYIDI-IKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCME 639 (1051)
T ss_pred HHHHHHHHHHhhcc-cccC-----ceeeccChhhcccHHHH-hcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHH
Confidence 33455666666422 3333 57777788899999999 99999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2020 FYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2020 yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
||.-+.-.|.+|..+.++--..+..
T Consensus 640 yn~~dtv~~r~av~~~e~~~~~~~~ 664 (1051)
T KOG0955|consen 640 YNAKDTVYYRAAVRLRELIKKDFRN 664 (1051)
T ss_pred hhccCeehHhhhHHHHhhhhhHHHh
Confidence 9999999999999998876544433
|
|
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
Probab=97.47 E-value=4.7e-05 Score=80.49 Aligned_cols=78 Identities=5% Similarity=-0.141 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhhccCCCcchhhhhhhccc--ccCCCccccccCCccChHHHHhhhccCCC-------CCHHHHHHHHHH
Q 000099 1942 RCKNVISKLQRRIEKEGHQIVPLLTDLWKR--IETSGYVSGAGNNILDLRKIDQRVDRLEY-------NGVMELVSDVQF 2012 (2240)
Q Consensus 1942 kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R--~~~PdYY~v~I~~PiDL~~I~qri~~~eY-------~~v~ef~~DvqL 2012 (2240)
.|..+++.|+..+ .+..++.|...+.. ...||||++ |++||||.||..+|...+| ..-.....++..
T Consensus 4 ~~~~~l~~l~~~~---~~~~~~pF~~PVd~~~~~~pdY~~i-IK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~ 79 (114)
T cd05494 4 ALERVLRELKRHR---RNEDAWPFLEPVNPPRRGAPDYRDV-IKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQID 79 (114)
T ss_pred HHHHHHHHHHHhh---hCCCCCCcCCCCCchhcCCCChhhh-cCCCCChHHHHHHHHccccccccccccccccccccccc
Confidence 4667777665444 48899999998766 899999999 9999999999999988644 333333334444
Q ss_pred HHHhhhhhcCC
Q 000099 2013 MLKGAMQFYGF 2023 (2240)
Q Consensus 2013 Mf~Na~~yn~~ 2023 (2240)
+-.||--++..
T Consensus 80 ~~~~~~~~~~~ 90 (114)
T cd05494 80 DEGRRSPSNIY 90 (114)
T ss_pred cccccCccccc
Confidence 44444444444
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily | Back alignment and domain information |
|---|
Probab=97.41 E-value=1.7e-05 Score=82.86 Aligned_cols=63 Identities=19% Similarity=0.204 Sum_probs=55.8
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhcc---CccccccccccccCC----------CCCccccCCccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEE---GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~lee---g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1796 (2240)
..+.+| .+|+. .+|+||.+|++||||++ |..+|++ |+|+++.+...|+.+ ++|+++ ..+
T Consensus 20 ~~s~~F~~pv~~-~~p~Y~~iI~~PmdL~t-I~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~a 92 (109)
T cd05502 20 ELSLPFHEPVSP-SVPNYYKIIKTPMDLSL-IRKKLQPKSPQHYSSPEEFVADVRLMFKNCYKFNEEDSEVA-----QAG 92 (109)
T ss_pred CCChhhcCCCCC-CCCCHHHHCCCCccHHH-HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 567888 77777 89999999999999999 9999999 699999999999999 888888 666
Q ss_pred cccc
Q 000099 1797 QVLQ 1800 (2240)
Q Consensus 1797 ~~~~ 1800 (2240)
..|+
T Consensus 93 ~~l~ 96 (109)
T cd05502 93 KELE 96 (109)
T ss_pred HHHH
Confidence 6665
|
Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants | Back alignment and domain information |
|---|
Probab=97.38 E-value=2.3e-05 Score=80.36 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=52.4
Q ss_pred cccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1733 TQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1733 ~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
+.+| .+++ +..+|+||++|++||||+. |..+|+.|.|.++.+...|+.+ ++|+++ +.+..|
T Consensus 18 ~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~t-I~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~~s~i~-----~~a~~l 91 (99)
T cd05506 18 GWVFNAPVDVVALGLPDYFDIIKKPMDLGT-VKKKLEKGEYSSPEEFAADVRLTFANAMRYNPPGNDVH-----TMAKEL 91 (99)
T ss_pred CccccCCCCccccCCCCHHHHHcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 5577 4444 4479999999999999999 9999999999999999999998 888888 666555
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 92 ~ 92 (99)
T cd05506 92 L 92 (99)
T ss_pred H
Confidence 4
|
Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.38 E-value=1.1e-05 Score=103.65 Aligned_cols=236 Identities=14% Similarity=0.055 Sum_probs=162.1
Q ss_pred CCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000099 1726 SSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1794 (2240)
Q Consensus 1726 ~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1794 (2240)
+-+|+.+...| +||+++.+|+||-.|..||.|.. |..++.+|.|.+++....||.+ ++|.++ +
T Consensus 69 d~~gk~~~d~feklp~~~~~p~yy~~i~~pisl~~-ik~kv~k~~y~~~~~f~~D~~lm~ena~~~n~~ds~~~-----~ 142 (629)
T KOG1827|consen 69 DDEGKQLFDKFEKLPSRKEFPEYYYVIQQPISLDQ-IKRKVKKGRYKRLSFFQLDFLLMTENARLYNRPDSLIY-----K 142 (629)
T ss_pred cccCcccchhHhhccccccCCCcceeecCcccHHH-HHHHHHhcccccHHHHHHHHHHHHHHHHHhcCcchhhh-----h
Confidence 44899999999 99999999999999999999999 9999999999999999999988 888888 8
Q ss_pred ccccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCc
Q 000099 1795 DEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSS 1874 (2240)
Q Consensus 1795 d~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 1874 (2240)
+...|+.-+.+.+.- .+..+ .+..+.....+ .--.++..+.
T Consensus 143 ~s~~l~~~~~~~~~~----~~d~e----~s~~~~~~l~~----------------------------~~l~~~~~~~--- 183 (629)
T KOG1827|consen 143 DSGELEKYFISLEDE----KKDGE----LSMESNEELKA----------------------------GGLHYHELGP--- 183 (629)
T ss_pred hhhhhhcchhhhhcc----ccchh----hcccccccccc----------------------------CCCCcccCCC---
Confidence 887777544442211 00000 01111000000 0001111000
Q ss_pred ccccCCCccccCCCcccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhh
Q 000099 1875 KSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRI 1954 (2240)
Q Consensus 1875 ~~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kL~~~~ 1954 (2240)
.+ -||-.|..+.- | -+++..
T Consensus 184 --------------------------------~~---------i~~~~~~~gd~-----------------v--lv~~~~ 203 (629)
T KOG1827|consen 184 --------------------------------VE---------IDGTKYIVGDY-----------------V--LVQNPA 203 (629)
T ss_pred --------------------------------cc---------ccCcccccCce-----------------e--eecCcc
Confidence 00 00000000000 0 022222
Q ss_pred c-cCCCcc-hhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHH
Q 000099 1955 E-KEGHQI-VPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEAR 2032 (2240)
Q Consensus 1955 d-~~Gr~l-~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~ 2032 (2240)
| ..|+.. +.-|++.|....||.||.+ +.-++=+.-..+++..+||.....|..|+-++|-|++.|+.+..=+|.|+.
T Consensus 204 d~~~p~v~~Ier~w~~~dg~k~~~~~w~-~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~ 282 (629)
T KOG1827|consen 204 DNLKPIVAQIERLWKLPDGEKWPQGCWI-YRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPE 282 (629)
T ss_pred cccCCceeeecccccCcccccccceeEe-eCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCcc
Confidence 3 446664 6788999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCChhHHhhhc---ccccCCCCCC
Q 000099 2033 KVHDLFFDLLKIAF--PDTDFREARSA---LSFTGPLSTS 2067 (2240)
Q Consensus 2033 ~L~~~F~~~~k~~f--P~~~f~~a~~a---~~~~~~~~~~ 2067 (2240)
+|.+.+.-..---| -...|.++|.- +=++.+.++.
T Consensus 283 ~ls~~dv~lcesRyn~~~K~f~kirsw~~~~p~E~~~~~~ 322 (629)
T KOG1827|consen 283 NLSEEDVFLCESRYNEQLKKFNKIRSWKAFLPREVPLTLK 322 (629)
T ss_pred cccccceeeEEeeeccchhhhccccCchhcCccccCCccc
Confidence 99876543332212 23467777773 3344444433
|
|
| >cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily | Back alignment and domain information |
|---|
Probab=97.37 E-value=2.9e-05 Score=83.51 Aligned_cols=60 Identities=13% Similarity=0.045 Sum_probs=55.7
Q ss_pred CCccccccc-CCCCcc-cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1728 NSRRLTQIV-SPVSPQ-KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1728 ~~r~l~~~f-~lps~~-~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
.++.++.+| .+++.. .+|+||.+|+.||||.+ |.++|+.|+|.++.+...|+.+ ++|-++
T Consensus 40 ~~~~~~~~F~~pv~~~~~~p~Y~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~Li~~Na~~yN~~~s~i~ 111 (128)
T cd05529 40 LQLEIAEYFEYPVDLRAWYPDYWNRVPVPMDLET-IRSRLENRYYRSLEALRHDVRLILSNAETFNEPNSEIA 111 (128)
T ss_pred ccCcccccccCCCCccccCCcHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 588899999 888888 99999999999999999 9999999999999999999998 777666
|
WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] | Back alignment and domain information |
|---|
Probab=97.36 E-value=2.7e-05 Score=76.71 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=50.8
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
+..+.+| .+|+...+|+|+.+|+.||||++ |.++|+.|+|.++.++..|+.+ ++|.++
T Consensus 11 ~~~~~~F~~~~~~~~~p~y~~~i~~P~dL~~-I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~~ 79 (84)
T PF00439_consen 11 HPISSPFSKPVDPKEYPDYYEIIKNPMDLST-IRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPIY 79 (84)
T ss_dssp STTGGGGSSSTHTTTSTTHHHHSSSS--HHH-HHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHHH
T ss_pred CCCchhhcCCCChhhCCCHHHHHhhccchhh-hhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3477889 88899999999999999999999 9999999999999999999988 677665
|
Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A .... |
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00029 Score=84.49 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=56.9
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCC--------CeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh--
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA--------DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA-- 1454 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaA--------DtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT-- 1454 (2240)
...+.|+++. ..|+|+| +||++||.|++- .+-|.+.++|+....+|..||+||-||.....+..+++
T Consensus 52 ~e~~~F~~g~--k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGE--KDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCC--ceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 4567899754 4466665 999999999962 24488999999999999999999999998765555543
Q ss_pred -hHHHhhhhh
Q 000099 1455 -VVDKISSHQ 1463 (2240)
Q Consensus 1455 -VEEkI~s~q 1463 (2240)
.|.++...+
T Consensus 129 ~gE~Rfas~v 138 (278)
T PF13871_consen 129 PGERRFASTV 138 (278)
T ss_pred HHHHHHHHHH
Confidence 444444433
|
|
| >cd04369 Bromodomain Bromodomain | Back alignment and domain information |
|---|
Probab=97.28 E-value=3e-05 Score=77.06 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=53.7
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
+....+| .+|+...+|+||.+|++||||.. |..+|+.|+|.++.+...|+.+ ++++++
T Consensus 17 ~~~~~~F~~~~~~~~~~~Y~~~i~~P~~l~~-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~~~~~~~ 85 (99)
T cd04369 17 RDLSEPFLEPVDPKEAPDYYEVIKNPMDLST-IKKKLKNGEYKSLEEFEADVRLIFSNAKTYNGPGSPIY 85 (99)
T ss_pred ccccHHHhcCCChhcCCCHHHHHhCcccHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 4678889 99999999999999999999999 9999999999999999999998 677776
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PF08880 QLQ: QLQ; InterPro: IPR014978 QLQ is named after the conserved Gln, Leu, Gln motif | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00024 Score=61.17 Aligned_cols=34 Identities=44% Similarity=0.674 Sum_probs=32.0
Q ss_pred CcchhHHHHHHHHHHHhhccccCCCCChHHHHHhc
Q 000099 473 GFTKHQLHVLKAQILAFRRLKKGEGTLPQELLRAI 507 (2240)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (2240)
-||..|++.||+||+|||-|.+|.. +|++|+.+|
T Consensus 2 ~FT~~Ql~~L~~Qi~ayK~l~~~~p-VP~~l~~~I 35 (37)
T PF08880_consen 2 PFTPAQLQELRAQILAYKYLARNQP-VPPQLQQAI 35 (37)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCC-CCHHHHHhh
Confidence 5999999999999999999999887 999999887
|
QLQ is found at the N terminus of SWI2/SNF2 protein, which has been shown to be involved in protein-protein interactions. QLQ has been postulated to be involved in mediating protein interactions []. ; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >cd05500 Bromo_BDF1_2_I Bromodomain | Back alignment and domain information |
|---|
Probab=97.24 E-value=3.8e-05 Score=79.56 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=53.6
Q ss_pred cccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccc
Q 000099 1731 RLTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1797 (2240)
Q Consensus 1731 ~l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1797 (2240)
..+.+| ..++ +..+|+||.+|++||||+. |..+|+.|.|.++.+...|+.+ ++|+++ ..+.
T Consensus 20 ~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~ 93 (103)
T cd05500 20 KDARPFLVPVDPVKLNIPHYPTIIKKPMDLGT-IERKLKSNVYTSVEEFTADFNLMVDNCLTFNGPEHPVS-----QMGK 93 (103)
T ss_pred CCChhhcCCCCcccccCCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 345677 5544 4589999999999999999 9999999999999999999998 788887 5555
Q ss_pred ccc
Q 000099 1798 VLQ 1800 (2240)
Q Consensus 1798 ~~~ 1800 (2240)
.++
T Consensus 94 ~l~ 96 (103)
T cd05500 94 RLQ 96 (103)
T ss_pred HHH
Confidence 554
|
BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family | Back alignment and domain information |
|---|
Probab=97.18 E-value=7.6e-05 Score=78.34 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=42.6
Q ss_pred CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000099 1737 SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (2240)
Q Consensus 1737 ~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1782 (2240)
.-|++.++|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 29 ~~~~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~L 73 (109)
T cd05492 29 KRGKATKLPKRRRLIHTHLDVAD-IQEKINSEKYTSLEEFKADALL 73 (109)
T ss_pred cCchhccCCCHHHHhCCCCcHHH-HHHHHHcCCCCCHHHHHHHHHH
Confidence 55777889999999999999999 9999999999999999999998
|
ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00025 Score=92.93 Aligned_cols=93 Identities=11% Similarity=0.035 Sum_probs=76.5
Q ss_pred CcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHH
Q 000099 1959 HQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLF 2038 (2240)
Q Consensus 1959 r~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F 2038 (2240)
+.=.+.|....++...|+||.+ |+-||||.++..++..+-|.++++|+.|+.+|++||..||.+.+.--..=..+.+-+
T Consensus 301 ~~~s~~~~~kvs~~~a~~y~~i-~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n~ee~~~~~~~~vv~~~~ 379 (720)
T KOG1472|consen 301 TEHSTPFLEKVSKEDAPNYYQI-IKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYNSEESHGLIEFAVIMNSK 379 (720)
T ss_pred cccccccccCCChhhCcchHHh-hhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhccccchhhhhhhhhhccC
Confidence 3446789999999999999999 999999999999999999999999999999999999999998765444444444444
Q ss_pred HHHHHHhCCCChhH
Q 000099 2039 FDLLKIAFPDTDFR 2052 (2240)
Q Consensus 2039 ~~~~k~~fP~~~f~ 2052 (2240)
--.+-.++|+..+.
T Consensus 380 s~~~~~~~~~~li~ 393 (720)
T KOG1472|consen 380 SLALIKEIPIELIG 393 (720)
T ss_pred cHhHhccchhhhcc
Confidence 44444777776654
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0054 Score=73.72 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=73.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~ 1073 (2240)
+..+++-|+.|+--|. .|-|.-..||=|||+++. +.+++....+ .++=||+-+..|. +|...|.+++
T Consensus 75 g~~p~~vQll~~l~L~------~G~laEm~TGEGKTli~~-l~a~~~AL~G--~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 75 GLRPYDVQLLGALALH------KGRLAEMKTGEGKTLIAA-LPAALNALQG--KGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp S----HHHHHHHHHHH------TTSEEEESTTSHHHHHHH-HHHHHHHTTS--S-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCcccHHHHhhhhhcc------cceeEEecCCCCcHHHHH-HHHHHHHHhc--CCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 4456667888875442 244888999999999985 4445544333 4677888877664 4888888887
Q ss_pred CCCeEEEEecc-h-hhHhHHHHHHHhhcCCcEEEEcHHHHHHhh---------hhccccCcceEeccccccc
Q 000099 1074 PSVSCIYYVGA-K-DQRSRLFSQEVAALKFNVLVTTYEFIMYDR---------SKLSKVDWKYIIIDEAQRM 1134 (2240)
Q Consensus 1074 PslkVvvy~Gs-k-deRk~l~~qei~~~~fdVVITTYE~L~kD~---------s~L~kikWd~VIIDEAHrL 1134 (2240)
++.+.+.... . ..|+.. ...+|+-+|-..+..|. .......++++||||++-+
T Consensus 146 -Glsv~~~~~~~~~~~r~~~-------Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 146 -GLSVGIITSDMSSEERREA-------YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp -T--EEEEETTTEHHHHHHH-------HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred -hhccccCccccCHHHHHHH-------HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 4555444433 2 333322 34579988887765441 1112347899999999976
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0015 Score=77.95 Aligned_cols=144 Identities=21% Similarity=0.161 Sum_probs=85.4
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC---e
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV---S 1077 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Psl---k 1077 (2240)
+-..|...+.|+.. +...++..+.|+|||+.++++....+.. +....++|+-|.-.. .|...|+|+- +
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v~~----ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVLQA----DEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCc----hhhhCcCCCCHHHH
Confidence 55678888887764 4577888999999999999988865532 344455554444222 2222333321 0
Q ss_pred EEE-----------EecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhh
Q 000099 1078 CIY-----------YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD 1146 (2240)
Q Consensus 1078 Vvv-----------y~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk 1146 (2240)
... +.|... +...+....-.|.|.+..+++ .+. +.-.+||||||+++.- ......|.
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~-----~~~~~~~~~~~Iei~~l~ymR-Grt----l~~~~vIvDEaqn~~~--~~~k~~lt 198 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASF-----MQYCLRPEIGKVEIAPFAYMR-GRT----FENAVVILDEAQNVTA--AQMKMFLT 198 (262)
T ss_pred HHHHHHHHHHHHHHHhChHH-----HHHHHHhccCcEEEecHHHhc-CCc----ccCCEEEEechhcCCH--HHHHHHHh
Confidence 000 001100 000011123346666666654 222 2458999999999853 55556667
Q ss_pred ccccceEEEeecCCCCCCH
Q 000099 1147 RYRCQRRLLLTGTPLQNDL 1165 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL 1165 (2240)
++....+++++|-|-|-++
T Consensus 199 R~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 199 RLGENVTVIVNGDITQCDL 217 (262)
T ss_pred hcCCCCEEEEeCChhhccC
Confidence 8888899999999977663
|
|
| >cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00021 Score=74.36 Aligned_cols=47 Identities=15% Similarity=0.024 Sum_probs=41.9
Q ss_pred cccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000099 1733 TQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (2240)
Q Consensus 1733 ~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1782 (2240)
+.+| .-| ..+||||.+|++||||++ |..+|..|+|.++.+...|+.+
T Consensus 20 s~~f~~~p--~~~pdY~~iIk~PMDL~t-I~~kL~~~~Y~s~~ef~~D~~L 67 (102)
T cd05501 20 SGFFISKP--YYIRDYCQGIKEPMWLNK-VKERLNERVYHTVEGFVRDMRL 67 (102)
T ss_pred cccccCCC--CCCCchHHHcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHH
Confidence 3455 433 599999999999999999 9999999999999999999988
|
The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0033 Score=72.91 Aligned_cols=144 Identities=26% Similarity=0.307 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC---e
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV---S 1077 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Psl---k 1077 (2240)
+-.+|...++.|.. ....++....|+|||+.+++..+.++.. +...+++|+-|..-+..+ +- |+|+- +
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~---lG-flpG~~~eK 75 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGED---LG-FLPGDLEEK 75 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT--------SS-------
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccc---cc-cCCCCHHHH
Confidence 45689999988773 5567888999999999999999888764 777777777776533221 11 11110 0
Q ss_pred EEEEec----------chhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhc
Q 000099 1078 CIYYVG----------AKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR 1147 (2240)
Q Consensus 1078 Vvvy~G----------skdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~ 1147 (2240)
.-.|.. ...... .......|-+.+..+++ .+ .+++.+||||||+++.. ..+...|.+
T Consensus 76 ~~p~~~p~~d~l~~~~~~~~~~------~~~~~~~Ie~~~~~~iR-Gr----t~~~~~iIvDEaQN~t~--~~~k~ilTR 142 (205)
T PF02562_consen 76 MEPYLRPIYDALEELFGKEKLE------ELIQNGKIEIEPLAFIR-GR----TFDNAFIIVDEAQNLTP--EELKMILTR 142 (205)
T ss_dssp --TTTHHHHHHHTTTS-TTCHH------HHHHTTSEEEEEGGGGT-T------B-SEEEEE-SGGG--H--HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhChHhHH------HHhhcCeEEEEehhhhc-Cc----cccceEEEEecccCCCH--HHHHHHHcc
Confidence 000000 000000 01123345555554442 11 13568999999999853 445556778
Q ss_pred cccceEEEeecCCCCCCHH
Q 000099 1148 YRCQRRLLLTGTPLQNDLK 1166 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ 1166 (2240)
+-...+++++|-|.|.++.
T Consensus 143 ~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 143 IGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp B-TT-EEEEEE--------
T ss_pred cCCCcEEEEecCceeecCC
Confidence 8888999999999877644
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0085 Score=75.68 Aligned_cols=116 Identities=17% Similarity=0.166 Sum_probs=91.9
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh----cCc----eEEeecCCCCHHHHHHHHHHHhcCCCCc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQL----VYRRIDGTTSLEDRESAIVDFNSHDSDC 1397 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~----rGi----ky~rLDGsTs~eEReeaIk~FNs~Ds~~ 1397 (2240)
.+.|+.-...|+..+...|-|.|-||..+..++++-...+. -+- .+..+.|+...++|.++-.+.-.++-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L-- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL-- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee--
Confidence 34566667778888888999999999999988876544332 121 12346788899999988877654332
Q ss_pred cEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCc
Q 000099 1398 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1398 fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQK 1444 (2240)
.-+++|.|..+|||+-..|.||++..|.+...+.|..|||+|-...
T Consensus 585 -~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 585 -CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred -eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCC
Confidence 3689999999999999999999999999999999999999997744
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0074 Score=74.93 Aligned_cols=91 Identities=24% Similarity=0.201 Sum_probs=55.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH-HHHHHCCCCeEEEEecchhhHhHHHHHHHhhcC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS-ELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~-Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~ 1100 (2240)
.|+--..|+|||+.++.++..+.. .......+++|++..+.+... .|..-. ....
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~-----------------------~~~~ 59 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKY-----------------------NPKL 59 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhc-cccCCceEEEEecchHHHHHHHHHhhhc-----------------------ccch
Confidence 366778999999999999888721 233456788888776655443 343321 0001
Q ss_pred CcEEEEcHHHHHHhhh--hccccCcceEecccccccCC
Q 000099 1101 FNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1101 fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN 1136 (2240)
....+..+..++.... ......+++|||||||++..
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 1222333333333222 23345799999999999975
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0085 Score=58.27 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000099 808 AMREKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870 (2240)
Q Consensus 808 ~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~~~~kr~~~~~~~rl~~lk~ 870 (2240)
......|..|+.+.++|.+.+...........++|..||.+.+++..+++++++++||++|++
T Consensus 11 ~h~d~lL~e~~w~a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~~ 73 (73)
T PF07529_consen 11 THHDHLLEEMLWMAKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALKS 73 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 334456899999999999998888877888899999999999999999999999999999974
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.036 Score=63.70 Aligned_cols=125 Identities=25% Similarity=0.278 Sum_probs=68.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI 1079 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVv 1079 (2240)
+|-+-|.+++..++. ....-.+|.-.-|+|||.....++ ..+...+ ..+++++|+..... ++.+-+
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~-~~~~~~g--~~v~~~apT~~Aa~---~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALA-EALEAAG--KRVIGLAPTNKAAK---ELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHH-HHHHHTT----EEEEESSHHHHH---HHHHHH------
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHH-HHHHhCC--CeEEEECCcHHHHH---HHHHhh------
Confidence 478899999999875 122235777899999998765544 4444333 68899999875432 122211
Q ss_pred EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhc------cccCcceEecccccccCCchhHHHHHhhcccc-ce
Q 000099 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL------SKVDWKYIIIDEAQRMKDRESVLARDLDRYRC-QR 1152 (2240)
Q Consensus 1080 vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L------~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks-~~ 1152 (2240)
.+-..|...+....... .....++||||||--+-+ ..+...+..... ..
T Consensus 67 ----------------------~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~--~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 67 ----------------------GIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS--RQLARLLRLAKKSGA 122 (196)
T ss_dssp ----------------------TS-EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH--HHHHHHHHHS-T-T-
T ss_pred ----------------------CcchhhHHHHHhcCCcccccccccCCcccEEEEecccccCH--HHHHHHHHHHHhcCC
Confidence 01122222222211110 023568999999998843 334444444433 56
Q ss_pred EEEeecCCCC
Q 000099 1153 RLLLTGTPLQ 1162 (2240)
Q Consensus 1153 RLLLTGTPLQ 1162 (2240)
+|+|.|-|-|
T Consensus 123 klilvGD~~Q 132 (196)
T PF13604_consen 123 KLILVGDPNQ 132 (196)
T ss_dssp EEEEEE-TTS
T ss_pred EEEEECCcch
Confidence 9999999865
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0084 Score=62.88 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=59.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechHH-HHHHHHHHHHHCCCCeEEEEecchhhHhHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNAV-LVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~k---g~~GP~LIVVP~SL-L~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~q 1094 (2240)
+..++|..+.|+|||..+-.++..+.... ....-+.|-||... ...+..++...+...... ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~----------- 70 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS--RQ----------- 70 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--TS-----------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--cC-----------
Confidence 44568899999999998877776654321 11222344444443 445555554432110000 00
Q ss_pred HHhhcCCcEEEEcHHHHHH-hhhhccccCcceEecccccccCCchhHHHHHhhcc--ccceEEEeecCC
Q 000099 1095 EVAALKFNVLVTTYEFIMY-DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY--RCQRRLLLTGTP 1160 (2240)
Q Consensus 1095 ei~~~~fdVVITTYE~L~k-D~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L--ks~~RLLLTGTP 1160 (2240)
+...+.. -...+....-.+|||||+|++. .......|..+ .....++|+|||
T Consensus 71 ------------~~~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 71 ------------TSDELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp -------------HHHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ------------CHHHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 1111111 1122333333799999999983 24444555444 556689999999
|
|
| >smart00573 HSA domain in helicases and associated with SANT domains | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.013 Score=57.70 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Q 000099 810 REKQLKSISQWRKKLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDDRNKRMEALKN 870 (2240)
Q Consensus 810 r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~v~~~h~~~~~~~~kr~~~~~~~rl~~lk~ 870 (2240)
..-.|+.++.|+++|.+.+...........+.|..||.+.++++.|+.++++++||++|++
T Consensus 13 ~d~lL~e~~w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~~ 73 (73)
T smart00573 13 WDHLLEEMIWHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445899999999999988777777777899999999999999999999999999999963
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0029 Score=85.92 Aligned_cols=179 Identities=23% Similarity=0.307 Sum_probs=97.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCch--HHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLG--KTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLG--KTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Pslk 1077 (2240)
.+.+||...+.-....... ...++++.|+| ||+.+..++.+... .+.....++++|..+..+|..+...++..-.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVLNELAL--RVLIADEVGLGDLKTIEAGAILKELLL-RGEIKRVLILVPKTLRAQWVVELLEKFNIRL 160 (866)
T ss_pred ccCcchhhhhhhhhhhhhh--chhhcccccccccccccccccchHhhh-hhhhccceeccchHHHHHHHHHhhhhccccc
Confidence 5666776655333322222 26889999999 89988776665543 5566788999999999999999877642221
Q ss_pred EEEEec-chhhHhHHHHHHHhhcCCcEEEEcHHHHHHh----hhhccccCc---ceEecccccccCCch---------hH
Q 000099 1078 CIYYVG-AKDQRSRLFSQEVAALKFNVLVTTYEFIMYD----RSKLSKVDW---KYIIIDEAQRMKDRE---------SV 1140 (2240)
Q Consensus 1078 Vvvy~G-skdeRk~l~~qei~~~~fdVVITTYE~L~kD----~s~L~kikW---d~VIIDEAHrLKN~~---------SK 1140 (2240)
.++... ........ ...........+++........ ...+....| +++++||+|.+.+.. ..
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (866)
T COG0553 161 AVLDKEGLRYLLKQY-DAYNPFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVIDEAHNLGSSEGTRKLAPLETL 239 (866)
T ss_pred hhhhhhhhhhhhhhh-cccccccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhcchHhhcccccccccccchhhh
Confidence 111111 11100000 0000000000023333333322 223344456 899999999987642 22
Q ss_pred HHHHhhccc--c------ceEEEeecCCCCCCHHHHHHHHhhhcccccCC
Q 000099 1141 LARDLDRYR--C------QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDN 1182 (2240)
Q Consensus 1141 lskaLk~Lk--s------~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S 1182 (2240)
.+..+.... . ...+++++||......+++....++.+..+..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 240 EYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred HHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 233333221 1 12347899998888777776666666555444
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.011 Score=66.10 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=67.5
Q ss_pred HHhcCCeEEEEecchhHHHHHHHHHHhcC----ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc--cccccCCC
Q 000099 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR--AAGRGLNL 1413 (2240)
Q Consensus 1340 L~atGhKVLIFSQ~t~~LDiLed~L~~rG----iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr--AGGeGLNL 1413 (2240)
+.....++|||+..-..++.+.+++.... +.+..- + ..++..+++.|..... .+|+++. ...+|||+
T Consensus 5 ~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q-~---~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 5 ISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ-G---SKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDF 77 (167)
T ss_dssp HHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES-T---CCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--
T ss_pred HhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec-C---cchHHHHHHHHHhccC---eEEEEEecccEEEeecC
Confidence 34567899999999999999999998664 333322 2 4578899999997433 4788887 99999999
Q ss_pred CC--CCeEEEcCCCC-Chhh-----------------------------HHHHhhhhhccCCcceE
Q 000099 1414 QS--ADTVIIYDPDP-NPKN-----------------------------EEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1414 Qa--ADtVIifD~pW-NP~~-----------------------------d~QAiGRAhRIGQKKeV 1447 (2240)
.+ |..||+.-.|+ +|.. ..|++||+.|-....-+
T Consensus 78 ~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~ 143 (167)
T PF13307_consen 78 PGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGV 143 (167)
T ss_dssp ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEE
T ss_pred CCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEE
Confidence 96 88999999996 3321 24889999997754433
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.05 Score=72.84 Aligned_cols=67 Identities=25% Similarity=0.306 Sum_probs=52.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHK 1071 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~K 1071 (2240)
..|-+.|..+|.+++. +....|+-...|+|||.+++.++..+.. .+ .++||++|+.. +.+....+..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~-~g--~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVK-RG--LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHH-cC--CCEEEEcCcHHHHHHHHHHHHh
Confidence 4688999999988764 2345688999999999999998888775 22 38999999774 6667666765
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.064 Score=55.53 Aligned_cols=117 Identities=16% Similarity=0.109 Sum_probs=60.5
Q ss_pred HHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecch
Q 000099 1008 GLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAK 1085 (2240)
Q Consensus 1008 GLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~Gsk 1085 (2240)
.+.++...... +...+|..+.|+|||..+-.++..+.. ...+++++........+......+..
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~----------- 71 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEGLVVAELFGHF----------- 71 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhhhHHHHHhhhh-----------
Confidence 33444433333 556789999999999777665554431 22355555444333333322211110
Q ss_pred hhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC-chhHHHHHhhccc------cceEEEeec
Q 000099 1086 DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRYR------CQRRLLLTG 1158 (2240)
Q Consensus 1086 deRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN-~~SKlskaLk~Lk------s~~RLLLTG 1158 (2240)
...... .........+|||||++++.. ....+...+..+. ....+++|+
T Consensus 72 ----------------------~~~~~~--~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~ 127 (151)
T cd00009 72 ----------------------LVRLLF--ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGAT 127 (151)
T ss_pred ----------------------hHhHHH--HhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEec
Confidence 000111 111223567999999999832 2233444444442 456777887
Q ss_pred CCCC
Q 000099 1159 TPLQ 1162 (2240)
Q Consensus 1159 TPLQ 1162 (2240)
++..
T Consensus 128 ~~~~ 131 (151)
T cd00009 128 NRPL 131 (151)
T ss_pred Cccc
Confidence 7644
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.00 E-value=1 Score=57.50 Aligned_cols=104 Identities=19% Similarity=0.178 Sum_probs=62.6
Q ss_pred CeEEEEecchhHHHHHHHHHHhc---------CceEEeecCCCCHHHHHHHHHHH--hcCCCCccEEEEecccccccCCC
Q 000099 1345 HRVLLFSTMTKLLDILEEYLQWR---------QLVYRRIDGTTSLEDRESAIVDF--NSHDSDCFIFLLSIRAAGRGLNL 1413 (2240)
Q Consensus 1345 hKVLIFSQ~t~~LDiLed~L~~r---------Giky~rLDGsTs~eEReeaIk~F--Ns~Ds~~fVfLLSTrAGGeGLNL 1413 (2240)
.-+|||-.-.+..+..++.+... .++++-|+ ..+...+++-- +..+..-+-+++||..+...|.+
T Consensus 254 GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslti 329 (699)
T KOG0925|consen 254 GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTI 329 (699)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeee
Confidence 45788876655554444443311 23444455 22222222211 11122335689999999999988
Q ss_pred CCCCeEEEcCCC------CCh-----------hhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1414 QSADTVIIYDPD------PNP-----------KNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1414 QaADtVIifD~p------WNP-----------~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.++-+|| |+- +|| ..-.||.-|++|.|.+++-..|+|.+
T Consensus 330 dgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYt 385 (699)
T KOG0925|consen 330 DGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYT 385 (699)
T ss_pred ccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeec
Confidence 8876665 332 343 44568888999999899888888876
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.033 Score=72.09 Aligned_cols=151 Identities=23% Similarity=0.292 Sum_probs=92.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHH-------
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELH------- 1070 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~------- 1070 (2240)
..|-+-|..++.+++. +..--|+-.+.|+|||.+..-+|..++..+ ..+||.+|+.+ +.|..+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~~~~~~l~ 257 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLTHLKLNLV 257 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHhcccccchh
Confidence 4678899999998875 223357889999999999999999988633 58899999874 777766432
Q ss_pred ------HHCCC-----CeEEEEecc----------------------h--hhHhHH------HHHH----------Hhhc
Q 000099 1071 ------KWLPS-----VSCIYYVGA----------------------K--DQRSRL------FSQE----------VAAL 1099 (2240)
Q Consensus 1071 ------Kw~Ps-----lkVvvy~Gs----------------------k--deRk~l------~~qe----------i~~~ 1099 (2240)
+..+. +..++-.+. + ..++.+ +..+ ....
T Consensus 258 R~g~paRl~~~~~~~sld~~~~t~d~~~~~~~~sk~~d~~~~~~~~tk~~~~~~~~~~~i~~lrkdl~kre~~~v~eii~ 337 (649)
T KOG1803|consen 258 RVGHPARLLESVADHSLDLLSNTKDNSQNAKDISKDIDILFQKNTKTKNDKLRKGIRKEIKLLRKDLRKRERKTVKEIIS 337 (649)
T ss_pred hcCchhhhhhhhhhhHHHHHHhcCchhhhhhhhHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11110 111111110 0 000000 0000 1134
Q ss_pred CCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCC
Q 000099 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162 (2240)
Q Consensus 1100 ~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQ 1162 (2240)
+..||++|-..... ..+.+..|++||||||--...+.|... +. ...+++|.|-|.|
T Consensus 338 n~~VVfaTl~ga~~--~~~~~~~fD~vIIDEaaQamE~~cWip--vl---k~kk~ILaGDp~Q 393 (649)
T KOG1803|consen 338 NSRVVFATLGGALD--RLLRKRTFDLVIIDEAAQAMEPQCWIP--VL---KGKKFILAGDPKQ 393 (649)
T ss_pred ccceEEEeccchhh--hhhcccCCCEEEEehhhhhccchhhhH--Hh---cCCceEEeCCccc
Confidence 56788888655443 455567899999999877655444322 22 2238999999865
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.039 Score=71.50 Aligned_cols=133 Identities=20% Similarity=0.324 Sum_probs=88.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~PslkV 1078 (2240)
+|-.-|..+|...+. +.=.||-.+.|+|||++..+++.+|.+. ..+|+||++|..+ +.|-...|.+- +++|
T Consensus 410 kLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t--gLKV 481 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT--GLKV 481 (935)
T ss_pred hhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc--CceE
Confidence 788899999998886 5557999999999999998888888764 5689999999775 67777777763 3555
Q ss_pred EEEecchhhH----------------------hHHHH-----------------------HHHhhcCCcEEEEcHHHHHH
Q 000099 1079 IYYVGAKDQR----------------------SRLFS-----------------------QEVAALKFNVLVTTYEFIMY 1113 (2240)
Q Consensus 1079 vvy~GskdeR----------------------k~l~~-----------------------qei~~~~fdVVITTYE~L~k 1113 (2240)
+-+.....+. ..+.. ........+|+.||--..
T Consensus 482 vRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~A-- 559 (935)
T KOG1802|consen 482 VRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGA-- 559 (935)
T ss_pred eeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEecccc--
Confidence 5433221110 00000 001123456666664222
Q ss_pred hhhhccccCcceEecccccccCCchhHHH
Q 000099 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLA 1142 (2240)
Q Consensus 1114 D~s~L~kikWd~VIIDEAHrLKN~~SKls 1142 (2240)
-...|.+++|..|+|||+-..-.+.+.+-
T Consensus 560 gd~rl~~~kfr~VLiDEaTQatEpe~LiP 588 (935)
T KOG1802|consen 560 GDRRLSKFKFRTVLIDEATQATEPECLIP 588 (935)
T ss_pred cchhhccccccEEEEecccccCCcchhhh
Confidence 22446778999999999987766555444
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.055 Score=72.43 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=38.8
Q ss_pred CCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHH
Q 000099 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMAL 1039 (2240)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIAL 1039 (2240)
.|..+. .++|+-|+.-+..+++......+|+|-++||+|||+.-|..
T Consensus 14 v~V~fP-~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS 60 (945)
T KOG1132|consen 14 VPVEFP-FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCS 60 (945)
T ss_pred ceeecc-CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHH
Confidence 344443 36789999999999999999999999999999999876553
|
|
| >KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.0019 Score=78.88 Aligned_cols=66 Identities=11% Similarity=0.057 Sum_probs=62.2
Q ss_pred cCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHH
Q 000099 1973 ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFF 2039 (2240)
Q Consensus 1973 ~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~ 2039 (2240)
-.|+|-++ |+.|||+.+|.++|+-.+|.+..+|..|++||..||..||-...-+|..|..|..+-.
T Consensus 48 map~y~~i-is~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~Tv~~~aaKrL~~v~~ 113 (418)
T KOG1828|consen 48 MAPNYLEI-ISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPTVPIVAAKRLCPVRL 113 (418)
T ss_pred hccchHhh-hhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCccccccccccchhhc
Confidence 36999999 9999999999999999999999999999999999999999999999999999877643
|
|
| >KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.011 Score=80.93 Aligned_cols=80 Identities=14% Similarity=0.211 Sum_probs=70.2
Q ss_pred hhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHH
Q 000099 1963 PLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLL 2042 (2240)
Q Consensus 1963 ~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~ 2042 (2240)
..|..+..-++.+|||.| |..||||+++...|...-|..-+.|..|+.||++|...||++-+-.-..|...-.+.+.+|
T Consensus 1280 ~~f~~Pv~~k~v~dyy~v-i~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~~~~t~~~q~mls~~~~~~ 1358 (1563)
T KOG0008|consen 1280 YPFPTPVNAKEVKDYYRV-ITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPLASLTRQQQSMLSLCFEKL 1358 (1563)
T ss_pred cCCCCccchhhccchhhc-cCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCchHHHHHHHHHHHHHHHHhh
Confidence 457777888999999999 9999999999999999999999999999999999999999998887777776666655554
Q ss_pred H
Q 000099 2043 K 2043 (2240)
Q Consensus 2043 k 2043 (2240)
+
T Consensus 1359 ~ 1359 (1563)
T KOG0008|consen 1359 K 1359 (1563)
T ss_pred c
Confidence 3
|
|
| >KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.0047 Score=82.26 Aligned_cols=88 Identities=16% Similarity=0.207 Sum_probs=76.3
Q ss_pred Ccchhhhhhhcc--cccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHH
Q 000099 1959 HQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHD 2036 (2240)
Q Consensus 1959 r~l~~~F~~~p~--R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~ 2036 (2240)
|++++.|..+.. ....|+||.+ |.+|||+.+|+.+|....|..+.+=+.|+.-||.||..||...-.|+..+..|++
T Consensus 7 ~~~~~~f~~~v~~v~l~~~~~~~~-~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~~~~ 85 (640)
T KOG1474|consen 7 HKLAWPFLEPVDAVALNLPAYYEI-IKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQSLEK 85 (640)
T ss_pred ccccccccCccchhhccchhhhcc-cCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhccccchh
Confidence 445555555532 4456999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 000099 2037 LFFDLLKIAFP 2047 (2240)
Q Consensus 2037 ~F~~~~k~~fP 2047 (2240)
+|...+..++-
T Consensus 86 ~~~~~~~~~~~ 96 (640)
T KOG1474|consen 86 LFPKKLRSMPS 96 (640)
T ss_pred hcccccccccc
Confidence 99887766653
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.067 Score=63.22 Aligned_cols=113 Identities=21% Similarity=0.229 Sum_probs=73.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC-
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV- 1076 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Psl- 1076 (2240)
+..||+-|.+.+..|++- ..+.|.++-.-||-|||-+++=+++.++. .+ ..=+-+|||..++.+-..-+...+.++
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LA-dg-~~LvrviVpk~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALA-DG-SRLVRVIVPKALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHc-CC-CcEEEEEcCHHHHHHHHHHHHHHHHHHh
Confidence 347999999999999863 45678899999999999888777776664 22 234678889999998777776665432
Q ss_pred --eEEEEecchh-----hH-hHHHHH-HHhhcCCcEEEEcHHHHHH
Q 000099 1077 --SCIYYVGAKD-----QR-SRLFSQ-EVAALKFNVLVTTYEFIMY 1113 (2240)
Q Consensus 1077 --kVvvy~Gskd-----eR-k~l~~q-ei~~~~fdVVITTYE~L~k 1113 (2240)
.++.+.-+.. .. ..+... ......-.|+|+|++.+..
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilS 143 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILS 143 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHH
Confidence 2222211111 11 111100 1122456799999987753
|
There are two conserved sequence motifs: LLE and NMG. |
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.11 Score=69.16 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechHHHHH-HHHHHHHHCCCCeEE
Q 000099 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNAVLVN-WKSELHKWLPSVSCI 1079 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~SLL~Q-W~~Ef~Kw~PslkVv 1079 (2240)
+.|+.++..++. +.-.||....|+|||.++..++..+...... ...+++++|+.-... ..+-+..-...+...
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 789999887776 5567999999999999998888877654322 246889999875443 333333222111100
Q ss_pred EEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--------hccccCcceEecccccccCCchhHHHHHhhccccc
Q 000099 1080 YYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--------KLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ 1151 (2240)
Q Consensus 1080 vy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--------~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~ 1151 (2240)
..... ...+-..|...+..... .-....+++||||||--+- ...+...+..+...
T Consensus 224 -----~~~~~----------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd--~~l~~~ll~al~~~ 286 (586)
T TIGR01447 224 -----EALIA----------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD--LPLMAKLLKALPPN 286 (586)
T ss_pred -----hhhhh----------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC--HHHHHHHHHhcCCC
Confidence 00000 00111222222221110 0112368999999998773 23455566677778
Q ss_pred eEEEeecCCCC
Q 000099 1152 RRLLLTGTPLQ 1162 (2240)
Q Consensus 1152 ~RLLLTGTPLQ 1162 (2240)
.+|+|.|-|-|
T Consensus 287 ~rlIlvGD~~Q 297 (586)
T TIGR01447 287 TKLILLGDKNQ 297 (586)
T ss_pred CEEEEECChhh
Confidence 89999998755
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.14 Score=65.33 Aligned_cols=67 Identities=18% Similarity=0.080 Sum_probs=48.6
Q ss_pred CCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000099 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2240)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (2240)
.|..|.-...+|-|..-..-+......+.+|||-.+.|+|||+.-+++|.......+..-.-||-|-
T Consensus 8 l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 8 LLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred eeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 3444544578888977666666677788999999999999999999987655544444444466664
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.12 Score=61.67 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=21.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
..+.||.-+.|+|||..+-++...+..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345689999999999988777666544
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.18 Score=68.65 Aligned_cols=134 Identities=22% Similarity=0.204 Sum_probs=80.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkV 1078 (2240)
..|.+-|.+++..+.. +.-.||....|+|||.++-+++..+.. .+...++++++|+........|..- ...
T Consensus 322 ~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~e~~g----~~a 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAKRLGEVTG----LTA 392 (720)
T ss_pred CCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHHHHHHhcC----Ccc
Confidence 4789999999988753 446799999999999887666655443 3322578888998876655444210 000
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeec
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTG 1158 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTG 1158 (2240)
..-.+++. . ..+-. ...... .....++||||||+.+-. ..+...+..+....+|+|-|
T Consensus 393 -------~Tih~lL~----~-~~~~~------~~~~~~--~~~~~~llIvDEaSMvd~--~~~~~Ll~~~~~~~rlilvG 450 (720)
T TIGR01448 393 -------STIHRLLG----Y-GPDTF------RHNHLE--DPIDCDLLIVDESSMMDT--WLALSLLAALPDHARLLLVG 450 (720)
T ss_pred -------ccHHHHhh----c-cCCcc------chhhhh--ccccCCEEEEeccccCCH--HHHHHHHHhCCCCCEEEEEC
Confidence 00001110 0 00000 000000 124578999999999842 23445556667778999999
Q ss_pred CCCCC
Q 000099 1159 TPLQN 1163 (2240)
Q Consensus 1159 TPLQN 1163 (2240)
-|-|-
T Consensus 451 D~~QL 455 (720)
T TIGR01448 451 DTDQL 455 (720)
T ss_pred ccccc
Confidence 87653
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.15 Score=68.70 Aligned_cols=40 Identities=18% Similarity=0.353 Sum_probs=28.6
Q ss_pred cCcceEecccccccCCch-hHHHHHhhccccceEEEeecCC
Q 000099 1121 VDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN~~-SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
-+|+++||||+|.|.+.. ..+.+.|.......+++|+.|-
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 478999999999996432 3455555565666788888774
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.62 Score=59.31 Aligned_cols=158 Identities=12% Similarity=0.079 Sum_probs=88.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH--HHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA--VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~S--LL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei 1096 (2240)
...++...+|+|||.++.-+..++.... .....+++|+=.. .-..|. +..|+..+.+-+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv---------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPV---------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcce----------------
Confidence 3457899999999999877776665432 1234555555322 222222 444432111111
Q ss_pred hhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchh---HHHHHhhcccc--ceEEEeecCCCCCCHHHHHHH
Q 000099 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRYRC--QRRLLLTGTPLQNDLKELWSL 1171 (2240)
Q Consensus 1097 ~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~S---KlskaLk~Lks--~~RLLLTGTPLQNnL~ELwSL 1171 (2240)
.++.++..+......+ .++++||||++.+...... .+...+..... ...|.|+||--.+.+.+++.-
T Consensus 237 ------~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~ 308 (388)
T PRK12723 237 ------KAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQ 308 (388)
T ss_pred ------EeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHH
Confidence 1122334443332333 3689999999998864322 33333333332 457889999888888888877
Q ss_pred Hhhhccc-----------ccCChHHHHhhhcCCcccCCCCCCC
Q 000099 1172 LNLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNA 1203 (2240)
Q Consensus 1172 LnFLlP~-----------iF~S~~sF~e~F~kPf~~~g~~~~~ 1203 (2240)
+..+.+. -++..-.+...+..|+...+.....
T Consensus 309 ~~~~~~~~~I~TKlDet~~~G~~l~~~~~~~~Pi~yit~Gq~v 351 (388)
T PRK12723 309 FSPFSYKTVIFTKLDETTCVGNLISLIYEMRKEVSYVTDGQIV 351 (388)
T ss_pred hcCCCCCEEEEEeccCCCcchHHHHHHHHHCCCEEEEeCCCCC
Confidence 7654332 1234445666677787765544433
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.2 Score=66.98 Aligned_cols=141 Identities=20% Similarity=0.247 Sum_probs=83.2
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHHHHHH-HHHHCCCCeE
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVNWKSE-LHKWLPSVSC 1078 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~QW~~E-f~Kw~PslkV 1078 (2240)
+-+.|+.++...+. +.-.||....|+|||.++..++..+.+... ....+++++|+.-...=..| +..-...+..
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999977765 555799999999999999888887765332 23467888898754443333 2211111100
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--------hhccccCcceEecccccccCCchhHHHHHhhcccc
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--------s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks 1150 (2240)
....+ ..+..-..|...+.... ..-....+++|||||+--+- -......+..+..
T Consensus 229 -----~~~~~----------~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd--~~lm~~ll~al~~ 291 (615)
T PRK10875 229 -----TDEQK----------KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD--LPMMARLIDALPP 291 (615)
T ss_pred -----chhhh----------hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc--HHHHHHHHHhccc
Confidence 00000 00011122222222111 01122467999999998873 3445566677788
Q ss_pred ceEEEeecCCCC
Q 000099 1151 QRRLLLTGTPLQ 1162 (2240)
Q Consensus 1151 ~~RLLLTGTPLQ 1162 (2240)
..||+|-|-|-|
T Consensus 292 ~~rlIlvGD~~Q 303 (615)
T PRK10875 292 HARVIFLGDRDQ 303 (615)
T ss_pred CCEEEEecchhh
Confidence 889999998755
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.034 Score=71.54 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=58.6
Q ss_pred EcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-hHHHHHHHHHHHH-----HCCCCeEEEEecchhhHhHHHHHHHhh
Q 000099 1025 ADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-NAVLVNWKSELHK-----WLPSVSCIYYVGAKDQRSRLFSQEVAA 1098 (2240)
Q Consensus 1025 ADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~SLL~QW~~Ef~K-----w~PslkVvvy~GskdeRk~l~~qei~~ 1098 (2240)
-+.||+|||+++.++|++++. ..+..+|+.|- +++|..-...|.. ++- -.++.|.+..-.-+.+-.-..-.
T Consensus 3 ~matgsgkt~~ma~lil~~y~--kgyr~flffvnq~nilekt~~nftd~~s~kylf-~e~i~~~d~~i~ikkvn~fsehn 79 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYK--KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLF-SENININDENIEIKKVNNFSEHN 79 (812)
T ss_pred ccccCCChhhHHHHHHHHHHH--hchhhEEEEecchhHHHHHHhhcccchhhhHhh-hhhhhcCCceeeeeeecccCccC
Confidence 367999999999999999885 44567777774 5566544433321 110 01111222111111110000123
Q ss_pred cCCcEEEEcHHHHHHhhh----------hccccCcceEecccccccC
Q 000099 1099 LKFNVLVTTYEFIMYDRS----------KLSKVDWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1099 ~~fdVVITTYE~L~kD~s----------~L~kikWd~VIIDEAHrLK 1135 (2240)
....|++||.+.+..+.. .|.. .--+++-||||++.
T Consensus 80 d~iei~fttiq~l~~d~~~~ken~itledl~~-~klvfl~deahhln 125 (812)
T COG3421 80 DAIEIYFTTIQGLFSDFTRAKENAITLEDLKD-QKLVFLADEAHHLN 125 (812)
T ss_pred CceEEEEeehHHHHHHHHhhccccccHhhHhh-CceEEEechhhhhh
Confidence 345799999988876521 1222 22356789999993
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.27 Score=67.71 Aligned_cols=115 Identities=16% Similarity=0.066 Sum_probs=57.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCCCeEEEEecchhh-HhHHHHHHHhhc
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPSVSCIYYVGAKDQ-RSRLFSQEVAAL 1099 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw-~PslkVvvy~Gskde-Rk~l~~qei~~~ 1099 (2240)
-||....|+|||..+..|...|....+.....+-.|+. +..|..- ...+.++.+.+.... ...+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s------C~~~~~g~~~~~dv~eidaas~~~Vd~iR------- 106 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS------CVALAPGGPGSLDVTEIDAASHGGVDDAR------- 106 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH------HHHHHcCCCCCCcEEEecccccCCHHHHH-------
Confidence 38999999999999988887776432211111223433 1222111 122444444332110 00000
Q ss_pred CCcEEEEcHHHHHHhhh-hccccCcceEecccccccCCch-hHHHHHhhccccceEEEeecC
Q 000099 1100 KFNVLVTTYEFIMYDRS-KLSKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGT 1159 (2240)
Q Consensus 1100 ~fdVVITTYE~L~kD~s-~L~kikWd~VIIDEAHrLKN~~-SKlskaLk~Lks~~RLLLTGT 1159 (2240)
.++.... .-...+|+++||||+|+|.... ..+.+.|.......+++|+.|
T Consensus 107 ----------~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt 158 (824)
T PRK07764 107 ----------ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATT 158 (824)
T ss_pred ----------HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 0000000 0112478999999999995422 235555555555556666544
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.11 Score=52.94 Aligned_cols=43 Identities=23% Similarity=0.104 Sum_probs=28.8
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
.+.+|.-++|+|||..+..++..+.... ..++++.+......|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~ 45 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEV 45 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccC
Confidence 4568999999999998877765544211 356777766544433
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.19 Score=68.89 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=27.4
Q ss_pred cCcceEecccccccCC-chhHHHHHhhccccceEEEeecCC
Q 000099 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
-+|.++||||+|+|.. ....+.+.|.......+++|..|-
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 4789999999999942 223455555555666677777553
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.21 Score=64.66 Aligned_cols=41 Identities=20% Similarity=0.108 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcCCC-C--eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL-N--GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l-n--GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..|...+.++. + -|+..+.|+|||..|..++..+..
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4444444444333332 2 399999999999998888776653
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.42 Score=58.87 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=31.8
Q ss_pred cCcceEecccccccCC-chhHHHHHhhccccceEEEeecCCCCCCHHHHHH
Q 000099 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwS 1170 (2240)
..|++|||||+|.|-. ....+.+.+..+....+++|+.+....-+..|-+
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 3689999999999953 2233445555555566788887765443344443
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.18 Score=57.81 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=25.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (2240)
.++..+||.|||..++.++..+.. ...+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEec
Confidence 477889999999988888776654 2346677754
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.15 Score=70.12 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=79.1
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-----HHHHHHHHHHCCCCeEEEEecchhhH
Q 000099 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-----VNWKSELHKWLPSVSCIYYVGAKDQR 1088 (2240)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-----~QW~~Ef~Kw~PslkVvvy~GskdeR 1088 (2240)
.+|+.+.+.+++...|+|||+++=..+.. ....+.++-|+|...+ ..|...|.+. .+..++-..|.....
T Consensus 1154 ~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~ 1228 (1674)
T KOG0951|consen 1154 SLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLD 1228 (1674)
T ss_pred eeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccc
Confidence 35677888999999999999877444332 4566789999998754 4588888776 566777777765443
Q ss_pred hHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCch
Q 000099 1089 SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138 (2240)
Q Consensus 1089 k~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~ 1138 (2240)
.++ ...-+|+|.|++.+-... .. -..++.|+||.|.+....
T Consensus 1229 lkl------~~~~~vii~tpe~~d~lq-~i--Q~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1229 LKL------LQKGQVIISTPEQWDLLQ-SI--QQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred hHH------hhhcceEEechhHHHHHh-hh--hhcceEeeehhhhhcccC
Confidence 222 345689999999875442 11 256899999999987533
|
|
| >cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.035 Score=59.12 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=34.2
Q ss_pred cccccc-CCCCc--ccccchhhhhcCCCCcccccchhhccCcc
Q 000099 1731 RLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEI 1770 (2240)
Q Consensus 1731 ~l~~~f-~lps~--~~~~~yya~i~~P~dl~~~i~~~leeg~y 1770 (2240)
..+.+| ..++. ...||||.+||+||||++ |..+|.++.+
T Consensus 19 ~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~t-i~~kl~~~~~ 60 (114)
T cd05494 19 EDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGT-KVNNIVETGA 60 (114)
T ss_pred CCCCCcCCCCCchhcCCCChhhhcCCCCChHH-HHHHHHcccc
Confidence 456778 66677 889999999999999999 9999999987
|
Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.9 Score=57.45 Aligned_cols=353 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh---hhhccccCcceEecccccccCC------
Q 000099 1066 KSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD---RSKLSKVDWKYIIIDEAQRMKD------ 1136 (2240)
Q Consensus 1066 ~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD---~s~L~kikWd~VIIDEAHrLKN------ 1136 (2240)
..|+.......+.+.|+|+ .......++|+..|+.|..+ ...=...+-.+|||||||++.+
T Consensus 299 iEdLv~lGk~~~~CPYY~S----------R~avp~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlidti~smh 368 (821)
T KOG1133|consen 299 IEDLVALGKELRGCPYYAS----------RRAVPQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLIDTICSMH 368 (821)
T ss_pred HHHHHHhhhhcCCCCchhh----------hhccccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHHHHHHhh
Q ss_pred -------chhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCC--CCCCCChhh
Q 000099 1137 -------RESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEG--PTHNADDDW 1207 (2240)
Q Consensus 1137 -------~~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g--~~~~~e~d~ 1207 (2240)
.-+.....|..|..++-.-|.+ +|+.-|--|+.++ ..|...+..-+...+ ..-...+-.
T Consensus 369 sa~Is~~ql~~a~~~i~~Y~~rf~~rl~~----~N~~~l~ql~~l~--------~~ll~fl~~~~~~~~~~~~~~~~dfl 436 (821)
T KOG1133|consen 369 SAEISFSQLCRAHKQIQQYFERFGKRLKA----KNLMYLKQLLSLL--------RRLLKFLDSNCELNGNGESLMRNDFL 436 (821)
T ss_pred hhheeHHHHHHHHHHHHHHHHHHHHhhCc----cchhHHHHHHHHH--------HHHHHHHHhhhhhCCcccccchhhhh
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCC------------CceEEEEEeccCHHHHHHHHHHHHccCcccCchh
Q 000099 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLP------------PKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPED 1275 (2240)
Q Consensus 1208 l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP------------~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~ 1275 (2240)
+...-....+..|...+.--.+-|........+- ..++..-.-++++....-...++...+.....+.
T Consensus 437 ~~~~id~iNL~kl~~Yi~~S~i~rKv~G~~~r~~~~~s~plq~l~~~~~~~~ee~~~~ps~l~~l~~FL~~LTn~~~dGr 516 (821)
T KOG1133|consen 437 FSSGIDNINLFKLLDYIEKSKIARKVDGFGERLSEVFSQPLQSLQKKRVEAEEESQLKPSPLFELSSFLGALTNNNEDGR 516 (821)
T ss_pred hhcCccceeHHHHHHHHHHhhHHHHhcchhhcchhhccchhhHhhhccccchhcccCCCchhHHHHHHHHHHhCCCCCCc
Q ss_pred HHhhhhcC---hhhHHHHHHHHHHHHHHHHHH-----------------------------cCC--------CCCCCCCc
Q 000099 1276 EKRRVQKN---PIYQAKVYKTLNNRCMELRKT-----------------------------CNH--------PLLNYPYF 1315 (2240)
Q Consensus 1276 e~~~l~~~---~~~~ak~~~sL~nilmqLRKI-----------------------------CNH--------P~L~~p~~ 1315 (2240)
..-..... ........+.+..++.+.|-+ |+| |+++....
T Consensus 517 i~~~k~~s~~lky~lL~pA~~f~evv~earavvLAGGTMeP~~e~~e~L~~~~~~~i~~fsc~Hvip~e~il~~vv~~gp 596 (821)
T KOG1133|consen 517 IFYSKQGSGTLKYMLLNPAKHFAEVVLEARAVVLAGGTMEPVDELREQLFPGCPERISPFSCSHVIPPENILPLVVSSGP 596 (821)
T ss_pred EEEeccCCceEEEEecCcHHHHHHHHHHhheeeecCCccccHHHHHHHhcccchhhccceecccccChhheeeeeeccCC
Q ss_pred cccchhhHhhcccHHHHHHHHHHHH----HhcCCeEEEEecchhHHHHHHHHHHhcCc-------eEEeecCCCCHHHHH
Q 000099 1316 SDLSKDFLVKSCGKLWILDRILIKL----QRTGHRVLLFSTMTKLLDILEEYLQWRQL-------VYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1316 ~~ls~d~LirsSGKLelLdrIL~kL----~atGhKVLIFSQ~t~~LDiLed~L~~rGi-------ky~rLDGsTs~eERe 1384 (2240)
.....++....-+--.+|..+-..+ ..-..=|++|...-..+..+..++...|+ +-+.+....+.++--
T Consensus 597 sg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~~~dvl 676 (821)
T KOG1133|consen 597 SGQPLEFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDTVEDVL 676 (821)
T ss_pred CCCceEEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCcccHHHHH
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCC--CCeEEEcCCCCC--------------------hh------------h
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--ADTVIIYDPDPN--------------------PK------------N 1430 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQa--ADtVIifD~pWN--------------------P~------------~ 1430 (2240)
+-...=-........|-+--.-.++|||+.+ +..||+...|+- |. .
T Consensus 677 ~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkA 756 (821)
T KOG1133|consen 677 EGYAEAAERGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKA 756 (821)
T ss_pred HHHHHHhhcCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHH
Q ss_pred HHHHhhhhhc
Q 000099 1431 EEQAVARAHR 1440 (2240)
Q Consensus 1431 d~QAiGRAhR 1440 (2240)
..|.||||-|
T Consensus 757 VNQsIGRAIR 766 (821)
T KOG1133|consen 757 VNQSIGRAIR 766 (821)
T ss_pred HHHHHHHHHh
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.24 Score=60.51 Aligned_cols=44 Identities=18% Similarity=0.261 Sum_probs=27.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVL 1062 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL 1062 (2240)
+.+.||.-+.|+|||..|-++...+..... ..++++.|....++
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 455689999999999999888766554221 12344444433343
|
|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.26 Score=61.37 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=78.3
Q ss_pred CCccCCCCCc-HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH--------
Q 000099 993 PSMLRAGTLR-DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-------- 1063 (2240)
Q Consensus 993 Ps~L~ggtLR-PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-------- 1063 (2240)
+....|.+.| -||.-++..++. ..-.=..|...-|+|||+.|+|.-.+-...++.+..++|--|.--+.
T Consensus 220 ~~~vwGi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 220 DQEVWGIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred chhhhccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCC
Confidence 3333443333 378888877764 11122467778899999998887665544466666655554543222
Q ss_pred -------HHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC
Q 000099 1064 -------NWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1064 -------QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN 1136 (2240)
-|..-|.. ++.++.-..... ...+..........|.-.||= +-+ .+.-.+||||||+++--
T Consensus 298 ~eEeKm~PWmq~i~D---nLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~I---RGR----Sl~~~FiIIDEaQNLTp 365 (436)
T COG1875 298 TEEEKMGPWMQAIFD---NLEVLFSPNEPG--DRALEEILSRGRIEVEALTYI---RGR----SLPDSFIIIDEAQNLTP 365 (436)
T ss_pred chhhhccchHHHHHh---HHHHHhcccccc--hHHHHHHHhccceeeeeeeee---ccc----ccccceEEEehhhccCH
Confidence 23332211 111100000000 111111111222233333321 111 23456899999999853
Q ss_pred chhHHHHHhhccccceEEEeecCCCCCC
Q 000099 1137 RESVLARDLDRYRCQRRLLLTGTPLQND 1164 (2240)
Q Consensus 1137 ~~SKlskaLk~Lks~~RLLLTGTPLQNn 1164 (2240)
+ .+--.+.+.-...++.|||-|.|-+
T Consensus 366 h--eikTiltR~G~GsKIVl~gd~aQiD 391 (436)
T COG1875 366 H--ELKTILTRAGEGSKIVLTGDPAQID 391 (436)
T ss_pred H--HHHHHHHhccCCCEEEEcCCHHHcC
Confidence 2 2333344555667999999986543
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.4 Score=64.08 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000099 1023 ILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle 1045 (2240)
||..+.|+|||..+..+...|..
T Consensus 42 LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 42 LFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 88999999999999888877753
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.23 Score=60.42 Aligned_cols=40 Identities=18% Similarity=0.187 Sum_probs=26.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEec
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVP 1058 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP 1058 (2240)
+.+.+|..+.|+|||..|.++...+...... .++++.|..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 4467899999999999997777666542221 235454443
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.55 Score=63.96 Aligned_cols=147 Identities=21% Similarity=0.173 Sum_probs=85.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkV 1078 (2240)
.|-.-|+.++...+...+..+ |+.. .|+|||-+...+|..|... .+.+|+.+=++ .+.|..-.+..+--.
T Consensus 669 ~LN~dQr~A~~k~L~aedy~L--I~GM-PGTGKTTtI~~LIkiL~~~---gkkVLLtsyThsAVDNILiKL~~~~i~--- 739 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYAL--ILGM-PGTGKTTTISLLIKILVAL---GKKVLLTSYTHSAVDNILIKLKGFGIY--- 739 (1100)
T ss_pred hcCHHHHHHHHHHHhccchhe--eecC-CCCCchhhHHHHHHHHHHc---CCeEEEEehhhHHHHHHHHHHhccCcc---
Confidence 466789999887775433322 5555 7999999888888877752 34678888654 678877666654211
Q ss_pred EEEecchhhHhHHHH---------------HHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHH
Q 000099 1079 IYYVGAKDQRSRLFS---------------QEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~---------------qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlsk 1143 (2240)
++--|....-..... .........||.+|---+. ...|....|||+|||||--+.-+-
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~lP~----- 812 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILLPL----- 812 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEccccccccch-----
Confidence 222232211111100 0112334456666543322 355667789999999998764321
Q ss_pred HhhccccceEEEeecCCCC
Q 000099 1144 DLDRYRCQRRLLLTGTPLQ 1162 (2240)
Q Consensus 1144 aLk~Lks~~RLLLTGTPLQ 1162 (2240)
.|.-+....+..|-|-+.|
T Consensus 813 ~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 813 CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhhhhhhcceEEEeccccc
Confidence 2233444556677776543
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.51 Score=57.73 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1006 IVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1006 leGLqwLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
...+.++.....++. +.+|..+.|+|||..+.++...+.
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 334455555444444 579999999999999988877665
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=92.06 E-value=1 Score=52.11 Aligned_cols=92 Identities=24% Similarity=0.281 Sum_probs=54.7
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHh
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVA 1097 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~ 1097 (2240)
...+.+|..+.|+|||..+.++..++.. . +..++.+....+..|..++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~-~---~~~~~~i~~~~~~~~~~~~~~-------------------------- 86 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEE-R---GKSAIYLPLAELAQADPEVLE-------------------------- 86 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh-c---CCcEEEEeHHHHHHhHHHHHh--------------------------
Confidence 3456789999999999999887766553 1 223445555554444311110
Q ss_pred hcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCc---hhHHHHHhhcc-ccceEEEeecCC
Q 000099 1098 ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGTP 1160 (2240)
Q Consensus 1098 ~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~---~SKlskaLk~L-ks~~RLLLTGTP 1160 (2240)
.+. ..++|||||+|.+... ...+...+..+ ....++++|+|.
T Consensus 87 -------------------~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 87 -------------------GLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred -------------------hcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 011 2368999999998643 23344444443 233578888875
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.35 Score=58.14 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=35.3
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
....|+- .+.|.+|..+.|+|||..+.++...+.. .+ .+++++. ...|..++.
T Consensus 90 ~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~-~g--~~v~f~t----~~~l~~~l~ 142 (254)
T PRK06526 90 GTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQ-AG--HRVLFAT----AAQWVARLA 142 (254)
T ss_pred hcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHH-CC--Cchhhhh----HHHHHHHHH
Confidence 3445664 4678899999999999999998877764 22 2444432 234555554
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.85 E-value=1.1 Score=60.37 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=26.5
Q ss_pred cCcceEecccccccCC-chhHHHHHhhccccceEEEeecCC
Q 000099 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
-+|+++||||+|+|.. ....+.+.|.......+++|+.|-
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 3789999999999953 223445555555555577777553
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.54 Score=59.11 Aligned_cols=41 Identities=12% Similarity=0.225 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|..++..+...+..+. .-|+..+.|+|||..+..++..++.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 5566777777766554 3588999999999999888887764
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=91.71 E-value=1.2 Score=49.94 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCCCeEEE
Q 000099 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPSVSCIY 1080 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw-~PslkVvv 1080 (2240)
|.+.+..+..++.++ .+. |+..+.|+||+-.+.+++..++....... .|-.. .....+..- .|++.++
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~----~c~~c---~~c~~~~~~~~~d~~~~- 73 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED----PCGEC---RSCRRIEEGNHPDFIII- 73 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT------SSS---HHHHHHHTT-CTTEEEE-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCC---HHHHHHHhccCcceEEE-
Confidence 556666676666544 233 88899999999999999988876433322 22111 112222221 2333222
Q ss_pred EecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhcc----ccCcceEecccccccCC-chhHHHHHhhccccceEEE
Q 000099 1081 YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLL 1155 (2240)
Q Consensus 1081 y~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLL 1155 (2240)
......+ .+ ..+.++.-...+. ...|+++||||||+|.. ....+.+.|.......+++
T Consensus 74 -~~~~~~~-------------~i---~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 74 -KPDKKKK-------------SI---KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp -ETTTSSS-------------SB---SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred -ecccccc-------------hh---hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2211100 00 0112221111111 13689999999999943 4456777777777788888
Q ss_pred eecCCCCCCH
Q 000099 1156 LTGTPLQNDL 1165 (2240)
Q Consensus 1156 LTGTPLQNnL 1165 (2240)
|+.+=...-+
T Consensus 137 L~t~~~~~il 146 (162)
T PF13177_consen 137 LITNNPSKIL 146 (162)
T ss_dssp EEES-GGGS-
T ss_pred EEECChHHCh
Confidence 8877444333
|
... |
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.1 Score=54.48 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
+..-|...+.++......+.|.+|..++|+|||..+.++...+.+
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 445666666555433456778899999999999999888877765
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.6 Score=59.01 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=28.9
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecCCCCCCHHHHH
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQNDLKELW 1169 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELw 1169 (2240)
++++|||||+|.|... ...+.+.|.......+++|+.|-...-+.-+.
T Consensus 119 k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr 167 (709)
T PRK08691 119 KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL 167 (709)
T ss_pred CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH
Confidence 6889999999998531 22344445444455567777664444443333
|
|
| >cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.27 Score=53.66 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=60.0
Q ss_pred cCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000099 1982 GNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 2048 (2240)
Q Consensus 1982 I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~ 2048 (2240)
-.-|.||.-+.+|++.+.|.+|.+|..||=.++.=++.=-+...|+.+.-..+.-+|+.+|..+||-
T Consensus 56 ~~~p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~W 122 (131)
T cd05493 56 ELPPLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPW 122 (131)
T ss_pred CCCcccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccc
Confidence 3458999999999999999999999999999998887777777788888788899999999999994
|
ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine. |
| >PF13892 DBINO: DNA-binding domain | Back alignment and domain information |
|---|
Probab=91.35 E-value=4.1 Score=45.24 Aligned_cols=64 Identities=20% Similarity=0.245 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhchHHHHHHHHHHhhcCCCcchHHHHHHHHHhHhhhHHHHHHhhhhh
Q 000099 839 NRGVAKYHERILREFSKRKDDDRNKRMEALKNNDVERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKI 916 (2240)
Q Consensus 839 ~r~v~~~h~~~~~~~~kr~~~~~~~rl~~lk~~d~e~y~~ll~~~k~~~~~d~~~r~~~l~~LL~qte~~l~~l~~~v 916 (2240)
.|.+..|-.+.++++.....+..++.++..+.+++.. + . +.+..+|.+||+|||.|.|+++.++
T Consensus 70 ~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~~--e----~--------~rq~~rl~fLl~QTElfsHF~~~k~ 133 (139)
T PF13892_consen 70 MREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEKR--E----A--------KRQQRRLNFLLTQTELFSHFMQNKA 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH--H----H--------HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3556666666666655444445556666665554321 1 1 1222458899999999999998654
|
|
| >KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.04 Score=78.49 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=47.1
Q ss_pred cccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000099 1733 TQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (2240)
Q Consensus 1733 ~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1782 (2240)
+.|| .+++.+..|+||.||++||||++ |..+|.-|.|.+..++.-|+.+
T Consensus 1319 awPFlepVn~~~vp~Y~~IIk~Pmdl~t-ir~k~~~~~Y~~~eef~~Di~l 1368 (1404)
T KOG1245|consen 1319 AWPFLEPVNPKEVPDYYDIIKKPMDLST-IREKLSKGIYPSPEEFATDIEL 1368 (1404)
T ss_pred cchhhccCChhhcccHHHHhcChhHHHH-HHHHHhcccCCCHHHHHHHHHH
Confidence 5788 99999999999999999999999 9999999999999999999997
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=91.24 E-value=2.6 Score=54.42 Aligned_cols=156 Identities=17% Similarity=0.136 Sum_probs=80.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhc
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~ 1099 (2240)
...+|+-.+|+|||.+++.++.++....+. .++++|.-..--.--...+..|+..+.+-+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g-~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------- 281 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGK-KKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------- 281 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEECCccHHHHHHHHHHHHHHhCCce-------------------
Confidence 345788899999999998887776511222 345555422100000122333321111100
Q ss_pred CCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchh---HHHHHhhc--cccceEEEeecCCCCCCHHHHHHHHhh
Q 000099 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDR--YRCQRRLLLTGTPLQNDLKELWSLLNL 1174 (2240)
Q Consensus 1100 ~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~S---KlskaLk~--Lks~~RLLLTGTPLQNnL~ELwSLLnF 1174 (2240)
.++.+...+......+. .+++||||.+-+...... .+...+.. ......|+|++|.-.+.+.+++..+..
T Consensus 282 ---~~~~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~ 356 (424)
T PRK05703 282 ---EVVYDPKELAKALEQLR--DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSR 356 (424)
T ss_pred ---EccCCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCC
Confidence 11112222222222222 589999999876533221 22222331 233557889999988888888888887
Q ss_pred hccc-c----------cCChHHHHhhhcCCcccCCCC
Q 000099 1175 LLPE-V----------FDNRKAFHDWFSQPFQKEGPT 1200 (2240)
Q Consensus 1175 LlP~-i----------F~S~~sF~e~F~kPf~~~g~~ 1200 (2240)
+.+. + |+..-.+......|+...+..
T Consensus 357 ~~~~~vI~TKlDet~~~G~i~~~~~~~~lPv~yit~G 393 (424)
T PRK05703 357 LPLDGLIFTKLDETSSLGSILSLLIESGLPISYLTNG 393 (424)
T ss_pred CCCCEEEEecccccccccHHHHHHHHHCCCEEEEeCC
Confidence 6552 1 233334444455666654433
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.63 E-value=1.2 Score=59.50 Aligned_cols=41 Identities=20% Similarity=0.074 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..|...+..+ .+. |+..+.|+|||..+..+...+..
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 455555555444432 233 79999999999999888877664
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.7 Score=58.42 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=25.9
Q ss_pred cCcceEecccccccCC-chhHHHHHhhccccceEEEeecCC
Q 000099 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
.+|+++||||+|+|-. ....+.+.|.......+++|+.|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence 3689999999999843 223345555554445567777663
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=90.22 E-value=3.1 Score=57.34 Aligned_cols=52 Identities=23% Similarity=0.270 Sum_probs=35.1
Q ss_pred cCCCccCCCCCcHHHHHHHHHHHH-hhc-CCC-CeE-EEcCCCchHHHHHHHHHHHHHH
Q 000099 991 RQPSMLRAGTLRDYQIVGLQWMLS-LYN-NKL-NGI-LADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 991 ~qPs~L~ggtLRPYQleGLqwLls-L~~-n~l-nGI-LADEMGLGKTIQAIALIa~Lle 1045 (2240)
-+|..|. =|+-|..-|..++. ... .+. ++| |...+|+|||.++-.++..|.+
T Consensus 752 YVPD~LP---hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 752 VVPKYLP---CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred cCCCcCC---ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3455553 47888887755554 332 222 333 8999999999999888877654
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=90.14 E-value=1.4 Score=58.98 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..+...+..+ ..-||....|+|||..+..+...|..
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 444444444444333 23588999999999999888877764
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.81 E-value=1.4 Score=57.43 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=19.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Ll 1044 (2240)
-||..+.|+|||..|-++...+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 38999999999998877776654
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=89.76 E-value=1.8 Score=47.94 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCC--CCeEEEcCCCC
Q 000099 1379 SLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQS--ADTVIIYDPDP 1426 (2240)
Q Consensus 1379 s~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQa--ADtVIifD~pW 1426 (2240)
...+...+++.|.....+ .+|+++....+|||++. +..||+.-.|+
T Consensus 32 ~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 32 DGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred ChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 334578899999863221 47788777999999996 78999998775
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=89.67 E-value=2 Score=53.46 Aligned_cols=44 Identities=30% Similarity=0.244 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHHHh-hcC--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSL-YNN--KLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1002 RPYQleGLqwLlsL-~~n--~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|+.|++.|...+.- ... ..+.+|..+.|+|||..+-.++..+.+
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 77788777555432 222 245789999999999998888877654
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.38 Score=63.77 Aligned_cols=164 Identities=15% Similarity=0.209 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHH-HHHH---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSE-LHKW---LP 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~E-f~Kw---~P 1074 (2240)
...|||.+.++-|..-. -....+.-..-+|||.+.+.+|.|.+. ...+|+|+|.|+. +...|..+ |... .|
T Consensus 16 ~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~--~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp 91 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSID--QDPGPMLYVQPTDDAAKDFSKERLDPMIRASP 91 (557)
T ss_pred CCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEE--eCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCH
Confidence 68899999987766422 234577778899999998888888875 4458999999976 56667643 4333 34
Q ss_pred CCeEEEEe-cchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccC----CchhHHH---HHhh
Q 000099 1075 SVSCIYYV-GAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK----DRESVLA---RDLD 1146 (2240)
Q Consensus 1075 slkVvvy~-GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLK----N~~SKls---kaLk 1146 (2240)
.++-.+.. ...+....++. .....-.+.++...+ ...|.....++||+||..++- +....+. .-..
T Consensus 92 ~l~~~~~~~~~~~~~~t~~~--k~f~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~ 165 (557)
T PF05876_consen 92 VLRRKLSPSKSRDSGNTILY--KRFPGGFLYLVGANS----PSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTK 165 (557)
T ss_pred HHHHHhCchhhcccCCchhh--eecCCCEEEEEeCCC----CcccccCCcCEEEEechhhccccCccCCCHHHHHHHHHh
Confidence 33322222 01111111111 111122344444322 245777889999999999983 2233333 3334
Q ss_pred ccccceEEEeecCCCCCCHHHHHHHHh
Q 000099 1147 RYRCQRRLLLTGTPLQNDLKELWSLLN 1173 (2240)
Q Consensus 1147 ~Lks~~RLLLTGTPLQNnL~ELwSLLn 1173 (2240)
.|.....+++..||.......++.++.
T Consensus 166 tf~~~~K~~~~STPt~~~~~~I~~~~~ 192 (557)
T PF05876_consen 166 TFGSNRKILRISTPTIEGTSRIERLYE 192 (557)
T ss_pred hhccCcEEEEeCCCCCCCCCHHHHHHH
Confidence 555677999999998876666666554
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.36 E-value=2.2 Score=51.55 Aligned_cols=66 Identities=21% Similarity=0.263 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
.-.+...+.-++..++.+.|.+|....|+|||..++|+...+. .++ .+++++.=..++.++...+.
