Citrus Sinensis ID: 000143
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2058 | 2.2.26 [Sep-21-2011] | |||||||
| Q92616 | 2671 | Translational activator G | yes | no | 0.972 | 0.749 | 0.341 | 0.0 | |
| Q54WR2 | 2667 | Translational activator g | yes | no | 0.848 | 0.654 | 0.327 | 0.0 | |
| Q10105 | 2670 | Translational activator g | yes | no | 0.625 | 0.482 | 0.340 | 0.0 | |
| P33892 | 2672 | Translational activator G | yes | no | 0.493 | 0.379 | 0.382 | 0.0 | |
| O94489 | 1047 | Elongation factor 3 OS=Sc | no | no | 0.129 | 0.254 | 0.340 | 4e-36 | |
| O14134 | 1057 | mRNA export factor elf1 O | no | no | 0.132 | 0.258 | 0.316 | 3e-32 | |
| P29551 | 1042 | Elongation factor 3 OS=Pn | N/A | no | 0.133 | 0.263 | 0.304 | 4e-32 | |
| P25997 | 1050 | Elongation factor 3 OS=Ca | N/A | no | 0.150 | 0.294 | 0.282 | 2e-27 | |
| P53978 | 1044 | Elongation factor 3B OS=S | no | no | 0.115 | 0.227 | 0.313 | 1e-26 | |
| P16521 | 1044 | Elongation factor 3A OS=S | no | no | 0.115 | 0.227 | 0.296 | 2e-26 |
| >sp|Q92616|GCN1L_HUMAN Translational activator GCN1 OS=Homo sapiens GN=GCN1L1 PE=1 SV=6 | Back alignment and function desciption |
|---|
Score = 1077 bits (2785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 731/2139 (34%), Positives = 1146/2139 (53%), Gaps = 137/2139 (6%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S+TL A V+T+S K R+ I ++ + ++ L + T Y D S
Sbjct: 8 SETLKRFAGKVTTASVKERREIL-SELGKCVAGKDLPEGAVKGLCKLFCLTLHRYRDAAS 66
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVG---------CYRLLKWSCLL 117
R+A+ I++ L E T A L+ +++ S S G L W+CLL
Sbjct: 67 RRALQAAIQQ-LAEAQPEAT-AKNLLHSLQS-SGIGSKAGVPSKSSGSAALLALTWTCLL 123
Query: 118 LSKSQFATVSK---NALCRVAAAQASLLHIVMQRSFRER-RACKQTFFHLFSQSPDIYKT 173
+ + F + +K + ++ Q LL V+ S + + L+ ++P + +
Sbjct: 124 V-RIVFPSRAKRQGDIWNKLVEVQCLLLLEVLGGSHKHAVDGAVKKLTKLWKENPGLVEQ 182
Query: 174 YTDELKDARIPYKHSPELICLLLEFLS--KSPSLFEKCRPIFLDIYVKAVLNAKEKPMKG 231
Y + P ++ ++ LL++F + K + + + LD Y+K +L +K KP K
Sbjct: 183 YLSAILSLE-PNQNYAGMLGLLVQFCTSHKEMDVVSQHKSALLDFYMKNILMSKVKPPKY 241
Query: 232 LSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILS 291
L +S PL ++S +F+ ++LP K L R+PE ++E+I LL SV LDLS+YA +I+
Sbjct: 242 LLDSCAPLLRYLSHSEFKDLILPTIQKSLLRSPENVIETISSLLASVTLDLSQYAMDIVK 301
Query: 292 VVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIG 351
+ ++ A+ + L+ + S+ A+E++ + A++GGSEG+L Q++
Sbjct: 302 GLAGHLKSNSPRLMDEAVLALRNLARQCSDSSAMESLTKHLFAILGGSEGKLTVVAQKMS 361
Query: 352 MVNALQELS-NATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADII 410
+++ + +S + G L+ + + + + E +E + +S +A W R +
Sbjct: 362 VLSGIGSVSHHVVSGPSSQVLNGIVAELFIPFLQQEVHEGTLVHAVSVLALWCNRFTMEV 421
Query: 411 QSDLLSFFASGLKEK---EALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKA 467
L +F K A+R +L+C+ + D +LQ LL LIQ V+ +++
Sbjct: 422 PKKLTEWFKKAFSLKTSTSAVRHAYLQCM-LASYRGDTLLQALDLLPLLIQTVEKAASQS 480
Query: 468 VQR---LDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDC 524
Q +G+ A L++ K++ AD +AE ++ W L+ + + + ++ +D
Sbjct: 481 TQVPTITEGVAAALLLLKLSVADSQAEAKLS--SFWQLIVDEKKQVFTSEKFLVMASEDA 538
Query: 525 MACV-ELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVP- 582
+ V L L ++H HR L V+ + ++ +W +R+ A RK+++S+
Sbjct: 539 LCTVLHLTERLFLDHPHR-LTGNKVQQYHRALVAVLLSRTWHVRRQAQQTVRKLLSSLGG 597
Query: 583 -HLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALA 641
L+ LL E LS + + +D + ++ ++P +Q + L VI+ V
Sbjct: 598 FKLAHGLLEELKTVLSSHKVLPLEALVTDAGEVTEAGKAYVPPRVLQ-EALCVISGVPGL 656
Query: 642 RG-----PSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCK 696
+G + ++ SHHPS+V + +W L L + + ++ + +
Sbjct: 657 KGDVTDTEQLAQEMLIISHHPSLVAV--QSGLWPAL---LARMKIDPEAFITRHLDQI-- 709
Query: 697 VLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQ 756
+ M+ Q+++N++ +L ++P + ++ +
Sbjct: 710 -----IPRMTTQSPLNQSSMNAMGSLSVLSPDRVLPQLISTITASVQNPALRLVTREEFA 764
Query: 757 VFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREV 816
+ TP G L Y I+ + +QD + K S ++
Sbjct: 765 IMQTPAGEL------YDKSIIQSA-------------QQDSIKKANMKRENKAYSFKEQI 805
Query: 817 SGAGKKDIGKSTKKADKGKTAKEEARELL---LNEEASIREKVQGVQRNLSLMLSALGEM 873
K+ K K + + +E+L L+ EA +R ++Q + L L L +
Sbjct: 806 IELELKEEIKKKKGIKEEVQLTSKQKEMLQAQLDREAQVRRRLQELDGELEAALGLLDII 865
Query: 874 AIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATA--- 930
NP +P LV PLL+SP+ + L+ C MP AL +
Sbjct: 866 LAKNPSGLTQYIPVLVDSFLPLLKSPLAAPRIKNPFLSLAACV-MPSRLKALGTLVSHVT 924
Query: 931 LRLI----VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFV 986
LRL+ V ++ +L +V A + + R+ G + PL +F+ V
Sbjct: 925 LRLLKPECVLDKSWCQEELSVAVKRAVMLLHTHTITSRVGKG---EPGAAPLSAPAFSLV 981
Query: 987 FPIIERILLS-PKRTGLHDD----VLQMLYKHMD----PLLP-----------LPRLRMI 1026
FP ++ +L P + ++ +LQ+L P P LPR+ M+
Sbjct: 982 FPFLKMVLTEMPHHSEEEEEWMAQILQILTVQAQLRASPNTPPGRVDENGPELLPRVAML 1041
Query: 1027 SVLYHVLGV-VPSYQAAIGSALNELCLG---------LQPNEVASALHGVYTKDVHVRMA 1076
+L V+G P Q L LC + EV L + + VR
Sbjct: 1042 RLLTWVIGTGSPRLQVLASDTLTTLCASSSGDDGCAFAEQEEVDVLLCALQSPCASVRET 1101
Query: 1077 CLNAV----KCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY 1132
L + +PA T + + LW+ D E+ + + AE +W G D D
Sbjct: 1102 VLRGLMELHMVLPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSMMGLDLQPDL 1160
Query: 1133 -SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDA-- 1189
S L + + VR A AEAL+ A+ Y + L +Y + +DA
Sbjct: 1161 CSLLIDDVIYHEAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLDALG 1220
Query: 1190 ---------GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAG 1240
W R G+ALAL+ + L + + + F + AL D + DVR ML+A
Sbjct: 1221 RVISESPPDQWEARCGLALALNKLSQYLDSSQVKPLFQFFVPDALNDRHPDVRKCMLDAA 1280
Query: 1241 IMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 1300
+ ++ HG++NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV
Sbjct: 1281 LATLNTHGKENVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKP 1339
Query: 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360
+V KL+ L+TPS+ VQ +V+SCL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+
Sbjct: 1340 IVAKLIAALSTPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAY 1399
Query: 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420
GLAG+VKG GI SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+
Sbjct: 1400 GLAGLVKGLGILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVH 1459
Query: 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
+LP LL+ F D VREAA+ A+A+MS LSA GVKLVLPSLL LE+++WRTK SV+
Sbjct: 1460 VLPHLLLCFGDGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVE 1519
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI ++ P
Sbjct: 1520 LLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAP 1579
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600
LL LTDP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+
Sbjct: 1580 VLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQII 1639
Query: 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660
GNM SL T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+
Sbjct: 1640 GNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLP 1698
Query: 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLT 1718
WL++ L + S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+
Sbjct: 1699 WLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIM 1758
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
+F YLP + G +F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP
Sbjct: 1759 MFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLP 1818
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838
+E G+F+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG
Sbjct: 1819 QLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALG 1878
Query: 1839 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS 1898
++RN VLA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ LAS+
Sbjct: 1879 VERRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTC 1938
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
+++R +A R LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M S +
Sbjct: 1939 ADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDA 1998
Query: 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTS 2018
+L F + L+PT R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S
Sbjct: 1999 VLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVS 2058
Query: 2019 DTALDGLKQILSVRTTAVLPHILPKLVHLPLSYVSLYLL 2057
+ ALDGLKQ++++++ VLP+++PKL P++ L L
Sbjct: 2059 EFALDGLKQVMAIKSRVVLPYLVPKLTTPPVNTRVLAFL 2097
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Acts as a translation activator that mediates translational control and perform an EF3-related function on the ribosome by regulating GCN2 protein kinase (EIF2AK1-4) activity. Homo sapiens (taxid: 9606) |
| >sp|Q54WR2|GCN1L_DICDI Translational activator gcn1 OS=Dictyostelium discoideum GN=gcn1l1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 632/1927 (32%), Positives = 1011/1927 (52%), Gaps = 181/1927 (9%)
Query: 213 FLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIG 272
L+IY K V+ + ++ ++ + F LF ++ ED QSI+LP + +KR+ + + + +
Sbjct: 260 LLNIYNKTVIGSSQQKIEE-HKFFKRLFNQLTNEDLQSIILPPLSRHIKRDQDQVFKILI 318
Query: 273 ILLKSVNLDLS---------KYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPD 323
+L++++ D + +L V+ +E RK T + E+S +
Sbjct: 319 FILENLSSDFNVIDLSSLLKSMLLPMLLPVIQSTISIEENRKLLKKT-FTLIIERSKDTK 377
Query: 324 ALEAM----FYAIKAVIGGSEGRLAFPYQRIGMV---NALQELSNATE-----GKYLNSL 371
+ +M +V G +L ++ N ++ LS TE + L S+
Sbjct: 378 LISSMITDDLLKTLSVAGNPSQKLIIISIISSIISTKNFIERLSLTTEKLQLSKQILQSI 437
Query: 372 SLTICKFLLSCYKDEGNEEVKL--AILSAVASWAKRSADIIQSDLLSFFASGLKEKEALR 429
S+ + K L KD N+ KL ++ V +++ II + LK + +
Sbjct: 438 SIYLEKEL---NKDNRNKGFKLLGKVMKMVEELPEQTIKII--------TNSLKNDDDII 486
Query: 430 RGHLRCLRVICTNTDAVLQVSSLLGP--------LIQLVKTGFTKAVQ------------ 469
+G + +L +S LGP +IQ++ GFT+ +
Sbjct: 487 KGQV------------ILSLSKSLGPEANGTNKKVIQII-NGFTETINTILKNVKNAKTC 533
Query: 470 -------RLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVD 522
L + + + + DI + + K + +L + L I + S
Sbjct: 534 DPSTTTASLHYMLSLITTTGVPKNDIFTKYSTDKTTISNLYASTS-FLHTDGFIQRTSKK 592
Query: 523 DCMACVELLVVLLVEHSHRVLETFSVKL-----LLQLVLLFTCHPSWDIRKMAHDATRKI 577
D ++LL+ L + RV S+KL L VL H W + K + R I
Sbjct: 593 D--HAIDLLLTLFL----RVKSFPSIKLNDKSPLYSSVLNCLLHSQWSVSKHSAIKIRSI 646
Query: 578 IT-------SVPHLSEALLLEFSNFL---SLVGEKIIISKTSDTDDFVDSQVPFLPSVEV 627
++ P LS LL+EFS L SL+ II+ ++ + + + +
Sbjct: 647 LSRNDSVDIDYPLLSNQLLIEFSTILFDDSLIITPQIINSNVESTTTTTTTISNKKNYLI 706
Query: 628 QVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIV 687
+++L ++ P S + C +HP I + W+R+ ++ +V +
Sbjct: 707 AFRSILS-KNIKSELYPMLS---LIC-YHPFI------NYNWKRVSSLIQN---DVNTTL 752
Query: 688 SADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVH 747
S++ + K + N QQA +++ LM+ + + E+ +K + +
Sbjct: 753 SSNAIEISKYIFEKGLNQKKNKSYQQAFQQAINGLMNY---NVPLLNEELVKLMVKALSY 809
Query: 748 D---SLSENDIQVFYT-PEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
+ ++++ +++T P + +Q ++V ++N ++ K + EEQ
Sbjct: 810 EPVLAITQQQWSIYHTLPTELFVEKQ----EQLVESRNDRKVKP--KTAEEQ-------- 855
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEA-RELLLNEEASIREKVQGVQRN 862
+ E + + + + KK G+ K+E R+ L +A IR+ VQ V
Sbjct: 856 ----RDEESRKRI---------EEKKKIQSGELEKQEKERQKQLAAQAVIRKDVQDVIDR 902
Query: 863 LSLMLSALGEMA--IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPL 920
L L + MA +NP F + ++ + L++ I + KL C
Sbjct: 903 LHLAMDTCQTMAKSSSNPQFVGEFMSPIIVALLQLMKHEITNHQFTQVFEKLICCVP--- 959
Query: 921 CNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPV 980
+ LD + A I P++ E + L ++I+ + S L
Sbjct: 960 SRFKLDRSFARHYIYIINNIYYR---PTLSEI----QILGFIQKILTHIRESIAKEALSG 1012
Query: 981 DSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQ 1040
+F + +PII+ L + + + ++++ KH PR MIS L V+ +
Sbjct: 1013 FAFNYFWPIIKNGLETTISFTIQEISMEIIQKHTAQGQAYPRGSMISSLIIVVSTNSRLE 1072
Query: 1041 AAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVST 1100
A + + +L G++ +++ + G+ +K V VR CL A++ IP++ + S +
Sbjct: 1073 AQARNTIFQLIEGVETSDIGELMEGIISKHVQVRSICLQAIEKIPSIYSPSFVWEDKYIG 1132
Query: 1101 SLWIAVHDPEKSVAEA-AEDIW--DRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATA 1157
SLW A D + A AE IW D+ K LS S +NV + A A
Sbjct: 1133 SLWFARFDNHDANTSALAEKIWLATNQPTQLPEDF---MKLLSDSTFNVNSETRKINALA 1189
Query: 1158 LDE----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD-VLRTKD 1212
+ E + I + LF +Y ++ R +A AL + ++ +
Sbjct: 1190 IKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFRISVATALSGLGNAIVEPEV 1249
Query: 1213 LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEK 1272
L + T +I R L D +V ++ G+ II++ G L FE +L + + +
Sbjct: 1250 LKSLFTKIIERGLFDPKEEVVQEFVSTGMSIINQQGVQFSGELLATFEAFLARPDNGTGE 1309
Query: 1273 YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ 1332
D +R VV++ GALAKH+ +PKV V+DKL+D L+ PSE+VQ +S C++ L+ S +
Sbjct: 1310 EDSIRANVVVYMGALAKHMDASNPKVSIVIDKLVDALSIPSESVQVGISKCIAQLIPSFK 1369
Query: 1333 DEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRN 1391
+ L+ LL++L S Y +RRGAAFGLAG VKG GI SLK Y I TL+ + D+
Sbjct: 1370 KQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKNYSILDTLQSYIEDKK 1429
Query: 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451
R+GAL AFECLC +GR+FEPY+I +LP LLV F D V VR+A A+A+MSQL
Sbjct: 1430 HPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEVRDATADTAKAIMSQL 1489
Query: 1452 SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511
S GVK+VLP+LLK L+D++WRTK+ S++LLGAMA+CAP+QLS CLP IVPKLT VL DT
Sbjct: 1490 SGHGVKIVLPALLKALDDRSWRTKEGSIELLGAMAFCAPKQLSSCLPTIVPKLTYVLNDT 1549
Query: 1512 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA 1571
H KVQ A + AL +GSVI+NPEI VP LL DP H+K L+ LL T +V+T+D
Sbjct: 1550 HTKVQEAAKEALSHIGSVIRNPEIQIHVPLLLQTYDDPEIHSKELLENLLSTNYVHTIDP 1609
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP 1631
SL+LL+PI+ R L+ERS+E KK + QIVGN+CSL TEPKD++PY+ +L+P +K VL+DP
Sbjct: 1610 ASLSLLLPILERTLKERSSELKKMSCQIVGNLCSL-TEPKDLVPYLNILMPVMKTVLLDP 1668
Query: 1632 IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691
IPEVR++ ARA+G L+RGMGEENF L+ WLL+ +KSD VERSGAAQGLSEVLA+L
Sbjct: 1669 IPEVRAICARALGLLVRGMGEENFSTLIPWLLETVKSDQGAVERSGAAQGLSEVLASLDI 1728
Query: 1692 VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
F ++ +++ + R VR+G L++F + P SLG F YL +VLP +L GLAD+++
Sbjct: 1729 SRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLPQVLKGLADDSD 1788
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
VR+ + G +V +A T + +++PA+E +F++NWRIR S V+L GDLLFK+AGT+
Sbjct: 1789 PVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLSCVQLFGDLLFKLAGTTA 1848
Query: 1812 KALLEGGS-----DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866
+ + S DD+ + G I ++LG+++ +L++LYM+R D + SVRQ L
Sbjct: 1849 QEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFDNNSSVRQKVLL 1908
Query: 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP 1926
+WK IV+NTPKTL+EI+P L+ +ISS+ S++ E+RQ++ + LG++V KL +R+LP I+P
Sbjct: 1909 IWKYIVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSKLSDRILPEILP 1968
Query: 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAG 1986
IL RGL+ RQGVCIGLSEV++SA K+QLL ++ ++ I ALCD +++VRE+A
Sbjct: 1969 ILERGLRSELEETRQGVCIGLSEVISSA-KTQLLPYLSSVVTCITKALCDPLIDVREAAA 2027
Query: 1987 LAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD---TALDGLKQILSVRTTAVLPHILPK 2043
AF L+ + G +A +EI+P L+ L++ D ALDGL+Q++ VR++ VLP ++PK
Sbjct: 2028 KAFDHLYHTFGSKASNEILPQLIQLLDNSNNKDLAGYALDGLRQVILVRSSIVLPVLIPK 2087
Query: 2044 LVHLPLS 2050
L+ P+S
Sbjct: 2088 LLSRPIS 2094
|
Acts as a translation activator that mediates translational control and perform an EF3-related function on the ribosome by regulating gcn2 kinase activity. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q10105|GCN1_SCHPO Translational activator gcn1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcn1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 470/1381 (34%), Positives = 779/1381 (56%), Gaps = 93/1381 (6%)
Query: 711 EQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQG 770
++ AAI S+S ++ + P+++ F ++ S+S D++++ TPEG+L
Sbjct: 743 KETAAIASISMIVFVAPEESIPLFVNVFRNQLLHLNISSVSSTDLEIWKTPEGVLWDN-- 800
Query: 771 VYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKK 830
++ K++K+ + YE + V + SAK+ + K
Sbjct: 801 -----VLEKKSSKKLDKNTKDYETKRWEAEVRAKQSAKKPA------------------K 837
Query: 831 ADKGKTAKEEARELLLNEEASIREKVQ----GVQRNLSLMLSALGEMAIANPVFAHSQLP 886
K + A +A+ L+ EA IR +V ++R L ++ S LGE P
Sbjct: 838 LSKDQQALVDAQ---LDAEAKIRSRVNLIALSLERGLGIIRS-LGEAVQLAPALWVEDAI 893
Query: 887 SLVKFVDPLLQS-PIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDL 945
++ F + L S P + ++AY+ + + + +++L I+ V+S
Sbjct: 894 DVLLFHNVLKYSEPFLKNLAYDTFLLTLKASGFSERLGDRSYSSSLASILAHTFSVNSS- 952
Query: 946 IPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDD 1005
++ E K+ I+ L + + F +FP++ + + + D+
Sbjct: 953 -ENIKELTKS---------ILYKLRFAIEQNYFEPQMFACIFPLLYDLTFNITNSDEEDE 1002
Query: 1006 V-LQMLYKHMDPLLPLP-------RLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPN 1057
LQ+L + L R ++I L H+L + P+ ++L LC GL
Sbjct: 1003 AELQLLVTEILEFQALYSASLRRMRSKLIKSLLHLLEIAPTQYQENKNSLLSLCEGLHST 1062
Query: 1058 EVASALHGVYTKDVH----VRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
L+ + + H +R A L A++ E +++ ++D ++
Sbjct: 1063 YTDEELNLLLSNLFHPESSIRSAVLQALQAFDL-------SRFEFIKEIFLELYDDNETN 1115
Query: 1114 AEAAEDIWDRYGYDFG-TDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTL 1172
A A I + G D T + L + + ++ ++L LDE+ + Q L
Sbjct: 1116 ASIAHQISTQNGLDATETSFFELQIFFTQDSDYLQQIIGKSLIDLLDEFEELGQFIPKEL 1175
Query: 1173 FSLY----------------IRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVI 1216
