Citrus Sinensis ID: 000137

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860------1870------1880------1890------1900------1910------1920------1930------1940------1950------1960------1970------1980------1990------2000------2010------2020------2030------2040------2050------2060------207

MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFRLAS

cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccc

cccccHHHHHHHHHHHHHHcHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccEEEccccccccccccHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccHccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHcccccEcccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHcHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEcHHHHHHHHHccccEcccccHHHHHHHHHHHHHHHcccccEcEEEEEEHHHHcccccHHcccccHHccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccHccHccccccccccccccHHHHcHccccccccccccccccccccccccHHHHHccccccccEEEEcccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHccccccccccccccccccccccccccccccHHcccccccccHHcccccccccccccccccccccccccHHHHcHHcccHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccHcccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccEEEcc

mlrlsstvPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLnlhgtglknpqlESVVASVFKYimdkpnfstvfSQSVKITEINEQLLENLSDVLnlslperigiglalsdsenldalmcgkNFCMAQIERlcanpvpmnsaEQIQNIIMFLQRSSDLSKHVDSLMQILSLLqskdhtqfvlnpvlpdelhdatslrdldlfhecrdddFDDILAEMEKEMSMGDVmnelgygcsadasQCKEILSLFTPLTEITLSRILGAIARThaglednqntfSTFTLALgcstmsdlpplsswnVDVLVKAIKQlapntnwiRVVENldyegfyiptEEAFSFFMSVYKYacqepfplhavcgsvwknteGQLSFLRYavasppevftfahsarqlpyvdavpglklqsgqanhAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHvnpnivlrgfvdaqnmepdCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVqfgrsqdfsaqpfhhsgaLLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLdstprlqngeaadsstsegyaDDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGnlfeeyrffpkypeRQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDAlrkpadskmfVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISsghlesdgasnpaahqhvssqatsgngevsgsgiTQLGQQLSSQIQLQqrsesvvddrhkvsaasssdmkpllssigqpssvaplgdtssaqKLHNavsapamlsissgfarpsrgvtstkfgsALNIETLVAAAERretpieapasevQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFtskilepcqsslayqppnpwTMAILGLLAEIysmpnlkmnLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgasqpqlvpevkpaivsplghvdlpldvasppnsggpthllsqyaaplrlssgtlmedeKLAALgisdqlpsaqglfqasqsqspfsvsqlstpipnigthvIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSlahvtckeplrgsiSSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRkhregvgssffdpniyaqgsmgvpealrpkpghlsvsqQRVYEdfvrlpwqnqssqgshamsagsltssgdaaqasayglaggqgnqgysssagstgfdavsrpsdvasgttestsagflSTSLVHigaadggilhnsesesvnaaftpAATElyaadstepvkepgassqslpstaaperigssilepslqtrdaLDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYenasnnlhFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLaakpgspesLQQLIEIVRnpaananassgattakddkarqskdkkayshttanredynipesvdpdpvgfpeQVSMLFAEWYQicelpgsndaACTRYVLQLHqngllkgddmTDRFFRRLTEVSVAHClssevinpgtlqspqqsqsLSFLAIDIYAKLMLSILKccpveqgsskiFLLSKILTVTVKFILKDAeekkasfnprpyFRLFINWLldmssldpvadgsnfQILSAFANAFHvlqplkvpafrlas

mlrlsstvpsQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKqlapntnwirVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVvldstprlqngeaadsstseGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSaasssdmkpllSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGvtstkfgsalNIETLVAAAERRETPieapasevqdkISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKnlgswlgkltigrnqvlrareidpkSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSgivqrsvsiatqttkelvlKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKepgassqslpstaaperigSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTswviysdeerkfnrdITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAananassgattakddkarqskdkkayshttanredynipesVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDaeekkasfnprpYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFRLAS

MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWlcldlldvlcqlSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVsgsgitqlgqqlssqiqlqqRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPaananassgattaKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTlqspqqsqslsFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFRLAS

***********IRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVL***************************ANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARI***************************************************************************************************************************GSALNIETLVA***************VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIK******SLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT********************************************************************************************************************PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSL********GSSFFDPNIYA***********************VYEDFVRLPW********************************************************************FLSTSLVHIGAADGGIL***********************************************************DALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLA*******************************************************************GFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVIN************LSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAF****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		2067	2.2.26 [Sep-21-2011]
Q6ZQ08		2375	CCR4-NOT transcription co	yes	no	0.240	0.209	0.356	2e-93
A5YKK6		2376	CCR4-NOT transcription co	yes	no	0.240	0.209	0.354	4e-93
A0JP85		2388	CCR4-NOT transcription co	yes	no	0.251	0.217	0.358	2e-88
A1A5H6		2374	CCR4-NOT transcription co	yes	no	0.112	0.098	0.457	1e-57
P87112		2100	General negative regulato	yes	no	0.104	0.103	0.385	6e-41
P25655		2108	General negative regulato	yes	no	0.124	0.121	0.314	8e-37
Q8Y5X6		365	3-dehydroquinate synthase	yes	no	0.034	0.197	0.370	8e-05

>sp\|Q6ZQ08\|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2	Back alignment and function desciption

 Score =  345 bits (886), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 198/555 (35%), Positives = 306/555 (55%), Gaps = 58/555 (10%)

Query: 948  NIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQ 1007
            NI+TL+ A ++ E  +E P + +Q+KI+FI NN+S  N+  K +E  E +KE++ PW +Q
Sbjct: 1073 NIDTLLVATDQTERIVEPPEN-IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQ 1131

Query: 1008 YMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLL 1067
            Y+VMKR SIEPNFH LY  FLD + +   N+ ++  TY N KVLL S+   ++  +RSLL
Sbjct: 1132 YLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLL 1191

Query: 1068 KNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAY 1125
            KNLG WLG +T+ +N+ +   ++D KSL++EAY KG   ++ V+PF +K+LE    SL +
Sbjct: 1192 KNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSLVF 1251

Query: 1126 QPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEG 1185
            +PPNPWTMAI+ +LAE++   +LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R    
Sbjct: 1252 RPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNL 1311

Query: 1186 NPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLS 1245
            +   S       QP+ +P +     S             PP      H ++ Y+      
Sbjct: 1312 DEQLSAPKKDVKQPEELPAITTTTTSTTPATSTTCTATVPPQPQYSYHDINVYS------ 1365

Query: 1246 SGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTAL 1305
                     LA L                                    H+ +N  +   
Sbjct: 1366 ---------LAGL----------------------------------APHITLNPTIPLF 1382

Query: 1306 GLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHL 1365
              H   ++ V  A++RA++E+V  +V RS+ IA  T +++V KD+A++S+E+R+  AAH 
Sbjct: 1383 QAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRIAAHH 1442

Query: 1366 MVASLAGSLAHVTCKEPLRGSISSQLRNSL-QGLTIAS----ELLEQAVQLVTNDNLDLG 1420
            M+ +L   +A +TC+EPL  SIS+ L+NS    L  AS    E+++QA   +  DN +L 
Sbjct: 1443 MMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDNCELA 1502

Query: 1421 CAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPG 1480
            C  I++ A +KA   +D  +A +  L RKH    G  + DP +    +  +PE +R K G
Sbjct: 1503 CCFIQKTAVEKAGPEMDKRLATEFEL-RKHARQEGRRYCDPVVLTYQAERMPEQIRLKVG 1561

Query: 1481 HLSVSQQRVYEDFVR 1495
             +   Q  VYE+F R
Sbjct: 1562 GVDPKQLAVYEEFAR 1576

Belongs to the CCR4-NOT complex that functions as general transcription regulation complex. Acts as a transcriptional repressor. Represses the ligand-dependent transcriptional activation by nuclear receptors.
Mus musculus (taxid: 10090)

>sp\|A5YKK6\|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2	Back alignment and function description

>sp\|A0JP85\|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1	Back alignment and function description

>sp\|A1A5H6\|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1	Back alignment and function description

>sp\|P87112\|NOT1_SCHPO General negative regulator of transcription subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not1 PE=1 SV=1	Back alignment and function description

>sp\|P25655\|NOT1_YEAST General negative regulator of transcription subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC39 PE=1 SV=3	Back alignment and function description