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHHh
Confidence 3344555555555566788889999999999999999998887 332 35666665556655554443
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=2.9 Score=55.54 Aligned_cols=146 Identities=18% Similarity=0.148 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHH-HHHHHH---HHCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELH---KWLP 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~Q-W~~Ef~---Kw~P 1074 (2240)
..|.|+|...+.+|.. ... .++.-.=..|||..+.++++++.-..+ ...+++++|..--.. -.+.+. +-.|
T Consensus 58 f~L~p~Q~~i~~~~~~---~R~-~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK---NRF-NACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHhc---CeE-EEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 4799999998887632 222 355556789999998877666554333 347788888432111 112222 2223
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhh-cccc--c
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRC--Q 1151 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk-~Lks--~ 1151 (2240)
.+........ .+..+ .. .....|.+.|- +.........+++||||+|.+++.. .++..+. .+.. .
T Consensus 133 ~l~~~~i~~~--~~~~I---~l-~NGS~I~~lss-----~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~lasg~~ 200 (534)
T PHA02533 133 DFLQPGIVEW--NKGSI---EL-ENGSKIGAYAS-----SPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISSGRS 200 (534)
T ss_pred HHhhcceeec--CccEE---Ee-CCCCEEEEEeC-----CCCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHcCCC
Confidence 2110000000 00000 00 11122222221 1233455678899999999998753 3333332 2322 2
Q ss_pred eEEEeecCCC
Q 000099 1152 RRLLLTGTPL 1161 (2240)
Q Consensus 1152 ~RLLLTGTPL 1161 (2240)
.++++..||-
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 4688888883
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.24 E-value=1.5 Score=55.22 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|...+..+...+..+ .+. ||..+.|+|||..+-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 455555555444432 234 8999999999998888776664
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=89.08 E-value=4.3 Score=52.69 Aligned_cols=115 Identities=21% Similarity=0.211 Sum_probs=88.6
Q ss_pred ccHHHHHH-HHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000099 1327 CGKLWILD-RILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (2240)
Q Consensus 1327 SGKLelLd-rIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS 1403 (2240)
..++.... .+|+.+. ....++|||+..--..-.|..+|+..++.|+.++--++..+-.++-..|..+ ...++|+|
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G--~~~iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG--RKPILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC--CceEEEEE
Confidence 34555544 4788777 3457899998776666678999999999999999999999999999999965 45577777
Q ss_pred ccccc-ccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCC
Q 000099 1404 IRAAG-RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ 1443 (2240)
Q Consensus 1404 TrAGG-eGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQ 1443 (2240)
-++-= .=..+.++.+||+|.+|-+|.-|.-.+.-...-.+
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~ 398 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSG 398 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhccccc
Confidence 55421 23457779999999999999999988866655443
|
; GO: 0005634 nucleus |
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.88 E-value=2.6 Score=55.50 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..+......+. +. |+..+.|+|||..+.+++..+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4444555544443332 23 89999999999999888877764
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=88.72 E-value=8.4 Score=49.62 Aligned_cols=153 Identities=14% Similarity=0.147 Sum_probs=83.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec-h---HHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP-N---AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP-~---SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei 1096 (2240)
..+|...+|+|||..+..+...+.. . ...+++|.- + ..+.||.. |+...
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~-~--GkkVglI~aDt~RiaAvEQLk~----yae~l-------------------- 295 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHG-K--KKTVGFITTDHSRIGTVQQLQD----YVKTI-------------------- 295 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-c--CCcEEEEecCCcchHHHHHHHH----Hhhhc--------------------
Confidence 3478889999999998887776653 2 234555553 1 24555553 22111
Q ss_pred hhcCCcEE-EEcHHHHHHhhhhccc-cCcceEecccccccCCchhH---HHHHhhccccc-eEEEeecCCCCCCHHHHHH
Q 000099 1097 AALKFNVL-VTTYEFIMYDRSKLSK-VDWKYIIIDEAQRMKDRESV---LARDLDRYRCQ-RRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1097 ~~~~fdVV-ITTYE~L~kD~s~L~k-ikWd~VIIDEAHrLKN~~SK---lskaLk~Lks~-~RLLLTGTPLQNnL~ELwS 1170 (2240)
++.++ +.+...+.+....+.. .++++||||-+=+..+.... +...+...... ..|.|++|--.+.+.++..
T Consensus 296 ---gipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 296 ---GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred ---CCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 12222 2233344333333432 36899999988775433322 22223222222 3456888866667777777
Q ss_pred HHhhhccc-----------ccCChHHHHhhhcCCcccCCCCCCC
Q 000099 1171 LLNLLLPE-----------VFDNRKAFHDWFSQPFQKEGPTHNA 1203 (2240)
Q Consensus 1171 LLnFLlP~-----------iF~S~~sF~e~F~kPf~~~g~~~~~ 1203 (2240)
.|+.+... .++..-.+...+..|+...+.....
T Consensus 373 ~F~~~~idglI~TKLDET~k~G~iLni~~~~~lPIsyit~GQ~V 416 (436)
T PRK11889 373 NFKDIHIDGIVFTKFDETASSGELLKIPAVSSAPIVLMTDGQDV 416 (436)
T ss_pred HhcCCCCCEEEEEcccCCCCccHHHHHHHHHCcCEEEEeCCCCC
Confidence 66654332 1344445666677787765544443
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.69 E-value=2.9 Score=51.10 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=26.4
Q ss_pred CcceEecccccccCCch--hHHHHHhhccccceEEEeecCCC
Q 000099 1122 DWKYIIIDEAQRMKDRE--SVLARDLDRYRCQRRLLLTGTPL 1161 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~~--SKlskaLk~Lks~~RLLLTGTPL 1161 (2240)
..++|||||+|++.... ..+...+..+....++++|++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 46799999999983322 23334455556667888888643
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=88.63 E-value=2.3 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.053 Sum_probs=19.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
.+.+|..+.|+|||-.+.++..++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4569999999999988777666554
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.73 Score=58.27 Aligned_cols=142 Identities=16% Similarity=0.205 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHHHhCCC-------CCeEEEechHHHHHHHHHHHHHCC
Q 000099 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLMEFKGNY-------GPHLIIVPNAVLVNWKSELHKWLP 1074 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle~kg~~-------GP~LIVVP~SLL~QW~~Ef~Kw~P 1074 (2240)
|..+...+...+..+. .-|+..+.|+|||..+.++..+++...... ...|.+|+..-...|.. ..-.|
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~--~~~HP 101 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA--AGAHG 101 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH--ccCCC
Confidence 5566666666555432 247899999999999999999988533211 12344555432223321 11125
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhcc----ccCcceEecccccccCC-chhHHHHHhhccc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKD-RESVLARDLDRYR 1149 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrLKN-~~SKlskaLk~Lk 1149 (2240)
++.++.-...... .+. .-.| +.+.++.-..++. .-.|.+|||||+|+|-. ....+.+.+....
T Consensus 102 Dl~~i~~~~~~~~-~~~--------~~~I---~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 102 GLLTLERSWNEKG-KRL--------RTVI---TVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred CeEEEeccccccc-ccc--------cccc---cHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 5554432110000 000 0011 2233322222221 23789999999999842 2224555555544
Q ss_pred cceE-EEeecCC
Q 000099 1150 CQRR-LLLTGTP 1160 (2240)
Q Consensus 1150 s~~R-LLLTGTP 1160 (2240)
.... |++|-.|
T Consensus 170 ~~~~~IL~t~~~ 181 (365)
T PRK07471 170 ARSLFLLVSHAP 181 (365)
T ss_pred CCeEEEEEECCc
Confidence 4444 4444444
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=88.59 E-value=3 Score=50.22 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=30.2
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
+.+|....|+|||..+.+++.++... ...+++|. +..|...+.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~it----~~~l~~~l~ 143 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLR---GKSVLIIT----VADIMSAMK 143 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEE----HHHHHHHHH
Confidence 55899999999999999999888752 23455553 344555544
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=88.41 E-value=3.6 Score=54.59 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=26.6
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
.|.++||||+|+|... ...+.+.|.......+++|++|-
T Consensus 117 ~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 117 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 6899999999999532 23455555555555677777653
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=88.36 E-value=1.4 Score=51.30 Aligned_cols=133 Identities=21% Similarity=0.247 Sum_probs=67.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
.+|.-.+|.|||-++.-+.+++... ...+.+|+--.--.--.++++.|+..+.+-++.-.....
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~------------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESD------------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSC-------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchh-------------
Confidence 3688899999999998888887753 345556653221111223344443222222222110000
Q ss_pred cEEEEcHHHHHHhhhhccccCcceEecccccccCCchh---HHHHHhhcc-ccceEEEeecCCCCCCHHHHHHHHhhh
Q 000099 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRY-RCQRRLLLTGTPLQNDLKELWSLLNLL 1175 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~S---KlskaLk~L-ks~~RLLLTGTPLQNnL~ELwSLLnFL 1175 (2240)
.-+.+......+...++++|+||-+-+..+... .+...+... .....|.|++|--+..+..+......+
T Consensus 68 -----~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 68 -----PAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp -----HHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred -----hHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 001111222334445689999999877654332 222222233 344577888886555555555544444
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=88.32 E-value=2.2 Score=45.76 Aligned_cols=38 Identities=37% Similarity=0.459 Sum_probs=26.2
Q ss_pred CcceEecccccccCCchhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
.-.+|||||+|++.+....+-..+... ....+++||+-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHhc-cCceEEEEccc
Confidence 567899999999976444333333322 45689999984
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=88.19 E-value=1.6 Score=54.54 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
.++|+|....+.++.. ..-.+ -|+..+.|+|||..+..+...++-
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 3688888888888764 22223 368899999999999999888775
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=3.9 Score=55.22 Aligned_cols=41 Identities=17% Similarity=0.011 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..|...+..+. .-|+..+.|+|||..+.+++..|..
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 4444555554444432 3389999999999999988887764
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.94 E-value=4.1 Score=53.56 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=25.4
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
+++++||||+|.+... ...+.+.|.......+++|+.|-
T Consensus 116 ~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte 155 (491)
T PRK14964 116 KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE 155 (491)
T ss_pred CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence 6889999999999542 22344445444455567776664
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=87.85 E-value=1.5 Score=43.59 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=33.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHH-hCCCCCeEEEechHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEF-KGNYGPHLIIVPNAVLVN 1064 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~-kg~~GP~LIVVP~SLL~Q 1064 (2240)
.+|-...|+|||.+++..+.+++.. .....++|||+|+....+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 4668899999999999999999853 222568999999875444
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.82 E-value=1.6 Score=58.47 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=20.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
-|+..+.|+|||..+..+...+..
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhccc
Confidence 467999999999999888877754
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.7 Score=48.21 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCCccEEEEeccc--ccccCCCCC--CCeEEEcCCCC
Q 000099 1382 DRESAIVDFNSHDSDCFIFLLSIRA--AGRGLNLQS--ADTVIIYDPDP 1426 (2240)
Q Consensus 1382 EReeaIk~FNs~Ds~~fVfLLSTrA--GGeGLNLQa--ADtVIifD~pW 1426 (2240)
+..++++.|+........+|+++.- .++||||+. +..||+.-.|+
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4478899998632211235666655 899999997 78999988885
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.57 E-value=2.4 Score=52.88 Aligned_cols=151 Identities=14% Similarity=0.127 Sum_probs=80.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Psl 1076 (2240)
.++|+|....+.+...+..+. + -|+..+.|+||+..+.+++..++-....... .|+. .+|... .-.|++
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~---~c~~---c~~~~~--g~HPD~ 75 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAA---AQRT---RQLIAA--GTHPDL 75 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCC---cchH---HHHHhc--CCCCCE
Confidence 589999999988888765433 2 3788999999999999998888753211111 1221 111110 112554
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhcc----ccCcceEecccccccCC-chhHHHHHhhccccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~ 1151 (2240)
.++...-.....+ ..-. ...+.++.-...+. .-.++++|||+|++|.. ....+.++|..-...
T Consensus 76 ~~i~~~p~~~~~k---------~~~~---I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~ 143 (319)
T PRK08769 76 QLVSFIPNRTGDK---------LRTE---IVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPG 143 (319)
T ss_pred EEEecCCCccccc---------cccc---ccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCC
Confidence 4442110000000 0000 11222222111111 12689999999999953 334566666666666
Q ss_pred eEEEeecCCCCCCHHHHHH
Q 000099 1152 RRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwS 1170 (2240)
..++|++.-...-+.-|.+
T Consensus 144 ~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 144 RYLWLISAQPARLPATIRS 162 (319)
T ss_pred CeEEEEECChhhCchHHHh
Confidence 6677776643444444444
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=87.53 E-value=4.8 Score=50.46 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=33.8
Q ss_pred CCcHHHHHHHHHHHHhh----cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLY----NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~----~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
..+.+...++.++.... ..+.+.+|..++|+|||..+.+++..++.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 56666666666554322 24566789999999999999998888875
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=87.39 E-value=1.5 Score=51.94 Aligned_cols=39 Identities=15% Similarity=0.203 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHH
Q 000099 1003 DYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~l-nGILADEMGLGKTIQAIALIa 1041 (2240)
+.+..++..+......+. ..+|..+.|+|||..+-.++.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 344556666554444433 368899999999977765543
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.31 E-value=2.8 Score=55.71 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..+...+..+. + -|+..+.|+|||..+..++.++..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3344444444443322 2 478999999999999888877653
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.08 E-value=4.4 Score=54.41 Aligned_cols=40 Identities=18% Similarity=0.062 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhcCCCC---eEEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKLN---GILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~ln---GILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|...+.+|...+..+.- -||..+.|+|||..+..++..+.
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 55566666655544322 28999999999999988877665
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.00 E-value=6.6 Score=47.71 Aligned_cols=39 Identities=26% Similarity=0.498 Sum_probs=25.6
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
...+|||||+|.+... ...+...+..+....+++|+++.
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~ 141 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNY 141 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 4679999999999542 23445555555555677777653
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.67 E-value=4.9 Score=53.89 Aligned_cols=113 Identities=20% Similarity=0.215 Sum_probs=57.6
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhH-hHHHHHHHhhcCC
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQR-SRLFSQEVAALKF 1101 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeR-k~l~~qei~~~~f 1101 (2240)
|+..+-|+|||..+..+..++....+..+...-.|+ -+.+|.. .....++.+.|..... ..+
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~------~c~~i~~-g~~~d~~eid~~s~~~v~~i---------- 104 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP------PCVEITE-GRSVDVFEIDGASNTGVDDI---------- 104 (576)
T ss_pred EEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH------HHHHHhc-CCCCCeeeeeccCccCHHHH----------
Confidence 789999999999998888777643221111111222 1223332 1233444444432100 000
Q ss_pred cEEEEcHHHHHHhhhhc-cccCcceEecccccccCC-chhHHHHHhhccccceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKL-SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L-~kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGT 1159 (2240)
..+....... ...+|+++||||+|.|-. ....+.+.|.......+++|+.|
T Consensus 105 -------r~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 105 -------RELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred -------HHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 0111111111 123689999999999853 23345555555555556666555
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.57 E-value=3.4 Score=55.73 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..|...+.++. +. |+...-|+|||..+..+...|..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4555555555554332 33 88999999999999888777653
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=86.35 E-value=1.6 Score=53.80 Aligned_cols=42 Identities=19% Similarity=0.020 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhh--cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1004 YQIVGLQWMLSLY--NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1004 YQleGLqwLlsL~--~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
+|...|+-|.... +...+-++..+.|+|||-+++++...|..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 5777776665433 34455688999999999999988877653
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.31 E-value=3.2 Score=54.81 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=28.1
Q ss_pred cCcceEecccccccCC-chhHHHHHhhccccceEEEeecCCCCCCH
Q 000099 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTPLQNDL 1165 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTPLQNnL 1165 (2240)
-+|+++||||+|.|.. ....+.+.|.......+++|..|-...-+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~ 163 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch
Confidence 3789999999999853 22334455555555566666656433333
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=86.30 E-value=4.1 Score=56.17 Aligned_cols=126 Identities=16% Similarity=0.108 Sum_probs=72.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Pslk 1077 (2240)
+..|-+-|.+++..++. .+.-.+|....|+|||.++-+++..+.. . ...+++++|+.....-..+- + ++.
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~-~--g~~V~~~ApTg~Aa~~L~~~---~-g~~ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEA-A--GYRVIGAALSGKAAEGLQAE---S-GIE 419 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHh-C--CCeEEEEeCcHHHHHHHHhc---c-CCc
Confidence 34789999999988764 2234689999999999887665544332 2 34688888987543322211 0 000
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHH--hhhhccccCcceEecccccccCCchhHHHHHhhc-cccceEE
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY--DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQRRL 1154 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~k--D~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~-Lks~~RL 1154 (2240)
. .|...+.. ..........++|||||+..+-. ..+...+.. .....+|
T Consensus 420 a---------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~--~~~~~Ll~~~~~~~~kl 470 (744)
T TIGR02768 420 S---------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGS--RQMARVLKEAEEAGAKV 470 (744)
T ss_pred e---------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCH--HHHHHHHHHHHhcCCEE
Confidence 0 01111100 00011123678999999998743 223333432 2456789
Q ss_pred EeecCCCC
Q 000099 1155 LLTGTPLQ 1162 (2240)
Q Consensus 1155 LLTGTPLQ 1162 (2240)
+|.|=|-|
T Consensus 471 iLVGD~~Q 478 (744)
T TIGR02768 471 VLVGDPEQ 478 (744)
T ss_pred EEECChHH
Confidence 99996643
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=86.29 E-value=5.3 Score=47.45 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=19.9
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
.+|..+.|+|||-.+.++...+.+
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 589999999999888887766654
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=85.80 E-value=5.8 Score=48.27 Aligned_cols=45 Identities=22% Similarity=0.207 Sum_probs=31.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWK 1066 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~ 1066 (2240)
+.+.+|..++|+|||..+.+++.++... ..+++++.-..++..+.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~~i~ 158 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLNRIK 158 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHHH
Confidence 3457899999999999999988888753 24555554334444333
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=85.67 E-value=0.83 Score=54.12 Aligned_cols=102 Identities=25% Similarity=0.345 Sum_probs=56.3
Q ss_pred cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHH
Q 000099 1017 NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (2240)
Q Consensus 1017 ~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei 1096 (2240)
.|-.|-|++...|+|||..+.++...|+-.. .++-+.+.- ..++
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~~-----------------~ke~vLELN----------ASde--------- 89 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGDS-----------------YKEAVLELN----------ASDE--------- 89 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhChh-----------------hhhHhhhcc----------Cccc---------
Confidence 3456779999999999998888877665310 111111110 0011
Q ss_pred hhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCch-hHHHHHhhccccceEEEe
Q 000099 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLL 1156 (2240)
Q Consensus 1097 ~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~-SKlskaLk~Lks~~RLLL 1156 (2240)
...|||-.+.-.|...+-.|...+++.||+|||+-|.... -.+.+.+.-|....|++|
T Consensus 90 --RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 90 --RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred --cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhh
Confidence 1223333333344444455667789999999999985422 233344444444444443
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.35 E-value=3.1 Score=50.53 Aligned_cols=119 Identities=18% Similarity=0.132 Sum_probs=60.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
-||+.+.|+|||..+.++...+..........-..| ..+...-..|.|++..+.-.+... .
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~lel~~s~~~~--------------~ 87 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC-----RSCKLIPAGNHPDFLELNPSDLRK--------------I 87 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch-----hhhhHHhhcCCCceEEecccccCC--------------C
Confidence 588999999999999999888774332221111111 111111222222222211111110 0
Q ss_pred cEEEEcHHHHHHhhhhcc-ccCcceEecccccccCC-chhHHHHHhhccccceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKLS-KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~-kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGT 1159 (2240)
+|++.-+..+........ ...|.+||||||+.|.. ....+.+.+.......+++|+..
T Consensus 88 ~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 88 DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 111111111111111111 25799999999999943 33455566666677778877764
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=85.23 E-value=4.2 Score=53.44 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|...+..+.....++ .++ |++.+.|+|||..+..+...+.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 444445555444433 233 6899999999988877766554
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=85.11 E-value=5.1 Score=52.95 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=73.8
Q ss_pred hhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEE
Q 000099 1324 VKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLL 1402 (2240)
Q Consensus 1324 irsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLL 1402 (2240)
...+||.++...++......|.+|||.+.....+..+.+.|+.. +..+..++|.++..+|.+...+...++.+ |++
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVV 81 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVI 81 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEE
Confidence 45689999988888888888999999999999888888777654 77888999999999998887777655444 566
Q ss_pred ecccccccCCCCCCCeEEEcC
Q 000099 1403 SIRAAGRGLNLQSADTVIIYD 1423 (2240)
Q Consensus 1403 STrAGGeGLNLQaADtVIifD 1423 (2240)
.|+.+-. +-+...+.||+-+
T Consensus 82 GTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 82 GTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CChHHHc-CcccCCCEEEEEC
Confidence 7665322 3455667777654
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=85.06 E-value=3.6 Score=51.33 Aligned_cols=131 Identities=18% Similarity=0.144 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhhcCC--CCe-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEE
Q 000099 1004 YQIVGLQWMLSLYNNK--LNG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIY 1080 (2240)
Q Consensus 1004 YQleGLqwLlsL~~n~--lnG-ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvv 1080 (2240)
.|...+..+...+..+ .+. |+..+-|+|||..+..++..+.......+...=.|+ ....-.....|++..+.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~-----~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCT-----NCKRIDSGNHPDVHLVA 84 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCH-----HHHHHhcCCCCCEEEec
Confidence 4555666666555433 234 899999999999998888777643211111111221 11111222345555544
Q ss_pred EecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhcc----ccCcceEecccccccCC-chhHHHHHhhccccceEEE
Q 000099 1081 YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLL 1155 (2240)
Q Consensus 1081 y~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLL 1155 (2240)
..|.. .+.+.++.....+. .-.++++||||+|+|.. ....+.+.|..-.....++
T Consensus 85 ~~~~~--------------------i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~I 144 (329)
T PRK08058 85 PDGQS--------------------IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAI 144 (329)
T ss_pred ccccc--------------------CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEE
Confidence 43321 11122222111111 13689999999999953 2334556666655666777
Q ss_pred eecC
Q 000099 1156 LTGT 1159 (2240)
Q Consensus 1156 LTGT 1159 (2240)
|+.+
T Consensus 145 l~t~ 148 (329)
T PRK08058 145 LLTE 148 (329)
T ss_pred EEeC
Confidence 7665
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=85.00 E-value=3.7 Score=50.79 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=29.0
Q ss_pred hhhccccCcceEecccccccCC-chhHHHH---Hhhcccc--ceEEEeecCC
Q 000099 1115 RSKLSKVDWKYIIIDEAQRMKD-RESVLAR---DLDRYRC--QRRLLLTGTP 1160 (2240)
Q Consensus 1115 ~s~L~kikWd~VIIDEAHrLKN-~~SKlsk---aLk~Lks--~~RLLLTGTP 1160 (2240)
...|..+...+|||||.|++.. ...+... +|+.+.. .--+.+.||+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 3567778999999999999743 3333333 3333322 2346677885
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.97 E-value=5 Score=51.30 Aligned_cols=41 Identities=15% Similarity=-0.025 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..+...+.++ .+ -|+..+.|+|||..|.++...+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444444433 22 478999999999999888777653
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=84.96 E-value=5.7 Score=50.68 Aligned_cols=124 Identities=17% Similarity=0.135 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEV 1096 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~P--slkVvvy~GskdeRk~l~~qei 1096 (2240)
+...+|...+|+|||.++..++..+....+. ..+.+|+-...-..=.+.+..|+. ++.+...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~--------------- 200 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV--------------- 200 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceEec---------------
Confidence 4556899999999999998888776543222 345555532221111223333321 1111111
Q ss_pred hhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc-----ccceEEEeecCCCCCCHHHHHH
Q 000099 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-----RCQRRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1097 ~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-----ks~~RLLLTGTPLQNnL~ELwS 1170 (2240)
.+...+......+ .+.++|+||++=+.-.. ..+...+..+ .....|.|++|--...+.+++.
T Consensus 201 ---------~~~~~l~~~l~~l--~~~DlVLIDTaG~~~~d-~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 201 ---------KDGGDLQLALAEL--RNKHMVLIDTIGMSQRD-RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred ---------CCcccHHHHHHHh--cCCCEEEEcCCCCCccc-HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 1111121112222 24689999998665322 2233333333 2345788999976666666543
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.86 E-value=6.8 Score=50.87 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=55.0
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
.+|..+.|+|||..+-++...+.+... ...++.|....++..+...+.. +
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~~~-----------~------------------ 200 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNALRN-----------N------------------ 200 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHc-----------C------------------
Confidence 578999999999998888777765321 2234444433343333333321 0
Q ss_pred cEEEEcHHHHHHhhhhccccCcceEecccccccCCch---hHHHHHhhcc-ccceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~---SKlskaLk~L-ks~~RLLLTGT 1159 (2240)
+.+.+. ..+. ..++|||||.|.+.+.. ..+...+..+ .....+++|++
T Consensus 201 -----~~~~~~---~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 201 -----TMEEFK---EKYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred -----cHHHHH---HHHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 011111 1222 47799999999986533 2344444443 23345777775
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=84.77 E-value=5.2 Score=54.60 Aligned_cols=137 Identities=15% Similarity=0.091 Sum_probs=70.7
Q ss_pred HhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCC-CeEEEe-ch-----HHHHHHHHHHHHHCCCCeEEEEecchh
Q 000099 1014 SLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG-PHLIIV-PN-----AVLVNWKSELHKWLPSVSCIYYVGAKD 1086 (2240)
Q Consensus 1014 sL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~G-P~LIVV-P~-----SLL~QW~~Ef~Kw~PslkVvvy~Gskd 1086 (2240)
.+...+.-.|+--++|+|||.++...|+.-+....... .-.+|| |. +++....+|=..-.. .++.|. -
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g--~tvgy~---v 462 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVG--ETCGYN---V 462 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhc--cccccc---c
Confidence 33444666788899999999999888876554333222 112232 33 333333333211111 111111 1
Q ss_pred hHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc----ccceEEEeecCC
Q 000099 1087 QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGTP 1160 (2240)
Q Consensus 1087 eRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L----ks~~RLLLTGTP 1160 (2240)
.+.. ......--++.+|.+.+.+.... -.....++|+||.|..--..--+...+..+ +.-+.+++++|=
T Consensus 463 Rf~S----a~prpyg~i~fctvgvllr~~e~-glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatI 535 (1282)
T KOG0921|consen 463 RFDS----ATPRPYGSIMFCTVGVLLRMMEN-GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATI 535 (1282)
T ss_pred cccc----cccccccceeeeccchhhhhhhh-cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhccc
Confidence 1100 11112234677888777654322 123567899999997643333344444444 333467888883
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.68 E-value=6.4 Score=47.90 Aligned_cols=27 Identities=33% Similarity=0.230 Sum_probs=23.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
+.+.+|..++|+|||..+.+++..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 456789999999999999888887765
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=84.67 E-value=2.4 Score=44.21 Aligned_cols=34 Identities=32% Similarity=0.376 Sum_probs=22.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL 1062 (2240)
||.-+.|+|||..+-.++.++ .-+++.|....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhc------ccccccccccccc
Confidence 678899999998876666543 1345555555554
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=84.66 E-value=4.9 Score=53.14 Aligned_cols=41 Identities=20% Similarity=0.062 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCC---CCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK---LNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~---lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|...+..+...+.++ ...||..+.|+|||..+-.+...+..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444433333 34689999999999999888776653
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.26 E-value=5 Score=53.26 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCC-C-Ce-EEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLYNNK-L-NG-ILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~-l-nG-ILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|...+..+...+..+ . +. |+..+.|+|||..+-.+...+.
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444444443332 2 33 8999999999988888777665
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=84.22 E-value=7.7 Score=50.47 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=25.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEec
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP 1058 (2240)
.+|..+.|+|||..+-++..++.+... ...++.|..
T Consensus 133 l~lyG~~G~GKTHLl~ai~~~l~~~~~-~~~v~yi~~ 168 (440)
T PRK14088 133 LFIYGGVGLGKTHLLQSIGNYVVQNEP-DLRVMYITS 168 (440)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEH
Confidence 589999999999988887777665322 234555543
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=83.76 E-value=8.4 Score=41.23 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=25.2
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
+|.-+.|+|||..+..++..+.. ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 67788999999999888776654 34567776643
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=83.63 E-value=7.5 Score=49.69 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=54.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
.+|..+.|+|||..+.++..++.+.. ....++.|.....+..+...+.. +
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~~~~~~~~~~-----------~------------------ 188 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFTNDFVNALRN-----------N------------------ 188 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHHHHHHHHHHc-----------C------------------
Confidence 47999999999999988887776532 12344554332222222222210 0
Q ss_pred cEEEEcHHHHHHhhhhccccCcceEecccccccCCch---hHHHHHhhcc-ccceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~---SKlskaLk~L-ks~~RLLLTGT 1159 (2240)
+.+.+. ..+. ..++|||||.|.+.+.. ..+...+..+ .....+++|++
T Consensus 189 -----~~~~~~---~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 189 -----KMEEFK---EKYR--SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred -----CHHHHH---HHHH--hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 111121 1121 36799999999986542 2344445443 33456778876
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=83.51 E-value=4.4 Score=51.97 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.1
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
-|+..+.|+|||..+.++...+..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 478999999999999888776654
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=83.43 E-value=8.4 Score=50.27 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=55.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
.+|..++|+|||..+-++..++..... ...++.|....++......+..-.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~~f~~~~~~~l~~~~---------------------------- 194 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGDEFARKAVDILQKTH---------------------------- 194 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHHhh----------------------------
Confidence 468999999999888777666654322 234555554444433333332100
Q ss_pred cEEEEcHHHHHHhhhhccccCcceEecccccccCCch---hHHHHHhhccc-cceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~---SKlskaLk~Lk-s~~RLLLTGT 1159 (2240)
..++.+ ...+ ...++|||||.|.+.+.. ..++..+..+. ....++||+.
T Consensus 195 ----~~~~~~---~~~~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 195 ----KEIEQF---KNEI--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred ----hHHHHH---HHHh--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 001111 1122 257899999999987532 23444555443 3346888854
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=83.15 E-value=6.1 Score=46.22 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=20.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
..+.+|..+.|+|||..+.++...+.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 44579999999999988877665544
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=83.15 E-value=6.8 Score=53.61 Aligned_cols=96 Identities=13% Similarity=0.122 Sum_probs=74.4
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEe
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLS 1403 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS 1403 (2240)
..+||......++......|.++||.+.....+..+.+.|... |..+..++|+++..+|.+...+...++.+ |+++
T Consensus 171 TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVg 247 (679)
T PRK05580 171 TGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIG 247 (679)
T ss_pred CCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEe
Confidence 4589999888787777778999999999999988877777653 78899999999999998888887765544 6677
Q ss_pred cccccccCCCCCCCeEEEcCC
Q 000099 1404 IRAAGRGLNLQSADTVIIYDP 1424 (2240)
Q Consensus 1404 TrAGGeGLNLQaADtVIifD~ 1424 (2240)
|+.+- =+.+.....||+-+-
T Consensus 248 Trsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 248 ARSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred ccHHh-cccccCCCEEEEECC
Confidence 76433 255667777776653
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=83.14 E-value=10 Score=47.90 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=28.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech----HHHHHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN----AVLVNWKSE 1068 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~----SLL~QW~~E 1068 (2240)
-.++....|+|||.++..+..++.. .+ ..++||... ....||..-
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~-~g--~~V~li~~Dt~R~~a~eqL~~~ 190 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKK-NG--FSVVIAAGDTFRAGAIEQLEEH 190 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH-cC--CeEEEecCCcCcHHHHHHHHHH
Confidence 3578899999999988777766653 22 355555532 344555443
|
|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=82.91 E-value=1.2 Score=50.33 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=27.1
Q ss_pred hcCCcEEEEcHHHHHHhhh--hc--cccCcceEecccccccCC
Q 000099 1098 ALKFNVLVTTYEFIMYDRS--KL--SKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1098 ~~~fdVVITTYE~L~kD~s--~L--~kikWd~VIIDEAHrLKN 1136 (2240)
....+|||++|.+|..... .+ ....-.+|||||||+|-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4567999999999986532 22 223557899999999854
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=82.91 E-value=5.9 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
-|++.+.|+|||..+.+++..+..
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhcc
Confidence 389999999999999888877764
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=82.81 E-value=13 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=18.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAY 1042 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~ 1042 (2240)
.+.+|..+.|+|||..+.++...
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHH
Confidence 45699999999999888665543
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=82.80 E-value=4.6 Score=50.73 Aligned_cols=137 Identities=12% Similarity=0.084 Sum_probs=74.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw-~Ps 1075 (2240)
.++|+|....+.+...+..+. ++ |++.+-|+||+..+.++..+++-..+..+...=.|+.. .-|... -|+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC------~~~~~g~HPD 75 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGC------QLMQAGTHPD 75 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH------HHHHcCCCCC
Confidence 478888888888888776543 23 68999999999999999988875332211111123322 111111 255
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhc----cccCcceEecccccccCC-chhHHHHHhhcccc
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRC 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L----~kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks 1150 (2240)
+..+.-.++.. ..+.+.++.-...+ ..-.|+++|||+|++|.. ....+.+.|..=..
T Consensus 76 ~~~i~p~~~~~------------------~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (334)
T PRK07993 76 YYTLTPEKGKS------------------SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPE 137 (334)
T ss_pred EEEEecccccc------------------cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCC
Confidence 44332221100 01111222111111 113789999999999953 33445555555444
Q ss_pred ceEEEeecCC
Q 000099 1151 QRRLLLTGTP 1160 (2240)
Q Consensus 1151 ~~RLLLTGTP 1160 (2240)
...++|+++=
T Consensus 138 ~t~fiL~t~~ 147 (334)
T PRK07993 138 NTWFFLACRE 147 (334)
T ss_pred CeEEEEEECC
Confidence 5566666553
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=82.76 E-value=5.9 Score=53.61 Aligned_cols=149 Identities=12% Similarity=0.161 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHH----HHHHHH-----HH
Q 000099 1003 DYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVN----WKSELH-----KW 1072 (2240)
Q Consensus 1003 PYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~Q----W~~Ef~-----Kw 1072 (2240)
|+=..-|+.++..|.++...++++ =|.|||..+..++.++....+ ..++|.+|.. +... -..-+. .|
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 344555788888898888877776 799999988877777664332 4688888832 2222 111222 57
Q ss_pred CCCCe-EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccc-c
Q 000099 1073 LPSVS-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-C 1150 (2240)
Q Consensus 1073 ~Pslk-Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lk-s 1150 (2240)
+|... ++...|+...-.-........+...+.+.+. ..+......+++||||||+-+.. ..+...+-.+. .
T Consensus 249 fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ar-----s~~s~RG~~~DLLIVDEAAfI~~--~~l~aIlP~l~~~ 321 (752)
T PHA03333 249 FPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLAS-----SPNAARGQNPDLVIVDEAAFVNP--GALLSVLPLMAVK 321 (752)
T ss_pred cCCCceEEEeeCCeeEEEEecCcccccCcceeEEecc-----cCCCcCCCCCCEEEEECcccCCH--HHHHHHHHHHccC
Confidence 77553 2323332211000000000001112222221 12334445789999999999965 23333332332 3
Q ss_pred ceEEEeecCCC
Q 000099 1151 QRRLLLTGTPL 1161 (2240)
Q Consensus 1151 ~~RLLLTGTPL 1161 (2240)
...+++.-||.
T Consensus 322 ~~k~IiISS~~ 332 (752)
T PHA03333 322 GTKQIHISSPV 332 (752)
T ss_pred CCceEEEeCCC
Confidence 45666666664
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=82.55 E-value=8.3 Score=45.66 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=19.5
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
.+|..+.|+|||-.+.++...+..
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~ 65 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLL 65 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 479999999999888777766654
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=82.51 E-value=9 Score=51.34 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=18.9
Q ss_pred EEEcCCCchHHHHHHHHHHHHHH
Q 000099 1023 ILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|++.+.|+|||..+-.+...+..
T Consensus 42 Lf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 42 LFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 77999999999988777766553
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=82.50 E-value=7.2 Score=54.42 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=20.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
..|.||..+.|+|||..+-++...+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 44679999999999998877765554
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=82.24 E-value=2.3 Score=50.97 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=65.2
Q ss_pred CcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHHHH-HHHHHHHHCCCCeE
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVLVN-WKSELHKWLPSVSC 1078 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~SLL~Q-W~~Ef~Kw~PslkV 1078 (2240)
|-+-|..+|.+ . ..+.++-..-|+|||.+.+.-+.+++... .....+|+|+.+....+ -...+...++...
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~- 73 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQ- 73 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccc-
Confidence 45678888877 2 34456666699999999999999998755 34567999998775322 3333333210000
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh----hhccccCcceEeccccc
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR----SKLSKVDWKYIIIDEAQ 1132 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~----s~L~kikWd~VIIDEAH 1132 (2240)
.....+. .+. ........+.|.|+..+.... .....+.-.+-|+|+..
T Consensus 74 --~~~~~~~--~~~--~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 74 --QESSDNE--RLR--RQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp --HCCTT-H--HHH--HHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred --ccccccc--ccc--ccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000000 010 111223468888988776531 22222344566777665
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=82.13 E-value=10 Score=45.24 Aligned_cols=38 Identities=24% Similarity=0.495 Sum_probs=25.4
Q ss_pred CcceEecccccccCCch---hHHHHHhhccc-cceEEEeecC
Q 000099 1122 DWKYIIIDEAQRMKDRE---SVLARDLDRYR-CQRRLLLTGT 1159 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~~---SKlskaLk~Lk-s~~RLLLTGT 1159 (2240)
..++||||+.|.+.+.. ..++..+..+. ...++++|+|
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 34789999999885432 33555555543 3567888887
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=81.91 E-value=9.5 Score=51.44 Aligned_cols=98 Identities=14% Similarity=0.245 Sum_probs=56.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcCC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKF 1101 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~f 1101 (2240)
.+|....|+|||-.+.++..++..... ...++.|.-..++..+...+.. +
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~~-g~~V~Yitaeef~~el~~al~~-----------~------------------ 366 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLYP-GTRVRYVSSEEFTNEFINSIRD-----------G------------------ 366 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEeeHHHHHHHHHHHHHh-----------c------------------
Confidence 578999999999888887777664222 2344555434444444333321 0
Q ss_pred cEEEEcHHHHHHhhhhccccCcceEecccccccCCch---hHHHHHhhcccc-ceEEEeecC
Q 000099 1102 NVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE---SVLARDLDRYRC-QRRLLLTGT 1159 (2240)
Q Consensus 1102 dVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~---SKlskaLk~Lks-~~RLLLTGT 1159 (2240)
.++.|. ..+. ..++||||+.|.+.+.. ..++..+..+.. ...|++|+.
T Consensus 367 -----~~~~f~---~~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 367 -----KGDSFR---RRYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred -----cHHHHH---HHhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 011111 1122 46899999999997643 335555555433 355777765
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=81.86 E-value=7.8 Score=44.08 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle 1045 (2240)
-||..+.|+|||..+..++..+..
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 478999999999999888887764
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=81.28 E-value=2.5 Score=47.33 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=34.3
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (2240)
.+|+.+.|+|||..++.++..... ...++++|.......+....+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCCHHHHHHHHHHc
Confidence 478899999999999988877663 235788888755555555444443
|
A related protein is found in archaea. |
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=81.04 E-value=5.1 Score=56.05 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhh--cCCCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1005 QIVGLQWMLSLY--NNKLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1005 QleGLqwLlsL~--~n~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
|..-|.+++... +...|.||..+.|+|||..+=.+...+.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 445577777643 3345679999999999988866665543
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=80.95 E-value=11 Score=47.75 Aligned_cols=44 Identities=32% Similarity=0.369 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHH-Hhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWML-SLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1002 RPYQleGLqwLl-sL~~--n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|+-+++-+.-.+ .... ...+.+|..+.|+|||..+-.++..+..
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 555555554443 2222 2356799999999999998888776654
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.78 E-value=5.1 Score=52.46 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=44.0
Q ss_pred CcHHHHHHHHHHHHhh--------cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHH
Q 000099 1001 LRDYQIVGLQWMLSLY--------NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHK 1071 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~--------~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~K 1071 (2240)
.+.+..+.+.|.+... ....+.||+...|+|||+.+-++...+ ..+++-|-...++..|.-|..+
T Consensus 250 ~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 250 AKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHHHhccccchHHH
Confidence 4445555555555322 234467999999999999987776522 2356655555899999988876
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.66 E-value=5.3 Score=50.04 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHHHhhcCCC--Ce-EEEcCCCchHHHHHHHHHHHHHHH
Q 000099 1001 LRDYQIVGLQWMLSLYNNKL--NG-ILADEMGLGKTVQVMALIAYLMEF 1046 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~l--nG-ILADEMGLGKTIQAIALIa~Lle~ 1046 (2240)
++|++....+.+...+..+. ++ |+..+.|+||+..+.++..+++-.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~ 51 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQ 51 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 57888888877877776543 34 688999999999999999888753
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.64 E-value=5.3 Score=48.45 Aligned_cols=110 Identities=23% Similarity=0.220 Sum_probs=56.6
Q ss_pred CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH------HHHHHHHHHHCCCCeEEEEecchhhHhHHHHH
Q 000099 1021 NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL------VNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (2240)
Q Consensus 1021 nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL------~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~q 1094 (2240)
-+.++.++|+|||+..=+++..+- ....++|+.|+.++ .-|..++.- -|... + ...+.
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~-~p~~~--~-------~~~~e-- 116 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLES-QPKVN--V-------NAVLE-- 116 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhcc-Cccch--h-------HHHHH--
Confidence 457889999999998874443332 22344567776544 336666543 11000 0 00000
Q ss_pred HHhhcCCcEEEEcHHHHHHhhhhcccc-CcceEecccccccCCchhHHHHHhhcc----ccceEEEeecCC
Q 000099 1095 EVAALKFNVLVTTYEFIMYDRSKLSKV-DWKYIIIDEAQRMKDRESVLARDLDRY----RCQRRLLLTGTP 1160 (2240)
Q Consensus 1095 ei~~~~fdVVITTYE~L~kD~s~L~ki-kWd~VIIDEAHrLKN~~SKlskaLk~L----ks~~RLLLTGTP 1160 (2240)
..-..-...+.+- +..+++|||+|.+....-...+.+..+ ...-+++|-|-|
T Consensus 117 --------------~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp 173 (269)
T COG3267 117 --------------QIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP 173 (269)
T ss_pred --------------HHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc
Confidence 0000011222223 347899999999865443333333333 333468888887
|
|
| >PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins | Back alignment and domain information |
|---|
Probab=80.63 E-value=9.4 Score=45.83 Aligned_cols=41 Identities=34% Similarity=0.547 Sum_probs=28.7
Q ss_pred CCchHHHHHHHHHHHHHHHhCCCCCeEEEe--chHHHHHHHHHHHH
Q 000099 1028 MGLGKTVQVMALIAYLMEFKGNYGPHLIIV--PNAVLVNWKSELHK 1071 (2240)
Q Consensus 1028 MGLGKTIQAIALIa~Lle~kg~~GP~LIVV--P~SLL~QW~~Ef~K 1071 (2240)
=|.|||-.+++|...+.. ++ ++++||= |+.-+..|.+-..+
T Consensus 11 GGaGKTT~~~~LAs~la~-~G--~~V~lIDaDpn~pl~~W~~~a~~ 53 (231)
T PF07015_consen 11 GGAGKTTAAMALASELAA-RG--ARVALIDADPNQPLAKWAENAQR 53 (231)
T ss_pred CCCcHHHHHHHHHHHHHH-CC--CeEEEEeCCCCCcHHHHHHhccc
Confidence 389999999888887765 22 3555554 77778899765544
|
In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA []. |
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.59 E-value=5 Score=50.62 Aligned_cols=46 Identities=20% Similarity=0.160 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCCe-EEEcCCCchHHHHHHHHHHHHHHH
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLNG-ILADEMGLGKTVQVMALIAYLMEF 1046 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~lnG-ILADEMGLGKTIQAIALIa~Lle~ 1046 (2240)
++|+|...-+.+..+.+.-.++ |+..+.|+|||..+..+...|...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~ 48 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCE 48 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 5788888877777764333334 678999999999999998888753
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=80.53 E-value=7.1 Score=48.88 Aligned_cols=146 Identities=14% Similarity=0.046 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH-CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKL---NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW-LPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l---nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw-~Ps 1075 (2240)
.++|+|....+.+...+..+. .-|+..+.|+||+..+..+..+++-.....++ .=.|+. +.-+... .|+
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~-Cg~C~s------C~~~~~g~HPD 75 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEA-CGFCHS------CELMQSGNHPD 75 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCHH------HHHHHcCCCCC
Confidence 478888888888887765443 23788999999999999998888753321111 001211 1111111 244
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhc----cccCcceEecccccccCC-chhHHHHHhhcccc
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMKD-RESVLARDLDRYRC 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L----~kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks 1150 (2240)
+.++.-.+... . .+.+.++.-...+ ..-.|+++|||+||+|.. ....+.++|..=..
T Consensus 76 ~~~i~p~~~~~---~---------------I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~ 137 (319)
T PRK06090 76 LHVIKPEKEGK---S---------------ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAP 137 (319)
T ss_pred EEEEecCcCCC---c---------------CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCC
Confidence 43332111000 0 1112222111111 123689999999999953 33445566666555
Q ss_pred ceEEEeecCCCCCCHHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwS 1170 (2240)
...++|+++-...-+.-+.|
T Consensus 138 ~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CeEEEEEECChhhChHHHHh
Confidence 55666666543343444444
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=80.19 E-value=9.6 Score=54.04 Aligned_cols=127 Identities=17% Similarity=0.084 Sum_probs=71.7
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Pslk 1077 (2240)
+..|-+-|.++|..++.- +.-.+|.-.-|+|||.+. ..+..+++.. ...+++++|+.....-..+ -.
T Consensus 344 g~~Ls~eQr~Av~~il~s---~~v~vv~G~AGTGKTT~l-~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e---~t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTDG---RDLGVVVGYAGTGKSAML-GVAREAWEAA--GYEVRGAALSGIAAENLEG---GS---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhcC---CCeEEEEeCCCCCHHHHH-HHHHHHHHHc--CCeEEEecCcHHHHHHHhh---cc----
Confidence 347999999999887741 223688889999999864 4444444432 2367888887754432211 00
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHH--hhhhccccCcceEecccccccCCchhHHHHHhhcc-ccceEE
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMY--DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRL 1154 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~k--D~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks~~RL 1154 (2240)
|... .|...+.. ..........++|||||+--+-. ..+...|... ....+|
T Consensus 411 -----Gi~a-------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~--~~m~~LL~~a~~~garv 464 (988)
T PRK13889 411 -----GIAS-------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT--RQLERVLSHAADAGAKV 464 (988)
T ss_pred -----Ccch-------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH--HHHHHHHHhhhhCCCEE
Confidence 1000 01111100 00011123568999999997743 2333444333 456799
Q ss_pred EeecCCCCC
Q 000099 1155 LLTGTPLQN 1163 (2240)
Q Consensus 1155 LLTGTPLQN 1163 (2240)
+|.|=|-|-
T Consensus 465 VLVGD~~QL 473 (988)
T PRK13889 465 VLVGDPQQL 473 (988)
T ss_pred EEECCHHHc
Confidence 999987543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2240 | ||||
| 3mwy_W | 800 | Crystal Structure Of The Chromodomain-atpase Portio | 9e-89 | ||
| 1z3i_X | 644 | Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMA | 3e-44 | ||
| 1z6a_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN | 3e-38 | ||
| 1z63_A | 500 | Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM | 4e-36 | ||
| 1z5z_A | 271 | Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal | 9e-08 |
| >pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 | Back alignment and structure |
|
| >pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF EUKARYOTIC Rad54 Length = 644 | Back alignment and structure |
|
| >pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 | Back alignment and structure |
|
| >pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 | Back alignment and structure |
|
| >pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain Length = 271 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 | Back alignment and structure |
|---|
Score = 628 bits (1621), Expect = 0.0
Identities = 199/642 (30%), Positives = 309/642 (48%), Gaps = 95/642 (14%)
Query: 962 RFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLN 1021
F + + Y+ E++ QP ++ G LRD+Q+ G+ WM L++ N
Sbjct: 198 HFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDN 257
Query: 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYY 1081
GILADEMGLGKTVQ +A I++L+ + GPH+I+VP + + W KW P ++CI Y
Sbjct: 258 GILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICY 317
Query: 1082 VGAKDQRSRLFSQE---------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQ 1132
+G + R + E +KFNVL+TTYE+I+ DR++L + W+++ +DEA
Sbjct: 318 MGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAH 377
Query: 1133 RMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQ 1192
R+K+ ES L L+ ++ R+L+TGTPLQN++KEL +L+N L+P F +
Sbjct: 378 RLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQD 437
Query: 1193 PFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRM 1252
E++ IH LH+ ++PF+LRR +DVE SLP K +LR +
Sbjct: 438 ------------------EEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVEL 479
Query: 1253 SAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL-- 1310
S +Q+ Y I K + +L N EL+K NHP L
Sbjct: 480 SDVQTEYYKNIL-----------TKNYSALTAGAKGGH-FSLLNIMNELKKASNHPYLFD 527
Query: 1311 -----------NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDI 1359
+ + L+ S GK+ +LD++L +L++ GHRVL+FS M ++LDI
Sbjct: 528 NAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDI 587
Query: 1360 LEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419
L +YL + + ++R+DGT R +I FNS DS+ F+FLLS RA G G+NL +ADTV
Sbjct: 588 LGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTV 647
Query: 1420 IIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDD 1479
+I+D D NP+ + QA+ARAHRIGQK V V
Sbjct: 648 VIFDSDWNPQADLQAMARAHRIGQKNHVMVY----------------------------- 678
Query: 1480 LAGKDRYI--GSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLH---- 1533
R + ++E + + K+ + +I+ G D ++ L
Sbjct: 679 -----RLVSKDTVEEEVL-ERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKF 732
Query: 1534 --DEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEEFG 1573
++ ++ +ED V D + G
Sbjct: 733 GAGNMFTATDNQKKLEDLNLDDVLNHAEDHVTTPDLGESHLG 774
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 | Back alignment and structure |
|---|
Score = 546 bits (1409), Expect = e-174
Identities = 156/584 (26%), Positives = 257/584 (44%), Gaps = 93/584 (15%)
Query: 998 AGTLRDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
+ LR +Q G++++ N I+ADEMGLGKT+Q + LI L++ + P
Sbjct: 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKP 112
Query: 1053 H----LIIVPNAVLVNWKSELHKWLPS-VSCIYYVGAKDQRS-----RLFSQEVAALKFN 1102
+++ P++++ NW +E+ KWL V + G SQ+ +
Sbjct: 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTP 172
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+ +YE L K +I DE R+K+ ++ L+ QRR+L++GTP+Q
Sbjct: 173 ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQ 232
Query: 1163 NDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
NDL E +SL++ + + + F F P K +D D E+ + L
Sbjct: 233 NDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQ---KLQELIS 289
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK 1282
I+ ++RR + + LP K+ V+ C ++ +Q +Y + K V
Sbjct: 290 IVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVS- 348
Query: 1283 NPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF----------------LVKS 1326
+ L+K CNHP L Y + F +
Sbjct: 349 -----------SLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQL 397
Query: 1327 CGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRES 1385
GK+ +LD IL + T +V+L S T+ LD+ E+ + R+ +Y R+DGT S++ R
Sbjct: 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAK 457
Query: 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445
+ FN+ S FIF+LS +A G GLNL A+ ++++DPD NP N+EQA+AR R GQK+
Sbjct: 458 IVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKK 517
Query: 1446 EVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYI--GSIEGLI--RNNIQQY 1501
IY R + G+IE I R Q +
Sbjct: 518 TCY-IY---------------------------------RLLSTGTIEEKILQR---QAH 540
Query: 1502 KIDMADEVINAGRFDQRT-THEERRMTLETLLHDEERYQETVHD 1544
K ++ V++ + +R + E R E +E+ +T HD
Sbjct: 541 KKALSSCVVDEEQDVERHFSLGELR---ELFSLNEKTLSDT-HD 580
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 364 bits (938), Expect = e-111
Identities = 127/462 (27%), Positives = 224/462 (48%), Gaps = 47/462 (10%)
Query: 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 1051
+P ++A LR YQI G WM + LAD+MGLGKT+Q +A+ + + +
Sbjct: 30 EPYNIKA-NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELT 87
Query: 1052 PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI 1111
P L+I P +VL NW+ EL K+ P + + + + +++++TTY +
Sbjct: 88 PSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKI--------KLEDYDIILTTYAVL 139
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSL 1171
+ D ++L +V+WKYI+IDEAQ +K+ ++ + + + + + R+ LTGTP++N + +LWS+
Sbjct: 140 LRD-TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSI 198
Query: 1172 LNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231
+ L P + + F F+ P +K D+ E L I+ PF+LRR
Sbjct: 199 MTFLNPGLLGSYSEFKSKFATPIKKG------DNMAKE---------ELKAIISPFILRR 243
Query: 1232 RVED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
D + LP K+ + C ++ Q+A+Y +D +R +
Sbjct: 244 TKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKR-------KGM 296
Query: 1290 VYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLL 1349
+ TL ++L++ +HP L + V+ GK+ I+ + G ++ +
Sbjct: 297 ILSTL----LKLKQIVDHPALLKG------GEQSVRRSGKMIRTMEIIEEALDEGDKIAI 346
Query: 1350 FSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
F+ + I+ ++ + G S ++R+ I F + + +LS++A G
Sbjct: 347 FTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN-NPSVKFIVLSVKAGG 405
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
G+NL SA+ VI +D NP E+QA R +RIGQ R V V
Sbjct: 406 FGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 266 bits (681), Expect = 2e-73
Identities = 98/633 (15%), Positives = 201/633 (31%), Gaps = 52/633 (8%)
Query: 981 LAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040
+ R +L +Q+ + + +LADE+GLGKT++ ++
Sbjct: 135 YSSEQFRMPYSGLRGQRT-SLIPHQLNIAHDVGRRHA--PRVLLADEVGLGKTIEAGMIL 191
Query: 1041 AYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100
+ G LIIVP + W E+ + ++ + + ++ +
Sbjct: 192 HQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NLRFALFDDERYAEAQHDAYNPFD-T 248
Query: 1101 FNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRESV------LARDLDRYRCQ 1151
+++ + +F + L + +W +++DEA + E L
Sbjct: 249 EQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL-AEHVP 307
Query: 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETE 1211
LLLT TP Q ++ ++ L LL P F + F + +
Sbjct: 308 GVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNY-----------CPVADAV 356
Query: 1212 KKVIIIHRL----HQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW----I 1263
++ ++L +L + + +E + + R + + +
Sbjct: 357 AMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRV 416
Query: 1264 KATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC--MELRKTCNHPLLNYPYFSDLSKD 1321
T KR + + Y+T M RK+ + Y + ++
Sbjct: 417 LFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQE 476
Query: 1322 FLVKSCGKLWILDRILIKL-----QRTGHRVLLFSTMTKLLDILEEYLQWRQ-LVYRRID 1375
F + W D + L +VL+ LE+ L+ R+ +
Sbjct: 477 FEGDN-ATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFH 535
Query: 1376 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAV 1435
S+ +R+ A F D+ LL G N Q A ++++D NP EQ +
Sbjct: 536 EGMSIIERDRAAAWFAEEDTGAQ-VLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRI 594
Query: 1436 ARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIR 1495
R RIGQ ++++ + ++ G E S+ +
Sbjct: 595 GRLDRIGQAHDIQIHVP---YLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLI 651
Query: 1496 NNIQQYKI-DMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRM 1554
N + + D++I R + + LL E L E
Sbjct: 652 NYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQA---LAESIEE 708
Query: 1555 IARSEDEVELFDQMDEEFGWIEEMTRYDQVPKW 1587
+ + + + G ++ + +
Sbjct: 709 QDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLT 741
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 2e-50
Identities = 36/229 (15%), Positives = 76/229 (33%), Gaps = 21/229 (9%)
Query: 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYK 1292
+ S L MS Q + D I + + D R + + + + +
Sbjct: 13 ATTLGISGNTSGDYWLPTTMSLYQKELTDQI-----VSLHYSDILRYFETSHYKEDVILE 67
Query: 1293 TLNNRCMELRKTCNHPLLNYPYFSDLSKDF------LVKSCGKLWILDRILIKLQRTGHR 1346
++ C+ HP L ++ S L ++ GK +L ++ +Q
Sbjct: 68 SMKTMCLNGSLVATHPYLLIDHYMPKSLITRDVPAHLAENSGKFSVLRDLINLVQEYETE 127
Query: 1347 VLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT--SLEDRESAIVDFNSHDSDCFIFLLSI 1404
+ + +D+LE L ++ +R DG + S + S+ F
Sbjct: 128 TAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAAANDFSCTVHLFSSEGINFTKYP 187
Query: 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEE-QAVARAHRI--GQKREVKVI 1450
+ D +I D + ++ Q + + R G +R ++
Sbjct: 188 IKSKAR-----FDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIV 231
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 3e-49
Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 20/233 (8%)
Query: 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKR 1278
H ++ R + LP K+ + C ++ Q+A+Y +D +
Sbjct: 5 HHHHHHSSGLVPRG-SHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIK 63
Query: 1279 RVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILI 1338
R + + TL ++L++ +HP L + V+ GK+ I+
Sbjct: 64 R-------KGMILSTL----LKLKQIVDHPALLKG------GEQSVRRSGKMIRTMEIIE 106
Query: 1339 KLQRTGHRVLLFSTMTKLLDILEEYLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDC 1397
+ G ++ +F+ + I+ ++ + G S ++R+ I F + +
Sbjct: 107 EALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN-NPSV 165
Query: 1398 FIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
+LS++A G G+NL SA+ VI +D NP E+QA R +RIGQ R V V
Sbjct: 166 KFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 8e-33
Identities = 80/501 (15%), Positives = 167/501 (33%), Gaps = 47/501 (9%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
R YQ V + N ++ GLGKT+ M + Y + G G L++ P
Sbjct: 9 QPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTLIAMMIAEYRLTKYG--GKVLMLAPT 61
Query: 1060 AVLVN-WKSELHKW--LPSVSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYD 1114
LV + LP + G K ++RS+ ++ + V+V T + I D
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA------RAKVIVATPQTIEND 115
Query: 1115 --RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR---LLLTGTPLQNDLKELW 1169
++S D I+ DEA R + + + R + + LT +P K +
Sbjct: 116 LLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIME 175
Query: 1170 SLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229
+ NL + + + D D + E + ++ L L+P
Sbjct: 176 VINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAE 235
Query: 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289
+E +P K + ++ + ++ ++
Sbjct: 236 TGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLS 295
Query: 1290 VYKTLNNRCMELRKTCN----HPLLNYPYFSDL-----SKDFLVKSCGKLWILDRILIKL 1340
+ + E K + + + + K+ L I+ +
Sbjct: 296 ALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQ 355
Query: 1341 --QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTT--------SLEDRESAIVDF 1390
++ ++++F+ + + L + +R G S +++ + +F
Sbjct: 356 LQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEF 415
Query: 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
+ + L++ GL++ D V+ Y+P P+ Q R R R + ++
Sbjct: 416 ARGEFNV---LVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILM 472
Query: 1451 YMEAVVDKI--SSHQKEDELR 1469
+ SS QKE ++
Sbjct: 473 AKGTRDEAYYWSSRQKEKIMQ 493
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 1e-23
Identities = 80/454 (17%), Positives = 148/454 (32%), Gaps = 98/454 (21%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
+LRDYQ L+ L + + G + G GKT MA I L P LI+VP
Sbjct: 92 ISLRDYQEKALERWLV--DKR--GCIVLPTGSGKTHVAMAAINEL------STPTLIVVP 141
Query: 1059 NAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK 1117
L WK L + + K+ + + V+TY+ + K
Sbjct: 142 TLALAEQWKERLGIFGEEYVGEFSGRIKELKP-------------LTVSTYDSAYVNAEK 188
Query: 1118 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLP 1177
L + +I DE + + RL LT T + D + L ++
Sbjct: 189 LGN-RFMLLIFDEVHHLPAE--SYVQIAQMSIAPFRLGLTATFEREDGRH-EILKEVVGG 244
Query: 1178 EVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVE 1237
+VF + K + + + +I P RVE
Sbjct: 245 KVF-----------------------ELFPDSLAGKHLAKYTIKRIFVPLAEDERVE--- 278
Query: 1238 GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNR 1297
+ +++A G ED + V + + R
Sbjct: 279 --------------YEKREKVYKQFLRARGITLRRAEDFNKIVMASGY---------DER 315
Query: 1298 CMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLL 1357
E + ++ S K+ L IL + ++++F T+
Sbjct: 316 AYEALRAWEE-----------ARRIAFNSKNKIRKLREILER--HRKDKIIIF---TRHN 359
Query: 1358 DILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSAD 1417
+++ + + I TS E+RE + F + F ++S + G+++ A+
Sbjct: 360 ELVYRIS--KVFLIPAITHRTSREEREEILEGFRTGR---FRAIVSSQVLDEGIDVPDAN 414
Query: 1418 TVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
+I + + Q + R R + ++ V+Y
Sbjct: 415 VGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 4e-21
Identities = 122/709 (17%), Positives = 209/709 (29%), Gaps = 236/709 (33%)
Query: 841 GVAKYHER-ILREFSK--RKDDDRNKRMEALKNNDV---ERYREMLLEQQTSIPGDAAER 894
G +Y + IL F + D + K+ + E +++ DA
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS--ILSKEEIDHIIMS------KDAVSG 63
Query: 895 -YAVLSSFLTQTEEYLYKLGSKITAAKNQQEVEEA--ANAAAAAARLQGLSEEEVRSAAA 951
+ + L++ EE + K VEE N + ++ E R +
Sbjct: 64 TLRLFWTLLSKQEEMVQKF------------VEEVLRINYKFLMSPIK----TEQRQPSM 107
Query: 952 CAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQW 1011
+ R+R D KY V R L+ LR Q
Sbjct: 108 MTRMYIEQRDRLY-----NDNQVFAKYN---------VSRLQPYLK---LR-------QA 143
Query: 1012 MLSLYNNKLNGILADEM-GLGKTVQVMALIAYL-------MEFK------GNYG-PHLII 1056
+L L K +L D + G GKT +AL L M+FK N P ++
Sbjct: 144 LLELRPAK--NVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 1057 VP-NAVLVNWKSELHKWLPSVSCIYYVG---AKDQRSRLFSQE--VAAL----------- 1099
+L S + + + RL + L
Sbjct: 200 EMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 1100 --KFN----VLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQR-MKDRES--VLARDLD- 1146
FN +L+TT + LS +I +D + E +L + LD
Sbjct: 259 WNAFNLSCKILLTTR-----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 1147 RYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDD 1206
R + R +LT P S++ + ++G D+
Sbjct: 314 RPQDLPREVLTTNPR------RLSIIAESI-------------------RDGLATW--DN 346
Query: 1207 W--LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSI---VLRCRMSAIQSAIYD 1261
W + +K II +LEP R+ + + PP I +L ++
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILL---------SLI- 395
Query: 1262 WIKATGTLRVDPED-----EKRR-VQKNP---------IY-----QAKVYKTLNNRCME- 1300
W + D K V+K P IY + + L+ ++
Sbjct: 396 WFDVI---KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 1301 ---LRKTCNHPLL-----NYPYF-----------SDLSKDFLVKSCGKLWILD-RIL-IK 1339
+ + L+ Y Y + F ++ LD R L K
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF------RMVFLDFRFLEQK 506
Query: 1340 LQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI-DGTTSLEDRESAIVDF-NSHDSDC 1397
++ ++ L L+ Y + I D E +AI+DF + +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPY-------ICDNDPKYERLVNAILDFLPKIEENL 559
Query: 1398 FI--FLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK 1444
+ +R A L + D I + AH+ Q+
Sbjct: 560 ICSKYTDLLRIA-----LMAEDEAIFEE--------------AHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.1 bits (199), Expect = 3e-15
Identities = 99/701 (14%), Positives = 212/701 (30%), Gaps = 215/701 (30%)
Query: 669 KYHGPLFDF-PFFTRKHD---------SVGSTA----MVNSSNNLTLAYDVKDLLSEEGL 714
+Y L F F D S+ S ++ S + ++ + L +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 715 EVLQKKRSENLKKISGILAVNLERKRIRPDLVLRLQIEQKKLRLLDLQSRLRDEVDQQQQ 774
E++QK E L+ L ++ ++ +P ++ R+ IEQ+ RL ++
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--------DRLYNDN----- 123
Query: 775 EIMAMPDRQYRK-FVRLCERQRVELMRQVQTSQKAMRE-------------KQ------L 814
+ + K V R++ +++ + +R K
Sbjct: 124 -------QVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 815 KSISQWRKKLLEAHWAIRDARTARNRGVAK-----YHERILREFSKRKDDDRN--KRMEA 867
S K + W + V + + +I ++ R D N R+ +
Sbjct: 172 LSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLY-QIDPNWTSRSDHSSNIKLRIHS 229
Query: 868 LKNNDV-----ERYREMLLEQQTSIPGDAAERYAVLSSFLTQTEEYLYKLGSKITAAKNQ 922
++ + Y LL + + ++F L KI
Sbjct: 230 IQAELRRLLKSKPYENCLL-----VLLNVQNA-KAWNAF---------NLSCKILLTTRF 274
Query: 923 QEVEEAANAAAAAA-----RLQGLSEEEVRSAAACAGEEVMIRNRFLEMNA---PRDGSS 974
++V + +AA L+ +EV+S ++L+ PR+
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL----------KYLDCRPQDLPRE--- 321
Query: 975 VNKYYSLAHAVNERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTV 1034
N R + S++ A ++RD W + +KL I+ E L
Sbjct: 322 -------VLTTNPRRL---SII-AESIRDGLATWDNW-KHVNCDKLTTII--ESSL---- 363
Query: 1035 QVMALIAYL--MEFKGNYGPHLIIVPNAVLVNWKSELHKWLPS-VSCIYYVGAKDQRSRL 1091
L E++ + L + P + +P+ + + + +
Sbjct: 364 ------NVLEPAEYRKMF-DRLSVFPPSA----------HIPTILLSLIWFDVIKSDVMV 406
Query: 1092 FSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKY-------IIIDEAQRMKDRESVLARD 1144
+ ++ S + K K I ++ ++++ ++
Sbjct: 407 VVNK----------------LHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 1145 LDRYRCQRRLLLTG-TPLQND----------LK-----ELWSLLNLLLPEVFDNRKAFHD 1188
+D Y + P D LK E +L ++ D R
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---LDFR----- 501
Query: 1189 WFSQPFQKEGPTHNADDDW------LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPP 1242
+ Q + + NA L+ K I + E R V + LP
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN--DPKYE-----RLVNAILDFLPK 554
Query: 1243 KVSIVLRCRMSAI-QSAIYDWIKATGTLRVDPEDEKRRVQK 1282
++ + + + + A+ + E+ ++VQ+
Sbjct: 555 IEENLICSKYTDLLRIALMA--EDEAIF----EEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 2e-13
Identities = 92/637 (14%), Positives = 192/637 (30%), Gaps = 201/637 (31%)
Query: 1020 LNGILADE-----MGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEL---HK 1071
IL+ E + V + + + K V + L +K
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE---------EMVQKFVEEVLRINYK 92
Query: 1072 WL----------PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV 1121
+L PS+ Y+ +QR RL++ K+NV + + + R L ++
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLEL 147
Query: 1122 -DWKYIIIDEAQRM----KDRESVLARD-LDRYRCQRRL------LLTG---TPLQNDLK 1166
K ++I + K + +A D Y+ Q ++ L +P + L+
Sbjct: 148 RPAKNVLI---DGVLGSGK---TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLE 200
Query: 1167 ELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ---- 1222
L LL + P +W S+ ++ E + ++ + ++
Sbjct: 201 MLQKLLYQIDP----------NWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPYENCLL 248
Query: 1223 ILEPFMLRRRVEDVEGSLPPKVSIV----LRCRMSAI--QSAIYDWIKATGTLRVDPEDE 1276
+L V++ + L C++ + D++ A T + +
Sbjct: 249 VL------LNVQNAK--------AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 1277 KRRVQKNPIYQAKVY--KTLNNRCMEL-RKTCN-HPLLNYPYFSDLSKDFLVKSCGKLWI 1332
+ + + K K L+ R +L R+ +P LS
Sbjct: 295 SMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRR-------LS------------- 331
Query: 1333 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT--TSLEDRESAIVDF 1390
+ + + D L + W+ + ++ +SL E A ++
Sbjct: 332 ----------------IIAESIR--DGLATWDNWKHVNCDKLTTIIESSLNVLEPA--EY 371
Query: 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450
+F S ++ + + D + V + H+
Sbjct: 372 RKMFDRLSVFPPSA-------HI-PTILLSLIWFDVIKSDVMVVVNKLHK---------- 413
Query: 1451 YMEAVVDKISSHQKEDELRSGGTV---DLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMAD 1507
++V+K KE T+ + +L K ++ R+ + Y I
Sbjct: 414 --YSLVEK---QPKE------STISIPSIYLELKVKLENEYALH---RSIVDHYNIPKT- 458
Query: 1508 EVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQ 1567
FD L D+ Y H L+ + + LF
Sbjct: 459 -------FDSDD--------LIPPYLDQYFYSHIGH---HLKN-----IEHPERMTLFRM 495
Query: 1568 MDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSK 1604
+ +F ++E+ R+D S + T+ L
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGS---ILNTLQQLKF 529
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 1e-09
Identities = 115/770 (14%), Positives = 214/770 (27%), Gaps = 276/770 (35%)
Query: 1368 QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPN 1427
Q Y+ I L E A VD + DC ++ L + I
Sbjct: 15 QYQYKDI-----LSVFEDAFVD----NFDCKDVQDMPKSI-----LSKEEIDHII----- 55
Query: 1428 PKNEEQAVARAHRI------GQKREVKVIYMEAVVDK-----ISSHQKEDELRSGGTVDL 1476
+ AV+ R+ Q+ V+ ++E V+ +S + E S T
Sbjct: 56 --MSKDAVSGTLRLFWTLLSKQEEMVQK-FVEEVLRINYKFLMSPIKTEQRQPSMMT--- 109
Query: 1477 EDDLAGKDRYIGSIEGLIRNN--IQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHD 1534
YI + L +N +Y N R + + R L L
Sbjct: 110 -------RMYIEQRDRLYNDNQVFAKY---------NVSRLQP---YLKLRQALLEL--R 148
Query: 1535 EERYQETVHDVP-----SL-QEVNRMIARSEDEVELFDQMDEEFG--WIEEMTRYDQVPK 1586
+ + V + +V S D F W+ + +
Sbjct: 149 PAKNV-LIDGVLGSGKTWVALDV----CLSYKVQCKMD-----FKIFWLN-LKNCNSP-- 195
Query: 1587 WLRASTKEVNATIANLSKKPSKNILFGSNIGVDSGEIETERKRGPKGKKYPN-------- 1638
+ + + + + SNI + I+ E +R K K Y N
Sbjct: 196 --ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 1639 --------------------YKEVDDEIGEYSEASSDERNGYPVQEEEGEIGEFEDDEYS 1678
+K+V D + + + + + DE
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT--------THISLDHHSMT-LTPDEVK 304
Query: 1679 GAVGAPLSNKDQS--EEDGPVCEG--------GYDYLRPSENTRNN--HVVEEAGSSGSS 1726
+ L + Q E V + +R T +N HV
Sbjct: 305 SLLLKYLDCRPQDLPRE---VLTTNPRRLSIIA-ESIRDGLATWDNWKHV---------- 350
Query: 1727 SNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAV-SGDSHMDHQQ- 1782
N +LT I+ SL+ LE P E + ++V +H+
Sbjct: 351 -NCDKLTTIIE-------SSLNVLE----------PAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 1783 SGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQM 1842
S W D + + V+ K+ + + ++P+E + + + S+ +
Sbjct: 393 SLIWF-DVIKSDVMVVVN-KLHKYSLVE-------KQPKESTIS---IP----SI---YL 433
Query: 1843 DNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNC 1902
+ K +L + + H R I + + + +
Sbjct: 434 ELK--VKLENEYAL--H-----------------------RSIVDHYNIPKTFDSD--DL 464
Query: 1903 MPGHTEDA------ADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEK 1956
+P + D H K I + + F D L+++I
Sbjct: 465 IPPY-LDQYFYSHIGHHLK-----NIEHPERMTLFRMVFLD---------FRFLEQKIRH 509
Query: 1957 EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRK----IDQRVDRLEYNGVMELVSDV-Q 2011
+ W N + L+ I + E LV+ +
Sbjct: 510 DST--------AW------NASGSILNTLQQLKFYKPYICDNDPKYE-----RLVNAILD 550
Query: 2012 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF-PDTD--FREARSAL 2058
F+ K + + S+ + DLL+IA + + F EA +
Sbjct: 551 FLPKIE------ENLICSK-------YTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 5e-04
Identities = 66/556 (11%), Positives = 148/556 (26%), Gaps = 190/556 (34%)
Query: 1550 EVNRMIARSEDEVELFDQ---MDEEFGWIEEMTRYDQVPKWLRASTKEVNATIANLSKKP 1606
E + +D + +F+ + + +++M + + S +E++ I +
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK--SI-----LSKEEIDHIIMSKDAVS 62
Query: 1607 SKNILFGSNIGVDSGEIETERKRGPK----GKKYPNYKEVDDEIGEYSEASSDERNGYPV 1662
LF + + ++++ + NYK + I S Y
Sbjct: 63 GTLRLFWT--------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 1663 QEEEGEIGEFEDDEYSGAVGAPLSNKDQSEEDGPVC---------EGGYDYLRPSENTRN 1713
Q + L N +Q V + + LRP++N
Sbjct: 115 QRD------------------RLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNV-- 153
Query: 1714 NHVVEEAGSSGSSSNSRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVS 1773
+++ SG + ++ + +M ++
Sbjct: 154 --LIDGVLGSGKTW-------------------VALDVCLSYKVQCKMDFKI-------- 184
Query: 1774 GDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRG 1833
W + ++ E VL ++ +K ++ P T R + S +H
Sbjct: 185 -----------FWLNLKNCNSPETVL--EMLQKLLYQIDPNWT-SRSDHSSNIKLRIHSI 230
Query: 1834 DSSLLPFQMDNKYPAQLRTDTEMKAHGESNSL---RHDQSEPSSKSRRNLPSRKIANA-- 1888
+ L Y N L N+ + K NA
Sbjct: 231 QAELRRLLKSKPYE---------------NCLLVLL------------NVQNAKAWNAFN 263
Query: 1889 PKSRASLKTGRLNCMPGHTEDA--ADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNV 1946
+ L T T D + I+ S + + + +
Sbjct: 264 LSCK-ILLT---------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 1947 -ISKLQRRIEKEGHQIVPLLTDL--------------WKRIETSGYVSGAGNNILD--LR 1989
L R E P + WK + I++ L
Sbjct: 314 RPQDLPR----EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-----TTIIESSLN 364
Query: 1990 KIDQRVDRLEYN-------------GVMELV------SDVQFMLKGAMQFYGFS---HEV 2027
++ R ++ ++ L+ SDV ++ + + +S +
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN---KLHKYSLVEKQP 421
Query: 2028 RSEARKVHDLFFDLLK 2043
+ + ++ +L
Sbjct: 422 KESTISIPSIYLELKV 437
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 1e-16
Identities = 39/170 (22%), Positives = 59/170 (34%), Gaps = 27/170 (15%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
+LRDYQ L+ L + G + G GKT MA I L P LI+VP
Sbjct: 92 ISLRDYQEKALERWLV--DK--RGCIVLPTGSGKTHVAMAAINELST------PTLIVVP 141
Query: 1059 NAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK 1117
L WK L + + K+ + + V+TY+ Y ++
Sbjct: 142 TLALAEQWKERLGIFGEEYVGEFSGRIKELK-------------PLTVSTYD-SAYVNAE 187
Query: 1118 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKE 1167
+ +I DE + + RL LT T + D +
Sbjct: 188 KLGNRFMLLIFDEVHHLPAE--SYVQIAQMSIAPFRLGLTATFEREDGRH 235
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 64.2 bits (155), Expect = 4e-10
Identities = 87/626 (13%), Positives = 185/626 (29%), Gaps = 72/626 (11%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKT-VQVMALIAYLMEFKGNYGPH-LIIV 1057
R+YQ+ + N I+ G GKT V ++ +L +F +
Sbjct: 13 KPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFA 68
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS 1116
+ KS K+ + + +++ ++++ T + ++ +
Sbjct: 69 NQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVE-NNDIIILTPQILVNNLK 127
Query: 1117 K---LSKVDWKYIIIDEAQRMKDRES---VLARDLDRYRCQRR------LLLTGTPLQND 1164
K S + +I DE + ++ LD+ + LT + D
Sbjct: 128 KGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 187
Query: 1165 LKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
K L+ + ++ + A + +E + + I + I+
Sbjct: 188 AKTTDEALDYIC-KLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYII 246
Query: 1225 EPFM--LRRRVEDVEGSLPPKVSIVLRCRMS-AIQSAIYDWIKATGTLRVDPEDEKRRVQ 1281
M + + L I R + + I KA ++ +DE+ R+
Sbjct: 247 AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRIC 306
Query: 1282 KNPIYQAKVYKTLNNRCMELRKTCNHPLLNY--------------PYFSDLSKDFLVKSC 1327
K + N+ + L+Y DL++ F K
Sbjct: 307 KALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQ 366
Query: 1328 G-------------KLWILDRILIK------LQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1368
KL L IL + T V + + L + +E +
Sbjct: 367 ELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF 426
Query: 1369 LVYRRIDGTTS--------LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI 1420
L + G L ++ + F S L++ A G+++ + VI
Sbjct: 427 LKPGILTGRGKTNQNTGMTLPAQKCILDAF--KASGDHNILIATSVADEGIDIAQCNLVI 484
Query: 1421 IYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDL 1480
+Y+ N Q R G K + + + + KE + D L
Sbjct: 485 LYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMYKEKMMN-----DSILRL 539
Query: 1481 AGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQE 1540
D + + L +++ D ++ + + + L D ++
Sbjct: 540 QTWDEAVFREKILHIQTHEKFIRDSQEKPKPVPDKENKKLLCRKCKALACYTADVRVIED 599
Query: 1541 TVHDVPSLQEVNRMIARSEDEVELFD 1566
+ V ++R + + F
Sbjct: 600 CHYTVLGDAFKECFVSRPHPKPKQFS 625
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 63.8 bits (154), Expect = 6e-10
Identities = 87/649 (13%), Positives = 180/649 (27%), Gaps = 85/649 (13%)
Query: 926 EEAANAAAAAARLQGLSEEEVRSAAACAGEEVMIRNRFLEMNAPRDGSSVNKYYSLAHAV 985
A+ ++ + ++V S A E+ + + A D + S A +
Sbjct: 178 TTGYYRASELWDIREDNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGI 237
Query: 986 NERVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME 1045
+ + R YQI Q ++ N ++ G GKT + + + +
Sbjct: 238 GKPPPVYETK----KARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQ 289
Query: 1046 --FKGNYGPHLIIVPNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFN 1102
G + + + K+ + + S + ++V +
Sbjct: 290 NMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE-DSD 348
Query: 1103 VLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ-------- 1151
++V T + ++ S + +I DE + RY Q
Sbjct: 349 IIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTT-GNHPYNVLMTRYLEQKFNSASQL 407
Query: 1152 -RRLLLTGTPL----QNDLKELWSLLNLL-------LPEVFDNRKAFHDWFSQPFQKEGP 1199
+ L LT + +N + + + +L + V +N + + ++P
Sbjct: 408 PQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRL 467
Query: 1200 THNADDDWLETEKKVI---IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQ 1256
+ + + I L + + G+ + IV+ R +
Sbjct: 468 VKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLL 527
Query: 1257 --------SAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY------KTLNNRCMELR 1302
S I + D + I A Y N EL
Sbjct: 528 QLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELE 587
Query: 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIK--LQRTGHRVLLFS----TMTKL 1356
+ KL L IL R LLF+ ++ L
Sbjct: 588 QHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSAL 647
Query: 1357 LDILEEYLQWRQLVYRRIDGTTS--------LEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408
+EE + + G L ++ + F S L++ A
Sbjct: 648 KKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF--KTSKDNRLLIATSVAD 705
Query: 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG----------------QKREVKVIYM 1452
G+++ + V++Y+ N Q R G + K M
Sbjct: 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVENEKCNRYKEEMM 765
Query: 1453 EAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQY 1501
V+KI +E + + +++ + R ++
Sbjct: 766 NKAVEKIQKWDEETFAKKIHNLQMKERVLRDSRRKEIKPKVVEGQKNLL 814
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 60.4 bits (145), Expect = 6e-09
Identities = 64/505 (12%), Positives = 134/505 (26%), Gaps = 71/505 (14%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME--FKGNYGPHLIIV 1057
R YQI Q ++ N ++ G GKT + + + + G + +
Sbjct: 248 KARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 303
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS 1116
+ K+ + + S + ++V +++V T + ++
Sbjct: 304 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFE 362
Query: 1117 K---LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR---------LLLTGTPLQND 1164
S + +I DE + RY Q+ L LT + +
Sbjct: 363 DGTLTSLSIFTLMIFDECHNTT-GNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGN 421
Query: 1165 LKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224
K + + + + + +E + K I + I+
Sbjct: 422 AKNIEETIEHIC-SLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480
Query: 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNP 1284
M E + ++ ++ + WI T + E + +
Sbjct: 481 SNLM--SETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRI 538
Query: 1285 IYQAKVYKTLNNRC-------------------------------MELRKTCNHPLLNYP 1313
+ + EL +
Sbjct: 539 CRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKE 598
Query: 1314 YFSDLSKDFLVKSCGKLWILDRILIK--LQRTGHRVLLFS----TMTKLLDILEEYLQWR 1367
KL L IL R LLF+ ++ L +EE
Sbjct: 599 PELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILN 658
Query: 1368 QLVYRRIDGTTS--------LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV 1419
+ + G L ++ + F + + + S+ A G+++ + V
Sbjct: 659 YIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV--ADEGIDIVQCNLV 716
Query: 1420 IIYDPDPNPKNEEQAVARAHRIGQK 1444
++Y+ N Q R G K
Sbjct: 717 VLYEYSGNVTKMIQVRGRGRAAGSK 741
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 8e-08
Identities = 71/510 (13%), Positives = 145/510 (28%), Gaps = 69/510 (13%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLME--FKGNYGPHLIIV 1057
R YQI Q ++ N ++ G GKT + + + + G + +
Sbjct: 7 KARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLA 62
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS 1116
+ K+ + + S + ++V +++V T + ++
Sbjct: 63 TKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE-DSDIIVVTPQILVNSFE 121
Query: 1117 K---LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR---------LLLTGTPLQND 1164
S + +I DE + RY Q+ L LT + +
Sbjct: 122 DGTLTSLSIFTLMIFDECHNT-TGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGN 180
Query: 1165 LKE----LWSLLNLL-------LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKK 1213
K + + +L + V +N + + ++P +
Sbjct: 181 AKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240
Query: 1214 VII---IHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAI--------QSAIYDW 1262
++ + I L + + G+ + IV+ R + +S I
Sbjct: 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRA 300
Query: 1263 IKATGTLRVDPEDEKRRVQKNPIYQAKVY------KTLNNRCMELRKTCNHPLLNYPYFS 1316
+ D + I A Y N EL +
Sbjct: 301 LFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPEL 360
Query: 1317 DLSKDFLVKSCGKLWILDRILIK--LQRTGHRVLLFS----TMTKLLDILEEYLQWRQLV 1370
KL L IL R LLF+ ++ L +EE +
Sbjct: 361 IALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIK 420
Query: 1371 YRRIDGTTS--------LEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1422
+ G L ++ + F + + + S+ A G+++ + V++Y
Sbjct: 421 PGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV--ADEGIDIVQCNLVVLY 478
Query: 1423 DPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452
+ N Q R + K I +
Sbjct: 479 EYSGNVTKMIQVRGRG----RAAGSKCILV 504
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 9e-08
Identities = 61/516 (11%), Positives = 147/516 (28%), Gaps = 79/516 (15%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLII--V 1057
R+YQ+ N I+ G GKT + + + ++ ++
Sbjct: 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFA 59
Query: 1058 PNAVLVN-WKSELHKWLPSVSCIYYVGA---KDQRSRLFSQEVAALKFNVLVTTYEFIMY 1113
+ + ++ + Y + + S + ++++ T + ++
Sbjct: 60 NQIPVYEQQATVFSRYFERLG--YNIASISGATSDSVSVQHIIE--DNDIIILTPQILVN 115
Query: 1114 DRSK---LSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQ----------RRLLLTGTP 1160
+ + S + +I DE + + + RY + + LT +
Sbjct: 116 NLNNGAIPSLSVFTLMIFDECHNT-SKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASV 174
Query: 1161 LQND----------LKELWSLLNL-LLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209
D + +L + L+ ++ V DN +P + + + +
Sbjct: 175 GVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234
Query: 1210 TEKKVI---IIHRLHQILEPFMLRRRVEDVEGSLPPKVSIV--LRCRMSAIQSAI----- 1259
+ + E ++++ E + + S Q A
Sbjct: 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEES 294
Query: 1260 --YDWIKATGTLRVDPEDEKRRVQKNPIYQAKVY------KTLNNRCMELRKTCNHPLLN 1311
+ + D + + A Y E +
Sbjct: 295 RVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEE 354
Query: 1312 YPYFSDLSKDFLVKSCGKLWILDRILIK--LQRTGHRVLLFSTMTKLLDILEEYLQWR-- 1367
+ KL L +L + + + +LF L+D L+++++
Sbjct: 355 KLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPA 414
Query: 1368 -----------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 1416
+ R G T + S D++ L++ A G+++
Sbjct: 415 LSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNI---LIATSVADEGIDIAEC 471
Query: 1417 DTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452
+ VI+Y+ N Q R + R+ K +
Sbjct: 472 NLVILYEYVGNVIKMIQTRGRG----RARDSKCFLL 503
|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 3e-06
Identities = 21/115 (18%), Positives = 46/115 (40%)
Query: 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEY 2000
++ ++ + +LT L TS + LDL + +++D+ Y
Sbjct: 60 CTERHPAEWRLALEKELQISLKQVLTALLNSRTTSHLLRYRQQQPLDLEGVKRKMDQGNY 119
Query: 2001 NGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREAR 2055
V+E D+ +++ A+ G E++ V F ++ FP +++R
Sbjct: 120 TSVLEFSDDIVKIIQAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVKKSR 174
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
Score = 50.7 bits (120), Expect = 5e-06
Identities = 19/199 (9%), Positives = 57/199 (28%), Gaps = 10/199 (5%)
Query: 1273 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWI 1332
P + ++ + + K+ E Y ++ + +
Sbjct: 282 PVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKG----KTYQEEI--KIITGLSKRNKW 335
Query: 1333 LDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392
+ ++ IKL + + + + ++ + G E R +
Sbjct: 336 IAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAEN 395
Query: 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452
I + S G+++++ V++ + Q + R R + + ++
Sbjct: 396 --GKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVW- 452
Query: 1453 EAVVDKISSHQKEDELRSG 1471
++D K +
Sbjct: 453 -DLIDDAGVKPKSANTKKK 470
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 1e-05
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 26/98 (26%)
Query: 768 EVDQQQQEIMAMPD--RQYRKFVRLCERQRVEL-MRQVQTSQK--AMREKQLKSISQWRK 822
+ D+ QE P+ R++R E QR L + REK K + +W +
Sbjct: 76 QADRLTQE----PESIRKWR------EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ 125
Query: 823 KLLEAHWAIRDARTARNRGVAKYHERILREFSKRKDDD 860
+ E + NR K F ++ D D
Sbjct: 126 RQSEQ----VEKNKINNRIADK-------AFYQQPDAD 152
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393
+L LQ+T VL+F+ +D + EYL + + I G E+R AI F
Sbjct: 44 VYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 103
Query: 1394 DSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442
D L++ A +GL+ + VI YD P+ E V HRIG
Sbjct: 104 KKD---VLVATDVASKGLDFPAIQHVINYD---MPEEIENYV---HRIG 143
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2240 | |||
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 100.0 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 100.0 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 100.0 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.98 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.97 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.97 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.97 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.97 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 99.97 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.97 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.97 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.96 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.96 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.96 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.95 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.95 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.95 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.95 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.94 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.94 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.94 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.93 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.92 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.91 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 99.91 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 99.91 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.9 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.9 | |
| 2dat_A | 123 | Possible global transcription activator SNF2L2; br | 99.9 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.89 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.89 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 99.89 | |
| 3mb4_A | 124 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.89 | |
| 3iu5_A | 116 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.88 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.88 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.88 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.88 | |
| 3mqm_A | 126 | Probable histone-lysine N-methyltransferase ASH1L; | 99.88 | |
| 3ljw_A | 120 | Protein polybromo-1; alpha helix, alternative spli | 99.87 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 99.87 | |
| 3k2j_A | 130 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.85 | |
| 3tlp_A | 150 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.85 | |
| 2grc_A | 129 | Probable global transcription activator SNF2L4; br | 99.85 | |
| 2yyn_A | 135 | Transcription intermediary factor 1-alpha; bromo d | 99.84 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.83 | |
| 3g0l_A | 117 | Hwalp4, bromodomain adjacent to zinc finger domain | 99.83 | |
| 3d7c_A | 112 | General control of amino acid synthesis protein 5; | 99.82 | |
| 3iu6_A | 147 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 99.81 | |
| 3mb3_A | 135 | PH-interacting protein; PHIP, pleckstrin homology | 99.81 | |
| 3q2e_A | 123 | Bromodomain and WD repeat-containing protein 1; st | 99.81 | |
| 2oss_A | 127 | HUNK1 protein, bromodomain-containing protein 4; B | 99.8 | |
| 2i7k_A | 117 | Bromodomain-containing protein 7; helix, LEFT-hand | 99.79 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.79 | |
| 2d9e_A | 121 | Peregrin; four-helix bundle, transcription activat | 99.79 | |
| 1e6i_A | 121 | Transcriptional activator GCN5; gene regulation, b | 99.79 | |
| 3jvl_A | 120 | Bromodomain-containing protein 4; alpha helical, N | 99.78 | |
| 2ouo_A | 130 | HUNK1 protein, bromodomain-containing protein 4; B | 99.78 | |
| 4alg_A | 154 | Bromodomain-containing protein 2; signaling protei | 99.78 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.78 | |
| 3nxb_A | 116 | CAT eye syndrome critical region protein 2; struct | 99.78 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.77 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 99.77 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.77 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.76 | |
| 3rcw_A | 135 | Bromodomain-containing protein 1; transcription, s | 99.76 | |
| 3p1f_A | 119 | CREB-binding protein; structural genomics consorti | 99.76 | |
| 3hme_A | 123 | Bromodomain-containing protein 9; BRD9, bromodomai | 99.76 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.76 | |
| 3fkm_X | 166 | Signaling protein; bromodomain, malaria, structura | 99.75 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.75 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 99.75 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.75 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 99.74 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.74 | |
| 3dai_A | 130 | ATPase family AAA domain-containing protein 2; anc | 99.73 | |
| 3uv4_A | 158 | Second bromodomain of human transcription initiat | 99.73 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 99.73 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.73 | |
| 2dkw_A | 131 | Hypothetical protein KIAA1240; bromodomain-like, f | 99.72 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.72 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.71 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.7 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.7 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.69 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.69 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.68 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.68 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.68 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.68 | |
| 2r0y_A | 311 | Chromatin structure-remodeling complex protein RSC | 99.66 | |
| 2r10_A | 361 | Chromatin structure-remodeling complex protein RSC | 99.65 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.64 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.64 | |
| 3uv5_A | 265 | Transcription initiation factor TFIID subunit 1; t | 99.64 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.64 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.63 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.63 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.62 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.62 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.61 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.4 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.6 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.6 | |
| 3aad_A | 292 | Transcription initiation factor TFIID subunit 1; p | 99.59 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.58 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.58 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.57 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.55 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.55 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.55 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.54 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.54 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.49 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.47 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.44 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.44 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.31 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.3 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.3 | |
| 3lqh_A | 183 | Histone-lysine N-methyltransferase MLL; PHD finger | 99.28 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 98.93 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 98.77 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 98.7 | |
| 3iu6_A | 147 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 98.66 | |
| 3ljw_A | 120 | Protein polybromo-1; alpha helix, alternative spli | 98.64 | |
| 3mqm_A | 126 | Probable histone-lysine N-methyltransferase ASH1L; | 98.55 | |
| 3mb4_A | 124 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 98.54 | |
| 2dat_A | 123 | Possible global transcription activator SNF2L2; br | 98.54 | |
| 3k2j_A | 130 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 98.51 | |
| 3iu5_A | 116 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 98.49 | |
| 3tlp_A | 150 | Protein polybromo-1; PB1, polybromo 1 isoform 1, B | 98.46 | |
| 2grc_A | 129 | Probable global transcription activator SNF2L4; br | 98.35 | |
| 3d7c_A | 112 | General control of amino acid synthesis protein 5; | 98.04 | |
| 2i7k_A | 117 | Bromodomain-containing protein 7; helix, LEFT-hand | 97.98 | |
| 1e6i_A | 121 | Transcriptional activator GCN5; gene regulation, b | 97.98 | |
| 2d9e_A | 121 | Peregrin; four-helix bundle, transcription activat | 97.97 | |
| 3g0l_A | 117 | Hwalp4, bromodomain adjacent to zinc finger domain | 97.96 | |
| 3nxb_A | 116 | CAT eye syndrome critical region protein 2; struct | 97.92 | |
| 3uv4_A | 158 | Second bromodomain of human transcription initiat | 97.9 | |
| 3mb3_A | 135 | PH-interacting protein; PHIP, pleckstrin homology | 97.9 | |
| 3hme_A | 123 | Bromodomain-containing protein 9; BRD9, bromodomai | 97.88 | |
| 3q2e_A | 123 | Bromodomain and WD repeat-containing protein 1; st | 97.87 | |
| 2oss_A | 127 | HUNK1 protein, bromodomain-containing protein 4; B | 97.85 | |
| 3rcw_A | 135 | Bromodomain-containing protein 1; transcription, s | 97.83 | |
| 3jvl_A | 120 | Bromodomain-containing protein 4; alpha helical, N | 97.79 | |
| 3dai_A | 130 | ATPase family AAA domain-containing protein 2; anc | 97.78 | |
| 2ouo_A | 130 | HUNK1 protein, bromodomain-containing protein 4; B | 97.78 | |
| 2ri7_A | 174 | Nucleosome-remodeling factor subunit BPTF; zinc fi | 97.76 | |
| 3p1f_A | 119 | CREB-binding protein; structural genomics consorti | 97.76 | |
| 4alg_A | 154 | Bromodomain-containing protein 2; signaling protei | 97.74 | |
| 3fkm_X | 166 | Signaling protein; bromodomain, malaria, structura | 97.53 | |
| 2yyn_A | 135 | Transcription intermediary factor 1-alpha; bromo d | 97.51 | |
| 2dkw_A | 131 | Hypothetical protein KIAA1240; bromodomain-like, f | 97.37 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.33 | |
| 3u5n_A | 207 | E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b | 97.22 | |
| 3o36_A | 184 | Transcription intermediary factor 1-alpha; TRIM24, | 97.21 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.1 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.04 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.95 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 96.8 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.7 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 96.54 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 95.28 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 95.25 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 94.83 | |
| 2ro1_A | 189 | Transcription intermediary factor 1-beta; KAP, TIF | 94.8 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 94.34 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 94.15 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 94.13 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 93.3 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 93.23 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 92.8 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 92.47 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 92.47 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 92.43 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 91.72 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 91.2 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 90.99 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 90.58 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 90.44 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 90.38 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 89.98 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 89.95 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 89.88 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 89.27 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 89.17 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 88.99 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 88.9 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 88.58 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 88.41 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 88.32 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 88.31 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 87.87 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 87.29 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 86.52 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 86.14 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 86.06 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 85.84 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 85.67 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 85.46 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 85.46 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 85.42 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 85.24 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 84.13 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 83.19 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 82.94 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 82.89 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 82.54 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 82.16 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 82.02 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 81.71 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 81.35 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 80.82 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 80.8 |
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-75 Score=767.74 Aligned_cols=468 Identities=40% Similarity=0.679 Sum_probs=396.0
Q ss_pred hhccCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000099 988 RVMRQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 988 ~v~~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (2240)
.+..+|..+.+++|||||++||+||+.++.++.||||||+||||||+++|++|.+++......+|+|||||.+++.||..