Y I+ +G D G + R+ +A++ + L + L
Sbjct: 1176 MRTYRENALPSAPEYDEYGIIKKETIGRD---LGRIARESVAVSFFHISKYLSSNLLLPF 1232
Query: 1217 MTFLISRALA-------DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269
+ FL++ + A D + V +ML AG + I + G V L +FE LN +
Sbjct: 1233 LEFLLTASEAEAQIPVTDASQKVSSKMLEAGKLAIFQSGAHQVEALMELFEQKLNVDSLP 1292
Query: 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ D +RE V+ G +A+HL +DP++ V+D LL VL+TPSE+VQ AV+ CL PL++
Sbjct: 1293 TDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLSTPSESVQLAVAVCLPPLVK 1352
Query: 1330 SMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
++ L ++LM S +++GAA+GLAG+VKG+GI + + + I +L E +++
Sbjct: 1353 KSLGKSKEYYELLSNKLMNSTSLADQKGAAYGLAGLVKGYGIKAFQDFNILDSLSELISN 1412
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
R +A R+ AL A E LG FEPY+ +LPLLL +F D VREA A + +MS
Sbjct: 1413 RQNATHRQVALFAVEAFSRILGIYFEPYLPDLLPLLLTSFGDNANEVREATMDAVKQIMS 1472
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509
QLSA GVKL+LP+LL GL + WR+K++SV++LG M+Y AP+QLS LP I+PKL+EVLT
Sbjct: 1473 QLSAFGVKLLLPTLLDGLNEYNWRSKKASVEILGLMSYMAPKQLSVFLPTIIPKLSEVLT 1532
Query: 1510 DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV 1569
D+H +V++ +L + G VI NPEI +LVPTLL L+D +T +L+ LL+T+FV+ +
Sbjct: 1533 DSHSQVRNTANKSLLRFGDVISNPEIQTLVPTLLKALSDCTRYTDDALEALLKTSFVHYL 1592
Query: 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629
D PSLAL++PI+ GLRER+A TK+++A+I G M SL TEP+++ Y+ L+P +++VL+
Sbjct: 1593 DPPSLALVIPILKYGLRERNAGTKRQSAKIFGLMASL-TEPENLAVYLESLMPRLREVLI 1651
Query: 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
DP+P+ R+ AA+A+GSLI +GE+ FP L+ L + L+S+ S V+R GAAQGLSE+LA L
Sbjct: 1652 DPVPDTRATAAKALGSLIEKLGEKKFPTLIPELFNVLRSECSEVDRQGAAQGLSEILAGL 1711
Query: 1690 GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE 1749
G E +LP+I++N S +R+ +++L YLP + G +FQ YL + +P IL GLAD+
Sbjct: 1712 GLARLEDVLPEILKNTSSPVPHIRESFISLLIYLPATFGSRFQPYLARAIPPILSGLADD 1771
Query: 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809
+E V+ A+L A ++V +YAT S+ LLLP +E G+F++ WRIR SSV+L+GDL+FK+AG
Sbjct: 1772 SELVQTASLRAAKMIVNNYATKSVDLLLPELEKGLFDNAWRIRLSSVQLVGDLVFKLAGI 1831
Query: 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK 1869
+ KAL E ++EG ++ +A+++++G+++ + +L+ LY+VR D++ VR A+ +WK
Sbjct: 1832 NRKALQE-DEEEEGTHSDVSRKALLDIIGQERHDRILSTLYIVRQDIAAVVRTPAIQIWK 1890
Query: 1870 TIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILS 1929
IV NTP+T++EI+P L + ++S+L SSS++RR + ++LG+L++K G VLP ++P+L
Sbjct: 1891 AIVVNTPRTVREILPTLTSIIVSNLNSSSNDRRTMCVKSLGDLLKKAGFDVLPQLLPVLK 1950
Query: 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989
+GL+ ++ R GVCI L E++ SA QL + D+ + +R AL D LEVRE+A AF
Sbjct: 1951 QGLESANSGDRIGVCIALEELINSATPEQLEIYSDDFVYAVRRALMDGDLEVRETAAEAF 2010
Query: 1990 STLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL 2049
+L G +A+D+++P LL LE + S+ AL L++I+S R++ + P ++P L+ P+
Sbjct: 2011 DSLQSILGDRAVDDVLPQLLKLLESENQSEQALSALREIISRRSSTIFPVLIPTLIKKPV 2070
Query: 2050 S 2050
S
Sbjct: 2071 S 2071
|
Acts as a translation activator that mediates translational control by regulating gcn2 kinase activity. Translational activator of gcn4. May be involved in sensing charged tRNA and stimulating the kinase activity of gcn2 in amino acid-starved cells. Required for the phosphorylation of eIF-2-alpha by the protein kinase gcn2. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P33892|GCN1_YEAST Translational activator GCN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/1065 (38%), Positives = 621/1065 (58%), Gaps = 50/1065 (4%)
Query: 1015 DPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELC--LGLQPNE--VASALHGVYTKD 1070
DP +PR+ ++ VL +L +PS N LC + + PN+ + L + + +
Sbjct: 991 DP--SIPRISIVEVLLSLL-SLPSKAKIAKDCFNALCQSISVAPNQEDLDMILSNLLSPN 1047
Query: 1071 VHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGT 1130
VR L + + L ++ S ++I D + S E A+ IW+ +
Sbjct: 1048 QFVRSTILETLD-----NEFELEPFMKYSPEVFICRFDSDPSNREIADFIWEFNKFVVND 1102
Query: 1131 DY-SGLFKALSHSNYNVRLAAAEALA----TALDEYPDSIQGSLSTLFSLY--------- 1176
+ LF + + +RL AA A A + +S + L+ L + Y
Sbjct: 1103 ELLKSLFPLFNQDDSGLRLFAANAYAFGAVSLFTSEENSSKDYLNDLLNFYKEKAKPLEP 1162
Query: 1177 -IRDIGL---GGDNVDAGWLGRQGIALALHSAADVLRTKDLPV--IMTFLISRA-LADTN 1229
+ GL W GR +A+ L A +D V I+ FL+ L D
Sbjct: 1163 ILDQFGLVLVSASEQKDPWQGRSTVAITLKIMAKAFSAEDDTVVNIIKFLVDDGGLVDRE 1222
Query: 1230 ADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 1289
VR M AG+ +I HG N L PIFE L+ ++E V+I G LA+
Sbjct: 1223 PIVRQEMKEAGVELITLHGSQNSKDLIPIFEEALSSSTDSA-----LKENVIILYGTLAR 1277
Query: 1290 HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM----QSMQDEAPTLVSRLLDQ 1345
HL + D ++H ++++LL L+TPS +Q+AVS+C++PL+ Q + D L+ +LL+
Sbjct: 1278 HLQQSDARIHTIIERLLSTLDTPSADIQQAVSACIAPLVFQFKQKVGDYLGILMEKLLNP 1337
Query: 1346 LMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFEC 1405
+ S R+GAA+G+AG+VKG+GIS+L ++ I L E D+ KRRE F+
Sbjct: 1338 TVASSM---RKGAAWGIAGLVKGYGISALSEFDIIRNLIEAAEDKKEPKRRESVGFCFQY 1394
Query: 1406 LCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLK 1465
L E LG+ FEPYVI++LP +L D V VR+A A +A+M+ + GVK ++P +
Sbjct: 1395 LSESLGKFFEPYVIEILPNILKNLGDAVPEVRDATARATKAIMAHTTGYGVKKLIPVAVS 1454
Query: 1466 GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525
L++ AWRTK+ SVQLLG MAY P QLS L IVP++ VL D+H +V+ A +L++
Sbjct: 1455 NLDEIAWRTKRGSVQLLGNMAYLDPTQLSASLSTIVPEIVGVLNDSHKEVRKAADESLKR 1514
Query: 1526 VGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL 1585
G VI+NPEI LVP LL + DP +T+ +LD L+QT FV+ +D PSLAL++ I+HRG+
Sbjct: 1515 FGEVIRNPEIQKLVPVLLQAIGDPTKYTEEALDSLIQTQFVHYIDGPSLALIIHIIHRGM 1574
Query: 1586 RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645
+RSA K+KA +IVGNM LV + KD+IPY+ L+ EV+ +VDP+P R+ AARA+G+
Sbjct: 1575 HDRSANIKRKACKIVGNMAILV-DTKDLIPYLQQLIDEVEIAMVDPVPNTRATAARALGA 1633
Query: 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
L+ +GEE FPDL+ LLD L ++ + +R G+AQ L+EV++ LG + +LP I+
Sbjct: 1634 LVERLGEEQFPDLIPRLLDTLSDESKSGDRLGSAQALAEVISGLGLTKLDEMLPTILAGV 1693
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765
++ RA +R+G++ L +LP G QF Y+ Q++ IL GLAD +E++RD AL AG ++V
Sbjct: 1694 TNFRAYIREGFMPLLLFLPVCFGSQFAPYINQIIQPILSGLADNDENIRDTALKAGKLIV 1753
Query: 1766 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825
++YAT ++ LLLP +E G+F++N RIR SSV+L G+LLF+V G S + E +D +
Sbjct: 1754 KNYATKAVDLLLPELERGMFDENDRIRLSSVQLTGELLFQVTGISSRN--EFSEEDGDHN 1811
Query: 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885
E G+ +++VLG+D+R+ +LAAL++ R+D S VR + +WK +V NTP+ +KEI+P
Sbjct: 1812 GEFSGK-LVDVLGQDRRDRILAALFVCRNDTSGIVRATTVDIWKALVPNTPRAVKEILPT 1870
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS-RRQGVC 1944
L +++ LASSS+ R +A + LG+LVR++G L ++P L L + S S RQGVC
Sbjct: 1871 LTGMIVTHLASSSNVLRNIAAQTLGDLVRRVGGNALSQLLPSLEESLIETSNSDSRQGVC 1930
Query: 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEI 2004
I L E++ SA + F ++ IRTAL D VRE+A L+F G A+DE+
Sbjct: 1931 IALYELIESASTETISQFQSTIVNIIRTALIDESATVREAAALSFDVFQDVVGKTAVDEV 1990
Query: 2005 VPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL 2049
+P LLH LE SD AL GL++I+S ++ + P ++P L+ P+
Sbjct: 1991 LPYLLHMLESSDNSDFALLGLQEIMSKKSDVIFPILIPTLLAPPI 2035
|
Acts as a translation activator that mediates translational control by regulating GCN2 kinase activity. Translational activator of GCN4. May be involved in sensing charged tRNA and stimulating the kinase activity of GCN2 in amino acid-starved cells. Required in vivo for the phosphorylation of eIF-2-alpha on 'Ser-52' by the protein kinase GCN2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|O94489|EF3_SCHPO Elongation factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tef3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 158/276 (57%), Gaps = 10/276 (3%)
Query: 1379 IAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAFSDQVVAV 1436
+ + + + L D+N A RE L E + + EPY++++LP ++ +D+ AV
Sbjct: 53 VFSAISKQLNDKN-ATARERVLKGLEAVANHGSVAADVEPYLVELLPAVIAKVADKQNAV 111
Query: 1437 REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQ 1495
R+AA A++A++ + VK ++PS+L+ + W K +S+QLL + AP QLS
Sbjct: 112 RDAAIAASKAIVRCTTPYAVKAIVPSVLESIHTTGKWNEKMNSLQLLDVLVEVAPSQLSY 171
Query: 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555
LP+I+P ++E + DT +V+ + + +V ++I N +I +P L+ + P +
Sbjct: 172 SLPQIIPVVSESMWDTKAEVKKQSKETMTKVCTLIANADIDRFIPELINCIAHP-EEVPE 230
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
++ L TTFV V AP+L+++VP++ RGL ERS K+K A I+ NM LV +P+ + P
Sbjct: 231 TIHSLGATTFVTEVQAPTLSIMVPLLARGLNERSTPIKRKTAVIIDNMSKLVEDPQVVAP 290
Query: 1616 YIGLLLP---EVKKVLVDPIPEVRSVAARAIGSLIR 1648
++ LLP +K + D PE RSV RAI +L R
Sbjct: 291 FLPKLLPGLYHIKDTIGD--PECRSVVQRAITTLER 324
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O14134|ELF1_SCHPO mRNA export factor elf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=elf1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 161/278 (57%), Gaps = 5/278 (1%)
Query: 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQ 1432
+LK G L ++ S RE A++ F + + LG E + LP +L +FSD+
Sbjct: 50 TLKTTGFLDGLERAARNKKSGFHREAAMIGFATVIKNLGTPSEVVFLPYLPTILDSFSDR 109
Query: 1433 VVAVREAAECAARAMMSQLSAQGVKL-VLPSLLKGLEDKA--WRTKQSSVQLLGAMAYCA 1489
VR+AA+ AA+A++ L A V+ ++PSL+ L+D + W +K +++QLLG++A +
Sbjct: 110 GEVVRQAAKMAAQALLDCLPAGAVETRLIPSLISYLDDSSIKWPSKVAALQLLGSLASSS 169
Query: 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 1549
P+ ++ + ++P + E + DT P++ A T + + SV++N +I +P L+ + P
Sbjct: 170 PKAVADYMAALIPCIKERMHDTKPEISRAAITCMLNLCSVVENNDIIPHIPKLVDCMAHP 229
Query: 1550 NDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609
+ + + L TTFV TV++ +LA+LVPI+ R L +RS + I N+C LV +
Sbjct: 230 -ETLEACIKDLSATTFVATVESVALAVLVPILKRALAQRSQSMLRLTVIITDNLCKLVPD 288
Query: 1610 PKDMIPYIGLLLPEVKKVL-VDPIPEVRSVAARAIGSL 1646
P + ++ L+P+V+++ +PEVR++A+ A+ +L
Sbjct: 289 PAEASDFLPELIPDVERIAQTAAMPEVRALASHALTTL 326
|
Has a direct role in the mRNA export process. Appears to act within the rae1 mediated mRNA export pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P29551|EF3_PNECA Elongation factor 3 OS=Pneumocystis carinii GN=TEF3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 157/286 (54%), Gaps = 11/286 (3%)
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQVVAVREAA 1440
TL E + +++ R E AL A + + EPY++++LP +L ++V AVR A
Sbjct: 53 TLEEQIESKDTLAR-EQALKALLLTLDATNKRVEPYLVRLLPRVLKQVGLEKVAAVRTQA 111
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499
A ++ ++ VK +L + ++ W K + +LL + AP Q+S LP+
Sbjct: 112 STVAEDIIKTMNPYAVKTILSHVTNSIKTSGKWMEKMCAFRLLDMLVEKAPCQMSYRLPE 171
Query: 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDI 1559
++P L+E + DT +++ + + V ++I NP+I +P L+ + P + ++
Sbjct: 172 LIPILSESMWDTRTDIKNQARKTMTSVCTLISNPDIDKFIPVLIDCIAQP-EKVPETIHT 230
Query: 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619
L TTFV V A +L+++VP+++RGL ER K+K+A I+ NMC LV +P + P++
Sbjct: 231 LGATTFVQEVHASTLSIMVPLLYRGLNERETTIKRKSAVIIDNMCKLVEDPYIIAPFLPK 290
Query: 1620 LLP---EVKKVLVDPIPEVRSVAARAIGSLIR--GMGEENFPDLVS 1660
L+P +K+ + D PE RSV R++ +LIR + E P++++
Sbjct: 291 LIPTLEHIKETIGD--PECRSVVNRSLATLIRVGNVKEGKIPEVLN 334
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Pneumocystis carinii (taxid: 4754) |
| >sp|P25997|EF3_CANAL Elongation factor 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=CEF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/326 (28%), Positives = 162/326 (49%), Gaps = 17/326 (5%)
Query: 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRRE 1397
++S LL +L +D E A + F SS+ ++ + E L + +K +
Sbjct: 13 VLSELLSKLQVADNKDE-------AASNISTFLNSSIVEHDVPVEFFEDLKKQIQSKDAK 65
Query: 1398 GALLAFECL-----CEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452
+L A + L EPYV+ ++ + V D+ V+ AA A A+ S ++
Sbjct: 66 VSLAALDAYKHIASTNGLSPSVEPYVVDLVSEVAVKAGDKNKDVQTAASDALLAIASAIT 125
Query: 1453 AQGVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT 1511
VK +LP L+ L + W K + ++ + + A Q++ +P+++P L+E + DT
Sbjct: 126 PTAVKAILPKLIDNLTNTNKWTEKVAILRAVSQLVDTAKAQIALRMPELIPVLSESMWDT 185
Query: 1512 HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDA 1571
+V+ A + + I N +I +P L+ + P + ++ +L TTFV+ V
Sbjct: 186 KKEVKEAATATMTKSTETIDNKDIEKFIPQLISCIAKPTE-VPETVHLLGATTFVSEVTM 244
Query: 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD- 1630
+L+++ P++ RGL ER K+KAA IV NMC LV +P+ + P++ LLP +K +
Sbjct: 245 ATLSIMAPLLSRGLAERDTAIKRKAAVIVDNMCKLVEDPQIVAPFMDKLLPGLKNNFANM 304
Query: 1631 PIPEVRSVAARAIGSLIR--GMGEEN 1654
PE R V RA+ +L R +GE +
Sbjct: 305 ADPEAREVTQRALNTLRRVGAVGEND 330
|
The main role of EF-3 may be to transduce nucleoside triphosphate energy into mechanical energy for translocation during translation. EF-3 stimulates EF-1-alpha-dependent binding of aminoacyl-tRNA to the ribosome. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) |
| >sp|P53978|EF3B_YEAST Elongation factor 3B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HEF3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 139/246 (56%), Gaps = 9/246 (3%)
Query: 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWR 1473
EPY++ +P + + V+ AA A +A+ S ++ VK +LP L+ LE W+
Sbjct: 85 EPYIVATVPSVCSKAGSKDNDVQLAATKALKAIASAVNPVAVKALLPHLIHSLETSNKWK 144
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
K + ++++ + A +Q++ +P+++P L+E + DT V+ A T + + + N
Sbjct: 145 EKVAVLEVISVLVDAAKEQIALRMPELIPVLSESMWDTKKGVKEAATTTITKATETVDNK 204
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
+I +P L+ + +PN+ ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 205 DIERFIPKLIECIANPNE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLAERETSIK 263
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 1648
+KAA I+ NMC LV +P+ + P++G LLP +K + D PE R V +A+ +L R
Sbjct: 264 RKAAVIIDNMCKLVEDPQVVAPFLGKLLPGLKNNFATIAD--PEAREVTLKALKTLRRVG 321
Query: 1649 GMGEEN 1654
+GE++
Sbjct: 322 NVGEDD 327
|
Weakly expressed functional homolog of translation elongation factor 3A (YEF3), not required for survival. Can complement loss of YEF3 when expressed from the YEF3 or ADH1 promoters. Required for the ATP-dependent release of deacylated tRNA from the ribosomal E-site during protein biosynthesis. Stimulates the eEF1A-dependent binding of aminoacyl-tRNA to the ribosomal A-site, which has reduced affinity for tRNA as long as the E-site is occupied. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P16521|EF3A_YEAST Elongation factor 3A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEF3 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 139/246 (56%), Gaps = 9/246 (3%)
Query: 1415 EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWR 1473
EPY++Q++P + ++ ++ A ++++ ++ +K +LP L + E W+
Sbjct: 85 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQ 144
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
K + + + AM A Q++ +P+++P L+E + DT +V++A A+ + + N
Sbjct: 145 EKIAILAAISAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK 204
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
+I +P+L+ + DP + ++ +L TTFV V +L+++VP++ RGL ER K
Sbjct: 205 DIERFIPSLIQCIADPTE-VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIK 263
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK---VLVDPIPEVRSVAARAIGSLIR-- 1648
+K+A I+ NMC LV +P+ + P++G LLP +K + D PE R V RA+ +L R
Sbjct: 264 RKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIAD--PEAREVTLRALKTLRRVG 321
Query: 1649 GMGEEN 1654
+GE++
Sbjct: 322 NVGEDD 327
|
Required for the ATP-dependent release of deacylated tRNA from the ribosomal E-site during protein biosynthesis. Stimulates the eEF1A-dependent binding of aminoacyl-tRNA to the ribosomal A-site, which has reduced affinity for tRNA as long as the E-site is occupied. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2058 | ||||||
| 296085156 | 2636 | unnamed protein product [Vitis vinifera] | 0.996 | 0.778 | 0.830 | 0.0 | |
| 359476554 | 2613 | PREDICTED: translational activator GCN1 | 0.989 | 0.779 | 0.828 | 0.0 | |
| 359476556 | 2461 | PREDICTED: translational activator GCN1 | 0.917 | 0.767 | 0.814 | 0.0 | |
| 356506010 | 2616 | PREDICTED: translational activator GCN1 | 0.991 | 0.779 | 0.781 | 0.0 | |
| 449477742 | 2611 | PREDICTED: LOW QUALITY PROTEIN: translat | 0.991 | 0.781 | 0.769 | 0.0 | |
| 449470206 | 2611 | PREDICTED: translational activator GCN1- | 0.991 | 0.781 | 0.769 | 0.0 | |
| 255562017 | 2459 | Translational activator GCN1, putative [ | 0.916 | 0.766 | 0.800 | 0.0 | |
| 240254318 | 2610 | protein ILITYHIA [Arabidopsis thaliana] | 0.979 | 0.772 | 0.749 | 0.0 | |
| 357512395 | 2751 | Translational activator GCN1 [Medicago t | 0.998 | 0.746 | 0.731 | 0.0 | |
| 334183637 | 2696 | protein ILITYHIA [Arabidopsis thaliana] | 0.960 | 0.733 | 0.731 | 0.0 |
| >gi|296085156|emb|CBI28651.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3492 bits (9054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1711/2060 (83%), Positives = 1874/2060 (90%), Gaps = 9/2060 (0%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S++L +IA SVST STK+R RIFR ++ ++ N+EMS E+AS LVDIIF T +YDD GS
Sbjct: 5 SESLAAIAGSVSTVSTKKRVRIFRDEIPPILTNSEMSAELASLLVDIIFNTLYIYDDHGS 64
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATV 126
RKAVDDVI K LGEV FMK+FAA LVQ MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+V
Sbjct: 65 RKAVDDVISKALGEVIFMKSFAATLVQFMEKQSKFQSNIGCYRLLKWSCLLLSKSRFASV 124
Query: 127 SKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYK 186
SKNA CRVA QAS+LHIVMQ SFR RRACK+TFF LFSQS DIYK Y +ELKDARI YK
Sbjct: 125 SKNAFCRVATVQASVLHIVMQGSFRVRRACKRTFFCLFSQSLDIYKIYIEELKDARISYK 184
Query: 187 HSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSRE 246