>sp\|Q8Y5X6\|AROB_LISMO 3-dehydroquinate synthase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=aroB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2067
255541160		2330	ccr4-not transcription complex, putative	0.954	0.846	0.719	0.0
449433000		2427	PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT	0.983	0.837	0.706	0.0
356523091		2424	PREDICTED: CCR4-NOT transcription comple	0.986	0.841	0.714	0.0
224063675		1987	predicted protein [Populus trichocarpa]	0.950	0.988	0.709	0.0
357512789		2410	CCR4-NOT transcription complex subunit [	0.977	0.838	0.675	0.0
357512787		2418	CCR4-NOT transcription complex subunit [	0.977	0.835	0.675	0.0
297734545		2452	unnamed protein product [Vitis vinifera]	0.981	0.827	0.673	0.0
356504613		2327	PREDICTED: CCR4-NOT transcription comple	0.947	0.841	0.685	0.0
359489261		2333	PREDICTED: CCR4-NOT transcription comple	0.953	0.844	0.651	0.0
297842912		2379	hypothetical protein ARALYDRAFT_887229 [	0.977	0.849	0.629	0.0

>gi\|255541160\|ref\|XP_002511644.1\| ccr4-not transcription complex, putative [Ricinus communis] gi\|223548824\|gb\|EEF50313.1\| ccr4-not transcription complex, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 3016 bits (7818), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1487/2068 (71%), Positives = 1704/2068 (82%), Gaps = 95/2068 (4%)

Query: 1    MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGL 60
            M  LSST+ +Q+RFLL SLNE N DSVFRELC+F E G++ S ++LQTC++H+N   T L
Sbjct: 1    MPTLSSTISNQVRFLLHSLNEDNLDSVFRELCKFTENGLDESIVVLQTCLEHVNFQRTDL 60

Query: 61   KNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLA 120
            KN QL+ V+ S+FK+++D+PNFSTV  QS++ +EI+E+ L+N S+VL+LSL E+I IGLA
Sbjct: 61   KNMQLQPVILSIFKFLLDRPNFSTVLCQSLRSSEISEEFLDNFSNVLHLSLSEKIAIGLA 120

Query: 121  LSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQI 180
            LSDSEN++  M  K FC+AQIE LC+NPV MNSA+QIQNI+MFLQ+S   +KHVD  +Q+
Sbjct: 121  LSDSENIETRMGAKKFCIAQIEELCSNPVSMNSAQQIQNIVMFLQQSEGHTKHVDPFLQM 180

Query: 181  LSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMN 240
            LSL+Q KD   F L P+L DE+ +A  LR++DLFHEC++++FD +LAEMEKEM+ G+++ 
Sbjct: 181  LSLVQPKDVFPFFLTPLLSDEMREANFLRNMDLFHECQENEFDALLAEMEKEMNAGEIVK 240

Query: 241  ELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCST 300
            ELGYGC+ D+S CKEILS F PLTE T+S+ILG IAR HAGLE+NQ+TFS F LALGCS 
Sbjct: 241  ELGYGCTFDSSHCKEILSNFLPLTESTISKILGTIARNHAGLEENQSTFSNFGLALGCSI 300

Query: 301  MSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQ 360
             +DLPPL SW++D+LVK IKQLAP TNWI+VVEN+DYEGFYIP EEAFSFFMSVY++A Q
Sbjct: 301  STDLPPLGSWDIDILVKTIKQLAPGTNWIKVVENMDYEGFYIPNEEAFSFFMSVYRHASQ 360

Query: 361  EPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQAN 420
            + FP+H +CGSVWKN  GQLS L+YAV +PPEVFTFAHS RQL Y DAV G KLQ G AN
Sbjct: 361  DLFPVHVLCGSVWKNALGQLSLLKYAVLAPPEVFTFAHSGRQLVYNDAVHGQKLQVGHAN 420

Query: 421  HAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFA 480
            HAWL LDLL+VLCQL+E GH+S  RS+LEYPLK CPE+LLLGM+HINTAY L+QYEVSF 
Sbjct: 421  HAWLSLDLLEVLCQLAERGHSSSVRSILEYPLKHCPEILLLGMSHINTAYKLLQYEVSFT 480

Query: 481  VFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEM 540
            VFPMIIKST S+GMIL++WH+NPN+V+RGFVDA N+EPDCTI+IL+ICQELKILSSVL+M
Sbjct: 481  VFPMIIKSTTSSGMILYLWHINPNVVVRGFVDAYNIEPDCTIKILDICQELKILSSVLDM 540

Query: 541  IPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPF 600
            IP    IRLAV+AS+KEL+DLEKWL+ NL  YKD FFEE               FS++PF
Sbjct: 541  IPYAIGIRLAVLASRKELIDLEKWLTTNLIAYKDFFFEE---------------FSSKPF 585

Query: 601  HHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSS 660
            HH+ +++N+YME   + LK+LKA  GLI S++LS+E+E+    + DS PRLQNG +ADSS
Sbjct: 586  HHASSVVNIYMEASSIFLKVLKAQTGLIISSQLSDEMERLHITITDSNPRLQNGGSADSS 645

Query: 661  TSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEY 720
            T E ++DD+EAEANSYFHQMFSGQLTIEAMVQMLARFKES V+RE  IFECMIGNLFEEY
Sbjct: 646  TPEPFSDDVEAEANSYFHQMFSGQLTIEAMVQMLARFKESPVRREQLIFECMIGNLFEEY 705

Query: 721  RFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE 780
            RFFPKYPERQL+IAAVLFGS+IKHQLVTHLTLGIALRGVLDALRKP DSKMF+FGTKAL+
Sbjct: 706  RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFIFGTKALD 765

Query: 781  QFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVS 840
            QFVDRLIEWPQYCNHILQISHLR+TH+E+V+FIER LARISSGHLESDG +  A+H H  
Sbjct: 766  QFVDRLIEWPQYCNHILQISHLRTTHSEIVSFIERQLARISSGHLESDGNNGSASHHHGL 825

Query: 841  SQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQP 900
            SQA+SGNGE+    I Q  QQLSS + +QQR ES +D+RHKV  ASS+D K +LSS GQ 
Sbjct: 826  SQASSGNGELISVNIPQSVQQLSSTLNVQQRHESPLDERHKVFLASSNDTKSVLSSGGQ- 884

Query: 901  SSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRE 960
            SSVAPL D S AQK  +A  A AMLS S GF RPSRGVTSTKFGSALNI TL AAAERRE
Sbjct: 885  SSVAPLSDNSIAQK--SAAGATAMLSSSHGFIRPSRGVTSTKFGSALNIGTLEAAAERRE 942

Query: 961  TPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF 1020
            TPIEAPASE+QDKISFIINNISA N+EAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF
Sbjct: 943  TPIEAPASEIQDKISFIINNISAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF 1002

Query: 1021 HDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG 1080
            HDLYLKFLDKV+SKALN+EIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG
Sbjct: 1003 HDLYLKFLDKVSSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG 1062

Query: 1081 RNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLA 1140
            RN VLR REIDPKSLIIEAYEKGLMIAVIPFTSK                          
Sbjct: 1063 RNHVLRGREIDPKSLIIEAYEKGLMIAVIPFTSK-------------------------- 1096

Query: 1141 EIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQ 1200
                             VLFKNLGVDMKDI PTSLLKDRKRE+EGNPDFSNKDVG SQPQ
Sbjct: 1097 -----------------VLFKNLGVDMKDIAPTSLLKDRKREMEGNPDFSNKDVGVSQPQ 1139

Query: 1201 LVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGI 1260
            +VPEVKP I+SPL HVDLPL+VA+PPN+ G THLL QYAAP+ LS GTL EDEKLAALG+
Sbjct: 1140 IVPEVKPGIISPLNHVDLPLEVANPPNAVGHTHLLPQYAAPVNLSVGTLTEDEKLAALGM 1199

Query: 1261 SDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMD 1320
            SDQLP  QGLFQA+ +QSPFSVSQL T +PN GT VIINQK  + GLHLHFQR+VP+ MD
Sbjct: 1200 SDQLPPGQGLFQATPNQSPFSVSQLPTALPNFGTLVIINQKFNSWGLHLHFQRLVPLVMD 1259