T Consensus 224 ~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~ 303 (800)
T 3mwy_W 224 KLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLD 303 (800)
T ss_dssp CCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHH
T ss_pred ccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHH
Confidence 44567888888899999999999999999999999999999999999999999999887888899999999999999999
Q ss_pred HHHHHCCCCeEEEEecchhhHhHHHHHH---------HhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCch
Q 000099 1068 ELHKWLPSVSCIYYVGAKDQRSRLFSQE---------VAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE 1138 (2240)
Q Consensus 1068 Ef~Kw~PslkVvvy~GskdeRk~l~~qe---------i~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~ 1138 (2240)
||.+|+|++.+++|+|....+..+.... .....++|+||||+++.++...|..+.|++|||||||++||..
T Consensus 304 E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~~ 383 (800)
T 3mwy_W 304 TFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNAE 383 (800)
T ss_dssp HHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCSS
T ss_pred HHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCch
Confidence 9999999999999999988776543322 2345789999999999999999999999999999999999999
Q ss_pred hHHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000099 1139 SVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (2240)
Q Consensus 1139 SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~ 1218 (2240)
+++++++..+.+.+||+|||||++|++.|||+||+||.|+.|.....|.-.. . . ......+.
T Consensus 384 s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~------~-----~-------~~~~~~~~ 445 (800)
T 3mwy_W 384 SSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN------Q-----D-------EEQEEYIH 445 (800)
T ss_dssp SHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C------C-----T-------THHHHHHH
T ss_pred hHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc------c-----c-------hhHHHHHH
Confidence 9999999999999999999999999999999999999999998765553110 0 0 11223467
Q ss_pred HHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHH
Q 000099 1219 RLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298 (2240)
Q Consensus 1219 RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nil 1298 (2240)
.|+.++.||++||++.+|...||++.+.++.|.|++.|+.+|+.+.......+.... ......+.+.+
T Consensus 446 ~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~------------~~~~~~~l~~l 513 (800)
T 3mwy_W 446 DLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA------------KGGHFSLLNIM 513 (800)
T ss_dssp HHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------------------CTHHHHH
T ss_pred HHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcc------------ccchhhHHHHH
Confidence 899999999999999999999999999999999999999999998775433322111 11223578899
Q ss_pred HHHHHHcCCCCCCCCCcccc-------------chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHH
Q 000099 1299 MELRKTCNHPLLNYPYFSDL-------------SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQ 1365 (2240)
Q Consensus 1299 mqLRKICNHP~L~~p~~~~l-------------s~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~ 1365 (2240)
+.||++|+||+++....... ....++..++|+.+|..+|..+...++||||||+|+.++++|+++|.
T Consensus 514 ~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~ 593 (800)
T 3mwy_W 514 NELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS 593 (800)
T ss_dssp HHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH
Confidence 99999999999875432110 11345678999999999999999999999999999999999999999
Q ss_pred hcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1366 WRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1366 ~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
.+|+.+++|||+++..+|.+++++|+++++.++|||+||++||+||||+.|++||+||++|||..++||+||+||+||++
T Consensus 594 ~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k 673 (800)
T 3mwy_W 594 IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKN 673 (800)
T ss_dssp HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCS
T ss_pred hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccccCcc
Q 000099 1446 EVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQR 1518 (2240)
Q Consensus 1446 eV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGkFD~k 1518 (2240)
+|.||+|++ .+|||+.|+++ +..|+.++..|++.|.++..
T Consensus 674 ~V~Vyrlv~--------------------------------~~TiEe~i~~~-~~~K~~l~~~vi~~~~~~~~ 713 (800)
T 3mwy_W 674 HVMVYRLVS--------------------------------KDTVEEEVLER-ARKKMILEYAIISLGVTDGN 713 (800)
T ss_dssp CEEEEEEEE--------------------------------TTSHHHHHHHH-HHHHTTSCC-----------
T ss_pred eEEEEEEec--------------------------------CCCHHHHHHHH-HHHHHHHHHHHHccCccccc
Confidence 999999976 37999999985 57899999999998877643
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-70 Score=706.05 Aligned_cols=467 Identities=30% Similarity=0.484 Sum_probs=388.7
Q ss_pred CCCcHHHHHHHHHHHHhh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechHHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNAVLVNWKSEL 1069 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~-----~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~SLL~QW~~Ef 1069 (2240)
..|||||++||.||+..+ .++.+|||||+||+|||+++|++|..++.... ..+++|||||.+++.||..||
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~E~ 133 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHHHH
Confidence 589999999999999876 46678999999999999999999999876443 245699999999999999999
Q ss_pred HHHCCC-CeEEEEec-chhhHhHHHHHHHh----hcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHH
Q 000099 1070 HKWLPS-VSCIYYVG-AKDQRSRLFSQEVA----ALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (2240)
Q Consensus 1070 ~Kw~Ps-lkVvvy~G-skdeRk~l~~qei~----~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlsk 1143 (2240)
.+|++. +.++.++| ....+...+..... ...++|+||||+++..+...|....|++|||||||++||..++.++
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~ 213 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYL 213 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHH
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHH
Confidence 999975 55665554 44333322222111 1257899999999999989999999999999999999999999999
Q ss_pred HhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 000099 1144 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223 (2240)
Q Consensus 1144 aLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhkl 1223 (2240)
++..+.+.+||+|||||++|++.|||+||+||.|++|++...|..+|..|+.......... .........+.+|+.+
T Consensus 214 al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~---~~~~~~~~~~~~L~~~ 290 (644)
T 1z3i_X 214 ALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD---KDRAAGEQKLQELISI 290 (644)
T ss_dssp HHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS---HHHHHHHHHHHHHHHH
T ss_pred HHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCH---HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887654333222 2223334457789999
Q ss_pred hhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH
Q 000099 1224 LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK 1303 (2240)
Q Consensus 1224 LrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRK 1303 (2240)
+.||++||++.++..+||++.+.+++|+|++.|+.+|+.+.......... ... .........++.||+
T Consensus 291 l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~-------~~g-----~~~~~~l~~l~~Lrk 358 (644)
T 1z3i_X 291 VNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL-------QTG-----KISVSSLSSITSLKK 358 (644)
T ss_dssp HHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS-------CTT-----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH-------hcC-----ccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887643221100 000 011345567889999
Q ss_pred HcCCCCCCCCCc-------cc--------c-chhhHhhcccHHHHHHHHHHHHHh-cCCeEEEEecchhHHHHHHHHHHh
Q 000099 1304 TCNHPLLNYPYF-------SD--------L-SKDFLVKSCGKLWILDRILIKLQR-TGHRVLLFSTMTKLLDILEEYLQW 1366 (2240)
Q Consensus 1304 ICNHP~L~~p~~-------~~--------l-s~d~LirsSGKLelLdrIL~kL~a-tGhKVLIFSQ~t~~LDiLed~L~~ 1366 (2240)
+|+||.++.... .. . ........++|+.+|+.+|..+.. .++|+||||+++.++++|+.+|..
T Consensus 359 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~ 438 (644)
T 1z3i_X 359 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN 438 (644)
T ss_dssp HHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHH
Confidence 999998753210 00 0 011223568999999999998864 589999999999999999999999
Q ss_pred cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcce
Q 000099 1367 RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (2240)
Q Consensus 1367 rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKe 1446 (2240)
.|+.+++|||+++.++|.+++++|++++...+|||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++
T Consensus 439 ~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 518 (644)
T 1z3i_X 439 RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 518 (644)
T ss_dssp HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999998777778999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEehhHHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000099 1447 VKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (2240)
Q Consensus 1447 V~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAG 1513 (2240)
|.||+|++ .++||++|++. +..|..+.+.|++.+
T Consensus 519 v~v~~lv~--------------------------------~~tiEe~i~~~-~~~K~~l~~~v~~~~ 552 (644)
T 1z3i_X 519 CYIYRLLS--------------------------------TGTIEEKILQR-QAHKKALSSCVVDEE 552 (644)
T ss_dssp EEEEEEEE--------------------------------TTSHHHHHHHH-HHHHHHTSCCCCSCS
T ss_pred eEEEEEEE--------------------------------CCCHHHHHHHH-HHHHHHHHHHHhcCc
Confidence 99999976 37999999984 577888877777654
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-65 Score=636.03 Aligned_cols=444 Identities=29% Similarity=0.516 Sum_probs=378.2
Q ss_pred CCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHH
Q 000099 993 PSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKW 1072 (2240)
Q Consensus 993 Ps~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw 1072 (2240)
|..+. .+|+|||.+|+.||..++..+.+|||||+||+|||+++++++..+.. .+..+++|||||.+++.||..||.+|
T Consensus 31 p~~~~-~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred Chhhh-ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEccHHHHHHHHHHHHHH
Confidence 55554 58999999999999998888899999999999999999999988874 45567999999999999999999999
Q ss_pred CCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccce
Q 000099 1073 LPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQR 1152 (2240)
Q Consensus 1073 ~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~ 1152 (2240)
+|.+.+.+++|.... .....++|+||||+.+.++.. +....|++|||||||+++|..+++++++..+.+.+
T Consensus 109 ~~~~~v~~~~g~~~~--------~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~ 179 (500)
T 1z63_A 109 APHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKY 179 (500)
T ss_dssp CTTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEE
T ss_pred CCCceEEEEecCchh--------ccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCc
Confidence 999999999887632 223568999999999987755 67789999999999999999999999999999999
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
+|+|||||++|++.|||++++||.|+.|++...|.++|..|+.... .....+|+.++.||++||+
T Consensus 180 ~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~---------------~~~~~~l~~~l~~~~lrr~ 244 (500)
T 1z63_A 180 RIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD---------------NMAKEELKAIISPFILRRT 244 (500)
T ss_dssp EEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC---------------HHHHHHHHHHHTTTEECCC
T ss_pred EEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc---------------HHHHHHHHHHHhhHeeeec
Confidence 9999999999999999999999999999999999999987765421 1134578899999999999
Q ss_pred hhh--hccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1233 VED--VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1233 KkD--VekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
+.+ +...||++.+.+++|+|++.|+.+|+.+.......+.... .......+...++.||++|+||.+
T Consensus 245 k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~lr~~~~~p~l 313 (500)
T 1z63_A 245 KYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVT-----------GIKRKGMILSTLLKLKQIVDHPAL 313 (500)
T ss_dssp TTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCC-----------THHHHHHHHHHHHHHHHHTTCTHH
T ss_pred ccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhh-----------cccchHHHHHHHHHHHHHhCCHHH
Confidence 976 6778999999999999999999999987654322211100 011234567788999999999987
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-CceEEeecCCCCHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-Giky~rLDGsTs~eEReeaIk~ 1389 (2240)
.... ...+..++|+..|..+|.++...++|+||||+++.+++.|.++|... |+.+.+++|+++.++|.+++++
T Consensus 314 ~~~~------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~ 387 (500)
T 1z63_A 314 LKGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISK 387 (500)
T ss_dssp HHCS------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHH
T ss_pred hcCc------cchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHH
Confidence 5321 22346789999999999999999999999999999999999999986 9999999999999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhc
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELR 1469 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~l 1469 (2240)
|+++ ..+.|||+||+++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++
T Consensus 388 F~~~-~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~--------------- 451 (500)
T 1z63_A 388 FQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS--------------- 451 (500)
T ss_dssp HHHC-TTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEE---------------
T ss_pred hcCC-CCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEe---------------
Confidence 9974 345688999999999999999999999999999999999999999999999999999976
Q ss_pred cCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000099 1470 SGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (2240)
Q Consensus 1470 s~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAG 1513 (2240)
.+|||+.|++. +..|..+.+.++..+
T Consensus 452 -----------------~~tiee~i~~~-~~~K~~l~~~~~~~~ 477 (500)
T 1z63_A 452 -----------------VGTLEEKIDQL-LAFKRSLFKDIISSG 477 (500)
T ss_dssp -----------------TTSHHHHTHHH-HTTCSSSSSSGGGST
T ss_pred -----------------CCCHHHHHHHH-HHHHHHHHHHHhhcC
Confidence 37899999984 577888777777664
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=501.84 Aligned_cols=431 Identities=18% Similarity=0.217 Sum_probs=319.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeE
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkV 1078 (2240)
.+|+|||.+++.|++.. .+.++||||+||+|||+++++++..++. .+..+++|||||.+|+.||..||.+|+ ++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~-~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v 227 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NLRF 227 (968)
T ss_dssp SCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHH-TSSCCCEEEECCTTTHHHHHHHHHHHS-CCCC
T ss_pred CCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCE
Confidence 48999999999999873 3567899999999999999999988875 566679999999999999999999998 6777
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh---hhccccCcceEecccccccCCchhH---HHHHhhcc--cc
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKDRESV---LARDLDRY--RC 1150 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrLKN~~SK---lskaLk~L--ks 1150 (2240)
.+|+|........ ........++|+|+||+.+.++. ..+....|++|||||||+++|..+. .++.+..+ .+
T Consensus 228 ~v~~~~~~~~~~~-~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 228 ALFDDERYAEAQH-DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp EECCHHHHHHHHH-TTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEccchhhhhhh-hcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 7777654332111 11122346799999999998763 4466779999999999999987654 47777777 67
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcc---------cCCCC---------------------
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQ---------KEGPT--------------------- 1200 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~---------~~g~~--------------------- 1200 (2240)
.++|+|||||++|++.|+|++++||.|..|++...|..++..... .....
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 789999999999999999999999999999999888866431110 00000
Q ss_pred ---CCCChhhHHHHHHHHHHHHHHHHh-----hHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccC
Q 000099 1201 ---HNADDDWLETEKKVIIIHRLHQIL-----EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVD 1272 (2240)
Q Consensus 1201 ---~~~e~d~l~~Ee~~lii~RLhklL-----rPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld 1272 (2240)
...+.... . . ....+..++ ..+++|+++..+ ..+|.+....+.+.+++....+|............
T Consensus 387 ~~~~~~~~~~~-~-~---~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 387 QAANSDSEDAQ-S-A---RQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp GGTCCCSSCST-T-T---HHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hcccchhhhhH-H-H---HHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 00000000 0 0 011122222 234555555565 47899999999999999999988754332111110
Q ss_pred chhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEec
Q 000099 1273 PEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFST 1352 (2240)
Q Consensus 1273 ~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ 1352 (2240)
... ...|.+|...+..+.. .....+..+.|+..|.++|.. ..+.++||||+
T Consensus 461 ~~~--------------------------~~~~l~pe~~~~~l~~-~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~ 511 (968)
T 3dmq_A 461 EDR--------------------------ARDMLYPERIYQEFEG-DNATWWNFDPRVEWLMGYLTS--HRSQKVLVICA 511 (968)
T ss_dssp GGG--------------------------THHHHCSGGGTTTTTS-SSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECS
T ss_pred HHH--------------------------HhhhcChHHHHHHhhh-hhhcccCccHHHHHHHHHHHh--CCCCCEEEEeC
Confidence 000 0011223222222111 111345567899999999987 57899999999
Q ss_pred chhHHHHHHHHHHh-cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhH
Q 000099 1353 MTKLLDILEEYLQW-RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNE 1431 (2240)
Q Consensus 1353 ~t~~LDiLed~L~~-rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d 1431 (2240)
++.+++.|..+|.. .|+.+..+||+++..+|..++++|+++++.+ .+||+|+++++|||++.|++||+||+||||..|
T Consensus 512 ~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~-~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~ 590 (968)
T 3dmq_A 512 KAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGA-QVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLL 590 (968)
T ss_dssp STHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSC-EEEECSCCTTCSSCCTTCCEEECSSCCSSHHHH
T ss_pred cHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcc-cEEEecchhhcCCCcccCcEEEEecCCCCHHHH
Confidence 99999999999995 5999999999999999999999999865334 467899999999999999999999999999999
Q ss_pred HHHhhhhhccCCcceEEEEEEeh---hHHHhhhhhhhhhhcc
Q 000099 1432 EQAVARAHRIGQKREVKVIYMEA---VVDKISSHQKEDELRS 1470 (2240)
Q Consensus 1432 ~QAiGRAhRIGQKKeV~VyrLvT---VEEkI~s~q~eKe~ls 1470 (2240)
.|++||++|+||++.|.||+++. ++++|.....++....
T Consensus 591 ~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~ 632 (968)
T 3dmq_A 591 EQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAF 632 (968)
T ss_dssp HHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCS
T ss_pred HHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCce
Confidence 99999999999999999998864 6666666655544433
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=423.26 Aligned_cols=427 Identities=18% Similarity=0.181 Sum_probs=276.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC--CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL--PSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~--Psl 1076 (2240)
+|+|||.+++.|++. + ++||+++||+|||+++++++..++. ...+++|||||. .|+.||..+|.+|+ +..
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchh
Confidence 799999999999886 3 8999999999999999999888765 345689999997 68999999999998 566
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCchh--HHHHHhh-ccccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES--VLARDLD-RYRCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~S--KlskaLk-~Lks~ 1151 (2240)
.+.+++|........ .....++|+|+||+.+..... .+...+|++|||||||++++... .+...+. .....
T Consensus 82 ~v~~~~g~~~~~~~~----~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~ 157 (494)
T 1wp9_A 82 KIVALTGEKSPEERS----KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (494)
T ss_dssp GEEEECSCSCHHHHH----HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred heEEeeCCcchhhhh----hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCC
Confidence 889998876543221 112467999999999987643 45567899999999999986432 2222222 23567
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhccccc---CChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHH
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVF---DNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFM 1228 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF---~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFm 1228 (2240)
++|+|||||. ++..+++.++.++....+ .....+...+..+........... .....+...+.+++
T Consensus 158 ~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 226 (494)
T 1wp9_A 158 LVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLP----------EIYKEVRKLLREML 226 (494)
T ss_dssp CEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCC----------HHHHHHHHHHHHHH
T ss_pred eEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCc----------HHHHHHHHHHHHHH
Confidence 8999999999 777888888877755432 221111111111110000000000 01345666777888
Q ss_pred HHhhhhhhccCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhc----ChhhHHHHHHHHHHHHHHHHH
Q 000099 1229 LRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQK----NPIYQAKVYKTLNNRCMELRK 1303 (2240)
Q Consensus 1229 LRRlKkDVekdLP~KvE-~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~----~~~~~ak~~~sL~nilmqLRK 1303 (2240)
.++++......+..... .+-...+......++..+................... ...........+...+..|..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (494)
T 1wp9_A 227 RDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYE 306 (494)
T ss_dssp HHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Confidence 88777654433322111 0101111122222222222111000000000000000 000000011223344444555
Q ss_pred HcCCCCCCCC--Cccccch----------hhHhhcccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhcCc
Q 000099 1304 TCNHPLLNYP--YFSDLSK----------DFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQL 1369 (2240)
Q Consensus 1304 ICNHP~L~~p--~~~~ls~----------d~LirsSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~rGi 1369 (2240)
.|.|+..... .+.+... ......+.|+..|..+|..+. ..++|+||||+++.+++.|.++|...|+
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~ 386 (494)
T 1wp9_A 307 EAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI 386 (494)
T ss_dssp HHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred hhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC
Confidence 4444211000 0000000 001146789999999999876 5789999999999999999999999999
Q ss_pred eEEeecC--------CCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhcc
Q 000099 1370 VYRRIDG--------TTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1370 ky~rLDG--------sTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRI 1441 (2240)
.+..++| +++.++|.+++++|++++.. ||++|+++++||||+.|++||+||++|||..++||+||+||.
T Consensus 387 ~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~ 463 (494)
T 1wp9_A 387 KAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH 463 (494)
T ss_dssp CEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC
T ss_pred CcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCC
Confidence 9999999 99999999999999986544 699999999999999999999999999999999999999999
Q ss_pred CCcceEEEEEEeh
Q 000099 1442 GQKREVKVIYMEA 1454 (2240)
Q Consensus 1442 GQKKeV~VyrLvT 1454 (2240)
|+ +.+|+|++
T Consensus 464 g~---g~~~~l~~ 473 (494)
T 1wp9_A 464 MP---GRVIILMA 473 (494)
T ss_dssp CC---SEEEEEEE
T ss_pred CC---ceEEEEEe
Confidence 98 56666654
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-38 Score=386.17 Aligned_cols=356 Identities=19% Similarity=0.218 Sum_probs=253.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Psl 1076 (2240)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||. .|+.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 45899999999998775 4569999999999999998887654 4689999998 7899999999995 56
Q ss_pred e-EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEE
Q 000099 1077 S-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLL 1155 (2240)
Q Consensus 1077 k-Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLL 1155 (2240)
. +.+++|.... ..+|+|+||+.+......+. .+|++|||||||++.+.... ..+..+.+.++|+
T Consensus 159 ~~v~~~~g~~~~------------~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~ 223 (472)
T 2fwr_A 159 EYVGEFSGRIKE------------LKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLG 223 (472)
T ss_dssp GGEEEBSSSCBC------------CCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEE
T ss_pred cceEEECCCcCC------------cCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEE
Confidence 6 7788776432 46899999999987765553 36999999999999986544 3555667889999
Q ss_pred eecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q 000099 1156 LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1235 (2240)
Q Consensus 1156 LTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkD 1235 (2240)
|||||.+++..+ .. |..++.|++.++...+
T Consensus 224 lSATp~~~~~~~----------------~~----------------------------------l~~~~~~~~~~~~~~~ 253 (472)
T 2fwr_A 224 LTATFEREDGRH----------------EI----------------------------------LKEVVGGKVFELFPDS 253 (472)
T ss_dssp EESCCCCTTSGG----------------GS----------------------------------HHHHTCCEEEECCHHH
T ss_pred EecCccCCCCHH----------------HH----------------------------------HHHHhCCeEeecCHHH
Confidence 999998654211 00 1122223333332333
Q ss_pred hc-cCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHc-CCCCCCCC
Q 000099 1236 VE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTC-NHPLLNYP 1313 (2240)
Q Consensus 1236 Ve-kdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKIC-NHP~L~~p 1313 (2240)
+. ..+++.....+.+.+++.++..|..+.......+...... ......+. .+-.++ ..+.....
T Consensus 254 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~------------~~~~~~~~~~~~~~~ 319 (472)
T 2fwr_A 254 LAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT--LRRAEDFN------------KIVMASGYDERAYEA 319 (472)
T ss_dssp HTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT--TTCCSSST------------TTTTTTCCSSSSSTT
T ss_pred HhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc--ccchhhHH------------HHHHHhccCHHHHHH
Confidence 32 2367777778889999999888864422111000000000 00000000 000000 00000000
Q ss_pred Cc-cccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhc
Q 000099 1314 YF-SDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNS 1392 (2240)
Q Consensus 1314 ~~-~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs 1392 (2240)
.. ...........+.|+..|..+|.. ..++++||||+++.+++.|.+.|. +..++|.++..+|.+++++|++
T Consensus 320 ~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 320 LRAWEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp THHHHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC
Confidence 00 000011123456799999999887 568999999999999999999984 5568999999999999999998
Q ss_pred CCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCc-ceEEEEEEeh
Q 000099 1393 HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQK-REVKVIYMEA 1454 (2240)
Q Consensus 1393 ~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQK-KeV~VyrLvT 1454 (2240)
++.+ +|++|+++++|||++.+++||+||++||+..+.|++||++|+|+. +.|.||+|++
T Consensus 393 g~~~---vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~ 452 (472)
T 2fwr_A 393 GRFR---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 452 (472)
T ss_dssp SSCS---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred CCCC---EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEe
Confidence 5554 689999999999999999999999999999999999999999998 8899999976
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=374.27 Aligned_cols=428 Identities=15% Similarity=0.134 Sum_probs=213.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~-SLL~QW~~Ef~Kw~P- 1074 (2240)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+ .|+.||..+|.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999975 6789999999999999999988877753321 5689999997 688999999999987
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--c-cccCcceEecccccccCCchhHHHHHhhcc--
Q 000099 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1148 (2240)
Q Consensus 1075 -slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrLKN~~SKlskaLk~L-- 1148 (2240)
++.+..++|........ ......++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 82 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 157 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 157 (556)
T ss_dssp GTCCEEECCCC-----CH---HHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhH---HHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHH
Confidence 78888888876433221 11223589999999999875432 3 445789999999999987654 22222222
Q ss_pred -------ccceEEEeecCCCCCCH-------HHHHHHHhhhcccc----cCChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000099 1149 -------RCQRRLLLTGTPLQNDL-------KELWSLLNLLLPEV----FDNRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (2240)
Q Consensus 1149 -------ks~~RLLLTGTPLQNnL-------~ELwSLLnFLlP~i----F~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~ 1210 (2240)
...++|+|||||..++. ..+..+...+.... ......+..++..|.................
T Consensus 158 ~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (556)
T 4a2p_A 158 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 237 (556)
T ss_dssp HHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHH
T ss_pred hhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHH
Confidence 23579999999988653 33334444444332 2234566666665543321111111111111
Q ss_pred HHHHHHHHHHHHHhhH----------------------HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccC
Q 000099 1211 EKKVIIIHRLHQILEP----------------------FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGT 1268 (2240)
Q Consensus 1211 Ee~~lii~RLhklLrP----------------------FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~ 1268 (2240)
........++..+.. ++....+......+|. ......+|..+.....
T Consensus 238 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 306 (556)
T 4a2p_A 238 -IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED----------KEEESRICRALFICTE 306 (556)
T ss_dssp -HHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---C----------HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccc----------cchhHHHHHHHHHHHH
Confidence 111122223333221 2222111111111111 1111222221111000
Q ss_pred cccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC------CCCCccccc--hhhHhhcccHHHHHHHHHHHH
Q 000099 1269 LRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL------NYPYFSDLS--KDFLVKSCGKLWILDRILIKL 1340 (2240)
Q Consensus 1269 l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L------~~p~~~~ls--~d~LirsSGKLelLdrIL~kL 1340 (2240)
. +........... ..........+...+..++....++.- +......+. .......++|+..|..+|.+.
T Consensus 307 ~-l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~ 384 (556)
T 4a2p_A 307 H-LRKYNDALIISE-DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 384 (556)
T ss_dssp H-HHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHH
Confidence 0 000000000000 000000011111111111110000000 000000000 000012478999999999887
Q ss_pred H--hcCCeEEEEecchhHHHHHHHHHHhc------------CceEEeecCCCCHHHHHHHHHHHhc-CCCCccEEEEecc
Q 000099 1341 Q--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSIR 1405 (2240)
Q Consensus 1341 ~--atGhKVLIFSQ~t~~LDiLed~L~~r------------Giky~rLDGsTs~eEReeaIk~FNs-~Ds~~fVfLLSTr 1405 (2240)
. ..++|+||||+++.+++.|.++|... |..+..+||+++.++|.+++++|+. ++.. |||+|+
T Consensus 385 ~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~ 461 (556)
T 4a2p_A 385 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIATS 461 (556)
T ss_dssp HHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC---EEEEEC
T ss_pred hcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE---EEEEcC
Confidence 6 66899999999999999999999875 5556667778999999999999997 4444 789999
Q ss_pred cccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1406 AGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
++++|||+++|++||+||+||||..|+||+|| +|. +++.+|.|++
T Consensus 462 ~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~ 506 (556)
T 4a2p_A 462 VADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 506 (556)
T ss_dssp -----------CEEEEETCCSCHHHHHHC------------CCEEEEES
T ss_pred chhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 99999999999999999999999999999999 665 5666777654
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=367.33 Aligned_cols=432 Identities=13% Similarity=0.152 Sum_probs=232.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEech-HHHHHHHHHHHHHCC-
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~-SLL~QW~~Ef~Kw~P- 1074 (2240)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+ .|+.||..+|.+|++
T Consensus 3 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999975 6789999999999999999988877753321 6789999998 688999999999986
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--c-cccCcceEecccccccCCchhHHHHHhhcc--
Q 000099 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1148 (2240)
Q Consensus 1075 -slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrLKN~~SKlskaLk~L-- 1148 (2240)
++.+..++|........ .......+|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 79 ~~~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~ 154 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSV---QHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLD 154 (555)
T ss_dssp TTCCEEEECTTTGGGSCH---HHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhH---HHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHH
Confidence 68888888876543221 11234589999999999876432 3 345789999999999987654 22222222
Q ss_pred --------ccceEEEeecCCCCCC-------HHHHHHHHhhhccccc----CChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000099 1149 --------RCQRRLLLTGTPLQND-------LKELWSLLNLLLPEVF----DNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (2240)
Q Consensus 1149 --------ks~~RLLLTGTPLQNn-------L~ELwSLLnFLlP~iF----~S~~sF~e~F~kPf~~~g~~~~~e~d~l~ 1209 (2240)
...++|+|||||..++ +..++.++.++....+ .....+..++..|................
T Consensus 155 ~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 155 HKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp HHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 2247999999999877 3444444455543322 23345555555443222111111111111
Q ss_pred HHHHHHHHHHHHHHhhHHHHH--hhhhhhccCCCCceE-----------EEEEeccCHHHHHHHHHHHHccCcccCchhH
Q 000099 1210 TEKKVIIIHRLHQILEPFMLR--RRVEDVEGSLPPKVS-----------IVLRCRMSAIQSAIYDWIKATGTLRVDPEDE 1276 (2240)
Q Consensus 1210 ~Ee~~lii~RLhklLrPFmLR--RlKkDVekdLP~KvE-----------~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e 1276 (2240)
......+.+++.++..++-. .+.......+..... .............+|..+...... +.....
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 312 (555)
T 3tbk_A 235 -CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSH-LRKYND 312 (555)
T ss_dssp -HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHH-HHHHHH
Confidence 11112223333333322110 000000000000000 000000000111111111000000 000000
Q ss_pred Hhhhh-cChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc-------------hhhHhhcccHHHHHHHHHHHHHh
Q 000099 1277 KRRVQ-KNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLS-------------KDFLVKSCGKLWILDRILIKLQR 1342 (2240)
Q Consensus 1277 ~~~l~-~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls-------------~d~LirsSGKLelLdrIL~kL~a 1342 (2240)
..... .... ......+...+..+ .+..+. .....+. .......++|+..|..+|..+..
T Consensus 313 ~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 385 (555)
T 3tbk_A 313 ALIISEDAQM--TDALNYLKAFFHDV----REAAFD-ETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYH 385 (555)
T ss_dssp HHHHHHHSCH--HHHHHHHHHHHHHH----CC------HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhH--HHHHHHHHHHHHHH----hhcccc-hHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhc
Confidence 00000 0000 00000000111111 000000 0000000 00011247899999999998865
Q ss_pred c--CCeEEEEecchhHHHHHHHHHHhcC------------ceEEeecCCCCHHHHHHHHHHHhc-CCCCccEEEEecccc
Q 000099 1343 T--GHRVLLFSTMTKLLDILEEYLQWRQ------------LVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSIRAA 1407 (2240)
Q Consensus 1343 t--GhKVLIFSQ~t~~LDiLed~L~~rG------------iky~rLDGsTs~eEReeaIk~FNs-~Ds~~fVfLLSTrAG 1407 (2240)
. ++|+||||+++.+++.|.++|...+ ..+..+||+++.++|.+++++|++ ++.. |||+|+++
T Consensus 386 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~~ 462 (555)
T 3tbk_A 386 LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN---ILIATSVA 462 (555)
T ss_dssp HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS---EEEECCCT
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee---EEEEcchh
Confidence 4 4999999999999999999999764 345556669999999999999997 4444 68899999
Q ss_pred cccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1408 GRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1408 GeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
++||||+.|++||+||+||||..|+||+|| |+.+.+.+|.|++
T Consensus 463 ~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~ 505 (555)
T 3tbk_A 463 DEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTS 505 (555)
T ss_dssp TCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEES
T ss_pred hcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEc
Confidence 999999999999999999999999999999 4457777887765
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=390.89 Aligned_cols=429 Identities=15% Similarity=0.139 Sum_probs=220.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechH-HHHHHHHHHHHHCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~S-LL~QW~~Ef~Kw~P 1074 (2240)
..+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||+. |+.||..+|.+|++
T Consensus 246 ~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 35899999999999875 6789999999999999999988887754321 67899999965 88999999999987
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hc-cccCcceEecccccccCCchhHHHHHhhcc-
Q 000099 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KL-SKVDWKYIIIDEAQRMKDRESVLARDLDRY- 1148 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L-~kikWd~VIIDEAHrLKN~~SKlskaLk~L- 1148 (2240)
++.+.+++|........ ......++|+|+||+.+..... .+ ....|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~ 397 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (797)
T ss_dssp GGTCCEEEECCC-----CH---HHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhH---HHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 78999999877443221 1223578999999999987543 22 344689999999999987554 22222222
Q ss_pred --------ccceEEEeecCCCCCCH----------HHHHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000099 1149 --------RCQRRLLLTGTPLQNDL----------KELWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (2240)
Q Consensus 1149 --------ks~~RLLLTGTPLQNnL----------~ELwSLLnFL-lP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~ 1209 (2240)
...++|+|||||.+++. .+||..|++- ..........+..++..|...............
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 476 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF- 476 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHH-
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHH-
Confidence 22579999999987553 3344444321 112223345667777665433211111111111
Q ss_pred HHHHHHHHHHHHHHhhHHH----------------------HHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHcc
Q 000099 1210 TEKKVIIIHRLHQILEPFM----------------------LRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 1267 (2240)
Q Consensus 1210 ~Ee~~lii~RLhklLrPFm----------------------LRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~ 1267 (2240)
......+...++.+++.++ ....+......++.. .....+|..+....
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICT 546 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSH----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhccccc----------chhhHHHHHHHHHH
Confidence 1111122334444443322 111111111111111 11111121111000
Q ss_pred CcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC------CCCCCccccc--hhhHhhcccHHHHHHHHHHH
Q 000099 1268 TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL------LNYPYFSDLS--KDFLVKSCGKLWILDRILIK 1339 (2240)
Q Consensus 1268 ~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~------L~~p~~~~ls--~d~LirsSGKLelLdrIL~k 1339 (2240)
.. +.......... ...........+...+..++.....+. .+......+. .......++|+..|..+|.+
T Consensus 547 ~~-l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~ 624 (797)
T 4a2q_A 547 EH-LRKYNDALIIS-EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 624 (797)
T ss_dssp HH-HHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHhhh-ccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Confidence 00 00000000000 000000001111111111111000000 0000000000 00001247899999999988
Q ss_pred HH--hcCCeEEEEecchhHHHHHHHHHHhc------------CceEEeecCCCCHHHHHHHHHHHhc-CCCCccEEEEec
Q 000099 1340 LQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFNS-HDSDCFIFLLSI 1404 (2240)
Q Consensus 1340 L~--atGhKVLIFSQ~t~~LDiLed~L~~r------------Giky~rLDGsTs~eEReeaIk~FNs-~Ds~~fVfLLST 1404 (2240)
.. ..++|+||||+++.+++.|.++|... |..+..+||+++.++|..++++|++ +... |||+|
T Consensus 625 ~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vLVaT 701 (797)
T 4a2q_A 625 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIAT 701 (797)
T ss_dssp HHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS---EEEEE
T ss_pred HhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce---EEEEc
Confidence 64 56799999999999999999999863 6667778899999999999999997 5444 78999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+++++||||+.|++||+||+||||..|+||+|| +|. +++.+|.|++
T Consensus 702 ~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~ 747 (797)
T 4a2q_A 702 SVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 747 (797)
T ss_dssp CC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEEC
T ss_pred CchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 999999999999999999999999999999999 665 6666777754
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=357.42 Aligned_cols=236 Identities=25% Similarity=0.352 Sum_probs=174.8
Q ss_pred HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcC
Q 000099 1227 FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCN 1306 (2240)
Q Consensus 1227 FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICN 1306 (2240)
--+||+|++|..+||++.+.+++|+||+.|+.+|+.+.......+. ... .......+.+.++.||++|+
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~---------~~~--~~~~~~~~l~~l~~Lrq~~~ 80 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID---------SVT--GIKRKGMILSTLLKLKQIVD 80 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT---------TCC--HHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHH---------hcc--ccchHHHHHHHHHHHHHHcC
Confidence 3589999999999999999999999999999999988654211111 000 01123457788999999999
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-CceEEeecCCCCHHHHHH
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRES 1385 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-Giky~rLDGsTs~eERee 1385 (2240)
||+++... ..++..++|+..|.++|..+...++|+||||+++.++++|+++|... |+.+.+++|+++.++|.+
T Consensus 81 hP~l~~~~------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~ 154 (271)
T 1z5z_A 81 HPALLKGG------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDD 154 (271)
T ss_dssp CTHHHHCS------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHH
T ss_pred CHHHhcCC------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHH
Confidence 99986421 12456789999999999999989999999999999999999999985 999999999999999999
Q ss_pred HHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhh
Q 000099 1386 AIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKE 1465 (2240)
Q Consensus 1386 aIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~e 1465 (2240)
++++|+.+ ..+.|||+||++||+||||+.|++||+||+||||..++||+||+||+||+++|.||+|++
T Consensus 155 ~i~~F~~~-~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~----------- 222 (271)
T 1z5z_A 155 IISKFQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS----------- 222 (271)
T ss_dssp HHHHHHHC-TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEE-----------
T ss_pred HHHHhcCC-CCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEee-----------
Confidence 99999974 346689999999999999999999999999999999999999999999999999999976
Q ss_pred hhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000099 1466 DELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (2240)
Q Consensus 1466 Ke~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAG 1513 (2240)
.+|||+.|++. +..|..+.+.+++++
T Consensus 223 ---------------------~~TiEe~i~~~-~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 223 ---------------------VGTLEEKIDQL-LAFKRSLFKDIISSG 248 (271)
T ss_dssp ---------------------TTSHHHHHHHH-HHHCHHHHTTGGGGT
T ss_pred ---------------------CCCHHHHHHHH-HHHHHHHHHHHHccC
Confidence 37999999984 578999999888765
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=391.68 Aligned_cols=415 Identities=16% Similarity=0.168 Sum_probs=221.0
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CCCCeEEEechH-HHHHHHHHHHHHCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--~~GP~LIVVP~S-LL~QW~~Ef~Kw~P 1074 (2240)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..++.... ..+++|||||+. |+.||..+|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 35899999999999975 678999999999999999888876654322 157899999965 89999999999987
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--c-cccCcceEecccccccCCchhHHHHHhhcc-
Q 000099 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARDLDRY- 1148 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrLKN~~SKlskaLk~L- 1148 (2240)
++.+.+++|....+... ......++|+|+||+.+...... + ....|++|||||||++.+... ....+..+
T Consensus 322 ~~~~~v~~~~G~~~~~~~~---~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~ 397 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSV---EKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (936)
T ss_dssp TTTCCEEEECCC-----CC---HHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHH---HHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 78899998876443221 11234589999999999876432 2 334689999999999988654 33333222
Q ss_pred --------ccceEEEeecCCCCCCHHH----------HHHHHhhh-cccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000099 1149 --------RCQRRLLLTGTPLQNDLKE----------LWSLLNLL-LPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (2240)
Q Consensus 1149 --------ks~~RLLLTGTPLQNnL~E----------LwSLLnFL-lP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~ 1209 (2240)
...++|+|||||.+++..+ ||.+|+.- ..........+..++..|................
T Consensus 398 ~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~ 477 (936)
T 4a2w_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (936)
T ss_dssp HHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHH
T ss_pred HHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHH
Confidence 2257999999998865433 33333321 1112223456666666554332111111111111
Q ss_pred HHHHHHHHHHHHHHhhH----------------------HHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHcc
Q 000099 1210 TEKKVIIIHRLHQILEP----------------------FMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 1267 (2240)
Q Consensus 1210 ~Ee~~lii~RLhklLrP----------------------FmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~ 1267 (2240)
.....+...++.++.. ++....+......+|... ....+|..+....
T Consensus 478 -~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~----------~~~~~~~~l~~~~ 546 (936)
T 4a2w_A 478 -AIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKE----------EESRICRALFICT 546 (936)
T ss_dssp -HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHH----------HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccc----------hhhHHHHHHHHHH
Confidence 1111122233333222 222222222222222211 1111111110000
Q ss_pred CcccCchhHHhhh--hcC--------------------hhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhh
Q 000099 1268 TLRVDPEDEKRRV--QKN--------------------PIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVK 1325 (2240)
Q Consensus 1268 ~l~ld~~~e~~~l--~~~--------------------~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~Lir 1325 (2240)
.. +........+ ... ..........+...+..|...+..+. .
T Consensus 547 ~~-l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~---------------~ 610 (936)
T 4a2w_A 547 EH-LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDET---------------N 610 (936)
T ss_dssp HH-HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTT---------------C
T ss_pred HH-HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccC---------------C
Confidence 00 0000000000 000 00000011111222223333332221 2
Q ss_pred cccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhc------------CceEEeecCCCCHHHHHHHHHHHh
Q 000099 1326 SCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR------------QLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~r------------Giky~rLDGsTs~eEReeaIk~FN 1391 (2240)
.++|+..|..+|.+.. ..++|+||||+++.+++.|.++|... |..+..+||+++..+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 4789999999998865 56799999999999999999999976 556667788899999999999999
Q ss_pred c-CCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1392 S-HDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1392 s-~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
. +..+ |||+|+++++||||+.|++||+||+|||+..|+||+|| +|. +.+.||.|++
T Consensus 691 ~~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~---~~g~vi~Li~ 747 (936)
T 4a2w_A 691 TSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTS 747 (936)
T ss_dssp ---CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEES
T ss_pred ccCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCCEEEEEEe
Confidence 7 4444 79999999999999999999999999999999999999 555 5666676654
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=362.76 Aligned_cols=420 Identities=17% Similarity=0.186 Sum_probs=221.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--CCCCeEEEech-HHHHHHHHHHHHHCC-
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--NYGPHLIIVPN-AVLVNWKSELHKWLP- 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--~~GP~LIVVP~-SLL~QW~~Ef~Kw~P- 1074 (2240)
.+|+|||.+++.|++. +.++|++++||+|||++++.++...+.... ..+++|||||+ .|+.||..+|.+|++
T Consensus 12 ~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 4899999999999986 778999999999999999988887665432 22789999997 689999999999997
Q ss_pred -CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--c-cccCcceEecccccccCCchhHHHHH---hhc
Q 000099 1075 -SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--L-SKVDWKYIIIDEAQRMKDRESVLARD---LDR 1147 (2240)
Q Consensus 1075 -slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L-~kikWd~VIIDEAHrLKN~~SKlska---Lk~ 1147 (2240)
++.+..++|+...+... .......+|+|+||+.+.+.... + ....|++|||||||++.+...-.... +..
T Consensus 88 ~~~~v~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~ 164 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPV---EQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQ 164 (696)
T ss_dssp TTCCEEEECSSSCSSSCH---HHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHH
T ss_pred CCceEEEEeCCccccccH---HHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHHHH
Confidence 68888888876433221 11224689999999999876432 3 44578999999999998765322221 111
Q ss_pred -c-----ccceEEEeecCCCCCC-------HHHHHHHHhhhcccccC----ChHHHHhhhcCCcccCCCCCCCChhhHHH
Q 000099 1148 -Y-----RCQRRLLLTGTPLQND-------LKELWSLLNLLLPEVFD----NRKAFHDWFSQPFQKEGPTHNADDDWLET 1210 (2240)
Q Consensus 1148 -L-----ks~~RLLLTGTPLQNn-------L~ELwSLLnFLlP~iF~----S~~sF~e~F~kPf~~~g~~~~~e~d~l~~ 1210 (2240)
+ ...++|+|||||..++ +.+|+.++..+....+. .......++..|..............+..
T Consensus 165 ~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~ 244 (696)
T 2ykg_A 165 KLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKY 244 (696)
T ss_dssp HHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHH
T ss_pred hhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHH
Confidence 1 3467999999998543 45566666555544332 22334444444421110000000000100
Q ss_pred HHHHHHHHHHHHH-----------------------hhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHcc
Q 000099 1211 EKKVIIIHRLHQI-----------------------LEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATG 1267 (2240)
Q Consensus 1211 Ee~~lii~RLhkl-----------------------LrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~ 1267 (2240)
.. ..+...+..+ +..+++++.+......+|.+.+.. ..-..++.....-.
T Consensus 245 ~~-~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~l~ 317 (696)
T 2ykg_A 245 II-AQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEES------RICKALFLYTSHLR 317 (696)
T ss_dssp HH-HHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHH------HHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhh------HHHHHHHHHHHHHH
Confidence 00 0000111111 112222222222222223221100 00011111000000
Q ss_pred CcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhH-----------------hhcccHH
Q 000099 1268 TLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFL-----------------VKSCGKL 1330 (2240)
Q Consensus 1268 ~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~L-----------------irsSGKL 1330 (2240)
.......+... .........+...+..++... ...+....+ ...+.|+
T Consensus 318 -----~~~~~~~i~~~-~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~ 382 (696)
T 2ykg_A 318 -----KYNDALIISEH-ARMKDALDYLKDFFSNVRAAG---------FDEIEQDLTQRFEEKLQELESVSRDPSNENPKL 382 (696)
T ss_dssp -----HHHHHHHHHHH-SCHHHHHHHHHHHHHHHHTTC---------CCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHH
T ss_pred -----HHhHHHhccch-hhHHHHHHHHHHHHHHHhhcc---------cchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHH
Confidence 00000000000 000001111111111111000 000000000 0246799
Q ss_pred HHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhcC----ceEEeecC--------CCCHHHHHHHHHHHhc-CCC
Q 000099 1331 WILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQ----LVYRRIDG--------TTSLEDRESAIVDFNS-HDS 1395 (2240)
Q Consensus 1331 elLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~rG----iky~rLDG--------sTs~eEReeaIk~FNs-~Ds 1395 (2240)
..|..+|.... ..++++||||+++.+++.|.++|...+ +.+..++| +++.++|.+++++|+. ++.
T Consensus 383 ~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~ 462 (696)
T 2ykg_A 383 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH 462 (696)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CC
T ss_pred HHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCc
Confidence 99999998874 357899999999999999999999998 89999955 9999999999999996 554
Q ss_pred CccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1396 ~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
. +||+|+++++|||+++|++||+||+|||+..|+||+|| +|. +...++.|++
T Consensus 463 ~---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~ 514 (696)
T 2ykg_A 463 N---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTS 514 (696)
T ss_dssp S---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEES
T ss_pred c---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEec
Confidence 4 58999999999999999999999999999999999999 886 4455566644
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=346.66 Aligned_cols=337 Identities=13% Similarity=0.138 Sum_probs=244.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHH--CCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKW--LPSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw--~Psl 1076 (2240)
+|+|||.+++.+++. +.++||+++||+|||++++.++..++.. ..+++|||||. .|+.||.++|.+| ++.+
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~ 186 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLEN--YEGKILIIVPTTALTTQMADDFVDYRLFSHA 186 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHH--CSSEEEEEESSHHHHHHHHHHHHHTTSSCGG
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhC--CCCeEEEEECcHHHHHHHHHHHHHhhcCCcc
Confidence 899999999999886 4679999999999999998887776652 23599999997 5889999999999 5667
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc-ccceEEE
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLL 1155 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks~~RLL 1155 (2240)
.+..++|......+ .....+|+|+||+.+.+.... ...+|++|||||||++.+. .....+..+ .+.++|+
T Consensus 187 ~v~~~~~~~~~~~~------~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~ 257 (510)
T 2oca_A 187 MIKKIGGGASKDDK------YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFG 257 (510)
T ss_dssp GEEECGGGCCTTGG------GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEE
T ss_pred ceEEEecCCccccc------cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEEE
Confidence 78877776543322 245789999999998776332 2347899999999999863 344556666 5678999
Q ss_pred eecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhh
Q 000099 1156 LTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVED 1235 (2240)
Q Consensus 1156 LTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkD 1235 (2240)
||||| .+...++|.+..++.+.++.. + .. + ...
T Consensus 258 lSATp-~~~~~~~~~~~~~~~~~~~~~----------~-----~~---~---~~~------------------------- 290 (510)
T 2oca_A 258 LSGSL-RDGKANIMQYVGMFGEIFKPV----------T-----TS---K---LME------------------------- 290 (510)
T ss_dssp EESCG-GGCSSCHHHHHHHHCSEECCC----------C-----CC-----------------------------------
T ss_pred EEeCC-CCCcccHHHhHHhhCCeEEee----------C-----HH---H---Hhh-------------------------
Confidence 99999 555566777776665543211 0 00 0 000
Q ss_pred hccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Q 000099 1236 VEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF 1315 (2240)
Q Consensus 1236 VekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~ 1315 (2240)
...+++.....+.+.++........ + ..+ .. .+..+
T Consensus 291 -~~~l~~~~~~~~~~~~~~~~~~~~~-----~----------------~~~-----~~------~~~~~----------- 326 (510)
T 2oca_A 291 -DGQVTELKINSIFLRYPDEFTTKLK-----G----------------KTY-----QE------EIKII----------- 326 (510)
T ss_dssp ------CCEEEEEEEECCHHHHHHHT-----T----------------CCH-----HH------HHHHH-----------
T ss_pred -CCcCCCceEEEEeecCChHHhcccc-----c----------------cch-----HH------HHHHH-----------
Confidence 0135556666666666654331100 0 000 00 01111
Q ss_pred cccchhhHhhcccHHHHHHHHHHHHHhc-CCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCC
Q 000099 1316 SDLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHD 1394 (2240)
Q Consensus 1316 ~~ls~d~LirsSGKLelLdrIL~kL~at-GhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~D 1394 (2240)
.....|...+..++..+... +.++||||. +..++.|.++|...+..+..+||.++.++|.++++.|++++
T Consensus 327 --------~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~ 397 (510)
T 2oca_A 327 --------TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK 397 (510)
T ss_dssp --------HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC
T ss_pred --------hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC
Confidence 11223555566666665444 556777777 88888899999999889999999999999999999999755
Q ss_pred CCccEEEEec-ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc-eEEEEEEeh
Q 000099 1395 SDCFIFLLSI-RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1454 (2240)
Q Consensus 1395 s~~fVfLLST-rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK-eV~VyrLvT 1454 (2240)
.. +||+| .++++|||++.+++||++|++||+..+.|++||++|.|+.+ .|.||.++.
T Consensus 398 ~~---vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 398 GI---IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp SC---EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred CC---EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeec
Confidence 44 67777 99999999999999999999999999999999999999987 688888754
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=358.68 Aligned_cols=395 Identities=17% Similarity=0.226 Sum_probs=234.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechH-HHHHH-HHHHHHHC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNA-VLVNW-KSELHKWL 1073 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k---g~~GP~LIVVP~S-LL~QW-~~Ef~Kw~ 1073 (2240)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++... +..+++|||||+. |+.|| ..+|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 4799999999999986 67899999999999999999887766432 3347899999975 88999 99999999
Q ss_pred CC-CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--------hhccccCcceEecccccccCCchh---HH
Q 000099 1074 PS-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--------SKLSKVDWKYIIIDEAQRMKDRES---VL 1141 (2240)
Q Consensus 1074 Ps-lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--------s~L~kikWd~VIIDEAHrLKN~~S---Kl 1141 (2240)
+. +.+..++|........ .......+|+|+|++.+.... ..+....|++|||||||++.+... ..
T Consensus 82 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~ 158 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISF---PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIM 158 (699)
T ss_dssp TTTSCEEEEC----CCCCH---HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHH
T ss_pred CcCceEEEEeCCcchhhHH---HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHH
Confidence 87 8999998876543221 122357899999999998643 234556899999999999854221 11
Q ss_pred HHHhhc-c-------------ccceEEEeecCCCCCC-------HHHHHHHHhhhcc-ccc---CChHHHHhhhcCCccc
Q 000099 1142 ARDLDR-Y-------------RCQRRLLLTGTPLQND-------LKELWSLLNLLLP-EVF---DNRKAFHDWFSQPFQK 1196 (2240)
Q Consensus 1142 skaLk~-L-------------ks~~RLLLTGTPLQNn-------L~ELwSLLnFLlP-~iF---~S~~sF~e~F~kPf~~ 1196 (2240)
...+.. + ...++|+|||||..++ ..++..++..+.+ .+. .....+..++..|...
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~ 238 (699)
T 4gl2_A 159 RHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKK 238 (699)
T ss_dssp HHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEE
T ss_pred HHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceE
Confidence 112211 1 4467999999999863 3344445555555 222 1224455555544322
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHH-H---HHc----cC
Q 000099 1197 EGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDW-I---KAT----GT 1268 (2240)
Q Consensus 1197 ~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~-L---~~~----~~ 1268 (2240)
............ ...+..+...+..++ ++. |.. .+.. ..|.. + ... ..
T Consensus 239 ~~~~~~~~~~~~-----~~~l~~l~~~i~~~~------~~~---~~~-------~~g~---~~~~~~~~~~~~~~~~~~~ 294 (699)
T 4gl2_A 239 FAIADATREDPF-----KEKLLEIMTRIQTYC------QMS---PMS-------DFGT---QPYEQWAIQMEKKAAKEGN 294 (699)
T ss_dssp EEEEC-----CH-----HHHHHHHHHHHHHHH------TCC---CCS-------CSSS---HHHHHHHHHHHHHHHHHTC
T ss_pred EEEcccccCChH-----HHHHHHHHHHHHHHh------ccC---cch-------hccc---hHHHHHHHHHHHHHHHhhh
Confidence 111000000000 011112222221111 000 100 0000 00110 0 000 00
Q ss_pred cccCchhHHhhhh------cChhhHHHHHHHHHHHHH------------------------------------HHHHHcC
Q 000099 1269 LRVDPEDEKRRVQ------KNPIYQAKVYKTLNNRCM------------------------------------ELRKTCN 1306 (2240)
Q Consensus 1269 l~ld~~~e~~~l~------~~~~~~ak~~~sL~nilm------------------------------------qLRKICN 1306 (2240)
............. .........+..+...+. .|..++.
T Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 374 (699)
T 4gl2_A 295 RKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAE 374 (699)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 0000000000000 000000000011111111 1111211
Q ss_pred CCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhc---CCeEEEEecchhHHHHHHHHHHhc------CceEEeecCC
Q 000099 1307 HPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT---GHRVLLFSTMTKLLDILEEYLQWR------QLVYRRIDGT 1377 (2240)
Q Consensus 1307 HP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~at---GhKVLIFSQ~t~~LDiLed~L~~r------Giky~rLDGs 1377 (2240)
.+. ..+.|+..|..+|...... +.++||||+++.+++.|.++|... |+.+..+||.
T Consensus 375 ~~~---------------~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~ 439 (699)
T 4gl2_A 375 NPE---------------YENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGA 439 (699)
T ss_dssp CCC-------------------CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCS
T ss_pred cCC---------------CCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECC
Confidence 110 1345666777777765443 789999999999999999999987 9999999999
Q ss_pred --------CCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccC
Q 000099 1378 --------TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1378 --------Ts~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIG 1442 (2240)
++.++|.+++++|++++.+ |||+|+++++|||++++++||+||+|||+..|+||+||++|-|
T Consensus 440 ~~~~~~~~~~~~eR~~~~~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 440 GHSSEFKPMTQNEQKEVISKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp CCCTTCCCCCHHHHHHHHHHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred CCccCCCCCCHHHHHHHHHHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 9999999999999976555 6899999999999999999999999999999999999986655
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-31 Score=312.99 Aligned_cols=316 Identities=16% Similarity=0.170 Sum_probs=225.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL---PS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~---Ps 1075 (2240)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||. .|+.||..++.+|. ++
T Consensus 30 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 30 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 699999999998876 67899999999999999877776554333344589999997 57889999999986 47
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchh---HHHHHhhcc-c
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES---VLARDLDRY-R 1149 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~S---KlskaLk~L-k 1149 (2240)
+.+.++.|+....... ........+|+|+||+.+.... ..+....|++|||||||++.+... .+...+..+ .
T Consensus 106 ~~~~~~~g~~~~~~~~--~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~ 183 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183 (391)
T ss_dssp CCEEEECTTSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS
T ss_pred eEEEEEeCCCCHHHHH--HHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC
Confidence 8888888875543221 1233456799999999997653 223445789999999999976322 122222233 2
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmL 1229 (2240)
...+++|||||-.. ..++. ..++..|.......
T Consensus 184 ~~~~i~~SAT~~~~-~~~~~-----------------~~~~~~~~~~~~~~----------------------------- 216 (391)
T 1xti_A 184 EKQVMMFSATLSKE-IRPVC-----------------RKFMQDPMEIFVDD----------------------------- 216 (391)
T ss_dssp SSEEEEEESSCCST-HHHHH-----------------HHHCSSCEEEECCC-----------------------------
T ss_pred CceEEEEEeeCCHH-HHHHH-----------------HHHcCCCeEEEecC-----------------------------
Confidence 45689999997432 11111 11111111000000
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
.....+.......+.+
T Consensus 217 -----~~~~~~~~~~~~~~~~----------------------------------------------------------- 232 (391)
T 1xti_A 217 -----ETKLTLHGLQQYYVKL----------------------------------------------------------- 232 (391)
T ss_dssp -----CCCCCCTTCEEEEEEC-----------------------------------------------------------
T ss_pred -----ccccCcccceEEEEEc-----------------------------------------------------------
Confidence 0000000001111111
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHH
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~ 1389 (2240)
....|...|..++... .++++||||+....++.+.++|...|+.+..+||+++.++|..+++.
T Consensus 233 ---------------~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 295 (391)
T 1xti_A 233 ---------------KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQ 295 (391)
T ss_dssp ---------------CGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH
T ss_pred ---------------CchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Confidence 1122444455555542 57899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
|++++.. +|++|+++++|||++.+++||+||++||+..|+|++||++|.|++..|.++..
T Consensus 296 f~~~~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 355 (391)
T 1xti_A 296 FKDFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVS 355 (391)
T ss_dssp HHTTCCS---EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEEC
T ss_pred HhcCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEc
Confidence 9976554 79999999999999999999999999999999999999999998888777654
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=346.31 Aligned_cols=354 Identities=15% Similarity=0.150 Sum_probs=218.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCC-CCeEEEcCCCchHHHHHHHHHHHHHHHh------CCCCCeEEEec-hHHHHHHH-HH
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNK-LNGILADEMGLGKTVQVMALIAYLMEFK------GNYGPHLIIVP-NAVLVNWK-SE 1068 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~-lnGILADEMGLGKTIQAIALIa~Lle~k------g~~GP~LIVVP-~SLL~QW~-~E 1068 (2240)
+.+|+|||.+++.+++..+.++ .++||+++||+|||++++.++..++... ...+++||||| ..|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4589999999999999766554 5589999999999999999888887632 15678999999 55789999 78
Q ss_pred HHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh------hhccccCcceEecccccccCCch-hHH
Q 000099 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR------SKLSKVDWKYIIIDEAQRMKDRE-SVL 1141 (2240)
Q Consensus 1069 f~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~------s~L~kikWd~VIIDEAHrLKN~~-SKl 1141 (2240)
|..|.+.+. .+.+. ......+|+|+||+.+.... ..+....|++|||||||++.+.. +.+
T Consensus 256 ~~~~~~~~~--~~~~~-----------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 256 FTPFGDARH--KIEGG-----------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp CTTTCSSEE--ECCC-------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------C
T ss_pred HHhcchhhh--hhhcc-----------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHH
Confidence 887754322 22221 12346799999999987652 33445579999999999998653 344
Q ss_pred HHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHH
Q 000099 1142 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLH 1221 (2240)
Q Consensus 1142 skaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLh 1221 (2240)
...+..+...++|+|||||..+...+++.++. .++.... +.
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~------------------~~~~~~~---------------------~~ 363 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNRDTYRYFG------------------NPIYTYS---------------------LR 363 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC------------------SCSEEEC---------------------HH
T ss_pred HHHHHhCCcceEEEeccccccccchhHHHHcC------------------CceEecC---------------------HH
Confidence 45556677788999999999888776665442 1111110 00
Q ss_pred HHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1222 QILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1222 klLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
..+. ...+++.....+.+....................+ ..
T Consensus 364 ~~i~-----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------ 404 (590)
T 3h1t_A 364 QGID-----------DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI----------PD------------------ 404 (590)
T ss_dssp HHHH-----------HTSSCCEEEEEEEETTCC-----------------------------------------------
T ss_pred HHhh-----------CCccCCcEEEEeeeeeecccccccccccccccccc----------cc------------------
Confidence 0000 01123333333333222111100000000000000 00
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH---hcCCeEEEEecchhHHHHHHHHHHhcCce--------
Q 000099 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ---RTGHRVLLFSTMTKLLDILEEYLQWRQLV-------- 1370 (2240)
Q Consensus 1302 RKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~---atGhKVLIFSQ~t~~LDiLed~L~~rGik-------- 1370 (2240)
..+........+....+...+...|..+. ..+.|+||||+.+.+++.|.+.|...+..
T Consensus 405 -----------~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 473 (590)
T 3h1t_A 405 -----------GEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDY 473 (590)
T ss_dssp ---------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTS
T ss_pred -----------ccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCe
Confidence 00000000011111222233322232221 34689999999999999999999876543
Q ss_pred EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCC---cceE
Q 000099 1371 YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQ---KREV 1447 (2240)
Q Consensus 1371 y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQ---KKeV 1447 (2240)
+..++|.++ ++|.+++++|++++.++.+||+||+++++|||++.+++||+|+++||+..|+|++||++|+|+ +..+
T Consensus 474 ~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~ 552 (590)
T 3h1t_A 474 VARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWF 552 (590)
T ss_dssp EEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCE
T ss_pred EEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEE
Confidence 678999986 479999999998888888999999999999999999999999999999999999999999995 5678
Q ss_pred EEEEEeh
Q 000099 1448 KVIYMEA 1454 (2240)
Q Consensus 1448 ~VyrLvT 1454 (2240)
.||.++.
T Consensus 553 ~I~D~~g 559 (590)
T 3h1t_A 553 NIIDYTG 559 (590)
T ss_dssp EEEECSS
T ss_pred EEEecCC
Confidence 8998873
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-30 Score=312.12 Aligned_cols=313 Identities=17% Similarity=0.183 Sum_probs=222.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.|+|||.+++.+++. +.++|++.+||+|||++++..+...+.......++|||||.. |+.||.+++.++++ ++
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 699999999999986 677999999999999988777766543333455899999975 77899999999986 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCchh-HHHH-Hhhcc-ccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRES-VLAR-DLDRY-RCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~S-Klsk-aLk~L-ks~ 1151 (2240)
.+..+.|........ .......+|+|+|++.+..... .+...+|++|||||||++.+... .... .+..+ ...
T Consensus 119 ~~~~~~g~~~~~~~~---~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~ 195 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDI---LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 195 (400)
T ss_dssp CEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSC
T ss_pred eEEEEeCCcchHHHH---HHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCc
Confidence 777777776544332 1224578999999999865432 23345789999999999876432 2222 22233 245
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
..++||||+-. ++..+ +..++..|+.....
T Consensus 196 ~~i~lSAT~~~----~~~~~--------------~~~~~~~~~~~~~~-------------------------------- 225 (400)
T 1s2m_A 196 QSLLFSATFPL----TVKEF--------------MVKHLHKPYEINLM-------------------------------- 225 (400)
T ss_dssp EEEEEESCCCH----HHHHH--------------HHHHCSSCEEESCC--------------------------------
T ss_pred eEEEEEecCCH----HHHHH--------------HHHHcCCCeEEEec--------------------------------
Confidence 68999999621 11110 01111111100000
Q ss_pred hhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
.+. ..+........+
T Consensus 226 --~~~--~~~~~~~~~~~~------------------------------------------------------------- 240 (400)
T 1s2m_A 226 --EEL--TLKGITQYYAFV------------------------------------------------------------- 240 (400)
T ss_dssp --SSC--BCTTEEEEEEEC-------------------------------------------------------------
T ss_pred --ccc--ccCCceeEEEEe-------------------------------------------------------------
Confidence 000 000000001000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
....|+..|..++.. ..+.++||||+....++.+.++|...|+.+..+||.++.++|..+++.|+
T Consensus 241 -------------~~~~k~~~l~~~~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~ 305 (400)
T 1s2m_A 241 -------------EERQKLHCLNTLFSK--LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFR 305 (400)
T ss_dssp -------------CGGGHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred -------------chhhHHHHHHHHHhh--cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHh
Confidence 112345555555554 25679999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
++... +|++|+++++|||++++++||+||++||+..|+||+||++|.|++..|.+++-
T Consensus 306 ~g~~~---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~ 363 (400)
T 1s2m_A 306 QGKVR---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLIN 363 (400)
T ss_dssp TTSSS---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEEC
T ss_pred cCCCc---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEec
Confidence 75544 78999999999999999999999999999999999999999998877666543
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=310.03 Aligned_cols=315 Identities=18% Similarity=0.214 Sum_probs=225.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||+. |+.||.++|.+|.. .+
T Consensus 59 ~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 134 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 134 (410)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCe
Confidence 699999999999886 678999999999999998877766553334557899999976 78899999999875 45
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhcc-ccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY-RCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~L-ks~ 1151 (2240)
.+..+.|+........ ......+|+|+|++.+.... ..+....|++|||||||++.+.. ..+...+..+ ...