SPELI LLLEF S+ P LFE+C+PIFLDIYVKAVLNA+E+P KGLSE+F PLFTHM E
Sbjct: 185 DSPELIWLLLEFSSRKPLLFEQCKPIFLDIYVKAVLNAREEPAKGLSEAFHPLFTHMVHE 244
Query: 247 DFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKT 306
DF+SIV+P++IKMLKRNPEI+LES+G+LLKSVNLDLSKYA EILSVVL+Q RHADEGR+
Sbjct: 245 DFKSIVVPSAIKMLKRNPEIVLESVGVLLKSVNLDLSKYAIEILSVVLAQARHADEGRRH 304
Query: 307 GALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK 366
GAL+I+ CLS+KSSNPDA+EAMF +IKAVIGGSEGRLAFPYQR+GM+NALQELSNA EGK
Sbjct: 305 GALSIVCCLSQKSSNPDAIEAMFNSIKAVIGGSEGRLAFPYQRVGMINALQELSNAPEGK 364
Query: 367 YLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
YLNSLS TIC FLLSCYKD+GNEEVKLAIL A+ASW RSAD +Q D++SF SGLKEKE
Sbjct: 365 YLNSLSPTICGFLLSCYKDDGNEEVKLAILPALASWVARSADALQRDVVSFLVSGLKEKE 424
Query: 427 ALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAA 486
LRRGHLRCLR I NTDA++ VSSLLGPL+QLVKTGFTKA QRLDGIYA L+V KIAA
Sbjct: 425 GLRRGHLRCLRFIFKNTDAIILVSSLLGPLVQLVKTGFTKAAQRLDGIYALLLVAKIAAV 484
Query: 487 DIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETF 546
DIKAEETV KEKLWSL+SQNEPSLVP +M SKLS +DCMACV+LL VL+VEH HRVLETF
Sbjct: 485 DIKAEETVAKEKLWSLISQNEPSLVPISMASKLSTEDCMACVDLLEVLIVEHLHRVLETF 544
Query: 547 SVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIIS 606
SV L QL+L CHPSWDIR+ A+D T+KII++ P L+EALL EF+NFLS+VGEKI +
Sbjct: 545 SVTPLSQLILFLVCHPSWDIRRAAYDNTKKIISAAPKLAEALLSEFTNFLSVVGEKIQLL 604
Query: 607 KTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRD 666
KTSDT++ +D+QVPFLPSVEV VK L+VI+S ALA PSA ++IFCSHHP IVGTGKR+
Sbjct: 605 KTSDTENSLDAQVPFLPSVEVLVKALIVISSEALAAVPSAIMQIIFCSHHPCIVGTGKRN 664
Query: 667 AVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSIT 726
AVW+RL K L+ GF+VI I++A+V LCK LLG LMS N LEQ+AAINSLSTLMS+
Sbjct: 665 AVWRRLQKGLQTRGFDVIGIITANVEILCKGLLGPTALMSPNHLEQEAAINSLSTLMSVI 724
Query: 727 PKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSK 786
PKDTY+ FEKH + PD HD++SENDIQ+F+TPEGMLSSEQGVY+AE VA KN +Q+K
Sbjct: 725 PKDTYIEFEKHFSNFPDRQSHDTVSENDIQIFHTPEGMLSSEQGVYVAESVATKNMRQAK 784
Query: 787 GRFRMYEEQDGVDHVGSN--------HSAKRESANREVSGAGKKDIGKSTKKADKGKTAK 838
GRFRMY++QD D V SN HS ++E+A+REV+G GKKDIGKSTKKADKGKTAK
Sbjct: 785 GRFRMYDDQDDGDDVNSNLSVKRETNHSGRKETASREVTGVGKKDIGKSTKKADKGKTAK 844
Query: 839 EEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQS 898
EEARELLL EEASIR+KV +++NLSLML ALGEMAIANPVFAHS+LPSLVKFV+PLL+S
Sbjct: 845 EEARELLLREEASIRQKVGVIKKNLSLMLRALGEMAIANPVFAHSELPSLVKFVEPLLRS 904
Query: 899 PIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KE 957
P+V +VAYE +VKL+RCTA PLCNWALDIATALRLIVTEEVHV +LIPSVGE N +
Sbjct: 905 PVVSEVAYETMVKLARCTASPLCNWALDIATALRLIVTEEVHVLLELIPSVGEGETNERP 964
Query: 958 SLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPL 1017
SL LFERI++GL+VSCKSGPLPVDSFTFVFPI+ERILLS K+TGLHDDVLQ+LY HMDP+
Sbjct: 965 SLGLFERIISGLSVSCKSGPLPVDSFTFVFPIMERILLSSKKTGLHDDVLQILYLHMDPI 1024
Query: 1018 LPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMAC 1077
LPLPRLRM+SVLYH LGVVP+YQA+IG ALNELCLGLQ +EVA AL+GVY KDVHVRMAC
Sbjct: 1025 LPLPRLRMLSVLYHALGVVPTYQASIGPALNELCLGLQSDEVAPALYGVYAKDVHVRMAC 1084
Query: 1078 LNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFK 1137
LNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSVAE AEDIWDR GY FGTDYSGLFK
Sbjct: 1085 LNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSVAELAEDIWDRCGYVFGTDYSGLFK 1144
Query: 1138 ALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGI 1197
ALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLFSLYIRD+G G DNVDA W+GRQGI
Sbjct: 1145 ALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLFSLYIRDVGFGEDNVDASWIGRQGI 1204
Query: 1198 ALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFP 1257
ALALHSAADVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDKHGRDNVSLLFP
Sbjct: 1205 ALALHSAADVLRTKDLPVVMTFLISRALADPNADVRGRMINAGILIIDKHGRDNVSLLFP 1264
Query: 1258 IFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQ 1317
IFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV+KLLDVLNTPSEAVQ
Sbjct: 1265 IFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVEKLLDVLNTPSEAVQ 1324
Query: 1318 RAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKY 1377
RAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK+
Sbjct: 1325 RAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKF 1384
Query: 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVR 1437
GIA LREGLADRNSAK REGALL FECLCEKLGRLFEPYVIQMLPLLLV+FSDQVVAVR
Sbjct: 1385 GIATVLREGLADRNSAKCREGALLGFECLCEKLGRLFEPYVIQMLPLLLVSFSDQVVAVR 1444
Query: 1438 EAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497
+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL
Sbjct: 1445 DGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1504
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 1557
PKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSL
Sbjct: 1505 PKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSL 1564
Query: 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617
DILLQTTFVN++DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI
Sbjct: 1565 DILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1624
Query: 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG 1677
GLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEENFPDLVSWLLD LKSD SNVERSG
Sbjct: 1625 GLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEENFPDLVSWLLDTLKSDASNVERSG 1684
Query: 1678 AAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737
AAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG+QFQNYLQQ
Sbjct: 1685 AAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVRDGYLTLFKYLPRSLGLQFQNYLQQ 1744
Query: 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1797
VLPAILDGLADENESVRDAAL AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE
Sbjct: 1745 VLPAILDGLADENESVRDAALSAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVE 1804
Query: 1798 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857
LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE LGRDKRNEVLAALYMVR+DVS
Sbjct: 1805 LLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKRNEVLAALYMVRADVS 1864
Query: 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG 1917
+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+SLASSSSERRQVAGR+LGELVRKLG
Sbjct: 1865 ISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERRQVAGRSLGELVRKLG 1924
Query: 1918 ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977
ERVLP IIPIL++GLKDP SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS
Sbjct: 1925 ERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1984
Query: 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVL 2037
EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LEDDQTSDTALDGLKQILSVRTTAVL
Sbjct: 1985 TPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTALDGLKQILSVRTTAVL 2044
Query: 2038 PHILPKLVHLPLSYVSLYLL 2057
PHILPKLVHLPL+ + + L
Sbjct: 2045 PHILPKLVHLPLTAFNAHAL 2064
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476554|ref|XP_002267871.2| PREDICTED: translational activator GCN1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3474 bits (9009), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1700/2052 (82%), Positives = 1862/2052 (90%), Gaps = 16/2052 (0%)
Query: 7 SDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGS 66
S++L +IA SVST STK+R RIFR ++ ++ N+EMS E+AS LVDIIF T +YDD GS
Sbjct: 5 SESLAAIAGSVSTVSTKKRVRIFRDEIPPILTNSEMSAELASLLVDIIFNTLYIYDDHGS 64
Query: 67 RKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATV 126
RKAVDDVI K LGEV FMK+FAA LVQ MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+V
Sbjct: 65 RKAVDDVISKALGEVIFMKSFAATLVQFMEKQSKFQSNIGCYRLLKWSCLLLSKSRFASV 124
Query: 127 SKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYK 186
SKNA CRVA QAS+LHIVMQ SFR RRACK+TFF LFSQS DIYK Y +ELKDARI YK
Sbjct: 125 SKNAFCRVATVQASVLHIVMQGSFRVRRACKRTFFCLFSQSLDIYKIYIEELKDARISYK 184
Query: 187 HSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSRE 246
SPELI LLLEF S+ P LFE+C+PIFLDIYVKAVLNA+E+P KGLSE+F PLFTHM E
Sbjct: 185 DSPELIWLLLEFSSRKPLLFEQCKPIFLDIYVKAVLNAREEPAKGLSEAFHPLFTHMVHE 244
Query: 247 DFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKT 306
DF+SIV+P++IKMLKRNPEI+LES+G+LLKSVNLDLSKYA EILSVVL+Q RHADEGR+
Sbjct: 245 DFKSIVVPSAIKMLKRNPEIVLESVGVLLKSVNLDLSKYAIEILSVVLAQARHADEGRRH 304
Query: 307 GALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK 366
GAL+I+ CLS+KSSNPDA+EAMF +IKAVIGGSEGRLAFPYQR+GM+NALQELSNA EGK
Sbjct: 305 GALSIVCCLSQKSSNPDAIEAMFNSIKAVIGGSEGRLAFPYQRVGMINALQELSNAPEGK 364
Query: 367 YLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
YLNSLS TIC FLLSCYKD+GNEEVKLAIL A+ASW RSAD +Q D++SF SGLKEKE
Sbjct: 365 YLNSLSPTICGFLLSCYKDDGNEEVKLAILPALASWVARSADALQRDVVSFLVSGLKEKE 424
Query: 427 ALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAA 486
LRRGHLRCLR I NTDA++ VSSLLGPL+QLVKTGFTKA QRLDGIYA L+V KIAA
Sbjct: 425 GLRRGHLRCLRFIFKNTDAIILVSSLLGPLVQLVKTGFTKAAQRLDGIYALLLVAKIAAV 484
Query: 487 DIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETF 546
DIKAEETV KEKLWSL+SQNEPSLVP +M SKLS +DCMACV+LL VL+VEH HRVLETF
Sbjct: 485 DIKAEETVAKEKLWSLISQNEPSLVPISMASKLSTEDCMACVDLLEVLIVEHLHRVLETF 544
Query: 547 SVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIIS 606
SV L QL+L CHPSWDIR+ A+D T+KII++ P L+EALL EF+NFLS+VGEKI +
Sbjct: 545 SVTPLSQLILFLVCHPSWDIRRAAYDNTKKIISAAPKLAEALLSEFTNFLSVVGEKIQLL 604
Query: 607 KTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKRD 666
KTSDT++ +D+QVPFLPSVEV VK L+VI+S ALA PSA ++IFCSHHP IVGTGKR+
Sbjct: 605 KTSDTENSLDAQVPFLPSVEVLVKALIVISSEALAAVPSAIMQIIFCSHHPCIVGTGKRN 664
Query: 667 AVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSIT 726
AVW+RL K L+ GF+VI I++A+V LCK LLG LMS N LEQ+AAINSLSTLMS+
Sbjct: 665 AVWRRLQKGLQTRGFDVIGIITANVEILCKGLLGPTALMSPNHLEQEAAINSLSTLMSVI 724
Query: 727 PKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSK 786
PKDTY+ FEKH + PD HD++SENDIQ+F+TPEGMLSSEQGVY+AE VA KN +Q+K
Sbjct: 725 PKDTYIEFEKHFSNFPDRQSHDTVSENDIQIFHTPEGMLSSEQGVYVAESVATKNMRQAK 784
Query: 787 GRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLL 846
+NHS ++E+A+REV+G GKKDIGKSTKKADKGKTAKEEARELLL
Sbjct: 785 E---------------TNHSGRKETASREVTGVGKKDIGKSTKKADKGKTAKEEARELLL 829
Query: 847 NEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAY 906
EEASIR+KV +++NLSLML ALGEMAIANPVFAHS+LPSLVKFV+PLL+SP+V +VAY
Sbjct: 830 REEASIRQKVGVIKKNLSLMLRALGEMAIANPVFAHSELPSLVKFVEPLLRSPVVSEVAY 889
Query: 907 EALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLFERI 965
E +VKL+RCTA PLCNWALDIATALRLIVTEEVHV +LIPSVGE N + SL LFERI
Sbjct: 890 ETMVKLARCTASPLCNWALDIATALRLIVTEEVHVLLELIPSVGEGETNERPSLGLFERI 949
Query: 966 VNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRM 1025
++GL+VSCKSGPLPVDSFTFVFPI+ERILLS K+TGLHDDVLQ+LY HMDP+LPLPRLRM
Sbjct: 950 ISGLSVSCKSGPLPVDSFTFVFPIMERILLSSKKTGLHDDVLQILYLHMDPILPLPRLRM 1009
Query: 1026 ISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIP 1085
+SVLYH LGVVP+YQA+IG ALNELCLGLQ +EVA AL+GVY KDVHVRMACLNAVKCIP
Sbjct: 1010 LSVLYHALGVVPTYQASIGPALNELCLGLQSDEVAPALYGVYAKDVHVRMACLNAVKCIP 1069
Query: 1086 AVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYN 1145
AVS+ SLP+N+EV+TS+WIA+HD EKSVAE AEDIWDR GY FGTDYSGLFKALSH NYN
Sbjct: 1070 AVSSCSLPQNVEVATSIWIALHDREKSVAELAEDIWDRCGYVFGTDYSGLFKALSHINYN 1129
Query: 1146 VRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205
VRLAA EALA ALDEYPD+IQ +LSTLFSLYIRD+G G DNVDA W+GRQGIALALHSAA
Sbjct: 1130 VRLAAGEALAAALDEYPDTIQETLSTLFSLYIRDVGFGEDNVDASWIGRQGIALALHSAA 1189
Query: 1206 DVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNK 1265
DVLRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDKHGRDNVSLLFPIFENYLNK
Sbjct: 1190 DVLRTKDLPVVMTFLISRALADPNADVRGRMINAGILIIDKHGRDNVSLLFPIFENYLNK 1249
Query: 1266 KASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLS 1325
K SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLS
Sbjct: 1250 KTSDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLS 1309
Query: 1326 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 1385
PLMQS Q++AP LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK+GIA LRE
Sbjct: 1310 PLMQSKQEDAPALVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKFGIATVLRE 1369
Query: 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAAR 1445
GLADRNSAK REGALL FECLCEKLGRLFEPYVIQMLPLLLV+FSDQVVAVR+ AECAAR
Sbjct: 1370 GLADRNSAKCREGALLGFECLCEKLGRLFEPYVIQMLPLLLVSFSDQVVAVRDGAECAAR 1429
Query: 1446 AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505
AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT
Sbjct: 1430 AMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1489
Query: 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565
EVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQTTF
Sbjct: 1490 EVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQTTF 1549
Query: 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625
VN++DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK
Sbjct: 1550 VNSIDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1609
Query: 1626 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
KVLVDPIPEVRSVAARA+GSLIRGMGEENFPDLVSWLLD LKSD SNVERSGAAQGLSEV
Sbjct: 1610 KVLVDPIPEVRSVAARALGSLIRGMGEENFPDLVSWLLDTLKSDASNVERSGAAQGLSEV 1669
Query: 1686 LAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
LAALGT YFEH+LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG+QFQNYLQQVLPAILDG
Sbjct: 1670 LAALGTEYFEHLLPDIIRNCSHQRASVRDGYLTLFKYLPRSLGLQFQNYLQQVLPAILDG 1729
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805
LADENESVRDAAL AGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK
Sbjct: 1730 LADENESVRDAALSAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1789
Query: 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865
VAGTSGKALLEGGSDDEGASTEAHGRAIIE LGRDKRNEVLAALYMVR+DVS+SVRQAAL
Sbjct: 1790 VAGTSGKALLEGGSDDEGASTEAHGRAIIEGLGRDKRNEVLAALYMVRADVSISVRQAAL 1849
Query: 1866 HVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSII 1925
HVWKTIVANTPKTL+EIMPVLMNTLI+SLASSSSERRQVAGR+LGELVRKLGERVLP II
Sbjct: 1850 HVWKTIVANTPKTLREIMPVLMNTLITSLASSSSERRQVAGRSLGELVRKLGERVLPLII 1909
Query: 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
PIL++GLKDP SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS EVRESA
Sbjct: 1910 PILAQGLKDPKTSRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSTPEVRESA 1969
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2045
GLAFSTL+KSAGMQAIDEIVPTLLH+LEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV
Sbjct: 1970 GLAFSTLYKSAGMQAIDEIVPTLLHSLEDDQTSDTALDGLKQILSVRTTAVLPHILPKLV 2029
Query: 2046 HLPLSYVSLYLL 2057
HLPL+ + + L
Sbjct: 2030 HLPLTAFNAHAL 2041
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476556|ref|XP_003631859.1| PREDICTED: translational activator GCN1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3246 bits (8415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1600/1964 (81%), Positives = 1743/1964 (88%), Gaps = 76/1964 (3%)
Query: 95 MEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHIVMQRSFRERR 154
MEKQSKFQS++GCYRLLKWSCLLLSKS+FA+VSKNA CRVA QAS+LHIVMQ SFR RR
Sbjct: 1 MEKQSKFQSNIGCYRLLKWSCLLLSKSRFASVSKNAFCRVATVQASVLHIVMQGSFRVRR 60
Query: 155 ACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFL 214
ACK+TFF LFSQS DIYK Y +ELKDARI YK SPELI LLLEF S+ P LFE+C+PIFL
Sbjct: 61 ACKRTFFCLFSQSLDIYKIYIEELKDARISYKDSPELIWLLLEFSSRKPLLFEQCKPIFL 120
Query: 215 DIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGIL 274
DIYVKAVLNA+E+P KGLSE+F PLFTHM EDF+SIV+P++IKMLKRNPEI+LES+G+L
Sbjct: 121 DIYVKAVLNAREEPAKGLSEAFHPLFTHMVHEDFKSIVVPSAIKMLKRNPEIVLESVGVL 180
Query: 275 LKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKA 334
LKSVNLDLSKYA EILSVVL+Q RHADEGR+ GAL+I+ CLS+KSSNPDA+EAMF +IKA
Sbjct: 181 LKSVNLDLSKYAIEILSVVLAQARHADEGRRHGALSIVCCLSQKSSNPDAIEAMFNSIKA 240
Query: 335 VIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLA 394
VIGGSEGRLAFPYQR+GM+NALQELSNA EGKYLNSLS TIC FLLSCYKD+GNEEVKLA
Sbjct: 241 VIGGSEGRLAFPYQRVGMINALQELSNAPEGKYLNSLSPTICGFLLSCYKDDGNEEVKLA 300
Query: 395 ILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLG 454
IL A+ASW RSAD +Q D++SF SGLKEKE LRRGHLRCLR I NTDA++ VSSLLG
Sbjct: 301 ILPALASWVARSADALQRDVVSFLVSGLKEKEGLRRGHLRCLRFIFKNTDAIILVSSLLG 360
Query: 455 PLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTA 514
PL+QLVKTGFTKA QRLDGIYA L+V KIAA DIKAEETV KEKLWSL+SQNEPSLVP +
Sbjct: 361 PLVQLVKTGFTKAAQRLDGIYALLLVAKIAAVDIKAEETVAKEKLWSLISQNEPSLVPIS 420
Query: 515 MISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDAT 574
M SKLS +DCMACV+LL VL+VEH HRVLETFS +L+QL+L CHPSWDIR+ A+D T
Sbjct: 421 MASKLSTEDCMACVDLLEVLIVEHLHRVLETFSKNVLVQLILFLVCHPSWDIRRAAYDNT 480
Query: 575 RKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
+KII++ P L+EALL EF+NFLS+VGEKI + KTSDT++ +D+QVPFLPSVEV VK L+V
Sbjct: 481 KKIISAAPKLAEALLSEFTNFLSVVGEKIQLLKTSDTENSLDAQVPFLPSVEVLVKALIV 540
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNL 694
I+S ALA PSA ++IFCSHHP IVGTGKR+AVW
Sbjct: 541 ISSEALAAVPSAIMQIIFCSHHPCIVGTGKRNAVW------------------------- 575
Query: 695 CKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSEND 754
+ LLG LMS N LEQ+AAINSLSTLMS+ PKDTY+ FEKH + PD HD++SEND
Sbjct: 576 -RGLLGPTALMSPNHLEQEAAINSLSTLMSVIPKDTYIEFEKHFSNFPDRQSHDTVSEND 634
Query: 755 IQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANR 814
IQ+F+TPEGMLSSEQGVY+AE VA KN +Q+KGRFR + +NHS ++E+A+R
Sbjct: 635 IQIFHTPEGMLSSEQGVYVAESVATKNMRQAKGRFR----------IETNHSGRKETASR 684
Query: 815 EVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMA 874
EV+G GKKDIGKSTKKADKGKTAKEEARELLL EEASIR+KV +++NLSLML ALGEMA