Query: 1321 RAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCK 1380
            RA+KEIVS IVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCK
Sbjct: 1260 RAVKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCK 1319

Query: 1381 EPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEI 1440
            EPLR SIS+QLRNSLQGL   S+LLE AVQL TNDNLDLGCA IEQAATDKAIQTID EI
Sbjct: 1320 EPLRNSISTQLRNSLQGLNSTSDLLEHAVQLATNDNLDLGCAAIEQAATDKAIQTIDAEI 1379

Query: 1441 AQQLSLRRKHREGVGSSFFDPNIYAQGSMG-VPEALRPKPGHLSVSQQRVYEDFVRLPWQ 1499
            AQQLSLRRKHR+GVG +FFD N+Y+QGSMG VPEALRPKPGHLSVSQQRVYEDFVRLPWQ
Sbjct: 1380 AQQLSLRRKHRDGVGPTFFDANLYSQGSMGVVPEALRPKPGHLSVSQQRVYEDFVRLPWQ 1439

Query: 1500 NQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGT 1559
            NQS QGSH +  GS TS+   A A AYG   GQ N GYSS+ G+ GF+AVSR  D+ S  
Sbjct: 1440 NQSGQGSHTIPMGSSTSAVSTALAGAYGSGSGQLNPGYSSAPGNVGFEAVSRTLDMGSDA 1499

Query: 1560 TESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAA-TELYAADSTEPVKEPGASS 1618
            TES SA  LS+S +HIGA DG I  NSE+ + + +F+ AA    ++ D+++ VKE G SS
Sbjct: 1500 TESNSAAILSSSSIHIGATDGAIQPNSENSATSVSFSSAAPASEHSGDTSDTVKELGISS 1559

Query: 1619 QSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEI 1678
            Q + S+AA +R+ +S  EP+L TRDALDKY IVAQKL+AL+ +D RE E+QG+I+EVPEI
Sbjct: 1560 QPISSSAASDRLVTSASEPTLNTRDALDKYQIVAQKLEALVSSDGREVEIQGLITEVPEI 1619

Query: 1679 ILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYS 1738
            ILRC+SRDEAALAVAQKVFKGLYENASNN H +A LAILAAIRDVCKLVVKELTSWVIYS
Sbjct: 1620 ILRCVSRDEAALAVAQKVFKGLYENASNNFHVNACLAILAAIRDVCKLVVKELTSWVIYS 1679

Query: 1739 DEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV 1798
            DEERKFN+DIT+GLIRSELLNLAEYNVHMAKLIDGGRNK ATEF+ISL+Q LV +ES+ V
Sbjct: 1680 DEERKFNKDITVGLIRSELLNLAEYNVHMAKLIDGGRNKGATEFSISLIQALVVEESK-V 1738

Query: 1799 ISELHNLVDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKA 1858
            ISELHNLVDALAKLAAKPGS ESLQQLIEIVRNP AN+   SG T  K+DK+RQS+DKK 
Sbjct: 1739 ISELHNLVDALAKLAAKPGSSESLQQLIEIVRNPVANSAVISGFTVGKEDKSRQSRDKK- 1797

Query: 1859 YSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNG 1918
                                       VS+LFAEW++IC+LPG+NDAA T Y+LQLHQNG
Sbjct: 1798 ---------------------------VSLLFAEWFRICDLPGANDAASTHYILQLHQNG 1830

Query: 1919 LLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK 1978
            LLKGDDMTDRFFR +TE+SVAHCLSSEVIN G LQSPQQ Q+LSFLAIDIYAKL+ SILK
Sbjct: 1831 LLKGDDMTDRFFRIITELSVAHCLSSEVINSGALQSPQQGQNLSFLAIDIYAKLVFSILK 1890

Query: 1979 CCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVAD 2038
               VEQGS++ FLLSKIL VTV+FI KD+EEKK SFNPRPYFRLF+NWLLD+ S DP+ D
Sbjct: 1891 ---VEQGSNRFFLLSKILAVTVRFIQKDSEEKKLSFNPRPYFRLFVNWLLDLVSPDPIID 1947

Query: 2039 GSNFQILSAFANAFHVLQPLKVPAFRLA 2066
            G+N QIL+AFANAFH LQPLKVPAF  A
Sbjct: 1948 GTNLQILTAFANAFHNLQPLKVPAFSFA 1975

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449433000\|ref\|XP_004134286.1\| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356523091\|ref\|XP_003530175.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|224063675\|ref\|XP_002301259.1\| predicted protein [Populus trichocarpa] gi\|222842985\|gb\|EEE80532.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357512789\|ref\|XP_003626683.1\| CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|355520705\|gb\|AET01159.1\| CCR4-NOT transcription complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357512787\|ref\|XP_003626682.1\| CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|355520704\|gb\|AET01158.1\| CCR4-NOT transcription complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297734545\|emb\|CBI16596.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356504613\|ref\|XP_003521090.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|359489261\|ref\|XP_003633901.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297842912\|ref\|XP_002889337.1\| hypothetical protein ARALYDRAFT_887229 [Arabidopsis lyrata subsp. lyrata] gi\|297335179\|gb\|EFH65596.1\| hypothetical protein ARALYDRAFT_887229 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2067
ZFIN\|ZDB-GENE-040915-1		2375	cnot1 "CCR4-NOT transcription	0.167	0.145	0.359	9.5e-200
MGI\|MGI:2442402		2375	Cnot1 "CCR4-NOT transcription	0.139	0.121	0.418	1.4e-199
UNIPROTKB\|F1MHU9		2371	CNOT1 "Uncharacterized protein	0.159	0.138	0.387	2.2e-199
UNIPROTKB\|A5YKK6		2376	CNOT1 "CCR4-NOT transcription	0.159	0.138	0.387	2.3e-199
UNIPROTKB\|G3V7M0		2376	Cnot1 "RCG39079" [Rattus norve	0.139	0.121	0.418	3.6e-199
UNIPROTKB\|F1RFU3		2375	CNOT1 "Uncharacterized protein	0.159	0.138	0.387	6e-199
DICTYBASE\|DDB_G0276029		2526	DDB_G0276029 "putative CCR4-NO	0.304	0.249	0.254	4.1e-191
UNIPROTKB\|E1BXD4		2129	LOC100858397 "Uncharacterized	0.158	0.154	0.361	2.8e-190
FB\|FBgn0085436		2505	Not1 "Not1" [Drosophila melano	0.274	0.226	0.348	1.7e-153
ASPGD\|ASPL0000078074		2317	AN4965 [Emericella nidulans (t	0.109	0.097	0.451	2e-124

ZFIN\|ZDB-GENE-040915-1 cnot1 "CCR4-NOT transcription complex, subunit 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 586 (211.3 bits), Expect = 9.5e-200, Sum P(5) = 9.5e-200
 Identities = 130/362 (35%), Positives = 207/362 (57%)

Query:   882 VSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTST 941
             ++ A +    P     GQ S++     T++       ++ P  +        P + V  +
Sbjct:  1009 LAQAQAQSQPPKAPQPGQASTLVTTATTTTTAAKTTTITRPTAVG-------PKKDVPPS 1061

Query:   942 KFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQY 1001
                +  NI+TL+ A ++ E  +E P + VQ+KI+FI NN+S  N+  K +E  E +KE++
Sbjct:  1062 I--NTTNIDTLLVATDQTERIVEPPEN-VQEKIAFIFNNLSQSNMSQKVEELKETVKEEF 1118

Query:  1002 YPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSS 1061
              PW +QY+VMKR SIEPNFH LY  FLD + +    + ++  TY N KVLL S+   ++ 
Sbjct:  1119 MPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANF 1178

Query:  1062 EERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPC 1119
              +RSLLKNLG WLG +T+ +N+ +   +++ KSL++EAY KG   ++ V+PF +K+LE  
Sbjct:  1179 SDRSLLKNLGHWLGMITLAKNKPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESS 1238

Query:  1120 QSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLL--K 1177
               S+ ++P NPWTM I+ +LAE++   +LK+NLKF+IEVL KNL +D+ D+ P +LL  K
Sbjct:  1239 LRSVIFRPQNPWTMGIMNVLAELHQEHDLKLNLKFEIEVLCKNLSMDITDLKPGNLLRDK 1298