T Consensus 135 ~~~~~~g~~~~~~~~~---~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 211 (410)
T 2j0s_A 135 QCHACIGGTNVGEDIR---KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 211 (410)
T ss_dssp CEEEECTTSCHHHHHH---HHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC
T ss_pred EEEEEECCCCHHHHHH---HhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCc
Confidence 6677777654443321 22346799999999987653 23445579999999999987644 3334444444 345
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
..++|||||-. ++..++. .++..|.....
T Consensus 212 ~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~--------------------------------- 240 (410)
T 2j0s_A 212 QVVLISATLPH----EILEMTN--------------KFMTDPIRILV--------------------------------- 240 (410)
T ss_dssp EEEEEESCCCH----HHHTTGG--------------GTCSSCEEECC---------------------------------
T ss_pred eEEEEEcCCCH----HHHHHHH--------------HHcCCCEEEEe---------------------------------
Confidence 78999999721 1111111 01111110000
Q ss_pred hhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
......++......+.+.
T Consensus 241 --~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 258 (410)
T 2j0s_A 241 --KRDELTLEGIKQFFVAVE------------------------------------------------------------ 258 (410)
T ss_dssp --CGGGCSCTTEEEEEEEES------------------------------------------------------------
T ss_pred --cCccccCCCceEEEEEeC------------------------------------------------------------
Confidence 000000111111111111
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
....|+..|..++... ...++||||+....++.|.++|...|+.+..+||+++.++|..+++.|+
T Consensus 259 -------------~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~ 323 (410)
T 2j0s_A 259 -------------REEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFR 323 (410)
T ss_dssp -------------STTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred -------------cHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHH
Confidence 0011444455555443 3569999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
++... +|++|+++++|||++.+++||+||++|++..|+||+||++|.|++..+.++..
T Consensus 324 ~g~~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 381 (410)
T 2j0s_A 324 SGASR---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVK 381 (410)
T ss_dssp HTSSC---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEE
T ss_pred CCCCC---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEec
Confidence 86554 78999999999999999999999999999999999999999998877766544
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-31 Score=307.78 Aligned_cols=307 Identities=20% Similarity=0.260 Sum_probs=221.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
+|+|||.+++.+++. .+.++|++.+||+|||++++..+..++. .....++|||||.. ++.||.+++.+|++ .+
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 103 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNL 103 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhc-ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCc
Confidence 799999999998875 2367899999999999998877766553 23456899999975 77999999999975 45
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCch--hHHHHHhhcc-ccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY-RCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~~--SKlskaLk~L-ks~ 1151 (2240)
.+..+.|........ ......+|+|+||+.+...... +...+|++|||||||++.+.. ..+...+..+ ...
T Consensus 104 ~v~~~~~~~~~~~~~----~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 179 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQI----KALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 179 (367)
T ss_dssp CEEEECTTSCHHHHH----HHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred eEEEEECCcchHHHH----hhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCc
Confidence 677777765543322 1223689999999999765432 334578999999999997644 2333444444 345
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
+.++|||||... +..++. .++..+..
T Consensus 180 ~~i~~SAT~~~~----~~~~~~--------------~~~~~~~~------------------------------------ 205 (367)
T 1hv8_A 180 RILLFSATMPRE----ILNLAK--------------KYMGDYSF------------------------------------ 205 (367)
T ss_dssp EEEEECSSCCHH----HHHHHH--------------HHCCSEEE------------------------------------
T ss_pred eEEEEeeccCHH----HHHHHH--------------HHcCCCeE------------------------------------
Confidence 689999998321 111110 01100000
Q ss_pred hhhhhccCCCCce-EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1232 RVEDVEGSLPPKV-SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1232 lKkDVekdLP~Kv-E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
+....+... ...+.+
T Consensus 206 ----~~~~~~~~~~~~~~~~------------------------------------------------------------ 221 (367)
T 1hv8_A 206 ----IKAKINANIEQSYVEV------------------------------------------------------------ 221 (367)
T ss_dssp ----EECCSSSSSEEEEEEC------------------------------------------------------------
T ss_pred ----EEecCCCCceEEEEEe------------------------------------------------------------
Confidence 000000000 000000
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
....|+..|..++ ...+.++||||+....++.+.++|...|+.+..+||+++.++|..+++.|
T Consensus 222 --------------~~~~~~~~l~~~l---~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 284 (367)
T 1hv8_A 222 --------------NENERFEALCRLL---KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLF 284 (367)
T ss_dssp --------------CGGGHHHHHHHHH---CSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHH
T ss_pred --------------ChHHHHHHHHHHH---hcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHH
Confidence 0112333343333 35678999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+++... +|++|+++++|||++.+++||+||++||+..+.|++||++|.|++..|.+++.
T Consensus 285 ~~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~ 343 (367)
T 1hv8_A 285 KQKKIR---ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIIN 343 (367)
T ss_dssp HTTSSS---EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEEC
T ss_pred HcCCCe---EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEc
Confidence 975544 78999999999999999999999999999999999999999999888776653
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=312.04 Aligned_cols=317 Identities=19% Similarity=0.223 Sum_probs=213.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--s 1075 (2240)
..|++||.+++.+++. +.++|++.+||+|||++++..+...+......+.+|||||.. |+.||.+++.+++. .
T Consensus 61 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 3799999999998886 677999999999999998777776554344567899999976 78899999999864 4
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCch--hHHHHHhhccc-c
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-C 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lk-s 1150 (2240)
+.+..+.|......... .......+|+|+|++.+..... .+....|++|||||||++.+.. ..+...+..+. .
T Consensus 137 ~~~~~~~~~~~~~~~~~--~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 214 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQ--KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSN 214 (414)
T ss_dssp CCEEECCCCTTHHHHHH--HHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTT
T ss_pred ceEEEEECCcchHHHHH--HHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCC
Confidence 56666666655443321 2334678999999999876532 3445568999999999985432 44555555553 4
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.+.++|||||-. ++..++.. ++..+........
T Consensus 215 ~~~i~~SAT~~~----~~~~~~~~--------------~~~~~~~~~~~~~----------------------------- 247 (414)
T 3eiq_A 215 TQVVLLSATMPS----DVLEVTKK--------------FMRDPIRILVKKE----------------------------- 247 (414)
T ss_dssp CEEEEECSCCCH----HHHHHHTT--------------TCSSCEEECCCCC-----------------------------
T ss_pred CeEEEEEEecCH----HHHHHHHH--------------HcCCCEEEEecCC-----------------------------
Confidence 568999999821 11111110 0111100000000
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
. ..++...... .
T Consensus 248 ----~--~~~~~~~~~~--------------------------------------------------------------~ 259 (414)
T 3eiq_A 248 ----E--LTLEGIRQFY--------------------------------------------------------------I 259 (414)
T ss_dssp ----C--CCTTSCCEEE--------------------------------------------------------------E
T ss_pred ----c--cCCCCceEEE--------------------------------------------------------------E
Confidence 0 0000000000 0
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
. ......|+..|..++... .+.++||||+....++.+.+.|...++.+..+||.++.++|..+++.|
T Consensus 260 ~-----------~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f 326 (414)
T 3eiq_A 260 N-----------VEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREF 326 (414)
T ss_dssp E-----------CSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHH
T ss_pred E-----------eChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHH
Confidence 0 001123666666666543 467999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+++... +|++|+++++|||++.+++||+||++||+..|+||+||++|.|++..+.+++.
T Consensus 327 ~~g~~~---vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 385 (414)
T 3eiq_A 327 RSGSSR---VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT 385 (414)
T ss_dssp SCC------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEEC
T ss_pred HcCCCc---EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEc
Confidence 875544 69999999999999999999999999999999999999999998877766543
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=297.26 Aligned_cols=314 Identities=16% Similarity=0.166 Sum_probs=219.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--s 1075 (2240)
.+|+|||.+++.+++.. ++.++|++.+||+|||++++..+...+......+++|||||.. |+.||..++.++.. .
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 37999999999988751 2378899999999999998877766554344566899999976 78899999999874 4
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchh--HHH-HHhhccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRES--VLA-RDLDRYR- 1149 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~S--Kls-kaLk~Lk- 1149 (2240)
+.+..+.+..... ......+|+|+|++.+.... ..+...+|++|||||||++.+... ... ..+..+.
T Consensus 104 ~~~~~~~~~~~~~-------~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~ 176 (395)
T 3pey_A 104 ITSQLIVPDSFEK-------NKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176 (395)
T ss_dssp CCEEEESTTSSCT-------TSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCT
T ss_pred eeEEEEecCchhh-------hccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCC
Confidence 5555555543322 12346899999999987653 233445799999999999864221 222 2223332
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmL 1229 (2240)
....++|||||-. .+..++..+ +..+.....
T Consensus 177 ~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~------------------------------- 207 (395)
T 3pey_A 177 DTQLVLFSATFAD----AVRQYAKKI--------------VPNANTLEL------------------------------- 207 (395)
T ss_dssp TCEEEEEESCCCH----HHHHHHHHH--------------SCSCEEECC-------------------------------
T ss_pred CcEEEEEEecCCH----HHHHHHHHh--------------CCCCeEEEc-------------------------------
Confidence 3568999999721 111111111 000000000
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
.... ...+......+.+
T Consensus 208 --~~~~--~~~~~~~~~~~~~----------------------------------------------------------- 224 (395)
T 3pey_A 208 --QTNE--VNVDAIKQLYMDC----------------------------------------------------------- 224 (395)
T ss_dssp --CGGG--CSCTTEEEEEEEC-----------------------------------------------------------
T ss_pred --cccc--cccccccEEEEEc-----------------------------------------------------------
Confidence 0000 0000000000000
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHH
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVD 1389 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~ 1389 (2240)
.....|+..|..++.. ..+.++||||+....++.+.++|...++.+..+||+++.++|.++++.
T Consensus 225 --------------~~~~~~~~~l~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 288 (395)
T 3pey_A 225 --------------KNEADKFDVLTELYGL--MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDD 288 (395)
T ss_dssp --------------SSHHHHHHHHHHHHTT--TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHH
T ss_pred --------------CchHHHHHHHHHHHHh--ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHH
Confidence 0012244444444433 246899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC------ChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1390 FNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP------NPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1390 FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW------NP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
|+++... +|++|+++++|||++++++||+||+|| |+..|+|++||++|.|++..+.++..
T Consensus 289 f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 354 (395)
T 3pey_A 289 FREGRSK---VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVH 354 (395)
T ss_dssp HHTTSCC---EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred HHCCCCC---EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEe
Confidence 9976554 799999999999999999999999999 99999999999999998887777654
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-30 Score=306.47 Aligned_cols=202 Identities=17% Similarity=0.208 Sum_probs=152.7
Q ss_pred CCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCc-cc-
Q 000099 1240 LPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYF-SD- 1317 (2240)
Q Consensus 1240 LP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~-~~- 1317 (2240)
.|.+.|+++.|.||..|+.+|+.+.......+ .................+.+.+|+||+|||||+|+...+ ..
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I-----~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~ 94 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDI-----LRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKS 94 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHH-----HHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSC
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHH-----HHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCcc
Confidence 48999999999999999999999865321111 111111111112335688999999999999999985322 11
Q ss_pred ----cchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcC
Q 000099 1318 ----LSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSH 1393 (2240)
Q Consensus 1318 ----ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~ 1393 (2240)
...+.++..||||.+|+++|..+.+.+||||||||++.++|+|++||..+|+.|+|+||++...+ .+ ..
T Consensus 95 ~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k------~~ 167 (328)
T 3hgt_A 95 LITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AA------AN 167 (328)
T ss_dssp SCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--------------
T ss_pred ccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hh------cc
Confidence 12456788999999999999999999999999999999999999999999999999999965432 22 12
Q ss_pred CCCccEEEEecccccccCC-----CCCCCeEEEcCCCCChhhH-HHHhhhhhcc--CCcceEEEEEEeh
Q 000099 1394 DSDCFIFLLSIRAAGRGLN-----LQSADTVIIYDPDPNPKNE-EQAVARAHRI--GQKREVKVIYMEA 1454 (2240)
Q Consensus 1394 Ds~~fVfLLSTrAGGeGLN-----LQaADtVIifD~pWNP~~d-~QAiGRAhRI--GQKKeV~VyrLvT 1454 (2240)
+..++|||+ |++||.|+| |.+||+||+||++|||+.+ +||+.|+||+ ||++.|.||||++
T Consensus 168 ~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt 235 (328)
T 3hgt_A 168 DFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVA 235 (328)
T ss_dssp CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEE
T ss_pred cCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeC
Confidence 456888887 568888886 8999999999999999998 9999999999 7899999999987
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-29 Score=304.30 Aligned_cols=312 Identities=18% Similarity=0.221 Sum_probs=221.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-----CCCCeEEEechH-HHHHHHHHHHHHC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-----NYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-----~~GP~LIVVP~S-LL~QW~~Ef~Kw~ 1073 (2240)
+++|+|..++.+++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |+.||..++.+++
T Consensus 78 ~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 78 IPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 699999999998875 788999999999999988776655443322 245799999976 7889999999997
Q ss_pred C--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCch--hHHHHHhhc
Q 000099 1074 P--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDR 1147 (2240)
Q Consensus 1074 P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~ 1147 (2240)
. .+++.+++|+....... .......+|+|+|++.+..... .+...++++|||||||++.+.. ..+...+..
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~---~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~ 230 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQN---ECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH 230 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHH---HHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHC
T ss_pred ccCCcEEEEEECCCCHHHHH---HHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHh
Confidence 4 46666777765443322 1223578999999999976532 3344578999999999997643 334444444
Q ss_pred c---ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q 000099 1148 Y---RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQIL 1224 (2240)
Q Consensus 1148 L---ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklL 1224 (2240)
+ .....+++|||+- .++..+.... +..+....
T Consensus 231 ~~~~~~~q~l~~SAT~~----~~~~~~~~~~--------------l~~~~~i~--------------------------- 265 (434)
T 2db3_A 231 VTMRPEHQTLMFSATFP----EEIQRMAGEF--------------LKNYVFVA--------------------------- 265 (434)
T ss_dssp TTSCSSCEEEEEESCCC----HHHHHHHHTT--------------CSSCEEEE---------------------------
T ss_pred cCCCCCceEEEEeccCC----HHHHHHHHHh--------------ccCCEEEE---------------------------
Confidence 3 3456899999972 1222211110 00000000
Q ss_pred hHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHH
Q 000099 1225 EPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKT 1304 (2240)
Q Consensus 1225 rPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKI 1304 (2240)
...+..........++.|
T Consensus 266 --------~~~~~~~~~~i~~~~~~~------------------------------------------------------ 283 (434)
T 2db3_A 266 --------IGIVGGACSDVKQTIYEV------------------------------------------------------ 283 (434)
T ss_dssp --------ESSTTCCCTTEEEEEEEC------------------------------------------------------
T ss_pred --------eccccccccccceEEEEe------------------------------------------------------
Confidence 000000000001111111
Q ss_pred cCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHH
Q 000099 1305 CNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRE 1384 (2240)
Q Consensus 1305 CNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eERe 1384 (2240)
....|...|..+|.. .+.++||||+....++.|.++|...|+.+..+||+++..+|.
T Consensus 284 --------------------~~~~k~~~l~~~l~~---~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~ 340 (434)
T 2db3_A 284 --------------------NKYAKRSKLIEILSE---QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQRE 340 (434)
T ss_dssp --------------------CGGGHHHHHHHHHHH---CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHH
T ss_pred --------------------CcHHHHHHHHHHHHh---CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHH
Confidence 012244444444443 345699999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1385 SAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1385 eaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
.+++.|+++... +|++|+++++|||++.+++||+||+||++..|+||+||++|.|++..+.+|+
T Consensus 341 ~~l~~F~~g~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 341 QALRDFKNGSMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp HHHHHHHTSSCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred HHHHHHHcCCCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEE
Confidence 999999976555 7999999999999999999999999999999999999999999988776664
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=294.60 Aligned_cols=316 Identities=21% Similarity=0.244 Sum_probs=217.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC------------------CCCeEEEechH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN------------------YGPHLIIVPNA 1060 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~------------------~GP~LIVVP~S 1060 (2240)
..|+|+|.+++..++. +.+.|++.+||+|||++++..+...+...+. ...+|||||+.
T Consensus 36 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 3799999999987765 7789999999999999877655544332221 24689999975
Q ss_pred -HHHHHHHHHHHHCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccC
Q 000099 1061 -VLVNWKSELHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMK 1135 (2240)
Q Consensus 1061 -LL~QW~~Ef~Kw~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLK 1135 (2240)
|+.||.+++.+|+. ++.+..++|+....... .......+|+|+|++.+..... .+....+++|||||||++.
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~ 188 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQI---RDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRML 188 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHH---HHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHH---HHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhh
Confidence 78899999999864 56777777765543322 1223468999999999976532 2444578999999999986
Q ss_pred Cch--hHHHHHhhc--cc---cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhH
Q 000099 1136 DRE--SVLARDLDR--YR---CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWL 1208 (2240)
Q Consensus 1136 N~~--SKlskaLk~--Lk---s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l 1208 (2240)
... ..+...+.. +. ....+++|||+-. ++..++. .++..++.....
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~--------------~~~~~~~~~~~~--------- 241 (417)
T 2i4i_A 189 DMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLAR--------------DFLDEYIFLAVG--------- 241 (417)
T ss_dssp HTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHH--------------HHCSSCEEEEEC---------
T ss_pred ccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHH--------------HHcCCCEEEEeC---------
Confidence 432 233333332 11 3468999999721 1111111 111111000000
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHH
Q 000099 1209 ETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQA 1288 (2240)
Q Consensus 1209 ~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~a 1288 (2240)
......+.....++.+.
T Consensus 242 --------------------------~~~~~~~~i~~~~~~~~------------------------------------- 258 (417)
T 2i4i_A 242 --------------------------RVGSTSENITQKVVWVE------------------------------------- 258 (417)
T ss_dssp ------------------------------CCSSEEEEEEECC-------------------------------------
T ss_pred --------------------------CCCCCccCceEEEEEec-------------------------------------
Confidence 00000011111111111
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcC
Q 000099 1289 KVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ 1368 (2240)
Q Consensus 1289 k~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rG 1368 (2240)
...|...|..++... ..+.++||||+....++.+.++|...|
T Consensus 259 -------------------------------------~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~ 300 (417)
T 2i4i_A 259 -------------------------------------ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEG 300 (417)
T ss_dssp -------------------------------------GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred -------------------------------------cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCC
Confidence 112334444444432 356799999999999999999999999
Q ss_pred ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEE
Q 000099 1369 LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVK 1448 (2240)
Q Consensus 1369 iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~ 1448 (2240)
+.+..+||.++.++|..+++.|++++.. +|++|+++++|||++.+++||+||++|++..|+|++||++|.|+...+.
T Consensus 301 ~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 377 (417)
T 2i4i_A 301 YACTSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLAT 377 (417)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEE
T ss_pred CCeeEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEE
Confidence 9999999999999999999999986655 7999999999999999999999999999999999999999999887666
Q ss_pred EEEE
Q 000099 1449 VIYM 1452 (2240)
Q Consensus 1449 VyrL 1452 (2240)
+++.
T Consensus 378 ~~~~ 381 (417)
T 2i4i_A 378 SFFN 381 (417)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5543
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=289.50 Aligned_cols=298 Identities=17% Similarity=0.191 Sum_probs=208.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.|+|||.+++.+++. +.++|++++||+|||++++..+... ..++|||||.. ++.||..++.+|.. ++
T Consensus 16 ~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcCC
Confidence 699999999999885 6789999999999999887766432 45899999975 78999999999875 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhcccc-c
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYRC-Q 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lks-~ 1151 (2240)
.+..++|........ ......+|+|+|++.+.... ..+...+|++|||||||++.+.. ..+...+..+.. .
T Consensus 86 ~~~~~~~~~~~~~~~----~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T 2z0m_A 86 KVAEVYGGMPYKAQI----NRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK 161 (337)
T ss_dssp CEEEECTTSCHHHHH----HHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCS
T ss_pred cEEEEECCcchHHHH----hhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCccc
Confidence 777777765443221 12245899999999997643 23344578999999999986433 233334444443 4
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
..+++||||-.. +..++ ..++..+....
T Consensus 162 ~~~~~SAT~~~~----~~~~~--------------~~~~~~~~~~~---------------------------------- 189 (337)
T 2z0m_A 162 ITGLFSATIPEE----IRKVV--------------KDFITNYEEIE---------------------------------- 189 (337)
T ss_dssp EEEEEESCCCHH----HHHHH--------------HHHSCSCEEEE----------------------------------
T ss_pred EEEEEeCcCCHH----HHHHH--------------HHhcCCceeee----------------------------------
Confidence 466789998321 11111 11111110000
Q ss_pred hhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
.. ..++......+.+...
T Consensus 190 --~~--~~~~~~~~~~~~~~~~---------------------------------------------------------- 207 (337)
T 2z0m_A 190 --AC--IGLANVEHKFVHVKDD---------------------------------------------------------- 207 (337)
T ss_dssp --CS--GGGGGEEEEEEECSSS----------------------------------------------------------
T ss_pred --cc--cccCCceEEEEEeChH----------------------------------------------------------
Confidence 00 0000001111111000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHh
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FN 1391 (2240)
...+...+. ...+.++||||+....++.+.+.|. .+..++|+++..+|.++++.|+
T Consensus 208 ------------------~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~ 263 (337)
T 2z0m_A 208 ------------------WRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFR 263 (337)
T ss_dssp ------------------SHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHH
T ss_pred ------------------HHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHH
Confidence 000000111 1357899999999999999999887 5788999999999999999999
Q ss_pred cCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1392 s~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
++... +|++|+++++|||++.+++||+||++||+..|.|++||++|.|++..|.+|..
T Consensus 264 ~~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 264 EGEYD---MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp TTSCS---EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred cCCCc---EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 76554 79999999999999999999999999999999999999999999988888765
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-30 Score=306.47 Aligned_cols=315 Identities=15% Similarity=0.171 Sum_probs=116.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--s 1075 (2240)
.+|+|||.+++.+++. +.++|++++||+|||++++..+...+......+++|||||.. ++.||.+++.+++. +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 3799999999999887 678999999999999997766665544344556899999974 78899999999975 4
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhccc-c
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-C 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk-s 1150 (2240)
+.+..+.|......... .....+|+|+|++.+..... .+...+|++|||||||++.+. ...+...+..+. .
T Consensus 118 ~~~~~~~g~~~~~~~~~----~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~ 193 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAE----GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT 193 (394)
T ss_dssp CCEEEECSSCCHHHHHH----HHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTT
T ss_pred eeEEEEeCCCchHHHHh----hcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCC
Confidence 67777777654432221 12267999999999876532 344457999999999998532 233444444443 4
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.++++|||||-. ++..++ ..++..|.
T Consensus 194 ~~~i~~SAT~~~----~~~~~~--------------~~~~~~~~------------------------------------ 219 (394)
T 1fuu_A 194 TQVVLLSATMPN----DVLEVT--------------TKFMRNPV------------------------------------ 219 (394)
T ss_dssp CEEEEECSSCCH----HHHHHH--------------HHHCCSCE------------------------------------
T ss_pred ceEEEEEEecCH----HHHHHH--------------HHhcCCCe------------------------------------
Confidence 568999999831 111111 11111110
Q ss_pred hhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCC
Q 000099 1231 RRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLL 1310 (2240)
Q Consensus 1231 RlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L 1310 (2240)
. +.+.-.. .. ...+ .... ..+
T Consensus 220 --------------~--~~~~~~~--~~-~~~~-------------------------------~~~~----~~~----- 240 (394)
T 1fuu_A 220 --------------R--ILVKKDE--LT-LEGI-------------------------------KQFY----VNV----- 240 (394)
T ss_dssp --------------E--EEECC----------------------------------------------------------
T ss_pred --------------E--EEecCcc--cc-CCCc-------------------------------eEEE----EEc-----
Confidence 0 0000000 00 0000 0000 000
Q ss_pred CCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHH
Q 000099 1311 NYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDF 1390 (2240)
Q Consensus 1311 ~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~F 1390 (2240)
.....|...|..++... .+.++||||+....++.+.+.|...++.+..+||+++.++|..+++.|
T Consensus 241 -------------~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 305 (394)
T 1fuu_A 241 -------------EEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEF 305 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------CchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHH
Confidence 00012444455555432 457999999999999999999999999999999999999999999999
Q ss_pred hcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1391 NSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1391 Ns~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+++... +|++|+++++|||++.+++||+||++|++..|.|++||++|.|++..|.+++.
T Consensus 306 ~~~~~~---vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 364 (394)
T 1fuu_A 306 RSGSSR---ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 364 (394)
T ss_dssp --------------------------------------------------------------
T ss_pred HCCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEc
Confidence 875544 78999999999999999999999999999999999999999998877766543
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-28 Score=288.17 Aligned_cols=315 Identities=17% Similarity=0.182 Sum_probs=218.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---P 1074 (2240)
..++|||.+++..++.. .+.+.|++.+||+|||++++..+...+......+.+|||||.. |+.||...+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 37999999999888751 3478899999999999998776665544344455899999977 6788888777765 5
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh---hhccccCcceEecccccccCC--chh-HHHHHhhcc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR---SKLSKVDWKYIIIDEAQRMKD--RES-VLARDLDRY 1148 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~---s~L~kikWd~VIIDEAHrLKN--~~S-KlskaLk~L 1148 (2240)
.+.+.+..+...... ......+|+|+|++.+.... ..+...+|++|||||||++.. ... .....+..+
T Consensus 124 ~~~~~~~~~~~~~~~------~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 197 (412)
T 3fht_A 124 ELKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 197 (412)
T ss_dssp TCCEEEECTTCCCCT------TCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS
T ss_pred cceEEEeecCcchhh------hhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC
Confidence 677777766543321 12345799999999997654 233345799999999999854 222 223333333
Q ss_pred c-cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1149 R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1149 k-s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
. ....++|||||-. +++.++..+ +..+..... .
T Consensus 198 ~~~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~~~-----~----------------------- 231 (412)
T 3fht_A 198 PRNCQMLLFSATFED----SVWKFAQKV--------------VPDPNVIKL-----K----------------------- 231 (412)
T ss_dssp CTTCEEEEEESCCCH----HHHHHHHHH--------------SSSCEEECC-----C-----------------------
T ss_pred CCCceEEEEEeecCH----HHHHHHHHh--------------cCCCeEEee-----c-----------------------
Confidence 3 3468999999832 222211111 100000000 0
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
. ....++......+.+.
T Consensus 232 ------~-~~~~~~~~~~~~~~~~-------------------------------------------------------- 248 (412)
T 3fht_A 232 ------R-EEETLDTIKQYYVLCS-------------------------------------------------------- 248 (412)
T ss_dssp ------G-GGSSCTTEEEEEEECS--------------------------------------------------------
T ss_pred ------c-ccccccCceEEEEEcC--------------------------------------------------------
Confidence 0 0000000011111100
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
....|+..|..++... .+.++||||+....++.|.++|...++.+..+||.++.++|..++
T Consensus 249 -----------------~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 309 (412)
T 3fht_A 249 -----------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 309 (412)
T ss_dssp -----------------SHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred -----------------ChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHH
Confidence 0112455555555542 467999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCCh------hhHHHHhhhhhccCCcceEEEEEE
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP------~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+.|+++... +|++|+++++|||++++++||+||+||++ ..|+|++||++|.|+...+.+++.
T Consensus 310 ~~f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 377 (412)
T 3fht_A 310 ERFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 377 (412)
T ss_dssp HHHHTTSCS---EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred HHHHCCCCc---EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEc
Confidence 999976554 79999999999999999999999999876 699999999999998777666543
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=281.12 Aligned_cols=304 Identities=17% Similarity=0.231 Sum_probs=212.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SV 1076 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-sl 1076 (2240)
.+|+|||.+++..++. +.+.|++.+||+|||+.++..+..+. ...+.+|||||+. |+.||..+|.+|++ ++
T Consensus 20 ~~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 4689999999988875 66899999999999996666555443 3456899999975 78999999999986 77
Q ss_pred eEEEEecchhhHhH-HHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC-------------chhH-H
Q 000099 1077 SCIYYVGAKDQRSR-LFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-------------RESV-L 1141 (2240)
Q Consensus 1077 kVvvy~GskdeRk~-l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN-------------~~SK-l 1141 (2240)
++..++|+.....+ .....+.....+|+|+|++.+......+...++++|||||||++.. .... +
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~ 172 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEII 172 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHH
T ss_pred eEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHH
Confidence 88888887654211 1111233456899999999998776666667899999999998732 1112 2
Q ss_pred HHHhhcc------------ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHH
Q 000099 1142 ARDLDRY------------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLE 1209 (2240)
Q Consensus 1142 skaLk~L------------ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~ 1209 (2240)
...+..+ .....+++||||....+.+.+ +..++......
T Consensus 173 ~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~----------------~~~~~~~~~~~------------- 223 (414)
T 3oiy_A 173 RKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVGR------------- 223 (414)
T ss_dssp HHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHH----------------HHHHHSCCSSC-------------
T ss_pred HHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHH----------------HHHhhccCcCc-------------
Confidence 2333333 345689999997554422111 00000000000
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHH
Q 000099 1210 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAK 1289 (2240)
Q Consensus 1210 ~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak 1289 (2240)
....+......+.
T Consensus 224 ---------------------------~~~~~~~i~~~~~---------------------------------------- 236 (414)
T 3oiy_A 224 ---------------------------LVSVARNITHVRI---------------------------------------- 236 (414)
T ss_dssp ---------------------------CCCCCCSEEEEEE----------------------------------------
T ss_pred ---------------------------cccccccchheee----------------------------------------
Confidence 0000111111100
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCc
Q 000099 1290 VYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQL 1369 (2240)
Q Consensus 1290 ~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGi 1369 (2240)
...|...|..+|.. .+.++||||+....++.|.++|...|+
T Consensus 237 ------------------------------------~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~ 277 (414)
T 3oiy_A 237 ------------------------------------SSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKF 277 (414)
T ss_dssp ------------------------------------SSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred ------------------------------------ccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 01233444445544 358999999999999999999999999
Q ss_pred eEE-eecCCCCHHHHHHHHHHHhcCCCCccEEEEe----cccccccCCCCC-CCeEEEcCCC--CChhhHHHHhhhhhcc
Q 000099 1370 VYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPD--PNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1370 ky~-rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS----TrAGGeGLNLQa-ADtVIifD~p--WNP~~d~QAiGRAhRI 1441 (2240)
.+. .+||. +|. ++.|++++.+ +|++ |+++++|||+++ +++||+||+| +++..|+|++||++|.
T Consensus 278 ~~~~~~h~~----~r~--~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 278 NVGETWSEF----EKN--FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp CEEESSSCH----HHH--HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCE
T ss_pred ceehhhcCc----chH--HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccC
Confidence 998 99994 444 9999976544 5666 999999999999 9999999999 9999999999999999
Q ss_pred CCc--ceEEEEEEe
Q 000099 1442 GQK--REVKVIYME 1453 (2240)
Q Consensus 1442 GQK--KeV~VyrLv 1453 (2240)
|+. +.-.++.|+
T Consensus 349 g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 349 LNGVLVKGVSVIFE 362 (414)
T ss_dssp ETTEECCEEEEEEC
T ss_pred CCCCCcceEEEEEE
Confidence 975 344455543
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-26 Score=293.09 Aligned_cols=306 Identities=17% Similarity=0.172 Sum_probs=220.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
..++|+|.+++..++. +.++|+..+||+|||++++..+. . ..+.+|||+|+. |+.+|..++.++ ++.
T Consensus 24 ~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l--~----~~g~~lvi~P~~aL~~q~~~~l~~~--gi~ 91 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPAL--L----LNGLTVVVSPLISLMKDQVDQLQAN--GVA 91 (523)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHH--H----SSSEEEEECSCHHHHHHHHHHHHHT--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHH--H----hCCCEEEECChHHHHHHHHHHHHHc--CCc
Confidence 3799999999999885 67899999999999987764443 1 136799999975 788899999986 566
Q ss_pred EEEEecchhhHhH-HHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCCch---hHHHHHh----hc
Q 000099 1078 CIYYVGAKDQRSR-LFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRE---SVLARDL----DR 1147 (2240)
Q Consensus 1078 Vvvy~GskdeRk~-l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN~~---SKlskaL----k~ 1147 (2240)
+.++++....... ...........+|+++|++.+... ...+...++.+|||||||.+.... ...+..+ ..
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~ 171 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh
Confidence 6667665432211 111234456789999999999643 234555789999999999996532 1222222 33
Q ss_pred cccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1148 YRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1148 Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
+....+++|||||......++...+.+-.|.++.. .+
T Consensus 172 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------~~--------------------------------- 208 (523)
T 1oyw_A 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------SF--------------------------------- 208 (523)
T ss_dssp CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC----------CC---------------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC----------CC---------------------------------
Confidence 44567899999996555555555444322211100 00
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
..|.....++.
T Consensus 209 -----------~r~~l~~~v~~---------------------------------------------------------- 219 (523)
T 1oyw_A 209 -----------DRPNIRYMLME---------------------------------------------------------- 219 (523)
T ss_dssp -----------CCTTEEEEEEE----------------------------------------------------------
T ss_pred -----------CCCceEEEEEe----------------------------------------------------------
Confidence 00100000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
...++..|..+|.. ..+.++||||..+..++.+.++|...|+.+..+||+++.++|..++
T Consensus 220 ------------------~~~~~~~l~~~l~~--~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 220 ------------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp ------------------CSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred ------------------CCCHHHHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 01122233333332 2567999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+.|..++.. +|++|.++|+|||++++++||+||+|||+..|.|++||++|.|+...+.+++
T Consensus 280 ~~f~~g~~~---vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 280 EKFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp HHHHTTSCS---EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred HHHHcCCCe---EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEe
Confidence 999976654 7899999999999999999999999999999999999999999888776654
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-26 Score=292.68 Aligned_cols=324 Identities=17% Similarity=0.212 Sum_probs=216.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHHHHC-
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELHKWL- 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~S-LL~QW~~Ef~Kw~- 1073 (2240)
.|+|||.+++..++. ..+.+.|+..+||+|||++++..+...+.... ....+|||||+. |+.||..++.+++
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 699999999988772 13567899999999999998777766554332 234789999975 7789999999874
Q ss_pred -----CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---ccccCcceEecccccccCCch--hHHHH
Q 000099 1074 -----PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLAR 1143 (2240)
Q Consensus 1074 -----PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrLKN~~--SKlsk 1143 (2240)
+.+.+..+.|+......+. .......+|+|+|++.+...... .....+++|||||||++.... ..+..
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~ 198 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMN--KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 198 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHH--HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hcccccceEEEEEECCccHHHHHH--HHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHH
Confidence 4566777777655443321 23345789999999999765322 223468999999999987543 22222
Q ss_pred Hhhcc---c-----cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHH
Q 000099 1144 DLDRY---R-----CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 1215 (2240)
Q Consensus 1144 aLk~L---k-----s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~l 1215 (2240)
.+..+ . ....++||||+-. .+. .++..++. .+....
T Consensus 199 i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~---~~~~~~l~--------------~~~~~~------------------ 242 (579)
T 3sqw_A 199 ISGILNEKNSKSADNIKTLLFSATLDD-KVQ---KLANNIMN--------------KKECLF------------------ 242 (579)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCT-HHH---HHTTTTCC--------------SSEEEE------------------
T ss_pred HHHHhhhhhcccccCceEEEEeccCCh-HHH---HHHHHHcC--------------CCceEE------------------
Confidence 22222 1 3468999999632 111 11111100 000000
Q ss_pred HHHHHHHHhhHHHHHhhhhhhccCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHH
Q 000099 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTL 1294 (2240)
Q Consensus 1216 ii~RLhklLrPFmLRRlKkDVekdLP~KvE-~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL 1294 (2240)
+... ............ ..+.+.-.
T Consensus 243 -------------~~~~-~~~~~~~~~~i~~~~~~~~~~----------------------------------------- 267 (579)
T 3sqw_A 243 -------------LDTV-DKNEPEAHERIDQSVVISEKF----------------------------------------- 267 (579)
T ss_dssp -------------EESS-CSSSCSSCTTEEEEEEEESST-----------------------------------------
T ss_pred -------------Eeec-CccccccccccceEEEEecch-----------------------------------------
Confidence 0000 000000000111 11111000
Q ss_pred HHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhc---Cc
Q 000099 1295 NNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR---QL 1369 (2240)
Q Consensus 1295 ~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~r---Gi 1369 (2240)
...+...+..++..+. ..+.++||||.....++.|.+.|... ++
T Consensus 268 -------------------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~ 316 (579)
T 3sqw_A 268 -------------------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDL 316 (579)
T ss_dssp -------------------------------THHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTS
T ss_pred -------------------------------hhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCC
Confidence 0011122222222222 35789999999999999999999987 99
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEE
Q 000099 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (2240)
Q Consensus 1370 ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~V 1449 (2240)
.+..+||.++..+|..+++.|+.+... +||+|+++++|||++.+++||+||+||++..|+|++||++|.|+...+.+
T Consensus 317 ~v~~~hg~~~~~~R~~~~~~F~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~ 393 (579)
T 3sqw_A 317 PILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL 393 (579)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE
T ss_pred cEEEecCCCCHHHHHHHHHHhhcCCCe---EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEE
Confidence 999999999999999999999975544 79999999999999999999999999999999999999999998877766
Q ss_pred EEE
Q 000099 1450 IYM 1452 (2240)
Q Consensus 1450 yrL 1452 (2240)
++.
T Consensus 394 ~~~ 396 (579)
T 3sqw_A 394 FIC 396 (579)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-26 Score=287.39 Aligned_cols=324 Identities=18% Similarity=0.211 Sum_probs=214.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC----CCCeEEEechH-HHHHHHHHHHHHC-
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN----YGPHLIIVPNA-VLVNWKSELHKWL- 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~----~GP~LIVVP~S-LL~QW~~Ef~Kw~- 1073 (2240)
.|+|||.+++..++. ..+.+.|++.+||+|||++++..+...+..... ...+|||||+. |+.||..+|.+++
T Consensus 94 ~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 699999999988872 135678999999999999988777665543321 24789999975 7788999999863
Q ss_pred -----CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---ccccCcceEecccccccCCch--hHHHH
Q 000099 1074 -----PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDRE--SVLAR 1143 (2240)
Q Consensus 1074 -----PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrLKN~~--SKlsk 1143 (2240)
+.+.+..+.|......... .......+|+|+|++.+...... .....+++|||||||++.... ..+..
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~ 249 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAAMN--KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 249 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHH--HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hccccCceeEEEEECCcCHHHHHH--HHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHH
Confidence 3456676777654433221 23345789999999999764322 122358999999999986543 22222
Q ss_pred Hhhcc---c-----cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHH
Q 000099 1144 DLDRY---R-----CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVI 1215 (2240)
Q Consensus 1144 aLk~L---k-----s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~l 1215 (2240)
.+..+ . ....++||||+-. . +..++..+.. .+....
T Consensus 250 i~~~l~~~~~~~~~~~~~l~~SAT~~~-~---v~~~~~~~~~--------------~~~~~~------------------ 293 (563)
T 3i5x_A 250 ISGILNEKNSKSADNIKTLLFSATLDD-K---VQKLANNIMN--------------KKECLF------------------ 293 (563)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCT-H---HHHHTTTTCC--------------SSEEEE------------------
T ss_pred HHHhhhhccccCccCceEEEEEccCCH-H---HHHHHHHhcC--------------CCceEE------------------
Confidence 22222 1 3358999999732 1 1111111100 000000
Q ss_pred HHHHHHHHhhHHHHHhhhhhhccCCCCceE-EEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHH
Q 000099 1216 IIHRLHQILEPFMLRRRVEDVEGSLPPKVS-IVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTL 1294 (2240)
Q Consensus 1216 ii~RLhklLrPFmLRRlKkDVekdLP~KvE-~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL 1294 (2240)
+. .............. ..+.+...
T Consensus 294 -------------~~-~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 318 (563)
T 3i5x_A 294 -------------LD-TVDKNEPEAHERIDQSVVISEKF----------------------------------------- 318 (563)
T ss_dssp -------------EE-SSCSSSCSSCTTEEEEEEEESST-----------------------------------------
T ss_pred -------------Ee-ccCCCCccccccCceEEEECchh-----------------------------------------
Confidence 00 00000000000111 11111000
Q ss_pred HHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhc---Cc
Q 000099 1295 NNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWR---QL 1369 (2240)
Q Consensus 1295 ~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~r---Gi 1369 (2240)
.......+..++..+. ..+.++||||.....++.+.++|... ++
T Consensus 319 -------------------------------~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~ 367 (563)
T 3i5x_A 319 -------------------------------ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDL 367 (563)
T ss_dssp -------------------------------THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTS
T ss_pred -------------------------------HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCc
Confidence 0001111222222222 45789999999999999999999987 99
Q ss_pred eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEE
Q 000099 1370 VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (2240)
Q Consensus 1370 ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~V 1449 (2240)
.+..+||.++..+|..+++.|+.+... +||+|+++++|||++.+++||+||+|+++..|+|++||++|.|....+.+
T Consensus 368 ~v~~~h~~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~ 444 (563)
T 3i5x_A 368 PILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVL 444 (563)
T ss_dssp CEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHHHhcCCCC---EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEE
Confidence 999999999999999999999986544 79999999999999999999999999999999999999999998777766
Q ss_pred EEE
Q 000099 1450 IYM 1452 (2240)
Q Consensus 1450 yrL 1452 (2240)
++.
T Consensus 445 ~~~ 447 (563)
T 3i5x_A 445 FIC 447 (563)
T ss_dssp EEE
T ss_pred EEc
Confidence 654
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=290.72 Aligned_cols=309 Identities=16% Similarity=0.126 Sum_probs=215.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Pslk 1077 (2240)
..++|||.+++..++. +.++|+..+||+|||++++..+.. ..+.+|||+|+ +|+.+|...|.++ ++.
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 3799999999998886 778999999999999877655432 24689999996 5788999999998 677
Q ss_pred EEEEecchhhH--hHHHHHHH--hhcCCcEEEEcHHHHHHh---hh----hccccCcceEecccccccCCch-------h
Q 000099 1078 CIYYVGAKDQR--SRLFSQEV--AALKFNVLVTTYEFIMYD---RS----KLSKVDWKYIIIDEAQRMKDRE-------S 1139 (2240)
Q Consensus 1078 Vvvy~GskdeR--k~l~~qei--~~~~fdVVITTYE~L~kD---~s----~L~kikWd~VIIDEAHrLKN~~-------S 1139 (2240)
+.++.|..... ...+. .. .....+|+|+|++.+... .. .+....+.+|||||||.+.... .
T Consensus 111 ~~~l~~~~~~~~~~~~~~-~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~ 189 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHA-EMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYK 189 (591)
T ss_dssp EEECCSSCCHHHHHHHHH-HHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGG
T ss_pred EEEEeCCCCHHHHHHHHH-HhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHH
Confidence 77777654322 22211 12 346789999999988532 12 2223478999999999986432 1
Q ss_pred HHHHHhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHH
Q 000099 1140 VLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHR 1219 (2240)
Q Consensus 1140 KlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~R 1219 (2240)
.+......+....+|+|||||-.....++..+|.+-.+..+.. .
T Consensus 190 ~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~----------~-------------------------- 233 (591)
T 2v1x_A 190 ALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA----------S-------------------------- 233 (591)
T ss_dssp GGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC----------C--------------------------
T ss_pred HHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec----------C--------------------------
Confidence 2222223445667999999995433333333222111100000 0
Q ss_pred HHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHH
Q 000099 1220 LHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCM 1299 (2240)
Q Consensus 1220 LhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilm 1299 (2240)
...|.....+....
T Consensus 234 ------------------~~r~nl~~~v~~~~------------------------------------------------ 247 (591)
T 2v1x_A 234 ------------------FNRPNLYYEVRQKP------------------------------------------------ 247 (591)
T ss_dssp ------------------CCCTTEEEEEEECC------------------------------------------------
T ss_pred ------------------CCCcccEEEEEeCC------------------------------------------------
Confidence 00011100110000
Q ss_pred HHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCC
Q 000099 1300 ELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT 1377 (2240)
Q Consensus 1300 qLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGs 1377 (2240)
..+...+..++..+. ..+.++||||..+..++.|..+|...|+.+..+||+
T Consensus 248 ---------------------------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~ 300 (591)
T 2v1x_A 248 ---------------------------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHAN 300 (591)
T ss_dssp ---------------------------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred ---------------------------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 001111222222222 146899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1378 TSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1378 Ts~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
++.++|..++++|..++.. +||+|.++|+|||++++++||+||+|+++..|.|++||++|.|+...+.+++-
T Consensus 301 l~~~~R~~~~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~ 372 (591)
T 2v1x_A 301 LEPEDKTTVHRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYG 372 (591)
T ss_dssp SCHHHHHHHHHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEC
Confidence 9999999999999976555 79999999999999999999999999999999999999999998887776643
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=304.57 Aligned_cols=305 Identities=17% Similarity=0.203 Sum_probs=217.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps 1075 (2240)
.+++|||.+++.+++.....+. ++||+++||+|||++++..+..+.. ....+|||||+. |+.||..+|.++++.
T Consensus 602 ~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 4789999999999998666554 7899999999999998765544432 335899999987 678899999999875
Q ss_pred --CeEEEEecch--hhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcccc-
Q 000099 1076 --VSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC- 1150 (2240)
Q Consensus 1076 --lkVvvy~Gsk--deRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks- 1150 (2240)
+.+.+++|.. ..+...+ .....+..+|+|+|++.+.++ +...+|++|||||||++.. .....+..+..
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~-~~l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g~---~~~~~l~~l~~~ 751 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQIL-AEVAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFGV---RHKERIKAMRAN 751 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHH-HHHHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSCH---HHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHhCC---ccccccceEEEechHhcCh---HHHHHHHHhcCC
Confidence 5667776643 2332222 234456799999999988543 3345789999999999743 34455555543
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.++|+|||||+.+.+...+. .+..+.+
T Consensus 752 ~~vl~lSATp~p~~l~~~~~--~~~~~~~--------------------------------------------------- 778 (1151)
T 2eyq_A 752 VDILTLTATPIPRTLNMAMS--GMRDLSI--------------------------------------------------- 778 (1151)
T ss_dssp SEEEEEESSCCCHHHHHHHT--TTSEEEE---------------------------------------------------
T ss_pred CCEEEEcCCCChhhHHHHHh--cCCCceE---------------------------------------------------
Confidence 56899999997654221110 0000000
Q ss_pred hhhhhhccCCCCce--EEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCC
Q 000099 1231 RRVEDVEGSLPPKV--SIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHP 1308 (2240)
Q Consensus 1231 RlKkDVekdLP~Kv--E~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP 1308 (2240)
....|... .......
T Consensus 779 ------i~~~~~~r~~i~~~~~~--------------------------------------------------------- 795 (1151)
T 2eyq_A 779 ------IATPPARRLAVKTFVRE--------------------------------------------------------- 795 (1151)
T ss_dssp ------CCCCCCBCBCEEEEEEE---------------------------------------------------------
T ss_pred ------EecCCCCccccEEEEec---------------------------------------------------------
Confidence 00000000 0000000
Q ss_pred CCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCHHHHHHH
Q 000099 1309 LLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESA 1386 (2240)
Q Consensus 1309 ~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~eEReea 1386 (2240)
..+..++..++..+ ..+.+|||||+.+..++.+.+.|... ++.+..+||.++..+|.++
T Consensus 796 ------------------~~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~i 856 (1151)
T 2eyq_A 796 ------------------YDSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 856 (1151)
T ss_dssp ------------------CCHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHH
T ss_pred ------------------CCHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHH
Confidence 00111222233332 35789999999999999999999988 8899999999999999999
Q ss_pred HHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCC-CCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1387 IVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP-DPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1387 Ik~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~-pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++|+++..+ +||+|+++++|||++++++||+++. .|++..+.|++||++|.|++..|++++
T Consensus 857 l~~F~~g~~~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~ 919 (1151)
T 2eyq_A 857 MNDFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 919 (1151)
T ss_dssp HHHHHTTSCC---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred HHHHHcCCCc---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEE
Confidence 9999976555 7999999999999999999999999 589999999999999999776665543
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-26 Score=287.63 Aligned_cols=314 Identities=18% Similarity=0.221 Sum_probs=110.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHH---CC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKW---LP 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw---~P 1074 (2240)
..++|+|..++..++. ..+.+.|++.+||+|||++++..+...+........+|||||.. |..||...+.++ ++
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3799999999998875 23477899999999999998766655443333444799999977 667776666554 56
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh---hccccCcceEecccccccCCc--h-hHHHHHhhcc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--E-SVLARDLDRY 1148 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrLKN~--~-SKlskaLk~L 1148 (2240)
.+.+.+..+...... ......+|+|+|++.+..... .+...++++|||||||++... . ......+..+
T Consensus 191 ~~~~~~~~~~~~~~~------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~ 264 (479)
T 3fmp_B 191 ELKLAYAVRGNKLER------GQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (479)
T ss_dssp TCCEEEESTTCCCCT------TCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS
T ss_pred CceEEEEeCCccccc------cccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC
Confidence 777777766543221 113356899999999976542 333457899999999998542 2 2223333333
Q ss_pred c-cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHH
Q 000099 1149 R-CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPF 1227 (2240)
Q Consensus 1149 k-s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPF 1227 (2240)
. ....+++||||-. +++.+...+.+
T Consensus 265 ~~~~~~i~~SAT~~~----~~~~~~~~~~~-------------------------------------------------- 290 (479)
T 3fmp_B 265 PRNCQMLLFSATFED----SVWKFAQKVVP-------------------------------------------------- 290 (479)
T ss_dssp CTTSEEEEEESCCCH----HHHHHHHHHSS--------------------------------------------------
T ss_pred CccceEEEEeCCCCH----HHHHHHHHHcC--------------------------------------------------
Confidence 3 3468999999832 22222221111
Q ss_pred HHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCC
Q 000099 1228 MLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNH 1307 (2240)
Q Consensus 1228 mLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNH 1307 (2240)
......+. ...... ..+. +.-..|+
T Consensus 291 --------------~~~~i~~~----~~~~~~-~~~~-----------------------------------~~~~~~~- 315 (479)
T 3fmp_B 291 --------------DPNVIKLK----REEETL-DTIK-----------------------------------QYYVLCS- 315 (479)
T ss_dssp --------------SEEEEEEC----------------------------------------------------------
T ss_pred --------------CCeEEecc----ccccCc-CCce-----------------------------------EEEEEeC-
Confidence 10000000 000000 0000 0000000
Q ss_pred CCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHH
Q 000099 1308 PLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAI 1387 (2240)
Q Consensus 1308 P~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaI 1387 (2240)
....|+..|..++... .+.++||||+....++.|...|...++.+..+||+++..+|..++
T Consensus 316 -----------------~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~ 376 (479)
T 3fmp_B 316 -----------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVI 376 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------CHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHH
Confidence 0011223333333321 346899999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCCh------hhHHHHhhhhhccCCcceEEEEE
Q 000099 1388 VDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNP------KNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1388 k~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP------~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+.|+.+..+ +||+|+++++|||++++++||+||+||++ ..|+|++||++|.|....+.+++
T Consensus 377 ~~f~~g~~~---iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~ 443 (479)
T 3fmp_B 377 ERFREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443 (479)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHcCCCc---EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 999976555 79999999999999999999999999876 69999999999999877766554
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-25 Score=286.57 Aligned_cols=307 Identities=18% Similarity=0.222 Sum_probs=208.9
Q ss_pred CCcHHHHHHHHHHHHhhcCC--CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--
Q 000099 1000 TLRDYQIVGLQWMLSLYNNK--LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~--lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-- 1074 (2240)
+|+++|.+++..++.-...+ .+.||+.+||+|||++++..+...+.. ...+|||||+. |..||..+|.+|++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 79999999999998755433 478999999999999998877766642 25799999986 67899999999986
Q ss_pred CCeEEEEecchhhH--hHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhc-cccc
Q 000099 1075 SVSCIYYVGAKDQR--SRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQ 1151 (2240)
Q Consensus 1075 slkVvvy~GskdeR--k~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~-Lks~ 1151 (2240)
++++.+++|+.... ...+ ..+..+..+|+|+|++.+... +...++++|||||+|++.... ...+.. ....
T Consensus 445 gi~v~~l~G~~~~~~r~~~~-~~l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~~~~ 517 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIK-SGLRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ---REALMNKGKMV 517 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHH-HHHHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSSSSCC
T ss_pred CceEEEEeCCCCHHHHHHHH-HHHhcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH---HHHHHHhCCCC
Confidence 57888888865432 2222 234456799999999988543 334578999999999984221 111221 2346
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
+.|+|||||+...+... .+ +..
T Consensus 518 ~vL~mSATp~p~tl~~~----~~------g~~------------------------------------------------ 539 (780)
T 1gm5_A 518 DTLVMSATPIPRSMALA----FY------GDL------------------------------------------------ 539 (780)
T ss_dssp CEEEEESSCCCHHHHHH----HT------CCS------------------------------------------------
T ss_pred CEEEEeCCCCHHHHHHH----Hh------CCc------------------------------------------------
Confidence 79999999965432211 00 000
Q ss_pred hhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLN 1311 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~ 1311 (2240)
...+...+|+....+...-.
T Consensus 540 -~~s~i~~~p~~r~~i~~~~~----------------------------------------------------------- 559 (780)
T 1gm5_A 540 -DVTVIDEMPPGRKEVQTMLV----------------------------------------------------------- 559 (780)
T ss_dssp -SCEEECCCCSSCCCCEECCC-----------------------------------------------------------
T ss_pred -ceeeeeccCCCCcceEEEEe-----------------------------------------------------------
Confidence 00001112221100000000
Q ss_pred CCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecch--------hHHHHHHHHHHh---cCceEEeecCCCCH
Q 000099 1312 YPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMT--------KLLDILEEYLQW---RQLVYRRIDGTTSL 1380 (2240)
Q Consensus 1312 ~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t--------~~LDiLed~L~~---rGiky~rLDGsTs~ 1380 (2240)
...+...+...+.+....+++++|||... ..++.+.+.|.. .++.+..+||.++.
T Consensus 560 --------------~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~ 625 (780)
T 1gm5_A 560 --------------PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQ 625 (780)
T ss_dssp --------------CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCC
T ss_pred --------------ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCH
Confidence 00011112223333345577788888754 346677777877 47889999999999
Q ss_pred HHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCC-ChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1381 EDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP-NPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1381 eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pW-NP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
++|..++++|++++.+ +||+|+++++|||++++++||+||+++ +...+.|++||++|.|+...|.+++
T Consensus 626 ~eR~~v~~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~ 694 (780)
T 1gm5_A 626 EEKDRVMLEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVV 694 (780)
T ss_dssp SCSHHHHHHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred HHHHHHHHHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEE
Confidence 9999999999976555 699999999999999999999999995 7899999999999999887776553
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=280.55 Aligned_cols=357 Identities=18% Similarity=0.109 Sum_probs=217.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Psl 1076 (2240)
+.+|+|||.+++.++.. +.+.|++.+||+|||+++...+...+. ..+++|||+|. .|..||..+|.++++
T Consensus 84 ~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 45799999999999876 678999999999999998766665553 23689999997 578899999999987
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhccc-cc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk-s~ 1151 (2240)
.+.+++|.... ....+|+|+|++.+..... .....+|++|||||+|++.+. ...+...+..+. ..
T Consensus 155 ~vglltGd~~~----------~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 DVGLMTGDITI----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp CEEEECSSCEE----------CTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred CEEEEeCCCcc----------CCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 56667775432 1256899999999875422 222347899999999999765 333344444554 45
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
+.|+||||+ . +..++...+..+. ..+....
T Consensus 225 ~il~LSATi-~-n~~e~a~~l~~~~--------------~~~~~vi---------------------------------- 254 (1010)
T 2xgj_A 225 RYVFLSATI-P-NAMEFAEWICKIH--------------SQPCHIV---------------------------------- 254 (1010)
T ss_dssp EEEEEECCC-T-THHHHHHHHHHHH--------------TSCEEEE----------------------------------
T ss_pred eEEEEcCCC-C-CHHHHHHHHHhhc--------------CCCeEEE----------------------------------
Confidence 689999995 2 2233322222110 0000000
Q ss_pred hhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHH-HcCCCCC
Q 000099 1232 RVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRK-TCNHPLL 1310 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRK-ICNHP~L 1310 (2240)
....-|....+.++..-.. .+| ..++.. ..+....+... +..+.. ....+.-
T Consensus 255 ----~~~~rp~pl~~~~~~~~~~---~~~--------~~~~~~---------~~~~~~~~~~~---~~~l~~~~~~~~~~ 307 (1010)
T 2xgj_A 255 ----YTNFRPTPLQHYLFPAHGD---GIY--------LVVDEK---------STFREENFQKA---MASISNQIGDDPNS 307 (1010)
T ss_dssp ----EECCCSSCEEEEEEETTSS---CCE--------EEECTT---------CCBCHHHHHHH---HHTCC---------
T ss_pred ----ecCCCcccceEEEEecCCc---cee--------eeeccc---------cccchHHHHHH---HHHHhhhhcccccc
Confidence 0000111111111110000 000 000000 00000000000 000000 0000000
Q ss_pred CCCCccccchhhHhhc-cc-HHHHHHHHHHHHHhc-CCeEEEEecchhHHHHHHHHHHhcCce-----------------
Q 000099 1311 NYPYFSDLSKDFLVKS-CG-KLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV----------------- 1370 (2240)
Q Consensus 1311 ~~p~~~~ls~d~Lirs-SG-KLelLdrIL~kL~at-GhKVLIFSQ~t~~LDiLed~L~~rGik----------------- 1370 (2240)
..+ ............ .+ ....+..++..+... +.++||||..+..++.+...|...++.
T Consensus 308 ~~~-~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 386 (1010)
T 2xgj_A 308 TDS-RGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIA 386 (1010)
T ss_dssp ----------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHT
T ss_pred ccc-ccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 000 000000000000 00 022344455555444 458999999999999999988765442
Q ss_pred ----------------------EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE----cCC
Q 000099 1371 ----------------------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YDP 1424 (2240)
Q Consensus 1371 ----------------------y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi----fD~ 1424 (2240)
+..+||+++..+|..+++.|+.+..+ +|++|+++++|||++++++||+ ||.
T Consensus 387 ~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~~kfd~ 463 (1010)
T 2xgj_A 387 LLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDG 463 (1010)
T ss_dssp TSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCSEEECS
T ss_pred hcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCCcccCC
Confidence 67799999999999999999976555 7999999999999999999999 999
Q ss_pred ----CCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1425 ----DPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1425 ----pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+|++..|.|++||++|.|+.....+|.++.
T Consensus 464 ~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~ 497 (1010)
T 2xgj_A 464 QQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 497 (1010)
T ss_dssp SCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEEC
T ss_pred cCCccCCHHHHhHhhhhcccCCCCCceEEEEEEC
Confidence 999999999999999999977777776654
|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-25 Score=267.15 Aligned_cols=202 Identities=14% Similarity=0.145 Sum_probs=153.9
Q ss_pred CCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccc-cccccccccCC----------CCCccccCCcccc
Q 000099 1728 NSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIA-VSGDSHMDHQQ----------SGSWTHDRDEGED 1795 (2240)
Q Consensus 1728 ~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya-~~~d~~~D~~~----------~~Sw~~~~~~~~d 1795 (2240)
+||.++++| .+|++..|||||.+|++||||++ |..+| ++|. ++.++..|+.+ +||+|+ ++
T Consensus 43 ~~r~~~~~F~~p~~~~~~PdY~~iIk~PmDL~t-I~~kl--~~y~~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~ 114 (311)
T 2r0y_A 43 KYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINE-IKSRD--YEYEDGPSNFLLDVELLTKNCQAYNEYDSLIV-----KN 114 (311)
T ss_dssp HSHHHHGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHSC--CCSTTHHHHHHHHHHHHHHHHHHHSCTTSHHH-----HH
T ss_pred cCCchhHHhcCCCCcccCCChHHHcCCCCCHHH-HHHHH--hcccCCHHHHHHHHHHHHHHHHHccCCCCHHH-----HH
Confidence 578999999 99999999999999999999999 99999 6666 89999999999 899888 55
Q ss_pred cccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCcc
Q 000099 1796 EQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSK 1875 (2240)
Q Consensus 1796 ~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 1875 (2240)
+..|+-.+.+ +|. +
T Consensus 115 A~~l~~~~~~-------------------------------------------------~~~-----------------k 128 (311)
T 2r0y_A 115 SMQVVMLIEF-------------------------------------------------EVL-----------------K 128 (311)
T ss_dssp HHHHHHHHHH-------------------------------------------------HHH-----------------H
T ss_pred HHHHHHHHHH-------------------------------------------------HHh-----------------h
Confidence 5544311111 000 0
Q ss_pred cccCCCccccCCCcccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHH----H
Q 000099 1876 SRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKL----Q 1951 (2240)
Q Consensus 1876 ~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kL----~ 1951 (2240)
. +.+ . + .. . . + +..| ..+++.|..|+... .
T Consensus 129 ~-k~~--------------~---~-~~-~----i------------------~--~~~k--~~l~~~~~~l~~~~~~~i~ 162 (311)
T 2r0y_A 129 A-KNL--------------K---R-NY-L----I------------------N--SEVK--AKLLHYLNKLVDATEKKIN 162 (311)
T ss_dssp H-HTG--------------G---G-CC-B----C------------------C--HHHH--HHHHHHHHHHHHCCHHHHH
T ss_pred c-ccC--------------C---C-CC-C----C------------------C--hHHH--HHHHHHHHHHHhhhHHHHH
Confidence 0 000 0 0 01 0 0 0 0000 12334455544211 1
Q ss_pred ----H-hh---ccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCC
Q 000099 1952 ----R-RI---EKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGF 2023 (2240)
Q Consensus 1952 ----~-~~---d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~ 2023 (2240)
+ +. ..+||.++++|+.+|++.++||||+| |++||||.+|++||++++|.++.+|+.||+|||.||+.||++
T Consensus 163 ~~l~~~r~~k~~~~~~~~s~~F~~pvd~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~ 241 (311)
T 2r0y_A 163 QALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEI-VHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDP 241 (311)
T ss_dssp HHHHGGGSCSSCCCSSCTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHhccccccccccCCccHHHHhCCCChhhcccHHHH-hCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 0 11 23578999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHh-CCCCh
Q 000099 2024 SHEVRSEARKVHDLFFDLLKIA-FPDTD 2050 (2240)
Q Consensus 2024 ~sev~~dA~~L~~~F~~~~k~~-fP~~~ 2050 (2240)
+|.||.+|..|+++|..+|+.. +|+..
T Consensus 242 ~s~i~~~A~~L~~~f~~~~~~~~~p~~~ 269 (311)
T 2r0y_A 242 SALIYKDATTLTNYFNYLIQKEFFPELQ 269 (311)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCcch
Confidence 9999999999999999999984 66443
|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-25 Score=268.62 Aligned_cols=216 Identities=13% Similarity=0.112 Sum_probs=159.9
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccc-cccccccccCC-------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIA-VSGDSHMDHQQ------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya-~~~d~~~D~~~------- 1782 (2240)
....+++.. ...+|.++.+| .+|++..|||||.+|++||||++ |..+| ++|. ++.++..|+.+
T Consensus 82 ~~~~~l~~l-----~~~~~~~~~~F~~p~~~~~~PdY~~iIk~Pmdl~t-I~~kl--~~y~~~~~~f~~D~~li~~Na~~ 153 (361)
T 2r10_A 82 FISFTLDVL-----IDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINE-IKSRD--YEYEDGPSNFLLDVELLTKNCQA 153 (361)
T ss_dssp HHHHHHHHH-----HHHTHHHHGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHTSC--CCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHcCCcccHHhcCCCCcccCCChHhhcCCCcCHHH-HHHHh--hccCCCHHHHHHHHHHHHHHHhh
Confidence 334455544 33678899999 99999999999999999999999 99998 5665 79999999999
Q ss_pred ---CCCccccCCcccccccccccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhh
Q 000099 1783 ---SGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAH 1859 (2240)
Q Consensus 1783 ---~~Sw~~~~~~~~d~~~~~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1859 (2240)
+||+|+ .++..|+-.+.+ +|.
T Consensus 154 yN~~~s~i~-----~~a~~l~~~~~~-------------------------------------------------~~~-- 177 (361)
T 2r10_A 154 YNEYDSLIV-----KNSMQVVMLIEF-------------------------------------------------EVL-- 177 (361)
T ss_dssp HBCSSSHHH-----HHHHHHHHHHHH-------------------------------------------------HHH--
T ss_pred cCCCCCHHH-----HHHHHHHHHHHH-------------------------------------------------HHh--
Confidence 899988 655544311111 000
Q ss_pred cCCccccCCCCCCCcccccCCCccccCCCcccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHH
Q 000099 1860 GESNSLRHDQSEPSSKSRRNLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVI 1939 (2240)
Q Consensus 1860 ~~~~~~~~~q~~~~~~~~r~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~m 1939 (2240)
+. ..+ +.. + .. + +. ....+
T Consensus 178 ---------------k~-k~~------------------~~~-~----~i------------------~--~~--~k~~l 196 (361)
T 2r10_A 178 ---------------KA-KNL------------------KRN-Y----LI------------------N--SE--VKAKL 196 (361)
T ss_dssp ---------------HH-HTT------------------TTC-C----BC------------------C--HH--HHHHH
T ss_pred ---------------hc-ccc------------------CCc-C----cC------------------C--HH--HHHHH
Confidence 00 000 000 1 00 0 00 01223
Q ss_pred HHHHHHHHHHHH----Hh--------hccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHH
Q 000099 1940 QRRCKNVISKLQ----RR--------IEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2007 (2240)
Q Consensus 1940 q~kck~vl~kL~----~~--------~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2007 (2240)
++.|..|++... .. ...+||.++++|+.+|++.++||||+| |++||||.+|..||+.++|.++++|+
T Consensus 197 ~~~~~~l~~~~~~~i~~~~~~~r~~~~~~~~~~~s~~F~~pvd~~~~PdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~ 275 (361)
T 2r10_A 197 LHYLNKLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEI-VHSPMALSIVKQNLEIGQYSKIYDFI 275 (361)
T ss_dssp HHHHHHHHHCCHHHHHHHHHGGGCCSSCCCSSCTTGGGSSCCCTTTCTHHHHH-CSSCCCHHHHHHHHHHTCCCBHHHHH
T ss_pred HHHHHHhhccchHHHHHHHhccccccccccCCcchhcccCCCChhhcccHHHH-hcCcccHHHHHHHHhcCCCCCHHHHH
Confidence 344555543211 00 023588999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHH-hCCCChhHH
Q 000099 2008 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKI-AFPDTDFRE 2053 (2240)
Q Consensus 2008 ~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~-~fP~~~f~~ 2053 (2240)
.||.|||.||+.||+++|.||.+|..|+++|..+|+. ++|+....+
T Consensus 276 ~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~p~~~~~~ 322 (361)
T 2r10_A 276 IDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEFFPELQDLN 322 (361)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcCCcchhhc
Confidence 9999999999999999999999999999999999997 466443333
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=262.91 Aligned_cols=324 Identities=15% Similarity=0.106 Sum_probs=210.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-slk 1077 (2240)
.|+|+|.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|.. ++.+|..++.++.+ ++.
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 7999999999863 23478899999999999999977665544322 36899999987 78889999966543 678
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCC--chhHHHHHhhccccceE
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRCQRR 1153 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN--~~SKlskaLk~Lks~~R 1153 (2240)
+..++|....... .....+|+|+|++.+...... ..-.++++|||||+|.+.+ ....+...+..+...+.
T Consensus 105 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~i 178 (715)
T 2va8_A 105 VAMTSGDYDTDDA------WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNL 178 (715)
T ss_dssp EEECCSCSSSCCG------GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEE
T ss_pred EEEEeCCCCCchh------hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcE
Confidence 8888886433221 123689999999988654221 1123679999999999864 22233344445567789
Q ss_pred EEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 000099 1154 LLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRRV 1233 (2240)
Q Consensus 1154 LLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRlK 1233 (2240)
++||||+- +..+ |.+||..+.....
T Consensus 179 i~lSATl~--n~~~------------------~~~~l~~~~~~~~----------------------------------- 203 (715)
T 2va8_A 179 LALSATIS--NYKQ------------------IAKWLGAEPVATN----------------------------------- 203 (715)
T ss_dssp EEEESCCT--THHH------------------HHHHHTCEEEECC-----------------------------------
T ss_pred EEEcCCCC--CHHH------------------HHHHhCCCccCCC-----------------------------------
Confidence 99999973 2333 3333332110000
Q ss_pred hhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 000099 1234 EDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYP 1313 (2240)
Q Consensus 1234 kDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p 1313 (2240)
.-|-.....+...-... ....+ .+.
T Consensus 204 -----~r~~~l~~~~~~~~~~~-----------~~~~~---------------------------------------~~~ 228 (715)
T 2va8_A 204 -----WRPVPLIEGVIYPERKK-----------KEYNV---------------------------------------IFK 228 (715)
T ss_dssp -----CCSSCEEEEEEEECSST-----------TEEEE---------------------------------------EET
T ss_pred -----CCCCCceEEEEecCCcc-----------cceee---------------------------------------ecC
Confidence 00101111111000000 00000 000
Q ss_pred CccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcC-------------------------
Q 000099 1314 YFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQ------------------------- 1368 (2240)
Q Consensus 1314 ~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rG------------------------- 1368 (2240)
. .....+.....++. ++.++...++++||||.....++.+...|....
T Consensus 229 ~---~~~~~~~~~~~~~~----~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 229 D---NTTKKVHGDDAIIA----YTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp T---SCEEEEESSSHHHH----HHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred c---chhhhcccchHHHH----HHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 0 00000000011222 223333568899999999999999988887542
Q ss_pred -----------ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE----cC-------CCC
Q 000099 1369 -----------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD-------PDP 1426 (2240)
Q Consensus 1369 -----------iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi----fD-------~pW 1426 (2240)
..+..+||+++.++|..+++.|.++... +|++|.++++|||++++++||. || .++
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~ 378 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC
Confidence 2478899999999999999999975544 7999999999999999999999 99 899
Q ss_pred ChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1427 NPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1427 NP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
++..+.|+.|||+|.|+.+.-.+|.+.+
T Consensus 379 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 406 (715)
T 2va8_A 379 PIMEYKQMSGRAGRPGFDQIGESIVVVR 406 (715)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEECS
T ss_pred CHHHHHHHhhhcCCCCCCCCceEEEEeC
Confidence 9999999999999999887777777765
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-23 Score=266.12 Aligned_cols=315 Identities=16% Similarity=0.123 Sum_probs=211.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC-CCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP-SVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P-slk 1077 (2240)
+|+|||.+++..+.. +.+.|++.+||+|||+++...+...+. ..+.+|||+|.. ++.+|..++.+|.+ +++
T Consensus 25 ~l~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~~l~il~~~~---~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEcCCccHHHHHHHHHHHHHHH---hCCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 799999999988553 788999999999999999766665543 246899999987 78899999976654 578
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCC--chhHHHHHhhcc----c
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRY----R 1149 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN--~~SKlskaLk~L----k 1149 (2240)
+..++|....... .....+|+|+|++.+...... ....++++|||||+|.+.+ ....+...+..+ .
T Consensus 98 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (702)
T 2p6r_A 98 IGISTGDYESRDE------HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (702)
T ss_dssp EEEECSSCBCCSS------CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred EEEEeCCCCcchh------hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc
Confidence 8888886543221 124789999999988654221 1123678999999999875 222233333333 3
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHH
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFML 1229 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmL 1229 (2240)
..+.++||||+- +..+ |.+||..+.....
T Consensus 172 ~~~ii~lSATl~--n~~~------------------~~~~l~~~~~~~~------------------------------- 200 (702)
T 2p6r_A 172 ALRVIGLSATAP--NVTE------------------IAEWLDADYYVSD------------------------------- 200 (702)
T ss_dssp TCEEEEEECCCT--THHH------------------HHHHTTCEEEECC-------------------------------
T ss_pred CceEEEECCCcC--CHHH------------------HHHHhCCCcccCC-------------------------------
Confidence 467899999962 2333 3333332111000
Q ss_pred HhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCC
Q 000099 1230 RRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPL 1309 (2240)
Q Consensus 1230 RRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~ 1309 (2240)
.-|-..+..+...- ....... . . .
T Consensus 201 ---------~r~~~l~~~~~~~~---------------~~~~~~~-~-~---~--------------------------- 224 (702)
T 2p6r_A 201 ---------WRPVPLVEGVLCEG---------------TLELFDG-A-F---S--------------------------- 224 (702)
T ss_dssp ---------CCSSCEEEEEECSS---------------EEEEEET-T-E---E---------------------------
T ss_pred ---------CCCccceEEEeeCC---------------eeeccCc-c-h---h---------------------------
Confidence 00111111111000 0000000 0 0 0
Q ss_pred CCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc----------------------
Q 000099 1310 LNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR---------------------- 1367 (2240)
Q Consensus 1310 L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r---------------------- 1367 (2240)
.. ..-.+... +.++...++++||||..+..++.+...|...
T Consensus 225 ----~~---------~~~~~~~~----~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~ 287 (702)
T 2p6r_A 225 ----TS---------RRVKFEEL----VEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEM 287 (702)
T ss_dssp ----EE---------EECCHHHH----HHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHH
T ss_pred ----hh---------hhhhHHHH----HHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccc
Confidence 00 00002222 2233346889999999999998888887643
Q ss_pred --------CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE----cC---CCCChhhHH
Q 000099 1368 --------QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD---PDPNPKNEE 1432 (2240)
Q Consensus 1368 --------Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi----fD---~pWNP~~d~ 1432 (2240)
++.+..+||+++.++|..+++.|.++..+ +|++|+++++|||++++++||. || .++++..+.
T Consensus 288 ~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~ 364 (702)
T 2p6r_A 288 SRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYK 364 (702)
T ss_dssp HHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHH
T ss_pred cHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHH
Confidence 12456699999999999999999976544 7999999999999999999999 77 789999999
Q ss_pred HHhhhhhccCCcceEEEEEEeh
Q 000099 1433 QAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1433 QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
|++|||+|.|+.+...+|.+.+
T Consensus 365 Qr~GRaGR~g~~~~G~~~~l~~ 386 (702)
T 2p6r_A 365 QMAGRAGRPGMDERGEAIIIVG 386 (702)
T ss_dssp HHHTTBSCTTTCSCEEEEEECC
T ss_pred HHhhhcCCCCCCCCceEEEEec
Confidence 9999999999888877777765
|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=219.85 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=110.9
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHH
Q 000099 1929 SNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2008 (2240)
Q Consensus 1929 ~~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2008 (2240)
...+.+.++.++++|+.||+.|.+.+|..||.++++|+.+|++.++||||++ |++||||.+|++||+.++|.++++|..
T Consensus 4 ~~~~~~~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~ 82 (123)
T 2dat_A 4 GSSGSPNPPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLGDLEK 82 (123)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTTSCHHHHH-CSSCCCHHHHHHHHTTTCCCSHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhCCCCCCHHHHHH
Confidence 3455678899999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2009 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2009 DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||+|||+||+.||+++|.||.+|..|+++|..+++..
T Consensus 83 D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~ 119 (123)
T 2dat_A 83 DVMLLCHNAQTFNLEGSQIYEDSIVLQSVFKSARQSG 119 (123)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999998854
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=273.08 Aligned_cols=348 Identities=16% Similarity=0.067 Sum_probs=213.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Pslk 1077 (2240)
.+|+|||.+++..+.. +.+.|++.+||+|||++++..|...+. ..+.+|||+|.. |..||..+|.+++. .
T Consensus 183 f~ltp~Q~~AI~~i~~----g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~~--~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG--D 253 (1108)
T ss_dssp SCCCHHHHHHHHHHTT----TCCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHTS--S
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcCcHHHHHHHHHHHHHHhC--C
Confidence 4799999999988754 788999999999999998877766653 345899999976 77889999999987 4
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCch--hHHHHHhhccc-cce
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-CQR 1152 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lk-s~~ 1152 (2240)
+.+++|.... ....+|+|+|++.+...... ....++.+|||||||++.+.. ..+...+..+. ..+
T Consensus 254 VglltGd~~~----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~q 323 (1108)
T 3l9o_A 254 VGLMTGDITI----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 323 (1108)
T ss_dssp EEEECSSCBC----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSE
T ss_pred ccEEeCcccc----------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCce
Confidence 5566675432 24579999999988764321 112368899999999997642 23333444444 456
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
.|+||||. .|. .++..++..+... |.....
T Consensus 324 vl~lSATi-pn~-~e~a~~l~~~~~~--------------~~~vi~---------------------------------- 353 (1108)
T 3l9o_A 324 YVFLSATI-PNA-MEFAEWICKIHSQ--------------PCHIVY---------------------------------- 353 (1108)
T ss_dssp EEEEECSC-SSC-HHHHHHHHHHTCS--------------CEEEEE----------------------------------
T ss_pred EEEEcCCC-CCH-HHHHHHHHhhcCC--------------CeEEEe----------------------------------
Confidence 89999993 333 3333333222110 000000
Q ss_pred hhhhccCCCCceEEEEEe-----------ccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHH
Q 000099 1233 VEDVEGSLPPKVSIVLRC-----------RMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMEL 1301 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c-----------~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqL 1301 (2240)
...-|....+.++. .........|........... .. ... .. ... ..
T Consensus 354 ----~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~----~~-----~~~----~~-~~~----~~ 411 (1108)
T 3l9o_A 354 ----TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQI----GD-----DPN----ST-DSR----GK 411 (1108)
T ss_dssp ----ECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC----------------------------------
T ss_pred ----cCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhh----cc-----ccc----cc-ccc----cc
Confidence 00001111111110 001111111111111000000 00 000 00 000 00
Q ss_pred HHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhc-CCeEEEEecchhHHHHHHHHHHhcCce----------
Q 000099 1302 RKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRT-GHRVLLFSTMTKLLDILEEYLQWRQLV---------- 1370 (2240)
Q Consensus 1302 RKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~at-GhKVLIFSQ~t~~LDiLed~L~~rGik---------- 1370 (2240)
+... + . .. .........+..++..+... +.++||||.....++.+...|...++.
T Consensus 412 ~~~~-----~---~---~~---~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 412 KGQT-----Y---K---GG---SAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred cccc-----c---c---cc---cccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 0000 0 0 00 00000123344455555443 469999999999999999988654333
Q ss_pred -----------------------------EEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE
Q 000099 1371 -----------------------------YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421 (2240)
Q Consensus 1371 -----------------------------y~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi 1421 (2240)
+..+||+++..+|..+++.|..+..+ +|++|+++++|||++++++||+
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~ 554 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFT 554 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEES
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEe
Confidence 67899999999999999999986665 7999999999999999999999
Q ss_pred cCCCCChhh--------HHHHhhhhhccCCcceEEEEEEeh
Q 000099 1422 YDPDPNPKN--------EEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1422 fD~pWNP~~--------d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
++.+|++.. |+|++||++|.|......+|.+..
T Consensus 555 ~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~ 595 (1108)
T 3l9o_A 555 SVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMID 595 (1108)
T ss_dssp CSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEEC
T ss_pred cCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Confidence 998886654 999999999999877777776644
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=260.90 Aligned_cols=315 Identities=15% Similarity=0.104 Sum_probs=210.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC-CCe
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP-SVS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~P-slk 1077 (2240)
.|+|||.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|. .++.+|..++.+|.+ +++
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~~ 97 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGLR 97 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCCE
Confidence 7999999999752 22377899999999999999855554433222 3689999997 578899999976654 678
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCC--chhHHHHHhhccc-cce
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQR 1152 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN--~~SKlskaLk~Lk-s~~ 1152 (2240)
+..++|......+ .....+|+|+|++.+...... ....++++|||||+|.+.. ....+...+..++ ..+
T Consensus 98 v~~~~G~~~~~~~------~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (720)
T 2zj8_A 98 VAMATGDYDSKDE------WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ 171 (720)
T ss_dssp EEEECSCSSCCCG------GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBE
T ss_pred EEEecCCCCcccc------ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCe
Confidence 8888885433221 124689999999988654221 1123678999999999875 2233333444444 567
Q ss_pred EEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHhh
Q 000099 1153 RLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRRR 1232 (2240)
Q Consensus 1153 RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRRl 1232 (2240)
.|+||||+- +..+ |.+||..+....
T Consensus 172 ii~lSATl~--n~~~------------------~~~~l~~~~~~~----------------------------------- 196 (720)
T 2zj8_A 172 IIGLSATIG--NPEE------------------LAEWLNAELIVS----------------------------------- 196 (720)
T ss_dssp EEEEECCCS--CHHH------------------HHHHTTEEEEEC-----------------------------------
T ss_pred EEEEcCCcC--CHHH------------------HHHHhCCcccCC-----------------------------------
Confidence 899999962 2333 333332111000
Q ss_pred hhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000099 1233 VEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (2240)
Q Consensus 1233 KkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~ 1312 (2240)
..-|-.....+...- .+.... ..