Sbjct: 685 EVTGVGKKDIGKSTKKADKGKTAKEEARELLLREEASIRQKVGVIKKNLSLMLRALGEMA 744
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
IANPVFAHS+LPSLVKFV+PLL+SP+V +VAYE +VKL+RCTA PLCNWALDIATALRLI
Sbjct: 745 IANPVFAHSELPSLVKFVEPLLRSPVVSEVAYETMVKLARCTASPLCNWALDIATALRLI 804
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
VTEEVHV +LIPSVGE N + SL LFERI++GL+VSCKSGPLPVDSFTFVFP
Sbjct: 805 VTEEVHVLLELIPSVGEGETNERPSLGLFERIISGLSVSCKSGPLPVDSFTFVFP----- 859
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLG 1053
VLYH LGVVP+YQA+IG ALNELCLG
Sbjct: 860 ----------------------------------VLYHALGVVPTYQASIGPALNELCLG 885
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
LQ +EVA AL+GVY KDVHVRMACLNAVKCIPAVS+ SLP+N+EV+TS+WIA+HD EKSV
Sbjct: 886 LQSDEVAPALYGVYAKDVHVRMACLNAVKCIPAVSSCSLPQNVEVATSIWIALHDREKSV 945
Query: 1114 AEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLF 1173
AE AEDIWDR GY FGTDYSGLFKALSH NYNVRLAA EALA ALDEYPD+IQ +LSTLF
Sbjct: 946 AELAEDIWDRCGYVFGTDYSGLFKALSHINYNVRLAAGEALAAALDEYPDTIQETLSTLF 1005
Query: 1174 SLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVR 1233
SLYIRD+G G DNVDA W+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVR
Sbjct: 1006 SLYIRDVGFGEDNVDASWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVR 1065
Query: 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293
GRM+NAGI+IIDKHGRDNVSLLFPIFENYLNKK SDEEKYDLVREGVVIFTGALAKHLAK
Sbjct: 1066 GRMINAGILIIDKHGRDNVSLLFPIFENYLNKKTSDEEKYDLVREGVVIFTGALAKHLAK 1125
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
DDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLSPLMQS Q++AP LVSRLLDQLMKSDKYG
Sbjct: 1126 DDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLSPLMQSKQEDAPALVSRLLDQLMKSDKYG 1185
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ERRGAAFGLAGVVKGFGISSLKK+GIA LREGLADRNSAK REGALL FECLCEKLGRL
Sbjct: 1186 ERRGAAFGLAGVVKGFGISSLKKFGIATVLREGLADRNSAKCREGALLGFECLCEKLGRL 1245
Query: 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYVIQMLPLLLV+FSDQVVAVR+ AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR
Sbjct: 1246 FEPYVIQMLPLLLVSFSDQVVAVRDGAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1305
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNP
Sbjct: 1306 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQMALQQVGSVIKNP 1365
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI++LVPTLLMGLTDPND+TKYSLDILLQTTFVN++DAPSLALLVPIVHRGLRERSAETK
Sbjct: 1366 EISALVPTLLMGLTDPNDYTKYSLDILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETK 1425
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+GSLIRGMGEE
Sbjct: 1426 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEE 1485
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVR 1713
NFPDLVSWLLD LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPDIIRNCSHQRASVR
Sbjct: 1486 NFPDLVSWLLDTLKSDASNVERSGAAQGLSEVLAALGTEYFEHLLPDIIRNCSHQRASVR 1545
Query: 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1773
DGYLTLFKYLPRSLG+QFQNYLQQVLPAILDGLADENESVRDAAL AGHVLVEHYATTSL
Sbjct: 1546 DGYLTLFKYLPRSLGLQFQNYLQQVLPAILDGLADENESVRDAALSAGHVLVEHYATTSL 1605
Query: 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833
PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI
Sbjct: 1606 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1665
Query: 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1893
IE LGRDKRNEVLAALYMVR+DVS+SVRQAALHVWKTIVANTPKTL+EIMPVLMNTLI+S
Sbjct: 1666 IEGLGRDKRNEVLAALYMVRADVSISVRQAALHVWKTIVANTPKTLREIMPVLMNTLITS 1725
Query: 1894 LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953
LASSSSERRQVAGR+LGELVRKLGERVLP IIPIL++GLKDP SRRQGVCIGLSEVMAS
Sbjct: 1726 LASSSSERRQVAGRSLGELVRKLGERVLPLIIPILAQGLKDPKTSRRQGVCIGLSEVMAS 1785
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
AGKSQLLSFMDELIPTIRTALCDS EVRESAGLAFSTL+KSAGMQAIDEIVPTLLH+LE
Sbjct: 1786 AGKSQLLSFMDELIPTIRTALCDSTPEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHSLE 1845
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSYVSLYLL 2057
DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPL+ + + L
Sbjct: 1846 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLTAFNAHAL 1889
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506010|ref|XP_003521781.1| PREDICTED: translational activator GCN1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3188 bits (8265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1606/2056 (78%), Positives = 1813/2056 (88%), Gaps = 16/2056 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNT--EMSPEIASFLVDIIFKTFSVY 61
A+S +L+S++ VSTSST R RIFR ++ + + ++ EMS E+AS L DIIF+T ++Y
Sbjct: 3 AESLQSLVSLSELVSTSSTNHRVRIFRREIPAFLNSSTSEMSTELASLLTDIIFRTVAIY 62
Query: 62 DDRGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKS 121
DD SRKAVDDVI K LG FMKTFA ALVQ MEKQSKFQSHVG YRLL WSCLLLSKS
Sbjct: 63 DDLRSRKAVDDVIVKALGGTVFMKTFAGALVQNMEKQSKFQSHVGGYRLLSWSCLLLSKS 122
Query: 122 QFATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDA 181
+FA VSKNALCRVAAAQASLL +V++RSFRERRAC++ FFHLFSQ PDIYK Y +EL++
Sbjct: 123 KFAAVSKNALCRVAAAQASLLSLVLKRSFRERRACRKKFFHLFSQLPDIYKVYMEELRNG 182
Query: 182 RIPYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFT 241
RIP+K SPEL+ LLLEF S+SPSLF + + FLDIYV A+L+AKEKP K L+E+F PL+
Sbjct: 183 RIPFKDSPELLMLLLEFSSRSPSLFGEFKVTFLDIYVNAILSAKEKPGKSLTEAFHPLYL 242
Query: 242 HMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHAD 301
MS EDFQSIV+P+S+KMLKRNPEI+LES+GILLKSVNLDLSKYA EILSVVL+Q RHAD
Sbjct: 243 QMSHEDFQSIVIPSSVKMLKRNPEIVLESVGILLKSVNLDLSKYAAEILSVVLAQARHAD 302
Query: 302 EGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSN 361
EGR+ GAL I+ LS+KSSNPDAL+ MF AIKAVI GSEGRLAFPYQR+GMVNA+QELS
Sbjct: 303 EGRRDGALAIVQSLSQKSSNPDALDTMFNAIKAVIKGSEGRLAFPYQRVGMVNAIQELSY 362
Query: 362 ATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASG 421
A +GKYL SLS TIC FLLS YKD+GNEEVK+ ILSA+ASWA RS DIIQ L+SF ASG
Sbjct: 363 APDGKYLISLSRTICDFLLSYYKDDGNEEVKIVILSAIASWAVRSTDIIQESLVSFLASG 422
Query: 422 LKEKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVG 481
LKEKE LR+G LR L IC N DAVL++ L+G L+QLVKTGFTKAVQRLDGIYA L+V
Sbjct: 423 LKEKETLRKGFLRSLHAICKNEDAVLKMLPLIGTLMQLVKTGFTKAVQRLDGIYALLLVA 482
Query: 482 KIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHR 541
KIAA DIKAEET+ KEK+W+L+SQNEPS+VP +M SKLS++D M CV+LL VLLVEH
Sbjct: 483 KIAAVDIKAEETLVKEKIWALISQNEPSVVPISMASKLSIEDNMTCVDLLEVLLVEHLQC 542
Query: 542 VLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGE 601
L FSV+L+LQL++ F CHP WDIR+MA+D RKII S P LS+ LLLEFS +L+L+GE
Sbjct: 543 TLSNFSVRLMLQLMIFFMCHPRWDIRRMAYDVARKIIPSAPQLSKDLLLEFSKYLTLIGE 602
Query: 602 KIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVG 661
K + KTSD+D +D QVPF+PSVEV VK LL+++ AL P + R+I CSHHP +VG
Sbjct: 603 KHLALKTSDSDISLDPQVPFIPSVEVLVKALLIMSPAALKHAPESFFRIILCSHHPCVVG 662
Query: 662 TGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLST 721
K DAVW+RL KCL+ GF VI+++SA+VGN +VLLG +GL SAN LEQQAAI SL
Sbjct: 663 GAKIDAVWKRLSKCLQTQGFVVIDVISANVGNFLQVLLGPMGLKSANPLEQQAAILSLCN 722
Query: 722 LMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKN 781
LMSI P DTY+ FEK+L +LP+ + HD+L ENDIQ+F TPEGMLS+EQGVY+AE V AKN
Sbjct: 723 LMSIIPGDTYIEFEKNLLNLPERFAHDTLLENDIQIFLTPEGMLSTEQGVYVAESVTAKN 782
Query: 782 TKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEA 841
TKQ DH SNHS +R+ +RE +GAGKKD GK+ KKADKGKTAKEEA
Sbjct: 783 TKQ--------------DHTRSNHSVRRDQPSREAAGAGKKDTGKAAKKADKGKTAKEEA 828
Query: 842 RELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIV 901
RELLL EEAS+R++V+ +Q+NLSLML LG+MAIAN VFAHS+LPS+VKFV+PL++SPIV
Sbjct: 829 RELLLKEEASVRDRVREIQKNLSLMLRTLGDMAIANSVFAHSRLPSMVKFVEPLMRSPIV 888
Query: 902 GDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCL 961
D A+E +VKL+RCTA PLC+WALDI+TALRLIVT+EVH+ DL+PSV E N+ L
Sbjct: 889 SDEAFETMVKLARCTAPPLCDWALDISTALRLIVTDEVHLLLDLVPSVTEEEFNERPHGL 948
Query: 962 FERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLP 1021
FERI++GL++SCKSG LPVDSF+F+FPIIERILL K+T HDDVL++ Y H+DP LPLP
Sbjct: 949 FERILDGLSISCKSGALPVDSFSFIFPIIERILLCSKKTKFHDDVLRIFYLHLDPHLPLP 1008
Query: 1022 RLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAV 1081
R+RM+SVLYHVLGVVP+YQA+IG ALNEL LGLQP EVASAL+GVY KDVHVRMACLNAV
Sbjct: 1009 RIRMLSVLYHVLGVVPAYQASIGPALNELSLGLQPAEVASALYGVYAKDVHVRMACLNAV 1068
Query: 1082 KCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSH 1141
KCIPAV+ RSLPEN+EV+TS+WIA+HDPEKSVA+ AEDIWD YG+DFGTD+SGL+KALSH
Sbjct: 1069 KCIPAVANRSLPENVEVATSIWIALHDPEKSVAQVAEDIWDHYGFDFGTDFSGLYKALSH 1128
Query: 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201
NYNVR+AAAEALA ALDE+PDSIQ SLSTLFSLYI D+G+G DNVDAGWLGRQGIALAL
Sbjct: 1129 INYNVRVAAAEALAAALDEHPDSIQESLSTLFSLYILDMGVGDDNVDAGWLGRQGIALAL 1188
Query: 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFEN 1261
H+AAD+LRTKDLPV+MTFLISRALAD NADVRGRM+NAGI+IIDK+G+DNVSLLFPIFEN
Sbjct: 1189 HAAADILRTKDLPVVMTFLISRALADLNADVRGRMINAGILIIDKNGKDNVSLLFPIFEN 1248
Query: 1262 YLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
YLNK A DEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS
Sbjct: 1249 YLNKTAPDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1308
Query: 1322 SCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381
+CLSPLMQS QD+A L +RL+DQ+MKS+KYGERRGAAFGLAG+VKGFGIS LKKY I
Sbjct: 1309 ACLSPLMQSKQDDAAALFNRLMDQMMKSEKYGERRGAAFGLAGLVKGFGISCLKKYRIVI 1368
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAE 1441
TL+E LA+RNSAK REGALL FECLCE LGR+FEPYVIQMLPLLLV+FSDQV AVREAAE
Sbjct: 1369 TLQESLAERNSAKSREGALLGFECLCETLGRIFEPYVIQMLPLLLVSFSDQVNAVREAAE 1428
Query: 1442 CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501
CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV
Sbjct: 1429 CAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1488
Query: 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 1561
PKLTEVLTDTHPKVQSAGQ ALQQVGSVIKNPEI++LVPTLL GL+DPN+HTKYSLDILL
Sbjct: 1489 PKLTEVLTDTHPKVQSAGQMALQQVGSVIKNPEISALVPTLLKGLSDPNEHTKYSLDILL 1548
Query: 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621
QTTFVN++DAPSLALLVPIVHRGLRERSA+TKK+AAQIVGNMCSLVTEPKDMIPYIGLLL
Sbjct: 1549 QTTFVNSIDAPSLALLVPIVHRGLRERSADTKKRAAQIVGNMCSLVTEPKDMIPYIGLLL 1608
Query: 1622 PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 1681
PEVKKVLVDPIPEVRSVAARAIGSLI GMGEENFPDLV WL D LKSDNSNVERSGAAQG
Sbjct: 1609 PEVKKVLVDPIPEVRSVAARAIGSLIGGMGEENFPDLVPWLFDTLKSDNSNVERSGAAQG 1668
Query: 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741
LSEVLAALG +FEH+LPDIIR+CSHQ+ASVRDGYLTLFKYLPRSLGVQFQNYL QVLPA
Sbjct: 1669 LSEVLAALGIDFFEHVLPDIIRHCSHQKASVRDGYLTLFKYLPRSLGVQFQNYLPQVLPA 1728
Query: 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801
ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND+WRIRQSSVELLGD
Sbjct: 1729 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDSWRIRQSSVELLGD 1788
Query: 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861
LLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIE+LGRDKRNEVLAALYMVR+DVSLSVR
Sbjct: 1789 LLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEILGRDKRNEVLAALYMVRADVSLSVR 1848
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL 1921
QAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLASSSSERRQVAGR+LGELVRKLGERVL
Sbjct: 1849 QAALHVWKTIVANTPKTLREIMPVLMDTLITSLASSSSERRQVAGRSLGELVRKLGERVL 1908
Query: 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
P IIPILS+GL DP++SRRQGVC+GLSEVMASAGKSQLL+FM+ELIPTIRTALCDS+ EV
Sbjct: 1909 PLIIPILSQGLNDPNSSRRQGVCVGLSEVMASAGKSQLLTFMNELIPTIRTALCDSVSEV 1968
Query: 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHIL 2041
RESAGLAFSTL+KSAGM AIDEIVPTLLHALEDD+TSDTALDGLKQILSVRT+AVLPHIL
Sbjct: 1969 RESAGLAFSTLYKSAGMLAIDEIVPTLLHALEDDETSDTALDGLKQILSVRTSAVLPHIL 2028
Query: 2042 PKLVHLPLSYVSLYLL 2057
PKLVH PLS + + L
Sbjct: 2029 PKLVHPPLSAFNAHAL 2044
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449477742|ref|XP_004155110.1| PREDICTED: LOW QUALITY PROTEIN: translational activator GCN1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3160 bits (8192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1582/2055 (76%), Positives = 1787/2055 (86%), Gaps = 14/2055 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDD 63
ADS D L SI+ VST STK+R RIFR+ + ++ +N+E E A LVDIIF T +YDD
Sbjct: 2 ADSLDLLNSISGLVSTPSTKKRIRIFRNQIPAIFKNSEAYEEFALQLVDIIFSTLFIYDD 61
Query: 64 RGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQF 123
RGSR+AVD+VI K L E+TFMK+FAAALVQ+MEKQSKF + VGCYRLLKWSCLL+ SQF
Sbjct: 62 RGSREAVDNVIIKALSEITFMKSFAAALVQSMEKQSKFHTRVGCYRLLKWSCLLV-YSQF 120
Query: 124 ATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARI 183
+T+SKNA R+ +AQA+L+HI+M+ SFRERRACKQTFFHL SQS DI K Y DE+ D RI
Sbjct: 121 STISKNAFSRLGSAQATLIHILMEGSFRERRACKQTFFHLLSQSADICKMYIDEVNDTRI 180
Query: 184 PYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHM 243
PYK +PEL+ LLLEF + P LFE +P FLD+YV +VLNA+EKP K LSE+F PLF HM
Sbjct: 181 PYKDAPELLTLLLEFSNTLPPLFENFKPTFLDLYVNSVLNAREKPTKNLSEAFRPLFGHM 240
Query: 244 SREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEG 303
+D QS+V+P+S+KMLKRNPEI+L+S+ L+SV LDLSKYA EILSVV Q RH DE
Sbjct: 241 LHDDLQSVVVPSSVKMLKRNPEIVLDSVSFCLQSVTLDLSKYAIEILSVVSPQARHTDEN 300
Query: 304 RKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNAT 363
R+ GAL I+ CL+ KSSNPD LEAMF +KAVIGGSEGRLAFPYQRIGM N +QEL++A
Sbjct: 301 RRIGALAIVRCLAGKSSNPDTLEAMFNNVKAVIGGSEGRLAFPYQRIGMFNMMQELAHAP 360
Query: 364 EGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLK 423
EGK + SLS +C FLLSCY+ EGNEEVKLAILSA+A+WA RS+D IQ +LLS F SGLK
Sbjct: 361 EGKRICSLSQLVCSFLLSCYRGEGNEEVKLAILSAIAAWAARSSDSIQPELLSLFTSGLK 420
Query: 424 EKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKI 483
EKE LRRGHLRCL VI N+D V ++SSLL PLIQLVKTGFTKAVQRLDG+YA L+VGKI
Sbjct: 421 EKETLRRGHLRCLHVISKNSDVVARISSLLVPLIQLVKTGFTKAVQRLDGMYALLLVGKI 480
Query: 484 AAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVL 543
A DIKAEETV+KEK+WSLVSQNEPS+VP +M SKLSV+DC+AC++L VLLVEHS RVL
Sbjct: 481 MAIDIKAEETVSKEKIWSLVSQNEPSIVPVSMASKLSVEDCIACLDLFEVLLVEHSRRVL 540
Query: 544 ETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKI 603
+TFSV+LL Q +L F CHPSWD+R+ A A K++ P LSEALLLEF+NFLS VGEK+
Sbjct: 541 DTFSVQLLSQPLLFFLCHPSWDVRRFACSAVGKLVAGAPELSEALLLEFANFLSTVGEKL 600
Query: 604 IISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTG 663
SK SDT++ +DSQ+P L S EV VK+L VI+ VA S ++ CSHHP +VGT
Sbjct: 601 HFSKISDTENSLDSQIPHLLSTEVLVKSLFVISRVATITTSRDSFLIMLCSHHPCLVGTA 660
Query: 664 KRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLM 723
KRD++W+R++KCL+A G + I VS ++ NLCK +LG GLM+ + ++AAI SL TLM
Sbjct: 661 KRDSIWKRVNKCLQAHGLSFIGTVSTNIENLCKGILGPQGLMNTAIDRREAAIYSLCTLM 720
Query: 724 SITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTK 783
+I PK+ Y FEKH ++ D + H+ LSENDIQ+F TPEGMLSSEQGVY+AE +++ +K
Sbjct: 721 TIAPKEVYTEFEKHFENTSDRHSHNMLSENDIQIFQTPEGMLSSEQGVYVAESISSSISK 780
Query: 784 QSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARE 843
+SK + SN+S +RE +RE SG GKKD GK KK DKGKTAKEEARE
Sbjct: 781 ESK------------KNSSSNNSIRREPTSRESSGLGKKDAGKFAKKPDKGKTAKEEARE 828
Query: 844 LLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGD 903
LLL EEASIREKV+ +Q+NLSLML ALGE+AI+N +FAHSQL S+VKFVDPLL+SPIV D
Sbjct: 829 LLLREEASIREKVRKIQKNLSLMLRALGELAISNTIFAHSQLSSMVKFVDPLLRSPIVND 888
Query: 904 VAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLF 962
VAYE LVKLSRC A PLCN ALDIATALR+I T+ H+ ++IPSVGEA N SL +
Sbjct: 889 VAYETLVKLSRCLAPPLCNSALDIATALRIIATDGDHLLLNMIPSVGEAEANGSSSLGIL 948
Query: 963 ERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPR 1022
ERIV L+V+C+SG LP+D+FTF+FPI+E+ILLS K+TGLHDDVL++LY HMDPLLPLPR
Sbjct: 949 ERIVTALSVACRSGSLPIDTFTFIFPIMEKILLSSKKTGLHDDVLRVLYLHMDPLLPLPR 1008
Query: 1023 LRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVK 1082
LRM+SVLYHVLGVVP++Q +IG ALNELCLGL+P+E+ASAL+GV+ KDVHVR+ACL AVK
Sbjct: 1009 LRMLSVLYHVLGVVPAFQGSIGPALNELCLGLRPDEIASALNGVFAKDVHVRIACLKAVK 1068
Query: 1083 CIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHS 1142
CIPAV++RSLPEN+EV+TS+W+A+HDPEKSVAE AEDIWDRYGYDFGTDYSGLFKALSH+
Sbjct: 1069 CIPAVASRSLPENVEVATSIWMALHDPEKSVAEIAEDIWDRYGYDFGTDYSGLFKALSHA 1128
Query: 1143 NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
NYNVRL+A+EALA LDEYPD+IQ SLSTLFS+YI D GG VDAGW GRQGIALAL+
Sbjct: 1129 NYNVRLSASEALAAILDEYPDTIQESLSTLFSMYIHDASSGGGTVDAGWFGRQGIALALY 1188
Query: 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY 1262
SAADVLRTKDLPV+MTFLISRAL D N+DVRGRM+NAGIMIIDKHGR++VSLLFPIFENY
Sbjct: 1189 SAADVLRTKDLPVVMTFLISRALGDPNSDVRGRMINAGIMIIDKHGRESVSLLFPIFENY 1248
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSS 1322
LNKKASDEEKYDLVREGVVIFTGALAKHLA +DPK+ AVVDKLLDVLNTPSEAVQRAVS+
Sbjct: 1249 LNKKASDEEKYDLVREGVVIFTGALAKHLAMNDPKIDAVVDKLLDVLNTPSEAVQRAVST 1308
Query: 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382
CLSPLMQS QD+ P LVSRLLDQLMKS KYGERRG AFGLAGVVKGFGI+SLKKYGIA+
Sbjct: 1309 CLSPLMQSKQDDGPALVSRLLDQLMKSXKYGERRGVAFGLAGVVKGFGITSLKKYGIASV 1368
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
LR+ LADRNSAK REGALLAFECLCE LGRLFEPYVI MLPLLLV+FSDQVVAVREAAEC
Sbjct: 1369 LRDALADRNSAKCREGALLAFECLCETLGRLFEPYVILMLPLLLVSFSDQVVAVREAAEC 1428
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQL+AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1429 AARAMMSQLTAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1488
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTDTHPKVQSA QTALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQ
Sbjct: 1489 KLTEVLTDTHPKVQSAAQTALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQ 1548
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTF+N++DAPSLALLVPIVHRGLRERSAETKKK AQI GNMCSLVTEPKDMIPY GLLLP