Query:  1178 DRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHV-DLPLDVASPPNSGGPTHLLS 1236
             D+ + +E       K+    + +L+P V  A   P       P    +   +G PT   S
Sbjct:  1299 DKLKTLEEQLSAPKKETKPPE-ELLPIVTTADSVPFTAAPSTPATTTACTATGPPTPQFS 1357

Query:  1237 QY 1238
              +
Sbjct:  1358 YH 1359

GO:0005575 "cellular_component" evidence=ND

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

MGI\|MGI:2442402 Cnot1 "CCR4-NOT transcription complex, subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MHU9 CNOT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|A5YKK6 CNOT1 "CCR4-NOT transcription complex subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V7M0 Cnot1 "RCG39079" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RFU3 CNOT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0276029 DDB_G0276029 "putative CCR4-NOT complex subunit 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BXD4 LOC100858397 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0085436 Not1 "Not1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000078074 AN4965 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		2067
pfam12842		147	pfam12842, DUF3819, Domain of unknown function (DU	3e-63
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	2e-46
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	4e-46
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	1e-34
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	5e-21
pfam04054		375	pfam04054, Not1, CCR4-Not complex component, Not1	0.002

>gnl\|CDD\|221802 pfam12842, DUF3819, Domain of unknown function (DUF3819)	Back alignment and domain information

 Score =  211 bits (539), Expect = 3e-63
 Identities = 85/147 (57%), Positives = 114/147 (77%), Gaps = 2/147 (1%)

Query: 1308 HLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMV 1367
            H   +R+V +A+DRAI+EI+S +V+RSV+IA  TT+ELV KD+A+E DE ++  AAH MV
Sbjct: 1    HPDLKRLVQLALDRAIREIISPVVERSVTIAAITTEELVRKDFALEPDENKLRRAAHNMV 60

Query: 1368 ASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTI--ASELLEQAVQLVTNDNLDLGCAVIE 1425
             SLAGSLA VTCKEPLR SIS+ LR+ LQ L      EL EQAVQ++ NDNL+L CA+IE
Sbjct: 61   RSLAGSLALVTCKEPLRESISNNLRSLLQTLLTSPDQELPEQAVQILVNDNLELACALIE 120

Query: 1426 QAATDKAIQTIDGEIAQQLSLRRKHRE 1452
            +AA +KA++ ID ++A ++ LRR+HRE
Sbjct: 121  KAAAEKAVREIDEKLAPEIELRRRHRE 147

This is an uncharacterized domain that is found on the CCR4-Not complex component Not1. Not1 is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID. Length = 147

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|217865 pfam04054, Not1, CCR4-Not complex component, Not1	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		2067
COG5103		2005	CDC39 Cell division control protein, negative regu	100.0
KOG1831		1591	consensus Negative regulator of transcription [Tra	100.0
PF12842		147	DUF3819: Domain of unknown function (DUF3819); Int	100.0
KOG1831		1591	consensus Negative regulator of transcription [Tra	97.34
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	92.57
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	87.8
KOG1467		556	consensus Translation initiation factor 2B, delta	82.8

>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

Probab=100.00  E-value=9.1e-224  Score=2031.81  Aligned_cols=1600  Identities=25%  Similarity=0.377  Sum_probs=1210.0

Q ss_pred             CCcHHHHHHHHHhhhhhchHHHHHHHHHHHH-hcccchhHHHHhhhhccccCC-CCCCCch---hHHHHHHHHHHhhcCC
Q 000137            6 STVPSQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHLNLHG-TGLKNPQ---LESVVASVFKYIMDKP   80 (2067)
Q Consensus         6 ~~~~~qi~~Lv~~l~k~n~~~~~~el~qlv~-~G~ea~~~lL~~~l~~~~~~~-~~~k~~~---~~~Ll~~~~~~ll~kp   80 (2067)
                      +.+-+||.+|++.|++.||++.-+||.|+++ ...+-.++.||.++.--.++- +.+|...   --++|-+||+.++.|-
T Consensus        25 sIV~AQI~fLlsTL~eDqydt~~eqIRqlinkna~~vY~~~~rRLiq~nS~~If~tGK~~~~~a~~~~LL~Elks~~~Kr  104 (2005)
T COG5103          25 SIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKKR  104 (2005)
T ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHccCCcHHHHHHHHHHhcccchhhhccCcccchhHHHHHHHHHHHhhhhhh
Confidence            4577899999999999999999999999997 999999999999996443311 2355444   4588999999999865


Q ss_pred             CccchhhhhccCcccCHHHHHHHHhhcCCCchhHHH--HhhhhccCCChHHHHHHHHHHHHHHHHHhhCCCC------CC
Q 000137           81 NFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIG--IGLALSDSENLDALMCGKNFCMAQIERLCANPVP------MN  152 (2067)
Q Consensus        81 nf~T~lc~A~~~~~~~~~fl~~ls~~L~Ls~~qev~--~gLAL~~s~n~e~~~~g~~f~~~~l~el~~~~~~------~~  152 (2067)
                      .     ..|+.+.+  ++-++++          +..  +||.++             .+++..-.+. |...      ++
T Consensus       105 ~-----sD~Is~~d--sevFed~----------~FQ~siGlT~S-------------Ll~n~Fqs~~-Nq~~~~t~qqS~  153 (2005)
T COG5103         105 F-----SDAISGSD--SEVFEDF----------HFQFSIGLTTS-------------LLKNTFQSLL-NQLSDPTQQQSI  153 (2005)
T ss_pred             h-----hhHhhcch--hhhhcch----------hhhhhhhhhHH-------------HHHHHHHHHH-hhccchHhhhhc
Confidence            4     66666642  2333333          122  333333             2222222221 2111      11


Q ss_pred             CHHHHHHHHHHHhhccchhH-hHHHHHHHHhhhcCCCCCCccccCCCCCccccccccccccccccCCCcchHHHHHhhhh
Q 000137          153 SAEQIQNIIMFLQRSSDLSK-HVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEK  231 (2067)
Q Consensus       153 s~e~lh~il~~l~~~~gl~~-~~~~f~~~l~~~~p~~~~p~~laPll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (2067)
                      .-+-+.    .|+  +|-.. ...-|.+.+...--..+      |++.              +.+.++.+- +.+..+  
T Consensus       154 d~NDld----~lr--~~~Tdydr~~f~q~i~~~Le~s~------~~~~--------------~~~p~e~~~-~~l~~~--  204 (2005)
T COG5103         154 DKNDLD----LLR--EGTTDYDRKIFRQEIKDVLEKSD------PLTA--------------LFGPREVDR-SFLDDA--  204 (2005)
T ss_pred             ccchHH----HHh--cCCchHHHHHHHHHhHHHHHcCC------chhh--------------hcCcchhhH-HHHHHH--
Confidence            101010    111  12110 01122222211100000      0000              000011000 111111  


Q ss_pred             cCcHHHHHHHhCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccCCccCccchhhHhhhccCCCCCCCCCCCCCC
Q 000137          232 EMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWN  311 (2067)
Q Consensus       232 ~~sl~~~i~elG~~~t~s~~~c~~~L~~~~~l~e~~va~~l~~ma~t~sgl~~~~~~~~~~~~~~g~~~~~~~~~~~~Wn  311 (2067)
                                           ..++|+-.+.-.+.|||+.+-.|+.                          -+..+.||
T Consensus       205 ---------------------l~~Il~P~~~~~~~dvar~il~~~~--------------------------~~D~~~w~  237 (2005)
T COG5103         205 ---------------------LQRILRPRREVVPEDVARAILFMAD--------------------------FPDRGEWN  237 (2005)
T ss_pred             ---------------------HHHHhCCCccCCcchHHHHHhhhhh--------------------------cccccccc
Confidence                                 3345553446888899998444442                          22356799