T Consensus 197 -----~~rp~~l~~~~~~~~---------------~~~~~~--------~~----------------------------- 219 (720)
T 2zj8_A 197 -----DWRPVKLRRGVFYQG---------------FVTWED--------GS----------------------------- 219 (720)
T ss_dssp -----CCCSSEEEEEEEETT---------------EEEETT--------SC-----------------------------
T ss_pred -----CCCCCcceEEEEeCC---------------eeeccc--------cc-----------------------------
Confidence 000111111111000 000000 00
Q ss_pred CCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc------------------C------
Q 000099 1313 PYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR------------------Q------ 1368 (2240)
Q Consensus 1313 p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r------------------G------ 1368 (2240)
. . ....++..+ .++...++++||||..+..++.+...|... +
T Consensus 220 --~-~-------~~~~~~~~~----~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 285 (720)
T 2zj8_A 220 --I-D-------RFSSWEELV----YDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPT 285 (720)
T ss_dssp --E-E-------ECSSTTHHH----HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHH
T ss_pred --h-h-------hhhHHHHHH----HHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccc
Confidence 0 0 001112222 223346789999999999998888888643 1
Q ss_pred ---------ceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE----cC----CCCChhhH
Q 000099 1369 ---------LVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII----YD----PDPNPKNE 1431 (2240)
Q Consensus 1369 ---------iky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi----fD----~pWNP~~d 1431 (2240)
..+..+||+++.++|..+++.|.++..+ +|++|.++++|||++++++||. || .|+++..+
T Consensus 286 ~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~ 362 (720)
T 2zj8_A 286 NEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEV 362 (720)
T ss_dssp HHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHH
T ss_pred hHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHH
Confidence 2378899999999999999999975544 7999999999999999999998 88 68999999
Q ss_pred HHHhhhhhccCCcceEEEEEEeh
Q 000099 1432 EQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1432 ~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
.|++|||+|.|+.+.-.+|.+.+
T Consensus 363 ~Qr~GRaGR~g~~~~G~~~~l~~ 385 (720)
T 2zj8_A 363 HQMLGRAGRPKYDEVGEGIIVST 385 (720)
T ss_dssp HHHHTTBCCTTTCSEEEEEEECS
T ss_pred HHHHhhcCCCCCCCCceEEEEec
Confidence 99999999999887777777755
|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-24 Score=249.07 Aligned_cols=199 Identities=12% Similarity=0.107 Sum_probs=151.4
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+|+...|||||.+|++||||++ |..+|+.|.|.++.++..|+.+ ++|+++ ..+..|
T Consensus 30 ~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~l 103 (265)
T 3uv5_A 30 PNTYPFHTPVNAKVVKDYYKIITRPMDLQT-LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT-----QISQSM 103 (265)
T ss_dssp TTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH-----HHHHHH
T ss_pred CCchhhhCCCChhhcCCHHHHhCCCCcHHH-HHHHHHcCCCCCHHHHHHHHHHHHhhhhhcCCCCChHH-----HHHHHH
Confidence 357889 89999999999999999999999 9999999999999999999998 778777 443332
Q ss_pred cccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCcccccC
Q 000099 1800 QPKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRRN 1879 (2240)
Q Consensus 1800 ~~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~r~ 1879 (2240)
+-...+ .|..+.
T Consensus 104 ~~~~~~-------------------------------------------------~~~~~~------------------- 115 (265)
T 3uv5_A 104 LDLCDE-------------------------------------------------KLKEKE------------------- 115 (265)
T ss_dssp HHHHHH-------------------------------------------------HHHHTH-------------------
T ss_pred HHHHHH-------------------------------------------------HHHHHh-------------------
Confidence 211000 000000
Q ss_pred CCccccCCCcccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHHHHHhhccCCC
Q 000099 1880 LPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGH 1959 (2240)
Q Consensus 1880 lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr 1959 (2240)
+...... +.++..... .-+..|..++..+... .-..+
T Consensus 116 ----------------------------~~~~~~e------k~i~p~~dd--------~~~~~~~~il~~i~~~-~l~~~ 152 (265)
T 3uv5_A 116 ----------------------------DKLARLE------KAINPLLDD--------DDQVAFSFILDNIVTQ-KMMAV 152 (265)
T ss_dssp ----------------------------HHHHHHH------HHHSTTTTC--------HHHHHHHHHHHHHHHH-TTTTS
T ss_pred ----------------------------hhhhhhh------hhhhhcccc--------chhhHHHHHHHHHHHH-HHHhh
Confidence 0001111 222322111 1133355555443221 12357
Q ss_pred cchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHH
Q 000099 1960 QIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFF 2039 (2240)
Q Consensus 1960 ~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~ 2039 (2240)
..+++|+.+|++..+||||++ |++||||.+|..||+.+.|.++.+|..||.|||+||+.||+++|.||.+|..|+++|.
T Consensus 153 ~~~~~F~~pv~~~~~pdY~~i-Ik~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~~~s~~~~~A~~l~~~~~ 231 (265)
T 3uv5_A 153 PDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCY 231 (265)
T ss_dssp TTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHhCCCChhHhCcHHHH-hCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC
Q 000099 2040 DLLKIAFP 2047 (2240)
Q Consensus 2040 ~~~k~~fP 2047 (2240)
+.|+.+-.
T Consensus 232 ~~~~~~~~ 239 (265)
T 3uv5_A 232 QTLTEYDE 239 (265)
T ss_dssp HHHHHTHH
T ss_pred HHHHHHHH
Confidence 99987643
|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-23 Score=217.34 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=110.0
Q ss_pred ccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHH
Q 000099 1929 SNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2008 (2240)
Q Consensus 1929 ~~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2008 (2240)
.....|+...++++|++||+.|.+.+|.+||.++++|+.+|.+.++||||++ |++||||.+|.+||+.++|.++.+|+.
T Consensus 6 ~~k~~k~~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~ 84 (124)
T 3mb4_A 6 SPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYLT-IKKPMDMEKIRSHMMANKYQDIDSMVE 84 (124)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHH
T ss_pred CCCccccChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccccCCHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHHH
Confidence 3345588889999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2009 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2009 DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
||+|||.||+.||+++|.+|.+|..|+++|..+++...
T Consensus 85 D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 85 DFVMMFNNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998764
|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-23 Score=215.42 Aligned_cols=113 Identities=21% Similarity=0.292 Sum_probs=108.0
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2014 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf 2014 (2240)
|+....++|++|++.|.+.+|++||.++++|+.+|++.++||||++ |++||||.+|++||+.++|.++.+|..||+|||
T Consensus 2 m~~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 80 (116)
T 3iu5_A 2 MTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEV-VSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF 80 (116)
T ss_dssp CSCCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGGCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCcccCCCHHHH-hCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4455667999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000099 2015 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 2048 (2240)
Q Consensus 2015 ~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~ 2048 (2240)
.||+.||+++|+||.+|..|+++|..+++..+..
T Consensus 81 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~~~ 114 (116)
T 3iu5_A 81 NNAKSYYKPDSPEYKAACKLWDLYLRTRNEFVQK 114 (116)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988763
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=263.51 Aligned_cols=375 Identities=17% Similarity=0.116 Sum_probs=217.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Psl 1076 (2240)
+.+|+|||.+++..++. +.+.|++.+||+|||++++..|..+.. ..+.+|||+|.. |+.||..+|.++++++
T Consensus 37 ~f~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~~~ 109 (997)
T 4a4z_A 37 PFELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFDDV 109 (997)
T ss_dssp SSCCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC--C
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999987765 678999999999999987766665543 235799999965 7899999999999888
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhccc-cc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk-s~ 1151 (2240)
.+..++|.... ....+|+|+|++.+..... .+...++++|||||||++.+. ...+...+..+. ..
T Consensus 110 ~v~~l~G~~~~----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 110 NIGLITGDVQI----------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp CEEEECSSCEE----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred eEEEEeCCCcc----------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 99998886532 2357999999999976532 222346899999999998663 334555555564 35
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHHh
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLRR 1231 (2240)
..|+|||||- +.. .|.+|+....... . +++
T Consensus 180 ~iIlLSAT~~--n~~------------------ef~~~l~~~~~~~--~--------------------------~vi-- 209 (997)
T 4a4z_A 180 KFILLSATVP--NTY------------------EFANWIGRTKQKN--I--------------------------YVI-- 209 (997)
T ss_dssp EEEEEECCCT--THH------------------HHHHHHHHHHTCC--E--------------------------EEE--
T ss_pred CEEEEcCCCC--ChH------------------HHHHHHhcccCCc--e--------------------------EEE--
Confidence 6899999972 222 3334432100000 0 000
Q ss_pred hhhhhccCCCCceEEEEEe---------ccCHHHHHHHHHHHHc----cCcccCchh--HHhhhhcChhhH---HHHH--
Q 000099 1232 RVEDVEGSLPPKVSIVLRC---------RMSAIQSAIYDWIKAT----GTLRVDPED--EKRRVQKNPIYQ---AKVY-- 1291 (2240)
Q Consensus 1232 lKkDVekdLP~KvE~vV~c---------~LS~~Qr~LYk~L~~~----~~l~ld~~~--e~~~l~~~~~~~---ak~~-- 1291 (2240)
.....|...++.++. .........|...... ......... ............ .+..
T Consensus 210 ----~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~ 285 (997)
T 4a4z_A 210 ----STPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRG 285 (997)
T ss_dssp ----ECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC----------------------------------
T ss_pred ----ecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccccccccccccc
Confidence 000011111111110 0000011111111000 000000000 000000000000 0000
Q ss_pred -HHHHHHHHHHHHHcCCCCCCCCCccccchhhHh---hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc
Q 000099 1292 -KTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLV---KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (2240)
Q Consensus 1292 -~sL~nilmqLRKICNHP~L~~p~~~~ls~d~Li---rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r 1367 (2240)
..-...-..-+..+..+.. .......+.. ....++..|..+|.. ....++||||.....++.+..+|...
T Consensus 286 ~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~ 359 (997)
T 4a4z_A 286 GRGNSTRGGANRGGSRGAGA----IGSNKRKFFTQDGPSKKTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGI 359 (997)
T ss_dssp -----------------------------------CCCCTTHHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTC
T ss_pred cccccccccccccccccccc----ccccccccccccccchhHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcC
Confidence 0000000000000000000 0000000000 112234444444432 24579999999999999999999776
Q ss_pred Cc---------------------------------------eEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000099 1368 QL---------------------------------------VYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (2240)
Q Consensus 1368 Gi---------------------------------------ky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGG 1408 (2240)
++ .+..+||+++..+|..+++.|..+..+ +|++|.+++
T Consensus 360 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a 436 (997)
T 4a4z_A 360 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFA 436 (997)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhh
Confidence 55 468899999999999999999986655 799999999
Q ss_pred ccCCCCCCCeEEEcCCCC---------ChhhHHHHhhhhhccCCcceEEEEEEe
Q 000099 1409 RGLNLQSADTVIIYDPDP---------NPKNEEQAVARAHRIGQKREVKVIYME 1453 (2240)
Q Consensus 1409 eGLNLQaADtVIifD~pW---------NP~~d~QAiGRAhRIGQKKeV~VyrLv 1453 (2240)
+|||+++ .+||+++.++ ++..|.|++|||+|.|......+|.+.
T Consensus 437 ~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 437 MGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp HSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 9999999 7777766665 999999999999999988887777664
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=263.29 Aligned_cols=155 Identities=19% Similarity=0.229 Sum_probs=108.8
Q ss_pred CCcHHHHHHHHHHHHhhc----------CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYN----------NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSE 1068 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~----------n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~E 1068 (2240)
.|||||..++.+++..+. .+.+||+++.||+|||++++.++ .++...+...++|||||. .|..||..+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 699999999999987543 23679999999999999986665 444333444689999995 588999999
Q ss_pred HHHHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---c-cccCcceEecccccccCCchhHHHHH
Q 000099 1069 LHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---L-SKVDWKYIIIDEAQRMKDRESVLARD 1144 (2240)
Q Consensus 1069 f~Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L-~kikWd~VIIDEAHrLKN~~SKlska 1144 (2240)
|.+|.+.. ++ +... ...+ .........+|+|||++.|...... + ....+.+||||||||+.. ...++.
T Consensus 350 f~~f~~~~---v~-~~~s-~~~l-~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~~~~~~ 421 (1038)
T 2w00_A 350 YQRFSPDS---VN-GSEN-TAGL-KRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--GEAQKN 421 (1038)
T ss_dssp HHTTSTTC---SS-SSCC-CHHH-HHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--HHHHHH
T ss_pred HHHhcccc---cc-cccC-HHHH-HHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--hHHHHH
Confidence 99998652 11 2111 1111 1122235689999999999864321 1 122689999999999853 223334
Q ss_pred h-hccccceEEEeecCCCCC
Q 000099 1145 L-DRYRCQRRLLLTGTPLQN 1163 (2240)
Q Consensus 1145 L-k~Lks~~RLLLTGTPLQN 1163 (2240)
| ..+....+|+|||||...
T Consensus 422 I~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 422 LKKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHCSSEEEEEEESSCCCS
T ss_pred HHHhCCcccEEEEeCCcccc
Confidence 4 456667899999999864
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-21 Score=264.01 Aligned_cols=277 Identities=15% Similarity=0.222 Sum_probs=190.9
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-CC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-PS 1075 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~-Ps 1075 (2240)
+.+++|+|..++..++. +.+.|++.+||+|||+.++.++..++ ...+.+|||+|+. |+.||...|.++. .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 34799999999988775 67899999999999997666655554 3446799999976 7788999999976 45
Q ss_pred CeEEEEecchhh--HhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCch-------------hH
Q 000099 1076 VSCIYYVGAKDQ--RSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRE-------------SV 1140 (2240)
Q Consensus 1076 lkVvvy~Gskde--Rk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~-------------SK 1140 (2240)
+++..++|+... +...+ ..+..+.++|+|+|++.+.+....+...++++|||||||++.... ..
T Consensus 149 i~v~~l~Gg~~~~er~~~~-~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~ 227 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFE-KSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEE 227 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHH-HHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHH
T ss_pred CeEEEEeCCCCHHHHHHHH-HHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHH
Confidence 788888887643 21211 234445689999999999877666666689999999999864311 11
Q ss_pred -HHHHhhcc------------ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhh
Q 000099 1141 -LARDLDRY------------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDW 1207 (2240)
Q Consensus 1141 -lskaLk~L------------ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~ 1207 (2240)
+...+..+ .....+++||||....+.+.+ +...+...+..
T Consensus 228 ~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~----------------~~~~l~i~v~~----------- 280 (1104)
T 4ddu_A 228 IIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLL----------------FRDLLNFTVGR----------- 280 (1104)
T ss_dssp HHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHH----------------HHHHTCCCCCB-----------
T ss_pred HHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHH----------------hhcceeEEecc-----------
Confidence 22333333 234689999997555432211 00000000000
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhhhhhccCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhH
Q 000099 1208 LETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQ 1287 (2240)
Q Consensus 1208 l~~Ee~~lii~RLhklLrPFmLRRlKkDVekdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ 1287 (2240)
.....+......+.
T Consensus 281 ----------------------------~~~~~~~i~~~~~~-------------------------------------- 294 (1104)
T 4ddu_A 281 ----------------------------LVSVARNITHVRIS-------------------------------------- 294 (1104)
T ss_dssp ----------------------------CCCCCCCEEEEEES--------------------------------------
T ss_pred ----------------------------CCCCcCCceeEEEe--------------------------------------
Confidence 00000000001100
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc
Q 000099 1288 AKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1367 (2240)
Q Consensus 1288 ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r 1367 (2240)
+.|...|..+|.. .+.++||||+.+..++.|..+|...
T Consensus 295 ---------------------------------------~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~ 332 (1104)
T 4ddu_A 295 ---------------------------------------SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRF 332 (1104)
T ss_dssp ---------------------------------------CCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHT
T ss_pred ---------------------------------------cCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhC
Confidence 1233344444444 3589999999999999999999999
Q ss_pred CceEE-eecCCCCHHHHHHHHHHHhcCCCCccEEEEe----cccccccCCCCC-CCeEEEcCCCC
Q 000099 1368 QLVYR-RIDGTTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQS-ADTVIIYDPDP 1426 (2240)
Q Consensus 1368 Giky~-rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLS----TrAGGeGLNLQa-ADtVIifD~pW 1426 (2240)
|+.+. .+|| +|.+ +++|+++..+ +||+ |+++++|||+++ +++||+||+|-
T Consensus 333 g~~~~~~lhg-----~rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 333 KFNVGETWSE-----FEKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TCCEEESSSS-----HHHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCeeeEecC-----cHHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 99998 9999 3555 9999986655 6777 999999999999 99999999998
|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-23 Score=214.30 Aligned_cols=111 Identities=14% Similarity=0.228 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2015 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~ 2015 (2240)
+..++++|+++++.|.+.+|++||.++++|+.+|++.++||||++ |++||||.+|.+||+.++|.++.+|..||+|||+
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 85 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKKNADYYEK-ISDPLDLITIEKQILTGYYKTVEAFDADMLKVFR 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGGCTTHHHH-CSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2016 GAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2016 Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
||+.||+++|.+|.+|..|+++|..+++.+.|
T Consensus 86 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 117 (126)
T 3mqm_A 86 NAEKYYGRKSPVGRDVCRLRKAYYNARHEASA 117 (126)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876
|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=211.39 Aligned_cols=108 Identities=16% Similarity=0.292 Sum_probs=105.8
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2015 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~ 2015 (2240)
++.+++.|+.+++.|.+.+|.+||.++++|+.+|++.++||||++ |++||||.+|..||+.+.|.++.+|+.||.|||.
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~ 84 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQYPDYYAI-IKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAK 84 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2016 GAMQFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2016 Na~~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
||+.||+++|.||.+|..|+++|..+++.
T Consensus 85 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~ 113 (120)
T 3ljw_A 85 NAKTYNEPGSQVFKDANSIKKIFYMKKAE 113 (120)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999886
|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-23 Score=243.27 Aligned_cols=196 Identities=12% Similarity=0.142 Sum_probs=148.7
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+|+...|||||.+|++||||++ |..+|+.|+|.+..++..|+.+ ++|+++ ..+..|
T Consensus 63 ~~a~~F~~pV~~~~~pdY~~iIk~PmDL~t-Ik~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~L 136 (292)
T 3aad_A 63 PNTYPFHTPVNAKVVKDYYKIITRPMDLQT-LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT-----QISQSM 136 (292)
T ss_dssp TTCGGGSSSCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCSSSHHH-----HHHTHH
T ss_pred CcchhhcCCCCchhcccHHHHcCCcCCHHH-HHHHhhCCCcCCHHHHHHHHHHHHHHHHHHcCCchHHH-----HHHHHH
Confidence 457889 88999999999999999999999 9999999999999999999998 888888 555554
Q ss_pred c-ccccccccccccCCCCcCCCccccCCCCCCCCCCCCCCccccCCCccccccCchhhhhhcCCccccCCCCCCCccccc
Q 000099 1800 Q-PKIKRKRSIRVRPRHTVERPEERSCTDTPLHRGDSSLLPFQMDNKYPAQLRTDTEMKAHGESNSLRHDQSEPSSKSRR 1878 (2240)
Q Consensus 1800 ~-~~~~rkr~~~~rp~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~r 1878 (2240)
. -+.++-..++. ... +...
T Consensus 137 ~~~~~~~~~~~~~-------------------------------------------~~~-----------------~~e~ 156 (292)
T 3aad_A 137 LDLCDEKLKEKED-------------------------------------------KLA-----------------RLEK 156 (292)
T ss_dssp HHTTTTTGGGSHH-------------------------------------------HHH-----------------HHHH
T ss_pred HHHHHhhhhcchh-------------------------------------------hhh-----------------hhhh
Confidence 4 11111100000 000 0000
Q ss_pred CCCccccCCCcccccccccCCCCCCCCCccccccccccccccccccCCCCccccccCcHHHHHHHHHHHHH-HHHhhccC
Q 000099 1879 NLPSRKIANAPKSRASLKTGRLNCMPGHTEDAADHFKESWDGKIANASGSSNFSAKMSDVIQRRCKNVISK-LQRRIEKE 1957 (2240)
Q Consensus 1879 ~lpsrki~~~~~l~~~~k~~~~~~~~~~~e~~~d~~~~~~~~k~~n~~gs~~~~~kl~~~mq~kck~vl~k-L~~~~d~~ 1957 (2240)
.+ +|. . .+ ++ . -.+...|++++.. | .
T Consensus 157 ~i------~Pl----------------~-dd-~~-------------------~----~~~~~~l~~i~~~~l------~ 183 (292)
T 3aad_A 157 AI------NPL----------------L-DD-DD-------------------Q----VAFSFILDNIVTQKM------M 183 (292)
T ss_dssp TT------SSS----------------T-TC-HH-------------------H----HHHHHHHHHHHHHTG------G
T ss_pred cc------ccc----------------c-cc-ch-------------------h----HHHHHHHHHHhhhhh------h
Confidence 00 000 0 00 00 0 0122234444422 2 2
Q ss_pred CCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHH
Q 000099 1958 GHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDL 2037 (2240)
Q Consensus 1958 Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~yn~~~sev~~dA~~L~~~ 2037 (2240)
.+..+++|+.+|++.++||||++ |++||||.+|..||+.++|.++++|..||.|||+||+.||+++|.+|.+|..|+++
T Consensus 184 ~~~~s~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~i~~~A~~L~~~ 262 (292)
T 3aad_A 184 AVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNV 262 (292)
T ss_dssp GSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred cCcchhHHHhcccccccccHHHH-cCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 000099 2038 FFDLLKIAF 2046 (2240)
Q Consensus 2038 F~~~~k~~f 2046 (2240)
|.+.++.+-
T Consensus 263 ~~~~~~~~~ 271 (292)
T 3aad_A 263 CYQTLTEYD 271 (292)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-22 Score=207.82 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=107.4
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2012 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqL 2012 (2240)
..-.+.|.+.|+.|+..|.+.+|..||.++++|+.+|++.++||||++ |++||||.+|..||+.+.|.++.+|..||.|
T Consensus 12 ~~~~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~~PdY~~i-Ik~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~L 90 (130)
T 3k2j_A 12 DLGTENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKKYPDYYQQ-IKMPISLQQIRTKLKNQEYETLDHLECDLNL 90 (130)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhhCccHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 344578888999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2013 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2013 Mf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||.||+.||+++|.||++|..|+++|..+++..
T Consensus 91 if~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 123 (130)
T 3k2j_A 91 MFENAKRYNVPNSAIYKRVLKLQQVMQAKKKEL 123 (130)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-22 Score=212.15 Aligned_cols=118 Identities=18% Similarity=0.250 Sum_probs=104.6
Q ss_pred cHHHHHHHHHHHHHHHHhhc-cCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIE-KEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2014 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d-~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf 2014 (2240)
...-...|+.+++.|....+ ..||.++.+|+.+|.+.++||||++ |++||||.+|.+||+.++|.++.+|+.||.|||
T Consensus 22 ~~~~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~ 100 (150)
T 3tlp_A 22 KNIRKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKDYPDYYKI-ILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMF 100 (150)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhhCcCHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 33446679999999998875 6799999999999999999999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC--CCChhHHh
Q 000099 2015 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF--PDTDFREA 2054 (2240)
Q Consensus 2015 ~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~f--P~~~f~~a 2054 (2240)
.||+.||+++|.||.+|..|+++|..+++..+ ||.|+...
T Consensus 101 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~pd~d~~~~ 142 (150)
T 3tlp_A 101 RNARHYNEEGSQVYNDAHILEKLLKEKRKELGPLPDDDDMAS 142 (150)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHCCC--------
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCCCChhhcCC
Confidence 99999999999999999999999999999999 66666543
|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-21 Score=205.67 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=106.3
Q ss_pred CcHHHHHHHHHHHHHHHHhhcc-CCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEK-EGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~-~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLM 2013 (2240)
-++.++++|+.||+.|....|. .||.++.+|+.+|++.++||||++ |++||||.+|.+||+.++|.++.+|..||.||
T Consensus 8 ~~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 8 NPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYEL-IRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCcccCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 3578999999999999988764 899999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2014 f~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
|.||+.||+++|.||.+|..|+++|...++....
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 120 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEK 120 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999987654
|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5e-21 Score=202.81 Aligned_cols=111 Identities=23% Similarity=0.413 Sum_probs=103.8
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhcc--CCCCCHHHHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR--LEYNGVMELVSDV 2010 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~--~eY~~v~ef~~Dv 2010 (2240)
..|++..+++|..||..|. .|.++.+|+.+.+ .++||||++ |++||||.+|++||+. ++|.++++|+.||
T Consensus 15 ~~m~p~~~~~c~~il~~L~------~~~~s~~F~~Pv~-~~~pdY~~i-Ik~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv 86 (135)
T 2yyn_A 15 VKLTPIDKRKCERLLLFLY------CHEMSLAFQDPVP-LTVPDYYKI-IKNPMDLSTIKKRLQEDYSMYSKPEDFVADF 86 (135)
T ss_dssp -CCCHHHHHHHHHHHHHHH------TSGGGGGGSSCCC-TTSTTHHHH-CSSCCCHHHHHHHHHSSSCCCSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH------hCccchhhcCCCc-ccCCCHHHH-cCCCCCHHHHHHHHhccccCCCCHHHHHHHH
Confidence 3789999999999999997 4678999999554 489999999 9999999999999998 5999999999999
Q ss_pred HHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCChh
Q 000099 2011 QFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDF 2051 (2240)
Q Consensus 2011 qLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~~~f 2051 (2240)
+|||+||+.||+++|.||.+|..|+++|..+|+..||+.+|
T Consensus 87 ~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 127 (135)
T 2yyn_A 87 RLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYPEKRF 127 (135)
T ss_dssp HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999999999999987
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-20 Score=249.21 Aligned_cols=272 Identities=18% Similarity=0.215 Sum_probs=172.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps- 1075 (2240)
|..+ |+|.+++..++. +.+.|++.+||+|||+.++.++..+. ...+.+|||||+. |+.|+...|.+++..
T Consensus 55 g~~p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl~~lp~l~~~~---~~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLA---LKGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp CSCC-HHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHH---TTSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred CCCH-HHHHHHHHHHHh----CCCEEEEcCCCCCHHHHHHHHHHHHh---hcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 3358 999999988875 67899999999999984444444433 2346899999976 678899999998764
Q ss_pred -C----eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc--
Q 000099 1076 -V----SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-- 1148 (2240)
Q Consensus 1076 -l----kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-- 1148 (2240)
+ .+..++|+.....+......... .+|+|+|++.+......|. .+++|||||||++.+....+...+..+
T Consensus 127 ~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~lgf 203 (1054)
T 1gku_B 127 GVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLGF 203 (1054)
T ss_dssp CCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTTE
T ss_pred CCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHhCc
Confidence 4 67778876544322111111122 8999999999987755544 788999999999877444333333322
Q ss_pred ----------ccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHH
Q 000099 1149 ----------RCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIH 1218 (2240)
Q Consensus 1149 ----------ks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~ 1218 (2240)
.....+++|+|.-.. .++. ..|...+
T Consensus 204 ~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~~~~---------------------------- 239 (1054)
T 1gku_B 204 HYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELFRQL---------------------------- 239 (1054)
T ss_dssp EEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHHHHH----------------------------
T ss_pred chhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHhhcc----------------------------
Confidence 123467888885322 1000 0000000
Q ss_pred HHHHHhhHHHHHhhhhhhcc-CC-CCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHH
Q 000099 1219 RLHQILEPFMLRRRVEDVEG-SL-PPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNN 1296 (2240)
Q Consensus 1219 RLhklLrPFmLRRlKkDVek-dL-P~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~n 1296 (2240)
+ .+ .+.. .. +....+. .+
T Consensus 240 -----~---~i-----~v~~~~~~~~~i~~~-~~---------------------------------------------- 259 (1054)
T 1gku_B 240 -----L---NF-----DIGSSRITVRNVEDV-AV---------------------------------------------- 259 (1054)
T ss_dssp -----H---CC-----CCSCCEECCCCEEEE-EE----------------------------------------------
T ss_pred -----e---EE-----EccCcccCcCCceEE-Ee----------------------------------------------
Confidence 0 00 0000 00 0000000 00
Q ss_pred HHHHHHHHcCCCCCCCCCccccchhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecC
Q 000099 1297 RCMELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG 1376 (2240)
Q Consensus 1297 ilmqLRKICNHP~L~~p~~~~ls~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDG 1376 (2240)
...|...|..++.. .+.++||||.....++.|.++|... +.+..+||
T Consensus 260 -----------------------------~~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg 306 (1054)
T 1gku_B 260 -----------------------------NDESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK-FRIGIVTA 306 (1054)
T ss_dssp -----------------------------SCCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS-SCEEECTT
T ss_pred -----------------------------chhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEec
Confidence 01122223333322 2678999999999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCccEEEEe----cccccccCCCCCC-CeEEEcCCC
Q 000099 1377 TTSLEDRESAIVDFNSHDSDCFIFLLS----IRAAGRGLNLQSA-DTVIIYDPD 1425 (2240)
Q Consensus 1377 sTs~eEReeaIk~FNs~Ds~~fVfLLS----TrAGGeGLNLQaA-DtVIifD~p 1425 (2240)
.+ ..++++|+.+..+ +||+ |+++++|||++.+ ++||+||.|
T Consensus 307 ~~-----~~~l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 307 TK-----KGDYEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp SS-----SHHHHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred cH-----HHHHHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 97 3788999976554 5666 9999999999996 999999999
|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=194.96 Aligned_cols=113 Identities=12% Similarity=0.149 Sum_probs=104.3
Q ss_pred CccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHH
Q 000099 1928 SSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2007 (2240)
Q Consensus 1928 s~~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2007 (2240)
|.++..+.+....++|..|++.|. .+..+++|+.+|+..++||||++ |++||||.+|+.||+.+.|.++++|+
T Consensus 3 s~~k~~~~~~~~~~~c~~il~~l~------~~~~s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y~~~~~f~ 75 (117)
T 3g0l_A 3 SVKKPKRDDSKDLALCSMILTEME------THEDAWPFLLPVNLKLVPGYKKV-IKKPMDFSTIREKLSSGQYPNLETFA 75 (117)
T ss_dssp TCCCCCCCCTTHHHHHHHHHHHHH------TSTTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHH
T ss_pred CCcCCCcCCHHHHHHHHHHHHHHH------hCCCchhhcCcCChhhcCChHHH-cCCCCCHHHHHHHHhCCCCCCHHHHH
Confidence 344555677777789999999997 45679999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2008 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2008 ~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
.||.|||.||+.||+++|++|.+|..|+++|..+|+..|=
T Consensus 76 ~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~ 115 (117)
T 3g0l_A 76 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFK 115 (117)
T ss_dssp HHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999998874
|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-20 Score=190.92 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2015 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~ 2015 (2240)
++.+++.|+.|+++|.. |..+.+|+.+|++.++||||++ |++||||.+|+.||++++|.++.+|.+||+|||.
T Consensus 5 ~~~l~~~~~~il~~l~~------~~~~~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~ 77 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKS------HPSAWPFMEPVKKSEAPDYYEV-IRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIA 77 (112)
T ss_dssp HHHHHHHHHHHHHHHHH------SGGGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc------CCCchhhcCCCCcccccCHHHH-ccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 57889999999999974 4689999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2016 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2016 Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||+.||+++|.+|.+|..|+++|..+|+..
T Consensus 78 Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 78 NCREYNPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999863
|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-20 Score=196.66 Aligned_cols=109 Identities=14% Similarity=0.179 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2014 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf 2014 (2240)
.+..+|+.+++|+..+..++|++||.+|++|+++|+|+ |+||. ++||||.+|.+||+++.|.++++|..||.|||
T Consensus 4 v~~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~--pdYY~---k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf 78 (147)
T 3iu6_A 4 VTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD--PNFPN---KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVL 78 (147)
T ss_dssp CCCHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC--TTSTT---SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC--ccccC---CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999 89997 79999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCC
Q 000099 2015 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPD 2048 (2240)
Q Consensus 2015 ~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~ 2048 (2240)
+||+.||+++|+||+||..|+++|..++...+.+
T Consensus 79 ~NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~~ 112 (147)
T 3iu6_A 79 ERARRMNRTDSEIYEDAVELQQFFIKIRDELCKN 112 (147)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999998774
|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-20 Score=195.29 Aligned_cols=113 Identities=14% Similarity=0.266 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
+.++++|..||..|.... .+++|+.+|+..++||||++ |++||||.+|..||+.+.|.++++|+.||.|||.|
T Consensus 20 ~~l~~~~~~il~~l~~~~------~s~~F~~pv~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 92 (135)
T 3mb3_A 20 QAWKKQCEELLNLIFQCE------DSEPFRQPVDLLEYPDYRDI-IDTPMDFATVRETLEAGNYESPMELCKDVRLIFSN 92 (135)
T ss_dssp STHHHHHHHHHHHHHHSG------GGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC------CChhhcCCCChhhCCCHHHH-hCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 567889999999998653 48999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCC-CcHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhccccc
Q 000099 2017 AMQFYGF-SHEVRSEARKVHDLFFDLLKIAFPDTDFREARSALSFT 2061 (2240)
Q Consensus 2017 a~~yn~~-~sev~~dA~~L~~~F~~~~k~~fP~~~f~~a~~a~~~~ 2061 (2240)
|+.||++ +|.||.+|..|+++|...|+.+|| +-+.|+.++
T Consensus 93 a~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~-----~~~~~~r~~ 133 (135)
T 3mb3_A 93 SKAYTPSKRSRIYSMSLRLSAFFEEHISSVLS-----DYKSALRFH 133 (135)
T ss_dssp HHHHSCCTTCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHTCC-
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhc
Confidence 9999998 999999999999999999999977 445555543
|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-20 Score=193.21 Aligned_cols=105 Identities=13% Similarity=0.240 Sum_probs=98.7
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLK 2015 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~ 2015 (2240)
++.++++|+.||+.|... ..+.+|+.+|++.++||||++ |++||||.+|..||+.+.|.++.+|+.||.|||.
T Consensus 8 ~~~~~~~c~~il~~l~~~------~~s~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~ 80 (123)
T 3q2e_A 8 ESNWKKQCKELVNLIFQC------EDSEPFRQPVDLVEYPDYRDI-IDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFS 80 (123)
T ss_dssp --CHHHHHHHHHHHHHTS------GGGGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC------CCcHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 467889999999999844 469999999999999999999 9999999999999999999999999999999999
Q ss_pred hhhhhcCC-CcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2016 GAMQFYGF-SHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2016 Na~~yn~~-~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
||+.||++ +|.||.+|..|+++|..+++..+|
T Consensus 81 Na~~yN~~~~s~i~~~A~~L~~~f~~~~~~~~~ 113 (123)
T 3q2e_A 81 NAKAYTPNKRSKIYSMTLRLSALFEEKMKKISS 113 (123)
T ss_dssp HHHHHSCCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999996 999999999999999999999987
|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-20 Score=191.18 Aligned_cols=110 Identities=15% Similarity=0.194 Sum_probs=101.7
Q ss_pred cccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcc--cccCCCccccccCCccChHHHHhhhccCCCCCHHHHH
Q 000099 1930 NFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWK--RIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2007 (2240)
Q Consensus 1930 ~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~--R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2007 (2240)
....+++..++..|+.||+.|. .|..+++|+.+++ +.++||||++ |++||||.+|++||+.++|.++++|+
T Consensus 13 ~~~~r~~~~l~~~~~~il~~L~------~~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~ 85 (127)
T 2oss_A 13 NKPKRQTNQLQYLLRVVLKTLW------KHQFAWPFQQPVDAVKLNLPDYYKI-IKTPMDMGTIKKRLENNYYWNAQECI 85 (127)
T ss_dssp TSCCCCCHHHHHHHHTHHHHHH------TSTTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHHHH------hCccchhhcCCCChhhccCccHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 3456889999999999999997 3678999999976 6699999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2008 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2008 ~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
+||.|||+||+.||+++|.+|.+|..|+++|..+|+..-
T Consensus 86 ~D~~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 86 QDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999997653
|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=187.10 Aligned_cols=106 Identities=15% Similarity=0.208 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
..+++.|+.|+++|.+ +..+.+|..++++.++||||++ |++||||.+|..||++++|.++.+|.+||+|||+|
T Consensus 7 ~~l~~~l~~il~~L~~------~~~~~~F~~PVd~~~~pdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~N 79 (117)
T 2i7k_A 7 TPLQEALNQLMRQLQR------KDPSAFFSFPVTDFIAPGYSMI-IKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTN 79 (117)
T ss_dssp HHHHHHHHHHHHHHHT------SSGGGTSSSCCCTTTSSSHHHH-CSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh------CcccHHhcCCCCccccCCHHHH-hCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 3567899999999974 3567899999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCC
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDT 2049 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~~ 2049 (2240)
|+.||+++|.+|.+|..|++.|..+++.+.=++
T Consensus 80 a~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~~~ 112 (117)
T 2i7k_A 80 AMIYNKPETIYYKAAKKLLHSGMKILSQERLEH 112 (117)
T ss_dssp HHHTSCSSSSHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999887654
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8e-18 Score=219.02 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=104.2
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
...|+..|..++..+...+..|||||......+.|...|...|+++..|+|.....+|..+...|+. +. +||+|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeCC
Confidence 4568888888888777788999999999999999999999999999999999887777655555543 23 799999
Q ss_pred cccccCCCC--------CCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1406 AAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1406 AGGeGLNLQ--------aADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
.+|+|+|+. +..+||+||.|-++..|.|++||++|.|.+.....|
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~ 541 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 541 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEE
Confidence 999999999 788999999999999999999999999988776544
|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=188.73 Aligned_cols=103 Identities=11% Similarity=0.159 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
.-++..|+.||.+|..+ ..+.+|+.+|+..++||||++ |++||||.+|..||++++|.++++|..||+|||.|
T Consensus 6 ~pl~~~l~~il~~l~~~------~~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 78 (121)
T 2d9e_A 6 SGFLILLRKTLEQLQEK------DTGNIFSEPVPLSEVPDYLDH-IKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSN 78 (121)
T ss_dssp CHHHHHHHHHHHHHHHH------CSSCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcC------CccHhhCCcCCccccCCHHHH-cCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 34677999999999854 468999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
|+.||+++|.+|.+|..|+++|..+|+.+.
T Consensus 79 a~~yN~~~s~~~~~A~~L~~~~~~~l~~~~ 108 (121)
T 2d9e_A 79 CLKYNAKDTIFYRAAVRLREQGGAVLRQAR 108 (121)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887653
|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=188.52 Aligned_cols=98 Identities=14% Similarity=0.259 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000099 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2020 (2240)
Q Consensus 1941 ~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~y 2020 (2240)
+.|..||++|. +|..+.+|+.+|++.++||||++ |++||||.+|..||+.++|.++.+|..||.|||.||+.|
T Consensus 16 ~~~~~il~~l~------~~~~a~~F~~pvd~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 88 (121)
T 1e6i_A 16 AAIQNILTELQ------NHAAAWPFLQPVNKEEVPDYYDF-IKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMY 88 (121)
T ss_dssp HHHHHHHHHHH------HSTTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------cCCCchhhCCCCChhhCcCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 47999999997 36789999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2021 YGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2021 n~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
|+++|.+|.+|..|+++|..+++..
T Consensus 89 N~~~s~i~~~A~~L~~~f~~~~~~~ 113 (121)
T 1e6i_A 89 NGENTSYYKYANRLEKFFNNKVKEI 113 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999864
|
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-19 Score=187.91 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=98.2
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhccccc--CCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHH
Q 000099 1934 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIE--TSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQ 2011 (2240)
Q Consensus 1934 kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~--~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~Dvq 2011 (2240)
++++.++ +|..||.+|. ...++.+++.|+.+++... +||||++ |++||||.+|..||+.+.|.++++|+.||.
T Consensus 6 ~~~~~l~-~c~~il~~l~---~~~~~~~a~~F~~pvd~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~ 80 (120)
T 3jvl_A 6 KISEQLK-CCSGILKEMF---AKKHAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLESREYRDAQEFGADVR 80 (120)
T ss_dssp SSCHHHH-HHHHHHHHHT---SGGGHHHHGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred hhHHHHH-HHHHHHHHHH---hCcCccccchhcCCCCchhcCCCCHHHH-cCCCCCHHHHHHHHccCCCCCHHHHHHHHH
Confidence 4555554 9999999995 4446678999999999888 9999999 999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2012 FMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2012 LMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
|||.||+.||+++|.||.+|..|+++|..+++..-
T Consensus 81 li~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~p 115 (120)
T 3jvl_A 81 LMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMP 115 (120)
T ss_dssp HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999987653
|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-19 Score=189.97 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=96.9
Q ss_pred cccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhccc--ccCCCccccccCCccChHHHHhhhccCCCCCHHHHH
Q 000099 1930 NFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKR--IETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELV 2007 (2240)
Q Consensus 1930 ~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R--~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~ 2007 (2240)
....++++.++ +|.+||..|.... .+.++++|+.++.. .++||||++ |++||||.+|..||+.+.|.++.+|.
T Consensus 15 ~k~~~~~~~l~-~c~~il~~L~~~~---~~~~a~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~ef~ 89 (130)
T 2ouo_A 15 EKSSKVSEQLK-CCSGILKEMFAKK---HAAYAWPFYKPVDVEALGLHDYCDI-IKHPMDMSTIKSKLEAREYRDAQEFG 89 (130)
T ss_dssp ----CHHHHHH-HHHHHHHHHTSGG---GHHHHGGGSSCCCTTSTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHH
T ss_pred CCCcccHHHHH-HHHHHHHHHHhCC---cchhHHHhcCCCChhhccCCcHHHH-cCCCCCHHHHHHHHHcCCCCCHHHHH
Confidence 34457777775 8999999997543 34588999999654 569999999 99999999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2008 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2008 ~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
.||.|||.||+.||+++|.||.+|..|+++|..+|+..
T Consensus 90 ~Dv~li~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l 127 (130)
T 2ouo_A 90 ADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKM 127 (130)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999864
|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-19 Score=193.54 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=101.6
Q ss_pred ccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccc--cCCCccccccCCccChHHHHhhhccCCCCCHHHHHH
Q 000099 1931 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2008 (2240)
Q Consensus 1931 ~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~--~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2008 (2240)
...+++..++..|+.||+.|.. +..+++|+.++... ++||||++ |++||||.+|..||+.+.|.++.+|+.
T Consensus 25 ~~~r~t~~l~~~~~~il~~l~~------~~~a~~F~~PVd~~~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~ 97 (154)
T 4alg_A 25 KPGRVTNQLQYLHKVVMKALWK------HQFAWPFRQPVDAVKLGLPDYHKI-IKQPMDMGTIKRRLENNYYWAASECMQ 97 (154)
T ss_dssp -CCCCBHHHHHHHHTHHHHHHT------STTCGGGSSCCCTTTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHh------CcCchhhcCCCChhhccCCCHHHH-cCCCCCHHHHHHHHhcCCCCCHHHHHH
Confidence 3458999999999999999974 47899999998866 89999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2009 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2009 DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
||.|||.||+.||+++|.||.+|..|+++|..+|+..-+
T Consensus 98 Dv~Lif~Na~~YN~~~s~i~~~A~~L~~~f~~~~~~l~~ 136 (154)
T 4alg_A 98 DFNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQKVASMPQ 136 (154)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCc
Confidence 999999999999999999999999999999999987544
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-19 Score=219.80 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=87.0
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEc
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1422 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIif 1422 (2240)
.+.++||||+....++.|.+.|...|+.+..+||.+. .++++.|+++... +|++|+++++|||++. ++||+|
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEEC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEEC
Confidence 3568999999999999999999999999999999764 5789999976555 7999999999999999 999999
Q ss_pred C--------------------CCCChhhHHHHhhhhhccCC-cceE
Q 000099 1423 D--------------------PDPNPKNEEQAVARAHRIGQ-KREV 1447 (2240)
Q Consensus 1423 D--------------------~pWNP~~d~QAiGRAhRIGQ-KKeV 1447 (2240)
| .|.++..|+|++||++|.|. ...+
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~ 304 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQ 304 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccE
Confidence 9 89999999999999999997 4444
|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.4e-19 Score=184.02 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
..++|..||..|... ..+++|+.+++..++||||++ |++||||.+|+.||+.+.|.++++|+.||.|||.||+
T Consensus 17 ~~~~~~~il~~l~~~------~~s~~F~~pv~~~~~pdY~~~-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 89 (116)
T 3nxb_A 17 DFTAMYKVLDVVKAH------KDSWPFLEPVDESYAPNYYQI-IKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCR 89 (116)
T ss_dssp HHHHHHHHHHHHHHS------TTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC------CCcHhhcCcCChhhccChHHH-cCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 345899999999754 447899999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
.||+++|++|.+|..|+++|...|.+
T Consensus 90 ~yN~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 90 KYNGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999875
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-18 Score=213.25 Aligned_cols=97 Identities=20% Similarity=0.117 Sum_probs=85.9
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCe----
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT---- 1418 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADt---- 1418 (2240)
.+.++||||.....++.+.+.|...++.+..+||. +|.++++.|+++..+ +|++|+++++|||++ +++
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEEC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEec
Confidence 36689999999999999999999999999999997 578899999986655 799999999999999 555
Q ss_pred -------------EEEcCCCCChhhHHHHhhhhhccCCcceE
Q 000099 1419 -------------VIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1419 -------------VIifD~pWNP~~d~QAiGRAhRIGQKKeV 1447 (2240)
||++|.+.+...|.|++||++|.|....+
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~ 283 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGD 283 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCe
Confidence 57889999999999999999999965433
|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.1e-19 Score=198.82 Aligned_cols=114 Identities=21% Similarity=0.322 Sum_probs=105.4
Q ss_pred ccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhcc---CCCCCHHHHH
Q 000099 1931 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR---LEYNGVMELV 2007 (2240)
Q Consensus 1931 ~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~---~eY~~v~ef~ 2007 (2240)
....|++..+++|+.||..|.. |.++..|+.++. .++||||++ |++||||.+|.+||+. +.|.++.+|+
T Consensus 74 ~~~~ls~~~~~~c~~il~~l~~------~~~s~~F~~Pv~-~~~pdY~~i-Ik~PmdL~tI~~kl~~~~~~~Y~s~~~f~ 145 (207)
T 3u5n_A 74 TAQGLSPVDQRKCERLLLYLYC------HELSIEFQEPVP-ASIPNYYKI-IKKPMDLSTVKKKLQKKHSQHYQIPDDFV 145 (207)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHT------STTCGGGSSCCC-TTSTTHHHH-CSSCCCHHHHHHHHSTTSTTCCSSHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHHHh------ccchhhhhccCC-hhhccHhHH-hCCccCHHHHHHHHhcccCCCcCCHHHHH
Confidence 3457999999999999999973 568899999655 489999999 9999999999999997 7999999999
Q ss_pred HHHHHHHHhhhhhcC-----------------CCcHHHHHHHHHHHHHHHHHHHhCCCChhH
Q 000099 2008 SDVQFMLKGAMQFYG-----------------FSHEVRSEARKVHDLFFDLLKIAFPDTDFR 2052 (2240)
Q Consensus 2008 ~DvqLMf~Na~~yn~-----------------~~sev~~dA~~L~~~F~~~~k~~fP~~~f~ 2052 (2240)
.||.|||.||+.||+ ++|+|+++|..|+.+|..+|+..|||.+|.
T Consensus 146 ~Dv~li~~Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~p~~~f~ 207 (207)
T 3u5n_A 146 ADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIYSDRTFA 207 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHSTTCCCC
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999 999999999999999999999999999983
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=217.33 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=109.5
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..|..++..+...+..|||||......+.|...|...|+++..|+|.....+|..+...|+.+ . ++|+|
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~---VtIAT 496 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A---VTIAT 496 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C---EEEEE
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEec
Confidence 345688899888888777889999999999999999999999999999999998877777677777743 3 89999
Q ss_pred ccccccCCCCCC-------------------------------------CeEEEcCCCCChhhHHHHhhhhhccCCcceE
Q 000099 1405 RAAGRGLNLQSA-------------------------------------DTVIIYDPDPNPKNEEQAVARAHRIGQKREV 1447 (2240)
Q Consensus 1405 rAGGeGLNLQaA-------------------------------------DtVIifD~pWNP~~d~QAiGRAhRIGQKKeV 1447 (2240)
+.+|+|+|+... .+||+||.|-++..|.|++||++|.|.+...
T Consensus 497 nmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 497 NMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp SCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 999999999863 5999999999999999999999999988766
Q ss_pred EEEEEehhHHHhh
Q 000099 1448 KVIYMEAVVDKIS 1460 (2240)
Q Consensus 1448 ~VyrLvTVEEkI~ 1460 (2240)
..| ++.++.+.
T Consensus 577 ~~f--ls~eD~l~ 587 (853)
T 2fsf_A 577 RFY--LSMEDALM 587 (853)
T ss_dssp EEE--EETTSGGG
T ss_pred EEE--ecccHHHH
Confidence 544 34444433
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=212.75 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=81.8
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE-
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1421 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi- 1421 (2240)
.+.++||||.....++.+.+.|...++.+..+|| ++|.++++.|+++... +|++|+++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 4789999999999999999999999999999999 4688999999976655 799999999999999 999986
Q ss_pred ------------------cCCCCChhhHHHHhhhhhccC-CcceEEEE
Q 000099 1422 ------------------YDPDPNPKNEEQAVARAHRIG-QKREVKVI 1450 (2240)
Q Consensus 1422 ------------------fD~pWNP~~d~QAiGRAhRIG-QKKeV~Vy 1450 (2240)
||.|.++..|.|++||++|.| .+..+.++
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 899999999999999999984 55555544
|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-19 Score=187.44 Aligned_cols=106 Identities=14% Similarity=0.237 Sum_probs=98.6
Q ss_pred cCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHH
Q 000099 1934 KMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013 (2240)
Q Consensus 1934 kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLM 2013 (2240)
++.+ ++..|+.||++|.. |..+++|+.+++..++||||++ |++||||.+|..||+.+.|.++++|+.||.||
T Consensus 10 ~~~~-l~~~l~~il~~l~~------~~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li 81 (135)
T 3rcw_A 10 RLTP-LTVLLRSVLDQLQD------KDPARIFAQPVSLKEVPDYLDH-IKHPMDFATMRKRLEAQGYKNLHEFEEDFDLI 81 (135)
T ss_dssp CCCH-HHHHHHHHHHHHHH------TCTTCSSSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred cchH-HHHHHHHHHHHHHh------CCcchhhcCCCChhhcCCHHHH-hCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4444 77799999999975 5678999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2014 f~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
|.||+.||+++|.+|.+|..|+++|..+++.+.-
T Consensus 82 ~~Na~~yN~~~s~~~~~A~~L~~~~~~~~~~~~~ 115 (135)
T 3rcw_A 82 IDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARR 115 (135)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998744
|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=181.07 Aligned_cols=106 Identities=16% Similarity=0.192 Sum_probs=98.1
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccc--cCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRI--ETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~--~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLM 2013 (2240)
++.+.+.|..+|.+|.+ .+..+..|..++... ++||||++ |++||||.+|..||+.+.|.++++|+.||.||
T Consensus 9 ~~el~~~l~~~l~~l~~-----~~~~s~~F~~pv~~~~~~~pdY~~i-I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li 82 (119)
T 3p1f_A 9 PEELRQALMPTLEALYR-----QDPESLPFRQPVDPQLLGIPDYFDI-VKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLM 82 (119)
T ss_dssp HHHHHHHHHHHHHHHHT-----CTTTTGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----hCCCCchhcCCCCchhccCCCHHHH-hcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 46788899999999864 356889999998766 89999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2014 f~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
|+||+.||+++|.+|.+|..|+++|...++..|.
T Consensus 83 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~~~ 116 (119)
T 3p1f_A 83 FNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 116 (119)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.9e-19 Score=182.92 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
++..|..|+..|.. +..+.+|..+++..++||||++ |++||||.+|..||+.++|.++++|+.||.|||.||+
T Consensus 14 ~~~~l~~il~~l~~------~~~~~~F~~pv~~~~~pdY~~i-Ik~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~ 86 (123)
T 3hme_A 14 IQQLLEHFLRQLQR------KDPHGFFAFPVTDAIAPGYSMI-IKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAM 86 (123)
T ss_dssp HHHHHHHHHHHHHT------TCTTCSSSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh------CCccHhhcCCCChhhccCHHHH-CCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH
Confidence 56699999999974 4457799999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
.||+++|.+|.+|..|++.|...|..
T Consensus 87 ~yN~~~s~~~~~A~~L~~~~~~~~~~ 112 (123)
T 3hme_A 87 TYNRPDTVYYKLAKKILHAGFKMMSK 112 (123)
T ss_dssp HHSCTTSHHHHHHHHHHHHHHHHTCH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.7e-17 Score=211.71 Aligned_cols=127 Identities=15% Similarity=0.135 Sum_probs=106.7
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
...|+..|...+..+...+..|||||......+.|...|...|+++..|+|.....++..+...|+.+ . ++|+|+
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--G---VTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 34688888888888777889999999999999999999999999999999998766666566666642 3 799999
Q ss_pred cccccCCCCCC----------------------------------------------------CeEEEcCCCCChhhHHH
Q 000099 1406 AAGRGLNLQSA----------------------------------------------------DTVIIYDPDPNPKNEEQ 1433 (2240)
Q Consensus 1406 AGGeGLNLQaA----------------------------------------------------DtVIifD~pWNP~~d~Q 1433 (2240)
.+|+|+|+... .+||+||.|-++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999964 49999999999999999
Q ss_pred HhhhhhccCCcceEEEEEEehhHHHh
Q 000099 1434 AVARAHRIGQKREVKVIYMEAVVDKI 1459 (2240)
Q Consensus 1434 AiGRAhRIGQKKeV~VyrLvTVEEkI 1459 (2240)
++||++|.|.......| ++.++.+
T Consensus 597 r~GRTGRqGdpG~s~ff--lSleD~l 620 (922)
T 1nkt_A 597 LRGRSGRQGDPGESRFY--LSLGDEL 620 (922)
T ss_dssp HHHTSSGGGCCEEEEEE--EETTSHH
T ss_pred HhcccccCCCCeeEEEE--echhHHH
Confidence 99999999988766544 3444443
|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=189.19 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=95.7
Q ss_pred ccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHH
Q 000099 1931 FSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVS 2008 (2240)
Q Consensus 1931 ~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~ 2008 (2240)
.+..+...+.+.|+.||.+|.. +..+.+|..+ |++.++||||++ |++||||.+|..||+.+.|.++.+|+.
T Consensus 14 ~~~p~~~~~~~~~~~il~~L~~------~~~s~~F~~PVd~~~~~~pdY~~i-Ik~PmDL~tI~~kL~~~~Y~s~~ef~~ 86 (166)
T 3fkm_X 14 LYFQGNKQWYLLANQLILSLSK------YEGGHIFEKLVDAKKQNCPDYYDV-IKNPMSFSCIKTKLKKGQYAYPSEFVK 86 (166)
T ss_dssp ---CTTHHHHHHHHHHHHHHTT------STTGGGGSSCCC-----CCCGGGC-CSSCCCHHHHHHHHHHTCCCSHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHh------CCCChhhcCCCChhhccCCCHHHh-cCCCCCHHHHHHHHcCCCCCCHHHHHH
Confidence 3457788999999999999973 5678899999 557799999999 999999999999999999999999999
Q ss_pred HHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2009 DVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2009 DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
||.|||.||+.||+++|.||.+|..|+++|..+|+.+-
T Consensus 87 Dv~Lif~Na~~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 87 DVQLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HHHHHHHHHHHSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999998854
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-18 Score=200.97 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=124.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~P--s 1075 (2240)
.+|+|||.+++.+++. +.++||+++||+|||+++++++..++. . ..+++|||||+ .|+.||.++|.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~-~-~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLE-N-YEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHH-H-CSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHH-c-CCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999999887 357899999999999999888877665 2 23589999997 588999999999964 3
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc-ccceEE
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRL 1154 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks~~RL 1154 (2240)
..+..+.++..... ......+|+|+||+.+.+....+ ..+|++|||||||++.+. .+...+..+ ...++|
T Consensus 186 ~~~~~~~~~~~~~~------~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l 256 (282)
T 1rif_A 186 AMIKKIGGGASKDD------KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKF 256 (282)
T ss_dssp GGEEECSTTCSSTT------CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEE
T ss_pred ceEEEEeCCCcchh------hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEE
Confidence 45555555433211 12356799999999997764322 247899999999999853 555566666 578899
Q ss_pred EeecCCCCCCHHHHHHHHhhhcc
Q 000099 1155 LLTGTPLQNDLKELWSLLNLLLP 1177 (2240)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP 1177 (2240)
+|||||.. ...+++.++.++.|
T Consensus 257 ~lSATp~~-~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 257 GLSGSLRD-GKANIMQYVGMFGE 278 (282)
T ss_dssp EECSSCCT-TSTTHHHHHHHHCE
T ss_pred EEeCCCCC-cchHHHHHHHhcCC
Confidence 99999964 45788888887765
|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=191.73 Aligned_cols=107 Identities=21% Similarity=0.382 Sum_probs=100.0
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhcc--CCCCCHHHHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDR--LEYNGVMELVSDV 2010 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~--~eY~~v~ef~~Dv 2010 (2240)
..|++..+++|+.||.+|... ..+.+|+.++. .++||||++ |++||||.+|++||+. +.|.++++|+.||
T Consensus 76 ~~l~~~~~~~c~~il~~l~~~------~~s~~F~~Pv~-~~~pdY~~i-Ik~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv 147 (184)
T 3o36_A 76 VKLTPIDKRKCERLLLFLYCH------EMSLAFQDPVP-LTVPDYYKI-IKNPMDLSTIKKRLQEDYSMYSKPEDFVADF 147 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHS------TTCHHHHSCCC-TTSTTHHHH-CSSCCCHHHHHHHHHSTTCSCCSHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhc------hhhhhhccccc-cCCCchhhh-cCCCCCHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 478999999999999999854 46889998655 579999999 9999999999999998 7999999999999
Q ss_pred HHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2011 QFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2011 qLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
.|||.||+.||+++|+||.+|..|+++|..+|+.+||
T Consensus 148 ~li~~Na~~yN~~~s~v~~~a~~L~~~f~~~~~~~~P 184 (184)
T 3o36_A 148 RLIFQNCAEFNEPDSEVANAGIKLENYFEELLKNLYP 184 (184)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999998
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-18 Score=214.31 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=85.9
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE-
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1421 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi- 1421 (2240)
.+.++||||.....++.|.+.|...|+.+..++|. +|..+++.|+.+..+ +||+|+++++|||++. ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 36799999999999999999999999999999995 678899999876555 7999999999999999 99998
Q ss_pred -------------------cCCCCChhhHHHHhhhhhccCC-cceEEEE
Q 000099 1422 -------------------YDPDPNPKNEEQAVARAHRIGQ-KREVKVI 1450 (2240)
Q Consensus 1422 -------------------fD~pWNP~~d~QAiGRAhRIGQ-KKeV~Vy 1450 (2240)
||.|.++..|+|++||++|.|. ...+.+|
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~ 309 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHY 309 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEE
Confidence 8899999999999999999996 4445444
|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-18 Score=189.58 Aligned_cols=106 Identities=18% Similarity=0.230 Sum_probs=100.0
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2012 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqL 2012 (2240)
..|++...+.|+.||..|. .|.++.+|+.+++..++||||++ |++||||.+|.+||+++.|.++++|+.||+|
T Consensus 67 ~~l~~~~~~~l~~il~~l~------~~~~~~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~l 139 (174)
T 2ri7_A 67 TPLTEKDYEGLKRVLRSLQ------AHKMAWPFLEPVDPNDAPDYYGV-IKEPMDLATMEERVQRRYYEKLTEFVADMTK 139 (174)
T ss_dssp SBCCHHHHHHHHHHHHHHH------TSGGGTTTSSCCCTTTCHHHHHH-CSSCCCHHHHHHHHHTTCCCBHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHH------hhhhhhhhhcCCCcccCCchHHH-hCCcCCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3678888889999999997 46789999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2013 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2013 Mf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||.||+.||+++|.+|++|..|+++|.++|+.+
T Consensus 140 i~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 140 IFDNCRYYNPSDSPFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998754
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=216.80 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=89.0
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE-
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII- 1421 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi- 1421 (2240)
.+.++||||.....++.+.+.|...++.+..+||. +|.++++.|+++..+ +||+|+++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEEC
Confidence 57899999999999999999999999999999993 799999999976555 799999999999999 999997
Q ss_pred -------------------cCCCCChhhHHHHhhhhhcc-CCcceEEEE
Q 000099 1422 -------------------YDPDPNPKNEEQAVARAHRI-GQKREVKVI 1450 (2240)
Q Consensus 1422 -------------------fD~pWNP~~d~QAiGRAhRI-GQKKeV~Vy 1450 (2240)
||.|.++..|.|++||++|. |++..+.+|
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 67888999999999999999 555555544
|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-18 Score=176.91 Aligned_cols=109 Identities=18% Similarity=0.271 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhh
Q 000099 1938 VIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGA 2017 (2240)
Q Consensus 1938 ~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na 2017 (2240)
.+...|+.+++.|. .+..+++|+.+|+..++||||++ |++||||.+|..||+.+.|.++.+|+.||.|||.||
T Consensus 10 ~l~~~l~~il~~l~------~~~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na 82 (130)
T 3dai_A 10 ELRIFLRNVTHRLA------IDKRFRVFTKPVDPDEVPDYVTV-IKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNA 82 (130)
T ss_dssp HHHHHHHHHHHHHH------TSGGGGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------cCCccHhhcCCCChhhcCCHHHH-cCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 45566888888886 55679999999999999999999 999999999999999999999999999999999999
Q ss_pred hhhcCCCcHH----HHHHHHHHHHHHHHHHHhCCCChhHHh
Q 000099 2018 MQFYGFSHEV----RSEARKVHDLFFDLLKIAFPDTDFREA 2054 (2240)
Q Consensus 2018 ~~yn~~~sev----~~dA~~L~~~F~~~~k~~fP~~~f~~a 2054 (2240)
+.||+++|++ |.+|+.|++.|..+++..+.. +|...
T Consensus 83 ~~yN~~~s~~~~~i~~~A~~L~~~~~~~i~~el~~-~~~~~ 122 (130)
T 3dai_A 83 LEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDE-DFEQL 122 (130)
T ss_dssp HHHCCSSSHHHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHH
T ss_pred HHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHH
Confidence 9999999877 899999999999999877654 66543
|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.6e-18 Score=182.91 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=98.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2014 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf 2014 (2240)
|.+. +..|..+|..+...+ -.++..+++|+.+|++..+||||++ |++||||.+|..||+.+.|.++.+|+.||.|||
T Consensus 23 ~~d~-~~~l~~iL~~i~~~k-l~~~~~s~~F~~PVd~~~~PdY~~i-Ik~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif 99 (158)
T 3uv4_A 23 MDDD-QVAFSFILDNIVTQK-MMAVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLIL 99 (158)
T ss_dssp CSHH-HHHHHHHHHHHHHHT-TTTSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred CCch-HHHHHHHHHHHHHHH-HHcCCCchhhcCcCChhhcccHHHH-cCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4444 557888888875432 3468899999999999999999999 999999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhC
Q 000099 2015 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAF 2046 (2240)
Q Consensus 2015 ~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~f 2046 (2240)
.||+.||+++|.||.+|..|+++|.+.|+.+-
T Consensus 100 ~Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~ 131 (158)
T 3uv4_A 100 ANSVKYNGPESQYTKTAQEIVNVCYQTLTEYD 131 (158)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998864
|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-18 Score=188.58 Aligned_cols=110 Identities=26% Similarity=0.292 Sum_probs=102.2
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccC--CccChHHHHhhhccC---CCCCHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGN--NILDLRKIDQRVDRL---EYNGVMELV 2007 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~--~PiDL~~I~qri~~~---eY~~v~ef~ 2007 (2240)
.+|++..+++|..||.+|.. |..+++|+++++ |+||.+ |+ +||||.||..||+.+ .|.++++|+
T Consensus 71 ~~m~~~~~~~c~~iL~~l~~------~~~s~pF~~pV~----~~Yy~i-Ik~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~ 139 (189)
T 2ro1_A 71 AKLSPANQRKCERVLLALFC------HEPCRPLHQLAT----DSTFSL-DQPGGTLDLTLIRARLQEKLSPPYSSPQEFA 139 (189)
T ss_dssp CSSCHHHHHHHHHHHHHHHH------STTHHHHHSCSC----CTTCSS-SCSSCCCCHHHHHHHHHTSSSSCCSCHHHHH
T ss_pred cCCCHHHHHHHHHHHhhccc------CccchhhcCCCC----hhhhcc-ccCCCcccHHHHHHHHhcCCCcccCCHHHHH
Confidence 47899999999999999974 568999999986 899999 98 899999999999999 999999999
Q ss_pred HHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCChhHHh
Q 000099 2008 SDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREA 2054 (2240)
Q Consensus 2008 ~DvqLMf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~~~f~~a 2054 (2240)
+||+|||+||+.|| +++.+|.+|..|+++|..+|+.+||+..|..+
T Consensus 140 ~Dv~Lif~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~~~~~~~~ 185 (189)
T 2ro1_A 140 QDVGRMFKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFGDTKFSAV 185 (189)
T ss_dssp HHHHHHHHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTTTSCSCTT
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcCcccCccc
Confidence 99999999999999 58999999999999999999999999888643
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=210.78 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=85.0
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeE---
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTV--- 1419 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtV--- 1419 (2240)
.+.++||||+....++.|.+.|...++.+..+||. +|.++++.|+++..+ +|++|+++++|||+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEEC
Confidence 46799999999999999999999999999999984 788899999986655 799999999999996 8988
Q ss_pred -----------------EEcCCCCChhhHHHHhhhhhccCCc
Q 000099 1420 -----------------IIYDPDPNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1420 -----------------IifD~pWNP~~d~QAiGRAhRIGQK 1444 (2240)
|+||.|-++..|+||+||++|.|..
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~ 467 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 467 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCC
Confidence 7777788999999999999999863
|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=176.60 Aligned_cols=109 Identities=16% Similarity=0.280 Sum_probs=96.5
Q ss_pred CCccccccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHH
Q 000099 1927 GSSNFSAKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMEL 2006 (2240)
Q Consensus 1927 gs~~~~~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef 2006 (2240)
||+..-.++...+...|..|+++|.. +..+.+|+.+ +||||+| |++||||.+|..||+.++|.++.+|
T Consensus 1 ~~~~~e~~~~~~L~~~~~~il~~l~~------~~~~~~F~~P-----~pdY~~i-Ik~PmDL~tI~~kl~~~~Y~s~~~f 68 (131)
T 2dkw_A 1 GSSGSSGNTLRELRLFLRDVTKRLAT------DKRFNIFSKP-----VSDYLEV-IKEPMDLSTVITKIDKHNYLTAKDF 68 (131)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHHHHHH------SGGGCTTSSC-----CSSCTTS-CSSCCCHHHHHHHHHTTCCCSSHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHh------CccchhhcCc-----CccHHhH-cCCCcCHHHHHHHHcCCCCCCHHHH
Confidence 34444456678888899999999974 3467899985 9999999 9999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCcH----HHHHHHHHHHHHHHHHHHhCC
Q 000099 2007 VSDVQFMLKGAMQFYGFSHE----VRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2007 ~~DvqLMf~Na~~yn~~~se----v~~dA~~L~~~F~~~~k~~fP 2047 (2240)
..||.|||.||+.||+++|+ +|.+|+.|++.|..+|+..+.
T Consensus 69 ~~D~~Li~~Na~~yN~~~s~~~~~i~~~A~~L~~~~~~~l~~~l~ 113 (131)
T 2dkw_A 69 LKDIDLICSNALEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELD 113 (131)
T ss_dssp HHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999996 589999999999999976665
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=175.07 Aligned_cols=122 Identities=20% Similarity=0.315 Sum_probs=111.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..|..+|... .+.++||||++...++.|.+.|...|+.+..+||+++..+|..+++.|+++... +|++|
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T 92 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVAT 92 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEC
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEC
Confidence 3467999999988763 577999999999999999999999999999999999999999999999976544 78999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++++|||++.+++||+||+|||+..|+|++||++|.|++..+.+|.
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 139 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFV 139 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEE
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEe
Confidence 99999999999999999999999999999999999999887765554
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=177.52 Aligned_cols=121 Identities=21% Similarity=0.225 Sum_probs=110.8
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
...|+..|..+|... .+.++||||++...++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|+
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 457999999988864 567999999999999999999999999999999999999999999999976554 789999
Q ss_pred cccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1406 AGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
++++|||++.+++||+||+|||+..|+|++||++|.|++..+.++.
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 135 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 135 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEE
Confidence 9999999999999999999999999999999999999987766554
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=209.88 Aligned_cols=109 Identities=15% Similarity=0.082 Sum_probs=91.7
Q ss_pred cCCeEEEEecchhHHHHHHHHHHh-----------cCceEEeecCCCCHHHHHHHHHHHhcC--CCCccEEEEecccccc
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQW-----------RQLVYRRIDGTTSLEDRESAIVDFNSH--DSDCFIFLLSIRAAGR 1409 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~-----------rGiky~rLDGsTs~eEReeaIk~FNs~--Ds~~fVfLLSTrAGGe 1409 (2240)
.+.++||||.....++.+.+.|.. .++.+..+||+++.++|..+++.|... .....-+||+|+++++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~ 381 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAET 381 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHh
Confidence 467999999999999999998875 588899999999999999999999711 0123447999999999
Q ss_pred cCCCCCCCeEEEcCC------------------CCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1410 GLNLQSADTVIIYDP------------------DPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1410 GLNLQaADtVIifD~------------------pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
|||++++++||.++. |.+...+.||.||++|. ++-.+|+|++
T Consensus 382 GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~ 441 (773)
T 2xau_A 382 SLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYT 441 (773)
T ss_dssp TCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSC
T ss_pred CcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEec
Confidence 999999999999777 88999999999999998 2334556654
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-15 Score=211.38 Aligned_cols=150 Identities=16% Similarity=0.149 Sum_probs=100.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC-C--C
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL-P--S 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~-P--s 1075 (2240)
.+.|.|.+++.-+ |+.+.|.+++.+||+|||+++...|...+. ....+.+|+|+|.. |+.+-..+|.+.+ + +
T Consensus 926 ~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~-~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLL-QSSEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHH-HCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHH-hCCCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 5778999998654 456788999999999999998777766554 33456899999976 5555556665433 2 5
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhcc----ccCcceEecccccccCCchhHHH-HHhhcc--
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLS----KVDWKYIIIDEAQRMKDRESVLA-RDLDRY-- 1148 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~----kikWd~VIIDEAHrLKN~~SKls-kaLk~L-- 1148 (2240)
+++..+.|......+. ....+|+|+|++.+........ -.+..+|||||+|.+.......+ ..+..+
T Consensus 1002 ~~V~~ltGd~~~~~~~------~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~ 1075 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLKL------LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRY 1075 (1724)
T ss_dssp CCEEECCSCHHHHHHH------HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCcchhh------cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHH
Confidence 6788888875443222 2357999999998743211111 12568999999999975332222 222221
Q ss_pred ------ccceEEEeecC
Q 000099 1149 ------RCQRRLLLTGT 1159 (2240)
Q Consensus 1149 ------ks~~RLLLTGT 1159 (2240)
...+.++||||
T Consensus 1076 i~~~~~~~~riI~lSAT 1092 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSS 1092 (1724)
T ss_dssp HHHTTSSCCEEEEEESC
T ss_pred HHhhcCCCceEEEEeCC
Confidence 23467899999
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-17 Score=179.02 Aligned_cols=123 Identities=25% Similarity=0.349 Sum_probs=97.0
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
..+.|+..|..+|... ..+.++||||++...++.|..+|...|+.+..++|+++..+|..+++.|+.+... +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 4567999999988863 2578999999999999999999999999999999999999999999999976555 78999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++++|||++.+++||+||+|||+..|+||+||++|.|++..|.+++
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 150 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFF 150 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEE
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999877665543
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=182.72 Aligned_cols=141 Identities=28% Similarity=0.314 Sum_probs=110.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Psl 1076 (2240)
..+|++||.+++.+++. +.++||+++||+|||+++++++..+ .+++|||||. .++.||..+|.+| ++
T Consensus 91 ~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~--~~ 158 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (237)
T ss_dssp CCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--CC
Confidence 46899999999987664 4569999999999999998877643 4689999998 6789999999994 45
Q ss_pred e-EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEE
Q 000099 1077 S-CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLL 1155 (2240)
Q Consensus 1077 k-Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLL 1155 (2240)
. +.++.|... ...+|+|+||+.+......+. ..|++|||||||++.+.. ....+..+...++|+
T Consensus 159 ~~v~~~~g~~~------------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~--~~~i~~~~~~~~~l~ 223 (237)
T 2fz4_A 159 EYVGEFSGRIK------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES--YVQIAQMSIAPFRLG 223 (237)
T ss_dssp GGEEEESSSCB------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT--HHHHHHTCCCSEEEE
T ss_pred CeEEEEeCCCC------------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH--HHHHHHhccCCEEEE
Confidence 6 777777543 246899999999987766543 469999999999997653 334455667889999
Q ss_pred eecCCCCCCH
Q 000099 1156 LTGTPLQNDL 1165 (2240)
Q Consensus 1156 LTGTPLQNnL 1165 (2240)
|||||.+++-
T Consensus 224 LSATp~r~D~ 233 (237)
T 2fz4_A 224 LTATFEREDG 233 (237)
T ss_dssp EEESCC----
T ss_pred EecCCCCCCC
Confidence 9999987764
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-16 Score=204.33 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=82.2
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEE--
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI-- 1420 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVI-- 1420 (2240)
.+.++||||+.+..++.|.+.|...|+.+..+||+++.++ |..... -+|++|+++++|||+. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~---~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD---VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC---EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC---cEEEECChHHccCCCC-CcEEEec
Confidence 4679999999999999999999999999999999999764 333222 5899999999999996 99988
Q ss_pred --------EcC-----------CCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1421 --------IYD-----------PDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1421 --------ifD-----------~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+|| .|.++..|+||+||++| |.+.. |.|++
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt 512 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVT 512 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESC
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEe
Confidence 677 78899999999999999 76554 45543
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=171.29 Aligned_cols=119 Identities=21% Similarity=0.307 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccccc
Q 000099 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAG 1408 (2240)
Q Consensus 1329 KLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGG 1408 (2240)
|+..|..++... .+.++||||+....++.|..+|...|+.+..+||+++..+|..+++.|+.+... +|++|++++
T Consensus 17 K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~~ 91 (165)
T 1fuk_A 17 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 91 (165)
T ss_dssp HHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGGT
T ss_pred HHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChhh
Confidence 899999988864 578999999999999999999999999999999999999999999999976554 788999999
Q ss_pred ccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEE
Q 000099 1409 RGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYM 1452 (2240)
Q Consensus 1409 eGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrL 1452 (2240)
+|||++.+++||+||+|||+..|.|++||++|.|+...|.++..
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 135 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVT 135 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEE
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 99999999999999999999999999999999998887765543
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=176.87 Aligned_cols=120 Identities=26% Similarity=0.330 Sum_probs=105.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
...|+..|..+|.. .+.++||||++...++.|..+|...|+.+..++|+++..+|..+++.|+.+... +|++|+
T Consensus 39 ~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEECH
T ss_pred hHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEcC
Confidence 45687777776653 567999999999999999999999999999999999999999999999976554 789999
Q ss_pred cccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1406 AGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
++++|||++.+++||+||+|||+..|+||+||++|.|++..+.++.
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~ 158 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFI 158 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEE
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEE
Confidence 9999999999999999999999999999999999999988765543
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4e-16 Score=202.38 Aligned_cols=107 Identities=22% Similarity=0.273 Sum_probs=94.3
Q ss_pred eEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCC-
Q 000099 1346 RVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDP- 1424 (2240)
Q Consensus 1346 KVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~- 1424 (2240)
..||||.....++.+...|...++.+..+||+++.++|..+++.|+.+++.+. +|++|+++++|||+ .+++||++|.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~-VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCK-ILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCC-EEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeE-EEEeCcHHHCCcCc-CccEEEECCcc
Confidence 34888999999999999999999999999999999999999999997444433 69999999999999 9999999999
Q ss_pred -------------CCChhhHHHHhhhhhccCCc-ceEEEEEEeh
Q 000099 1425 -------------DPNPKNEEQAVARAHRIGQK-REVKVIYMEA 1454 (2240)
Q Consensus 1425 -------------pWNP~~d~QAiGRAhRIGQK-KeV~VyrLvT 1454 (2240)
|++...+.|+.||++|.|.. ..-.||.+..
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNH 443 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESST
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEec
Confidence 88999999999999999977 3456666644
|
| >2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-17 Score=192.52 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCC-CHHHHHHHHHHHHH
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYN-GVMELVSDVQFMLK 2015 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~-~v~ef~~DvqLMf~ 2015 (2240)
+.++..|..+|..+. +.||.+|+.|+.+|+++.+||||+| |++||||.||++|| .+|. ++.+|+.||+|||+
T Consensus 27 p~~~~~~~~~L~~~~----~~~r~~~~~F~~p~~~~~~PdY~~i-Ik~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~ 99 (311)
T 2r0y_A 27 PKFNRFISFTLDVLI----DKYKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTK 99 (311)
T ss_dssp TTHHHHHHHHHHHHH----HHSHHHHGGGSSCCCTTTCHHHHHH-CSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----HcCCchhHHhcCCCCcccCCChHHH-cCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHH
Confidence 556778888887775 3699999999999999999999999 99999999999999 6676 89999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2016 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2016 Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||+.||+++|.||++|+.|+++|...|...
T Consensus 100 Na~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 100 NCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988765
|
| >2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.1e-17 Score=194.74 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCC-CHHHHHHHHHHHHH
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYN-GVMELVSDVQFMLK 2015 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~-~v~ef~~DvqLMf~ 2015 (2240)
+.+...|..+|..|. +.|+.+++.|+.+|++.++||||+| |++||||.+|++|| .+|. ++.+|+.||.|||+
T Consensus 77 ~~~~~~~~~~l~~l~----~~~~~~~~~F~~p~~~~~~PdY~~i-Ik~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~ 149 (361)
T 2r10_A 77 PKFNRFISFTLDVLI----DKYKDIFKDFIKLPSRKFHPQYYYK-IQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTK 149 (361)
T ss_dssp TTHHHHHHHHHHHHH----HHTHHHHGGGSSCCCTTTCTTHHHH-CSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH----HcCCcccHHhcCCCCcccCCChHhh-cCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHH
Confidence 556778888887774 4689999999999999999999999 99999999999999 5666 79999999999999
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2016 GAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2016 Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||+.||+++|.||.+|..|+++|...|...
T Consensus 150 Na~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 150 NCQAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999988765
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=6.3e-16 Score=167.88 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=101.0
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccc
Q 000099 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAA 1407 (2240)
Q Consensus 1328 GKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAG 1407 (2240)
.|+..|..++..+ .+.++||||++...++.|..+|...|+.+..+||+++..+|..+++.|+++... +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 3788888777653 467999999999999999999999999999999999999999999999976544 78999999
Q ss_pred cccCCCCCCCeEEEcCCC------CChhhHHHHhhhhhccCCcceEEEE
Q 000099 1408 GRGLNLQSADTVIIYDPD------PNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1408 GeGLNLQaADtVIifD~p------WNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
++|||++.+++||+||+| |++..|+||+||++|.|+...+.++
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~ 143 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNM 143 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEE
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999 7779999999999999976555333
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-15 Score=206.56 Aligned_cols=149 Identities=19% Similarity=0.128 Sum_probs=100.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC--------CCCCeEEEechH-HHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG--------NYGPHLIIVPNA-VLVNWKSELH 1070 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg--------~~GP~LIVVP~S-LL~QW~~Ef~ 1070 (2240)
+|.+.|.+++..++ +.+.|.+++.+||+|||+++...|...+.... ..+.+|+|+|.. |+.+-.++|.
T Consensus 79 ~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 79 TLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp BCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78999999987654 46788999999999999998777665543221 234689999965 6666777777
Q ss_pred HHCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh------hhhccccCcceEecccccccCCchhHH-
Q 000099 1071 KWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD------RSKLSKVDWKYIIIDEAQRMKDRESVL- 1141 (2240)
Q Consensus 1071 Kw~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD------~s~L~kikWd~VIIDEAHrLKN~~SKl- 1141 (2240)
+.+. +++|..++|......+ .....+|+|||++.+..- ...+ ....+|||||+|.+.+.....