Sbjct: 1549 TTFINSIDAPSLALLVPIVHRGLRERSAETKKKXAQIAGNMCSLVTEPKDMIPYTGLLLP 1608
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL D LKS+NSNVERSGAAQGL
Sbjct: 1609 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWLFDTLKSENSNVERSGAAQGL 1668
Query: 1683 SEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1742
SEVLAALG YF+H+LPDIIRNCSHQRA VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI
Sbjct: 1669 SEVLAALGIDYFDHVLPDIIRNCSHQRAPVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1728
Query: 1743 LDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LDGLADENESVRDAALGAGHVLVEHYA TSLPLLLPAVEDGIFND+WRIRQSSVELLGDL
Sbjct: 1729 LDGLADENESVRDAALGAGHVLVEHYAATSLPLLLPAVEDGIFNDSWRIRQSSVELLGDL 1788
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ 1862
LFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR KR+E+L+ALYMVR+DVS+SVRQ
Sbjct: 1789 LFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGRGKRDEILSALYMVRTDVSISVRQ 1848
Query: 1863 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922
AALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS SSERRQVAGRALGELVRKLGERVLP
Sbjct: 1849 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASLSSERRQVAGRALGELVRKLGERVLP 1908
Query: 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982
IIPILS+GLKDP+ASRRQGVCIGLSEVM SAGKSQLLSFMDELIPTIRTALCDS+ EVR
Sbjct: 1909 LIIPILSQGLKDPNASRRQGVCIGLSEVMTSAGKSQLLSFMDELIPTIRTALCDSMPEVR 1968
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042
ESAGLAFSTL+KSAGMQAIDEI+PTLLHALED+ TS+TALDGLKQILSVRTTAVLPHILP
Sbjct: 1969 ESAGLAFSTLYKSAGMQAIDEIIPTLLHALEDEDTSETALDGLKQILSVRTTAVLPHILP 2028
Query: 2043 KLVHLPLSYVSLYLL 2057
KLVH PLS + + L
Sbjct: 2029 KLVHTPLSAFNAHAL 2043
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449470206|ref|XP_004152809.1| PREDICTED: translational activator GCN1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3153 bits (8175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1582/2055 (76%), Positives = 1788/2055 (87%), Gaps = 14/2055 (0%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDD 63
ADS D L SI+ VST STK+R RIF + + ++ +N+E E A LVDIIF T +YDD
Sbjct: 2 ADSLDLLNSISGLVSTPSTKKRIRIFLNQIPAIFKNSEAYEEFALQLVDIIFSTLFIYDD 61
Query: 64 RGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQF 123
RGSR+AVD+VI K L E+TFMK+FAAALVQ+MEKQSKF + VGCYRLLKWSCLL+ SQF
Sbjct: 62 RGSREAVDNVIIKALSEITFMKSFAAALVQSMEKQSKFHTRVGCYRLLKWSCLLV-YSQF 120
Query: 124 ATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARI 183
+T+SKNA R+ +AQA+L+HI+M+ SFRERRACKQTFFHL SQS DI K Y DE+ D RI
Sbjct: 121 STISKNAFSRLGSAQATLIHILMEGSFRERRACKQTFFHLLSQSADICKMYIDEVNDTRI 180
Query: 184 PYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHM 243
PYK +PEL+ LLLEF + P LFE +P FLD+YV +VLNA+EKP K LSE+F PLF HM
Sbjct: 181 PYKDAPELLTLLLEFSNTLPPLFENFKPTFLDLYVNSVLNAREKPTKNLSEAFRPLFGHM 240
Query: 244 SREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEG 303
+D QS+V+P+S+KMLKRNPEI+L+S+ L+SV LDLSKYA EILSVV Q RH DE
Sbjct: 241 LHDDLQSVVVPSSVKMLKRNPEIVLDSVSFCLQSVTLDLSKYAIEILSVVSPQARHTDEN 300
Query: 304 RKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNAT 363
R+ GAL I+ CL+ KSSNPD LEAMF +KAVIGGSEGRLAFPYQRIGM N +QEL++A
Sbjct: 301 RRIGALAIVRCLAGKSSNPDTLEAMFNNVKAVIGGSEGRLAFPYQRIGMFNMMQELAHAP 360
Query: 364 EGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLK 423
EGK + SLS +C FLLSCY+ EGNEEVKLAILSA+A+WA RS+D IQ +LLS F SGLK
Sbjct: 361 EGKRICSLSQLVCSFLLSCYRGEGNEEVKLAILSAIAAWAARSSDSIQPELLSLFTSGLK 420
Query: 424 EKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKI 483
EKE LRRGHLRCL VI N+D V ++SSLL PLIQLVKTGFTKAVQRLDG+YA L+VGKI
Sbjct: 421 EKETLRRGHLRCLHVISKNSDVVARISSLLVPLIQLVKTGFTKAVQRLDGMYALLLVGKI 480
Query: 484 AAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVL 543
A DIKAEETV+KEK+WSLVSQNEPS+VP +M SKLSV+DC+AC++L VLLVEHS RVL
Sbjct: 481 MAIDIKAEETVSKEKIWSLVSQNEPSIVPVSMASKLSVEDCIACLDLFEVLLVEHSRRVL 540
Query: 544 ETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKI 603
+TFSV+LL Q +L F CHPSWD+R+ A A K++ P LSEALLLEF+NFLS VGEK+
Sbjct: 541 DTFSVQLLSQPLLFFLCHPSWDVRRFACSAVGKLVAGAPELSEALLLEFANFLSTVGEKL 600
Query: 604 IISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTG 663
SK SDT++ +DSQ+P L S EV VK+L VI+ VA S ++ CSHHP +VGT
Sbjct: 601 HFSKISDTENSLDSQIPHLLSTEVLVKSLFVISRVATITTSRDSFLIMLCSHHPCLVGTA 660
Query: 664 KRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLM 723
KRD++W+R++KCL+A G + I VS ++ NLCK +LG GLM+ + ++AAI SL TLM
Sbjct: 661 KRDSIWKRVNKCLQAHGLSFIGTVSTNIENLCKGILGPQGLMNTAIDRREAAIYSLCTLM 720
Query: 724 SITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTK 783
+I PK+ Y FEKH ++ D + H+ LSENDIQ+F TPEGMLSSEQGVY+AE +++ +K
Sbjct: 721 TIAPKEVYTEFEKHFENTSDRHSHNMLSENDIQIFQTPEGMLSSEQGVYVAESISSSISK 780
Query: 784 QSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARE 843
+SK + SN+S +RE +RE SG GKKD GK KK DKGKTAKEEARE
Sbjct: 781 ESK------------KNSSSNNSIRREPTSRESSGLGKKDAGKFAKKPDKGKTAKEEARE 828
Query: 844 LLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGD 903
LLL EEASIREKV+ +Q+NLSLML ALGE+AI+N +FAHSQL S+VKFVDPLL+SPIV D
Sbjct: 829 LLLREEASIREKVRKIQKNLSLMLRALGELAISNTIFAHSQLSSMVKFVDPLLRSPIVND 888
Query: 904 VAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKN-KESLCLF 962
VAYE LVKLSRC A PLCN ALDIATALR+I T+ H+ ++IPSVGEA N SL +
Sbjct: 889 VAYETLVKLSRCLAPPLCNSALDIATALRIIATDGDHLLLNMIPSVGEAEANGSSSLGIL 948
Query: 963 ERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPR 1022
ERIV L+V+C+SG LP+D+FTF+FPI+E+ILLS K+TGLHDDVL++LY HMDPLLPLPR
Sbjct: 949 ERIVTALSVACRSGSLPIDTFTFIFPIMEKILLSSKKTGLHDDVLRVLYLHMDPLLPLPR 1008
Query: 1023 LRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVK 1082
LRM+SVLYHVLGVVP++Q +IG ALNELCLGL+P+E+ASAL+GV+ KDVHVR+ACL AVK
Sbjct: 1009 LRMLSVLYHVLGVVPAFQGSIGPALNELCLGLRPDEIASALNGVFAKDVHVRIACLKAVK 1068
Query: 1083 CIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHS 1142
CIPAV++RSLPEN+EV+TS+W+A+HDPEKSVAE AEDIWDRYGYDFGTDYSGLFKALSH+
Sbjct: 1069 CIPAVASRSLPENVEVATSIWMALHDPEKSVAEIAEDIWDRYGYDFGTDYSGLFKALSHA 1128
Query: 1143 NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
NYNVRL+A+EALA LDEYPD+IQ SLSTLFS+YI D GG VDAGW GRQGIALAL+
Sbjct: 1129 NYNVRLSASEALAAILDEYPDTIQESLSTLFSMYIHDASSGGGTVDAGWFGRQGIALALY 1188
Query: 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY 1262
SAADVLRTKDLPV+MTFLISRAL D N+DVRGRM+NAGIMIIDKHGR++VSLLFPIFENY
Sbjct: 1189 SAADVLRTKDLPVVMTFLISRALGDPNSDVRGRMINAGIMIIDKHGRESVSLLFPIFENY 1248
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSS 1322
LNKKASDEEKYDLVREGVVIFTGALAKHLA +DPK+ AVVDKLLDVLNTPSEAVQRAVS+
Sbjct: 1249 LNKKASDEEKYDLVREGVVIFTGALAKHLAMNDPKIDAVVDKLLDVLNTPSEAVQRAVST 1308
Query: 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382
CLSPLMQS QD+ P LVSRLLDQLMKS+KYGER GAAFGLAGVVKGFGI+SLKKYGIA+
Sbjct: 1309 CLSPLMQSKQDDGPALVSRLLDQLMKSEKYGERCGAAFGLAGVVKGFGITSLKKYGIASV 1368
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
LR+ LADRNSAK REGALLAFECLCE LGRLFEPYVI MLPLLLV+FSDQVVAVREAAEC
Sbjct: 1369 LRDALADRNSAKCREGALLAFECLCETLGRLFEPYVILMLPLLLVSFSDQVVAVREAAEC 1428
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQL+AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1429 AARAMMSQLTAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1488
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTDTHPKVQSA QTALQQVGSVIKNPEI++LVPTLLMGLTDPND+TKYSLDILLQ
Sbjct: 1489 KLTEVLTDTHPKVQSAAQTALQQVGSVIKNPEISALVPTLLMGLTDPNDYTKYSLDILLQ 1548
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTF+N++DAPSLALLVPIVHRGLRERSAETKKKAAQI GNMCSLVTEPKDMIPY GLLLP
Sbjct: 1549 TTFINSIDAPSLALLVPIVHRGLRERSAETKKKAAQIAGNMCSLVTEPKDMIPYTGLLLP 1608
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV WL D LKS+NSNVERSGAAQGL
Sbjct: 1609 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVPWLFDTLKSENSNVERSGAAQGL 1668
Query: 1683 SEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1742
SEVLAALG YF+H+LPDIIRNCSHQRA VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI
Sbjct: 1669 SEVLAALGIDYFDHVLPDIIRNCSHQRAPVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1728
Query: 1743 LDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
LDGLADENESVRDAALGAGHVLVEHYA TSLPLLLPAVEDGIFND+WRIRQSSVELLGDL
Sbjct: 1729 LDGLADENESVRDAALGAGHVLVEHYAATSLPLLLPAVEDGIFNDSWRIRQSSVELLGDL 1788
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQ 1862
LFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR KR+E+L+ALYMVR+DVS+SVRQ
Sbjct: 1789 LFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGRGKRDEILSALYMVRTDVSISVRQ 1848
Query: 1863 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP 1922
AALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS SSERRQVAGRALGELVRKLGERVLP
Sbjct: 1849 AALHVWKTIVANTPKTLKEIMPVLMNTLISSLASLSSERRQVAGRALGELVRKLGERVLP 1908
Query: 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVR 1982
IIPILS+GLKDP+ASRRQGVCIGLSEVM SAGKSQLLSFMDELIPTIRTALCDS+ EVR
Sbjct: 1909 LIIPILSQGLKDPNASRRQGVCIGLSEVMTSAGKSQLLSFMDELIPTIRTALCDSMPEVR 1968
Query: 1983 ESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILP 2042
ESAGLAFSTL+KSAGMQAIDEI+PTLLHALED+ TS+TALDGLKQILSVRTTAVLPHILP
Sbjct: 1969 ESAGLAFSTLYKSAGMQAIDEIIPTLLHALEDEDTSETALDGLKQILSVRTTAVLPHILP 2028
Query: 2043 KLVHLPLSYVSLYLL 2057
KLVH PLS + + L
Sbjct: 2029 KLVHTPLSAFNAHAL 2043
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562017|ref|XP_002522017.1| Translational activator GCN1, putative [Ricinus communis] gi|223538821|gb|EEF40421.1| Translational activator GCN1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3149 bits (8165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1573/1964 (80%), Positives = 1720/1964 (87%), Gaps = 78/1964 (3%)
Query: 95 MEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHIVMQRSFRERR 154
MEKQSKF SHVGCYRLL WSCLLL +SQFA VSKNA+CRVAAAQAS L V+ RSFRERR
Sbjct: 1 MEKQSKFHSHVGCYRLLNWSCLLLCQSQFAAVSKNAVCRVAAAQASTLSTVIHRSFRERR 60
Query: 155 ACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFL 214
ACK+ FFHLFSQSP IYK YT+E KDARIPYK SPEL+ LLLEF S + S FE+ +P+FL
Sbjct: 61 ACKRLFFHLFSQSPHIYKIYTEEFKDARIPYKDSPELMWLLLEF-SIASSSFEQVKPVFL 119
Query: 215 DIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNPEIILESIGIL 274
D YVKA+LNAKEKP LSESF PLF H+S EDFQ++V+P++ KMLKRNPEI+LES+GIL
Sbjct: 120 DTYVKAILNAKEKPATRLSESFQPLFMHLSHEDFQNVVVPSAAKMLKRNPEIVLESVGIL 179
Query: 275 LKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKA 334
LK V LDLSKYA+EILSVVL Q RH DE R+ AL I+ CLS+KSSNPDALEAMF A+KA
Sbjct: 180 LKFVKLDLSKYASEILSVVLPQARHTDESRRLTALAIVRCLSQKSSNPDALEAMFTAVKA 239
Query: 335 VIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLA 394
VIGGSEGRL FPYQR+GM NALQELS A EGKYL+ LS TIC FLLSCYK+EGNEEVKLA
Sbjct: 240 VIGGSEGRLQFPYQRVGMFNALQELSYAPEGKYLSGLSCTICSFLLSCYKNEGNEEVKLA 299
Query: 395 ILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLG 454
+LSA+ASWA RSAD +Q D++SF ASGLKEKE LRRGHLRCLRVIC N DA+LQ+SSLLG
Sbjct: 300 VLSAIASWAARSADAVQPDIVSFIASGLKEKEVLRRGHLRCLRVICKNNDAILQISSLLG 359
Query: 455 PLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTA 514
PLIQLVKTGFTKAVQRLDG+YA LI GKIA+ADIKAEET+ KEK+WSL++QNEPSLV +
Sbjct: 360 PLIQLVKTGFTKAVQRLDGVYALLIAGKIASADIKAEETLAKEKIWSLIAQNEPSLVQIS 419
Query: 515 MISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDAT 574
M SKLS +D MACV+LL VLL+EHS R+LE FSV+LLLQL++ CHP+W++RKM+HD+T
Sbjct: 420 MASKLSPEDSMACVDLLEVLLIEHSRRMLEAFSVRLLLQLIVFLLCHPNWEVRKMSHDST 479
Query: 575 RKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
R+IITSVP LSE L+ EF+NFLS V EK+ TSDTD +D QVPFLPSVEV VK L+V
Sbjct: 480 RRIITSVPQLSEVLITEFTNFLSSVAEKVFSLNTSDTDTSLDPQVPFLPSVEVLVKALIV 539
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNL 694
I+S LA PS S +++FCSHHP I+GT +DAVW
Sbjct: 540 ISSATLATSPSISTKILFCSHHPCIIGTANKDAVW------------------------- 574
Query: 695 CKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSEND 754
K LLG +GLMS N+ EQQAAINSLSTLMSITP DTY+ FEKHL +L D Y HD LSEND
Sbjct: 575 -KGLLGPMGLMSLNVFEQQAAINSLSTLMSITPSDTYMEFEKHLNNLEDRYSHDMLSEND 633
Query: 755 IQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANR 814
I++F+TPEGMLSSEQGVY+AE +A+KNT+Q+KGRFR+ SNHSAKRE R
Sbjct: 634 IRIFHTPEGMLSSEQGVYVAESIASKNTRQAKGRFRI-----------SNHSAKREPTGR 682
Query: 815 EVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMA 874
E +G G+KD GK KK DKGKTAKEEARELLL EE SIREKVQ VQ NLSL+L ALGEMA
Sbjct: 683 EATGVGRKDAGKLAKKTDKGKTAKEEARELLLKEEESIREKVQDVQNNLSLILRALGEMA 742
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
++NPVFAHSQLPSLV+FVD LL+SPIV DVA+E LVKL+RCTA PLCNWALDIATAL LI
Sbjct: 743 VSNPVFAHSQLPSLVRFVDSLLRSPIVSDVAFETLVKLARCTAPPLCNWALDIATALCLI 802
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
T EV V +LIP+VG+ N + SL LFERI+ GL+VSCKSGPLPVDSFTFVFP
Sbjct: 803 ATAEVSVLPNLIPTVGKGETNERPSLGLFERIIAGLSVSCKSGPLPVDSFTFVFP----- 857
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLG 1053
LYHVLGVVP+YQA++G+ALNELCLG
Sbjct: 858 ----------------------------------ALYHVLGVVPAYQASVGAALNELCLG 883
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
L+ +EVASAL+GVY KDVHVRMACLNA+KCIPAVS+RSLP+N+E++TS+WIA+HDPEK +
Sbjct: 884 LKADEVASALYGVYAKDVHVRMACLNAIKCIPAVSSRSLPQNVEIATSIWIALHDPEKLI 943
Query: 1114 AEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLF 1173
AEAAEDIWDRYG DFGTDYSGLFKALSH NYNVR+A AEALA ALDE PDSIQ SLSTLF
Sbjct: 944 AEAAEDIWDRYGCDFGTDYSGLFKALSHINYNVRIATAEALAAALDENPDSIQESLSTLF 1003
Query: 1174 SLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVR 1233
SLYIRD G DNVDAGW+GRQGIALALHSAADVLRTKDLPV+MTFLISRALAD NADVR
Sbjct: 1004 SLYIRDATFGEDNVDAGWIGRQGIALALHSAADVLRTKDLPVVMTFLISRALADPNADVR 1063
Query: 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293
GRM+NAGIMIIDKHG++NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK
Sbjct: 1064 GRMINAGIMIIDKHGKENVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1123
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
DDPKVHAVV+KLLDVLNTPSEAVQRAVS+CLSPLMQS QD+A +LVSR+LDQLMKSDKYG
Sbjct: 1124 DDPKVHAVVEKLLDVLNTPSEAVQRAVSTCLSPLMQSKQDDAASLVSRVLDQLMKSDKYG 1183
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ERRGAAFGLAG+VKGFGISSLK YGI A LREGL DRNSAK REGALLAFECLCEKLG+L
Sbjct: 1184 ERRGAAFGLAGIVKGFGISSLKNYGIIAALREGLVDRNSAKSREGALLAFECLCEKLGKL 1243
Query: 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYVIQMLPLLLV+FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR
Sbjct: 1244 FEPYVIQMLPLLLVSFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1303
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TKQSSVQLLGAMAYCAP+QLSQCLP IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP
Sbjct: 1304 TKQSSVQLLGAMAYCAPRQLSQCLPTIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1363
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI+SLVPTLLM LTDPND+TKYSLDILLQTTF+N++DAPSLALLVPIVHRGLRERSAETK
Sbjct: 1364 EISSLVPTLLMALTDPNDYTKYSLDILLQTTFINSIDAPSLALLVPIVHRGLRERSAETK 1423
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
KKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE
Sbjct: 1424 KKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1483
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVR 1713
NFPDLV WL D LKSD SNVERSGAAQGLSEVLAALGT YFEH+LPD+IRNCSHQRASVR
Sbjct: 1484 NFPDLVPWLFDTLKSDTSNVERSGAAQGLSEVLAALGTKYFEHVLPDLIRNCSHQRASVR 1543
Query: 1714 DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1773
DGYLTLFK+LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL
Sbjct: 1544 DGYLTLFKFLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL 1603
Query: 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833
PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK+LLEGGSDDEGASTEAHGRAI
Sbjct: 1604 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKSLLEGGSDDEGASTEAHGRAI 1663
Query: 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1893
IEVLGR+KRNEVLAALYMVR+D+SLSVRQAALHVWKTIVANTPKTLKEIMP+LMNTLISS
Sbjct: 1664 IEVLGREKRNEVLAALYMVRTDMSLSVRQAALHVWKTIVANTPKTLKEIMPILMNTLISS 1723
Query: 1894 LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953
LASSSSERRQVAGRALGELVRKLGERVLP IIPILS+GL++P ASRRQGVCIGLSEVMAS
Sbjct: 1724 LASSSSERRQVAGRALGELVRKLGERVLPLIIPILSQGLRNPDASRRQGVCIGLSEVMAS 1783
Query: 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
AGKSQLL+FMDELIPTIRTALCDS+LEVRESAGLAFSTL+KSAGMQAIDEIVPTLLHALE
Sbjct: 1784 AGKSQLLNFMDELIPTIRTALCDSMLEVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALE 1843
Query: 2014 DDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSYVSLYLL 2057
DD+TSDTALDGLKQILSVRT AVLPHILPKLVHLPLS + + L
Sbjct: 1844 DDETSDTALDGLKQILSVRTAAVLPHILPKLVHLPLSAFNAHAL 1887
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254318|ref|NP_176659.6| protein ILITYHIA [Arabidopsis thaliana] gi|332196168|gb|AEE34289.1| protein ILITYHIA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3091 bits (8013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1524/2034 (74%), Positives = 1753/2034 (86%), Gaps = 18/2034 (0%)
Query: 25 RQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTFM 84
R RIFRHD+ +++N++M+ +IA +VD+IF+T ++YDDR SRKAVDD+I KGLG VTFM
Sbjct: 23 RLRIFRHDIPEILQNSDMTSDIAPVIVDMIFQTLAIYDDRASRKAVDDLIVKGLGNVTFM 82
Query: 85 KTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHI 144
KTFAA LVQ MEKQ KF CYRLL WSCLLL KSQFATVSKNA RVA+ QASLL I
Sbjct: 83 KTFAAMLVQVMEKQLKFCFDTVCYRLLIWSCLLLEKSQFATVSKNAFVRVASTQASLLRI 142
Query: 145 VMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPS 204
+M+ SFR RRACK+ FHLFSQS IY Y DE+K +RIPYK SPEL+ LLLEF SP+
Sbjct: 143 IMESSFRMRRACKRFMFHLFSQSQAIYSLYMDEVKGSRIPYKDSPELLGLLLEFSCSSPA 202
Query: 205 LFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNP 264
LFE+ + IF+DIYVK VLN++EK LS F PL +S E+FQ+++LPA++KMLKRNP