Q ss_pred             HHHHHHHHHhhCCCCCHHHHHHhcCCCCCCCCChhhHHHHHHHHhh-hcCCCcccccccCCcccChhh-hHHHHHHHhhC
Q 000137          312 VDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKY-ACQEPFPLHAVCGSVWKNTEG-QLSFLRYAVAS  389 (2067)
Q Consensus       312 ~~vlv~alk~~~p~lnW~~Vi~~lD~~~f~i~d~~~l~ll~~~~~~-~~~~~Fpi~~l~~~~W~N~~~-Qlsfl~~~l~~  389 (2067)
                      .-..+.+++..+..+||.+|+.+||.+.|.|+....+..++.+|-. +.+.+||.+.+|. .|||... |+++.-|..+.
T Consensus       238 ~v~~~~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~~-~Wkn~~~~~l~i~lhi~s~  316 (2005)
T COG5103         238 LVAIVGAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFFK-RWKNERAQILFIRLHIESD  316 (2005)
T ss_pred             hHHHHHHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHHH-HhcchhhhhHhhheeeeec
Confidence            9999999999999999999999999999999977766666665554 4567899999995 8999999 55556666677


Q ss_pred             CCCccccCc-CccccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhcChhHHHHHHhcc-
Q 000137          390 PPEVFTFAH-SARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHI-  466 (2067)
Q Consensus       390 p~~~f~f~~-~~~~~v~~d~~~~~~~~~-~~~~~~W~sldL~e~L~~Lae~~~~~~v~~l~e~p~k~~pe~lllgl~~i-  466 (2067)
                      +...|+... .+.+.|..+...+.+... -...+++||.+|++++ .+++.....-..++|   +...||++.+||..+ 
T Consensus       317 ~~~~fd~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~-~l~~~p~i~y~~~lF---lN~~pE~~~a~L~~~~  392 (2005)
T COG5103         317 EKRTFDYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCI-MLGSLPLIEYIARLF---LNKSPEWCAAGLGFVQ  392 (2005)
T ss_pred             ccchheecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHH-HhccchHHHHHHHHH---hccCHHHHHHHHHHhh
Confidence            777777654 345555554433332222 2477999999999999 344333323333466   789999999999754 


Q ss_pred             ----CcchhHHHHHHHHhhhHHhHc-CCCchHHHHHHhhcCchhhHHHHHHhhhcCCccHHHHHHHHHHhhhhhhhhccC
Q 000137          467 ----NTAYNLIQYEVSFAVFPMIIK-STMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMI  541 (2067)
Q Consensus       467 ----~~~~~~l~~ell~~l~~~fl~-~~~~~~vi~~lW~~~~~~~~~~l~d~y~~d~~~l~rIldvaqelk~L~~ll~~~  541 (2067)
                          +-.||+.+.+.+...+-+++. ..+|++|+..+...+|+++++...-...+|...++|++|+.-|+|.|+.+.|..
T Consensus       393 ~~f~~L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l~~V~n~l  472 (2005)
T COG5103         393 PKFSPLAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKMLPLVSNLL  472 (2005)
T ss_pred             hhhhhhhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCchhhhhhcC
Confidence                447999999988888888775 458899999999999999999998778999999999999999999999999999


Q ss_pred             CchhHHHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhHHH
Q 000137          542 PSPFAIRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPV  616 (2067)
Q Consensus       542 pf~f~idLA~lAsrre~l~lekWL~~~l~~~~~-~----f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~etv~~  616 (2067)
                      |..|++|+++|++.|+.++|..|+..++....+ +    |+...++||+.|+.......+.   ...+-+  ++..|+-.
T Consensus       473 P~~f~~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q---~ee~~~--f~~~tvie  547 (2005)
T COG5103         473 PPEFCFDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQ---KEESVM--FPLNTVIE  547 (2005)
T ss_pred             CHHHHHHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhh---ccccee--eehhhHHH
Confidence            999999999999999999999999999987665 3    9999999999999754321110   011222  34456655


Q ss_pred             HHHHHHhhhCCCCchHHHHHHHHHHHHhhccCCCCCCCC-CCCCC-----CCCCCchhHHHHHHHHHHHhhccCCCHHHH
Q 000137          617 ILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGE-AADSS-----TSEGYADDIEAEANSYFHQMFSGQLTIEAM  690 (2067)
Q Consensus       617 ll~~L~~~~~~~~s~~~~e~l~~~~~~~l~~~PRL~n~~-~~d~~-----~~~~f~~dVE~Ean~yfqkmY~~eisI~~i  690 (2067)
                      +|..+......     -.+.++.++..|++.||||+++| +||+.     +.++++.|||+||.+|||+||+++++|+++
T Consensus       548 il~t~~~~V~q-----~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~~~~I~~~  622 (2005)
T COG5103         548 ILGTFTKAVEQ-----YIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNSQRGIESS  622 (2005)
T ss_pred             HHHHhHHHHHH-----HHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHhcccHHHH
Confidence            55554332221     15677888889999999999997 67763     456799999999999999999999999999


Q ss_pred             HHHHHHhhcCCcccchhhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCCc
Q 000137          691 VQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSK  770 (2067)
Q Consensus       691 v~~L~~~k~S~~~rdqdvFaCMih~LFdEYrff~~YP~~eL~~TA~LFG~lI~~~Lv~~~~L~iALr~ILeAlr~p~~sk  770 (2067)
                      |+.||+|++|++|||+|+|+|+.|.|||||+||++||.++|++|||||||||+++|+++.+|++|+|||..++++|++||
T Consensus       623 I~~l~~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~lk~P~~sk  702 (2005)
T COG5103         623 INQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSLKHPENSK  702 (2005)
T ss_pred             HHHHHHHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhccCCCCCCCCCCCcccccccccccCCCCCc
Q 000137          771 MFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEV  850 (2067)
Q Consensus       771 mf~FGi~AL~~F~~RL~ewPqyC~~Ll~ip~L~~~~p~l~~~i~~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~~~~~~  850 (2067)
                      ||+||+|||++|+.||++||+||+.++.||.|+. .|++|+.|-++..    ..+.       .+               
T Consensus       703 mf~Fg~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~~---------------  755 (2005)
T COG5103         703 MFSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------EV---------------  755 (2005)
T ss_pred             hHHHHHHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------cc---------------
Confidence            9999999999999999999999999999999965 9999998876642    1000       00               


Q ss_pred             CCCCccccccchhhHHHhhhcccccccccccccccccCCCCCCcccCCCCCCcCCCCCCchhhhhcccCCCccccccCCC
Q 000137          851 SGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSG  930 (2067)
Q Consensus       851 ~~~~~~~~~~q~~~~~~~qq~~~~~l~~~~~~~~~~~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  930 (2067)
                                                           +..+|.-++++.                             ..
T Consensus       756 -------------------------------------Eka~p~~pm~pl-----------------------------~~  769 (2005)
T COG5103         756 -------------------------------------EKANPTHPMLPL-----------------------------ED  769 (2005)
T ss_pred             -------------------------------------cccCCCCcccch-----------------------------hh
Confidence                                                 001111111100                             00


Q ss_pred             ccCCCCCccccccccccchhHHHHHhhhcCCCcCCCChhhhhhHhhhhhccChhhHHHHHHHHHHHhhhcChhhhhHHHH
Q 000137          931 FARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMV 1010 (2067)
Q Consensus       931 ~~~~~~~~~~~~~~~~~ni~tL~~~~e~~~~~~~~P~e~v~dKI~FiiNNls~~Nl~~K~~El~~~L~~~y~~WFA~YLV 1010 (2067)
                      |++--                 +    +-+.+.|.-++++..+|+|.+||++..|+..|++|+|+-|+|.|.+||+.|||
T Consensus       770 fv~~~-----------------v----~c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~wfs~y~v  828 (2005)
T COG5103         770 FVRLI-----------------V----KCDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMV  828 (2005)
T ss_pred             hheeE-----------------e----ccccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCcccccceeeEEE
Confidence            11100                 0    00122344567788889999999999999999999999999999999999999