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~------~~~~~~IlVtTpEkld~llr~~~~~~~l--~~v~~vIiDEvH~l~d~RG~~l 227 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE------EISATQIIVCTPEKWDIITRKGGERTYT--QLVRLIILDEIHLLHDDRGPVL 227 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT------TGGGCSEEEECHHHHHHHTTSSTTHHHH--TTEEEEEETTGGGGGSTTHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc------ccCCCCEEEECHHHHHHHHcCCccchhh--cCcCEEEEecchhcCCccHHHH
Confidence 6654 4678888886432211 134679999999986322 1122 246899999999886522111
Q ss_pred ----HHHhh---cc-ccceEEEeecC
Q 000099 1142 ----ARDLD---RY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1142 ----skaLk---~L-ks~~RLLLTGT 1159 (2240)
.+.+. .. ..-++++||||
T Consensus 228 E~~l~rl~~~~~~~~~~~riI~LSAT 253 (1724)
T 4f92_B 228 EALVARAIRNIEMTQEDVRLIGLSAT 253 (1724)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEECS
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEecc
Confidence 22221 12 23468999999
|
| >3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-16 Score=182.60 Aligned_cols=104 Identities=13% Similarity=0.153 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
..+...|..||++|.. +..+++|+.+|++..+||||++ |++||||.+|..||+.+.|.++.+|+.||.|||.|
T Consensus 13 ~~l~~~l~~il~~l~~------~~~~~~F~~pv~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (265)
T 3uv5_A 13 VTLSSILESIINDMRD------LPNTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 85 (265)
T ss_dssp HHHHHHHHHHHHHHHT------STTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc------CCCchhhhCCCChhhcCCHHHH-hCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhh
Confidence 3778899999999974 4569999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHhCC
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIAFP 2047 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k~~fP 2047 (2240)
|+.||+++|.||.+|..|+++|...++..-+
T Consensus 86 a~~yN~~~s~i~~~A~~l~~~~~~~~~~~~~ 116 (265)
T 3uv5_A 86 SATYNGPKHSLTQISQSMLDLCDEKLKEKED 116 (265)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987643
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=171.23 Aligned_cols=122 Identities=20% Similarity=0.324 Sum_probs=109.3
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..|..++.. ..+.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+..+ +|++|
T Consensus 14 ~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT 88 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVAT 88 (212)
T ss_dssp CTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEEC
T ss_pred CHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEec
Confidence 346799999999874 4578999999999999999999999999999999999999999999999976554 79999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++++|||++.+++||+||+||++..|.||+||++|.|+...+.+++
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~ 135 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLY 135 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEE
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEE
Confidence 99999999999999999999999999999999999999887665544
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-15 Score=164.78 Aligned_cols=154 Identities=21% Similarity=0.175 Sum_probs=114.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH---hCCCCCeEEEech-HHHHHHHHHHHHHCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF---KGNYGPHLIIVPN-AVLVNWKSELHKWLPS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~---kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Ps 1075 (2240)
.|+|||.+++.+++. +.++|++.+||+|||++++..+...+.. ......+|||||. .++.||.+++.++++.
T Consensus 23 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 23 TPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 799999999998876 6789999999999999877666554321 1234679999998 5789999999999988
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhccc-c
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-C 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk-s 1150 (2240)
+.+..++|+....... .......+|+|+|++.+..... .+....+++|||||||++.+. ...+...+..+. .
T Consensus 99 ~~~~~~~~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 175 (207)
T 2gxq_A 99 LKVVAVYGGTGYGKQK---EALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175 (207)
T ss_dssp SCEEEECSSSCSHHHH---HHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ceEEEEECCCChHHHH---HHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCcc
Confidence 8888888765433221 1223468999999999876432 334457899999999998543 334444444554 4
Q ss_pred ceEEEeecCC
Q 000099 1151 QRRLLLTGTP 1160 (2240)
Q Consensus 1151 ~~RLLLTGTP 1160 (2240)
...+++|||+
T Consensus 176 ~~~i~~SAT~ 185 (207)
T 2gxq_A 176 RQTLLFSATL 185 (207)
T ss_dssp SEEEEECSSC
T ss_pred CeEEEEEEec
Confidence 5689999997
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-14 Score=184.94 Aligned_cols=121 Identities=17% Similarity=0.158 Sum_probs=102.5
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..|...+..+...+.+|||||.....++.|...|...|+++..|+|.....+|.-+...|.. +. ++|+|
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~---VtVAT 529 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM---VTIAT 529 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC---EEEEE
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce---EEEEc
Confidence 34568888888888877789999999999999999999999999999999998544444444445543 33 79999
Q ss_pred ccccccCCCC--------CCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1405 RAAGRGLNLQ--------SADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1405 rAGGeGLNLQ--------aADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+.+|+|+|+. +..+||+||.|-++..|.|++||++|.|.+.....|
T Consensus 530 dmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~f 583 (822)
T 3jux_A 530 NMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFF 583 (822)
T ss_dssp TTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEE
T ss_pred chhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEE
Confidence 9999999998 567999999999999999999999999988876544
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=167.73 Aligned_cols=131 Identities=20% Similarity=0.260 Sum_probs=94.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---CCCCCeEEEechH-HHHH-HHHHHHHHC
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---GNYGPHLIIVPNA-VLVN-WKSELHKWL 1073 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k---g~~GP~LIVVP~S-LL~Q-W~~Ef~Kw~ 1073 (2240)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++... ...+++|||||.. ++.| |.+++.+|.
T Consensus 32 ~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4899999999998875 67899999999999999998887765432 2356899999985 6688 999999987
Q ss_pred C-CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--------ccccCcceEecccccccCC
Q 000099 1074 P-SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--------LSKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1074 P-slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--------L~kikWd~VIIDEAHrLKN 1136 (2240)
. .+.+..+.|........ .......+|+|+||+.+...... +....|++|||||||++..
T Consensus 108 ~~~~~v~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISF---PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp TTTSCEEECCC---CCCCH---HHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred ccCceEEEEeCCcccchhH---HhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 6 47777777765433211 11123589999999999765433 3345789999999999964
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=166.31 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=114.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL---PS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~---Ps 1075 (2240)
.|+|||.+++..++. +.++|++++||+|||++++..+...+.......++|||||. .++.||.+++.+|. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998886 67899999999999999887776655322333489999997 57889999999986 46
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc-h--hHHHHHhhccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR-E--SVLARDLDRYR- 1149 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~-~--SKlskaLk~Lk- 1149 (2240)
+++.+++|+....... ........+|+|+|++.+.... ..+....+++|||||||++... . ..+...+..+.
T Consensus 112 ~~v~~~~g~~~~~~~~--~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 189 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDE--EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 189 (220)
T ss_dssp CCEEEESCCSCHHHHH--HHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred ceEEEEeCCCChHHHH--HHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCC
Confidence 8888888875443222 1233456799999999987543 2233457899999999999642 1 22333333443
Q ss_pred cceEEEeecCCCC
Q 000099 1150 CQRRLLLTGTPLQ 1162 (2240)
Q Consensus 1150 s~~RLLLTGTPLQ 1162 (2240)
..++++|||||-.
T Consensus 190 ~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 190 EKQVMMFSATLSK 202 (220)
T ss_dssp SSEEEEEESCCCT
T ss_pred cCeEEEEEeecCH
Confidence 4568999999843
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=179.61 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=103.0
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000099 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrA 1406 (2240)
.+++..|...|......+.+|||||.....++.|.++|...|+.+..+||+++..+|.++++.|+.+... +|++|++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccCh
Confidence 3566666666777777899999999999999999999999999999999999999999999999975544 7999999
Q ss_pred ccccCCCCCCCeEEEcCC-----CCChhhHHHHhhhhhccC
Q 000099 1407 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRIG 1442 (2240)
Q Consensus 1407 GGeGLNLQaADtVIifD~-----pWNP~~d~QAiGRAhRIG 1442 (2240)
+++|||++.+++||++|. ++++..|+|++||++|.|
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 539 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC
Confidence 999999999999999998 899999999999999986
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.9e-17 Score=176.03 Aligned_cols=120 Identities=18% Similarity=0.257 Sum_probs=108.6
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000099 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrA 1406 (2240)
..|+..|..++.. ..+.++||||++...++.|.++|...|+.+..+||+++..+|..+++.|+++... +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 4588888888775 3467999999999999999999999999999999999999999999999975544 7899999
Q ss_pred ccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1407 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1407 GGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++|||++.+++||+||+|||+..|+|++||++|.|++..|.++.
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 999999999999999999999999999999999999988775554
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.2e-15 Score=164.47 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=115.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC----
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P---- 1074 (2240)
+++|||.+++.+++. +.++|++.+||+|||++++..+...+........+|||||+. ++.||.+++.+++.
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 699999999998886 678999999999999987776665543333456899999975 77899999998865
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhcc
Q 000099 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRY 1148 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~L 1148 (2240)
.+.+..+.|+....... .......+|+|+|++.+..... .+....+++|||||||++.+. ...+...+..+
T Consensus 102 ~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKAL---EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp GGCCCEEEECCCSHHHHTT---CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred ccceEEEEEeCCCCHHHHH---HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhC
Confidence 46777777765443221 1113467999999999876432 233446899999999998643 23444555555
Q ss_pred c-cceEEEeecCCCCCCHHHH
Q 000099 1149 R-CQRRLLLTGTPLQNDLKEL 1168 (2240)
Q Consensus 1149 k-s~~RLLLTGTPLQNnL~EL 1168 (2240)
. ...+++||||+ .+.+.++
T Consensus 179 ~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 179 PKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp CTTCEEEEEESCC-CGGGHHH
T ss_pred CcccEEEEEecCC-CHHHHHH
Confidence 4 45689999997 4444443
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=159.57 Aligned_cols=154 Identities=14% Similarity=0.125 Sum_probs=113.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC---C
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP---S 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P---s 1075 (2240)
+|+|||.+++..++. +.+.|+..+||+|||++++..+...+.......++|||||.. ++.||..++.+++. +
T Consensus 25 ~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 799999999998875 678999999999999988766655443333445799999975 77899999998864 6
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCch--hHHHHHhhccc-c
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRYR-C 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~Lk-s 1150 (2240)
+.+..+.|........ .......+|+|+|++.+..... .+...++++|||||||++.... ..+...+..+. .
T Consensus 101 ~~~~~~~g~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 177 (206)
T 1vec_A 101 AKVMATTGGTNLRDDI---MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp CCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred ceEEEEeCCccHHHHH---HhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCcc
Confidence 7788888776544332 1224578999999999865432 2333478999999999986532 23334444444 4
Q ss_pred ceEEEeecCC
Q 000099 1151 QRRLLLTGTP 1160 (2240)
Q Consensus 1151 ~~RLLLTGTP 1160 (2240)
..+++||||+
T Consensus 178 ~~~l~~SAT~ 187 (206)
T 1vec_A 178 RQILLYSATF 187 (206)
T ss_dssp CEEEEEESCC
T ss_pred ceEEEEEeeC
Confidence 5789999998
|
| >3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.5e-16 Score=182.53 Aligned_cols=102 Identities=14% Similarity=0.172 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
..++..|..||++|. .+..+.+|+.++++..+||||++ |++||||.||..||+.+.|.++.+|..||.|||+|
T Consensus 46 ~~l~~~~~~il~~l~------~~~~a~~F~~pV~~~~~pdY~~i-Ik~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~N 118 (292)
T 3aad_A 46 VTLSSILESIINDMR------DLPNTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKN 118 (292)
T ss_dssp HHHHHHHHHHHHHHS------SSTTCGGGSSSCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------hCCcchhhcCCCCchhcccHHHH-cCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHH
Confidence 345778999999996 35789999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
|+.||+++|.+|.+|..|+++|..+++..
T Consensus 119 a~~yN~~~s~i~~~A~~L~~~~~~~~~~~ 147 (292)
T 3aad_A 119 SATYNGPKHSLTQISQSMLDLCDEKLKEK 147 (292)
T ss_dssp HHHHTCSSSHHHHHHTHHHHTTTTTGGGS
T ss_pred HHHHcCCchHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999888764
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=163.52 Aligned_cols=153 Identities=16% Similarity=0.163 Sum_probs=112.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHC---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWL---PS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~---Ps 1075 (2240)
.|+|||.+++..++. +.+.|++.+||+|||++++..+...+.......++|||||+ .|+.||.+++.++. ++
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 599999999998775 67899999999999998766555443323445689999997 57899999999986 36
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc---hhHHHHHhhccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYR- 1149 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~---~SKlskaLk~Lk- 1149 (2240)
+++.++.|+....... ......+|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..+.
T Consensus 122 ~~~~~~~g~~~~~~~~----~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~ 197 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDK----TRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA 197 (230)
T ss_dssp CCEEEECTTSCHHHHH----HHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS
T ss_pred ceEEEEeCCCCHHHHH----HhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC
Confidence 7888888865443221 12346899999999987643 2333457889999999999543 333444455554
Q ss_pred cceEEEeecCC
Q 000099 1150 CQRRLLLTGTP 1160 (2240)
Q Consensus 1150 s~~RLLLTGTP 1160 (2240)
..++++||||+
T Consensus 198 ~~~~l~lSAT~ 208 (230)
T 2oxc_A 198 SKQMLAVSATY 208 (230)
T ss_dssp SCEEEEEESCC
T ss_pred CCeEEEEEecc
Confidence 45689999996
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=162.42 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=113.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh----CCCCCeEEEech-HHHHHHHHHHHHHCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK----GNYGPHLIIVPN-AVLVNWKSELHKWLP 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k----g~~GP~LIVVP~-SLL~QW~~Ef~Kw~P 1074 (2240)
.|+|||.+++.+++. +.++|++.+||+|||++++..+...+... .....+|||||+ .++.||..++.+++.
T Consensus 47 ~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp BCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 799999999998875 67899999999999999877666544321 234579999997 578899999999986
Q ss_pred C--CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh---hccccCcceEecccccccCCc--hhHHHHHhhc
Q 000099 1075 S--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (2240)
Q Consensus 1075 s--lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~ 1147 (2240)
. +.+..++|+....... ......+|+|+|++.+..... .+...+|++|||||||++.+. ...+...+..
T Consensus 123 ~~~~~~~~~~g~~~~~~~~----~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEA----ERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp TSSCCEEEECCC--CHHHH----HHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHT
T ss_pred CCCeeEEEEECCCCHHHHH----HhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHh
Confidence 4 6777788765543222 122578999999999976532 234457899999999998653 3445555556
Q ss_pred cc-cceEEEeecCC
Q 000099 1148 YR-CQRRLLLTGTP 1160 (2240)
Q Consensus 1148 Lk-s~~RLLLTGTP 1160 (2240)
+. ...+++||||+
T Consensus 199 ~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 199 LPKKRQTLLFSATQ 212 (236)
T ss_dssp SCTTSEEEEEESSC
T ss_pred CCCCCeEEEEEeeC
Confidence 64 44589999997
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=164.83 Aligned_cols=155 Identities=19% Similarity=0.172 Sum_probs=115.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--s 1075 (2240)
..|++||.+++..++. +.+.|++.+||+|||++++..+...+........+|||||+. ++.||.++|.+++. +
T Consensus 64 ~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 3799999999998875 678999999999999998777766555455556799999975 77899999999865 5
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh---hccccCcceEecccccccCCc--hhHHHHHhhccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR- 1149 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk- 1149 (2240)
+.+.++.|+....... .......+|+|+|++.+..... .+....+++|||||||++.+. ...+...+..+.
T Consensus 140 ~~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~ 216 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQS---LALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPR 216 (249)
T ss_dssp CCEEEECTTSCHHHHH---HHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS
T ss_pred eeEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCC
Confidence 6777777765443322 1224578999999999976532 233446899999999998653 333445555554
Q ss_pred cceEEEeecCC
Q 000099 1150 CQRRLLLTGTP 1160 (2240)
Q Consensus 1150 s~~RLLLTGTP 1160 (2240)
...+++||||+
T Consensus 217 ~~~~l~~SAT~ 227 (249)
T 3ber_A 217 DRKTFLFSATM 227 (249)
T ss_dssp SSEEEEEESSC
T ss_pred CCeEEEEeccC
Confidence 45689999997
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=171.31 Aligned_cols=122 Identities=20% Similarity=0.320 Sum_probs=106.7
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..|.+++.... +.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+..+ +|++|
T Consensus 11 ~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT 85 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVAT 85 (300)
T ss_dssp CSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEEC
T ss_pred CHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEe
Confidence 34679999999987643 88999999999999999999999999999999999999999999999986655 79999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++++|||++.+++||+||+||++..|+|++||++|.|+...+.+++
T Consensus 86 ~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 86 DVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp STTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEE
T ss_pred chhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEe
Confidence 99999999999999999999999999999999999999887665554
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-14 Score=158.74 Aligned_cols=153 Identities=12% Similarity=0.099 Sum_probs=107.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.|+|||.+++..++. +.++|++.+||+|||++++..+...+........+|||||.. ++.||.+++.+++. ++
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 799999999998875 678999999999999986555544443334456899999975 77899999999975 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhccc-cc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYR-CQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lk-s~ 1151 (2240)
.+..+.|+....... ......+|+|+|++.+..... .+...++++|||||||++.+. ...+...+..+. ..
T Consensus 112 ~~~~~~g~~~~~~~~----~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~ 187 (224)
T 1qde_A 112 KVHACIGGTSFVEDA----EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187 (224)
T ss_dssp CEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEeCCcchHHHH----hcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccC
Confidence 777777765433221 112348999999999875432 233346899999999998542 233444444443 44
Q ss_pred eEEEeecCC
Q 000099 1152 RRLLLTGTP 1160 (2240)
Q Consensus 1152 ~RLLLTGTP 1160 (2240)
++++||||+
T Consensus 188 ~~i~lSAT~ 196 (224)
T 1qde_A 188 QVVLLSATM 196 (224)
T ss_dssp EEEEEESSC
T ss_pred eEEEEEeec
Confidence 689999997
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.1e-14 Score=161.20 Aligned_cols=155 Identities=22% Similarity=0.263 Sum_probs=112.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---------CCCCeEEEechH-HHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG---------NYGPHLIIVPNA-VLVNWKSE 1068 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg---------~~GP~LIVVP~S-LL~QW~~E 1068 (2240)
..|+|||.+++.+++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |+.||..+
T Consensus 44 ~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 3799999999998876 678999999999999998877766553221 235799999975 78999999
Q ss_pred HHHHCC--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHH
Q 000099 1069 LHKWLP--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLA 1142 (2240)
Q Consensus 1069 f~Kw~P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKls 1142 (2240)
+.+|.. .+.+..+.|+....... .......+|+|+|++.+..... .+....+++|||||||++.+. ...+.
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~ 196 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHSQI---REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIR 196 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHH---HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred HHHHhccCCceEEEEECCCCHHHHH---HHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHH
Confidence 999875 36677777765443322 1223568999999999976532 233346789999999998643 33444
Q ss_pred HHhhcc--c---cceEEEeecCC
Q 000099 1143 RDLDRY--R---CQRRLLLTGTP 1160 (2240)
Q Consensus 1143 kaLk~L--k---s~~RLLLTGTP 1160 (2240)
..+..+ . ...+++|||||
T Consensus 197 ~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 197 KIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHHSSCCCCGGGCEEEEEESSC
T ss_pred HHHhhccCCCCCCcEEEEEEEeC
Confidence 455432 2 34589999997
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=161.20 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=108.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.|++||.+++..++. +.++|++.+||+|||++++..+...+........+|||||+. ++.||..++.+++. .+
T Consensus 52 ~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 699999999998875 678999999999999987776665543333456899999975 78899999999975 45
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCC--chhHHHHHhhccc-cc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYR-CQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN--~~SKlskaLk~Lk-s~ 1151 (2240)
.+..+.|+....... .......++|+|+|++.+.... ..+....+++|||||||++.+ ....+...+..+. ..
T Consensus 128 ~~~~~~g~~~~~~~~--~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 205 (237)
T 3bor_A 128 TCHACIGGTNVRNEM--QKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 205 (237)
T ss_dssp CEEEECC---------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEEEECCCchHHHH--HHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCC
Confidence 666666665433221 1223345899999999987643 223344689999999999843 3344555555554 34
Q ss_pred eEEEeecCC
Q 000099 1152 RRLLLTGTP 1160 (2240)
Q Consensus 1152 ~RLLLTGTP 1160 (2240)
..++||||+
T Consensus 206 ~~i~~SAT~ 214 (237)
T 3bor_A 206 QVVLLSATM 214 (237)
T ss_dssp EEEEECSSC
T ss_pred eEEEEEEec
Confidence 679999997
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-12 Score=167.65 Aligned_cols=112 Identities=21% Similarity=0.217 Sum_probs=101.8
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000099 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrA 1406 (2240)
.+++..|...|......+.+|||||.....++.|.++|...|+.+..+||.++..+|.++++.|+.+... +|++|++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecch
Confidence 3566666666666667889999999999999999999999999999999999999999999999975544 7999999
Q ss_pred ccccCCCCCCCeEEEcCC-----CCChhhHHHHhhhhhcc
Q 000099 1407 AGRGLNLQSADTVIIYDP-----DPNPKNEEQAVARAHRI 1441 (2240)
Q Consensus 1407 GGeGLNLQaADtVIifD~-----pWNP~~d~QAiGRAhRI 1441 (2240)
+++|||++.+++||++|. ++++..|+|++||++|.
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~ 544 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 544 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC
Confidence 999999999999999998 89999999999999997
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=151.39 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=108.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHH------hCCCCCeEEEechH-HHHHHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEF------KGNYGPHLIIVPNA-VLVNWKSELHKW 1072 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~------kg~~GP~LIVVP~S-LL~QW~~Ef~Kw 1072 (2240)
+++|||.+++..++. +.+.|+..+||+|||+.++..+...+.. ......+|||||+. |+.||.+++.++
T Consensus 42 ~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 799999999988875 7789999999999999887766554321 12445789999976 778999999998
Q ss_pred C-CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHHHHhhc
Q 000099 1073 L-PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (2240)
Q Consensus 1073 ~-PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~ 1147 (2240)
. .++.+..++|+....... ......++|+|+|++.+.... ..+...++++|||||||++.+. ...+...+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 194 (228)
T 3iuy_A 118 SYKGLKSICIYGGRNRNGQI---EDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLD 194 (228)
T ss_dssp CCTTCCEEEECC------CH---HHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHH
T ss_pred cccCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHh
Confidence 5 467777777765433221 122356899999999987643 2233346899999999998643 2344444555
Q ss_pred cc-cceEEEeecCC
Q 000099 1148 YR-CQRRLLLTGTP 1160 (2240)
Q Consensus 1148 Lk-s~~RLLLTGTP 1160 (2240)
+. ....+++|||.
T Consensus 195 ~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 195 VRPDRQTVMTSATW 208 (228)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCcCCeEEEEEeeC
Confidence 54 34679999995
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-13 Score=152.00 Aligned_cols=155 Identities=19% Similarity=0.192 Sum_probs=107.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechH-HHHHHHHHHHHHCCC--
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNA-VLVNWKSELHKWLPS-- 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps-- 1075 (2240)
.++|||.+++..++. +.+.|+..+||+|||++++..+...+... .....+|||||+. |+.||.+++.+++..
T Consensus 51 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 699999999988775 67899999999999999877665554322 2334699999976 788999999999764
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh----hccccCcceEecccccccCCc-----hhHHHHHhh
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS----KLSKVDWKYIIIDEAQRMKDR-----ESVLARDLD 1146 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s----~L~kikWd~VIIDEAHrLKN~-----~SKlskaLk 1146 (2240)
+.+..+.|........ .......++|+|+|++.+..... .+...++++|||||||++... ...+...+.
T Consensus 127 ~~~~~~~~~~~~~~~~--~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKKF--GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFL 204 (245)
T ss_dssp CCEECCCHHHHHHTTT--STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHH
T ss_pred ceEEEEecCccHHHHh--hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHH
Confidence 5555555543322111 11224567999999999976532 233446899999999998542 223333333
Q ss_pred cc--ccceEEEeecCC
Q 000099 1147 RY--RCQRRLLLTGTP 1160 (2240)
Q Consensus 1147 ~L--ks~~RLLLTGTP 1160 (2240)
.+ ...+.++||||+
T Consensus 205 ~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 205 ACTSHKVRRAMFSATF 220 (245)
T ss_dssp HCCCTTCEEEEEESSC
T ss_pred hcCCCCcEEEEEeccC
Confidence 33 234689999997
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=148.13 Aligned_cols=154 Identities=18% Similarity=0.203 Sum_probs=111.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-----CCCCCeEEEechH-HHHHHHHHHHHHC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-----GNYGPHLIIVPNA-VLVNWKSELHKWL 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-----g~~GP~LIVVP~S-LL~QW~~Ef~Kw~ 1073 (2240)
.++|||.+++..++. +.+.|+..+||+|||+.++..+...+... .....+|||||+. |+.||.+++.+++
T Consensus 51 ~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 699999999988876 67899999999999999877766555422 2345789999976 6788998888875
Q ss_pred C--CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhc
Q 000099 1074 P--SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (2240)
Q Consensus 1074 P--slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~ 1147 (2240)
. ++.+..++|+....... .......+|+|+|++.+..... .+...++++|||||||++.+. ...+...+..
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQI---RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHH---HHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred hhcCceEEEEECCCChHHHH---HHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 3 56777777765443222 1223468999999999876432 233347889999999998643 3334444555
Q ss_pred cc-cceEEEeecCC
Q 000099 1148 YR-CQRRLLLTGTP 1160 (2240)
Q Consensus 1148 Lk-s~~RLLLTGTP 1160 (2240)
+. ....+++|||.
T Consensus 204 ~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 204 IRPDRQTLMWSATW 217 (242)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCccceEEEEEeec
Confidence 53 44689999996
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=9.1e-13 Score=152.14 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=111.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC----CCCCeEEEechH-HHHHHHHHHHHHCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG----NYGPHLIIVPNA-VLVNWKSELHKWLP 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg----~~GP~LIVVP~S-LL~QW~~Ef~Kw~P 1074 (2240)
.|+|+|.+++..++. +.+.|++.+||+|||++++..+...+.... ....+|||||+. |+.||..++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 699999999988876 577899999999999998777766554321 345799999975 77899999999975
Q ss_pred C--CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh---ccccCcceEecccccccCCc--hhHHHHHhhc
Q 000099 1075 S--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK---LSKVDWKYIIIDEAQRMKDR--ESVLARDLDR 1147 (2240)
Q Consensus 1075 s--lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~---L~kikWd~VIIDEAHrLKN~--~SKlskaLk~ 1147 (2240)
. +.+..+.|........ .......+|+|+|++.+...... +...++++|||||||++... ...+...+..
T Consensus 152 ~~~~~~~~~~g~~~~~~~~---~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRSAEA---QKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TCCSCEEEECSSSCHHHHH---HHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred hcCceEEEEECCCCHHHHH---HHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 3 5666666655433222 11234589999999998764322 33346899999999998643 3334444455
Q ss_pred cc-cceEEEeecCC
Q 000099 1148 YR-CQRRLLLTGTP 1160 (2240)
Q Consensus 1148 Lk-s~~RLLLTGTP 1160 (2240)
+. ....++||||+
T Consensus 229 ~~~~~q~l~~SAT~ 242 (262)
T 3ly5_A 229 LPTRRQTMLFSATQ 242 (262)
T ss_dssp SCSSSEEEEECSSC
T ss_pred CCCCCeEEEEEecC
Confidence 54 35689999997
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.3e-11 Score=152.03 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=68.4
Q ss_pred HHHHHHHHHH-HhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccc
Q 000099 1331 WILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGR 1409 (2240)
Q Consensus 1331 elLdrIL~kL-~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGe 1409 (2240)
..+...|..+ .....++|||+.....++.+.+.|.. +. +.+.|.. .+|.++++.|+.+ .. ..|.+.+....+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~-~~-il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG-KY-LVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS-CC-EEEEEC------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC-Ce-EEEEEecCceec
Confidence 3344444444 34567999999999999999888864 33 3445554 4688999999863 22 122348899999
Q ss_pred cCCCCC----CCeEEEcCCCC-Ch-----------------------------hhHHHHhhhhhccCCcceEEE
Q 000099 1410 GLNLQS----ADTVIIYDPDP-NP-----------------------------KNEEQAVARAHRIGQKREVKV 1449 (2240)
Q Consensus 1410 GLNLQa----ADtVIifD~pW-NP-----------------------------~~d~QAiGRAhRIGQKKeV~V 1449 (2240)
|||+++ +.+||+++.|+ +| ....|++||+-|--...-|.+
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~ 516 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIY 516 (540)
T ss_dssp ---------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEE
T ss_pred ceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEE
Confidence 999997 89999999996 33 234599999999765555543
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1e-11 Score=146.57 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=107.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---P 1074 (2240)
..++++|..++..++. ..+.+.|++.+||+|||++++..+...+........+|||||+. |..|+...+.++. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 3799999999987764 12378899999999999987765555443333444799999977 6678877777765 5
Q ss_pred CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh---hccccCcceEecccccccCC---chhHHHHHhhcc
Q 000099 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS---KLSKVDWKYIIIDEAQRMKD---RESVLARDLDRY 1148 (2240)
Q Consensus 1075 slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s---~L~kikWd~VIIDEAHrLKN---~~SKlskaLk~L 1148 (2240)
.+.+.++.|....... .....+|+|+|++.+..... .+...++.+|||||||++.+ ....+...+..+
T Consensus 191 ~~~~~~~~~~~~~~~~------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~ 264 (300)
T 3fmo_B 191 ELKLAYAVRGNKLERG------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (300)
T ss_dssp TCCEEEESTTCCCCTT------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS
T ss_pred CcEEEEEeCCccHhhh------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC
Confidence 6777777775543211 13567999999999976542 33334788999999999864 122233333344
Q ss_pred c-cceEEEeecCC
Q 000099 1149 R-CQRRLLLTGTP 1160 (2240)
Q Consensus 1149 k-s~~RLLLTGTP 1160 (2240)
. ....+++|||+
T Consensus 265 ~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 265 PRNCQMLLFSATF 277 (300)
T ss_dssp CTTCEEEEEESCC
T ss_pred CCCCEEEEEeccC
Confidence 3 34589999997
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-10 Score=151.13 Aligned_cols=148 Identities=22% Similarity=0.235 Sum_probs=95.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~ 1073 (2240)
|...+|-|..|+--++. +. |....||+|||++++..+. +.... ...++||||+..|. .|...|.+++
T Consensus 77 G~~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~-L~aL~--G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVA-LNALT--GKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHH-HHHTT--CSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHH-HHHHh--CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 34677889999877664 33 8889999999998755543 22212 23689999998653 3777777766
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHH----Hhh-----hhcccc---CcceEecccccccCCchhHH
Q 000099 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIM----YDR-----SKLSKV---DWKYIIIDEAQRMKDRESVL 1141 (2240)
Q Consensus 1074 PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~----kD~-----s~L~ki---kWd~VIIDEAHrLKN~~SKl 1141 (2240)
++++.++.|+.....+. .....+|++.|.+.|- ++. ..+... .+.++||||+|.|.-
T Consensus 148 -GLsv~~i~Gg~~~~~r~-----~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi----- 216 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAERR-----KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI----- 216 (997)
T ss_dssp -TCCEEECCTTCCHHHHH-----HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT-----
T ss_pred -CCeEEEEeCCCCHHHHH-----HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH-----
Confidence 57777766654322111 1235799999998883 221 122333 678999999998742
Q ss_pred HHHhhccccceEEEeecCCCCCCHHHHHHHHh
Q 000099 1142 ARDLDRYRCQRRLLLTGTPLQNDLKELWSLLN 1173 (2240)
Q Consensus 1142 skaLk~Lks~~RLLLTGTPLQNnL~ELwSLLn 1173 (2240)
.. ...-|++|| |+... ..+|..++
T Consensus 217 ----De--artPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 217 ----DE--ARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp ----SS--TTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred ----hC--CCCCeeeeC-CCccc-hHHHHHHH
Confidence 11 122389999 87766 44544443
|
| >3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A | Back alignment and structure |
|---|
Probab=99.28 E-value=8.7e-12 Score=138.31 Aligned_cols=103 Identities=21% Similarity=0.384 Sum_probs=90.4
Q ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHH
Q 000099 1935 MSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFML 2014 (2240)
Q Consensus 1935 l~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf 2014 (2240)
|+..+++.++.||..|. .+.....|+. | . ++.||||.+|++||+.++|.++.+|++||.|||
T Consensus 72 ~~~el~~~l~~vl~~L~------~~~~s~~~~~---------y-~--~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf 133 (183)
T 3lqh_A 72 LEKELQISLKQVLTALL------NSRTTSHLLR---------Y-R--QQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKII 133 (183)
T ss_dssp HHHHHHHHHHHHHHHHH------TCHHHHHHHT---------C-C--C--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH------hccccHhhhh---------h-h--hcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 56788888999999887 4556777766 3 3 499999999999999999999999999999999
Q ss_pred HhhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCCCChhHHhh
Q 000099 2015 KGAMQFYGFSHEVRSEARKVHDLFFDLLKIAFPDTDFREAR 2055 (2240)
Q Consensus 2015 ~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~fP~~~f~~a~ 2055 (2240)
.||..||++.+++.+.+..|+.+|...|+.+||..++.+-|
T Consensus 134 ~n~~~~~~~~~e~~~ag~~l~~~f~~~l~~vfpwf~~~~~~ 174 (183)
T 3lqh_A 134 QAAINSDGGQPEIKKANSMVKSFFIRQMERVFPWFSVKKSR 174 (183)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHCTTSCGGGCT
T ss_pred HHHhhccCCChhhhhhhhHHHHHHHHHHHHHCCCCCccccc
Confidence 99999999999999999999999999999999988876654
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-08 Score=127.17 Aligned_cols=82 Identities=18% Similarity=0.161 Sum_probs=62.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC--CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL--PSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~--Psl 1076 (2240)
++||+|.+.+.-+.....++.++|+..+||+|||+.++..+...+... ..+++|++|+. +..|+.+++.++. ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 579999999987777777788999999999999999887665554333 35889999976 6788999988764 256
Q ss_pred eEEEEec
Q 000099 1077 SCIYYVG 1083 (2240)
Q Consensus 1077 kVvvy~G 1083 (2240)
+++++.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 6665554
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.4e-08 Score=113.38 Aligned_cols=149 Identities=15% Similarity=0.127 Sum_probs=93.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC--CCCeEEEechHHH-HHHHHHHHHHCCC-
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGN--YGPHLIIVPNAVL-VNWKSELHKWLPS- 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~--~GP~LIVVP~SLL-~QW~~Ef~Kw~Ps- 1075 (2240)
.+++||.+++..+.. +...++..++|+|||.+...++.......+. ...+|+++|...+ .+....+...+..
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 588999999998876 7778999999999997766655543332332 2367888998754 5566666665532
Q ss_pred C-eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEeccccccc-CCchhH--HHHHh-hcccc
Q 000099 1076 V-SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM-KDRESV--LARDL-DRYRC 1150 (2240)
Q Consensus 1076 l-kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrL-KN~~SK--lskaL-k~Lks 1150 (2240)
+ ..+.|.- .... .......+|+|+|++.+.+.... .-.++++|||||||++ .+.... ..+.+ .....
T Consensus 137 ~~~~~g~~~-~~~~------~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~ 208 (235)
T 3llm_A 137 PGKSCGYSV-RFES------ILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE 208 (235)
T ss_dssp TTSSEEEEE-TTEE------ECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred cCceEEEee-chhh------ccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC
Confidence 1 1111111 1000 01124578999999988766432 2346899999999984 222211 22222 23344
Q ss_pred ceEEEeecCC
Q 000099 1151 QRRLLLTGTP 1160 (2240)
Q Consensus 1151 ~~RLLLTGTP 1160 (2240)
...+++|||+
T Consensus 209 ~~~il~SAT~ 218 (235)
T 3llm_A 209 VRIVLMSATI 218 (235)
T ss_dssp SEEEEEECSS
T ss_pred CeEEEEecCC
Confidence 5689999996
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-08 Score=124.88 Aligned_cols=132 Identities=21% Similarity=0.225 Sum_probs=94.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--S 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--s 1075 (2240)
.++||||.+.+..+...+..+.++|+...||+|||+.++..+.. ...++||++|+. +..||.+++.++.. .
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 37999999999877777777888999999999999988766654 245899999976 77889999988743 5
Q ss_pred CeEEEEecchhh--------------------------------HhHHHH----------------HHHhhcCCcEEEEc
Q 000099 1076 VSCIYYVGAKDQ--------------------------------RSRLFS----------------QEVAALKFNVLVTT 1107 (2240)
Q Consensus 1076 lkVvvy~Gskde--------------------------------Rk~l~~----------------qei~~~~fdVVITT 1107 (2240)
++++++.|.... ...++. ........+|||+|
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 677777664321 001110 01123467999999
Q ss_pred HHHHHHhh--hhcc-ccCcceEecccccccCC
Q 000099 1108 YEFIMYDR--SKLS-KVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1108 YE~L~kD~--s~L~-kikWd~VIIDEAHrLKN 1136 (2240)
|.++..+. ..+. .....+|||||||++-+
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99998763 2221 13567899999999976
|
| >3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.6e-10 Score=118.08 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=78.2
Q ss_pred ccccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000099 1706 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1782 (2240)
Q Consensus 1706 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1782 (2240)
+.+.+ +++.|+.++ +.+||+++++| .|||++ |+||. ++||+|.. |..+|+.|.|.++.++..|+.+
T Consensus 10 ~~l~~-l~~~v~~~~-----De~GR~lsd~F~~LPsk~--pdYY~--k~Pi~l~~-Ikkri~~~~Y~sld~f~~D~~lmf 78 (147)
T 3iu6_A 10 ELIHN-LFVSVMSHQ-----DDEGRCYSDSLAEIPAVD--PNFPN--KPPLTFDI-IRKNVENNRYRRLDLFQEHMFEVL 78 (147)
T ss_dssp HHHHH-HHHHHHTCB-----CTTSCBGGGGGTTCCSSC--TTSTT--SCCCCHHH-HHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhhc-----CCCCCcchHHHhHCCCCC--ccccC--CCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44556 888999999 78999999999 999998 89998 99999999 9999999999999999999998
Q ss_pred --------CCCccccCCccccccccccccccccc
Q 000099 1783 --------SGSWTHDRDEGEDEQVLQPKIKRKRS 1808 (2240)
Q Consensus 1783 --------~~Sw~~~~~~~~d~~~~~~~~~rkr~ 1808 (2240)
+||||| +|+.+||-.+.++|.
T Consensus 79 ~NAr~yN~e~S~Iy-----eDAv~Lq~~f~~~r~ 107 (147)
T 3iu6_A 79 ERARRMNRTDSEIY-----EDAVELQQFFIKIRD 107 (147)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHH-----HHHHHHHHHHHHHHH
Confidence 999999 999999955555543
|
| >3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A | Back alignment and structure |
|---|
Probab=98.64 E-value=8.2e-10 Score=114.95 Aligned_cols=93 Identities=15% Similarity=0.185 Sum_probs=79.7
Q ss_pred ccccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000099 1706 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1782 (2240)
Q Consensus 1706 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1782 (2240)
..++. +.+.++... +.+||+++.+| .+|++..||+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 11 ~~~~~-ll~~l~~~~-----d~~g~~~s~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 11 EILEQ-LLEAIVVAT-----NPSGRLISELFQKLPSKVQYPDYYAIIKEPIDLKT-IAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp HHHHH-HHHHHHHCB-----CTTSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhcc-----CcCCCcccHHhcCCCCcccCCChHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHH
Confidence 44555 677777777 66899999999 99999999999999999999999 9999999999999999999988
Q ss_pred --------CCCccccCCccccccccc-cccccccccc
Q 000099 1783 --------SGSWTHDRDEGEDEQVLQ-PKIKRKRSIR 1810 (2240)
Q Consensus 1783 --------~~Sw~~~~~~~~d~~~~~-~~~~rkr~~~ 1810 (2240)
+||+++ .++..|+ .+.++-.++.
T Consensus 84 ~Na~~yN~~~s~~~-----~~A~~L~~~f~~~~~~i~ 115 (120)
T 3ljw_A 84 KNAKTYNEPGSQVF-----KDANSIKKIFYMKKAEIE 115 (120)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHHHHHHHHHHHhh
Confidence 999999 8888777 5555444443
|
| >3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.1e-09 Score=109.79 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=71.5
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
+.+.+.... +++|+.++.+| .+|++..+||||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 17 i~~~l~~~~-----d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 90 (126)
T 3mqm_A 17 ICDGIISYK-----DSSRQALAAPLLNLPPKKKNADYYEKISDPLDLIT-IEKQILTGYYKTVEAFDADMLKVFRNAEKY 90 (126)
T ss_dssp HHHHHHHCB-----CTTCCBTTGGGSSCCCGGGCTTHHHHCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----CcCCCChhHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 556677766 66899999999 99999999999999999999999 9999999999999999999998
Q ss_pred --CCCccccCCccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ .++..|+
T Consensus 91 N~~~s~~~-----~~A~~L~ 105 (126)
T 3mqm_A 91 YGRKSPVG-----RDVCRLR 105 (126)
T ss_dssp HCTTSHHH-----HHHHHHH
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 999999 8887776
|
| >3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A | Back alignment and structure |
|---|
Probab=98.54 E-value=3.8e-09 Score=110.55 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=73.5
Q ss_pred ccccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000099 1706 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1782 (2240)
Q Consensus 1706 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1782 (2240)
..+.. +.+.+.... +.+|+.++.+| .+|++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 18 ~~~~~-il~~l~~~~-----d~~g~~~s~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 18 QKLNE-VYEAVKNYT-----DKRGRRLSAIFLRLPSRSELPDYYLTIKKPMDMEK-IRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp HHHHH-HHHHHHHCB-----CTTSCBGGGGGSCCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhHh-----cccCCcccHHhhcCCCccccCCHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34444 566677766 56899999999 99999999999999999999999 9999999999999999999998
Q ss_pred --------CCCccccCCccccccccc
Q 000099 1783 --------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ .++..|+
T Consensus 91 ~Na~~yN~~~s~i~-----~~A~~L~ 111 (124)
T 3mb4_A 91 NNACTYNEPESLIY-----KDALVLH 111 (124)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 8887776
|
| >2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.5e-09 Score=109.93 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=74.9
Q ss_pred ccccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000099 1706 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1782 (2240)
Q Consensus 1706 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1782 (2240)
..++. +.+.++... +.+||.++.+| .+|++..|||||.+|++||||.+ |..+|+.|+|.++.++..|+.+
T Consensus 16 ~~~~~-il~~l~~~~-----d~~g~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 16 KQMNA-IIDTVINYK-----DSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp HHHHH-HHHHHHHCB-----CSSSCBSGGGGTSCCCTTTSCHHHHHCSSCCCHHH-HHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhhh-----cccCCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 44555 667777776 56899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --------CCCccccCCcccccccccc
Q 000099 1783 --------SGSWTHDRDEGEDEQVLQP 1801 (2240)
Q Consensus 1783 --------~~Sw~~~~~~~~d~~~~~~ 1801 (2240)
++|+++ .++..|+-
T Consensus 89 ~Na~~yN~~~s~i~-----~~A~~L~~ 110 (123)
T 2dat_A 89 HNAQTFNLEGSQIY-----EDSIVLQS 110 (123)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHHH
Confidence 999999 88877773
|
| >3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.7e-09 Score=109.71 Aligned_cols=82 Identities=16% Similarity=0.075 Sum_probs=73.6
Q ss_pred cccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000099 1707 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1782 (2240)
Q Consensus 1707 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1782 (2240)
.+.. +.+.+.+.. +..|+.++.+| .+|++..||+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 21 ~~~~-l~~~l~~~~-----d~~g~~~s~~F~~pv~~~~~PdY~~iIk~PMdL~t-I~~kL~~~~Y~s~~ef~~Dv~Lif~ 93 (130)
T 3k2j_A 21 QSMQ-LYDTVRSCR-----NNQGQLIAEPFYHLPSKKKYPDYYQQIKMPISLQQ-IRTKLKNQEYETLDHLECDLNLMFE 93 (130)
T ss_dssp HHHH-HHHHHHTCB-----CSSSCBTTGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHh-----cccCCCccHhhcCCCChhhCccHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 3445 666777777 67899999999 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccc
Q 000099 1783 -------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 -------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ +++..|+
T Consensus 94 Na~~yN~~~s~i~-----~~A~~L~ 113 (130)
T 3k2j_A 94 NAKRYNVPNSAIY-----KRVLKLQ 113 (130)
T ss_dssp HHHHHSCTTSHHH-----HHHHHHH
T ss_pred HHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 8877776
|
| >3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.2e-09 Score=106.79 Aligned_cols=81 Identities=15% Similarity=0.078 Sum_probs=72.0
Q ss_pred ccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----
Q 000099 1708 SENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ---- 1782 (2240)
Q Consensus 1708 ~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~---- 1782 (2240)
+.. +.+.+.... +.+||.++.+| .+|++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 10 c~~-il~~l~~~~-----d~~g~~~s~~F~~p~~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~N 82 (116)
T 3iu5_A 10 CHE-LYNTIRDYK-----DEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMK-IQQKLKMEEYDDVNLLTADFQLLFNN 82 (116)
T ss_dssp HHH-HHHHHHHCB-----CTTCCBGGGGGSSCCCGGGCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHhh-----ccCCCeeeHHhcCCCCcccCCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 344 556677666 56899999999 99999999999999999999999 9999999999999999999988
Q ss_pred ------CCCccccCCccccccccc
Q 000099 1783 ------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 ------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ .++..|+
T Consensus 83 a~~yN~~~s~~~-----~~A~~L~ 101 (116)
T 3iu5_A 83 AKSYYKPDSPEY-----KAACKLW 101 (116)
T ss_dssp HHHHSCTTSHHH-----HHHHHHH
T ss_pred HHHHCCCCCHHH-----HHHHHHH
Confidence 999999 7777666
|
| >3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.6e-09 Score=111.09 Aligned_cols=94 Identities=16% Similarity=0.191 Sum_probs=79.1
Q ss_pred ccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----
Q 000099 1708 SENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ---- 1782 (2240)
Q Consensus 1708 ~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~---- 1782 (2240)
++. +++.+++.. ++.+||.++++| .+|++..|||||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 29 ~k~-ll~~l~~~~----~~~~~~~~~~~F~~~~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 29 MKI-LFNVVLEAR----EPGSGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKI-IEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHH-HHHHHHHCB----CTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHH----hcccCCcccHHhcCCCchhhCcCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 444 667777766 245799999999 99999999999999999999999 9999999999999999999998
Q ss_pred ------CCCccccCCccccccccc-cccccccccccc
Q 000099 1783 ------SGSWTHDRDEGEDEQVLQ-PKIKRKRSIRVR 1812 (2240)
Q Consensus 1783 ------~~Sw~~~~~~~~d~~~~~-~~~~rkr~~~~r 1812 (2240)
++|+++ .++..|+ -+.++-.++...
T Consensus 103 a~~yN~~~s~i~-----~~A~~L~~~f~~~~~~l~~~ 134 (150)
T 3tlp_A 103 ARHYNEEGSQVY-----NDAHILEKLLKEKRKELGPL 134 (150)
T ss_dssp HHHHSCTTSHHH-----HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHCCCCCHHH-----HHHHHHHHHHHHHHHHccCC
Confidence 999999 9998888 444444444444
|
| >2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.3e-08 Score=104.27 Aligned_cols=86 Identities=21% Similarity=0.260 Sum_probs=74.0
Q ss_pred ccccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--
Q 000099 1706 RPSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-- 1782 (2240)
Q Consensus 1706 ~~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-- 1782 (2240)
..+.. ++++++... ++.+||.++.+| .+|++..+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 14 ~~~~~-il~~l~~~~----d~~~~~~~s~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~Li~ 87 (129)
T 2grc_A 14 KKMKK-IVDAVIKYK----DSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK-IKERIRNHKYRSLNDLEKDVMLLC 87 (129)
T ss_dssp HHHHH-HHHHHHHCB----CTTTCCBGGGGGSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHhcc----cccccCeeeHHhcCCCCcccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34445 566677665 234899999999 99999999999999999999999 9999999999999999999999
Q ss_pred --------CCCccccCCccccccccccc
Q 000099 1783 --------SGSWTHDRDEGEDEQVLQPK 1802 (2240)
Q Consensus 1783 --------~~Sw~~~~~~~~d~~~~~~~ 1802 (2240)
+||+++ .++..|+-.
T Consensus 88 ~Na~~yN~~~s~i~-----~~A~~L~~~ 110 (129)
T 2grc_A 88 QNAQTFNLEGSLIY-----EDSIVLQSV 110 (129)
T ss_dssp HHHHHHSCTTSHHH-----HHHHHHHHH
T ss_pred HHHHHHCCCCCHHH-----HHHHHHHHH
Confidence 999999 888777733
|
| >3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A | Back alignment and structure |
|---|
Probab=98.04 E-value=3.5e-07 Score=94.09 Aligned_cols=65 Identities=15% Similarity=0.030 Sum_probs=59.5
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1798 (2240)
+..+.+| .+|+...+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ ..+..
T Consensus 22 ~~~~~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~~~-----~~A~~ 95 (112)
T 3d7c_A 22 HPSAWPFMEPVKKSEAPDYYEVIRFPIDLKT-MTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYC-----RCASA 95 (112)
T ss_dssp SGGGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCCchhhcCCCCcccccCHHHHccCCcCHHH-HHHHHcCCCCcCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 3478899 99999999999999999999999 9999999999999999999999 899998 77766
Q ss_pred cc
Q 000099 1799 LQ 1800 (2240)
Q Consensus 1799 ~~ 1800 (2240)
|+
T Consensus 96 L~ 97 (112)
T 3d7c_A 96 LE 97 (112)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=6.2e-07 Score=93.19 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=57.9
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+|+...+||||.+|++||||++ |..+|+.|+|.++.++..|+.+ +||+++ +.+..|
T Consensus 24 ~~~~~F~~PVd~~~~pdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~yN~~~s~i~-----~~A~~L 97 (117)
T 2i7k_A 24 DPSAFFSFPVTDFIAPGYSMIIKHPMDFST-MKEKIKNNDYQSIEELKDNFKLMCTNAMIYNKPETIYY-----KAAKKL 97 (117)
T ss_dssp SGGGTSSSCCCTTTSSSHHHHCSCCCCHHH-HHHHHTTTSCCSHHHHHHHHHHHHHHHHHTSCSSSSHH-----HHHHHH
T ss_pred cccHHhcCCCCccccCCHHHHhCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 346788 77888899999999999999999 9999999999999999999999 999998 777666
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 98 ~ 98 (117)
T 2i7k_A 98 L 98 (117)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=5.4e-07 Score=94.06 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=59.9
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1798 (2240)
+..+.+| .+|+...+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ ..+..
T Consensus 28 ~~~a~~F~~pvd~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~ 101 (121)
T 1e6i_A 28 HAAAWPFLQPVNKEEVPDYYDFIKEPMDLST-MEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYY-----KYANR 101 (121)
T ss_dssp STTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCCchhhCCCCChhhCcCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 4578899 99999999999999999999999 9999999999999999999999 899998 77766
Q ss_pred cc
Q 000099 1799 LQ 1800 (2240)
Q Consensus 1799 ~~ 1800 (2240)
|+
T Consensus 102 L~ 103 (121)
T 1e6i_A 102 LE 103 (121)
T ss_dssp HH
T ss_pred HH
Confidence 66
|
| >2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=5e-07 Score=94.33 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=58.3
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
.+.+| .+|+...+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ .++..|+
T Consensus 24 ~~~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 97 (121)
T 2d9e_A 24 TGNIFSEPVPLSEVPDYLDHIKKPMDFFT-MKQNLEAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFY-----RAAVRLR 97 (121)
T ss_dssp SSCSSSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHHH
T ss_pred ccHhhCCcCCccccCCHHHHcCCCcCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 56889 99999999999999999999999 9999999999999999999999 899999 7776665
|
| >3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A | Back alignment and structure |
|---|
Probab=97.96 E-value=6.6e-07 Score=92.70 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=58.6
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+|+...+||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ ..+..|
T Consensus 29 ~~s~~F~~pv~~~~~pdY~~~I~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L 102 (117)
T 3g0l_A 29 EDAWPFLLPVNLKLVPGYKKVIKKPMDFST-IREKLSSGQYPNLETFALDVRLVFDNCETFNEDDSDIG-----RAGHNM 102 (117)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCSSSHHH-----HHHHHH
T ss_pred CCchhhcCcCChhhcCChHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 467899 99999999999999999999999 9999999999999999999988 899988 776665
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 103 ~ 103 (117)
T 3g0l_A 103 R 103 (117)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 | Back alignment and structure |
|---|
Probab=97.92 E-value=7.7e-07 Score=92.04 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=57.5
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
.+.+| .+|+...+||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ +.+..|+
T Consensus 33 ~s~~F~~pv~~~~~pdY~~~I~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 106 (116)
T 3nxb_A 33 DSWPFLEPVDESYAPNYYQIIKAPMDISS-MEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYT-----KMSDNLE 106 (116)
T ss_dssp TCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHH-----HHHHHHH
T ss_pred CcHhhcCcCChhhccChHHHcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 36789 99999999999999999999999 9999999999999999999998 899988 6666555
|
| >3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A | Back alignment and structure |
|---|
Probab=97.90 E-value=9.6e-07 Score=96.26 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=67.4
Q ss_pred cccccccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC---
Q 000099 1707 PSENTRNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ--- 1782 (2240)
Q Consensus 1707 ~~e~~~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~--- 1782 (2240)
.+.. .+..++... -..+..+.+| .+|+...||+||.+|++||||++ |..+|+.|.|.++.++..|+.+
T Consensus 29 ~l~~-iL~~i~~~k------l~~~~~s~~F~~PVd~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~ 100 (158)
T 3uv4_A 29 AFSF-ILDNIVTQK------MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLET-IRKNISKHKYQSRESFLDDVNLILA 100 (158)
T ss_dssp HHHH-HHHHHHHHT------TTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHH------HHcCCCchhhcCcCChhhcccHHHHcCCccCHHH-HHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3444 444466553 2456678899 99999999999999999999999 9999999999999999999998
Q ss_pred -------CCCccccCCccccccccc
Q 000099 1783 -------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 -------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+++ +++..|.
T Consensus 101 Na~~yN~~~s~i~-----~~A~~L~ 120 (158)
T 3uv4_A 101 NSVKYNGPESQYT-----KTAQEIV 120 (158)
T ss_dssp HHHHHHCTTCHHH-----HHHHHHH
T ss_pred HHHHHCCCCCHHH-----HHHHHHH
Confidence 999999 7776554
|
| >3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=9.4e-07 Score=93.75 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=58.0
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C-CCccccCCcccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~-~Sw~~~~~~~~d~~~~ 1799 (2240)
.+.+| .+|+...|||||.+|++||||++ |..+|+.|+|.++.++..|+.+ + ||+|+ +++..|
T Consensus 38 ~s~~F~~pv~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~-----~~A~~L 111 (135)
T 3mb3_A 38 DSEPFRQPVDLLEYPDYRDIIDTPMDFAT-VRETLEAGNYESPMELCKDVRLIFSNSKAYTPSKRSRIY-----SMSLRL 111 (135)
T ss_dssp GGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTCHHH-----HHHHHH
T ss_pred CChhhcCCCChhhCCCHHHHhCCCcCHHH-HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 37899 99999999999999999999999 9999999999999999999998 6 89999 777666
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 112 ~ 112 (135)
T 3mb3_A 112 S 112 (135)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=1e-06 Score=92.21 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=57.4
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~~ 1800 (2240)
.+.+| .+|+...+||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ +++..|.
T Consensus 30 ~~~~F~~pv~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~L~ 103 (123)
T 3hme_A 30 PHGFFAFPVTDAIAPGYSMIIKHPMDFGT-MKDKIVANEYKSVTEFKADFKLMCDNAMTYNRPDTVYY-----KLAKKIL 103 (123)
T ss_dssp TTCSSSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHHH
T ss_pred ccHhhcCCCChhhccCHHHHCCCCCCHHH-HHHHhccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHHH
Confidence 45689 88899999999999999999999 9999999999999999999988 999998 7776555
|
| >3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.2e-06 Score=91.64 Aligned_cols=63 Identities=13% Similarity=0.111 Sum_probs=57.9
Q ss_pred ccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------C-CCccccCCcccccccc
Q 000099 1732 LTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------S-GSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1732 l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~-~Sw~~~~~~~~d~~~~ 1799 (2240)
.+.+| .+|+...|||||.+|++||||++ |..+|+.|.|.++.++..|+.+ + +|+++ .++..|
T Consensus 27 ~s~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~~s~i~-----~~A~~L 100 (123)
T 3q2e_A 27 DSEPFRQPVDLVEYPDYRDIIDTPMDFGT-VRETLDAGNYDSPLEFCKDIRLIFSNAKAYTPNKRSKIY-----SMTLRL 100 (123)
T ss_dssp GGGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTTSHHH-----HHHHHH
T ss_pred CcHhhcCCCChhhcCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHH-----HHHHHH
Confidence 47899 99999999999999999999999 9999999999999999999998 5 89998 777666
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 101 ~ 101 (123)
T 3q2e_A 101 S 101 (123)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... | Back alignment and structure |
|---|
Probab=97.85 E-value=1.3e-06 Score=92.00 Aligned_cols=65 Identities=12% Similarity=0.133 Sum_probs=58.1
Q ss_pred ccccccc-CCCCc--ccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccc
Q 000099 1730 RRLTQIV-SPVSP--QKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (2240)
Q Consensus 1730 r~l~~~f-~lps~--~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1796 (2240)
+..+.+| ..++. ..+||||.+|++||||++ |..+|+.|+|.++.++..|+.+ +||+++ ..+
T Consensus 36 ~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~t-I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~s~i~-----~~A 109 (127)
T 2oss_A 36 HQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGT-IKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIV-----LMA 109 (127)
T ss_dssp STTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTCHHH-----HHH
T ss_pred CccchhhcCCCChhhccCccHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 4578899 77774 589999999999999999 9999999999999999999999 899999 777
Q ss_pred cccc
Q 000099 1797 QVLQ 1800 (2240)
Q Consensus 1797 ~~~~ 1800 (2240)
..|+
T Consensus 110 ~~L~ 113 (127)
T 2oss_A 110 EALE 113 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6666
|
| >3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.4e-06 Score=92.40 Aligned_cols=65 Identities=15% Similarity=0.115 Sum_probs=59.2
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1798 (2240)
+..+.+| .+|+...|||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ +++..
T Consensus 28 ~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~ 101 (135)
T 3rcw_A 28 KDPARIFAQPVSLKEVPDYLDHIKHPMDFAT-MRKRLEAQGYKNLHEFEEDFDLIIDNCMKYNARDTVFY-----RAAVR 101 (135)
T ss_dssp TCTTCSSSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCcchhhcCCCChhhcCCHHHHhCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 3457889 99999999999999999999999 9999999999999999999998 999999 77766
Q ss_pred cc
Q 000099 1799 LQ 1800 (2240)
Q Consensus 1799 ~~ 1800 (2240)
|+
T Consensus 102 L~ 103 (135)
T 3rcw_A 102 LR 103 (135)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.1e-06 Score=91.31 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=60.3
Q ss_pred CCccccccc-CCCCccc--ccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccc
Q 000099 1728 NSRRLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGE 1794 (2240)
Q Consensus 1728 ~~r~l~~~f-~lps~~~--~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~ 1794 (2240)
+.+.++.+| .+|+... |||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ .
T Consensus 25 ~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~~~-----~ 98 (120)
T 3jvl_A 25 KHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMST-IKSKLESREYRDAQEFGADVRLMFSNCYKYNPPDHEVV-----A 98 (120)
T ss_dssp GGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----H
T ss_pred cCccccchhcCCCCchhcCCCCHHHHcCCCCCHHH-HHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----H
Confidence 344567889 8889888 9999999999999999 9999999999999999999988 899999 7
Q ss_pred cccccc
Q 000099 1795 DEQVLQ 1800 (2240)
Q Consensus 1795 d~~~~~ 1800 (2240)
.+..|+
T Consensus 99 ~A~~L~ 104 (120)
T 3jvl_A 99 MARKLQ 104 (120)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
|
| >3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A | Back alignment and structure |
|---|
Probab=97.78 E-value=2.8e-06 Score=89.73 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=49.1
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ 1782 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~ 1782 (2240)
+..+.+| .+|+...|||||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 25 ~~~~~~F~~pv~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~~~~~f~~D~~l 77 (130)
T 3dai_A 25 DKRFRVFTKPVDPDEVPDYVTVIKQPMDLSS-VISKIDLHKYLTVKDYLRDIDL 77 (130)
T ss_dssp SGGGGGGSSCCCTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHH
T ss_pred CCccHhhcCCCChhhcCCHHHHcCCCCCHHH-HHHHHhCCCCCCHHHHHHHHHH
Confidence 3457899 99999999999999999999999 9999999999999999999998
|
| >2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.6e-06 Score=91.59 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=56.8
Q ss_pred cccccc-CCCCccc--ccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccc
Q 000099 1731 RLTQIV-SPVSPQK--FGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1797 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~--~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1797 (2240)
.++.+| .+|+... +||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ ..+.
T Consensus 41 ~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~-----~~A~ 114 (130)
T 2ouo_A 41 AYAWPFYKPVDVEALGLHDYCDIIKHPMDMST-IKSKLEAREYRDAQEFGADVRLMFSNCYKYNPPDHEVV-----AMAR 114 (130)
T ss_dssp HHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHH
T ss_pred hhHHHhcCCCChhhccCCcHHHHcCCCCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHcCCCCHHH-----HHHH
Confidence 467889 7777654 9999999999999999 9999999999999999999999 899999 7776
Q ss_pred ccc
Q 000099 1798 VLQ 1800 (2240)
Q Consensus 1798 ~~~ 1800 (2240)
.|+
T Consensus 115 ~L~ 117 (130)
T 2ouo_A 115 KLQ 117 (130)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.6e-06 Score=95.31 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=59.9
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1798 (2240)
+..+.+| .+|+...+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ ..+..
T Consensus 87 ~~~~~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~ 160 (174)
T 2ri7_A 87 HKMAWPFLEPVDPNDAPDYYGVIKEPMDLAT-MEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDSPFY-----QCAEV 160 (174)
T ss_dssp SGGGTTTSSCCCTTTCHHHHHHCSSCCCHHH-HHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred hhhhhhhhcCCCcccCCchHHHhCCcCCHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 5578899 88999999999999999999999 9999999999999999999999 899998 77777
Q ss_pred cc
Q 000099 1799 LQ 1800 (2240)
Q Consensus 1799 ~~ 1800 (2240)
|+
T Consensus 161 L~ 162 (174)
T 2ri7_A 161 LE 162 (174)
T ss_dssp HH
T ss_pred HH
Confidence 66
|
| >3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A | Back alignment and structure |
|---|
Probab=97.76 E-value=1.9e-06 Score=89.56 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=57.7
Q ss_pred ccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccc
Q 000099 1730 RRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (2240)
Q Consensus 1730 r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1796 (2240)
+..+.+| .+++.. .+||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ +.+
T Consensus 27 ~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~t-I~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A 100 (119)
T 3p1f_A 27 DPESLPFRQPVDPQLLGIPDYFDIVKNPMDLST-IKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVY-----KFC 100 (119)
T ss_dssp TTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHH
T ss_pred CCCCchhcCCCCchhccCCCHHHHhcCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 4567889 778877 69999999999999999 9999999999999999999998 899998 766
Q ss_pred cccc
Q 000099 1797 QVLQ 1800 (2240)
Q Consensus 1797 ~~~~ 1800 (2240)
..|+
T Consensus 101 ~~L~ 104 (119)
T 3p1f_A 101 SKLA 104 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
|
| >4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A | Back alignment and structure |
|---|
Probab=97.74 E-value=2.5e-06 Score=92.68 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=64.5
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcc--cccchhhhhcCCCCcccccchhhccCccccccccccccCC------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQ--KFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ------ 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~--~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~------ 1782 (2240)
+...|++.- .....+.+| .+|+.. .|||||.+|++||||++ |..+|+.|+|.++.++..|+.+
T Consensus 36 ~~~~il~~l-------~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~t-I~~kl~~~~Y~s~~ef~~Dv~Lif~Na~ 107 (154)
T 4alg_A 36 LHKVVMKAL-------WKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGT-IKRRLENNYYWAASECMQDFNTMFTNCY 107 (154)
T ss_dssp HHHTHHHHH-------HTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 444555554 234678899 888877 59999999999999999 9999999999999999999998
Q ss_pred ----CCCccccCCccccccccc
Q 000099 1783 ----SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 ----~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|+|+ .++..|+
T Consensus 108 ~YN~~~s~i~-----~~A~~L~ 124 (154)
T 4alg_A 108 IYNKPTDDIV-----LMAQTLE 124 (154)
T ss_dssp HHSCTTSHHH-----HHHHHHH
T ss_pred HHCCCCCHHH-----HHHHHHH
Confidence 899999 8887777
|
| >3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.53 E-value=6.3e-06 Score=90.51 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=54.9
Q ss_pred ccccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccc
Q 000099 1730 RRLTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (2240)
Q Consensus 1730 r~l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1796 (2240)
...+.+| .+++ +..||+||.+|++||||++ |..+|+.|.|.++.++..|+.+ ++|+|+ ..+
T Consensus 36 ~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~t-I~~kL~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~-----~~A 109 (166)
T 3fkm_X 36 YEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSC-IKTKLKKGQYAYPSEFVKDVQLIFDNCSLYNTSNSVVA-----ITG 109 (166)
T ss_dssp STTGGGGSSCCC-----CCCGGGCCSSCCCHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHHHSSCTTSHHH-----HHH
T ss_pred CCCChhhcCCCChhhccCCCHHHhcCCCCCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHH
Confidence 3456788 7755 4569999999999999999 9999999999999999999998 999999 777
Q ss_pred cccc
Q 000099 1797 QVLQ 1800 (2240)
Q Consensus 1797 ~~~~ 1800 (2240)
..|+
T Consensus 110 ~~L~ 113 (166)
T 3fkm_X 110 KNIE 113 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6555
|
| >2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=8.4e-06 Score=86.68 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=57.5
Q ss_pred cccccccCCCCcccccchhhhhcCCCCcccccchhhcc--CccccccccccccCC----------CCCccccCCcccccc
Q 000099 1730 RRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQ 1797 (2240)
Q Consensus 1730 r~l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~lee--g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~ 1797 (2240)
+..+.+|.-|....+||||.+|++||||.+ |..+|+. |+|.++.++..|+.+ ++|+++ .++.
T Consensus 35 ~~~s~~F~~Pv~~~~pdY~~iIk~PmDL~t-I~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na~~yN~~~s~i~-----~~A~ 108 (135)
T 2yyn_A 35 HEMSLAFQDPVPLTVPDYYKIIKNPMDLST-IKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVA-----NAGI 108 (135)
T ss_dssp SGGGGGGSSCCCTTSTTHHHHCSSCCCHHH-HHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHH
T ss_pred CccchhhcCCCcccCCCHHHHcCCCCCHHH-HHHHHhccccCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHH
Confidence 467889933545589999999999999999 9999998 699999999999999 999999 8887
Q ss_pred cccc
Q 000099 1798 VLQP 1801 (2240)
Q Consensus 1798 ~~~~ 1801 (2240)
.|+-
T Consensus 109 ~L~~ 112 (135)
T 2yyn_A 109 KLEN 112 (135)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7773
|
| >2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=2.1e-05 Score=83.42 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=47.6
Q ss_pred ccccccCCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccc
Q 000099 1731 RLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTH 1788 (2240)
Q Consensus 1731 ~l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~ 1788 (2240)
..+.+|.-| +||||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++
T Consensus 28 ~~~~~F~~P----~pdY~~iIk~PmDL~t-I~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~~~ 90 (131)
T 2dkw_A 28 KRFNIFSKP----VSDYLEVIKEPMDLST-VITKIDKHNYLTAKDFLKDIDLICSNALEYNPDKDPGD 90 (131)
T ss_dssp GGGCTTSSC----CSSCTTSCSSCCCHHH-HHHHHHTTCCCSSHHHHHHHHHHHHHHHHSCCCSSTTH
T ss_pred ccchhhcCc----CccHHhHcCCCcCHHH-HHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCCChhH
Confidence 356788446 9999999999999999 9999999999999999999999 888763
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0016 Score=84.79 Aligned_cols=69 Identities=23% Similarity=0.190 Sum_probs=53.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHH
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKW 1072 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw 1072 (2240)
...|-+.|.++|..++. ...-.||..+.|+|||.+.+.+|.+++.. ..++||++|+.. +.+....+...
T Consensus 187 ~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 187 NTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp STTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 34799999999998875 22236899999999999999999988862 358999999764 56666666554
|
| >3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=2.8e-05 Score=87.92 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=50.6
Q ss_pred cccccccCCCCcccccchhhhhcCCCCcccccchhhcc---CccccccccccccCC----------CCCccccCCccccc
Q 000099 1730 RRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE---GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDE 1796 (2240)
Q Consensus 1730 r~l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~lee---g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~ 1796 (2240)
+..+.+|.-|....||+||.+|++||||++ |..+|+. |+|.++.++..|+.+ ++|+|+ .++
T Consensus 96 ~~~s~~F~~Pv~~~~pdY~~iIk~PmdL~t-I~~kl~~~~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~v~-----~~A 169 (207)
T 3u5n_A 96 HELSIEFQEPVPASIPNYYKIIKKPMDLST-VKKKLQKKHSQHYQIPDDFVADVRLIFKNCERFNEMMKVVQ-----VYA 169 (207)
T ss_dssp STTCGGGSSCCCTTSTTHHHHCSSCCCHHH-HHHHHSTTSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred ccchhhhhccCChhhccHhHHhCCccCHHH-HHHHHhcccCCCcCCHHHHHHHHHHHHHHHHHHCCCcchHH-----HHH
Confidence 346788833444589999999999999999 9999997 899999999999999 788888 666
Q ss_pred cccc
Q 000099 1797 QVLQ 1800 (2240)
Q Consensus 1797 ~~~~ 1800 (2240)
.++.
T Consensus 170 ~~l~ 173 (207)
T 3u5n_A 170 DTQE 173 (207)
T ss_dssp ----
T ss_pred HHHH
Confidence 5544
|
| >3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A | Back alignment and structure |
|---|
Probab=97.21 E-value=2.2e-05 Score=87.27 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=53.8
Q ss_pred cccccCCCCcccccchhhhhcCCCCcccccchhhcc--CccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1732 LTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEE--GEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1732 l~~~f~lps~~~~~~yya~i~~P~dl~~~i~~~lee--g~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
.+.+|.-|....+|+||.+|++||||++ |..+|+. |.|.++.++..|+.+ ++|+++ ..+..|
T Consensus 98 ~s~~F~~Pv~~~~pdY~~iIk~PmdL~t-I~~kl~~~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~v~-----~~a~~L 171 (184)
T 3o36_A 98 MSLAFQDPVPLTVPDYYKIIKNPMDLST-IKKRLQEDYSMYSKPEDFVADFRLIFQNCAEFNEPDSEVA-----NAGIKL 171 (184)
T ss_dssp TCHHHHSCCCTTSTTHHHHCSSCCCHHH-HHHHHHSTTCSCCSHHHHHHHHHHHHHHHHHHSCTTCHHH-----HHHHHH
T ss_pred hhhhhccccccCCCchhhhcCCCCCHHH-HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 4678833444679999999999999999 9999998 899999999999998 889888 766665
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 172 ~ 172 (184)
T 3o36_A 172 E 172 (184)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0032 Score=78.58 Aligned_cols=140 Identities=13% Similarity=0.065 Sum_probs=81.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~l-nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Pslk 1077 (2240)
..|-+-|.+++..++.....+. ..+|....|+|||..+.+++.+|.... ...+|+++|+.....-..+.. ...
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~--~~~il~~a~T~~Aa~~l~~~~----~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTG--ETGIILAAPTHAAKKILSKLS----GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSHHHHHHHHHHH----SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC--CceEEEecCcHHHHHHHHhhh----ccc
Confidence 3699999999998876554443 678899999999999988888887532 257899999876543222211 011
Q ss_pred EEEEecchhhHhHHHHHHH-hhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHh-hccccceEEE
Q 000099 1078 CIYYVGAKDQRSRLFSQEV-AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDL-DRYRCQRRLL 1155 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei-~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaL-k~Lks~~RLL 1155 (2240)
+..++ .++.... .......+... .......+++|||||+|.+- ......| ..+....+++
T Consensus 98 ~~T~h-------~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~iiiDE~~~~~---~~~~~~l~~~~~~~~~~~ 159 (459)
T 3upu_A 98 ASTIH-------SILKINPVTYEENVLFEQK--------EVPDLAKCRVLICDEVSMYD---RKLFKILLSTIPPWCTII 159 (459)
T ss_dssp EEEHH-------HHHTEEEEECSSCEEEEEC--------SCCCCSSCSEEEESCGGGCC---HHHHHHHHHHSCTTCEEE
T ss_pred hhhHH-------HHhccCcccccccchhccc--------ccccccCCCEEEEECchhCC---HHHHHHHHHhccCCCEEE
Confidence 11000 0000000 00000001000 01122368999999999873 2233333 3345567899
Q ss_pred eecCCCC
Q 000099 1156 LTGTPLQ 1162 (2240)
Q Consensus 1156 LTGTPLQ 1162 (2240)
+.|-|-|
T Consensus 160 ~vGD~~Q 166 (459)
T 3upu_A 160 GIGDNKQ 166 (459)
T ss_dssp EEECTTS
T ss_pred EECCHHH
Confidence 9998866
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0035 Score=81.39 Aligned_cols=149 Identities=19% Similarity=0.311 Sum_probs=92.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw~PslkV 1078 (2240)
.|-+.|.+++..++. +...+|....|+|||.++..++.++.. ....++||++|+... .+-...+.+. ++.+
T Consensus 180 ~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~ 251 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQT--GLKV 251 (624)
T ss_dssp CCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHT--SSSCCEEEEESSHHHHHHHHHHHHTT--TCCE
T ss_pred CCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCcHHHHHHHHHHHHhc--CCeE
Confidence 688999999988764 345688899999999999888877763 244689999998754 4445555443 2222
Q ss_pred EEEecchhh------------------------Hh-----------------HHHH------HHHhhcCCcEEEEcHHHH
Q 000099 1079 IYYVGAKDQ------------------------RS-----------------RLFS------QEVAALKFNVLVTTYEFI 1111 (2240)
Q Consensus 1079 vvy~Gskde------------------------Rk-----------------~l~~------qei~~~~fdVVITTYE~L 1111 (2240)
+-+ |.... .. ..+. ........+||++|...+
T Consensus 252 ~R~-~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~ 330 (624)
T 2gk6_A 252 VRL-CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 330 (624)
T ss_dssp EEC-CCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGG
T ss_pred Eee-ccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhh
Confidence 211 11000 00 0000 011134568998887654
Q ss_pred HHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCCC
Q 000099 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (2240)
Q Consensus 1112 ~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQN 1163 (2240)
.. ..+....|++||||||..+..+.+ + +..+....+++|-|=|.|-
T Consensus 331 ~~--~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 331 GD--PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp GC--GGGTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred cc--hhhhcCCCCEEEEecccccCcHHH-H---HHHHhcCCeEEEecChhcc
Confidence 32 345567899999999977654432 1 1122234689999998763
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0033 Score=81.06 Aligned_cols=132 Identities=18% Similarity=0.123 Sum_probs=83.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCe
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVS 1077 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Pslk 1077 (2240)
+..|-+.|..++..++. +...+|....|+|||.++.+++..+.. . ..++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~~----~~~~~I~G~pGTGKTt~i~~l~~~l~~-~--g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG----HRLVVLTGGPGTGKSTTTKAVADLAES-L--GLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTT----CSEEEEECCTTSCHHHHHHHHHHHHHH-T--TCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHHh----CCEEEEEcCCCCCHHHHHHHHHHHHHh-c--CCeEEEecCcHHHHHHhHhhhc----cc
Confidence 45789999999998874 556789999999999988777766654 2 3589999998876665544321 00
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEee
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLT 1157 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLT 1157 (2240)
...+ ..++. ... . .+. ...-....+++|||||++.+-. ..+...+..+....+++|.
T Consensus 256 a~Ti-------h~ll~----~~~-~-------~~~--~~~~~~~~~dvlIIDEasml~~--~~~~~Ll~~~~~~~~lilv 312 (574)
T 3e1s_A 256 ASTV-------HRLLG----YGP-Q-------GFR--HNHLEPAPYDLLIVDEVSMMGD--ALMLSLLAAVPPGARVLLV 312 (574)
T ss_dssp EEEH-------HHHTT----EET-T-------EES--CSSSSCCSCSEEEECCGGGCCH--HHHHHHHTTSCTTCEEEEE
T ss_pred HHHH-------HHHHc----CCc-c-------hhh--hhhcccccCCEEEEcCccCCCH--HHHHHHHHhCcCCCEEEEE
Confidence 0000 00000 000 0 000 0111234789999999998842 2344445556677899999
Q ss_pred cCCCCC
Q 000099 1158 GTPLQN 1163 (2240)
Q Consensus 1158 GTPLQN 1163 (2240)
|-|-|.
T Consensus 313 GD~~QL 318 (574)
T 3e1s_A 313 GDTDQL 318 (574)
T ss_dssp ECTTSC
T ss_pred eccccc
Confidence 999773
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0063 Score=81.28 Aligned_cols=148 Identities=18% Similarity=0.260 Sum_probs=92.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~PslkV 1078 (2240)
.|-+.|.+++..++. +...++....|+|||.++..++.++... ...++||++|+.. +.+-...+.+.. +.+
T Consensus 360 ~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~g--~~i 431 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDLG--LKV 431 (802)
T ss_dssp CCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHTT--CCE
T ss_pred cCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhhC--ccE
Confidence 689999999988764 3346888999999999998888887753 2358999999875 455555565532 222
Q ss_pred EEEecchh----------------------hHhHH-----------------HH------HHHhhcCCcEEEEcHHHHHH
Q 000099 1079 IYYVGAKD----------------------QRSRL-----------------FS------QEVAALKFNVLVTTYEFIMY 1113 (2240)
Q Consensus 1079 vvy~Gskd----------------------eRk~l-----------------~~------qei~~~~fdVVITTYE~L~k 1113 (2240)
+-+..... ....+ +. ........+||++|...+..
T Consensus 432 lR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~ 511 (802)
T 2xzl_A 432 VRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAGD 511 (802)
T ss_dssp EECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGGC
T ss_pred EeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcCh
Confidence 21111000 00000 00 00113456889888765542
Q ss_pred hhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCC
Q 000099 1114 DRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162 (2240)
Q Consensus 1114 D~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQ 1162 (2240)
..+.. .|++||||||..+..... + +..+....+++|-|=|.|
T Consensus 512 --~~L~~-~fd~viIDEA~q~~e~~~-l---i~l~~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 512 --KRLDT-KFRTVLIDESTQASEPEC-L---IPIVKGAKQVILVGDHQQ 553 (802)
T ss_dssp --TTCCS-CCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTS
T ss_pred --HHHhc-cCCEEEEECccccchHHH-H---HHHHhCCCEEEEEeCccc
Confidence 23444 899999999988753321 1 222234568999999866
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0084 Score=80.08 Aligned_cols=150 Identities=20% Similarity=0.298 Sum_probs=92.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHCCCCe
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWLPSVS 1077 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw~Pslk 1077 (2240)
..|-+.|.+++..++. +...+|....|+|||.++..++..+... ...++||++|+... .+-...+.+. ++.
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--g~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh--Ccc
Confidence 3689999999988764 3446889999999999998888877642 34689999998754 4444444432 222
Q ss_pred EEEEecchhh------------------------HhHHH-----------------H------HHHhhcCCcEEEEcHHH
Q 000099 1078 CIYYVGAKDQ------------------------RSRLF-----------------S------QEVAALKFNVLVTTYEF 1110 (2240)
Q Consensus 1078 Vvvy~Gskde------------------------Rk~l~-----------------~------qei~~~~fdVVITTYE~ 1110 (2240)
++-+ |.... ...+. . ........+||++|...