Sbjct: 203 LFEQSKAIFVDIYVKDVLNSREKQKPNLSNCFKPLLQRLSHEEFQTVILPAAVKMLKRNP 262
Query: 265 EIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDA 324
EI+LES+G LL +VN+DLSKYA E+L V+L Q RH DE R+ GAL+++ CLSEKSSNPD
Sbjct: 263 EIVLESVGFLLANVNIDLSKYALELLPVILPQARHTDEDRRLGALSMVMCLSEKSSNPDT 322
Query: 325 LEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYK 384
+EAMF ++KA+IGGSEGRL P+QRIGM+NA+QEL++A EGKY+ SLS TIC FL++CYK
Sbjct: 323 IEAMFASVKAIIGGSEGRLQSPHQRIGMLNAVQELASAPEGKYIGSLSRTICSFLIACYK 382
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTD 444
DEGNE+VKL+ILSAVASWA RS+ IQ +L+SF A+GLKEKEALRRGHLRC+R+IC N D
Sbjct: 383 DEGNEDVKLSILSAVASWASRSSVAIQPNLVSFIAAGLKEKEALRRGHLRCVRIICRNPD 442
Query: 445 AVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVS 504
+ Q+S LL PLIQLVKTGFTKAVQRLDGIYA LIV KIAA DIKAE+T+ KEKLW+L+S
Sbjct: 443 TISQISDLLSPLIQLVKTGFTKAVQRLDGIYALLIVSKIAACDIKAEDTMVKEKLWTLIS 502
Query: 505 QNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSW 564
QNEPSLV + SKLS DDC+ CV+LL VLLVEHS RVLE FS+K L QL+L CHPSW
Sbjct: 503 QNEPSLVQITLASKLSSDDCVVCVDLLEVLLVEHSSRVLEAFSLKSLSQLLLFLLCHPSW 562
Query: 565 DIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPS 624
++RK A+++ KI + L+ LL EFS+FLS+ G++I+ S+TSD D+ D Q PF+PS
Sbjct: 563 NVRKTAYNSVTKIFLATSQLATTLLDEFSDFLSITGDQIVSSRTSDADNPADHQAPFVPS 622
Query: 625 VEVQVKTLLVIASVALARGPSAS-ARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNV 683
VEV VK L+VI+S A+A PS+ R IFCSHHPSIVGTGKRDAVW+RL KCL+ GF+V
Sbjct: 623 VEVLVKALIVISSAAVAGPPSSWIVRAIFCSHHPSIVGTGKRDAVWKRLQKCLKTCGFDV 682
Query: 684 IEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPD 743
+S + ++CK LLG +GL SA EQQAA+ SLST+MS+ P+DT+ F+ HL+DLPD
Sbjct: 683 ATFLSTNGESVCKSLLGPMGLTSAKTPEQQAAVYSLSTMMSLAPEDTFTVFKMHLQDLPD 742
Query: 744 CYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
HD LSE DI++F+TPEGML SEQGVY+A+ + AK TKQ S
Sbjct: 743 RLSHDMLSETDIKIFHTPEGMLLSEQGVYVAQTIGAKYTKQEPS---------------S 787
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNL 863
NHS K+ A+RE + +G++D K TKKADKGKTAKEEAREL+L EEAS RE V +Q++L
Sbjct: 788 NHSLKKGLASRETANSGRRDTAKLTKKADKGKTAKEEARELMLKEEASTRENVHRIQKSL 847
Query: 864 SLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNW 923
SL+L ALGEM +ANPVF HSQLP L F+DPLL+SPIV A+E LVKL+RCT PLCNW
Sbjct: 848 SLVLHALGEMGLANPVFCHSQLPFLATFLDPLLRSPIVSAAAFENLVKLARCTVQPLCNW 907
Query: 924 ALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF 983
AL+I+TALRLI +EV D PSV +A K E L FERIVNGL++SCKSGPLPVD+F
Sbjct: 908 ALEISTALRLIAIDEVDTSFDFRPSVDKAGKTYEGL--FERIVNGLSISCKSGPLPVDTF 965
Query: 984 TFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAI 1043
TF+FPI+ERILLS KRT LHDDVLQ+LY H+DP+LPLPRLRMISVLYHVLGVVP+YQA++
Sbjct: 966 TFIFPILERILLSSKRTKLHDDVLQILYMHLDPMLPLPRLRMISVLYHVLGVVPAYQASV 1025
Query: 1044 GSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW 1103
G ALNELCLGLQ ++VA+AL+GVY+KDVHVR+ACLNAVKCIPAVS SLP+N++++T++W
Sbjct: 1026 GPALNELCLGLQADDVANALYGVYSKDVHVRLACLNAVKCIPAVSKCSLPQNVKIATNIW 1085
Query: 1104 IAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPD 1163
IA+HDPEKSVAE+A+D+W RYG+D GTDYSG+FKALSH N NVRLAAAEALA AL E P
Sbjct: 1086 IALHDPEKSVAESADDLWARYGHDLGTDYSGIFKALSHINLNVRLAAAEALADALHESPS 1145
Query: 1164 SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISR 1223
SIQ SLSTLFSLYIRD G D DAGW+GRQGIALAL SAADVL TKDLP +MTFLISR
Sbjct: 1146 SIQLSLSTLFSLYIRDATSGEDVFDAGWIGRQGIALALQSAADVLTTKDLPAVMTFLISR 1205
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
ALAD N DVRG+M+NAGIMIIDKHG++NVSLLFPIFENYLNK+ASDEE+YDLVREGVVIF
Sbjct: 1206 ALADPNTDVRGKMINAGIMIIDKHGKENVSLLFPIFENYLNKEASDEEEYDLVREGVVIF 1265
Query: 1284 TGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLL 1343
TGALAKHLA+DDPKVH VV+KLL+VLNTPSE+VQRAVS+CLSPL+ S Q+EAP L RLL
Sbjct: 1266 TGALAKHLARDDPKVHNVVEKLLEVLNTPSESVQRAVSTCLSPLVLSKQEEAPALFLRLL 1325
Query: 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
D+LMKSDKYGERRGAAFGLAGVV GFGISSLKKYG+ TL+E L DRNSAKRREGALLAF
Sbjct: 1326 DKLMKSDKYGERRGAAFGLAGVVMGFGISSLKKYGLIVTLQEALIDRNSAKRREGALLAF 1385
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSL 1463
ECLCEKLG+LFEPYVI+MLPLLLV+FSDQV AVREAAECAARAMMSQLSA GVKLVLPSL
Sbjct: 1386 ECLCEKLGKLFEPYVIKMLPLLLVSFSDQVGAVREAAECAARAMMSQLSAYGVKLVLPSL 1445
Query: 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523
LKGLEDKAWRTKQSSVQLLGAMA+CAPQQLSQCLP++VPKLTEVLTDTHPKVQSAGQ AL
Sbjct: 1446 LKGLEDKAWRTKQSSVQLLGAMAFCAPQQLSQCLPRVVPKLTEVLTDTHPKVQSAGQLAL 1505
Query: 1524 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583
QQVGSVIKNPEI+SLVPTLL+ LTDPN++T+++LD LLQTTFVN+VDAPSLALLVPIVHR
Sbjct: 1506 QQVGSVIKNPEISSLVPTLLLALTDPNEYTRHALDTLLQTTFVNSVDAPSLALLVPIVHR 1565
Query: 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643
GLRERS+ETKKKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA+
Sbjct: 1566 GLRERSSETKKKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAV 1625
Query: 1644 GSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703
GSLIRGMGE+NFPDLV WL + LKSD SNVER GAAQGLSEV+AALGT YFE+ILPD+IR
Sbjct: 1626 GSLIRGMGEDNFPDLVPWLFETLKSDTSNVERYGAAQGLSEVIAALGTDYFENILPDLIR 1685
Query: 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763
+CSHQ+ASVRDGYLTLFK+LPRSLG QFQ YLQ VLPAILDGLADENESVRDAALGAGHV
Sbjct: 1686 HCSHQKASVRDGYLTLFKFLPRSLGAQFQKYLQLVLPAILDGLADENESVRDAALGAGHV 1745
Query: 1764 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1823
LVEH+ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG
Sbjct: 1746 LVEHHATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1805
Query: 1824 ASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM 1883
ASTEA GRAII++LG DKRNEVLAALYMVR+DVSLSVRQAALHVWKTIVANTPKTLKEIM
Sbjct: 1806 ASTEAQGRAIIDILGMDKRNEVLAALYMVRTDVSLSVRQAALHVWKTIVANTPKTLKEIM 1865
Query: 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGV 1943
P+LM+TLISSLAS SSERRQVAGR+LGELVRKLGERVLP IIPILS+GLKDP +RQGV
Sbjct: 1866 PILMSTLISSLASPSSERRQVAGRSLGELVRKLGERVLPLIIPILSKGLKDPDVDKRQGV 1925
Query: 1944 CIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDE 2003
CIGL+EVMASAG+SQLLSFMD+LIPTIRTALCDS LEVRESAGLAFSTL+KSAG+QA+DE
Sbjct: 1926 CIGLNEVMASAGRSQLLSFMDQLIPTIRTALCDSALEVRESAGLAFSTLYKSAGLQAMDE 1985
Query: 2004 IVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSYVSLYLL 2057
I+PTLL ALEDD+ S TALDGLKQI+SVRT AVLPHILPKLVHLPLS ++ + L
Sbjct: 1986 IIPTLLEALEDDEMSTTALDGLKQIISVRTAAVLPHILPKLVHLPLSALNAHAL 2039
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512395|ref|XP_003626486.1| Translational activator GCN1 [Medicago truncatula] gi|355501501|gb|AES82704.1| Translational activator GCN1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 3078 bits (7979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1593/2178 (73%), Positives = 1809/2178 (83%), Gaps = 124/2178 (5%)
Query: 4 ADSSDTLISIAASVSTSSTKRRQRIFRHDVTSLIRNT----EMSPEIASFLVDIIFKTFS 59
A+S +L+S++ VSTSST +R RIF+ +V + + ++ EMS E+AS L DIIF+T +
Sbjct: 2 AESLQSLVSLSELVSTSSTNQRLRIFQREVPAFLNSSSTSDEMSTELASLLTDIIFRTVA 61
Query: 60 VYDDRGSRKAVDDVIEKGLGEVTFMKTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLS 119
+YDDR SRKAVDDVI K L FMKTFAAALVQ+MEKQ K QSHVGCYRLL WSCLLLS
Sbjct: 62 IYDDRRSRKAVDDVIVKSLSGTVFMKTFAAALVQSMEKQLKSQSHVGCYRLLSWSCLLLS 121
Query: 120 KSQFATVSKNALCRVAAAQASLLHIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELK 179
KS+F+TVSKNALCRVA+ QASLL++V +RSFRERRACK+ FHLF + PDIYK Y E+K
Sbjct: 122 KSKFSTVSKNALCRVASGQASLLNLVWRRSFRERRACKKKIFHLFKELPDIYKVYVQEVK 181
Query: 180 DARIPYKHSPELICLLLEFLSKSPSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPL 239
+ IPYK SPEL+ LLLEF ++S SLF + + FLDIYV A+L+AK KP K L E+F PL
Sbjct: 182 NGSIPYKDSPELLLLLLEFSTRSSSLFGEFKSAFLDIYVNAILSAKAKPGKSLIEAFHPL 241
Query: 240 FTHMSREDFQSIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRH 299
+ MS EDF +IVLPA++KMLKRNPEI+LES+GILLKSV LDLSKYA EILSVVL Q RH
Sbjct: 242 YLQMSHEDFGTIVLPAAVKMLKRNPEIVLESVGILLKSVKLDLSKYAAEILSVVLVQARH 301
Query: 300 ADEGRKTGALTIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQEL 359
ADEGR+ AL I+ LS+KSSNPDAL+ MF AIK+VI GSEGRLAFPYQR+GMVNA+QEL
Sbjct: 302 ADEGRRDVALDIVKNLSQKSSNPDALDIMFNAIKSVIKGSEGRLAFPYQRVGMVNAIQEL 361
Query: 360 SNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFA 419
SNA +GKYL +LS TIC FLLSCYKD+GNEEVK+A LSA+ASWA +S +IIQ L+SFFA
Sbjct: 362 SNAPDGKYLINLSQTICDFLLSCYKDDGNEEVKIATLSAIASWADKSTNIIQESLVSFFA 421
Query: 420 SGLKEKEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLI 479
SGLKEKE LRRG LR LR IC N DAVL++S LL PL+QLVKTGFTKAVQRLDGIYA L+
Sbjct: 422 SGLKEKEILRRGFLRSLRAICKNADAVLKMSPLLVPLVQLVKTGFTKAVQRLDGIYALLL 481
Query: 480 VGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHS 539
VGKIAA DIKAEE + KEK+W+ +SQNEPSL+P +M SKL+V+D +AC++LL VLL+EH
Sbjct: 482 VGKIAAVDIKAEEILVKEKIWATISQNEPSLIPISMASKLAVEDSIACIDLLEVLLLEHL 541
Query: 540 HRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLV 599
R L FSV LLQLV+ F CHP WDIR++A + ++IITSVP LSE +L EFS +L+LV
Sbjct: 542 QRTLSNFSVTSLLQLVIFFICHPRWDIRRIACNVAKRIITSVPQLSEDILSEFSKYLNLV 601
Query: 600 GEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSI 659
EK+ + SDTD +D QVPF+PSVEV VK LL+++ A+ P + R+I CSHHP +
Sbjct: 602 EEKVSALRISDTDISLDPQVPFIPSVEVLVKALLIMSPAAMKVAPDSFVRIILCSHHPCV 661
Query: 660 VGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSL 719
VG+ KRDAVW+RL KCL+ GF+VI+IV+A+V N +VLLG +GL SAN LEQ+AAI+SL
Sbjct: 662 VGSAKRDAVWKRLCKCLQTHGFDVIDIVAANVINFVQVLLGPMGLRSANPLEQEAAISSL 721
Query: 720 STLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAA 779
S LMSI P DTY FEKHL +LP+ + H++LSENDIQ+F+TPEGMLS+EQG+Y+AE VA
Sbjct: 722 SNLMSIIPGDTYTEFEKHLLNLPERFSHNALSENDIQIFHTPEGMLSTEQGIYVAESVAF 781
Query: 780 KNTKQSKGRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKA-------D 832
KNTKQ+KGRFRMY E+DG+DH SNHS KR+ +RE +GAGKKD GK+TKKA D
Sbjct: 782 KNTKQAKGRFRMYGEEDGLDHTQSNHSMKRDQPSREAAGAGKKDSGKTTKKAGKFSTSID 841
Query: 833 KGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSL---- 888
KGKTAKEEARE LL EEASIR++V+ +Q+NLSLML LG MAIAN +FAHS+LPS+
Sbjct: 842 KGKTAKEEARESLLKEEASIRDRVREIQKNLSLMLRTLGNMAIANSIFAHSRLPSMVLEC 901
Query: 889 --------------VKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
VKFV+PLL+SPIV D A+E LV LSRCTA PLC+WALDI+TALRL+
Sbjct: 902 FLLIFVDLLPYICDVKFVEPLLRSPIVSDEAFETLVMLSRCTASPLCDWALDISTALRLV 961
Query: 935 VTEEVHVDSDLIPSVGEAAKN-KESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERI 993
VT+EVH+ DL+PSV E N K S LFERI++GL+ SCKSG LPVDSFTFVFPI+ERI
Sbjct: 962 VTDEVHLLLDLVPSVAEEQVNQKPSHGLFERIIDGLSTSCKSGALPVDSFTFVFPIMERI 1021
Query: 994 LLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMIS-------VLYHVLGVVPSYQAAIGSA 1046
LL K+T HDDVL+++Y HMD LPLPR+RM+S VLYH L VVP+Y+A+IG A
Sbjct: 1022 LLCSKKTKFHDDVLRLIYLHMDAHLPLPRVRMLSVIFPTLHVLYHALSVVPAYKASIGPA 1081
Query: 1047 LNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAV 1106
LNEL LG QP+EVASAL+GVY KDVHVRMACLNAVKCIPAVS+RSLP+N EV+TS+WIA+
Sbjct: 1082 LNELSLGFQPDEVASALYGVYAKDVHVRMACLNAVKCIPAVSSRSLPQNTEVATSIWIAL 1141
Query: 1107 HDPEK---------------SVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAA 1151
HDPEK SVAE AEDIWD YG+DFGTD+SG+FKALSH NYNVRLAAA
Sbjct: 1142 HDPEKKLLFLALGEFGWMSTSVAEVAEDIWDHYGFDFGTDFSGIFKALSHVNYNVRLAAA 1201
Query: 1152 EALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK 1211
EALA ALDE+PD IQ SLSTLFSLYIRD+G+G DNVDAGWLGRQG+ALALHSAADVLRTK
Sbjct: 1202 EALAAALDEHPDLIQESLSTLFSLYIRDMGIGNDNVDAGWLGRQGVALALHSAADVLRTK 1261
Query: 1212 DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEE 1271
DLPV+MTFLISRALAD NADVRGRM+N+GI+IIDK+G+DNVSLLFPIFENYLNK A DEE
Sbjct: 1262 DLPVVMTFLISRALADLNADVRGRMINSGILIIDKNGKDNVSLLFPIFENYLNKTAPDEE 1321
Query: 1272 KYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM 1331
+YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE+VQRAVS+CLSPLMQS
Sbjct: 1322 QYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSESVQRAVSACLSPLMQSK 1381
Query: 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRN 1391
QDEA TLV+RLLDQ+MKS+KYGERRGAAFGLAGVVKGFG+S LKKY I L+E LA+RN
Sbjct: 1382 QDEADTLVTRLLDQMMKSEKYGERRGAAFGLAGVVKGFGLSCLKKYKIVIILQECLAERN 1441
Query: 1392 SAKRREGALLAFECLCEKLGRLFEP---------YVIQMLPLLLVAFSDQVVAVREAAEC 1442
SAK REGALL FECLCE LG+LFEP YVIQMLPLLLV+FSDQV AVREAAEC
Sbjct: 1442 SAKSREGALLGFECLCETLGKLFEPYVDKFLTHKYVIQMLPLLLVSFSDQVAAVREAAEC 1501
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP
Sbjct: 1502 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1561
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQ 1562
KLTEVLTD+HPKVQSAGQTALQQVGSVIKNPEIA+LVPTLL GL+DPN+HTKYSLDILLQ
Sbjct: 1562 KLTEVLTDSHPKVQSAGQTALQQVGSVIKNPEIAALVPTLLKGLSDPNEHTKYSLDILLQ 1621
Query: 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
TTFVN++DAPSLALLVPIVHRGLR RSA+TKK+A+QIVGNMCSLVTEPKDMIPYIGLLLP
Sbjct: 1622 TTFVNSIDAPSLALLVPIVHRGLRVRSADTKKRASQIVGNMCSLVTEPKDMIPYIGLLLP 1681
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
EVKKVLVDPIPEVRSVAARAIGSLI GMGE+NFPDLV WL + LKSDNSNVERSGAAQGL
Sbjct: 1682 EVKKVLVDPIPEVRSVAARAIGSLIGGMGEDNFPDLVPWLFETLKSDNSNVERSGAAQGL 1741
Query: 1683 SEVL-------------------AALGTVYFEHILP------------------------ 1699
SEVL +G F ++P
Sbjct: 1742 SEVLVDPIPEVRSVAARAIGSLIGGMGEDNFPDLVPWLFETLKSDNSNVERSGAAQGLSE 1801
Query: 1700 ---------------DIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744
DIIRNCSHQ+ASVRDGYLTLFKYLPRSLGVQFQ YL QVLPAILD
Sbjct: 1802 VLAALGVEFFEHVFPDIIRNCSHQKASVRDGYLTLFKYLPRSLGVQFQKYLPQVLPAILD 1861
Query: 1745 GLADENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQSSVELL 1799
GLADENESVRDAALGAGHVLVEHYATT SLPLLLPAVEDGI ND+WRIRQSSVELL
Sbjct: 1862 GLADENESVRDAALGAGHVLVEHYATTYALSLSLPLLLPAVEDGIINDSWRIRQSSVELL 1921
Query: 1800 GDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859
GDLLFKVAGTSGKALLEGGSDDEG+STEAHGRAIIEVLGR+KRNE+LAALYMVR+DVSLS
Sbjct: 1922 GDLLFKVAGTSGKALLEGGSDDEGSSTEAHGRAIIEVLGREKRNEILAALYMVRADVSLS 1981
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919
VRQAALHVWKTIVANTPKTL+EIMPVLM+TLI+SLAS+SSERRQVAGR+LGELV KLGER
Sbjct: 1982 VRQAALHVWKTIVANTPKTLREIMPVLMDTLIASLASASSERRQVAGRSLGELVGKLGER 2041
Query: 1920 VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979
VLP IIPILS+GL DP +SRRQGVC GLSEVMASAGKSQL++FM +LIPTIRTALCDS
Sbjct: 2042 VLPLIIPILSQGLSDPDSSRRQGVCSGLSEVMASAGKSQLMTFMTDLIPTIRTALCDSEP 2101
Query: 1980 EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039
VRESAGLAFSTL+KSAGMQAIDEIVPTLLHALEDD+TSDTALDGLKQILSVRT+AVLPH
Sbjct: 2102 AVRESAGLAFSTLYKSAGMQAIDEIVPTLLHALEDDKTSDTALDGLKQILSVRTSAVLPH 2161
Query: 2040 ILPKLVHLPLSYVSLYLL 2057
ILPKLVH PLS + + L
Sbjct: 2162 ILPKLVHPPLSAFNAHAL 2179
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334183637|ref|NP_001185313.1| protein ILITYHIA [Arabidopsis thaliana] gi|332196169|gb|AEE34290.1| protein ILITYHIA [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2995 bits (7765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1492/2040 (73%), Positives = 1717/2040 (84%), Gaps = 63/2040 (3%)
Query: 25 RQRIFRHDVTSLIRNTEMSPEIASFLVDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTFM 84
R RIFRHD+ +++N++M+ +IA +VD+IF+T ++YDDR SRKAVDD+I KGLG VTFM
Sbjct: 142 RLRIFRHDIPEILQNSDMTSDIAPVIVDMIFQTLAIYDDRASRKAVDDLIVKGLGNVTFM 201
Query: 85 KTFAAALVQAMEKQSKFQSHVGCYRLLKWSCLLLSKSQFATVSKNALCRVAAAQASLLHI 144
KTFAA LVQ MEKQ KF CYRLL WSCLLL KSQFATVSKNA RVA+ QASLL I
Sbjct: 202 KTFAAMLVQVMEKQLKFCFDTVCYRLLIWSCLLLEKSQFATVSKNAFVRVASTQASLLRI 261
Query: 145 VMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKSPS 204
+M+ SFR RRACK+ FHLFSQS IY Y DE+K +RIPYK SPEL+ LLLEF SP+
Sbjct: 262 IMESSFRMRRACKRFMFHLFSQSQAIYSLYMDEVKGSRIPYKDSPELLGLLLEFSCSSPA 321
Query: 205 LFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKRNP 264
LFE+ + IF+DIYVK VLN++EK LS F PL +S E+FQ+++LPA++KMLKRNP
Sbjct: 322 LFEQSKAIFVDIYVKDVLNSREKQKPNLSNCFKPLLQRLSHEEFQTVILPAAVKMLKRNP 381
Query: 265 EIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDA 324
EI+LES+G LL +VN+DLSKYA E+L V+L Q RH DE R+ GAL+++ CLSEKSSNPD
Sbjct: 382 EIVLESVGFLLANVNIDLSKYALELLPVILPQARHTDEDRRLGALSMVMCLSEKSSNPDT 441
Query: 325 LEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYK 384
+EAMF ++KA+IGGSEGRL P+QRIGM+NA+QEL++A EGKY+ SLS TIC FL++CYK
Sbjct: 442 IEAMFASVKAIIGGSEGRLQSPHQRIGMLNAVQELASAPEGKYIGSLSRTICSFLIACYK 501
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKEALRRGHLRCLRVICTNTD 444
DEGNE+VKL+ILSAVASWA RS+ IQ +L+SF A+GLKEKEALRRGHLRC+R+IC N D
Sbjct: 502 DEGNEDVKLSILSAVASWASRSSVAIQPNLVSFIAAGLKEKEALRRGHLRCVRIICRNPD 561
Query: 445 AVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVS 504
+ Q+S LL PLIQLVKTGFTKAVQRLDGIYA LIV KIAA DIKAE+T+ KEKLW+L+S
Sbjct: 562 TISQISDLLSPLIQLVKTGFTKAVQRLDGIYALLIVSKIAACDIKAEDTMVKEKLWTLIS 621
Query: 505 QNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSW 564
QNEPSLV + SKLS DDC+ CV+LL VLLVEHS RVLE FS+K L QL+L CHPSW
Sbjct: 622 QNEPSLVQITLASKLSSDDCVVCVDLLEVLLVEHSSRVLEAFSLKSLSQLLLFLLCHPSW 681
Query: 565 DIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPS 624
++RK A+++ KI + L+ LL EFS+FLS+ G++I+ S+TSD D+ D Q PF+PS
Sbjct: 682 NVRKTAYNSVTKIFLATSQLATTLLDEFSDFLSITGDQIVSSRTSDADNPADHQAPFVPS 741
Query: 625 VEVQVKTLLVIASVALARGPSAS-ARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNV 683
VEV VK L+VI+S A+A PS+ R IFCSHHPSIVGTGKRDAVW+RL KCL+ GF+V
Sbjct: 742 VEVLVKALIVISSAAVAGPPSSWIVRAIFCSHHPSIVGTGKRDAVWKRLQKCLKTCGFDV 801
Query: 684 IEIVSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEKHLKDLPD 743
+S + ++CK LLG +GL SA EQQAA+ SLST+MS+ P+DT+ F+ HL+DLPD
Sbjct: 802 ATFLSTNGESVCKSLLGPMGLTSAKTPEQQAAVYSLSTMMSLAPEDTFTVFKMHLQDLPD 861
Query: 744 CYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKNTKQSKGRFRMYEEQDGVDHVGS 803
HD LSE DI++F+TPEGML SEQGVY+A+ + AK TKQ S
Sbjct: 862 RLSHDMLSETDIKIFHTPEGMLLSEQGVYVAQTIGAKYTKQEPS---------------S 906