Q ss_pred             hhhcccCCchhHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcchhcccChHHHHHHHHhhHhHhhhhhhcCcccccCCC
Q 000137         1011 MKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREI 1090 (2067)
Q Consensus      1011 ~kRas~EpN~H~LY~~fld~l~~~~L~~~il~~Ty~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarNkPI~~k~l 1090 (2067)
                      .+|++.|||||+||.++++.++++.||+.+.+.|++.++.||+...-  +++|+++|||||+|||+|||||||||+|+++
T Consensus       829 tqR~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~NkpIt~~q~  906 (2005)
T COG5103         829 TQRSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNKPITSEQF  906 (2005)
T ss_pred             EeeccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcCccccccc
Confidence            99999999999999999999999999999999999999999987644  8899999999999999999999999999999


Q ss_pred             ChhHHHHHHHhcCceeEEechhhhhcccccCCccccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHhhcCCCcccc
Q 000137         1091 DPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDI 1170 (2067)
Q Consensus      1091 d~K~LL~eaY~~g~L~~VIPFV~KVLe~~~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~di 1170 (2067)
                      |||++|+|||+.||+..|||||||||++++.|+||||||||+||||+||.|||+++++||+||||||+|+|+||++++.|
T Consensus       907 ~Fk~~lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~lnv~~~~i  986 (2005)
T COG5103         907 DFKKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPI  986 (2005)
T ss_pred             cHHHHHHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhcceeeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccchhh---hcCCCCCCCCccCCCCCcccCCCCcCccCCCCCCCCCCCCCCCCCCCCCcccccccccccccCcC
Q 000137         1171 TPTSLLKDRKRE---IEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSG 1247 (2067)
Q Consensus      1171 ~ps~~L~~r~~~---~~~~~d~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~~~~~~~~~~ 1247 (2067)
                      ||++.++++.-.   ++.               ..|+.      -++ .+.|.++          .+++||...      
T Consensus       987 kPs~~~~n~~V~ks~LEk---------------e~~Ed------vL~-a~~~d~~----------~~~~qyi~~------ 1028 (2005)
T COG5103         987 KPSKSLGNHLVLKSRLEK---------------ELPED------VLN-AKFPDGT----------DYLAQYIIE------ 1028 (2005)
T ss_pred             ChhhhhCcHHHHHHHHhh---------------hchHH------HHh-hhccccc----------hHHHHHHHH------
Confidence            999998775421   110               01110      000 0001000          023333210      


Q ss_pred             cchhHHHHhhccCCCCCCcccccccccCCCCCCCccccccCCCCCCccEeecccccccccchhhhhhHHHHHHHHHHhhh
Q 000137         1248 TLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIV 1327 (2067)
Q Consensus      1248 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~~~~l~~~~~in~~l~~f~~~p~Lk~iv~~Ai~rAIrEIi 1327 (2067)
                          +                        ++.++..+..+       .+...|       -|.+|++.++|++.+||||+
T Consensus      1029 ----~------------------------sSq~TvtD~va-------~~~g~P-------~PaiK~~~Qlal~~SVrEI~ 1066 (2005)
T COG5103        1029 ----D------------------------SSQITVTDLVA-------RHVGSP-------KPAIKNLTQLALDLSVREIC 1066 (2005)
T ss_pred             ----h------------------------hhcchHHHHHH-------HHcCCC-------ChHHHHHHHHHHHHHHHHHH
Confidence                0                        00111111111       111122       28999999999999999999


Q ss_pred             hhcchhhhHHHHHHhHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhHHHHchHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 000137         1328 SGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQ 1407 (2067)
Q Consensus      1328 ~PVVeRSvtIA~iTT~elV~KDFA~E~De~kmr~AAh~Mv~~LAgsLAlVTckEPLr~si~~~Lr~~l~~~~~~~~~~e~ 1407 (2067)
                      ..|||||+.||++||+.|++||||+|.|+.++..||++||++|||+||+|||+|||++.|.++.|+...++......+-+
T Consensus      1067 ~aVVeks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae 1146 (2005)
T COG5103        1067 GAVVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMKLCSVLDFSAE 1146 (2005)
T ss_pred             HHHHHHhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998887666677888


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCCcCcccccccccCCCCccCCCCCCCCHhH
Q 000137         1408 AVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQ 1486 (2067)
Q Consensus      1408 ~i~~~~~dNldL~c~~IekaA~ekAi~eIde~l~~~~~~RRkhre~-~g~~f~D~~~~~~~~~~LPE~LrlkpgGl~~~Q 1486 (2067)
                      ++..++++|++.||.+||+|+++|++++|+..|+.++..||+||++ ++.||+|+++ +..+++||++|+++-||+||||
T Consensus      1147 ~vd~~~~eN~~va~~lIe~a~~~k~~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aa-a~~slnLps~L~ls~~~~Tpqq 1225 (2005)
T COG5103        1147 KVDKIAMENQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRKTTPNLPFVDPAA-ANLSLNLPSSLELSIGKATPQQ 1225 (2005)
T ss_pred             HHHHHHHhchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCccCccc-CccccCCCcccccccCCcCHHH
Confidence            8999999999999999999999999999999999999999999998 7999999997 4446889999999999999999


Q ss_pred             HHHHHhhhcCcCCccCCCCCcccccCccCCCCchhhhccccCCCCCCCCCCcCCCCCCCcccccCCccccCCCccccccc
Q 000137         1487 QRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAG 1566 (2067)
Q Consensus      1487 ~~VYEdF~r~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 1566 (2067)
                      +++||||.|+|-..-++.+...+..+..+.             +++.+         .     .-|..+...+  ...++
T Consensus      1226 f~lyE~fD~l~ls~i~~h~~~~~~n~~~Td-------------~adst---------d-----al~~nl~nt~--e~eAn 1276 (2005)
T COG5103        1226 FSLYEDFDRLSLSTIMGHIEKIAINAIDTD-------------SADST---------D-----ALNNNLNNTV--ENEAN 1276 (2005)
T ss_pred             hhhhhccccccccccccccchhhhhhhcCC-------------hhhhh---------h-----hhccccchhh--hhHHH
Confidence            999999999654222111111111000000             00000         0     0000000000  00000


Q ss_pred             ccccccccccccCCCcccccccccccccCChhhhhhcccCCCCCCCCCCCCCCCCCCCchhhhhcccccccccchhhhhH
Q 000137         1567 FLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALD 1646 (2067)
Q Consensus      1567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~le 1646 (2067)
                      +   ++.++...            .-. ++.   +..++          +...|...   +..+.         .+    
T Consensus      1277 Q---ta~~yq~n------------~L~-i~~---ql~Ql----------~~~~Py~~---~~~V~---------aD---- 1311 (2005)
T COG5103        1277 Q---TALEYQEN------------LLI-IKA---QLVQL----------SKKIPYSS---KKNVI---------AD---- 1311 (2005)
T ss_pred             H---HHHHHHHH------------hhh-hhh---HHHHh----------cccCCcch---hhcCc---------ch----
Confidence            0   00000000            000 000   00000          00001110   11111         00    


Q ss_pred             HHHHHHHHHHHHhhcCCcchhHHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHhHH
Q 000137         1647 KYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKL 1726 (2067)
Q Consensus      1647 ~~~~~~~~l~~l~~~~~~~~ei~~~i~~v~~~i~~~~~rde~al~~aQkvv~~L~~~~~~~l~~ev~~~~L~~L~~~~~~ 1726 (2067)
                      ..|-.   +.+.     . +++..++.+|...|.++   |+.++.++|.+++.|+..+.+++++||+.++||+||++|-+
T Consensus      1312 ~e~~~---lkE~-----~-NQ~~t~~~~Il~~Ia~s---d~~~l~c~q~c~~il~~~skSp~~~evls~~lEkic~~S~k 1379 (2005)
T COG5103        1312 EEHGL---LKEG-----K-NQFETVFRRILESIASS---DDKDLECIQLCRYILGHLSKSPSKEEVLSRCLEKICKISFK 1379 (2005)
T ss_pred             hhhhH---HHhh-----H-HHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHhHhHH
Confidence            00111   1111     1 35667777777777665   99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhccccccccCHHHHHHHHHhcCCChhHHHHHHHHHHhcCCChhHHHHHHHHHHHHhcCCchhh-hhhHHHH
Q 000137         1727 VVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV-ISELHNL 1805 (2067)
Q Consensus      1727 ~~kevt~wli~s~derK~Nv~vi~~Lir~~Li~~~e~D~~LAk~i~~~~n~~av~Fa~~Ll~~~l~~e~~~~-~sdf~~t 1805 (2067)
                      ++|+|.|||+|+.|.||||+|+|.+|||+|||+..|||.+|++.|.+.. ..++|||+.|++..+++|.++. ..||.+|
T Consensus      1380 t~k~V~~wl~ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~-gnvtdFai~Ll~~~V~~e~pi~~~~dFI~t 1458 (2005)
T COG5103        1380 TQKEVLGWLIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLAD-GNVTDFAIALLASLVTAEVPICTVYDFICT 1458 (2005)
T ss_pred             HhhhhheeeeecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhccccc-cchHHHHHHHHHHHhccCCceeeHHHHHHH
Confidence            9999999999999999999999999999999999999999999997654 3489999999999999997654 5999999