T Consensus 427 vvRl-g~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~ 505 (800)
T 2wjy_A 427 VVRL-CAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG 505 (800)
T ss_dssp EEEC-CCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGG
T ss_pred eEee-cccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhh
Confidence 2211 11100 00000 0 00112356788888765
Q ss_pred HHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCCC
Q 000099 1111 IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (2240)
Q Consensus 1111 L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQN 1163 (2240)
+.. ..+....|++||||||..+..+.. + +..+....+++|-|=|.|-
T Consensus 506 ~~~--~~l~~~~fd~viIDEAsQ~~e~~~-l---i~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 506 AGD--PRLAKMQFRSILIDESTQATEPEC-M---VPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp GGC--TTTTTCCCSEEEETTGGGSCHHHH-H---HHHTTTBSEEEEEECTTSC
T ss_pred hCC--hhhhcCCCCEEEEECCCCCCcHHH-H---HHHHhcCCeEEEecccccC
Confidence 432 335567899999999977643321 1 2222335689999998763
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0078 Score=78.03 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh-CCCCCeEEEechHHHHHH-HHHHHHHCCC--Ce
Q 000099 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK-GNYGPHLIIVPNAVLVNW-KSELHKWLPS--VS 1077 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k-g~~GP~LIVVP~SLL~QW-~~Ef~Kw~Ps--lk 1077 (2240)
-+.|..++..++. +...|+....|+|||.++..++..+.... ....++++++|+...... ...+..+... +.
T Consensus 151 ~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 5789999987764 56679999999999988877777665432 223478999998765443 3333332110 10
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCc-EEEEcHHH--HHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEE
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFN-VLVTTYEF--IMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRL 1154 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fd-VVITTYE~--L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RL 1154 (2240)
.....+... .....+ ++-++... +.... .....+++||||||+.+ + ...+...+..+....++
T Consensus 227 ~~~~~~~~~----------~~~Tih~ll~~~~~~~~~~~~~--~~~l~~d~lIIDEAsml-~-~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 227 DEQKKRIPE----------DASTLHRLLGAQPGSQRLRHHA--GNPLHLDVLVVDEASMI-D-LPMMSRLIDALPDHARV 292 (608)
T ss_dssp SCCCCSCSC----------CCBTTTSCC-----------CT--TSCCSCSEEEECSGGGC-B-HHHHHHHHHTCCTTCEE
T ss_pred HHHHhccch----------hhhhhHhhhccCCCchHHHhcc--CCCCCCCEEEEechhhC-C-HHHHHHHHHhCCCCCEE
Confidence 000000000 000011 11111111 11111 12237899999999955 3 23345556667777899
Q ss_pred EeecCCCCCC
Q 000099 1155 LLTGTPLQND 1164 (2240)
Q Consensus 1155 LLTGTPLQNn 1164 (2240)
+|.|-|.|-.
T Consensus 293 iLvGD~~QL~ 302 (608)
T 1w36_D 293 IFLGDRDQLA 302 (608)
T ss_dssp EEEECTTSGG
T ss_pred EEEcchhhcC
Confidence 9999987654
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.073 Score=68.60 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=49.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHH-HHHHHHHHHHHC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAV-LVNWKSELHKWL 1073 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SL-L~QW~~Ef~Kw~ 1073 (2240)
.|-+.|.++|.. .....++-...|+|||.+.+.-|.+++...+ ....+|+|+++.. .......+.+.+
T Consensus 9 ~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 689999999961 1334566777999999999999999987433 3357999998764 444555565553
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.14 Score=63.30 Aligned_cols=156 Identities=16% Similarity=0.120 Sum_probs=88.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHC---C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWL---P 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~---P 1074 (2240)
..|.|||...+..+.. ....++.-.=+.|||..+.+++++.... .....+++++|..- ...+..++..++ |
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 4799999998876632 2336777789999999888877765542 23346888889753 333445655553 4
Q ss_pred C-CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhh-ccc--c
Q 000099 1075 S-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYR--C 1150 (2240)
Q Consensus 1075 s-lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk-~Lk--s 1150 (2240)
. +...+...+. . .+ .. .....+.+.+- +...+.....+++|+||+|.+.+. ..++.++. .+. .
T Consensus 237 ~ll~~~~~~~~~-~--~I---~f-~nGs~i~~lsa-----~~~slrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~ 303 (385)
T 2o0j_A 237 DFLQPGIVEWNK-G--SI---EL-DNGSSIGAYAS-----SPDAVRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGR 303 (385)
T ss_dssp TTTSCCEEEECS-S--EE---EE-TTSCEEEEEEC-----SHHHHHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTT
T ss_pred HhhhhhhccCCc-c--EE---Ee-CCCCEEEEEEC-----CCCCccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCC
Confidence 3 2111101110 0 00 01 11122222221 233455667899999999999863 23344443 222 3
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhh
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNL 1174 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnF 1174 (2240)
..+++++.||-..+ -+|.+...
T Consensus 304 ~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 304 RSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp CCEEEEEECCCSSS--HHHHHHHH
T ss_pred CCcEEEEeCCCCch--hHHHHHHH
Confidence 46888889996553 55555543
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.037 Score=61.18 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=26.2
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
.++..+||+|||..++.++..+.. . ..+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~-~--g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL-G--KKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH-T--TCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-C--CCeEEEEeec
Confidence 478889999999888877766553 2 2467888876
|
| >2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.002 Score=72.09 Aligned_cols=60 Identities=13% Similarity=0.044 Sum_probs=50.9
Q ss_pred cccccc-CCCCcccccchhhhhc--CCCCcccccchhhccC---ccccccccccccCC---------CCCccccCCcccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEA--RPGSLSKRMPDELEEG---EIAVSGDSHMDHQQ---------SGSWTHDRDEGED 1795 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~--~P~dl~~~i~~~leeg---~ya~~~d~~~D~~~---------~~Sw~~~~~~~~d 1795 (2240)
..+.+| .+|+ |+||.+|+ +||||++ |..+|+.| +|.+..++..|+.+ +++.++ ..
T Consensus 92 ~~s~pF~~pV~----~~Yy~iIk~~~PMDL~t-Ik~kL~~~~~~~Y~s~~eF~~Dv~Lif~N~~~yN~~s~~~-----~~ 161 (189)
T 2ro1_A 92 EPCRPLHQLAT----DSTFSLDQPGGTLDLTL-IRARLQEKLSPPYSSPQEFAQDVGRMFKQFNKLTEDKADV-----QS 161 (189)
T ss_dssp TTHHHHHSCSC----CTTCSSSCSSCCCCHHH-HHHHHHTSSSSCCSCHHHHHHHHHHHHHHHHHHCCSSCSS-----HH
T ss_pred ccchhhcCCCC----hhhhccccCCCcccHHH-HHHHHhcCCCcccCCHHHHHHHHHHHHHHHHHHCCCCHHH-----HH
Confidence 367788 7666 88999998 7999999 99999999 99999999999999 666666 66
Q ss_pred ccccc
Q 000099 1796 EQVLQ 1800 (2240)
Q Consensus 1796 ~~~~~ 1800 (2240)
+..|+
T Consensus 162 a~~L~ 166 (189)
T 2ro1_A 162 IIGLQ 166 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66666
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.12 Score=59.31 Aligned_cols=111 Identities=19% Similarity=0.092 Sum_probs=59.2
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH-HHCCCCeEEEEecchhhHhHHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH-KWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~-Kw~PslkVvvy~GskdeRk~l~~qei 1096 (2240)
.+.-.++..+||.|||..++.++..+.. ...+++|+.|.-- .+ .. ..+.. .|.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~~d----~r-~~~~i~sr------lG~------------ 64 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPKID----TR-SIRNIQSR------TGT------------ 64 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEECCC----GG-GCSSCCCC------CCC------------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEeccC----ch-HHHHHHHh------cCC------------
Confidence 3334478899999999988888776654 2346777766421 00 00 00000 010
Q ss_pred hhcCCcEEEEcHHHHHHh-hhhccccCcceEecccccccCCchhHHHHHhhcc-ccceEEEeecC
Q 000099 1097 AALKFNVLVTTYEFIMYD-RSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1097 ~~~~fdVVITTYE~L~kD-~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks~~RLLLTGT 1159 (2240)
.-..+.+.+...+... ...+....+++|||||+|.+... ....+..+ .....++|||-
T Consensus 65 --~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 65 --SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp --SSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred --CccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 0011223333333322 12233346899999999987542 22233332 23567888886
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.058 Score=67.60 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=68.8
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhcC
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALK 1100 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~~ 1100 (2240)
.++...-|+|||.....++. ..+.|||+|+. +...|.+.+.+. |. ...
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~----------~~-------------~~~ 212 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANAS----------GI-------------IVA 212 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTT----------SC-------------CCC
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhc----------Cc-------------ccc
Confidence 36788899999976655442 25789999976 567788777431 00 001
Q ss_pred CcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceEEEeecCCCCC
Q 000099 1101 FNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQN 1163 (2240)
Q Consensus 1101 fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~RLLLTGTPLQN 1163 (2240)
-++-|.|++.+...........+++||||||..+- ...+...+..... .+++|.|-|-|-
T Consensus 213 ~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 213 TKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp CTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-SEEEEEECTTSC
T ss_pred ccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-CEEEEecCcccc
Confidence 12347788877655444333458999999998652 2233333333344 899999998653
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.28 Score=63.34 Aligned_cols=147 Identities=16% Similarity=0.113 Sum_probs=84.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---P 1074 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---P 1074 (2240)
..|.|||...+..+. . ....++.-.=|.|||..+.+++++.+... ....++++.|.. ....+...+..++ |
T Consensus 162 ~~l~p~Q~~i~~~l~---~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS---S-KRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCCHHHHHHHHHHH---H-CSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred CcCCHHHHHHHHhhc---c-ccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 479999999887662 1 34467777899999998877776665433 234788898865 3444445666654 3
Q ss_pred C-CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhc-cc--c
Q 000099 1075 S-VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YR--C 1150 (2240)
Q Consensus 1075 s-lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~-Lk--s 1150 (2240)
. +.......+.. .+ .. .....+.+.+ .+...+.....+++||||+|.+++.. .++.++.. +. .
T Consensus 237 ~~~~~~~~~~~~~---~i---~~-~nGs~i~~~s-----~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~ 303 (592)
T 3cpe_A 237 DFLQPGIVEWNKG---SI---EL-DNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGR 303 (592)
T ss_dssp TTTSCCEEEECSS---EE---EE-TTSCEEEEEE-----CCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSS
T ss_pred HhhccccccCCcc---EE---Ee-cCCCEEEEEe-----CCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhccCC
Confidence 2 11111100100 00 00 1112222222 12233445578899999999998742 44444442 22 3
Q ss_pred ceEEEeecCCCCC
Q 000099 1151 QRRLLLTGTPLQN 1163 (2240)
Q Consensus 1151 ~~RLLLTGTPLQN 1163 (2240)
..++++++||-..
T Consensus 304 ~~~ii~isTP~~~ 316 (592)
T 3cpe_A 304 RSKIIITTTPNGL 316 (592)
T ss_dssp CCEEEEEECCCTT
T ss_pred CceEEEEeCCCCc
Confidence 4688899999554
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.29 Score=55.97 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=26.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (2240)
++.-+||.|||..++.++..+.. ...++||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~---~g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQF---AKQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEecc
Confidence 57899999999988887766543 335788888753
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.11 Score=60.35 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=26.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCC-CCCeEEEech
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGN-YGPHLIIVPN 1059 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~-~GP~LIVVP~ 1059 (2240)
.+.+|..+.|+|||..+-++...+...... .++++.|.+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 356999999999999988777666542221 2355555433
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.4 Score=56.60 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=56.5
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhc
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~ 1099 (2240)
.+.+|..+.|+|||..+-++...+... ..+++.|....++..+...+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~--------------------------- 87 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVEHLKKG--------------------------- 87 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHHHHHHT---------------------------
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHHHHHHcC---------------------------
Confidence 467899999999998887777666542 34555555444444444333220
Q ss_pred CCcEEEEcHHHHHHhhhhccccCcceEecccccccCCc---hhHHHHHhhcc-ccceEEEeecC
Q 000099 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1100 ~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~---~SKlskaLk~L-ks~~RLLLTGT 1159 (2240)
....+.. .+ ...++|||||+|.+... ...+...+..+ ....++++|+|
T Consensus 88 -------~~~~~~~---~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 88 -------TINEFRN---MY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp -------CHHHHHH---HH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred -------cHHHHHH---Hh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 0001111 11 13679999999998642 22344444433 34457888887
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.35 Score=54.07 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=26.6
Q ss_pred eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
.++.-+||+|||..++.++..+.. ....++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEec
Confidence 377899999999888877766543 33578888876
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.31 Score=58.33 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=35.0
Q ss_pred CcHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHH
Q 000099 1001 LRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Ll 1044 (2240)
++|+|.+.+..+...+.++. + .+|..+.|+|||..+.++...+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 57899998888877665443 2 58899999999999988887765
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.45 Score=51.30 Aligned_cols=41 Identities=24% Similarity=0.459 Sum_probs=26.3
Q ss_pred cCcceEecccccccCCc-hhHHHHHhhccccceEEEeecCCC
Q 000099 1121 VDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPL 1161 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTPL 1161 (2240)
....+|||||+|.+... ...+...+.......++++|+...
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 45779999999998532 223444444545566777776543
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=91.72 E-value=0.75 Score=50.69 Aligned_cols=38 Identities=18% Similarity=-0.040 Sum_probs=25.4
Q ss_pred HHHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1008 GLQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1008 GLqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
.+.++..... .+.+.+|..+.|+|||..+-++...+..
T Consensus 39 ~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 39 LIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3444443333 3556789999999999888777665543
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=91.20 E-value=0.89 Score=59.34 Aligned_cols=69 Identities=17% Similarity=0.083 Sum_probs=49.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHH-HHHHHHHHHHHCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAV-LVNWKSELHKWLP 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SL-L~QW~~Ef~Kw~P 1074 (2240)
.|-+.|.++|... ....++....|+|||.+.+.-|.+++...+ ....+|+|+.+.. .......+.+.++
T Consensus 2 ~L~~~Q~~av~~~------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999998641 344567788999999999999999987644 4457899997654 4445555666543
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=90.99 E-value=0.69 Score=48.78 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=20.5
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLM 1044 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Ll 1044 (2240)
..+.+|..+.|+|||..+-++...+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44568999999999988877766554
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=90.58 E-value=0.43 Score=56.18 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=28.5
Q ss_pred CcceEecccccccC-C-chhHHHHHhhccccceEEEeecCCCC
Q 000099 1122 DWKYIIIDEAQRMK-D-RESVLARDLDRYRCQRRLLLTGTPLQ 1162 (2240)
Q Consensus 1122 kWd~VIIDEAHrLK-N-~~SKlskaLk~Lks~~RLLLTGTPLQ 1162 (2240)
...+|||||+|.+. . ....+...+..+....++++|.++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 67899999999995 2 23345555555566778888877643
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=90.44 E-value=1.3 Score=46.43 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
..+.+|..+.|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 355799999999999988777766543
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=90.38 E-value=0.45 Score=56.52 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=26.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
.+.||..+.|+|||..+-++...+ ..+++.|....++..|
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 91 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVSKW 91 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH------TCEEEEEEHHHHHTTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH------CCCEEEEchHHHhhcc
Confidence 456999999999998887765442 2355555544444444
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=1.3 Score=48.08 Aligned_cols=42 Identities=24% Similarity=0.165 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYL 1043 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~L 1043 (2240)
++..+..+...+..-......+|..+.|+|||..+-.+...+
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 444555554444322212246899999999998876665544
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=89.95 E-value=0.4 Score=55.16 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=18.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa 1041 (2240)
...+.+|..+.|+|||..+-++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 445679999999999988766654
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=2.5 Score=45.41 Aligned_cols=64 Identities=17% Similarity=0.117 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHHhhc-----CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSLYN-----NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKS 1067 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~-----n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~ 1067 (2240)
.+.|..++..+..... .+.+.+|..+.|+|||..+-+++..+....+. .++++.-..++..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~--~~~~~~~~~~~~~~~~ 84 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI--RGYFFDTKDLIFRLKH 84 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC--CCCEEEHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC--eEEEEEHHHHHHHHHH
Confidence 3578888887776553 34556888999999998887776666533322 3444443444444433
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=89.27 E-value=1.2 Score=55.40 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=55.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHHhhc
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAAL 1099 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei~~~ 1099 (2240)
.+.+|..+.|+|||..+-++...+... ....+++.|....++..+...+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~~~~~~~~~~~~~--------------------------- 182 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKFLNDLVDSMKEG--------------------------- 182 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHHHHHHHHHHHHTT---------------------------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHHHHHHHHHHcc---------------------------
Confidence 456899999999998887776666543 2223555554444433333333210
Q ss_pred CCcEEEEcHHHHHHhhhhccccCcceEecccccccCCc---hhHHHHHhhcc-ccceEEEeecC
Q 000099 1100 KFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRY-RCQRRLLLTGT 1159 (2240)
Q Consensus 1100 ~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~---~SKlskaLk~L-ks~~RLLLTGT 1159 (2240)
....+.. .+. ...++|||||+|.+... ...+...+..+ .....+++|.+
T Consensus 183 -------~~~~~~~---~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 183 -------KLNEFRE---KYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp -------CHHHHHH---HHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred -------cHHHHHH---Hhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 0011111 111 25789999999999753 23344455443 33456666654
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=89.17 E-value=0.48 Score=57.32 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=25.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL 1062 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL 1062 (2240)
.+.||..+.|+|||..+-++...+ ..+++.|....++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~------~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLV 121 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH------TCEEEEEEHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh------CCCEEEeeHHHHh
Confidence 467999999999999887776554 2355555444343
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.99 E-value=0.57 Score=55.26 Aligned_cols=39 Identities=33% Similarity=0.487 Sum_probs=26.5
Q ss_pred CcceEecccccccCC-chhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
.+.+|||||+|.+.. ....+.+.+.......+++++++.
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~ 172 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 172 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCc
Confidence 568999999999853 233455556665566677776654
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=88.90 E-value=1.1 Score=53.44 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHH-HhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWML-SLYNN--KLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1002 RPYQleGLqwLl-sL~~n--~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
++.+++.+..++ ..... ..+.+|..+.|+|||..+-+++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554333 32222 334689999999999988777766554
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.58 E-value=0.72 Score=55.00 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=24.9
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGT 1159 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGT 1159 (2240)
.|.+|||||+|+|... ...+.+.|.......+++|+.+
T Consensus 82 ~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~ 120 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp SSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred CceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 6899999999999532 2234455555555566666654
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.41 E-value=0.27 Score=51.72 Aligned_cols=31 Identities=16% Similarity=0.144 Sum_probs=22.7
Q ss_pred HHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000099 1010 QWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (2240)
Q Consensus 1010 qwLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (2240)
.++........+.+|..+.|+|||..+-++.
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHH
Confidence 3444444567788999999999998775543
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=88.32 E-value=1.5 Score=50.95 Aligned_cols=40 Identities=23% Similarity=0.473 Sum_probs=26.8
Q ss_pred cCcceEecccccccCC-chhHHHHHhhccccceEEEeecCC
Q 000099 1121 VDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1121 ikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
....+|||||+|++.. ....+.+.+.......++++|++.
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 3578999999999853 223344555555566677777664
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=88.31 E-value=0.98 Score=51.64 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHHHhhcCCCCeEEEcCCCchHHHHHHHHH
Q 000099 1009 LQWMLSLYNNKLNGILADEMGLGKTVQVMALI 1040 (2240)
Q Consensus 1009 LqwLlsL~~n~lnGILADEMGLGKTIQAIALI 1040 (2240)
+..+........+.+|..++|+|||..+-++.
T Consensus 19 ~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 19 LEQVSHLAPLDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp HHHHHHHTTSCSCEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 33444444556788999999999997775544
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=87.87 E-value=0.65 Score=53.83 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=25.3
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
++..+||.|||..+|..+.... ....++||+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeec
Confidence 6789999999988877765443 344578888875
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=87.29 E-value=1.1 Score=53.04 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHhh---cCCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQWMLSLY---NNKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~---~n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
++.+...+...+... ....+.+|..+.|+|||..+-.++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555543333222 33456789999999999888777766543
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.52 E-value=1.3 Score=53.94 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=25.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
..+.||..+.|+|||..+-++... ...+++.|....+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~------~~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE------SNATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH------TTCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHh------hcCcEEEeeHHHhhccc
Confidence 356799999999999888666432 12455555554444433
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=86.14 E-value=3.9 Score=52.34 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=56.7
Q ss_pred HHHHHHHHHH-HhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecC-CCCHHHHHHHHHHHhcCCCCccEEEEec--cc
Q 000099 1331 WILDRILIKL-QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDG-TTSLEDRESAIVDFNSHDSDCFIFLLSI--RA 1406 (2240)
Q Consensus 1331 elLdrIL~kL-~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDG-sTs~eEReeaIk~FNs~Ds~~fVfLLST--rA 1406 (2240)
..|...|..+ ...+.++|||+.....++.+.+. .++.+.. .| +++ +.++++.|+..+ + .+|+++ ..
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~-q~~~~~---~~~~~~~~~~~~-~--~vl~~v~gg~ 448 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYV-ESEDSS---VEDLYSAISANN-K--VLIGSVGKGK 448 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEE-CCSSCC---HHHHHHHTTSSS-S--CEEEEESSCC
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEE-cCCCCC---HHHHHHHHHhcC-C--eEEEEEecce
Confidence 3344444444 34567899999888888877762 3444433 33 334 456788886322 2 366665 79
Q ss_pred ccccCCCC-----CCCeEEEcCCCC
Q 000099 1407 AGRGLNLQ-----SADTVIIYDPDP 1426 (2240)
Q Consensus 1407 GGeGLNLQ-----aADtVIifD~pW 1426 (2240)
..+|||++ .+..||+.-.|+
T Consensus 449 ~~EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 449 LAEGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp SCCSSCCEETTEESEEEEEEESCCC
T ss_pred ecccccccccCCcceeEEEEEcCCC
Confidence 99999999 378999987765
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.06 E-value=6.7 Score=47.28 Aligned_cols=44 Identities=7% Similarity=-0.094 Sum_probs=29.0
Q ss_pred cHHHHHHHH-HHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1002 RDYQIVGLQ-WMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1002 RPYQleGLq-wLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
|+-|..-|. ++..... .+.+.+|...+|+|||.++-.++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444555554 3333332 3344588999999999999888877764
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=85.84 E-value=0.3 Score=51.25 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=18.9
Q ss_pred hcCCCCeEEEcCCCchHHHHHHHH
Q 000099 1016 YNNKLNGILADEMGLGKTVQVMAL 1039 (2240)
Q Consensus 1016 ~~n~lnGILADEMGLGKTIQAIAL 1039 (2240)
.....+.+|..+.|+|||..+-++
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHHGGG
T ss_pred hCCCCcEEEECCCCccHHHHHHHH
Confidence 345678899999999999776444
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=85.67 E-value=1.6 Score=51.96 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=35.7
Q ss_pred cHHHHHHHHHHHHhhcCC----CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1002 RDYQIVGLQWMLSLYNNK----LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1002 RPYQleGLqwLlsL~~n~----lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
.+.....+.++......+ .+.+|..+.|+|||..+-++...+. ...+++.+...
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~~~~~~~ 106 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG----PDTPFTAIAGS 106 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC----SSCCEEEEEGG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc----ccCCcccccch
Confidence 456667776676655443 3568999999999988877765542 22365555533
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.46 E-value=1.3 Score=55.17 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=33.4
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
..|.||..+.|+|||+.|-++...+ ..+++.|....++..|.-|-.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccchHH
Confidence 4677999999999999987776543 236777777777766654443
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.46 E-value=1.6 Score=49.28 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=18.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAY 1042 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~ 1042 (2240)
..+.+|..+.|+|||..+-++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345689999999999888766543
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.42 E-value=1.2 Score=51.53 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=25.6
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecCC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTP 1160 (2240)
+..+|||||+|.+... ...+.+.+.......+++++++.
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~ 146 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQ 146 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESC
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCC
Confidence 4789999999998532 12344445555556677777765
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=85.24 E-value=3.4 Score=47.49 Aligned_cols=35 Identities=11% Similarity=0.122 Sum_probs=24.4
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA 1060 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S 1060 (2240)
++.-+||.|||...+-.+..+.. . ...+||+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~-~--g~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIY-A--KQKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH-T--TCCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-c--CCceEEEEecc
Confidence 77889999999777766644433 2 34678888753
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=84.13 E-value=2.3 Score=49.12 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=19.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYL 1043 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~L 1043 (2240)
..+.+|..+.|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999998886665543
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=83.19 E-value=0.92 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=17.4
Q ss_pred eEEEcCCCchHHHHHHHHHHHH
Q 000099 1022 GILADEMGLGKTVQVMALIAYL 1043 (2240)
Q Consensus 1022 GILADEMGLGKTIQAIALIa~L 1043 (2240)
.++....|+|||..++.++..+
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 4788899999999887765443
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=82.94 E-value=2.8 Score=49.74 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=24.7
Q ss_pred CcceEecccccccCCc-hhHHHHHhhccccceEEEeecC
Q 000099 1122 DWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGT 1159 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGT 1159 (2240)
.+.+|||||+|.+... ...+.+.+.......+++++++
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 5789999999998432 2234444544455667777765
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=82.89 E-value=1.3 Score=55.15 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
.+.||..+.|+|||..+-++...+ ...+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 456899999999998887766543 12355555555555444
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.54 E-value=1.7 Score=52.59 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=24.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH
Q 000099 1019 KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV 1061 (2240)
Q Consensus 1019 ~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL 1061 (2240)
..+.+|..+.|+|||..+-++...+ ..+++.|....+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHh
Confidence 4567899999999998887665432 235555544433
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.16 E-value=1.1 Score=53.43 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=19.2
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYL 1043 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~L 1043 (2240)
.+.+|..+.|+|||..+-++...+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 456899999999998887766543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=82.02 E-value=2 Score=50.52 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=26.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNW 1065 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW 1065 (2240)
.+.+.+|..+.|+|||..+-++...+ ..+++.|....++..|
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 89 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEECHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEEhHHHHhhh
Confidence 34567899999999998886665432 2355555444444433
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=81.71 E-value=4.7 Score=50.21 Aligned_cols=128 Identities=15% Similarity=0.038 Sum_probs=65.9
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEE-EEecc-
Q 000099 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCI-YYVGA- 1084 (2240)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVv-vy~Gs- 1084 (2240)
.+|..++.-+..+.-.+|+...|+|||..++.++..... ....++|++.-..-..++...+.....++..- +..|.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~~g~l 265 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQL 265 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCCGGGC
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHhCCCC
Confidence 446677654445555699999999999988887776653 22357888875433333333322111111000 00121
Q ss_pred -hhhHhHHHHHHHhhcCCcEEEE-----cHHHHHHhh-hhccccCcceEecccccccCC
Q 000099 1085 -KDQRSRLFSQEVAALKFNVLVT-----TYEFIMYDR-SKLSKVDWKYIIIDEAQRMKD 1136 (2240)
Q Consensus 1085 -kdeRk~l~~qei~~~~fdVVIT-----TYE~L~kD~-s~L~kikWd~VIIDEAHrLKN 1136 (2240)
.....++...........++|. |...+.... ........++||||..+.+..
T Consensus 266 ~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 266 TDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp CHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 1122222111111223355553 334443322 222345789999999999864
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=81.35 E-value=2.2 Score=48.16 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=24.0
Q ss_pred EEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech
Q 000099 1023 ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059 (2240)
Q Consensus 1023 ILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~ 1059 (2240)
++..+||+|||...+-.+..... . ...+|++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~-~--~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQI-A--QYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH-T--TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH-c--CCeEEEEccc
Confidence 67899999999766666655443 2 2567888775
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=80.82 E-value=2.5 Score=49.77 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=26.0
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV 1063 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~ 1063 (2240)
.+.+|..+.|+|||..+-++...+ ..+++.|....+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~ 74 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELES 74 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhh
Confidence 456788999999999887776554 23556665444443
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=80.80 E-value=1.6 Score=56.50 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHH
Q 000099 1007 VGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIA 1041 (2240)
Q Consensus 1007 eGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa 1041 (2240)
..+..+......+...+|.-+.|+|||..+-++..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhc
Confidence 33444444444667889999999999987755544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2240 | ||||
| d1z63a1 | 230 | c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h | 5e-47 | |
| d1z3ix2 | 298 | c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fis | 3e-44 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 2e-31 | |
| d1z5za1 | 244 | c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 h | 3e-17 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 2e-14 | |
| d2fz4a1 | 206 | c.37.1.19 (A:24-229) DNA repair protein RAD25 {Arc | 6e-14 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 2e-12 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 1e-07 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 1e-05 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 2e-05 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 8e-04 | |
| d1eqfa2 | 128 | a.29.2.1 (A:1498-1625) TAFII250 double bromodomain | 8e-04 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 8e-04 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 0.003 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 0.004 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 167 bits (422), Expect = 5e-47
Identities = 74/252 (29%), Positives = 126/252 (50%), Gaps = 28/252 (11%)
Query: 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 1051
+P ++ LR YQI G WM + LAD+MGLGKT+Q +A+ + +
Sbjct: 5 EPYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN-ELT 62
Query: 1052 PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI 1111
P L+I P +VL NW+ EL K+ P + + + + +++++TTY +
Sbjct: 63 PSLVICPLSVLKNWEEELSKFAPHLRFAVFHEDRSKIKL--------EDYDIILTTYAVL 114
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSL 1171
+ D +L +V+WKYI+IDEAQ +K+ ++ + + + + + R+ LTGTP++N + +LWS+
Sbjct: 115 LRDT-RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSI 173
Query: 1172 LNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLRR 1231
+ L P + + F F+ P +K L I+ PF+LRR
Sbjct: 174 MTFLNPGLLGSYSEFKSKFATPIKKGDNMA---------------KEELKAIISPFILRR 218
Query: 1232 RVED--VEGSLP 1241
D + LP
Sbjct: 219 TKYDKAIINDLP 230
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 161 bits (407), Expect = 3e-44
Identities = 67/249 (26%), Positives = 117/249 (46%), Gaps = 18/249 (7%)
Query: 998 AGTLRDYQIVGLQWMLSLY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGP 1052
+ LR +Q G++++ N I+ADEMGLGKT+Q + LI L++ + P
Sbjct: 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKP 112
Query: 1053 H----LIIVPNAVLVNWKSELHKWLPS--VSCIYYVGAKDQR----SRLFSQEVAALKFN 1102
+++ P++++ NW +E+ KWL G+KD+ SQ+ +
Sbjct: 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTP 172
Query: 1103 VLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQ 1162
+L+ +YE L K +I DE R+K+ ++ L+ QRR+L++GTP+Q
Sbjct: 173 ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQ 232
Query: 1163 NDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQ 1222
NDL E +SL++ + + + F F P K +AD + + L
Sbjct: 233 NDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGR---DADASDKDRAAGEQKLQELIS 289
Query: 1223 ILEPFMLRR 1231
I+ ++RR
Sbjct: 290 IVNRCLIRR 298
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 125 bits (314), Expect = 2e-31
Identities = 85/350 (24%), Positives = 142/350 (40%), Gaps = 68/350 (19%)
Query: 1239 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298
LP K+ V+ C ++ +Q +Y K+ + K+ + +
Sbjct: 8 YLPVKIEQVVCCNLTPLQKELYKLFL------------KQAKPVESLQTGKISVSSLSSI 55
Query: 1299 MELRKTCNHPLLNYPYFSDLSK----------------DFLVKSCGKLWILDRILIKLQR 1342
L+K CNHP L Y + + GK+ +LD IL +
Sbjct: 56 TSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRT 115
Query: 1343 -TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401
T +V+L S T+ LD+ E+ + R+ +Y R+DGT S++ R + FN+ S FIF+
Sbjct: 116 TTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFM 175
Query: 1402 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISS 1461
LS +A G GLNL A+ ++++DPD NP N+EQA+AR R GQK+ + + +
Sbjct: 176 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLST------ 229
Query: 1462 HQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGRFDQRTTH 1521
G+IE I Q +K ++ V++ + +R
Sbjct: 230 --------------------------GTIEEKIL-QRQAHKKALSSCVVDEEQDVERHFS 262
Query: 1522 EERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFDQMDEE 1571
L +L +E+ +T HD R + + D
Sbjct: 263 LGELRELFSL--NEKTLSDT-HD---RFRCRRCVNGRQVRPPPDDSDCTC 306
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Score = 81.3 bits (199), Expect = 3e-17
Identities = 62/289 (21%), Positives = 116/289 (40%), Gaps = 53/289 (18%)
Query: 1243 KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELR 1302
K+ + C ++ Q+A+Y +D +R + + ++L+
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKR-----------KGMILSTLLKLK 49
Query: 1303 KTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEE 1362
+ +HP L V+ GK+ I+ + G ++ +F+ + I+
Sbjct: 50 QIVDHPALLKGGE------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRN 103
Query: 1363 YLQWRQLV-YRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421
++ + G S ++R+ I F ++ S FI L S++A G G+NL SA+ VI
Sbjct: 104 IIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL-SVKAGGFGINLTSANRVIH 162
Query: 1422 YDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1481
+D NP E+QA R +RIGQ R V V + +V
Sbjct: 163 FDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV-------------------------- 196
Query: 1482 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAG-RFDQRTTHEERRMTLE 1529
G++E I + +K + ++I++G + + EE R +E
Sbjct: 197 ------GTLEEKID-QLLAFKRSLFKDIISSGDSWITELSTEELRKVIE 238
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 73.8 bits (180), Expect = 2e-14
Identities = 32/266 (12%), Positives = 79/266 (29%), Gaps = 29/266 (10%)
Query: 1210 TEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVS--------IVLRCRMSAIQSAIYD 1261
E + L ++L + + S P + ++ M+ +
Sbjct: 12 PEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRG 71
Query: 1262 WIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSK- 1320
+ + + K L + + +
Sbjct: 72 LLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISL 131
Query: 1321 ----DFLVKSCGKLWILDRILIKL--QRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRI 1374
+ K+ L I+ + ++ ++++F+ + + L + +R
Sbjct: 132 LVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF 191
Query: 1375 DGTTSLEDR--------ESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDP 1426
G S E+ + + +F + + L++ GL++ D V+ Y+P P
Sbjct: 192 VGQASKENDRGLSQREQKLILDEFARGEFNV---LVATSVGEEGLDVPEVDLVVFYEPVP 248
Query: 1427 NPKNEEQAVARAHRIGQKREVKVIYM 1452
+ Q R R G+ +VI +
Sbjct: 249 SAIRSIQ---RRGRTGRHMPGRVIIL 271
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.7 bits (172), Expect = 6e-14
Identities = 31/169 (18%), Positives = 51/169 (30%), Gaps = 25/169 (14%)
Query: 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYG 1051
P +LRDYQ L+ L G + G GKT A + +
Sbjct: 62 TPYFDAEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHV-----AMAAINELSTP 112
Query: 1052 PHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI 1111
+++ A+ WK L + + K+ + +TY+
Sbjct: 113 TLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTV-------------STYDSA 159
Query: 1112 MYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTP 1160
+ KL + +I DE + + RL LT T
Sbjct: 160 YVNAEKLGN-RFMLLIFDEVHHLPAE--SYVQIAQMSIAPFRLGLTATF 205
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 66.5 bits (161), Expect = 2e-12
Identities = 27/213 (12%), Positives = 74/213 (34%), Gaps = 22/213 (10%)
Query: 1239 SLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRC 1298
L + ++ + Y+ + + R + + +A+ + +
Sbjct: 2 HLAKYTIKRIFVPLAEDERVEYEKREKVYK-------QFLRARGITLRRAEDFNKIVMAS 54
Query: 1299 MELRKTCNHPLLNYPYFSDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLD 1358
+ + ++ S K+ L IL + + ++++F+ +L+
Sbjct: 55 GYDERAYEALRAW-----EEARRIAFNSKNKIRKLREILERHR--KDKIIIFTRHNELVY 107
Query: 1359 ILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADT 1418
+ + I TS E+RE + + F ++S + G+++ A+
Sbjct: 108 RISKVFL-----IPAITHRTSREEREEIL---EGFRTGRFRAIVSSQVLDEGIDVPDANV 159
Query: 1419 VIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451
+I + + Q + R R + ++ V+Y
Sbjct: 160 GVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 192
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 39/189 (20%), Positives = 71/189 (37%), Gaps = 12/189 (6%)
Query: 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN 1059
R YQ V + N ++ GLGKT+ +A++ G L++ P
Sbjct: 9 QPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTL--IAMMIAEYRLTKYGGKVLMLAPT 61
Query: 1060 AVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFI-MYDRSKL 1118
LV +E + L ++ V ++S + A ++ T ++
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRI 121
Query: 1119 SKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRCQRR-LLLTGTPLQNDLKELWSLLNLL 1175
S D I+ DEA R +AR+ R + LT +P + +++ ++N L
Sbjct: 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASP-GSTPEKIMEVINNL 180
Query: 1176 LPEVFDNRK 1184
E + R
Sbjct: 181 GIEHIEYRS 189
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 45.1 bits (105), Expect = 1e-05
Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 17/150 (11%)
Query: 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLP 1074
+ + +L G GKT + + I + L + ++ +
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK 62
Query: 1075 SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRM 1134
+ + + + + V+W+ II+DEA +
Sbjct: 63 FHTQAFSAHGSGR------------EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL 110
Query: 1135 KDRESVLARDLDRYRCQRR----LLLTGTP 1160
D S+ AR +R + +L+T TP
Sbjct: 111 -DPASIAARGWAAHRARANESATILMTATP 139
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 46.0 bits (108), Expect = 2e-05
Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 16/181 (8%)
Query: 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVP 1058
YQ + L LN G+++ L Y +E LIIVP
Sbjct: 112 IEPHWYQKDAVFEGLVNRRRILN----LPTSAGRSLIQALLARYYLENYEGKI--LIIVP 165
Query: 1059 NAVLVN-WKSELHKWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK 1117
L + + + + A V+V T++ + + K
Sbjct: 166 TTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDA----PVVVGTWQ-TVVKQPK 220
Query: 1118 LSKVDWKYIIIDEAQRMKDRESVLARDLDRYR-CQRRLLLTGTPLQNDLKELWSLLNLLL 1176
+ ++ DE + ++ + C + L+G+ + +
Sbjct: 221 EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLRDGKANI-MQYVGMFG 277
Query: 1177 P 1177
Sbjct: 278 E 278
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 41.3 bits (96), Expect = 8e-04
Identities = 33/245 (13%), Positives = 75/245 (30%), Gaps = 18/245 (7%)
Query: 1329 KLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIV 1388
+ L IL ++ G ++++ + + + E L+ + ++
Sbjct: 13 SISTLSSIL---EKLGTGGIIYARTGEEAEEIYESLK------NKFRIGIVTATKKGDYE 63
Query: 1389 DFNSHDSDCFIFLLSIRA-AGRGLNLQSA-DTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446
F + D I RGL+L + + + + +
Sbjct: 64 KFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLSPQMV 119
Query: 1447 VKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMA 1506
+ Y+ VD+I E ++ + GK+R + ++ + D+
Sbjct: 120 KLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKER--PQAKDVVVREGEVIFPDLR 177
Query: 1507 DEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEDEVELFD 1566
+ +GR R LL D+ + L ++ D +L
Sbjct: 178 TYIQGSGRTS-RLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLSR 236
Query: 1567 QMDEE 1571
++DE
Sbjct: 237 ELDES 241
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (92), Expect = 8e-04
Identities = 10/57 (17%), Positives = 27/57 (47%)
Query: 1987 DLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQFYGFSHEVRSEARKVHDLFFDLLK 2043
DL I + + + +Y + DV +L ++++ G + A+++ ++ + L
Sbjct: 52 DLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLT 108
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 40.2 bits (93), Expect = 8e-04
Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 9/139 (6%)
Query: 1332 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFN 1391
++ I +++R R L+ + K+ + L +YL+ + + +R I D
Sbjct: 20 LIGEIRERVER-NERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLR 78
Query: 1392 SHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPD-----PNPKNEEQAVARAHRIGQKRE 1446
D + I GL++ V I D D + ++ Q + RA R
Sbjct: 79 LGKYDVLV---GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHV 135
Query: 1447 VKVIYMEAVVDKISSHQKE 1465
+ +I+ + +
Sbjct: 136 IMYADTITKSMEIAIQETK 154
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 37.9 bits (87), Expect = 0.003
Identities = 23/144 (15%), Positives = 35/144 (24%), Gaps = 23/144 (15%)
Query: 1022 GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVN-WKSELHKWLPSVSCIY 1080
L G GK+ +V A L++ P+ + + + K I
Sbjct: 11 AHLHAPTGSGKSTKV---PAAYAAQGYKV---LVLNPSVAATLGFGAYMSKAHGVDPNIR 64
Query: 1081 YVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMK---DR 1137
T +F+ D II DE
Sbjct: 65 TGVRTITTGS----------PITYSTYGKFLADGGCSGGAYD--IIICDECHSTDATSIL 112
Query: 1138 ESVLARDLDRYRCQRRLLL-TGTP 1160
D R ++L T TP
Sbjct: 113 GIGTVLDQAETAGARLVVLATATP 136
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 38.0 bits (87), Expect = 0.004
Identities = 29/143 (20%), Positives = 48/143 (33%), Gaps = 6/143 (4%)
Query: 1322 FLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLE 1381
V + L R+L + L+F + L L+ I G S
Sbjct: 9 VEVNENERFEALCRLL---KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQS 65
Query: 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRI 1441
RE I F I + RG+++ + VI Y NP++ + R R
Sbjct: 66 QREKVIRLFKQKKIRILI---ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRA 122
Query: 1442 GQKREVKVIYMEAVVDKISSHQK 1464
G+K + I K+ ++
Sbjct: 123 GKKGKAISIINRREYKKLRYIER 145
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2240 | |||
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 100.0 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 100.0 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 99.82 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 99.81 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.79 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.77 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.77 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 99.75 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.75 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 99.74 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.74 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.73 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.73 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.73 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 99.73 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.71 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.71 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.7 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.68 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.63 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.63 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.56 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.55 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.49 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.46 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.36 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.32 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.3 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.25 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.2 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.19 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.18 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.17 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.14 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.14 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.11 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.09 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.04 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.02 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 98.98 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.97 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 98.95 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.84 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.81 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 98.7 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.14 | |
| d3d7ca1 | 102 | GCN5 {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.94 | |
| d1wuma1 | 118 | P300/CAF histone acetyltransferase bromodomain {Hu | 97.93 | |
| d1eqfa2 | 128 | TAFII250 double bromodomain module {Human (Homo sa | 97.88 | |
| d1e6ia_ | 111 | GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.88 | |
| d1eqfa1 | 139 | TAFII250 double bromodomain module {Human (Homo sa | 97.66 | |
| d3dwya1 | 114 | CREB-binding protein, CBP {Human (Homo sapiens) [T | 97.48 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 96.89 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 96.39 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.23 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 95.44 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.38 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.08 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.71 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 92.99 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 92.91 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.73 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.76 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.71 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.23 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 87.13 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.12 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 85.23 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 84.42 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 84.05 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 83.5 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.12 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 81.97 |
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.1e-38 Score=358.05 Aligned_cols=225 Identities=33% Similarity=0.674 Sum_probs=197.4
Q ss_pred cCCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHH
Q 000099 991 RQPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELH 1070 (2240)
Q Consensus 991 ~qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~ 1070 (2240)
-+|..+.. +|+|||++||.||..+...+.|||||||||||||+++|+++.+++. .+...++|||||.+++.+|..|+.
T Consensus 4 ~~P~~~~~-~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~-~~~~~~~LIv~p~~l~~~W~~e~~ 81 (230)
T d1z63a1 4 LEPYNIKA-NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELS 81 (230)
T ss_dssp CCCCSCSS-CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHH
T ss_pred cCchhhhc-chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhh-cccccccceecchhhhhHHHHHHH
Confidence 47888865 8999999999999999999999999999999999999999988875 566679999999999999999999
Q ss_pred HHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcccc
Q 000099 1071 KWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (2240)
Q Consensus 1071 Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks 1150 (2240)
+|++...+..+.+.... ....+++|+|++|+.+.+. ..+..+.|++||+||||+++|..+..++++..+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~--------~~~~~~~vvi~~~~~~~~~-~~l~~~~~~~vI~DEah~~k~~~s~~~~~~~~l~a 152 (230)
T d1z63a1 82 KFAPHLRFAVFHEDRSK--------IKLEDYDIILTTYAVLLRD-TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKS 152 (230)
T ss_dssp HHCTTSCEEECSSSTTS--------CCGGGSSEEEEEHHHHTTC-HHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCE
T ss_pred hhcccccceeeccccch--------hhccCcCEEEeeHHHHHhH-HHHhcccceEEEEEhhhcccccchhhhhhhhhhcc
Confidence 99998888877655432 2235689999999999765 44677899999999999999999999999999999
Q ss_pred ceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHHhhHHHHH
Q 000099 1151 QRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQILEPFMLR 1230 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhklLrPFmLR 1230 (2240)
.+||+|||||++|++.|||++++||.|.+|++...|...|..++.... .....+|+.+|+||++|
T Consensus 153 ~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~~---------------~~~~~~L~~~l~~~~lR 217 (230)
T d1z63a1 153 KYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD---------------NMAKEELKAIISPFILR 217 (230)
T ss_dssp EEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC---------------HHHHHHHHHHHTTTEEC
T ss_pred ceEEEEecchHHhHHHHHHHHHHhhCCCcCCCHHHHHHHHhhhhhccC---------------HHHHHHHHHHhhccEEE
Confidence 999999999999999999999999999999999999999887765431 12355789999999999
Q ss_pred hhhhh--hccCCC
Q 000099 1231 RRVED--VEGSLP 1241 (2240)
Q Consensus 1231 RlKkD--VekdLP 1241 (2240)
|+|.| |..+||
T Consensus 218 r~K~d~~v~~dLP 230 (230)
T d1z63a1 218 RTKYDKAIINDLP 230 (230)
T ss_dssp CCTTCHHHHTTSC
T ss_pred EecCCccHhhcCC
Confidence 99999 677887
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=1.1e-38 Score=371.58 Aligned_cols=230 Identities=27% Similarity=0.453 Sum_probs=190.6
Q ss_pred CCCcHHHHHHHHHHHHhh-----cCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCC----CCCeEEEechHHHHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLY-----NNKLNGILADEMGLGKTVQVMALIAYLMEFKGN----YGPHLIIVPNAVLVNWKSEL 1069 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~-----~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~----~GP~LIVVP~SLL~QW~~Ef 1069 (2240)
..|||||++||+||+.++ .++.|||||||||||||+|+|+++.+++..... .+++|||||.+++.||..||
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~sl~~qW~~Ei 133 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccchhhHHHHHHH
Confidence 489999999999998764 467789999999999999999999998875443 34699999999999999999
Q ss_pred HHHCCC-CeEEEEecchhh-HhHHHHHHH----hhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHH
Q 000099 1070 HKWLPS-VSCIYYVGAKDQ-RSRLFSQEV----AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLAR 1143 (2240)
Q Consensus 1070 ~Kw~Ps-lkVvvy~Gskde-Rk~l~~qei----~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlsk 1143 (2240)
.+|++. +.+++++|.... ......... ....++|+|+||+.+.++...+..++|++|||||||+++|..++.++
T Consensus 134 ~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~l~~~~~~~vI~DEaH~ikn~~s~~~~ 213 (298)
T d1z3ix2 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYL 213 (298)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHH
T ss_pred HhhcCCceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhcccccceeeeecccccccccccchhhh
Confidence 999975 555566655433 222211111 12356899999999999999999999999999999999999999999
Q ss_pred HhhccccceEEEeecCCCCCCHHHHHHHHhhhcccccCChHHHHhhhcCCcccCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 000099 1144 DLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSQPFQKEGPTHNADDDWLETEKKVIIIHRLHQI 1223 (2240)
Q Consensus 1144 aLk~Lks~~RLLLTGTPLQNnL~ELwSLLnFLlP~iF~S~~sF~e~F~kPf~~~g~~~~~e~d~l~~Ee~~lii~RLhkl 1223 (2240)
++..+++.++|+|||||++|++.|||++++||.|+.|++...|.++|..|+.........+ .........+.+|+.+
T Consensus 214 a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~~~~~~~~F~~~f~~pi~~~~~~~~~~---~~~~~~~~~l~~L~~~ 290 (298)
T d1z3ix2 214 ALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASD---KDRAAGEQKLQELISI 290 (298)
T ss_dssp HHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCS---HHHHHHHHHHHHHHHH
T ss_pred hhhccccceeeeecchHHhhhhHHHHHHHHHhCCCcCCCHHHHHHHHhhHHHhCcccCCcH---HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998887654433332 2223333457789999
Q ss_pred hhHHHHHh
Q 000099 1224 LEPFMLRR 1231 (2240)
Q Consensus 1224 LrPFmLRR 1231 (2240)
|+||+|||
T Consensus 291 l~~~~lRR 298 (298)
T d1z3ix2 291 VNRCLIRR 298 (298)
T ss_dssp HHHHEECC
T ss_pred hhhheeCC
Confidence 99999997
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=100.00 E-value=9.6e-37 Score=364.01 Aligned_cols=236 Identities=33% Similarity=0.516 Sum_probs=195.8
Q ss_pred hhhc-cCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 000099 1234 EDVE-GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNY 1312 (2240)
Q Consensus 1234 kDVe-kdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~ 1312 (2240)
.||+ ++||+|++++|+|+||+.|+.+|+.+........... .. .....+++.++.||++||||+|+.
T Consensus 2 ~~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~-------~~-----~~~~~~L~~l~~LRkiCnHP~L~~ 69 (346)
T d1z3ix1 2 SDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQ-------TG-----KISVSSLSSITSLKKLCNHPALIY 69 (346)
T ss_dssp GGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSC-------TT-----CCCHHHHHHHHHHHHHHHCTHHHH
T ss_pred hhhhhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhh-------cC-----CchHHHHHHHHHHHHHhCCHHHhh
Confidence 3554 5899999999999999999999998876432111100 00 011345678899999999998742
Q ss_pred CC-------cc---------ccchhhHhhcccHHHHHHHHHHHHH-hcCCeEEEEecchhHHHHHHHHHHhcCceEEeec
Q 000099 1313 PY-------FS---------DLSKDFLVKSCGKLWILDRILIKLQ-RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRID 1375 (2240)
Q Consensus 1313 p~-------~~---------~ls~d~LirsSGKLelLdrIL~kL~-atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLD 1375 (2240)
.. +. ..........|+|+.+|..||..+. ..|+||||||+|+.++++|+++|..+|+.|++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~ 149 (346)
T d1z3ix1 70 EKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLD 149 (346)
T ss_dssp HHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred hhhccccccccchhhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccc
Confidence 11 00 0011223567999999999999875 6789999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehh
Q 000099 1376 GTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAV 1455 (2240)
Q Consensus 1376 GsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTV 1455 (2240)
|+|+.++|..+++.||+++.+.+|||+++++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++
T Consensus 150 G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~- 228 (346)
T d1z3ix1 150 GTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS- 228 (346)
T ss_dssp SSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE-
T ss_pred cchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEe-
Confidence 9999999999999999887788999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHhhhhhhhhhhccCCcccchhhhcccccchhcHHHHHHHHHHHhhhHHHHHHHhccc
Q 000099 1456 VDKISSHQKEDELRSGGTVDLEDDLAGKDRYIGSIEGLIRNNIQQYKIDMADEVINAGR 1514 (2240)
Q Consensus 1456 EEkI~s~q~eKe~ls~gtvdle~dl~gKdr~igSIEE~IlerIqe~KldmddkVIqAGk 1514 (2240)
.+||||+|+++ +..|..+++.|++.+.
T Consensus 229 -------------------------------~~TiEe~i~~~-~~~K~~l~~~v~~~~~ 255 (346)
T d1z3ix1 229 -------------------------------TGTIEEKILQR-QAHKKALSSCVVDEEQ 255 (346)
T ss_dssp -------------------------------TTSHHHHHHHH-HHHHHHTSCCCCSCSS
T ss_pred -------------------------------CCCHHHHHHHH-HHHHHHHHHHHhCCch
Confidence 37999999985 5778888888876544
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=8.3e-34 Score=321.86 Aligned_cols=220 Identities=25% Similarity=0.351 Sum_probs=172.7
Q ss_pred ceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccchhh
Q 000099 1243 KVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSDLSKDF 1322 (2240)
Q Consensus 1243 KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ls~d~ 1322 (2240)
|++++++|+||+.|+.+|+.+.......+... ........+++.+++||++|+||+++.... .
T Consensus 1 Kie~~v~~~ls~~Q~~~Y~~~~~~~~~~~~~~-----------~~~~~~~~iL~~l~~Lrqic~hP~l~~~~~------~ 63 (244)
T d1z5za1 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSV-----------TGIKRKGMILSTLLKLKQIVDHPALLKGGE------Q 63 (244)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHHHHHHHHTTCTHHHHCSC------C
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhc-----------ccchhHHHHHHHHHHHHhhhcCCccccccc------c
Confidence 67899999999999999998876532211110 011123456778899999999998864332 2
Q ss_pred HhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc-CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEE
Q 000099 1323 LVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR-QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFL 1401 (2240)
Q Consensus 1323 LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r-Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfL 1401 (2240)
.+..|+|+..|..+|.++...|+||||||+|+.++++|+.+|... |+.+.++||+++.++|.+++++|++ +..+.|||
T Consensus 64 ~~~~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vll 142 (244)
T d1z5za1 64 SVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN-NPSVKFIV 142 (244)
T ss_dssp CSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHH-CTTCCEEE
T ss_pred chhhhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhc-cccchhcc
Confidence 345689999999999999999999999999999999999999765 8999999999999999999999997 44568999
Q ss_pred EecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEehhHHHhhhhhhhhhhccCCcccchhhhc
Q 000099 1402 LSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGTVDLEDDLA 1481 (2240)
Q Consensus 1402 LSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvTVEEkI~s~q~eKe~ls~gtvdle~dl~ 1481 (2240)
+++.+||+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++
T Consensus 143 ~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~--------------------------- 195 (244)
T d1z5za1 143 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS--------------------------- 195 (244)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEE---------------------------
T ss_pred ccccccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEee---------------------------
Confidence 99999999999999999999999999999999999999999999999999976
Q ss_pred ccccchhcHHHHHHHHHHHhhhHHHHHHHhcc
Q 000099 1482 GKDRYIGSIEGLIRNNIQQYKIDMADEVINAG 1513 (2240)
Q Consensus 1482 gKdr~igSIEE~IlerIqe~KldmddkVIqAG 1513 (2240)
.+|||+.|++. ...|.++++.+++.+
T Consensus 196 -----~~Tiee~i~~~-~~~K~~~~~~~~~~~ 221 (244)
T d1z5za1 196 -----VGTLEEKIDQL-LAFKRSLFKDIISSG 221 (244)
T ss_dssp -----TTSHHHHHHHH-HHHCHHHHTTGGGGT
T ss_pred -----CCCHHHHHHHH-HHHHHHHHHHHHhCC
Confidence 37999999985 467888888887664
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=1.1e-20 Score=193.48 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=100.2
Q ss_pred ccCcHHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHH
Q 000099 1933 AKMSDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQF 2012 (2240)
Q Consensus 1933 ~kl~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqL 2012 (2240)
.+.++.+...|++||+.|.. |..+.+|+.+|++.++||||++ |++||||.+|++||++++|.++++|..||.|
T Consensus 8 ~~~~~~l~~~l~~il~~l~~------~~~a~~F~~pv~~~~~pdY~~i-I~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~l 80 (118)
T d1wuma1 8 PRDPDQLYSTLKSILQQVKS------HQSAWPFMEPVKRTEAPGYYEV-IRFPMDLKTMSERLKNRYYVSKKLFMADLQR 80 (118)
T ss_dssp CCSHHHHHHHHHHHHHHHHH------SSSCHHHHSCCCSSSSSSCTTT-CSSCCCHHHHHHHHTTTCCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh------CCCcCcccCCCChhhCcCHHHH-cCChhhHHHHHHHhcccccCchHHHHHHHHH
Confidence 36678899999999999974 5679999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2013 MLKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2013 Mf~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
||.||+.||+++|++|.+|..|+++|.++|+.+
T Consensus 81 i~~Na~~yn~~~s~~~~~A~~l~~~f~~~~~e~ 113 (118)
T d1wuma1 81 VFTNCKEYNPPESEYYKCANILEKFFFSKIKEA 113 (118)
T ss_dssp HHHHHHHHSCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999864
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=3e-20 Score=185.74 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
+.+...|++|+++|.. |..+.+|+.+|++.++||||++ |++||||.+|++||++++|.++++|..||.|||.|
T Consensus 1 d~L~~~l~~il~~l~~------~~~s~~F~~pv~~~~~pdY~~~-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~N 73 (102)
T d3d7ca1 1 DQLYTTLKNLLAQIKS------HPSAWPFMEPVKKSEAPDYYEV-IRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIAN 73 (102)
T ss_dssp HHHHHHHHHHHHHHHH------SGGGGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHh------CCCCCccCCCCChhhCcCHHHH-cCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHH
Confidence 3567789999999974 5668999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHH
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKI 2044 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k~ 2044 (2240)
|+.||+++|.+|.+|..|+++|.++||.
T Consensus 74 a~~yN~~~s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 74 CREYNPPDSEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999985
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=1.2e-20 Score=207.21 Aligned_cols=193 Identities=12% Similarity=0.142 Sum_probs=134.5
Q ss_pred cCCCCceEEEEEeccCHHHHHHHHHHHHccCcccCchhHHhhhhcChhhHHHHHHHHHHHHHHHHHHcCCCCCCCCCccc
Q 000099 1238 GSLPPKVSIVLRCRMSAIQSAIYDWIKATGTLRVDPEDEKRRVQKNPIYQAKVYKTLNNRCMELRKTCNHPLLNYPYFSD 1317 (2240)
Q Consensus 1238 kdLP~KvE~vV~c~LS~~Qr~LYk~L~~~~~l~ld~~~e~~~l~~~~~~~ak~~~sL~nilmqLRKICNHP~L~~p~~~~ 1317 (2240)
+.||+.....++|+|++.++..|+.+.......+...... ......+ . ..+...+.++.... .+..
T Consensus 1 k~L~py~v~~i~V~Lt~~E~~~Y~~~~~~~~~~~~~~~~~--~~~~~~~-----~------~~~~~~~~~~~~~~-~~~~ 66 (200)
T d2fwra1 1 KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT--LRRAEDF-----N------KIVMASGYDERAYE-ALRA 66 (200)
T ss_dssp CCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT--TTCCSSS-----T------TTTTTTCCSSSSST-TTHH
T ss_pred CcCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccc--hhhhHHH-----H------HHHHHhcCCHHHHH-HHHH
Confidence 4689999999999999999999976533211100000000 0000000 0 00011111111100 0000
Q ss_pred c--chhhHhhcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCC
Q 000099 1318 L--SKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDS 1395 (2240)
Q Consensus 1318 l--s~d~LirsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds 1395 (2240)
. ........+.|+..|..+|.+ ..++|+||||++..+++.|.+.|. +..+||.++.++|..++++|++++.
T Consensus 67 ~~~~~~i~~~~~~K~~~l~~ll~~--~~~~k~lvf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~R~~~l~~F~~~~~ 139 (200)
T d2fwra1 67 WEEARRIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRF 139 (200)
T ss_dssp HHHHHHHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSC
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHh--CCCCcEEEEeCcHHHHHHHHhhcC-----cceeeCCCCHHHHHHHHHHhhcCCe
Confidence 0 011223456799999999886 357899999999999999988773 4458999999999999999997554
Q ss_pred CccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc-eEEEEEEeh
Q 000099 1396 DCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR-EVKVIYMEA 1454 (2240)
Q Consensus 1396 ~~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK-eV~VyrLvT 1454 (2240)
+ +|++|+++++||||+.|++||+||++|||..++||+||++|+||.+ .|.||+|++
T Consensus 140 ~---vLv~~~~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~ 196 (200)
T d2fwra1 140 R---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELIS 196 (200)
T ss_dssp S---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred e---eeeecchhhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEec
Confidence 4 4789999999999999999999999999999999999999999965 689999875
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.77 E-value=4.7e-19 Score=195.70 Aligned_cols=143 Identities=28% Similarity=0.301 Sum_probs=110.4
Q ss_pred CCCccCCCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHH
Q 000099 992 QPSMLRAGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELH 1070 (2240)
Q Consensus 992 qPs~L~ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~ 1070 (2240)
.|..-...+|||||.+++++++. +.+|||+++||+|||++++.++..+ .+++|||||. .++.||.++|.
T Consensus 62 ~~~~~~~~~Lr~yQ~eav~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~Liv~p~~~L~~q~~~~~~ 131 (206)
T d2fz4a1 62 TPYFDAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLG 131 (206)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHG
T ss_pred CCCCCCCCCcCHHHHHHHHHHHh----CCCcEEEeCCCCCceehHHhHHHHh------cCceeEEEcccchHHHHHHHHH
Confidence 34433345899999999988764 5678999999999999988777543 3589999995 58889999999
Q ss_pred HHCCCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcccc
Q 000099 1071 KWLPSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRC 1150 (2240)
Q Consensus 1071 Kw~PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks 1150 (2240)
+|.+. .+..+.|... ....|+|+||+.+......+. ..|++|||||||++++. .+.+.+..+.+
T Consensus 132 ~~~~~-~~~~~~~~~~------------~~~~i~i~t~~~~~~~~~~~~-~~~~lvIiDEaH~~~a~--~~~~i~~~~~~ 195 (206)
T d2fz4a1 132 IFGEE-YVGEFSGRIK------------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAE--SYVQIAQMSIA 195 (206)
T ss_dssp GGCGG-GEEEESSSCB------------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTT--THHHHHHTCCC
T ss_pred hhccc-chhhcccccc------------cccccccceehhhhhhhHhhC-CcCCEEEEECCeeCCcH--HHHHHHhccCC
Confidence 98654 3445554321 234799999999987765543 37999999999999753 35566777888
Q ss_pred ceEEEeecCC
Q 000099 1151 QRRLLLTGTP 1160 (2240)
Q Consensus 1151 ~~RLLLTGTP 1160 (2240)
.++|+||||+
T Consensus 196 ~~~lgLTATl 205 (206)
T d2fz4a1 196 PFRLGLTATF 205 (206)
T ss_dssp SEEEEEEESC
T ss_pred CcEEEEecCC
Confidence 9999999997
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=2.6e-19 Score=181.41 Aligned_cols=102 Identities=14% Similarity=0.266 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhh
Q 000099 1941 RRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAMQF 2020 (2240)
Q Consensus 1941 ~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~~y 2020 (2240)
+.|++||++|..+ ..+.+|+.+|++.++|+||++ |++||||.+|+.||++++|.++++|..||.|||.||+.|
T Consensus 6 ~~l~~il~~l~~~------~~a~pF~~pvd~~~~pdY~~v-I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 78 (111)
T d1e6ia_ 6 AAIQNILTELQNH------AAAWPFLQPVNKEEVPDYYDF-IKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMY 78 (111)
T ss_dssp HHHHHHHHHHHHS------TTCGGGSSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC------CCChhhcCCCCchhCcCHHHH-cCCchhHHHHHHHHHccccchHHHHHHHHHHHHHHHHHH
Confidence 5799999999744 559999999999999999999 999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhCCCCh
Q 000099 2021 YGFSHEVRSEARKVHDLFFDLLKIAFPDTD 2050 (2240)
Q Consensus 2021 n~~~sev~~dA~~L~~~F~~~~k~~fP~~~ 2050 (2240)
|+++|.+|.+|..|+++|.++|+. +|++.
T Consensus 79 N~~~s~i~~~A~~l~~~f~~~~~~-ipe~~ 107 (111)
T d1e6ia_ 79 NGENTSYYKYANRLEKFFNNKVKE-IPEYS 107 (111)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHT-SGGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-hhccc
Confidence 999999999999999999999975 67653
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1.8e-18 Score=181.68 Aligned_cols=100 Identities=14% Similarity=0.185 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 000099 1939 IQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKGAM 2018 (2240)
Q Consensus 1939 mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~Na~ 2018 (2240)
++..|.+|++.|. .+..++.|..++++.++||||++ |++||||.+|..||+.++|.++++|..||.|||+||+
T Consensus 27 l~~~l~~il~~l~------~~~~s~pF~~Pvd~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~ 99 (139)
T d1eqfa1 27 LSSILESIINDMR------DLPNTYPFHTPVNAKVVKDYYKI-ITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSA 99 (139)
T ss_dssp HHHHHHHHHHHHH------TSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------cCCCchhhhCCCChhhccCHHHH-cCChhhHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHH
Confidence 6778999999887 34558899999999999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2019 QFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2019 ~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
.||+++|.+|.+|..|+++|.++|+..
T Consensus 100 ~yN~~~s~i~~~A~~L~~~~~~~~~~~ 126 (139)
T d1eqfa1 100 TYNGPKHSLTQISQSMLDLCDEKLKEK 126 (139)
T ss_dssp HHTCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999874
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=2.8e-18 Score=184.73 Aligned_cols=120 Identities=17% Similarity=0.241 Sum_probs=110.1
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..|..+|... .+.|+||||+++.+++.|..+|...|+.+..++|+++.++|..++..|+.+... +|++|
T Consensus 15 ~~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~---ilv~T 89 (171)
T d1s2ma2 15 EERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVCS 89 (171)
T ss_dssp CGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEES
T ss_pred CHHHHHHHHHHHHHhC--CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCccc---cccch
Confidence 3456999999999763 578999999999999999999999999999999999999999999999986665 79999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEE
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKV 1449 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~V 1449 (2240)
+++++|||++.+++||+||+|||+..|+||+||++|.|+++.|..
T Consensus 90 d~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~ 134 (171)
T d1s2ma2 90 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAIN 134 (171)
T ss_dssp SCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEE
T ss_pred hHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEE
Confidence 999999999999999999999999999999999999998876543
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.5e-18 Score=176.43 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=95.4
Q ss_pred cHHHHHHHHHHHHHHHHhhccCCCcchhhhhhh--cccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHH
Q 000099 1936 SDVIQRRCKNVISKLQRRIEKEGHQIVPLLTDL--WKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFM 2013 (2240)
Q Consensus 1936 ~~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~--p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLM 2013 (2240)
++.+++.|..++++|... ...+..|+.+ |++.++||||++ |++||||.+|+.||++++|.++++|..||.||
T Consensus 4 p~el~~~l~~~l~~l~~~-----~p~a~pF~~pvd~~~~~~pdY~~i-I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li 77 (114)
T d3dwya1 4 PEELRQALMPTLEALYRQ-----DPESLPFRQPVDPQLLGIPDYFDI-VKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLM 77 (114)
T ss_dssp HHHHHHHHHHHHHHHHTC-----TTTTGGGSSCCCHHHHTCTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc-----CcCCCccCCCCChhhccCCCHHHH-cCCCCCHHHHHHHHHcCccccHHHHHHHHHHH
Confidence 577899999999999642 2467789998 667799999999 99999999999999999999999999999999
Q ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2014 LKGAMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2014 f~Na~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
|.||+.||+++|.+|.+|..|+++|.++++..
T Consensus 78 ~~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i 109 (114)
T d3dwya1 78 FNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPV 109 (114)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988764
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=7.7e-18 Score=181.23 Aligned_cols=121 Identities=22% Similarity=0.236 Sum_probs=110.8
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
..+.|+..|.++|..+ .+.|+||||++...++.|.++|...|+.+..+||+++.++|..+++.|++++.. +|++|
T Consensus 10 ~~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~---iLv~T 84 (168)
T d1t5ia_ 10 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVAT 84 (168)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEES
T ss_pred ChHHHHHHHHHHHHhC--CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccce---eeecc
Confidence 4467999999998875 467999999999999999999999999999999999999999999999976655 68999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+++++|||++.+++||+||+|||+..|+||+||++|.|++..|..+
T Consensus 85 ~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l 130 (168)
T d1t5ia_ 85 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITF 130 (168)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEE
T ss_pred ccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEE
Confidence 9999999999999999999999999999999999999988766433
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.73 E-value=5.9e-18 Score=179.39 Aligned_cols=119 Identities=23% Similarity=0.288 Sum_probs=108.1
Q ss_pred cccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1326 SCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1326 sSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
...|+..|.++|. ..+.++||||++..+++.|..+|...|+.+..++|.++..+|..++++|+.++.. +|++|+
T Consensus 13 ~~~K~~~L~~ll~---~~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~---ilv~T~ 86 (155)
T d1hv8a2 13 ENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIATD 86 (155)
T ss_dssp GGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEECT
T ss_pred hHHHHHHHHHHHc---cCCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccce---eeeehh
Confidence 3468888888775 3567899999999999999999999999999999999999999999999986655 799999
Q ss_pred cccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1406 AAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1406 AGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
++++|||++.+++||+||+|||+..|+||+||++|.|++..+.++
T Consensus 87 ~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~ 131 (155)
T d1hv8a2 87 VMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISI 131 (155)
T ss_dssp THHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEE
T ss_pred HHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEE
Confidence 999999999999999999999999999999999999988766543
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=6.9e-18 Score=180.73 Aligned_cols=120 Identities=21% Similarity=0.287 Sum_probs=106.1
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000099 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrA 1406 (2240)
..|+.+|..++..+ ...++||||+++..++.|...|...|+.+..++|.++..+|..+++.|+.++.. +|+||++
T Consensus 12 e~K~~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~---iLv~Tdv 86 (162)
T d1fuka_ 12 EYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDL 86 (162)
T ss_dssp GGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGG
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccc---eeecccc
Confidence 46999999998764 467999999999999999999999999999999999999999999999987666 7999999
Q ss_pred ccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1407 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1407 GGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++|||++.+++||+||+|||+..|+||+||++|.|++..+..+.
T Consensus 87 ~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~ 131 (162)
T d1fuka_ 87 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFV 131 (162)
T ss_dssp GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEE
T ss_pred ccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEc
Confidence 999999999999999999999999999999999999987765553
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.73 E-value=7.8e-18 Score=192.31 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=81.7
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEE-
Q 000099 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVI- 1420 (2240)
Q Consensus 1342 atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVI- 1420 (2240)
..++++||||.....++.+...|...|+.+..++|.+....| ..|..+... +|++|++.+.|+|+ .+++||
T Consensus 176 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~~~~~~~~~---~lvaT~~~~~G~~~-~~~~Vi~ 247 (305)
T d2bmfa2 176 DFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRTNDWD---FVVTTDISEMGANF-KAERVID 247 (305)
T ss_dssp SSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----GGGGTSCCS---EEEECGGGGTTCCC-CCSEEEE
T ss_pred hhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH----hhhhccchh---hhhhhHHHHhcCCC-CccEEEE
Confidence 456789999999999999999999999999999999865544 456654333 79999999999999 566654
Q ss_pred ---------EcCCC----------CChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1421 ---------IYDPD----------PNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1421 ---------ifD~p----------WNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+||++ -++..++|++||++|.|+.....++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~ 297 (305)
T d2bmfa2 248 PRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIY 297 (305)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEE
T ss_pred cCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEE
Confidence 34443 46889999999999999887655443
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=4.7e-18 Score=176.22 Aligned_cols=107 Identities=13% Similarity=0.175 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCcchhhhhhhcccccCCCccccccCCccChHHHHhhhccCCCCCHHHHHHHHHHHHHh
Q 000099 1937 DVIQRRCKNVISKLQRRIEKEGHQIVPLLTDLWKRIETSGYVSGAGNNILDLRKIDQRVDRLEYNGVMELVSDVQFMLKG 2016 (2240)
Q Consensus 1937 ~~mq~kck~vl~kL~~~~d~~Gr~l~~~F~~~p~R~~~PdYY~v~I~~PiDL~~I~qri~~~eY~~v~ef~~DvqLMf~N 2016 (2240)
+.-|..+..+|+.|-.. .-..+..++.|+.++++.++||||++ |++||||.+|..||++++|.++++|..||.|||.|
T Consensus 4 ~~~~~~~~~il~~l~~~-~~~~~p~a~pF~~pVd~~~~PdY~~v-Ik~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 81 (128)
T d1eqfa2 4 DDDQVAFSFILDNIVTQ-KMMAVPDSWPFHHPVNKKFVPDYYKV-IVNPMDLETIRKNISKHKYQSRESFLDDVNLILAN 81 (128)
T ss_dssp CHHHHHHHHHHHHHHHH-TTTTSTTCGGGTSCCCTTTSTTHHHH-CSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH-HHHcCCCCChhcCCCCcccCcCHHHH-cCCcccHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 34455677777775322 23466789999999999999999999 99999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHHHHHHHh
Q 000099 2017 AMQFYGFSHEVRSEARKVHDLFFDLLKIA 2045 (2240)
Q Consensus 2017 a~~yn~~~sev~~dA~~L~~~F~~~~k~~ 2045 (2240)
|+.||+++|.+|.+|..|.++|.++++..
T Consensus 82 a~~yN~~~s~i~~~A~~L~~~~~~~l~~~ 110 (128)
T d1eqfa2 82 SVKYNGPESQYTKTAQEIVNVCYQTLTEY 110 (128)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998763
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.71 E-value=1.3e-17 Score=193.07 Aligned_cols=163 Identities=15% Similarity=0.153 Sum_probs=117.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCCCC-
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLPSV- 1076 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~Psl- 1076 (2240)
.+||+||.+++.+++. +.+|||+.+||+|||+++++++.++.... ..++|||||. +|+.||..+|.+|....
T Consensus 112 ~~~rdyQ~~av~~~l~----~~~~il~~pTGsGKT~i~~~i~~~~~~~~--~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~ 185 (282)
T d1rifa_ 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cccchHHHHHHHHHHh----cCCceeEEEcccCccHHHHHHHHHhhhcc--cceEEEEEcCchhHHHHHHHHHHhhcccc
Confidence 5899999999999987 56799999999999999988887766532 3589999995 68999999999986432
Q ss_pred -eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhcc-ccceEE
Q 000099 1077 -SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRY-RCQRRL 1154 (2240)
Q Consensus 1077 -kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~L-ks~~RL 1154 (2240)
.+....++.... ........|+|+|++.+.+....+. -+|++||+||||+++. ..+...+..+ .+.+||
T Consensus 186 ~~~~~~~~g~~~~------~~~~~~~~i~i~t~qs~~~~~~~~~-~~f~~VIvDEaH~~~a--~~~~~il~~~~~~~~rl 256 (282)
T d1rifa_ 186 AMIKKIGGGASKD------DKYKNDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLATG--KSISSIISGLNNCMFKF 256 (282)
T ss_dssp GGEEECSTTCSST------TCCCTTCSEEEECHHHHTTSCGGGG-GGEEEEEEETGGGCCH--HHHHHHTTTCTTCCEEE
T ss_pred ccceeecceeccc------ccccccceEEEEeeehhhhhccccc-CCCCEEEEECCCCCCc--hhHHHHHHhccCCCeEE
Confidence 333333322111 1112356899999999876543332 3699999999999974 2345556555 678999
Q ss_pred EeecCCCCCCHHHHHHHHhhhcc
Q 000099 1155 LLTGTPLQNDLKELWSLLNLLLP 1177 (2240)
Q Consensus 1155 LLTGTPLQNnL~ELwSLLnFLlP 1177 (2240)
+|||||-..... .|.|..++.|
T Consensus 257 GlTaT~~~~~~~-~~~l~g~~Gp 278 (282)
T d1rifa_ 257 GLSGSLRDGKAN-IMQYVGMFGE 278 (282)
T ss_dssp EECSSCCTTSTT-HHHHHHHHCE
T ss_pred EEEeecCCCCcc-eEEEeeecCC
Confidence 999999655543 4566665544
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.71 E-value=8.4e-18 Score=193.39 Aligned_cols=122 Identities=19% Similarity=0.291 Sum_probs=105.3
Q ss_pred ccHHHHHHHHHHHHH--hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCC--------CCHHHHHHHHHHHhcCCCC
Q 000099 1327 CGKLWILDRILIKLQ--RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGT--------TSLEDRESAIVDFNSHDSD 1396 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~--atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGs--------Ts~eEReeaIk~FNs~Ds~ 1396 (2240)
++|+..|.++|.++. ..++++||||+++.+++.+++.|...++++..++|. ++..+|..+++.|++++.+
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~ 221 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 221 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred CcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCc
Confidence 469999999998774 457899999999999999999999999999999885 4445799999999986554
Q ss_pred ccEEEEecccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEEEeh
Q 000099 1397 CFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEA 1454 (2240)
Q Consensus 1397 ~fVfLLSTrAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLvT 1454 (2240)
+|++|+++++||||+.|++||+||+||||..|+||+||++|.+ ++.+|.|++
T Consensus 222 ---vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~~---~~~~~~l~~ 273 (286)
T d1wp9a2 222 ---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM---PGRVIILMA 273 (286)
T ss_dssp ---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC---CSEEEEEEE
T ss_pred ---EEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCC---CCEEEEEEe
Confidence 6999999999999999999999999999999999999998854 455666654
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3.5e-17 Score=176.29 Aligned_cols=119 Identities=24% Similarity=0.290 Sum_probs=110.0
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000099 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrA 1406 (2240)
..|+..|..+|..+ .+.++||||++...++.+..+|...|+.+..++|.++.++|..+++.|+.+... +|++|++
T Consensus 19 ~~K~~~L~~ll~~~--~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~---iLv~Td~ 93 (168)
T d2j0sa2 19 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDV 93 (168)
T ss_dssp THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGG
T ss_pred HHHHHHHHHHHHhC--CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcCCcc---EEeccch
Confidence 35899999998764 567999999999999999999999999999999999999999999999987776 7999999
Q ss_pred ccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1407 AGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1407 GGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+++|||++.+++||+||+||++..|+||+||++|.|++..|..+
T Consensus 94 ~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~ 137 (168)
T d2j0sa2 94 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 137 (168)
T ss_dssp GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred hcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEE
Confidence 99999999999999999999999999999999999988766544
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.68 E-value=2e-16 Score=171.22 Aligned_cols=166 Identities=22% Similarity=0.242 Sum_probs=117.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEech-HHHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPN-AVLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~-SLL~QW~~Ef~Kw~P--sl 1076 (2240)
++|+||.++++++. +.|+|++.+||+|||++++.++...... ..+++|||||. .|+.||.++|.+++. ..
T Consensus 9 ~pr~~Q~~~~~~~~-----~~n~lv~~pTGsGKT~i~~~~~~~~~~~--~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~ 81 (200)
T d1wp9a1 9 QPRIYQEVIYAKCK-----ETNCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNLPPE 81 (200)
T ss_dssp CCCHHHHHHHHHGG-----GSCEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCSCGG
T ss_pred CCCHHHHHHHHHHh-----cCCeEEEeCCCCcHHHHHHHHHHHHHHh--cCCcEEEEcCchHHHHHHHHHHHHhhccccc
Confidence 68999999999875 3478999999999999888777666543 34689999995 578999999999975 46
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCchhHHHH--Hh-hccccc
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRESVLAR--DL-DRYRCQ 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~SKlsk--aL-k~Lks~ 1151 (2240)
.+..+.+......+. ....+++++++|++.+.... ..+....|++||+||||++.+....... .+ ......
T Consensus 82 ~v~~~~~~~~~~~~~----~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~~~ 157 (200)
T d1wp9a1 82 KIVALTGEKSPEERS----KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (200)
T ss_dssp GEEEECSCSCHHHHH----HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred ceeeeecccchhHHH----HhhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCCCC
Confidence 677776654433221 12345689999999997653 3344457899999999999765433222 11 123445
Q ss_pred eEEEeecCCCCCCHHHHHHHHhhhcc
Q 000099 1152 RRLLLTGTPLQNDLKELWSLLNLLLP 1177 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~ELwSLLnFLlP 1177 (2240)
+.|+|||||- +...++..+++.|..
T Consensus 158 ~~l~~SATp~-~~~~~~~~~~~~l~~ 182 (200)
T d1wp9a1 158 LVIGLTASPG-STPEKIMEVINNLGI 182 (200)
T ss_dssp CEEEEESCSC-SSHHHHHHHHHHTTC
T ss_pred cEEEEEecCC-CcHHHHHHHHhcCCc
Confidence 6899999993 444555555555543
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=8.7e-16 Score=169.77 Aligned_cols=122 Identities=19% Similarity=0.202 Sum_probs=109.9
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..|..+|.. ..+.++||||++...++.|..+|...|+.+..+||+++.++|.++++.|+.+... +|++|
T Consensus 13 ~~~~k~~~L~~~l~~--~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---ilvaT 87 (200)
T d1oywa3 13 EKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVAT 87 (200)
T ss_dssp ECSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEC
T ss_pred cCCcHHHHHHHHHHh--cCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccce---EEEec
Confidence 344578888777765 3567999999999999999999999999999999999999999999999986665 79999
Q ss_pred ccccccCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1405 RAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1405 rAGGeGLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+++|+|||++.+++||+||+|||+..|+|++||++|.|++..+.+++
T Consensus 88 d~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~ 134 (200)
T d1oywa3 88 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFY 134 (200)
T ss_dssp TTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred chhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEec
Confidence 99999999999999999999999999999999999999877766554
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.56 E-value=9.6e-15 Score=159.19 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=97.1
Q ss_pred HHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCC
Q 000099 1337 LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 1416 (2240)
Q Consensus 1337 L~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaA 1416 (2240)
+.+....++++||||+....++.|..+|...|+.+..+||.++.++|.+++++|+++..+ +|++|+++++|||++.+
T Consensus 24 i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~---vLVaTdv~~rGiDip~v 100 (181)
T d1t5la2 24 IRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLLREGLDIPEV 100 (181)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCS---EEEESCCCSSSCCCTTE
T ss_pred HHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCC---EEEehhHHHccCCCCCC
Confidence 444456789999999999999999999999999999999999999999999999987777 89999999999999999
Q ss_pred CeEEEcCCC-----CChhhHHHHhhhhhccCCc
Q 000099 1417 DTVIIYDPD-----PNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1417 DtVIifD~p-----WNP~~d~QAiGRAhRIGQK 1444 (2240)
++||+||+| +++..|+||+||++|.|..