Query: 804 NHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNL 863
NHS K+ A+RE + +G++D K TKKADKGKTAKEEAREL+L EEAS RE V +Q++L
Sbjct: 907 NHSLKKGLASRETANSGRRDTAKLTKKADKGKTAKEEARELMLKEEASTRENVHRIQKSL 966
Query: 864 SLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNW 923
SL+L ALGEM +ANPVF HSQLP L F+DPLL+SPIV A+E LVKL+RCT PLCNW
Sbjct: 967 SLVLHALGEMGLANPVFCHSQLPFLATFLDPLLRSPIVSAAAFENLVKLARCTVQPLCNW 1026
Query: 924 ALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF 983
AL+I+TALRLI +EV D PSV +A K E L FERIVNGL++SCKSGPLPVD+F
Sbjct: 1027 ALEISTALRLIAIDEVDTSFDFRPSVDKAGKTYEGL--FERIVNGLSISCKSGPLPVDTF 1084
Query: 984 TFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAI 1043
TF+FP VLYHVLGVVP+YQA++
Sbjct: 1085 TFIFP---------------------------------------VLYHVLGVVPAYQASV 1105
Query: 1044 GSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLW 1103
G ALNELCLGLQ ++VA+AL+GVY+KDVHVR+ACLNAVKCIPAVS SLP+N++++T++W
Sbjct: 1106 GPALNELCLGLQADDVANALYGVYSKDVHVRLACLNAVKCIPAVSKCSLPQNVKIATNIW 1165
Query: 1104 IAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPD 1163
IA+HDPEKSVAE+A+D+W RYG+D GTDYSG+FKALSH N NVRLAAAEALA AL E P
Sbjct: 1166 IALHDPEKSVAESADDLWARYGHDLGTDYSGIFKALSHINLNVRLAAAEALADALHESPS 1225
Query: 1164 SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISR 1223
SIQ SLSTLFSLYIRD G D DAGW+GRQGIALAL SAADVL TKDLP +MTFLISR
Sbjct: 1226 SIQLSLSTLFSLYIRDATSGEDVFDAGWIGRQGIALALQSAADVLTTKDLPAVMTFLISR 1285
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
ALAD N DVRG+M+NAGIMIIDKHG++NVSLLFPIFENYLNK+ASDEE+YDLVREGVVIF
Sbjct: 1286 ALADPNTDVRGKMINAGIMIIDKHGKENVSLLFPIFENYLNKEASDEEEYDLVREGVVIF 1345
Query: 1284 TGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLL 1343
TGALAKHLA+DDPKVH VV+KLL+VLNTPSE+VQRAVS+CLSPL+ S Q+EAP L RLL
Sbjct: 1346 TGALAKHLARDDPKVHNVVEKLLEVLNTPSESVQRAVSTCLSPLVLSKQEEAPALFLRLL 1405
Query: 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
D+LMKSDKYGERRGAAFGLAGVV GFGISSLKKYG+ TL+E L DRNSAKRREGALLAF
Sbjct: 1406 DKLMKSDKYGERRGAAFGLAGVVMGFGISSLKKYGLIVTLQEALIDRNSAKRREGALLAF 1465
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSL 1463
ECLCEKLG+LFEPYVI+MLPLLLV+FSDQV AVREAAECAARAMMSQLSA GVKLVLPSL
Sbjct: 1466 ECLCEKLGKLFEPYVIKMLPLLLVSFSDQVGAVREAAECAARAMMSQLSAYGVKLVLPSL 1525
Query: 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV------LTDTHPKVQS 1517
LKGLEDKAWRTKQSSVQLLGAMA+CAPQQLSQCLP++VPKLTEV LTDTHPKVQS
Sbjct: 1526 LKGLEDKAWRTKQSSVQLLGAMAFCAPQQLSQCLPRVVPKLTEVFKTIQVLTDTHPKVQS 1585
Query: 1518 AGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577
AGQ ALQQVGSVIKNPEI+SLVPTLL+ LTDPN++T+++LD LLQTTFVN+VDAPSLALL
Sbjct: 1586 AGQLALQQVGSVIKNPEISSLVPTLLLALTDPNEYTRHALDTLLQTTFVNSVDAPSLALL 1645
Query: 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637
VPIVHRGLRERS+ETKKKA+QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS
Sbjct: 1646 VPIVHRGLRERSSETKKKASQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1705
Query: 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697
VAARA+GSLIRGMGE+NFPDLV WL + LKSD SNVER GAAQGLSEV+AALGT YFE+I
Sbjct: 1706 VAARAVGSLIRGMGEDNFPDLVPWLFETLKSDTSNVERYGAAQGLSEVIAALGTDYFENI 1765
Query: 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAA 1757
LPD+IR+CSHQ+ASVRDGYLTLFK+LPRSLG QFQ YLQ VLPAILDGLADENESVRDAA
Sbjct: 1766 LPDLIRHCSHQKASVRDGYLTLFKFLPRSLGAQFQKYLQLVLPAILDGLADENESVRDAA 1825
Query: 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817
LGAGHVLVEH+ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG
Sbjct: 1826 LGAGHVLVEHHATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1885
Query: 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1877
GSDDEGASTEA GRAII++LG DKRNEVLAALYMVR+DVSLSVRQAALHVWKTIVANTPK
Sbjct: 1886 GSDDEGASTEAQGRAIIDILGMDKRNEVLAALYMVRTDVSLSVRQAALHVWKTIVANTPK 1945
Query: 1878 TLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937
TLKEIMP+LM+TLISSLAS SSERRQVAGR+LGELVRKLGERVLP IIPILS+GLKDP
Sbjct: 1946 TLKEIMPILMSTLISSLASPSSERRQVAGRSLGELVRKLGERVLPLIIPILSKGLKDPDV 2005
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+RQGVCIGL+EVMASAG+SQLLSFMD+LIPTIRTALCDS LEVRESAGLAFSTL+KSAG
Sbjct: 2006 DKRQGVCIGLNEVMASAGRSQLLSFMDQLIPTIRTALCDSALEVRESAGLAFSTLYKSAG 2065
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSYVSLYLL 2057
+QA+DEI+PTLL ALEDD+ S TALDGLKQI+SVRT AVLPHILPKLVHLPLS ++ + L
Sbjct: 2066 LQAMDEIIPTLLEALEDDEMSTTALDGLKQIISVRTAAVLPHILPKLVHLPLSALNAHAL 2125
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2058 | ||||||
| RGD|1593434 | 2672 | Gcn1l1 "GCN1 general control o | 0.480 | 0.370 | 0.466 | 1.4e-287 | |
| UNIPROTKB|Q92616 | 2671 | GCN1L1 "Translational activato | 0.464 | 0.357 | 0.473 | 5.4e-286 | |
| UNIPROTKB|F1NAK4 | 2672 | GCN1L1 "Uncharacterized protei | 0.456 | 0.351 | 0.479 | 1.1e-285 | |
| UNIPROTKB|F1MZT7 | 2676 | GCN1L1 "Uncharacterized protei | 0.464 | 0.357 | 0.475 | 2.9e-282 | |
| FB|FBgn0039959 | 2630 | CG17514 [Drosophila melanogast | 0.469 | 0.367 | 0.464 | 9.3e-266 | |
| DICTYBASE|DDB_G0279487 | 2667 | DDB_G0279487 "GCN1-like protei | 0.600 | 0.463 | 0.384 | 8.2e-234 | |
| ASPGD|ASPL0000003073 | 2672 | AN10734 [Emericella nidulans ( | 0.473 | 0.364 | 0.398 | 3.1e-202 | |
| UNIPROTKB|G4MR95 | 2678 | MGG_04710 "Translational activ | 0.569 | 0.437 | 0.357 | 9.5e-201 | |
| POMBASE|SPAC18G6.05c | 2670 | SPAC18G6.05c "translation elon | 0.414 | 0.319 | 0.418 | 2.6e-196 | |
| UNIPROTKB|F1RJK5 | 1280 | GCN1L1 "Uncharacterized protei | 0.334 | 0.538 | 0.531 | 1.5e-195 |
| RGD|1593434 Gcn1l1 "GCN1 general control of amino-acid synthesis 1-like 1 (yeast)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 2297 (813.6 bits), Expect = 1.4e-287, Sum P(3) = 1.4e-287
Identities = 472/1012 (46%), Positives = 657/1012 (64%)
Query: 1051 CLGLQPNEVASALHGVYTKDVHVRMACLNAVK----CIPAVSTRSLPENIEVSTSLWIAV 1106
C + EV L + + VR L + +PA T + + LW+
Sbjct: 1077 CAFAEQEEVDVLLAALQSPCASVRETALRGLMELHLVLPAPDTDE-KNGLNLLRRLWVVK 1135
Query: 1107 HDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRXXXXXXXXXXXDEYPDS- 1164
D E+ + + AE +W G D +D S L + + VR Y
Sbjct: 1136 FDKEEEIRKLAERLWTTMGLDLQSDLCSLLIDDVIYHEAAVRQAGAEALSQAVARYQRQA 1195
Query: 1165 --IQGSLSTLFS--LY----IRDIGLG---GDNVDAGWLGRQGIALALHSAADVLRTKDL 1213
+ G L ++ LY + D LG ++ W R G+ALAL+ + L + +
Sbjct: 1196 AEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQWEARCGLALALNKLSQYLDSSQV 1254
Query: 1214 PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKY 1273
+ F + AL D N DVR ML+A + ++ HG++NV+ L P+FE +L K A ++ Y
Sbjct: 1255 KPLFQFFVPDALNDRNPDVRKCMLDAALATLNAHGKENVNSLLPVFEEFL-KDAPNDASY 1313
Query: 1274 DLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD 1333
D VR+ VV+ G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+SCL PL+ ++++
Sbjct: 1314 DAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALSTPSQQVQESVASCLPPLVPAVKE 1373
Query: 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSA 1393
+A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG GI SLK+ + A L + + D+ +
Sbjct: 1374 DAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNF 1433
Query: 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSA 1453
+RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D +MS LSA
Sbjct: 1434 RRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSA 1493
Query: 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513
GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H
Sbjct: 1494 HGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHV 1553
Query: 1514 KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573
KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL T FV+ +DAPS
Sbjct: 1554 KVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPS 1613
Query: 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 1633
LAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P +K L+DP+P
Sbjct: 1614 LALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVP 1672
Query: 1634 EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693
EVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL+EV+A LG
Sbjct: 1673 EVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEK 1732
Query: 1694 FEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P IL LADENE
Sbjct: 1733 LEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENE 1792
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
VRD AL AG ++ YA T++ LLLP +E G+F+D WRIR SSV+LLGDLLF ++G +G
Sbjct: 1793 FVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTG 1852
Query: 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
K E S+D+ T +AII LG D+RN VLA LYM RSD L VRQA+LHVWK +
Sbjct: 1853 KMTTETASEDDNFGTAQSNKAIITALGVDRRNRVLAGLYMGRSDTQLVVRQASLHVWKIV 1912
Query: 1872 VANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRG 1931
V+NTP+TL+EI+P L L+ ++R +A R LG+LVRKLGE++LP IIPIL G
Sbjct: 1913 VSNTPRTLREILPTLFGLLLGFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEG 1972
Query: 1932 LKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991
L+ + RQGVCIGLSE+M S + +L F + L+PT R ALCD + EVRE+A F
Sbjct: 1973 LRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQ 2032
Query: 1992 LFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPK 2043
L + G QA+++I+P LL L+D++ S+ ALDGLKQ+++V++ VLP+++PK
Sbjct: 2033 LHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQVMAVKSRVVLPYLVPK 2084
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| UNIPROTKB|Q92616 GCN1L1 "Translational activator GCN1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 2285 (809.4 bits), Expect = 5.4e-286, Sum P(3) = 5.4e-286
Identities = 462/975 (47%), Positives = 645/975 (66%)
Query: 1084 IPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHS 1142
+PA T + + LW+ D E+ + + AE +W G D D S L + +
Sbjct: 1113 LPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSMMGLDLQPDLCSLLIDDVIYH 1171
Query: 1143 NYNVRXXXXXXXXXXXDEYPDS---IQGSLSTLFS--LY----IRDIGLG---GDNVDAG 1190
VR Y + G L ++ LY + D LG ++
Sbjct: 1172 EAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQ 1230
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
W R G+ALAL+ + L + + + F + AL D + DVR ML+A + ++ HG++
Sbjct: 1231 WEARCGLALALNKLSQYLDSSQVKPLFQFFVPDALNDRHPDVRKCMLDAALATLNTHGKE 1290
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L+
Sbjct: 1291 NVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALS 1349
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
TPS+ VQ +V+SCL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG G
Sbjct: 1350 TPSQQVQESVASCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLG 1409
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430
I SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F
Sbjct: 1410 ILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFG 1469
Query: 1431 DQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
D +MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP
Sbjct: 1470 DGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAP 1529
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+
Sbjct: 1530 KQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILAIAPVLLDALTDPS 1589
Query: 1551 DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+
Sbjct: 1590 RKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQ 1648
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670
KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L +
Sbjct: 1649 KDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQ 1708
Query: 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLG 1728
S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+ +F YLP + G
Sbjct: 1709 SSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFG 1768
Query: 1729 VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDN 1788
+F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F+D
Sbjct: 1769 DKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDL 1828
Query: 1789 WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA 1848
WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG ++RN VLA
Sbjct: 1829 WRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVERRNRVLAG 1888
Query: 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRA 1908
LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ ++R +A R
Sbjct: 1889 LYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIAART 1948
Query: 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIP 1968
LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M S + +L F + L+P
Sbjct: 1949 LGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVP 2008
Query: 1969 TIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQI 2028
T R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S+ ALDGLKQ+
Sbjct: 2009 TARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQV 2068
Query: 2029 LSVRTTAVLPHILPK 2043
+++++ VLP+++PK
Sbjct: 2069 MAIKSRVVLPYLVPK 2083
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| UNIPROTKB|F1NAK4 GCN1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 2278 (807.0 bits), Expect = 1.1e-285, Sum P(3) = 1.1e-285
Identities = 459/958 (47%), Positives = 640/958 (66%)
Query: 1102 LWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNYNVRXXXXXXXXXXXDE 1160
LW+ D E + + AE +W+ G + D S L K + + VR +
Sbjct: 1130 LWVVKFDVEDEIQKLAERLWESMGLELQPDLCSLLIKDVIYHEEAVRQAGAEALSKAVAQ 1189
Query: 1161 YPDSIQGSLSTLFSLYIRDI--------GLG---GDNVDAGWLGRQGIALALHSAADVLR 1209
Y ++ L +Y + LG ++ W R GIALAL+ ++ L
Sbjct: 1190 YQHQAAEVMNKLTEIYQEKLYRPPPVLDALGRVISESPPDQWEARCGIALALNKLSEHLD 1249
Query: 1210 TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269
+ + + F + AL D N +VR ML+A + ++ HG+DNV+ L P+FE +L K A +
Sbjct: 1250 SSQVKPLFQFFVPDALNDRNPEVRKCMLDAALSTLNTHGKDNVNSLLPVFEEFL-KNAPN 1308
Query: 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ YD VR+ VVI G+LAKHL K DPKV +V KL+ L+TPS+ VQ +V+SCL PL+
Sbjct: 1309 DASYDAVRQSVVILMGSLAKHLDKSDPKVKPIVGKLIAALSTPSQQVQESVASCLPPLVP 1368
Query: 1330 SMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
+++++A ++ +L+ L++SDKY ER+GAA+GLAG+VKG GI SLK+ + TL + + D
Sbjct: 1369 AIKEDAGGMIQKLMQLLLESDKYAERKGAAYGLAGLVKGLGILSLKQQEMMTTLTDAIQD 1428
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMS 1449
+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F D +MS
Sbjct: 1429 KKNFRRREGALFAFEMLCSMLGKLFEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMS 1488
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQS--SVQLLGAMAYCAPQQLSQCLPKIVPKLTEV 1507
LS GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP+QLS CLP IVPKLTEV
Sbjct: 1489 NLSTHGVKLVLPSLLAALEEESWRTKAGTGSVELLGAMAYCAPKQLSSCLPNIVPKLTEV 1548
Query: 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567
LTD+H KVQ+AGQ AL+Q+GSVI+NPEI ++ P LL LTDP+ T+ L LL T FV+
Sbjct: 1549 LTDSHVKVQNAGQQALRQIGSVIRNPEILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVH 1608
Query: 1568 TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627
+DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL T+ KD+ PY+ + P +K
Sbjct: 1609 FIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKAS 1667
Query: 1628 LVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687
L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L + S+V+RSGAAQGL+EV+A
Sbjct: 1668 LLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMA 1727
Query: 1688 ALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745
LG E ++P+I+ S + VRDGY+ +F YLP + G +F Y+ ++P IL
Sbjct: 1728 GLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFIPYVGPIIPCILKA 1787
Query: 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK 1805
LADENE VRD AL AG ++ YA T++ LLLP +EDG+F+D WRIR SSV+LLGDLLF
Sbjct: 1788 LADENEFVRDTALRAGQRIISMYAETAIALLLPQLEDGLFDDLWRIRFSSVQLLGDLLFH 1847
Query: 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAAL 1865
++G +GK E S+D+ T +AII LG ++RN VLA LYM RSD L VRQA+L
Sbjct: 1848 ISGVTGKMTTETASEDDNFGTAQSNKAIINALGVERRNRVLAGLYMGRSDTQLVVRQASL 1907
Query: 1866 HVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSII 1925
HVWK +V+NTP+TL+EI+P L L+ ++R VA R LG+LVRKLGE++LP II
Sbjct: 1908 HVWKIVVSNTPRTLREILPTLFGLLLKFLASTCADKRTVAARTLGDLVRKLGEKILPEII 1967
Query: 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESA 1985
PIL GL+ RQGVCIGLSE+M S + +L F + L+PT+R ALCD + EVRE+A
Sbjct: 1968 PILEDGLRSDKNDERQGVCIGLSEIMKSTSRDAVLVFSESLVPTVRKALCDPLEEVREAA 2027
Query: 1986 GLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPK 2043
F L + G QA+++I+P LL L++++TSD A+DGLKQ+++V++ VLP+++PK
Sbjct: 2028 AKTFEQLHSTIGHQALEDILPFLLKQLDNEETSDFAVDGLKQVMAVKSRVVLPYLVPK 2085
|
|
| UNIPROTKB|F1MZT7 GCN1L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 2288 (810.5 bits), Expect = 2.9e-282, Sum P(2) = 2.9e-282
Identities = 465/978 (47%), Positives = 646/978 (66%)
Query: 1084 IPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHS 1142
+PA T + + LW+ D E+ + + AE +W G D D S L + +
Sbjct: 1115 LPAPDTDE-KNGLNLLRRLWVVKFDKEEEIRKLAERLWSTMGLDLQPDLCSLLIDDVIYH 1173
Query: 1143 NYNVRXXXXXXXXXXXDEYPDS---IQGSLSTLFS--LY----IRDIGLG---GDNVDAG 1190
VR Y + G L ++ LY + D LG ++
Sbjct: 1174 EAAVRQAGAEALSQAVARYQRQAAEVMGRLMEIYQEKLYRPPPVLD-ALGRVISESPPDQ 1232
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
W R G+ALAL+ + L + + + F + AL D N DVR ML+A + ++ HG++
Sbjct: 1233 WEARCGLALALNKLSQCLDSSQVKPLFQFFVPDALNDRNPDVRKCMLDAALATLNTHGKE 1292
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
NV+ L P+FE +L K A ++ YD VR+ VV+ G+LAKHL K DPKV +V KL+ L
Sbjct: 1293 NVNSLLPVFEEFL-KNAPNDASYDAVRQSVVVLMGSLAKHLDKSDPKVKPIVAKLIAALA 1351
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
TPS+ VQ +V++CL PL+ +++++A ++ RL+ QL++SDKY ER+GAA+GLAG+VKG G
Sbjct: 1352 TPSQQVQESVANCLPPLVPAIKEDAGGMIQRLMQQLLESDKYAERKGAAYGLAGLVKGLG 1411