Q ss_pred             HHHHHHHHcCCCChhHHHHHHHHHhCcccccCCCCCCccccchhhhhhcccccccCcccCccCCCCCCCCCCCCCChHHH
Q 000137         1806 VDALAKLAAKPGSPESLQQLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQ 1885 (2067)
Q Consensus      1806 leaL~kl~~~~~~~e~l~~l~e~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~l~eq 1885 (2067)
                      +|.|+.-.    . +.+.+..+++-.            .+++         .+..|                ....+.||
T Consensus      1459 Le~la~s~----d-~~vk~f~~~~~~------------tm~~---------~v~kg----------------nKqq~ndq 1496 (2005)
T COG5103        1459 LEMLAGSS----D-PKVKDFFQKISN------------TMMH---------IVAKG----------------NKQQLNDQ 1496 (2005)
T ss_pred             HHHHhccC----C-hhHHHHHHHHHH------------hhhh---------ccccc----------------ccccccce
Confidence            98875321    1 333455554431            0000         00000                12346789


Q ss_pred             HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHHHhhhcccCCCCCCCcCccccccchh
Q 000137         1886 VSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLA 1965 (2067)
Q Consensus      1886 ~~~lF~EWv~l~~~~~~~~~~~~~Fv~qL~~~giLk~dd~~~~FfR~~~E~sV~~~~~~e~~~~g~~~~~~~~~~~~f~~ 1965 (2067)
                      +..+|.|||++..+...+|..-..|+.||+++|+++.+|++..|||+..|.+|..|.  |.+ |+         +.||..
T Consensus      1497 i~iVf~ewv~llrn~~~nD~v~~~F~~ql~e~g~~s~~~~~~~ffk~sle~~i~aF~--e~~-pt---------a~~y~~ 1564 (2005)
T COG5103        1497 IIIVFSEWVELLRNCRFNDTVPEMFLPQLMERGDYSASLDIRSFFKVSLEHFIRAFH--ERI-PT---------AYCYLK 1564 (2005)
T ss_pred             EEEeeHHHHHHHHhcccccccHHHHHHHHHHccCCCchHHHHHHHHhhHHHHHHHHh--hcC-Cc---------ccceee
Confidence            999999999999999999999999999999999999999999999999999999995  442 32         689999


Q ss_pred             hhHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhhHhhhcCCCCCchHHHHHHHHHhhccCCCCCCcchHHHH
Q 000137         1966 IDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQIL 2045 (2067)
Q Consensus      1966 IDA~akLIv~lvk~~~~~~~~~k~~lL~kiLsivv~vl~~dhe~~~~~FnqrPYfRlFs~LL~el~~~d~~l~~~~~qil 2045 (2067)
                      ||||+-||+.++++. +..+.++-.|++||++++++|++++|..+++.||+|||||+||++|+||-......++.-..+.
T Consensus      1565 IDal~sLi~n~l~~e-G~te~T~s~~~~kii~~i~~VFae~h~~~~e~~h~~~fFrLfS~il~e~~dv~~~d~s~fv~~~ 1643 (2005)
T COG5103        1565 IDALPSLIKNRLYEE-GSTEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILIETLDVIDEDTSCFVNNR 1643 (2005)
T ss_pred             ccchHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhhhhhccchhhhhhH
Confidence            999999999999995 5556678899999999999999999999999999999999999999999775544555666788


Q ss_pred             HHHHHHHhhcCCCCCCccccC
Q 000137         2046 SAFANAFHVLQPLKVPAFRLA 2066 (2067)
Q Consensus      2046 ~aFa~~l~~LQP~~~PGFaFA 2066 (2067)
                      +.|-++|.+|||.+||||+||
T Consensus      1644 Sv~y~~f~alqP~~fPgFtfa 1664 (2005)
T COG5103        1644 SVVYSIFEALQPSRFPGFTFA 1664 (2005)
T ss_pred             HHHHHHHHHcCcccCCchHHH
Confidence            999999999999999999997

>KOG1831 consensus Negative regulator of transcription [Transcription]	Back alignment and domain information

>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human	Back alignment and domain information

>KOG1831 consensus Negative regulator of transcription [Transcription]	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		2067
4gmj_A		229	Structure Of Human Not1 Mif4g Domain Co-Crystallize		4e-58
4gml_A		235	Crystal Structure Of Human Not1 Mif4g Domain Length		4e-58
4b89_A		249	Mif4g Domain Of The Yeast Not1 Length = 249		7e-37
4b8b_A		603	N-Terminal Domain Of The Yeast Not1 Length = 603		3e-24

>pdb|4GMJ|A Chain A, Structure Of Human Not1 Mif4g Domain Co-Crystallized With Caf1 Length = 229

Back alignment and structure

Iteration: 1

Score = 224 bits (571), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 104/214 (48%), Positives = 154/214 (71%), Gaps = 2/214 (0%) Query: 970 VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLD 1029 +Q+KI+FI NN+S N+ K +E E +KE++ PW +QY+VMKR SIEPNFH LY FLD Sbjct: 7 IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLD 66 Query: 1030 KVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARE 1089 + + N+ ++ TY N KVLL S+ ++ +RSLLKNLG WLG +T+ +N+ + + Sbjct: 67 TLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTD 126 Query: 1090 IDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPN 1147 +D KSL++EAY KG ++ V+PF +K+LE S+ ++PPNPWTMAI+ +LAE++ + Sbjct: 127 LDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHD 186 Query: 1148 LKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1181 LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R Sbjct: 187 LKLNLKFEIEVLCKNLALDINELKPGNLLKDKDR 220

PyMOL of 4gmj

>pdb|4GML|A Chain A, Crystal Structure Of Human Not1 Mif4g Domain Length = 235

Back alignment and structure

>pdb|4B89|A Chain A, Mif4g Domain Of The Yeast Not1 Length = 249

Back alignment and structure

>pdb|4B8B|A Chain A, N-Terminal Domain Of The Yeast Not1 Length = 603

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		2067
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 93.4 bits (231), Expect = 6e-19
 Identities = 109/668 (16%), Positives = 206/668 (30%), Gaps = 220/668 (32%)

Query: 5   SSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQ 64
           S    S    L  +L     + V +    F+E  +  +   L   M  +    T  + P 
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQK----FVEEVLRINYKFL---MSPIK---TEQRQPS 106

Query: 65  LESVVASVFKYIMDKP-NFSTVFSQ-SV----KITEINEQLLENLSDVLNLSLPERIGIG 118
           + + +   +    D+  N + VF++ +V       ++ + LLE L    N+ +   +G G
Sbjct: 107 MMTRM---YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSG 162

Query: 119 ---LALS--DSENLDALMCGKNF------------CMAQIERLCANPVPMNSAEQIQNII 161
              +AL    S  +   M  K F             +  +++L     P  ++       
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR------ 216

Query: 162 MFLQRSSDLSKHVDSLMQILS-LLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDD 220
                SS++   + S+   L  LL+SK +   +L  VL   + +A +    +L       
Sbjct: 217 --SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VL-LNVQNAKAWNAFNL------- 264

Query: 221 DFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLT--EITLSRILGAIART 278
                                           CK IL     LT     ++  L A   T
Sbjct: 265 -------------------------------SCK-IL-----LTTRFKQVTDFLSAATTT 287

Query: 279 HAGLEDNQNTFST------FTLALGCSTMSDLP-------PLSSWNVDVLVKAIKQLAPN 325
           H  L+ +  T +           L C    DLP       P     + ++ ++I+     
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTTNPRR---LSIIAESIRD-GLA 342