T Consensus 101 ~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~ 133 (181)
T d1t5la2 101 SLVAILDADKEGFLRSERSLIQTIGRAARNANG 133 (181)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred CEEEEecCCcccccccHHHHHHHHHhhccccCc
Confidence 999999999 5788999999999999964
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.55 E-value=2.6e-14 Score=154.77 Aligned_cols=105 Identities=21% Similarity=0.277 Sum_probs=95.6
Q ss_pred HHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCC
Q 000099 1337 LIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSA 1416 (2240)
Q Consensus 1337 L~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaA 1416 (2240)
+.+....|.++||||....+++.|..+|...|+....+||+++..+|.+++++|..++.+ +|++|+++++|||++++
T Consensus 24 i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~---vLVaT~v~~~GiDip~V 100 (174)
T d1c4oa2 24 IRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINLLREGLDIPEV 100 (174)
T ss_dssp HHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCCCCTTCCCTTE
T ss_pred HHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeE---EEEeeeeeeeeccCCCC
Confidence 333446799999999999999999999999999999999999999999999999987666 79999999999999999
Q ss_pred CeEEEcCCCC-----ChhhHHHHhhhhhccCCc
Q 000099 1417 DTVIIYDPDP-----NPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1417 DtVIifD~pW-----NP~~d~QAiGRAhRIGQK 1444 (2240)
++||+||++- +...|+|++||++|-|..
T Consensus 101 ~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g 133 (174)
T d1c4oa2 101 SLVAILDADKEGFLRSERSLIQTIGRAARNARG 133 (174)
T ss_dssp EEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred cEEEEeccccccccchhHHHHHHhhhhhhcCCC
Confidence 9999999875 557799999999998754
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.49 E-value=3.6e-14 Score=154.86 Aligned_cols=162 Identities=18% Similarity=0.137 Sum_probs=110.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-Ce
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS-VS 1077 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps-lk 1077 (2240)
+|+|||.+++..+.. +.++||+.+||+|||.+++..+..... ..+++|+|||.. |+.+|..+|.+|++. ..
T Consensus 25 ~l~~~Q~~ai~~l~~----~~~~il~apTGsGKT~~a~l~i~~~~~---~~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~ 97 (202)
T d2p6ra3 25 ELFPPQAEAVEKVFS----GKNLLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (202)
T ss_dssp CCCCCCHHHHHHHTT----CSCEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCchhHHHHHHHHHHhh---ccCcceeecccHHHHHHHHHHHHHHhhcccc
Confidence 699999999988775 778999999999999987665554443 345899999966 788999999999874 45
Q ss_pred EEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh--ccccCcceEecccccccCCch--hHHHHHhhc---cc-
Q 000099 1078 CIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK--LSKVDWKYIIIDEAQRMKDRE--SVLARDLDR---YR- 1149 (2240)
Q Consensus 1078 Vvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~--L~kikWd~VIIDEAHrLKN~~--SKlskaLk~---Lk- 1149 (2240)
+..+.|....+ .......+|+++|+..+...... .....+++||+||+|++.+.. ......+.. +.
T Consensus 98 v~~~~~~~~~~------~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~ 171 (202)
T d2p6ra3 98 IGISTGDYESR------DEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (202)
T ss_dssp EEEECSSCBCC------SSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred ceeeccCcccc------cccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcccccchHHHHHHHHHHhcCC
Confidence 55666544333 12235678999999887654321 122367899999999997643 222223332 22
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcccc
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLPEV 1179 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP~i 1179 (2240)
..++|+||||- . ++.++ .+||....
T Consensus 172 ~~~~l~lSATl-~-n~~~~---~~~l~~~~ 196 (202)
T d2p6ra3 172 ALRVIGLSATA-P-NVTEI---AEWLDADY 196 (202)
T ss_dssp TCEEEEEECCC-T-THHHH---HHHTTCEE
T ss_pred CCcEEEEcCCC-C-cHHHH---HHHcCCCe
Confidence 34689999992 2 34443 35554443
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.46 E-value=1.6e-13 Score=153.11 Aligned_cols=161 Identities=19% Similarity=0.263 Sum_probs=107.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCC-
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSV- 1076 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Psl- 1076 (2240)
++++++|..++..++. +.+.++..+||+|||++++.++.++.. ..+.+|||+|+. |+.||.++|.+|+...
T Consensus 42 ~~p~~~Q~~~i~~~l~----g~~~~i~apTGsGKT~~~~~~~~~~~~---~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~ 114 (237)
T d1gkub1 42 GEPRAIQKMWAKRILR----KESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKAG 114 (237)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHC----CCCEEEEecCCChHHHHHHHHHHHHHH---hcCeEEEEeccHHHHHHHHHHHHHHHHHcC
Confidence 4789999999988876 788999999999999887766655443 335899999965 8899999999986532
Q ss_pred -----eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhc--c-
Q 000099 1077 -----SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR--Y- 1148 (2240)
Q Consensus 1077 -----kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~--L- 1148 (2240)
.+..+.+......+. .......+++|+|+|++.+.++...+ .+|++|||||+|.+........+.+.. |
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~Ilv~Tp~~l~~~~~~~--~~~~~vVvDE~d~~l~~~~~~~~~~~~~g~~ 191 (237)
T d1gkub1 115 VGTENLIGYYHGRIPKREKE-NFMQNLRNFKIVITTTQFLSKHYREL--GHFDFIFVDDVDAILKASKNVDKLLHLLGFH 191 (237)
T ss_dssp CSGGGSEEECCSSCCSHHHH-HHHHSGGGCSEEEEEHHHHHHCSTTS--CCCSEEEESCHHHHHTSTHHHHHHHHHTTEE
T ss_pred CceEEEEeeeecccchhhhh-hhhccccccceeccChHHHHHhhhhc--CCCCEEEEEChhhhhhcccchhHHHHhcCCh
Confidence 223333332222111 11223456899999999988765544 368999999999985433322222211 1
Q ss_pred -----------ccceEEEeecCCCCCCHHHHH
Q 000099 1149 -----------RCQRRLLLTGTPLQNDLKELW 1169 (2240)
Q Consensus 1149 -----------ks~~RLLLTGTPLQNnL~ELw 1169 (2240)
.....+++|||+-...-..|+
T Consensus 192 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~ 223 (237)
T d1gkub1 192 YDLKTKSWVGEARGCLMVSTATAKKGKKAELF 223 (237)
T ss_dssp EETTTTEEEECCSSEEEECCCCSCCCTTHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEeCCCCcccHHHHH
Confidence 112368889996544444443
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=9.8e-13 Score=143.39 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=113.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkV 1078 (2240)
.|||||.+++.-++. +.++|++.+||+|||++++..+.. ..+++++|+|.. ++.+|..+|..+.....+
T Consensus 25 ~~rp~Q~~ai~~~l~----g~~vlv~apTGsGKT~~~~~~~~~------~~~~~~~v~P~~~L~~q~~~~l~~~~~~~~~ 94 (206)
T d1oywa2 25 QFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL------LNGLTVVVSPLISLMKDQVDQLQANGVAAAC 94 (206)
T ss_dssp SCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH------SSSEEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCCCCcchhhhhhhh------ccCceEEeccchhhhhhHHHHHHhhcccccc
Confidence 799999999988765 678999999999999887554432 346889999975 678899999988654433
Q ss_pred EEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHh--hhhccccCcceEecccccccCCchh-------HHHHHhhccc
Q 000099 1079 IYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYD--RSKLSKVDWKYIIIDEAQRMKDRES-------VLARDLDRYR 1149 (2240)
Q Consensus 1079 vvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD--~s~L~kikWd~VIIDEAHrLKN~~S-------KlskaLk~Lk 1149 (2240)
............. .........+|+++|+..+..+ ...+...++.+||+||||.+..... .....+..+.
T Consensus 95 ~~~~~~~~~~~~~-~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l~~~~~ 173 (206)
T d1oywa2 95 LNSTQTREQQLEV-MTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFP 173 (206)
T ss_dssp ECTTSCHHHHHHH-HHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCT
T ss_pred cccccccccchhH-HHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeeeccccchHHHHHHHHHHHHhCC
Confidence 3333333333222 2345567789999999887544 2334455789999999999865322 1111222334
Q ss_pred cceEEEeecCCCCCCHHHHHHHHhhhcc
Q 000099 1150 CQRRLLLTGTPLQNDLKELWSLLNLLLP 1177 (2240)
Q Consensus 1150 s~~RLLLTGTPLQNnL~ELwSLLnFLlP 1177 (2240)
....++||||+-.....||...|.+-+|
T Consensus 174 ~~~ii~lSATl~~~v~~di~~~L~l~~p 201 (206)
T d1oywa2 174 TLPFMALTATADDTTRQDIVRLLGLNDP 201 (206)
T ss_dssp TSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred CCceEEEEeCCCHHHHHHHHHHcCCCCC
Confidence 4568999999633223567776666555
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.32 E-value=1.8e-12 Score=130.24 Aligned_cols=133 Identities=19% Similarity=0.222 Sum_probs=81.4
Q ss_pred hhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHH
Q 000099 1015 LYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQ 1094 (2240)
Q Consensus 1015 L~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~q 1094 (2240)
+++++.++||..+||+|||++++..+....... ...+||++|...+.+|..+. +....+.+.......
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~--~~~vli~~p~~~l~~q~~~~---~~~~~~~~~~~~~~~------- 70 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEA---FHGLDVKFHTQAFSA------- 70 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHH---TTTSCEEEESSCCCC-------
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhhc--CceeeeeecchhHHHHHHHH---hhhhhhhhccccccc-------
Confidence 467788999999999999999876655444322 35789999988655544332 233333222221110
Q ss_pred HHhhcCCcEEEEcHHHHHHh-hhhccccCcceEecccccccCCchhHH---HHHhhccccceEEEeecCC
Q 000099 1095 EVAALKFNVLVTTYEFIMYD-RSKLSKVDWKYIIIDEAQRMKDRESVL---ARDLDRYRCQRRLLLTGTP 1160 (2240)
Q Consensus 1095 ei~~~~fdVVITTYE~L~kD-~s~L~kikWd~VIIDEAHrLKN~~SKl---skaLk~Lks~~RLLLTGTP 1160 (2240)
.......+.++++..+... .......+|++|||||||++....... ...+......+.|+|||||
T Consensus 71 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTATP 139 (140)
T d1yksa1 71 -HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATP 139 (140)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred -ccccccchhhhhHHHHHHHHhccccccceeEEEEccccccChhhHHHHHHHHHHhhCCCCCEEEEEcCC
Confidence 1122334666666665443 344455689999999999984322221 1222234567899999999
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.30 E-value=2.7e-12 Score=131.29 Aligned_cols=125 Identities=19% Similarity=0.135 Sum_probs=85.6
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEEecchhhHhHHHHHHH
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYYVGAKDQRSRLFSQEV 1096 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkVvvy~GskdeRk~l~~qei 1096 (2240)
....+||..+||+|||++++.++. .....+||+||.. ++.||...|.+++.......+.|...
T Consensus 7 ~~~~~ll~apTGsGKT~~~~~~~~------~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~---------- 70 (136)
T d1a1va1 7 SFQVAHLHAPTGSGKSTKVPAAYA------AQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTI---------- 70 (136)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHH------TTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEE----------
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHH------HcCCcEEEEcChHHHHHHHHHHHHHHhhcccccccccccc----------
Confidence 345689999999999987654432 2345799999976 67889999999987655555444321
Q ss_pred hhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhH-HHHHhhccc---cceEEEeecCC
Q 000099 1097 AALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESV-LARDLDRYR---CQRRLLLTGTP 1160 (2240)
Q Consensus 1097 ~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SK-lskaLk~Lk---s~~RLLLTGTP 1160 (2240)
.....++++|+..+....... ..+|++|||||||++...... +...+..++ ....|+|||||
T Consensus 71 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 71 -TTGSPITYSTYGKFLADGGCS-GGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp -CCCCSEEEEEHHHHHHTTGGG-GCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred -ccccceEEEeeeeeccccchh-hhcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 234468888888876654322 237899999999998543322 333333332 33578999999
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=1.1e-11 Score=142.04 Aligned_cols=158 Identities=19% Similarity=0.234 Sum_probs=116.1
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC
Q 000099 999 GTLRDYQIVGLQWMLSLYNN--KLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS 1075 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n--~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps 1075 (2240)
.+|.+-|..+++-+..-... ..+.+|..+||+|||++++..+...+... ..++|+||+. |..||...|.+|++.
T Consensus 82 FeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g---~q~~~m~Pt~~La~Qh~~~~~~~f~~ 158 (264)
T d1gm5a3 82 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG---FQTAFMVPTSILAIQHYRRTVESFSK 158 (264)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT---SCEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred ccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcc---cceeEEeehHhhhHHHHHHHHHhhhh
Confidence 36889999999988876543 34679999999999999998887777532 4789999976 568899999999974
Q ss_pred --CeEEEEecch--hhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhh-cccc
Q 000099 1076 --VSCIYYVGAK--DQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLD-RYRC 1150 (2240)
Q Consensus 1076 --lkVvvy~Gsk--deRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk-~Lks 1150 (2240)
+.+.+++|.. .+|..++. .+..+..+|+|.|+..+..+.. -.+..+|||||-|++.-.. ...+. .-..
T Consensus 159 ~~~~v~~l~~~~~~~~r~~~~~-~~~~g~~~iiIGThsl~~~~~~---f~~LglviiDEqH~fgv~Q---r~~l~~~~~~ 231 (264)
T d1gm5a3 159 FNIHVALLIGATTPSEKEKIKS-GLRNGQIDVVIGTHALIQEDVH---FKNLGLVIIDEQHRFGVKQ---REALMNKGKM 231 (264)
T ss_dssp SSCCEEECCSSSCHHHHHHHHH-HHHSSCCCEEEECTTHHHHCCC---CSCCCEEEEESCCCC--------CCCCSSSSC
T ss_pred ccccceeeccccchHHHHHHHH-HHHCCCCCEEEeehHHhcCCCC---ccccceeeeccccccchhh---HHHHHHhCcC
Confidence 6777887754 44555544 4667889999999998875533 2357899999999984211 11111 1234
Q ss_pred ceEEEeecCCCCCCHH
Q 000099 1151 QRRLLLTGTPLQNDLK 1166 (2240)
Q Consensus 1151 ~~RLLLTGTPLQNnL~ 1166 (2240)
.+.|++||||+..++.
T Consensus 232 ~~~l~~SATPiprtl~ 247 (264)
T d1gm5a3 232 VDTLVMSATPIPRSMA 247 (264)
T ss_dssp CCEEEEESSCCCHHHH
T ss_pred CCEEEEECCCCHHHHH
Confidence 5789999999987743
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=7.6e-11 Score=129.88 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=111.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHC---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWL---PS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~---Ps 1075 (2240)
.+.|.|..++..++. +.+.|+..++|+|||+.++..+.............||+||+. +..|..+.+..+. +.
T Consensus 23 ~pt~iQ~~aip~il~----g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~ 98 (207)
T d1t6na_ 23 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 98 (207)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHHc----CCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhCCC
Confidence 689999999999886 889999999999999998877765544334445689999987 4555666666655 44
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc---hhHHHHHhhcccc
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR---ESVLARDLDRYRC 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~---~SKlskaLk~Lks 1150 (2240)
+++.++.|......... .......+|+|+|++.+..... .+.-.+..++||||||+|... ...+...+..+..
T Consensus 99 ~~~~~~~g~~~~~~~~~--~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~ 176 (207)
T d1t6na_ 99 VKVAVFFGGLSIKKDEE--VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 176 (207)
T ss_dssp CCEEEESCCSCHHHHHH--HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCS
T ss_pred ceeEEEeccccHHHHHH--HHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhhhcCCcHHHHHHHHHhCCC
Confidence 56777777654443321 2334578999999999876542 233346779999999998753 1223344444443
Q ss_pred -ceEEEeecCCCCCCHHHH
Q 000099 1151 -QRRLLLTGTPLQNDLKEL 1168 (2240)
Q Consensus 1151 -~~RLLLTGTPLQNnL~EL 1168 (2240)
...+++||| +...+.++
T Consensus 177 ~~Q~il~SAT-~~~~v~~l 194 (207)
T d1t6na_ 177 EKQVMMFSAT-LSKEIRPV 194 (207)
T ss_dssp SSEEEEEESC-CCTTTHHH
T ss_pred CCEEEEEeee-CCHHHHHH
Confidence 347888999 44555544
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=7e-11 Score=131.95 Aligned_cols=153 Identities=16% Similarity=0.178 Sum_probs=111.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHC--CCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWL--PSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw~--Psl 1076 (2240)
.+.|.|..++.+++. +.+.|+..++|+|||+.++..+...+.........||+||+..+ .|-..++.++. .++
T Consensus 39 ~pt~IQ~~aIp~il~----g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i 114 (222)
T d2j0sa1 39 KPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 114 (222)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHHC----CCCeEEEcCcchhhhhhhcccccccccccccCceeEEecchHHHHHHHHHHHHHHhCccce
Confidence 688999999999886 88899999999999999988776655444444568999998855 55556666665 356
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHHHHhhcccc-c
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC-Q 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lks-~ 1151 (2240)
++..+.|+....... .......+|+|+|++.+.... ..+......++||||||++.+. ...+...+..++. .
T Consensus 115 ~~~~~~g~~~~~~~~---~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~ 191 (222)
T d2j0sa1 115 QCHACIGGTNVGEDI---RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 191 (222)
T ss_dssp CEEEECTTSCHHHHH---HHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC
T ss_pred eEEEEeecccchhhH---HHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhHhhhcCcHHHHHHHHHhCCCCC
Confidence 777777765544332 122456799999999987642 2333346789999999999874 3445556666644 4
Q ss_pred eEEEeecC
Q 000099 1152 RRLLLTGT 1159 (2240)
Q Consensus 1152 ~RLLLTGT 1159 (2240)
..+++|||
T Consensus 192 Q~ilfSAT 199 (222)
T d2j0sa1 192 QVVLISAT 199 (222)
T ss_dssp EEEEEESC
T ss_pred EEEEEEEe
Confidence 57888999
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=7.2e-11 Score=129.97 Aligned_cols=154 Identities=15% Similarity=0.115 Sum_probs=110.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH-HHHHHHHHHHC---CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL-VNWKSELHKWL---PS 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL-~QW~~Ef~Kw~---Ps 1075 (2240)
.+.|.|..++..++. +.+.|++.++|+|||+.++..+............+||+||+..+ .|-..++.++. ..
T Consensus 25 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 100 (206)
T d1veca_ 25 KPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHHc----CCCEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhcccC
Confidence 689999999998886 88999999999999999888776655545555678999998754 44445555553 45
Q ss_pred CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHHHHhhcccc-
Q 000099 1076 VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC- 1150 (2240)
Q Consensus 1076 lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lks- 1150 (2240)
+.+....|........ .......+|+|+|++.+.... ..+...+..+|||||||+|.+. ...+...+..+..
T Consensus 101 ~~~~~~~g~~~~~~~~---~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~ 177 (206)
T d1veca_ 101 AKVMATTGGTNLRDDI---MRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp CCEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred cccccccCCccHHHHH---HHHHhccCeEEeCCccccccccchhccccccceEEEeccccccccchHHHHHHHHHhCCCC
Confidence 6666666655443222 233567899999999987653 2333446789999999999764 3345555566644
Q ss_pred ceEEEeecCC
Q 000099 1151 QRRLLLTGTP 1160 (2240)
Q Consensus 1151 ~~RLLLTGTP 1160 (2240)
...+++|||=
T Consensus 178 ~Q~~l~SAT~ 187 (206)
T d1veca_ 178 RQILLYSATF 187 (206)
T ss_dssp CEEEEEESCC
T ss_pred CEEEEEEecC
Confidence 4578889993
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.17 E-value=1.3e-10 Score=127.92 Aligned_cols=153 Identities=22% Similarity=0.240 Sum_probs=107.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~P--sl 1076 (2240)
.+.|.|..++..++. .+.+.|+...+|+|||+.++..+..... ......+||+||+. ++.++...+.++.. +.
T Consensus 26 ~pt~iQ~~~ip~~l~---g~~d~iv~a~TGsGKT~~~~l~~~~~~~-~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~ 101 (208)
T d1hv8a1 26 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKNL 101 (208)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCC
T ss_pred CCCHHHHHHHHHHHc---CCCCeeeechhcccccceeecccccccc-cccCcceEEEeeccccchhhhhhhhhhcccCCe
Confidence 688999999988775 2246788899999999988777765543 23334689999977 66778888877753 56
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHHHHhhcccc-c
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC-Q 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lks-~ 1151 (2240)
++..+.|......... .....+|+|+|++.+.+.. ..+.-.+..+|||||||++.+. ...+.+.+..++. .
T Consensus 102 ~v~~~~g~~~~~~~~~----~l~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~ 177 (208)
T d1hv8a1 102 KIAKIYGGKAIYPQIK----ALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 177 (208)
T ss_dssp CEEEECTTSCHHHHHH----HHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred EEEEeeCCCChHHHHH----hcCCCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhcCCChHHHHHHHHhCCCCC
Confidence 7778888765543321 1235799999999886542 2333446789999999998543 3345555666644 4
Q ss_pred eEEEeecCC
Q 000099 1152 RRLLLTGTP 1160 (2240)
Q Consensus 1152 ~RLLLTGTP 1160 (2240)
..+++|||-
T Consensus 178 Q~i~~SAT~ 186 (208)
T d1hv8a1 178 RILLFSATM 186 (208)
T ss_dssp EEEEECSSC
T ss_pred eEEEEEccC
Confidence 578889994
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.14 E-value=1.8e-11 Score=127.82 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=80.2
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEEc
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVIIY 1422 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIif 1422 (2240)
.+.++||||+.+..++.|.+.|...|+.+..+||+++.+ .|+.+.. -+|++|+++++||| .+++.||+|
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~-------~~~~~~~---~vlvaTd~~~~GiD-~~v~~Vi~~ 102 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS-------VIPTNGD---VVVVATDALMTGFT-GDFDSVIDC 102 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSC-------CCTTSSC---EEEEESSSSCSSSC-CCBSEEEEC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhh-------hhhhhhc---ceeehhHHHHhccc-cccceEEEE
Confidence 467999999999999999999999999999999999854 4554333 48999999999999 889999885
Q ss_pred C----CCCChhhHHHHhhhhhccCCcc
Q 000099 1423 D----PDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1423 D----~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
| +|+++..|+||+||++| |.+.
T Consensus 103 ~~~~~~P~~~~~y~qr~GR~gR-g~~G 128 (138)
T d1jr6a_ 103 NTSDGKPQDAVSRTQRRGRTGR-GKPG 128 (138)
T ss_dssp SEETTEECCHHHHHHHHTTBCS-SSCE
T ss_pred EecCCCCCCHHHHHhHhccccC-CCCc
Confidence 5 68999999999999999 8776
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=2.2e-10 Score=128.89 Aligned_cols=156 Identities=20% Similarity=0.277 Sum_probs=115.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC-
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKL--NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS- 1075 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps- 1075 (2240)
.|.+-|..++.-+..-..... +-+|+.+||+|||.+++..+...+. ....++|+||+. |..|+.+.|.++++.
T Consensus 55 ~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~---~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~ 131 (233)
T d2eyqa3 55 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDRFANW 131 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHSTTT
T ss_pred ccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHH---cCCceEEEccHHHhHHHHHHHHHHHHhhC
Confidence 677889999998887666444 5699999999999999888876664 345789999976 568899999999886
Q ss_pred -CeEEEEecchh--hHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhc-cccc
Q 000099 1076 -VSCIYYVGAKD--QRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDR-YRCQ 1151 (2240)
Q Consensus 1076 -lkVvvy~Gskd--eRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~-Lks~ 1151 (2240)
+.+.++++... .+..++. .+..+..+|||.|...+... +...++.+|||||-|++. .+.-..+.. ....
T Consensus 132 ~~~v~~l~~~~~~~~~~~~~~-~~~~g~~~iviGths~l~~~---~~f~~LgLiIiDEeH~fg---~kQ~~~l~~~~~~~ 204 (233)
T d2eyqa3 132 PVRIEMISRFRSAKEQTQILA-EVAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFG---VRHKERIKAMRANV 204 (233)
T ss_dssp TCCEEEESTTSCHHHHHHHHH-HHHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSC---HHHHHHHHHHHTTS
T ss_pred CCEEEeccCcccchhHHHHHH-HHhCCCCCEEEeehhhhccC---Cccccccceeeechhhhh---hHHHHHHHhhCCCC
Confidence 46677777543 4444433 56678899999999888643 333468899999999973 222223332 2345
Q ss_pred eEEEeecCCCCCCH
Q 000099 1152 RRLLLTGTPLQNDL 1165 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL 1165 (2240)
+.|++||||+..++
T Consensus 205 ~~l~~SATPiprtl 218 (233)
T d2eyqa3 205 DILTLTATPIPRTL 218 (233)
T ss_dssp EEEEEESSCCCHHH
T ss_pred CEEEEecchhHHHH
Confidence 79999999987653
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.11 E-value=4.8e-10 Score=126.03 Aligned_cols=162 Identities=22% Similarity=0.292 Sum_probs=114.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHh---------CCCCCeEEEechH-HHHHHHHH
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFK---------GNYGPHLIIVPNA-VLVNWKSE 1068 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~k---------g~~GP~LIVVP~S-LL~QW~~E 1068 (2240)
..+.|.|..++..++. +.+.|+..++|+|||+..+..+...+... .....+|||||+. ++.|+..+
T Consensus 42 ~~pt~iQ~~~ip~il~----g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~ 117 (238)
T d1wrba1 42 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 117 (238)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHhhhhhC----CCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchhee
Confidence 4799999999998886 88999999999999999888776544211 1223589999987 66778888
Q ss_pred HHHHCCC--CeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHH
Q 000099 1069 LHKWLPS--VSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLA 1142 (2240)
Q Consensus 1069 f~Kw~Ps--lkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKls 1142 (2240)
+..+... +++..+.|........ .......+|||+|++.+.... ..+.-..+.++||||||++... ...+.
T Consensus 118 ~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~i~ 194 (238)
T d1wrba1 118 SQKFSLNTPLRSCVVYGGADTHSQI---REVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIR 194 (238)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHH---HHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHH
T ss_pred eeecccCCCcEEEEEeccchhhHHH---hhcccCCceeecCHHHHHhHHccCceeccccceeeeehhhhhhhhccHHHHH
Confidence 8887543 6677776655433222 233457899999999997653 2334457889999999998543 34455
Q ss_pred HHhhccc-----cceEEEeecCCCCCCHHHH
Q 000099 1143 RDLDRYR-----CQRRLLLTGTPLQNDLKEL 1168 (2240)
Q Consensus 1143 kaLk~Lk-----s~~RLLLTGTPLQNnL~EL 1168 (2240)
..+..++ ....+++||| +..++.+|
T Consensus 195 ~Il~~~~~~~~~~~Q~il~SAT-~~~~v~~l 224 (238)
T d1wrba1 195 KIIEESNMPSGINRQTLMFSAT-FPKEIQKL 224 (238)
T ss_dssp HHHHSSCCCCGGGCEEEEEESS-CCHHHHHH
T ss_pred HHHHHhcCCCCCCCEEEEEeee-CCHHHHHH
Confidence 5565442 2357899999 44444443
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.09 E-value=3.3e-12 Score=144.03 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=84.7
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec--
Q 000099 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI-- 1404 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST-- 1404 (2240)
.-|+..|..+|.+ -|.++||||+++.+++.|.++|... +||+++..+|.+++++|..++.+ +||+|
T Consensus 11 ~~~~~~l~~~l~~---~~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~---vLVaT~a 78 (248)
T d1gkub2 11 DESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEID---HLIGTAH 78 (248)
T ss_dssp CCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCS---EEEEECC
T ss_pred chHHHHHHHHHHH---hCCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHhCCCe---EEEEecc
Confidence 3466677777764 3678999999999999999999853 89999999999999999987666 67777
Q ss_pred --ccccccCCCCC-CCeEEEcCCCCChhhHHHHhhhhhccCCcce
Q 000099 1405 --RAAGRGLNLQS-ADTVIIYDPDPNPKNEEQAVARAHRIGQKRE 1446 (2240)
Q Consensus 1405 --rAGGeGLNLQa-ADtVIifD~pWNP~~d~QAiGRAhRIGQKKe 1446 (2240)
+++++|||++. +++||+||+||++ |++||++|.|+...
T Consensus 79 ~~~v~~rGlDip~~v~~VI~~d~P~~~----~r~gR~~R~g~~~~ 119 (248)
T d1gkub2 79 YYGTLVRGLDLPERIRFAVFVGCPSFR----VTIEDIDSLSPQMV 119 (248)
T ss_dssp ------CCSCCTTTCCEEEEESCCEEE----EECSCGGGSCHHHH
T ss_pred ccchhhhccCccccccEEEEeCCCcch----hhhhhhhccCcceE
Confidence 77899999995 9999999999844 78999999997643
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=3.5e-10 Score=125.69 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=108.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCC--C
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPS--V 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~Ps--l 1076 (2240)
.+.|.|..++..++. +.+.|++.++|+|||+.++..+...+........+||+||+. ++.|-..++.++... +
T Consensus 34 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~ 109 (218)
T d2g9na1 34 KPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 109 (218)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccchhhhhHHHHHhhhccccce
Confidence 689999999999887 788999999999999999887776654444555689999987 556667777777543 4
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCc--hhHHHHHhhcccc-c
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC-Q 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lks-~ 1151 (2240)
.+....+........ ........+|+|+|++.+.... ..+......+|||||||++.+. ...+...+..++. .
T Consensus 110 ~~~~~~~~~~~~~~~--~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~ 187 (218)
T d2g9na1 110 SCHACIGGTNVRAEV--QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 187 (218)
T ss_dssp CEEEECC--CCCSTT--TSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eEEeeecccchhHHH--HHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeecchhhcCchHHHHHHHHHhCCCCC
Confidence 444444433222111 0122346799999999887653 2334446789999999999653 3445555666654 4
Q ss_pred eEEEeecCC
Q 000099 1152 RRLLLTGTP 1160 (2240)
Q Consensus 1152 ~RLLLTGTP 1160 (2240)
..+++|||=
T Consensus 188 Q~il~SAT~ 196 (218)
T d2g9na1 188 QVVLLSATM 196 (218)
T ss_dssp EEEEEESCC
T ss_pred eEEEEEecC
Confidence 578889994
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.02 E-value=1.7e-09 Score=118.48 Aligned_cols=153 Identities=20% Similarity=0.198 Sum_probs=107.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH-HHHHHHHHH--CCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV-NWKSELHKW--LPSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~-QW~~Ef~Kw--~Psl 1076 (2240)
.+.|.|..++..++. +.+.|+..++|+|||+..+..+...+.........++++|...+. +-...+..+ ..++
T Consensus 23 ~pt~iQ~~aip~il~----g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (206)
T d1s2ma1 23 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 98 (206)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHHc----CCCEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhhhhhhhhcccccCe
Confidence 689999999998887 788999999999999888776665554445556778888876443 322223322 3567
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhh--hccccCcceEecccccccCCc--hhHHHHHhhcccc-c
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRS--KLSKVDWKYIIIDEAQRMKDR--ESVLARDLDRYRC-Q 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s--~L~kikWd~VIIDEAHrLKN~--~SKlskaLk~Lks-~ 1151 (2240)
++....|........ .......+|+|+|++.+.+... .+.-.+..++||||||+|.+. ...+...+..++. .
T Consensus 99 ~~~~~~g~~~~~~~~---~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~ 175 (206)
T d1s2ma1 99 SCMVTTGGTNLRDDI---LRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH 175 (206)
T ss_dssp CEEEECSSSCHHHHH---HHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSC
T ss_pred eEEeecCccchhhHH---HHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhhhhHHHHHHHHHhCCCCC
Confidence 888888765543322 2335678999999999976543 233346789999999999874 3445555556654 4
Q ss_pred eEEEeecC
Q 000099 1152 RRLLLTGT 1159 (2240)
Q Consensus 1152 ~RLLLTGT 1159 (2240)
..+++|||
T Consensus 176 Q~il~SAT 183 (206)
T d1s2ma1 176 QSLLFSAT 183 (206)
T ss_dssp EEEEEESC
T ss_pred EEEEEEEe
Confidence 57888999
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.98 E-value=9.8e-10 Score=119.77 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=106.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHH----HHHHHHHHHHCC-
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVL----VNWKSELHKWLP- 1074 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL----~QW~~Ef~Kw~P- 1074 (2240)
.+.|.|..++..++. +.+.|+..+||+|||+.++..+.............++++|...+ .+|.....++..
T Consensus 23 ~pt~iQ~~aip~~l~----G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (209)
T d1q0ua_ 23 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 98 (209)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHHC----CCCeEeecccccccceeeeeeeccccccccccccccccccccchhHHHHHHHHhhhccccc
Confidence 689999999999887 88999999999999998877766555444445567888876543 335555555443
Q ss_pred --CCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCCch--hHHHHHhhcc
Q 000099 1075 --SVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKDRE--SVLARDLDRY 1148 (2240)
Q Consensus 1075 --slkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN~~--SKlskaLk~L 1148 (2240)
...+....+..+..... .......+|+|+|++.+.... ......+..++||||||++.+.. ..+...+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ll~~~f~~~v~~I~~~~ 175 (209)
T d1q0ua_ 99 DRMIVARCLIGGTDKQKAL---EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 175 (209)
T ss_dssp GGCCCEEEECCCSHHHHTT---CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred cccccccccccchhhHHHH---HHhccCceEEEecCchhhhhhhhhccccccceEEEEeecccccccccHHHHHHHHHHC
Confidence 23444444444332211 123456899999999987643 22333467899999999997543 3455555566
Q ss_pred cc-ceEEEeecCCCCCCHHHH
Q 000099 1149 RC-QRRLLLTGTPLQNDLKEL 1168 (2240)
Q Consensus 1149 ks-~~RLLLTGTPLQNnL~EL 1168 (2240)
+. ...+++||| +.+.+.++
T Consensus 176 ~~~~Q~il~SAT-l~~~v~~l 195 (209)
T d1q0ua_ 176 PKDLQMLVFSAT-IPEKLKPF 195 (209)
T ss_dssp CTTCEEEEEESC-CCGGGHHH
T ss_pred CCCCEEEEEEcc-CCHHHHHH
Confidence 43 457889999 34444444
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.97 E-value=6.6e-10 Score=122.17 Aligned_cols=115 Identities=14% Similarity=0.140 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh--------------------------------cCceEEeecCCCCHH
Q 000099 1334 DRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW--------------------------------RQLVYRRIDGTTSLE 1381 (2240)
Q Consensus 1334 drIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~--------------------------------rGiky~rLDGsTs~e 1381 (2240)
..++.++...++.+||||..+..++.++..|.. +| +..+||+++.+
T Consensus 30 ~~l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~G--Ia~hh~~l~~~ 107 (201)
T d2p6ra4 30 EELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG--AAFHHAGLLNG 107 (201)
T ss_dssp HHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT--CCEECTTSCHH
T ss_pred HHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhcc--HHHHHHHhhhh
Confidence 345566667789999999998776665555442 23 34579999999
Q ss_pred HHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE-------cCCCCChhhHHHHhhhhhccCCcceEEEEEEe
Q 000099 1382 DRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII-------YDPDPNPKNEEQAVARAHRIGQKREVKVIYME 1453 (2240)
Q Consensus 1382 EReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi-------fD~pWNP~~d~QAiGRAhRIGQKKeV~VyrLv 1453 (2240)
+|..+.+.|+.+... +|++|++++.|||++..++||. ++.++++..|.|+.|||+|.|....-.+|.+.
T Consensus 108 ~r~~ie~~f~~g~i~---vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~ 183 (201)
T d2p6ra4 108 QRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 183 (201)
T ss_dssp HHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred hHHHHHHHHhCCCce---EEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEe
Confidence 999999999976555 7999999999999997777775 56678999999999999999986555555553
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=2.5e-09 Score=118.16 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=106.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH-HHHHHHHHHHHCC--CC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV-LVNWKSELHKWLP--SV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL-L~QW~~Ef~Kw~P--sl 1076 (2240)
.+.|.|..++..++. +.+.|+...+|+|||+.++..+...+........+||+||+.. +.+-...+..+.. .+
T Consensus 32 ~pt~iQ~~aip~il~----g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 107 (212)
T d1qdea_ 32 EPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 107 (212)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCHHHHHHHHHHHc----CCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHHHhhhhhhhhccccccccc
Confidence 799999999998886 8889999999999999988776665544455557899999874 4554555555443 34
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhh--hhccccCcceEecccccccCC--chhHHHHHhhcccc-c
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDR--SKLSKVDWKYIIIDEAQRMKD--RESVLARDLDRYRC-Q 1151 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~--s~L~kikWd~VIIDEAHrLKN--~~SKlskaLk~Lks-~ 1151 (2240)
.+....+......+. ....+.+|+|+|++.+.... ..+.-.+..++||||||++.+ ....+...+..+.. .
T Consensus 108 ~~~~~~~~~~~~~~~----~~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~~ 183 (212)
T d1qdea_ 108 KVHACIGGTSFVEDA----EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 183 (212)
T ss_dssp CEEEECC--------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred ceeeEeeccchhHHH----HHhcCCcEEEECCCccccccccCceecCcceEEeehhhhhhcccchHHHHHHHHHhCCCCC
Confidence 445555443332221 22346799999999987653 233344688999999999965 34455556666644 4
Q ss_pred eEEEeecCCCCCCHHH
Q 000099 1152 RRLLLTGTPLQNDLKE 1167 (2240)
Q Consensus 1152 ~RLLLTGTPLQNnL~E 1167 (2240)
..+++|||= .+.+.+
T Consensus 184 Q~vl~SAT~-~~~v~~ 198 (212)
T d1qdea_ 184 QVVLLSATM-PNDVLE 198 (212)
T ss_dssp EEEEEESSC-CHHHHH
T ss_pred eEEEEEeeC-CHHHHH
Confidence 578899993 333343
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=3.4e-10 Score=125.32 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=92.0
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEecchhHHHH--------HHHHHHh---cCceEEeecCCCCHHHHHHHHHHHhcCCCC
Q 000099 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDI--------LEEYLQW---RQLVYRRIDGTTSLEDRESAIVDFNSHDSD 1396 (2240)
Q Consensus 1328 GKLelLdrIL~kL~atGhKVLIFSQ~t~~LDi--------Led~L~~---rGiky~rLDGsTs~eEReeaIk~FNs~Ds~ 1396 (2240)
.|...+...+.+-...|+.|.+.|......+. ..+.|.. .++++..+||.|+.++|++++.+|.+++.+
T Consensus 13 ~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~ 92 (206)
T d1gm5a4 13 DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 92 (206)
T ss_dssp STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEE
Confidence 35555555666666788888888876543332 2222322 266788899999999999999999987777
Q ss_pred ccEEEEecccccccCCCCCCCeEEEcCCC-CChhhHHHHhhhhhccCCcceEEEE
Q 000099 1397 CFIFLLSIRAAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1397 ~fVfLLSTrAGGeGLNLQaADtVIifD~p-WNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+||||.+.++|||+++|++||++|.+ |....+.|..||++|-|.+..|..+
T Consensus 93 ---iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~ 144 (206)
T d1gm5a4 93 ---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 144 (206)
T ss_dssp ---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred ---EEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEee
Confidence 79999999999999999999999999 6899999999999999988777544
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.81 E-value=7.2e-10 Score=127.57 Aligned_cols=99 Identities=17% Similarity=0.102 Sum_probs=83.9
Q ss_pred cCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHH----------HHHHHHHhcCCCCccEEEEecccccc---
Q 000099 1343 TGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDR----------ESAIVDFNSHDSDCFIFLLSIRAAGR--- 1409 (2240)
Q Consensus 1343 tGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eER----------eeaIk~FNs~Ds~~fVfLLSTrAGGe--- 1409 (2240)
.+.|+||||+.+..++.|...|...|+....+||+++.+.| ..++..|..++.+ +|+.|++..+
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~d---vVVaT~~~a~g~~ 111 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFD---SVIDCNTCVTQTV 111 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBS---EEEECCEEEEEEE
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCc---EEEEEeehhccCC
Confidence 47899999999999999999999999999999999998876 4578888865544 5677777666
Q ss_pred cCCCCCCCeEEEcCCCCChhhHHHHhhhhhccCCcc
Q 000099 1410 GLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQKR 1445 (2240)
Q Consensus 1410 GLNLQaADtVIifD~pWNP~~d~QAiGRAhRIGQKK 1445 (2240)
|+|+..+.+||+||.|.|...|+||+||++| |...
T Consensus 112 giDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G 146 (299)
T d1a1va2 112 DFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPG 146 (299)
T ss_dssp ECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE
T ss_pred CCCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCc
Confidence 7888889999999999999999999999999 7554
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=4e-08 Score=108.59 Aligned_cols=120 Identities=17% Similarity=0.160 Sum_probs=101.5
Q ss_pred cHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhc--CceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecc
Q 000099 1328 GKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR--QLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIR 1405 (2240)
Q Consensus 1328 GKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~r--Giky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTr 1405 (2240)
.+..+...|..+ ...|+.|.+.|.....++.+.+.|... ++++..+||.|+.+++++++.+|.+++.+ +|+||.
T Consensus 16 ~~~~i~~~I~~E-l~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~---ILv~Tt 91 (211)
T d2eyqa5 16 DSMVVREAILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTT 91 (211)
T ss_dssp CHHHHHHHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EEEESS
T ss_pred CHHHHHHHHHHH-HHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcc---eEEEeh
Confidence 344444445555 467999999999998888888887764 78899999999999999999999987777 899999
Q ss_pred cccccCCCCCCCeEEEcCCC-CChhhHHHHhhhhhccCCcceEEEEE
Q 000099 1406 AAGRGLNLQSADTVIIYDPD-PNPKNEEQAVARAHRIGQKREVKVIY 1451 (2240)
Q Consensus 1406 AGGeGLNLQaADtVIifD~p-WNP~~d~QAiGRAhRIGQKKeV~Vyr 1451 (2240)
+...|||+++|+++|+++.+ |-..+..|-.||++|-+...-|+.++
T Consensus 92 vIEvGiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~ 138 (211)
T d2eyqa5 92 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 138 (211)
T ss_dssp TTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred hhhhccCCCCCcEEEEecchhccccccccccceeeecCccceEEEEe
Confidence 99999999999999999999 79999999999999988665554443
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.14 E-value=3.4e-06 Score=97.61 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=74.3
Q ss_pred hcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEecccccccCCCCCCCeEEE
Q 000099 1342 RTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRAAGRGLNLQSADTVII 1421 (2240)
Q Consensus 1342 atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrAGGeGLNLQaADtVIi 1421 (2240)
+.+.++||||.....++.|+..|...|++++.|||.+..+++. .|.+++.+ |||+|++++.|||+ .+++||-
T Consensus 34 ~~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~~~~---~~~~t~~~~~~~~~-~~~~vid 105 (299)
T d1yksa2 34 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQKKPD---FILATDIAEMGANL-CVERVLD 105 (299)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CCCS---EEEESSSTTCCTTC-CCSEEEE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcCCcC---EEEEechhhhceec-CceEEEe
Confidence 3577999999999999999999999999999999999987765 35555544 89999999999999 6998873
Q ss_pred ---------cCCC----------CChhhHHHHhhhhhccCCc
Q 000099 1422 ---------YDPD----------PNPKNEEQAVARAHRIGQK 1444 (2240)
Q Consensus 1422 ---------fD~p----------WNP~~d~QAiGRAhRIGQK 1444 (2240)
||+. .+.....||.||++|.+-+
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~ 147 (299)
T d1yksa2 106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147 (299)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred cCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCC
Confidence 4432 4667778999999998644
|
| >d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.8e-07 Score=92.44 Aligned_cols=64 Identities=16% Similarity=0.027 Sum_probs=58.2
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+|++..+|+||.+|++||||.+ |.++|+.|+|.++.++..|+.+ ++|+++ ..+..|
T Consensus 18 ~~s~~F~~pv~~~~~pdY~~~I~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~-----~~A~~l 91 (102)
T d3d7ca1 18 PSAWPFMEPVKKSEAPDYYEVIRFPIDLKT-MTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYC-----RCASAL 91 (102)
T ss_dssp GGGGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCCSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHH
T ss_pred CCCCccCCCCChhhCcCHHHHcCCccCHHH-HHHHhccCccCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 457789 88899999999999999999999 9999999999999999999999 999988 776665
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 92 ~ 92 (102)
T d3d7ca1 92 E 92 (102)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.94 E-value=2.8e-05 Score=83.31 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=97.3
Q ss_pred ccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEeccc
Q 000099 1327 CGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSIRA 1406 (2240)
Q Consensus 1327 SGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLSTrA 1406 (2240)
..|+..+..-+.++...|..|||||.+....+.|..+|...++++..|+.... ++-.+++. . ......+.|+|..
T Consensus 17 ~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~-~~Ea~II~-~---Ag~~g~VtIATNm 91 (175)
T d1tf5a4 17 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH-EREAQIIE-E---AGQKGAVTIATNM 91 (175)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH-HHHHHHHT-T---TTSTTCEEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhH-HHHHHHHH-h---ccCCCceeehhhH
Confidence 46888888888888899999999999999999999999999999999997754 33333443 2 2233358999999
Q ss_pred ccccCCCCC--------CCeEEEcCCCCChhhHHHHhhhhhccCCcceEEEE
Q 000099 1407 AGRGLNLQS--------ADTVIIYDPDPNPKNEEQAVARAHRIGQKREVKVI 1450 (2240)
Q Consensus 1407 GGeGLNLQa--------ADtVIifD~pWNP~~d~QAiGRAhRIGQKKeV~Vy 1450 (2240)
+|+|.|+.- -=+||.-..+-|...+.|..||++|.|......+|
T Consensus 92 AGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~ 143 (175)
T d1tf5a4 92 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 143 (175)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred HHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEE
Confidence 999998653 23889999999999999999999999988776554
|
| >d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: P300/CAF histone acetyltransferase bromodomain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=3e-07 Score=93.17 Aligned_cols=65 Identities=15% Similarity=0.066 Sum_probs=59.1
Q ss_pred ccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000099 1730 RRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (2240)
Q Consensus 1730 r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1798 (2240)
...+.+| .+|+...||+||.+|++||||.+ |.++|+.|+|.++.++..|+.+ ++|+++ +.+..
T Consensus 28 ~~~a~~F~~pv~~~~~pdY~~iI~~PmdL~~-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yn~~~s~~~-----~~A~~ 101 (118)
T d1wuma1 28 HQSAWPFMEPVKRTEAPGYYEVIRFPMDLKT-MSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYY-----KCANI 101 (118)
T ss_dssp SSSCHHHHSCCCSSSSSSCTTTCSSCCCHHH-HHHHHTTTCCCSSHHHHHHHHHHHHHHHHHSCTTSSHH-----HHHHH
T ss_pred CCCcCcccCCCChhhCcCHHHHcCChhhHHH-HHHHhcccccCchHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 3457889 99999999999999999999999 9999999999999999999998 999998 77766
Q ss_pred cc
Q 000099 1799 LQ 1800 (2240)
Q Consensus 1799 ~~ 1800 (2240)
|+
T Consensus 102 l~ 103 (118)
T d1wuma1 102 LE 103 (118)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=5.5e-07 Score=92.43 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=65.2
Q ss_pred ccchhhhhhcCCCCCCCCccccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC--------
Q 000099 1712 RNNHVVEEAGSSGSSSNSRRLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ-------- 1782 (2240)
Q Consensus 1712 ~~~~~~~~~~~~~~~~~~r~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~-------- 1782 (2240)
.+++++... -...+.+.+| .+|++..||+||.+|++||||.+ |..+|+.|+|.++.++..|+.+
T Consensus 13 il~~l~~~~------~~~~p~a~pF~~pVd~~~~PdY~~vIk~PmDL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 85 (128)
T d1eqfa2 13 ILDNIVTQK------MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLET-IRKNISKHKYQSRESFLDDVNLILANSVKY 85 (128)
T ss_dssp HHHHHHHHT------TTTSTTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------HHcCCCCChhcCCCCcccCcCHHHHcCCcccHHH-HHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 455555443 3556668899 89999999999999999999999 9999999999999999999999
Q ss_pred --CCCccccCCccccccccc
Q 000099 1783 --SGSWTHDRDEGEDEQVLQ 1800 (2240)
Q Consensus 1783 --~~Sw~~~~~~~~d~~~~~ 1800 (2240)
++|.++ +.+..|.
T Consensus 86 N~~~s~i~-----~~A~~L~ 100 (128)
T d1eqfa2 86 NGPESQYT-----KTAQEIV 100 (128)
T ss_dssp HCTTCHHH-----HHHHHHH
T ss_pred CCCCCHHH-----HHHHHHH
Confidence 888888 7666555
|
| >d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: GCN5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.88 E-value=4.8e-07 Score=90.66 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=58.8
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+|+...+|+||.+|++||||++ |..+|+.|+|.++.++..|+.+ ++|+++ +.+..|
T Consensus 19 ~~a~pF~~pvd~~~~pdY~~vI~~PmdL~t-I~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~~s~i~-----~~A~~l 92 (111)
T d1e6ia_ 19 AAAWPFLQPVNKEEVPDYYDFIKEPMDLST-MEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYY-----KYANRL 92 (111)
T ss_dssp TTCGGGSSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHHH
T ss_pred CCChhhcCCCCchhCcCHHHHcCCchhHHH-HHHHHHccccchHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 347889 88999999999999999999999 9999999999999999999999 899998 777766
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 93 ~ 93 (111)
T d1e6ia_ 93 E 93 (111)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: TAFII250 double bromodomain module species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=1.8e-06 Score=89.63 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=57.4
Q ss_pred cccccc-CCCCcccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCcccccccc
Q 000099 1731 RLTQIV-SPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQVL 1799 (2240)
Q Consensus 1731 ~l~~~f-~lps~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~~ 1799 (2240)
..+.+| .+|+...+||||.+|++||||.. |.++|+.|+|.++.++..|+.+ ++|.++ +.+..|
T Consensus 42 ~~s~pF~~Pvd~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~i~-----~~A~~L 115 (139)
T d1eqfa1 42 PNTYPFHTPVNAKVVKDYYKIITRPMDLQT-LRENVRKRLYPSREEFREHLELIVKNSATYNGPKHSLT-----QISQSM 115 (139)
T ss_dssp TTCGGGTSCCCTTTSTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTCTTSHHH-----HHHHHH
T ss_pred CCchhhhCCCChhhccCHHHHcCChhhHHH-HHHHHHcCCcCCHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHHH
Confidence 346889 88999999999999999999999 9999999999999999999999 888888 666555
Q ss_pred c
Q 000099 1800 Q 1800 (2240)
Q Consensus 1800 ~ 1800 (2240)
+
T Consensus 116 ~ 116 (139)
T d1eqfa1 116 L 116 (139)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Bromodomain-like superfamily: Bromodomain family: Bromodomain domain: CREB-binding protein, CBP species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=3.9e-06 Score=84.30 Aligned_cols=63 Identities=16% Similarity=0.039 Sum_probs=54.0
Q ss_pred ccccc-CCCC--cccccchhhhhcCCCCcccccchhhccCccccccccccccCC----------CCCccccCCccccccc
Q 000099 1732 LTQIV-SPVS--PQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQ----------SGSWTHDRDEGEDEQV 1798 (2240)
Q Consensus 1732 l~~~f-~lps--~~~~~~yya~i~~P~dl~~~i~~~leeg~ya~~~d~~~D~~~----------~~Sw~~~~~~~~d~~~ 1798 (2240)
.+.+| ..++ ...+||||.+|++||||.. |..+|+.|+|.++.+...|+.+ ++|+++ ..+..
T Consensus 24 ~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~t-I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~~~-----~~A~~ 97 (114)
T d3dwya1 24 ESLPFRQPVDPQLLGIPDYFDIVKNPMDLST-IKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVY-----KFCSK 97 (114)
T ss_dssp TTGGGSSCCCHHHHTCTTHHHHCSSCCCHHH-HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCTTSHHH-----HHHHH
T ss_pred CCCccCCCCChhhccCCCHHHHcCCCCCHHH-HHHHHHcCccccHHHHHHHHHHHHHHHHHHCCCCCHHH-----HHHHH
Confidence 45678 5554 4479999999999999999 9999999999999999999999 889988 66655
Q ss_pred cc
Q 000099 1799 LQ 1800 (2240)
Q Consensus 1799 ~~ 1800 (2240)
|+
T Consensus 98 L~ 99 (114)
T d3dwya1 98 LA 99 (114)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=96.89 E-value=0.0048 Score=69.60 Aligned_cols=157 Identities=18% Similarity=0.262 Sum_probs=96.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHH----HHHHHHHHHC
Q 000099 998 AGTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLV----NWKSELHKWL 1073 (2240)
Q Consensus 998 ggtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~----QW~~Ef~Kw~ 1073 (2240)
|-..++-|+.|.--|.. |.|.-..||=|||+++ ++.+++....+ +.+-||+.+..|. .|...+.+|+
T Consensus 78 G~RhyDVQLiGgi~L~~------G~iaem~TGEGKTL~a-~l~a~l~al~g--~~vhvvTvNdyLA~RDae~m~~iy~~l 148 (273)
T d1tf5a3 78 GMFPFKVQLMGGVALHD------GNIAEMKTGEGKTLTS-TLPVYLNALTG--KGVHVVTVNEYLASRDAEQMGKIFEFL 148 (273)
T ss_dssp SCCCCHHHHHHHHHHHT------TSEEECCTTSCHHHHH-HHHHHHHHTTS--SCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred ceEEehhHHHHHHHHHh------hhheeecCCCcchhHH-HHHHHHHHhcC--CCceEEecCccccchhhhHHhHHHHHc
Confidence 33566678888765543 4588899999999887 44555554333 3566777777664 4999999998
Q ss_pred CCCeEEEEecc--hhhHhHHHHHHHhhcCCcEEEEcHHHHHHh---------hhhccccCcceEecccccccCCc-----
Q 000099 1074 PSVSCIYYVGA--KDQRSRLFSQEVAALKFNVLVTTYEFIMYD---------RSKLSKVDWKYIIIDEAQRMKDR----- 1137 (2240)
Q Consensus 1074 PslkVvvy~Gs--kdeRk~l~~qei~~~~fdVVITTYE~L~kD---------~s~L~kikWd~VIIDEAHrLKN~----- 1137 (2240)
++.|-+.... ..+|+. ....+|+-+|-.-|--| ...+....+.+.||||++-+.=.
T Consensus 149 -Glsvg~~~~~~~~~~r~~-------~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsiliDeartp 220 (273)
T d1tf5a3 149 -GLTVGLNLNSMSKDEKRE-------AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 220 (273)
T ss_dssp -TCCEEECCTTSCHHHHHH-------HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred -CCCccccccccCHHHHHH-------HhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhhhhccCCc
Confidence 4555444332 233322 23568888886555332 22334457899999999976310
Q ss_pred ----------hhHHHHHhhccccceEEEeecCCCCCCHHHHHHHHh
Q 000099 1138 ----------ESVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLN 1173 (2240)
Q Consensus 1138 ----------~SKlskaLk~Lks~~RLLLTGTPLQNnL~ELwSLLn 1173 (2240)
.+..++.+.++. ++.-+||||- .....|+|.+.+
T Consensus 221 liisg~~~~~a~it~q~~f~~y-~~l~gmtgta-~~~~~e~~~iy~ 264 (273)
T d1tf5a3 221 LIISGQSMTLATITFQNYFRMY-EKLAGMTGTA-KTEEEEFRNIYN 264 (273)
T ss_dssp EEEEEEEEEEEEEEHHHHHTTS-SEEEEEESCC-GGGHHHHHHHHC
T ss_pred eEeccCccchhhhhHHHHHHHH-HHHhCCcccc-HHHHHHHHhccC
Confidence 111122222222 4677899995 455777777665
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.39 E-value=0.016 Score=63.19 Aligned_cols=129 Identities=16% Similarity=0.128 Sum_probs=103.4
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEEEEec
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIFLLSI 1404 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVfLLST 1404 (2240)
....|+..+..-+..+...|.-|||.+.....-+.|..+|...|+++..|+..-. +.-..+|.+= + ..-.+-|+|
T Consensus 15 T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~h-erEAeIIAqA--G--~~GaVTIAT 89 (219)
T d1nkta4 15 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH-EQEATIIAVA--G--RRGGVTVAT 89 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH-HHHHHHHHTT--T--STTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhH-HHHHHHHHhc--c--cCCcEEeec
Confidence 3457889999999999999999999999999999999999999999999999743 3333455432 2 233478999
Q ss_pred ccccccCCCCC----------------------------------------------------CCeEEEcCCCCChhhHH
Q 000099 1405 RAAGRGLNLQS----------------------------------------------------ADTVIIYDPDPNPKNEE 1432 (2240)
Q Consensus 1405 rAGGeGLNLQa----------------------------------------------------ADtVIifD~pWNP~~d~ 1432 (2240)
.-+|+|.|+.= -=+||.-...-+...+.
T Consensus 90 NMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDn 169 (219)
T d1nkta4 90 NMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDN 169 (219)
T ss_dssp TTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHH
T ss_pred cccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeccccccccccc
Confidence 99999999732 23789999999999999
Q ss_pred HHhhhhhccCCcceEEEEEEehhHHHhh
Q 000099 1433 QAVARAHRIGQKREVKVIYMEAVVDKIS 1460 (2240)
Q Consensus 1433 QAiGRAhRIGQKKeV~VyrLvTVEEkI~ 1460 (2240)
|-.||++|.|.....++|. ++++.++
T Consensus 170 QLRGRsGRQGDPGsSrFfl--SLeDdLm 195 (219)
T d1nkta4 170 QLRGRSGRQGDPGESRFYL--SLGDELM 195 (219)
T ss_dssp HHHHTSSGGGCCEEEEEEE--ETTSHHH
T ss_pred cccccccccCCCccceeEE--eccHHHH
Confidence 9999999999887766553 4454443
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0041 Score=73.05 Aligned_cols=148 Identities=17% Similarity=0.165 Sum_probs=81.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHHH-HHHHHHH---C
Q 000099 999 GTLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVNW-KSELHKW---L 1073 (2240)
Q Consensus 999 gtLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~QW-~~Ef~Kw---~ 1073 (2240)
..+-+.|+.++.-++. +.-.||....|+|||.++..++..+..... ...++++++|+.....- ...+.+. .
T Consensus 147 ~~~~~~Q~~A~~~al~----~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~ 222 (359)
T d1w36d1 147 SDEINWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 222 (359)
T ss_dssp TTSCCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred cccccHHHHHHHHHHc----CCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhhc
Confidence 3466789999987774 445789999999999998888877765433 33478999998754332 2222211 1
Q ss_pred CCCeEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCCchhHHHHHhhccccceE
Q 000099 1074 PSVSCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRESVLARDLDRYRCQRR 1153 (2240)
Q Consensus 1074 PslkVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN~~SKlskaLk~Lks~~R 1153 (2240)
+............. ......--.......+..+ ......+++|||||+-.+- ...+...+..+....+
T Consensus 223 ~~~~~~~~~~~~~~--------~t~~~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEaSmv~--~~l~~~ll~~~~~~~~ 290 (359)
T d1w36d1 223 PLTDEQKKRIPEDA--------STLHRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMID--LPMMSRLIDALPDHAR 290 (359)
T ss_dssp SCCSCCCCSCSCCC--------BTTTSCC-----------C--TTSCCSCSEEEECSGGGCB--HHHHHHHHHTCCTTCE
T ss_pred Cchhhhhhhhhhhh--------hHHHHHHhhhhcchHHHHh--hhcccccceeeehhhhccC--HHHHHHHHHHhcCCCE
Confidence 10000000000000 0000000000111112211 1233478999999998873 2334556666777789
Q ss_pred EEeecCCCC
Q 000099 1154 LLLTGTPLQ 1162 (2240)
Q Consensus 1154 LLLTGTPLQ 1162 (2240)
|+|.|=|-|
T Consensus 291 lILvGD~~Q 299 (359)
T d1w36d1 291 VIFLGDRDQ 299 (359)
T ss_dssp EEEEECTTS
T ss_pred EEEECChhh
Confidence 999999865
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.016 Score=62.54 Aligned_cols=147 Identities=12% Similarity=0.077 Sum_probs=79.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCC--C-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCC
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKL--N-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSV 1076 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~l--n-GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~Psl 1076 (2240)
.++|+|....+.+...+.++. + -||+.+.|+|||..+..++.++....+......-.|+.. .++.... ..
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~------~~i~~~~-~~ 74 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGC------QLMQAGT-HP 74 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHH------HHHHHTC-CT
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchh------hhhhhcc-cc
Confidence 478999999998888776543 2 488999999999999988887764322222212222221 2222222 22
Q ss_pred eEEEEecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhh-ccccCcceEecccccccCC-chhHHHHHhhccccceEE
Q 000099 1077 SCIYYVGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSK-LSKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRL 1154 (2240)
Q Consensus 1077 kVvvy~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~-L~kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RL 1154 (2240)
.+..+....... .+....+ ..+...... -..-.+.+|||||+|.|-. ....+.+.+.......++
T Consensus 75 ~~~~~~~~~~~~-~i~~~~i------------r~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~f 141 (207)
T d1a5ta2 75 DYYTLAPEKGKN-TLGVDAV------------REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWF 141 (207)
T ss_dssp TEEEECCCTTCS-SBCHHHH------------HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEE
T ss_pred ccchhhhhhccc-ccccchh------------hHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhccccee
Confidence 222222111100 0000000 011111111 1123688999999999953 234556666666667788
Q ss_pred EeecCCCCCCHH
Q 000099 1155 LLTGTPLQNDLK 1166 (2240)
Q Consensus 1155 LLTGTPLQNnL~ 1166 (2240)
+|+.+-...-+.
T Consensus 142 Il~t~~~~~ll~ 153 (207)
T d1a5ta2 142 FLATREPERLLA 153 (207)
T ss_dssp EEEESCGGGSCH
T ss_pred eeeecChhhhhh
Confidence 887775444333
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.11 Score=56.40 Aligned_cols=137 Identities=18% Similarity=0.062 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhcCC--CC-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHHHHHHCCCCeEEEE
Q 000099 1005 QIVGLQWMLSLYNNK--LN-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHKWLPSVSCIYY 1081 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~--ln-GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~Ef~Kw~PslkVvvy 1081 (2240)
|.+.+++|..++.++ .+ -||..+.|+|||..+.+++..+............++ .++. ++..- ..+.++.+
T Consensus 17 ~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~-----~~~~-~i~~~-~~~~~~~~ 89 (239)
T d1njfa_ 17 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC-----DNCR-EIEQG-RFVDLIEI 89 (239)
T ss_dssp CHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCS-----HHHH-HHHHT-CCTTEEEE
T ss_pred hHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccc-----hHHH-HHHcC-CCCeEEEe
Confidence 455666666655433 23 478999999999998877766654322222211122 2221 22221 11223322
Q ss_pred ecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhc----cccCcceEecccccccC-CchhHHHHHhhccccceEEEe
Q 000099 1082 VGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKL----SKVDWKYIIIDEAQRMK-DRESVLARDLDRYRCQRRLLL 1156 (2240)
Q Consensus 1082 ~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L----~kikWd~VIIDEAHrLK-N~~SKlskaLk~Lks~~RLLL 1156 (2240)
...... ..+.+..-...+ ....+.+|||||+|.|. +....+.+.+..+....+++|
T Consensus 90 ~~~~~~-------------------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il 150 (239)
T d1njfa_ 90 DAASRT-------------------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 150 (239)
T ss_dssp ETTCSS-------------------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEE
T ss_pred cchhcC-------------------CHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 221110 011111111111 12357799999999983 233346666666666778888
Q ss_pred ecCCCCCCHHH
Q 000099 1157 TGTPLQNDLKE 1167 (2240)
Q Consensus 1157 TGTPLQNnL~E 1167 (2240)
+.+-...-+.-
T Consensus 151 ~tn~~~~i~~~ 161 (239)
T d1njfa_ 151 ATTDPQKLPVT 161 (239)
T ss_dssp EESCGGGSCHH
T ss_pred EcCCccccChh
Confidence 77654443333
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.71 E-value=0.027 Score=60.86 Aligned_cols=45 Identities=22% Similarity=0.471 Sum_probs=29.6
Q ss_pred CcceEecccccccCCch-hHHHHHhhccccceEEEeecCCCCCCHH
Q 000099 1122 DWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTPLQNDLK 1166 (2240)
Q Consensus 1122 kWd~VIIDEAHrLKN~~-SKlskaLk~Lks~~RLLLTGTPLQNnL~ 1166 (2240)
.+.++||||+|.+.+.. ..+.+.+..+....+++||.+-...-+.
T Consensus 131 ~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~ 176 (252)
T d1sxje2 131 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 176 (252)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCH
T ss_pred CceEEEeccccccccccchhhhcccccccccccceeeeccccchhh
Confidence 57899999999985433 2344555555666778888776544333
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.99 E-value=0.11 Score=55.64 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHH---HHHHHHHHHHHCCCCeEEEE
Q 000099 1005 QIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAV---LVNWKSELHKWLPSVSCIYY 1081 (2240)
Q Consensus 1005 QleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SL---L~QW~~Ef~Kw~PslkVvvy 1081 (2240)
|++-|..++..- ...+-|+..+.|+|||-.++.+..++........-+++|.|... +.+ .+++.+++
T Consensus 2 ~~~~l~~~i~~~-~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~-IR~i~~~~-------- 71 (198)
T d2gnoa2 2 QLETLKRIIEKS-EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFL-------- 71 (198)
T ss_dssp HHHHHHHHHHTC-SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHH--------
T ss_pred HHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHH-HHHHHHHH--------
Confidence 556666555522 34456999999999999998888765432222223566655310 111 11111111
Q ss_pred ecchhhHhHHHHHHHhhcCCcEEEEcHHHHHHhhhhccccCcceEecccccccCC-chhHHHHHhhccccceEEEeecC
Q 000099 1082 VGAKDQRSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKD-RESVLARDLDRYRCQRRLLLTGT 1159 (2240)
Q Consensus 1082 ~GskdeRk~l~~qei~~~~fdVVITTYE~L~kD~s~L~kikWd~VIIDEAHrLKN-~~SKlskaLk~Lks~~RLLLTGT 1159 (2240)
.... ..-.|+++||||||+|.. ....+.+.|.......+++|+.+
T Consensus 72 -------------------------------~~~~--~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~ 117 (198)
T d2gnoa2 72 -------------------------------NYSP--ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 117 (198)
T ss_dssp -------------------------------TSCC--SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred -------------------------------hhCc--ccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccC
Confidence 0001 123689999999999943 23355666666666677777655
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=92.91 E-value=0.096 Score=62.26 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhcCCC-CeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeEEEE
Q 000099 1004 YQIVGLQWMLSLYNNKL-NGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSCIYY 1081 (2240)
Q Consensus 1004 YQleGLqwLlsL~~n~l-nGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkVvvy 1081 (2240)
-|=++++-++...+.+. ..+|..-+|+|||+.+.+++..+ .+|+|||||+. ...+|.++|..|+|...+..+
T Consensus 15 DQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~------~rp~LVVt~n~~~A~qL~~dL~~~l~~~~v~~f 88 (413)
T d1t5la1 15 DQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV------NKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYF 88 (413)
T ss_dssp THHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHHcCCCceeec
Confidence 47778877777666554 45777889999998887766532 36999999976 567899999999998777665
Q ss_pred e
Q 000099 1082 V 1082 (2240)
Q Consensus 1082 ~ 1082 (2240)
.
T Consensus 89 ~ 89 (413)
T d1t5la1 89 V 89 (413)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.73 E-value=0.21 Score=54.95 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHH-HHHHHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVL-VNWKSELHK 1071 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL-~QW~~Ef~K 1071 (2240)
+|.|-|.++|.|. ....+|....|+|||.+.+..+.+++...+ ....+||++++... ..-...+.+
T Consensus 1 ~L~~eQ~~av~~~------~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~ 68 (306)
T d1uaaa1 1 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 68 (306)
T ss_dssp CCCHHHHHHHHCC------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCC------CCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHH
Confidence 4889999999762 234677788999999999988888886543 34579999997654 333344444
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.76 E-value=0.16 Score=54.28 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=31.3
Q ss_pred ccccCcceEecccccccCCch-hHHHHHhhccccceEEEeecCCCCCCHHH
Q 000099 1118 LSKVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTPLQNDLKE 1167 (2240)
Q Consensus 1118 L~kikWd~VIIDEAHrLKN~~-SKlskaLk~Lks~~RLLLTGTPLQNnL~E 1167 (2240)
+...++.+||+||+|++.... ..+...+.......+++++.+....-+.-
T Consensus 97 ~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~ 147 (224)
T d1sxjb2 97 LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEP 147 (224)
T ss_dssp CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred CCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhH
Confidence 334578899999999996432 22334444556666777777765544333
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.71 E-value=0.16 Score=54.08 Aligned_cols=45 Identities=27% Similarity=0.423 Sum_probs=28.3
Q ss_pred ccCcceEecccccccCCc-hhHHHHHhhccccceEEEeecCCCCCC
Q 000099 1120 KVDWKYIIIDEAQRMKDR-ESVLARDLDRYRCQRRLLLTGTPLQND 1164 (2240)
Q Consensus 1120 kikWd~VIIDEAHrLKN~-~SKlskaLk~Lks~~RLLLTGTPLQNn 1164 (2240)
...+.++||||+|.+-.. ...+.+.+.......+++++.+....-
T Consensus 97 ~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 97 SKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 345679999999998542 234555555555566677766544333
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.23 E-value=0.66 Score=51.96 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=26.2
Q ss_pred HHHHHHhhc--CCCCeEEEcCCCchHHHHHHHHHHHHHH
Q 000099 1009 LQWMLSLYN--NKLNGILADEMGLGKTVQVMALIAYLME 1045 (2240)
Q Consensus 1009 LqwLlsL~~--n~lnGILADEMGLGKTIQAIALIa~Lle 1045 (2240)
+..|+..+. ...|.||..+.|.|||..+-.+...+..
T Consensus 27 i~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~ 65 (268)
T d1r6bx2 27 LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 65 (268)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHh
Confidence 444544432 3457899999999999888777666654
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=87.13 E-value=0.64 Score=51.14 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=29.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechHHHHHHHHH
Q 000099 1020 LNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSE 1068 (2240)
Q Consensus 1020 lnGILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~SLL~QW~~E 1068 (2240)
.+.||..+.|+|||..+=++...+ ..+++.|-+..++..|..+
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~~~~~g~ 85 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSDFVEMFVGV 85 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHHHSCTTH
T ss_pred ceEEEecCCCCChhHHHHHHHHHc------CCCEEEEEhHHhhhccccH
Confidence 356899999999998886666422 2467777777676655433
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.12 E-value=0.39 Score=51.21 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=26.8
Q ss_pred ccCcceEecccccccCCch-hHHHHHhhccccceEEEeecCCCCC
Q 000099 1120 KVDWKYIIIDEAQRMKDRE-SVLARDLDRYRCQRRLLLTGTPLQN 1163 (2240)
Q Consensus 1120 kikWd~VIIDEAHrLKN~~-SKlskaLk~Lks~~RLLLTGTPLQN 1163 (2240)
.....++|+||+|.+-... ..+...+.......+++++.+....
T Consensus 107 ~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~ 151 (231)
T d1iqpa2 107 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSK 151 (231)
T ss_dssp GCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhh
Confidence 3467789999999885432 2334444444556677777665433
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=85.23 E-value=1.9 Score=48.07 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=73.6
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHH----HHHHHHHHhcCceEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLL----DILEEYLQWRQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~L----DiLed~L~~rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVf 1400 (2240)
..|||-.+....+......|..|++.+.....+ ..+..+|...|+.+..++|+++..+|.+++...++++.+ |
T Consensus 113 vGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~---i 189 (264)
T d1gm5a3 113 VGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID---V 189 (264)
T ss_dssp SSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC---E
T ss_pred ccccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCC---E
Confidence 468999998888888889999999999876654 445666666689999999999999999999999976655 4
Q ss_pred EEecccc-cccCCCCCCCeEEE
Q 000099 1401 LLSIRAA-GRGLNLQSADTVII 1421 (2240)
Q Consensus 1401 LLSTrAG-GeGLNLQaADtVIi 1421 (2240)
+|.|.++ -..+.+.+...||+
T Consensus 190 iIGThsl~~~~~~f~~Lglvii 211 (264)
T d1gm5a3 190 VIGTHALIQEDVHFKNLGLVII 211 (264)
T ss_dssp EEECTTHHHHCCCCSCCCEEEE
T ss_pred EEeehHHhcCCCCccccceeee
Confidence 5555554 44566666666665
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=84.42 E-value=2 Score=46.99 Aligned_cols=95 Identities=12% Similarity=0.097 Sum_probs=75.9
Q ss_pred hcccHHHHHHHHHHHHHhcCCeEEEEecchhHHHHHHHHHHh----cCceEEeecCCCCHHHHHHHHHHHhcCCCCccEE
Q 000099 1325 KSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQW----RQLVYRRIDGTTSLEDRESAIVDFNSHDSDCFIF 1400 (2240)
Q Consensus 1325 rsSGKLelLdrIL~kL~atGhKVLIFSQ~t~~LDiLed~L~~----rGiky~rLDGsTs~eEReeaIk~FNs~Ds~~fVf 1400 (2240)
..|||-++....+......|..|+|.+.......-+...|+. .++.+..++|.++..+|.++...+.+++.+ +
T Consensus 85 vGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~---i 161 (233)
T d2eyqa3 85 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID---I 161 (233)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS---E
T ss_pred CCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCC---E
Confidence 468999999999999999999999999988777766666654 578899999999999999999999987666 6
Q ss_pred EEecccccc-cCCCCCCCeEEEc
Q 000099 1401 LLSIRAAGR-GLNLQSADTVIIY 1422 (2240)
Q Consensus 1401 LLSTrAGGe-GLNLQaADtVIif 1422 (2240)
|+.|+++-. .|.+...-.||+=
T Consensus 162 viGths~l~~~~~f~~LgLiIiD 184 (233)
T d2eyqa3 162 LIGTHKLLQSDVKFKDLGLLIVD 184 (233)
T ss_dssp EEECTHHHHSCCCCSSEEEEEEE
T ss_pred EEeehhhhccCCccccccceeee
Confidence 777776543 5666565555553
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=84.05 E-value=1 Score=53.07 Aligned_cols=75 Identities=21% Similarity=0.335 Sum_probs=57.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCC-eEEEcCCCchHHHHHHHHHHHHHHHhCCCCCeEEEechH-HHHHHHHHHHHHCCCCeE
Q 000099 1001 LRDYQIVGLQWMLSLYNNKLN-GILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNA-VLVNWKSELHKWLPSVSC 1078 (2240)
Q Consensus 1001 LRPYQleGLqwLlsL~~n~ln-GILADEMGLGKTIQAIALIa~Lle~kg~~GP~LIVVP~S-LL~QW~~Ef~Kw~PslkV 1078 (2240)
...-|-++|+-++...+.+.+ ..|..-+|++||+.+.+++..+ .+|+|||||.. ...+|.+++..|++...+
T Consensus 9 p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~------~rp~LvVt~~~~~A~~l~~dL~~~l~~~~v 82 (408)
T d1c4oa1 9 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPENAV 82 (408)
T ss_dssp CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTSEE
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHhcCccce
Confidence 334577788878777776665 4677789999998877666432 35999999976 578899999999988766
Q ss_pred EEE
Q 000099 1079 IYY 1081 (2240)
Q Consensus 1079 vvy 1081 (2240)
..+
T Consensus 83 ~~f 85 (408)
T d1c4oa1 83 EYF 85 (408)
T ss_dssp EEC
T ss_pred eeC
Confidence 654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.50 E-value=1.3 Score=46.72 Aligned_cols=51 Identities=27% Similarity=0.345 Sum_probs=30.8
Q ss_pred ccCcceEecccccccCCchh-HHHHHhhccccceEEEeecCCCCCCHHHHHH
Q 000099 1120 KVDWKYIIIDEAQRMKDRES-VLARDLDRYRCQRRLLLTGTPLQNDLKELWS 1170 (2240)
Q Consensus 1120 kikWd~VIIDEAHrLKN~~S-KlskaLk~Lks~~RLLLTGTPLQNnL~ELwS 1170 (2240)
...+.+|||||+|.+..... .+...+.......+++++-+-....+..|.+
T Consensus 106 ~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~s 157 (237)
T d1sxjd2 106 CPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 157 (237)
T ss_dssp CCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred ccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccc
Confidence 34677999999999964322 3344444455566666666655544444433
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.12 E-value=1.1 Score=48.14 Aligned_cols=101 Identities=24% Similarity=0.205 Sum_probs=57.4
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHHHHHHhC---CCCC-eEEEechHHHH------HHHHHHHHHCCCCeEEEEecchhh
Q 000099 1018 NKLNGILADEMGLGKTVQVMALIAYLMEFKG---NYGP-HLIIVPNAVLV------NWKSELHKWLPSVSCIYYVGAKDQ 1087 (2240)
Q Consensus 1018 n~lnGILADEMGLGKTIQAIALIa~Lle~kg---~~GP-~LIVVP~SLL~------QW~~Ef~Kw~PslkVvvy~Gskde 1087 (2240)
...|.||..+.|.|||..+-.+...+....- ..+. ++.+-+.+++. +|...+...+
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il-------------- 107 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVL-------------- 107 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHH--------------
T ss_pred CCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHH--------------
Confidence 3457799999999999888777666654211 1123 34444555652 4555444321
Q ss_pred HhHHHHHHHhhcCCcEEEEcHHHHHHhhhhcccc-CcceEecccccccCCchh-----HHHHHhhcc--ccceEEEeecC
Q 000099 1088 RSRLFSQEVAALKFNVLVTTYEFIMYDRSKLSKV-DWKYIIIDEAQRMKDRES-----VLARDLDRY--RCQRRLLLTGT 1159 (2240)
Q Consensus 1088 Rk~l~~qei~~~~fdVVITTYE~L~kD~s~L~ki-kWd~VIIDEAHrLKN~~S-----KlskaLk~L--ks~~RLLLTGT 1159 (2240)
..+.+. .--+++|||.|.+-...+ .....|+-+ +..-+++.+.|
T Consensus 108 ----------------------------~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT 159 (195)
T d1jbka_ 108 ----------------------------NDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT 159 (195)
T ss_dssp ----------------------------HHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEEC
T ss_pred ----------------------------HHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCC
Confidence 111111 123678999999965322 233445533 45667888888
Q ss_pred C
Q 000099 1160 P 1160 (2240)
Q Consensus 1160 P 1160 (2240)
|
T Consensus 160 ~ 160 (195)
T d1jbka_ 160 L 160 (195)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=81.97 E-value=0.82 Score=50.58 Aligned_cols=59 Identities=24% Similarity=0.101 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCCeEEEcCCCchHHHHHHHHHHHHHHHhC-CCCCeEEEechHHHHH
Q 000099 1000 TLRDYQIVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKG-NYGPHLIIVPNAVLVN 1064 (2240)
Q Consensus 1000 tLRPYQleGLqwLlsL~~n~lnGILADEMGLGKTIQAIALIa~Lle~kg-~~GP~LIVVP~SLL~Q 1064 (2240)
.|-+-|.++|++. ....++....|+|||.+.+.-+++|+.... ....+||++++....+
T Consensus 11 ~L~~eQ~~~v~~~------~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~ 70 (318)
T d1pjra1 11 HLNKEQQEAVRTT------EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAR 70 (318)
T ss_dssp TSCHHHHHHHHCC------SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHH
T ss_pred hCCHHHHHHHhCC------CCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHH
Confidence 4889999999742 234677788999999999998888886432 2246899999775433
|