Query: 326 T--NWIRV------------VENLDYEGFYIPTE-----EAFSFFM-SVYKYACQEPFPL 365
           T  NW  V            +  L+      P E     +  S F  S          P 
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE------PAEYRKMFDRLSVFPPSA-------HIPT 389

Query: 366 HAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLC 425
             +   +W +                +V    +   +         L ++          
Sbjct: 390 ILLS-LIWFDVIKS------------DVMVVVNKLHKY-------SL-VEKQPKESTISI 428

Query: 426 LDL-LDVLCQLSEMG--HASFARSMLE-Y--PLKQCPEMLLLGMA------HINTAYNLI 473
             + L++  +L      H    RS+++ Y  P     + L+          HI   ++L 
Sbjct: 429 PSIYLELKVKLENEYALH----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHLK 482

Query: 474 QYEVS--FAVFPMI----------IKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCT 521
             E      +F M+          I+   +       W+     +L      +  +P   
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTA------WNA-SGSILNTLQQLKFYKP--- 532

Query: 522 IRILEICQEL-KILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEEC 580
             I +   +  ++++++L+     F  ++       +  DL   L I L    +  FEE 
Sbjct: 533 -YICDNDPKYERLVNAILD-----FLPKIEENLICSKYTDL---LRIALMAEDEAIFEEA 583

Query: 581 LKFVKEVQ 588
               K+VQ
Sbjct: 584 H---KQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		2067
4gmj_A		229	CCR4-NOT transcription complex subunit 1; mRNA dec	100.0
4b89_A		249	General negative regulator of transcription subun;	100.0
4b8b_A		603	General negative regulator of transcription subun;	100.0
3rk6_A		234	Polyadenylate-binding protein-interacting protein;	80.06

>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A	Back alignment and structure

Probab=100.00  E-value=3.3e-81  Score=701.67  Aligned_cols=218  Identities=48%  Similarity=0.855  Sum_probs=214.8

Q ss_pred             CChhhhhhHhhhhhccChhhHHHHHHHHHHHhhhcChhhhhHHHHhhhcccCCchhHHHHHHHHHhCChhHHHHHHHHHH
Q 000137          966 PASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATY 1045 (2067)
Q Consensus       966 P~e~v~dKI~FiiNNls~~Nl~~K~~El~~~L~~~y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~~~L~~~il~~Ty 1045 (2067)
                      ++|+|+|||+|||||+|++|+++|++|+|++|+++||+|||+|||++|||+|||||+||++|+++++++.|+++|+++||
T Consensus         3 ~de~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T~   82 (229)
T 4gmj_A            3 LEENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETY   82 (229)
T ss_dssp             SCHHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CcHHhhhhheeehhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcchhcccChHHHHHHHHhhHhHhhhhhhcCcccccCCCChhHHHHHHHhcCc--eeEEechhhhhcccccCCc
Q 000137         1046 ENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSL 1123 (2067)
Q Consensus      1046 ~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~--L~~VIPFV~KVLe~~~~S~ 1123 (2067)
                      ++|++||++++++.+++||++|||||+|||+|||||||||+||+||+|+||+|||++|.  |++|||||||||++|++|+
T Consensus        83 ~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~  162 (229)
T 4gmj_A           83 RNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSV  162 (229)
T ss_dssp             HHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCT
T ss_pred             HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999995  9999999999999999999


Q ss_pred             cccCCCccHHHHHHHHHHHhcCCccchhhHHHHHHHHhhcCCCccccccccccccchhhh
Q 000137         1124 AYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREI 1183 (2067)
Q Consensus      1124 vFkPPNPWtm~IL~lL~Ely~~~~LKlnLKFEIEVL~K~L~ld~~di~ps~~L~~r~~~~ 1183 (2067)
                      |||||||||||||++|+|||++|+||+|||||||||||+|++|++||+|+++|++|++..
T Consensus       163 iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~~~i~ps~~l~~~~~~~  222 (229)
T 4gmj_A          163 VFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLK  222 (229)
T ss_dssp             TTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCGGGSCCCSGGGCSTTGG
T ss_pred             cCCCCChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHcCCChhhcCchhhhhccchhc
Confidence            999999999999999999999999999999999999999999999999999999988753

PyMOL of 4gmj

>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B	Back alignment and structure

>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}	Back alignment and structure

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		2067
d1uw4b_		248	Regulator of nonsense transcripts 2, UPF2 {Human (	80.03

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Regulator of nonsense transcripts 2, UPF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.03  E-value=0.91  Score=49.90  Aligned_cols=189  Identities=12%  Similarity=0.080  Sum_probs=123.2

Q ss_pred             hhhhhhHhhhhhccChhhHHHHHHHHHHHhh--hcChhhhhHHHHhhhcccCCchhHHHHHHHHHhCC--hhHHHHHHHH
Q 000137          968 SEVQDKISFIINNISALNVEAKAKEFTEILK--EQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNS--KALNREIVQA 1043 (2067)
Q Consensus       968 e~v~dKI~FiiNNls~~Nl~~K~~El~~~L~--~~y~~WFA~YLV~kRas~EpN~H~LY~~fld~l~~--~~L~~~il~~ 1043 (2067)
                      ++.--|+  |+|.||+.|++.=+++++++=-  ++-..++...++. -+..+++|=.+|..++..|..  +.+-..++..
T Consensus         5 ~~flr~l--i~n~Ls~~n~~~i~~~i~kl~~~n~e~~~~li~~i~~-~~~~~~~~i~~yA~l~a~L~~~~~~f~~~~id~   81 (248)
T d1uw4b_           5 QEYVRKL--LYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMIN-IWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDG   81 (248)
T ss_dssp             HHHHHHH--HHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHC-GGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHH--HHhhCCHhHHHHHHHHHHHCCCCCHHHHHHHHHHHhh-hhcCchhHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            4444555  6899999999988888877632  4555788886665 599999999999999999964  5677778888


Q ss_pred             HHHHHHHHhcchhcccChHHHHHHHHhhHhHhhhhhhcCcccccCCCChhHHHHHHHhcCce---------eEEechhhh
Q 000137         1044 TYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLM---------IAVIPFTSK 1114 (2067)
Q Consensus      1044 Ty~~i~~LL~se~~~~~s~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LL~eaY~~g~L---------~~VIPFV~K 1114 (2067)
                      +.+.++.-+..++.    .++...-+.-.++|-+..-+=-+...-.=-+..||..+++.+.-         ..-|=.+|+
T Consensus        82 l~e~f~~~~e~~~~----~~~~r~~~~v~figeLy~~~~v~~~~i~~~l~~Ll~~~~~~~~~~~~~d~~~d~~rIe~l~~  157 (248)
T d1uw4b_          82 VLEDIRLGMEVNQP----KFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCT  157 (248)
T ss_dssp             HHHHHHHHHHHCCG----GGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHhcCCCcccccccCCCCcchhHHHHHHH
Confidence            88887777654322    23333334458999988666555444333455666666665420         011557999


Q ss_pred             hcccccCCccccCCCccHHHHHH-HH-------------HHHhcCCccchhhHHHHHHHHhhcCCCc
Q 000137         1115 ILEPCQSSLAYQPPNPWTMAILG-LL-------------AEIYSMPNLKMNLKFDIEVLFKNLGVDM 1167 (2067)
Q Consensus      1115 VLe~~~~S~vFkPPNPWtm~IL~-lL-------------~Ely~~~~LKlnLKFEIEVL~K~L~ld~ 1167 (2067)
                      +|+.|..+-    .+++...-|. .+             .++-+...+-.-++|-|+-|+.-.+=++
T Consensus       158 lL~t~G~~l----~~~~~~~~l~~~~~~fq~y~~~~~~~~~~~~~~~lp~ri~f~i~dll~lr~~~w  220 (248)
T d1uw4b_         158 ILDTCGQYF----DRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKI  220 (248)
T ss_dssp             HHHHHGGGC----SSHHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhHHh----cCccchhhHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhCCC
Confidence            999998773    2333322221 11             1111234567789999999998776444

PyMOL of d1uw4b_