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430
I SLK+ + A L + + D+ + +RREGAL AFE LC LG+LFEPYV+ +LP LL+ F
Sbjct: 1412 ILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKLFEPYVVHVLPHLLLCFG 1471
Query: 1431 DQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490
D +MS LSA GVKLVLPSLL LE+++WRTK SV+LLGAMAYCAP
Sbjct: 1472 DGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWRTKAGSVELLGAMAYCAP 1531
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI---ASLVPTLLMGLT 1547
+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NPEI A++ P LL LT
Sbjct: 1532 KQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNPEILGHAAIAPVLLDALT 1591
Query: 1548 DPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607
DP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+K AAQI+GNM SL
Sbjct: 1592 DPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTRKMAAQIIGNMYSL- 1650
Query: 1608 TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALK 1667
T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE F DL+ WL++ L
Sbjct: 1651 TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGESCFEDLLPWLMETLT 1710
Query: 1668 SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS--VRDGYLTLFKYLPR 1725
+ S+V+RSGAAQGL+EV+A LG E ++P+I+ S + VRDGY+ +F YLP
Sbjct: 1711 YEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPI 1770
Query: 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1785
+ G +F Y+ ++P IL LADENE VRD AL AG ++ YA T++ LLLP +E G+F
Sbjct: 1771 TFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLF 1830
Query: 1786 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV 1845
+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +AII LG D+RN V
Sbjct: 1831 DDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVDRRNRV 1890
Query: 1846 LAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVA 1905
LA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+ ++R +A
Sbjct: 1891 LAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIA 1950
Query: 1906 GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDE 1965
R LG+LVRKLGE++LP IIPIL GL+ P + RQGVCIGLSE+M S + +L F +
Sbjct: 1951 ARTLGDLVRKLGEKILPEIIPILEEGLRSPKSDERQGVCIGLSEIMKSTSRDAVLYFSES 2010
Query: 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGL 2025
L+PT R ALCD + EVRE+A F L + G QA+++I+P LL L+D++ S+ ALDGL
Sbjct: 2011 LVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGL 2070
Query: 2026 KQILSVRTTAVLPHILPK 2043
KQ++++++ VLP+++PK
Sbjct: 2071 KQVMAIKSRVVLPYLVPK 2088
|
|
| FB|FBgn0039959 CG17514 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 2251 (797.5 bits), Expect = 9.3e-266, Sum P(4) = 9.3e-266
Identities = 460/991 (46%), Positives = 648/991 (65%)
Query: 1073 VRMACLNAVKCIP--AVSTRSLPENIE--VSTSLWIAVHDPEKSVAEAAEDIWDRYGYDF 1128
VR L ++K + V+ + ++E + W+A HDPE+ E A +W+ +
Sbjct: 1058 VRKVALQSLKIMVNGIVNHIKVDNSLEKVIINRFWVAKHDPEEENRELALFLWNTAKFPL 1117
Query: 1129 GTDYSGLFKALSHSNYNVRXXXXXXXX--XXXDEYPDSIQGSLSTLFSLYIRDIGLGG-- 1184
Y + ++HS ++ DE + LFS+Y + L
Sbjct: 1118 -PGYVDIINDITHSETCIQKSASESLIPLLAGDEVLKKCV--IKKLFSIYKAKLSLLPPV 1174
Query: 1185 -DNVDAG-------WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRM 1236
D D W R+GIA+A + A +L +D+ IM F++S+ L D V M
Sbjct: 1175 LDQFDREIEPAIDQWKPRRGIAIAFSTIAFLLSIEDINDIMNFMVSQGLGDREDVVHKEM 1234
Query: 1237 LNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDP 1296
L + I+D HG + L P+FE++L+K A + YD +R+ VVI G+LA+HL KDD
Sbjct: 1235 LATALKIVDLHGNKAIENLLPVFEDFLDK-APKSQSYDNIRQAVVILMGSLARHLEKDDK 1293
Query: 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERR 1356
++ +V +L+ L+TPS+ VQ AVS+CL LM S++DEAP+++ +LL L KS+KYGERR
Sbjct: 1294 RIDPIVKRLITSLSTPSQQVQEAVSNCLPHLMPSVKDEAPSMIKKLLHSLAKSEKYGERR 1353
Query: 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416
GAA+G+AG+VKG GI SLK+ I + L + D+ + + REGAL AFE LC LGRLFEP
Sbjct: 1354 GAAYGIAGIVKGLGILSLKQLDIMSKLTAFIQDKKNYRSREGALFAFEVLCSTLGRLFEP 1413
Query: 1417 YVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476
Y++ +LP LL F D +M +LSA GVKLVLPSLL+ L++ +WRTK
Sbjct: 1414 YIVHVLPHLLQCFGDPSQYVRQAADDTAKVVMRKLSAHGVKLVLPSLLEALDEDSWRTKT 1473
Query: 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536
+SV+LLGAMA+CAP+QLS CLP IVPKL +VL D+H KVQ +G AL+ +GSVIKNPEI
Sbjct: 1474 ASVELLGAMAFCAPKQLSSCLPSIVPKLIQVLGDSHTKVQESGGEALKVIGSVIKNPEIQ 1533
Query: 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596
++VP LL L DP+++T L LL+T F++ +DAPSLAL++P+V R +RS ET+K A
Sbjct: 1534 AIVPVLLDALEDPSNNTSTCLQSLLKTKFIHFIDAPSLALIMPVVQRAFMDRSTETRKMA 1593
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656
AQI+GNM SL T+ KD+ PY+ ++P +K L+DP+PEVR+V+ARA+G++++GMGE +F
Sbjct: 1594 AQIIGNMYSL-TDQKDLAPYLPSIIPGLKSSLLDPVPEVRAVSARALGAMVKGMGESSFE 1652
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRD 1714
+L+ WL++ L S++S+V+RSGAAQGLSEV+ LG ++P+II A V+D
Sbjct: 1653 NLLPWLMETLTSESSSVDRSGAAQGLSEVVGGLGVEKMHKLMPEIISTAERVDIAAHVKD 1712
Query: 1715 GYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP 1774
GY+ +F Y+P + +F Y+ Q++ IL LADE+E VRD AL AG +V YA T++
Sbjct: 1713 GYIMMFIYMPGAFQEEFTPYIGQIINPILKALADESEFVRDTALKAGQRIVNLYAETAVA 1772
Query: 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834
LLLP +E G+F+DNWRIR SSV+LLGDLL++++G SGK E S+D+ TE AII
Sbjct: 1773 LLLPELEKGLFDDNWRIRYSSVQLLGDLLYRISGVSGKMTTETASEDDNFGTEHSHTAII 1832
Query: 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXX 1894
LG ++RN VL+ LYM RSDVSL VRQAALHVWK +V NTP+TL+EI+P L L+
Sbjct: 1833 HFLGDERRNRVLSGLYMGRSDVSLMVRQAALHVWKVVVTNTPRTLREILPTLFGLLLGCL 1892
Query: 1895 XXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954
++RQVA R LG+LVRKLGERVLP IIPIL GL +RQGVCIGLSE+M S
Sbjct: 1893 ASTSYDKRQVAARTLGDLVRKLGERVLPEIIPILENGLNSDHPDQRQGVCIGLSEIMGST 1952
Query: 1955 GKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 2014
K +L+F+D L+PT+R ALCD + EVRE+A F +L + G +A+DEI+P +L L D
Sbjct: 1953 SKEMVLTFIDSLVPTVRKALCDPLPEVREAAAKTFESLHSTVGSRALDEILPFMLQGLSD 2012
Query: 2015 DQ--TSDTALDGLKQILSVRTTAVLPHILPK 2043
++ LDGL+Q++S+++ VLP+++P+
Sbjct: 2013 ADPFVAENTLDGLRQVMSIKSKVVLPYLVPQ 2043
|
|
| DICTYBASE|DDB_G0279487 DDB_G0279487 "GCN1-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 2144 (759.8 bits), Expect = 8.2e-234, Sum P(3) = 8.2e-234
Identities = 489/1271 (38%), Positives = 733/1271 (57%)
Query: 793 EEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTXXXXXXXXXXXXXXS- 851
E+Q+ + ++ K ++A + +K I + KK G+ +
Sbjct: 833 EKQEQLVESRNDRKVKPKTAEEQRDEESRKRI-EEKKKIQSGELEKQEKERQKQLAAQAV 891
Query: 852 IREKVQGVQRNLSLMLSALGEMA--IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEAL 909
IR+ VQ V L L + MA +NP F + ++ + L++ I +
Sbjct: 892 IRKDVQDVIDRLHLAMDTCQTMAKSSSNPQFVGEFMSPIIVALLQLMKHEITNHQFTQVF 951
Query: 910 VKLSRCTAMPLCNWALDIATALRLI-VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNG 968
KL C +P + LD + A I + ++ P++ E + L ++I+
Sbjct: 952 EKLICC--VP-SRFKLDRSFARHYIYIINNIYYR----PTLSEI----QILGFIQKILTH 1000
Query: 969 LTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDXXXXXXXXXMISV 1028
+ S L +F + +PII+ L + + + ++++ KH MIS
Sbjct: 1001 IRESIAKEALSGFAFNYFWPIIKNGLETTISFTIQEISMEIIQKHTAQGQAYPRGSMISS 1060
Query: 1029 LYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVS 1088
L V+ +A + + +L G++ +++ + G+ +K V VR CL A++ IP++
Sbjct: 1061 LIIVVSTNSRLEAQARNTIFQLIEGVETSDIGELMEGIISKHVQVRSICLQAIEKIPSIY 1120
Query: 1089 TRSLPENIEVSTSLWIAVHDPEKSVAEA-AEDIWDRYGYDFGTDYSGLF-KALSHSNYNV 1146
+ S + SLW A D + A AE IW + T F K LS S +NV
Sbjct: 1121 SPSFVWEDKYIGSLWFARFDNHDANTSALAEKIW--LATNQPTQLPEDFMKLLSDSTFNV 1178
Query: 1147 RXXXXXXXXXXXDE----YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202
E + I + LF +Y ++ R +A AL
Sbjct: 1179 NSETRKINALAIKEAATCHTHMIPEIVDNLFEIYEQNYPDEIRETPITSKFRISVATALS 1238
Query: 1203 SAAD-VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFEN 1261
+ ++ + L + T +I R L D +V ++ G+ II++ G L FE
Sbjct: 1239 GLGNAIVEPEVLKSLFTKIIERGLFDPKEEVVQEFVSTGMSIINQQGVQFSGELLATFEA 1298
Query: 1262 YLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
+L + + + D +R VV++ GALAKH+ +PKV V+DKL+D L+ PSE+VQ +S
Sbjct: 1299 FLARPDNGTGEEDSIRANVVVYMGALAKHMDASNPKVSIVIDKLVDALSIPSESVQVGIS 1358
Query: 1322 SCLSPLMQSMQDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380
C++ L+ S + + L+ LL++L S Y +RRGAAFGLAG VKG GI SLK Y I
Sbjct: 1359 KCIAQLIPSFKKQGDRLIPMLLEKLKNSSGNYADRRGAAFGLAGSVKGLGIGSLKNYSIL 1418
Query: 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXX 1440
TL+ + D+ R+GAL AFECLC +GR+FEPY+I +LP LLV F D
Sbjct: 1419 DTLQSYIEDKKHPTSRQGALFAFECLCNTIGRVFEPYIIHILPKLLVCFGDNVSEVRDAT 1478
Query: 1441 XXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500
+MSQLS GVK+VLP+LLK L+D++WRTK+ S++LLGAMA+CAP+QLS CLP I
Sbjct: 1479 ADTAKAIMSQLSGHGVKIVLPALLKALDDRSWRTKEGSIELLGAMAFCAPKQLSSCLPTI 1538
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDIL 1560
VPKLT VL DTH KVQ A + AL +GSVI+NPEI VP LL DP H+K L+ L
Sbjct: 1539 VPKLTYVLNDTHTKVQEAAKEALSHIGSVIRNPEIQIHVPLLLQTYDDPEIHSKELLENL 1598
Query: 1561 LQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620
L T +V+T+D SL+LL+PI+ R L+ERS+E KK + QIVGN+CSL TEPKD++PY+ +L
Sbjct: 1599 LSTNYVHTIDPASLSLLLPILERTLKERSSELKKMSCQIVGNLCSL-TEPKDLVPYLNIL 1657
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
+P +K VL+DPIPEVR++ ARA+G L+RGMGEENF L+ WLL+ +KSD VERSGAAQ
Sbjct: 1658 MPVMKTVLLDPIPEVRAICARALGLLVRGMGEENFSTLIPWLLETVKSDQGAVERSGAAQ 1717
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
GLSEVLA+L F ++ +++ + R VR+G L++F + P SLG F YL +VLP
Sbjct: 1718 GLSEVLASLDISRFNSLINELLAMTNSPRPHVREGILSIFIFTPISLGDLFLPYLPKVLP 1777
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
+L GLAD+++ VR+ + G +V +A T + +++PA+E +F++NWRIR S V+L G
Sbjct: 1778 QVLKGLADDSDPVREVCMRCGQSIVLQFAVTGIEVIVPALEKVLFHENWRIRLSCVQLFG 1837
Query: 1801 DLLFKVAGTSGKALLEGGS-----DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
DLLFK+AGT+ + + S DD+ + G I ++LG+++ +L++LYM+R D
Sbjct: 1838 DLLFKLAGTTAQEVQSNNSSYNAKDDDDDEPGSSGNDIQKILGKERLGRILSSLYMMRFD 1897
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRK 1915
+ SVRQ L +WK IV+NTPKTL+EI+P L+ +I E+RQ++ + LG++V K
Sbjct: 1898 NNSSVRQKVLLIWKYIVSNTPKTLREILPTLIEMIISSIGSNNVEKRQISAKTLGDIVSK 1957
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975
L +R+LP I+PIL RGL+ RQGVCIGLSEV++SA K+QLL ++ ++ I ALC
Sbjct: 1958 LSDRILPEILPILERGLRSELEETRQGVCIGLSEVISSA-KTQLLPYLSSVVTCITKALC 2016
Query: 1976 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTA---LDGLKQILSVR 2032
D +++VRE+A AF L+ + G +A +EI+P L+ L++ D A LDGL+Q++ VR
Sbjct: 2017 DPLIDVREAAAKAFDHLYHTFGSKASNEILPQLIQLLDNSNNKDLAGYALDGLRQVILVR 2076
Query: 2033 TTAVLPHILPK 2043
++ VLP ++PK
Sbjct: 2077 SSIVLPVLIPK 2087
|
|
| ASPGD|ASPL0000003073 AN10734 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 1797 (637.6 bits), Expect = 3.1e-202, Sum P(3) = 3.1e-202
Identities = 401/1007 (39%), Positives = 610/1007 (60%)
Query: 1054 LQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV 1113
+ NEV L G D VR A L A+ ++ E+I W+ HD +
Sbjct: 1066 INENEVNVLLKGTIVSDPSVRSAVLQAIDAEIDLTDMDFSEHI------WLECHDHVEEN 1119
Query: 1114 AEAAEDIWDRYGYDFG-TDYSGLFKALSHSNYNVRXXXXXXXXXXXDEYPDSIQGSL-ST 1171
AE AE IW+ G + T Y L L + N+R E S+ G + S
Sbjct: 1120 AEIAESIWEENGLEIDETAYGKLIPYLDSRDSNLRGAAARAIAHAI-ESNHSVFGDIISQ 1178
Query: 1172 LFSLYIRDI----------GLGG--DNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTF 1219
L S Y +I G+ D D W R GIALA + ++ + + F
Sbjct: 1179 LQSKYEFEIRPKEPEKDKYGMPKKVDTTDH-WESRSGIALAFGAMQNLFEGDQIVSFLRF 1237
Query: 1220 LISRA-LADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVRE 1278
LI R L D ++ VR +M ++G +I G++ V L + E L E DL+ E
Sbjct: 1238 LIERGPLIDRSSVVRDQMADSGKGVIAARGQEKVEELMKLLETTLETSDKGSETSDLLNE 1297
Query: 1279 GVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
VV+ G+LA+HL DDP++ V+ +LL L TPSE+VQ AVS CL PL++ ++
Sbjct: 1298 AVVVLYGSLAQHLKSDDPRLQTVIKRLLATLPTPSESVQSAVSDCLPPLIRLAGRQSGKY 1357
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+LDQ+++S Y +RGAA+GLAG+VKG GI +L+++ + L++ ++ +R G
Sbjct: 1358 AQEMLDQILQSKDYATQRGAAYGLAGIVKGRGIVTLREFRVMPHLQDAAENKKEPHKRLG 1417
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKL 1458
AL+A+E LGR +EPYVIQ++P LL +F D S LS+ GVK
Sbjct: 1418 ALMAYELFATILGRTYEPYVIQVVPQLLTSFGDPNADVREACLYTAKACFSNLSSYGVKK 1477
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP+LL+GL+D WR+++ + LLGAMAY PQQL+ LP+I+P LT VL DTH +V++A
Sbjct: 1478 ILPTLLEGLDDTQWRSQKGACDLLGAMAYLDPQQLAVSLPEIIPPLTVVLNDTHKEVRNA 1537
Query: 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
+LQ+ G VI NPEI SLV LL L+DP T +LD L++ +FV+ +DAPSLAL+V
Sbjct: 1538 ANRSLQRFGEVISNPEIKSLVNVLLKALSDPTKFTDEALDALIKVSFVHYLDAPSLALVV 1597
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
I+ RGL +RSA TK+K+AQI+G++ L TE KD+I ++ +++ + +VDP+P R+
Sbjct: 1598 RILERGLGDRSA-TKRKSAQIIGSLAHL-TERKDLITHLPIIVSGLNLAIVDPVPTTRAT 1655
Query: 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698
A++A+GSLI +GE+ PDL+ L+ LKSD +R G+AQ LSEVLA LGT E L
Sbjct: 1656 ASKALGSLIEKLGEDALPDLIPNLMSTLKSDTGAGDRLGSAQALSEVLAGLGTTRLEETL 1715
Query: 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758
P I++N S +A++R+G++TLF YLP G F YL +++P IL GLAD+ +++R+ +L
Sbjct: 1716 PTILQNVSSSKATIREGFMTLFIYLPACFGNSFAPYLGRIIPPILAGLADDVDTIRETSL 1775
Query: 1759 GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGG 1818
AG +LV+++++ ++ LLLP +E G+ +D++RIR SSVEL+GDLLF + G + K E
Sbjct: 1776 RAGRLLVKNFSSKAIDLLLPELERGLADDSYRIRLSSVELVGDLLFSITGITAKT--EAE 1833
Query: 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878
+DE A+ +A G++++EVLG ++R++VL+AL++ R D S V+ AA+ VWK++VA+ P+T
Sbjct: 1834 EEDEEAA-QA-GQSLLEVLGEERRDKVLSALFICRCDTSGLVKTAAMGVWKSLVAS-PRT 1890
Query: 1879 LKEIMPVLMNTLIXXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLK-DPSA 1937
LKE++P L +I E++ +A ALG+L++K GE VL +++P L GL+ P
Sbjct: 1891 LKEMVPTLSQLIIRRLGSSNMEQKVIASNALGDLIKKAGESVLATLLPTLEDGLQTSPDV 1950
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+QG+CI L E++AS+ L + LI +R AL D+ +VRE+A AF L + G
Sbjct: 1951 DVKQGICIALKEIIASSSPDALEDYEKILISIVRVALVDNDDDVREAAAEAFDALQQILG 2010
Query: 1998 MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA--VLPHILP 2042
+A+D+++P LL L +D+ ++ AL L +L+ +T A +LP+++P
Sbjct: 2011 KKAVDQVLPHLLLLLRNDEDAEQALSALLTLLTEQTRANIILPNLIP 2057
|
|
| UNIPROTKB|G4MR95 MGG_04710 "Translational activator GCN1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 1846 (654.9 bits), Expect = 9.5e-201, Sum P(2) = 9.5e-201
Identities = 438/1224 (35%), Positives = 673/1224 (54%)
Query: 851 SIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQL-PSLVKFVDPLLQSP--IVGDVAYE 907
+IRE+V+GV + + + +A P A + P++ +D + I GD A
Sbjct: 858 AIRERVRGVAAKVMRGVGVIKSLATGPPTDATLWMGPAVNALLDAVDAGACLITGDAAPT 917
Query: 908 ALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVN 967
A + + + L ++ I A T H +L+P E K + L R++
Sbjct: 918 AYLACADRVSSRLGSFRQFIGVA-----TLRAH-GVELLP---ENLKAEPFEDLVTRVMY 968
Query: 968 GLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDD-----VL--QMLYKHMDXXXXX 1020
L + + P V S ++ P+ IL +D VL ++L H D
Sbjct: 969 RLRFAGEQRPFDVVSVNYMLPLALLILNKGGFGATAEDRDTHLVLATELLSFHTDTASSE 1028
Query: 1021 XX--XXMISVLYHVLGVVPSYQAAIGSALNELCLGLQPN----EVASALHGVYTKDVHVR 1074
M+ L + V + I +++ + PN E+ G VR
Sbjct: 1029 ALPRAQMLETLISSMQVYNQHYKIIRDCFSDMVRCVAPNISEKEIGVVARGAIVPQTSVR 1088
Query: 1075 MACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYS- 1133
L ++ +S +E S +WIA H+ + E A++IW+ G+ D
Sbjct: 1089 TTVLQSISADVDMS------ELEFSEEIWIAYHEDSEENVELAKEIWEESGFQTSKDVPV 1142
Query: 1134 GLFKALSHSNYNVRXXXXXXXXXXXDEYPDSIQGSLSTLFSLYIR----------DIGLG 1183
+ L + +R +P+++ L L Y+ + G+
Sbjct: 1143 KMLPYLESKDGQLRKAASRALAEACSNHPETVNLILEKLRLAYVEFAKPRVPELDEFGMP 1202
Query: 1184 GD-NVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRA-LADTNADVRGRMLNAGI 1241
++ W R GIA + A L+ + L FLI + L D N VR ML A
Sbjct: 1203 KKMDLSDPWEARHGIASSFKELAPYLKREHLDSFFAFLIEQGPLGDQNGSVRAEMLEAAN 1262
Query: 1242 MIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301
I+ HG+ V L FE L D V E V+I GALA+HL D K+ V
Sbjct: 1263 KAIEIHGKGMVDKLMKTFETTLEAPDKGSAAADRVNEAVIIMYGALARHLKAGDAKIPVV 1322
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFG 1361
+++L+ L+TPSEAVQ A++ CL PL+++ +++ +++ L+ S Y +RGAA+G
Sbjct: 1323 IERLIATLSTPSEAVQYAIAECLPPLVKACGNKSSKYFDEIMETLLTSKNYAVQRGAAYG 1382
Query: 1362 LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM 1421
LAG+V G GI+SL+++ I + L L ++ A +RE ALLA+E L LGRLFEPYVI +
Sbjct: 1383 LAGLVLGRGIASLREFRIMSNLHSALENKKEANQRESALLAYELLATILGRLFEPYVILI 1442
Query: 1422 LPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481
+P LL F D ++LS+ GVK +LP+LL+GL+D WR+K+ + L
Sbjct: 1443 VPQLLAGFGDSNANVRDAALASAKACFARLSSYGVKQILPTLLRGLDDDQWRSKKGACDL 1502
Query: 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541
LGAMAY PQQL+ LP+I+P LT VL D+H +V+S +L++ G VI NPE+ LV
Sbjct: 1503 LGAMAYLDPQQLALSLPEIIPPLTAVLNDSHKEVRSGANKSLKRFGEVISNPEVKGLVDI 1562
Query: 1542 LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVG 1601
LL L+DP +T +LD L++ FV+ +DAPSLAL+ I+ RGL +RS TK+KA+Q++G
Sbjct: 1563 LLKALSDPTKYTDEALDSLIKVQFVHYLDAPSLALVSRILQRGLADRS-NTKRKASQVIG 1621
Query: 1602 NMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSW 1661
++ L TE KD++ ++ +L+ +K +VDP+P R+ A+RA+GSL+ +GEE PDL+
Sbjct: 1622 SLAHL-TERKDLVSHLPVLVAGLKIAVVDPVPTTRATASRALGSLMEKLGEEALPDLIPG 1680
Query: 1662 LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK 1721
L+ LKSD +R G+AQ LSEVLA LGT E LP I++N + +VR+G+++LF
Sbjct: 1681 LMQTLKSDTGAGDRLGSAQALSEVLAGLGTTRLEETLPTILQNVESSKPAVREGFMSLFI 1740
Query: 1722 YLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781
+LP G F NYL +++P IL GLAD+ E++R+ AL AG +LV+++A ++ LLLP +E
Sbjct: 1741 FLPVCFGNSFANYLGRIIPPILSGLADDIEAIRETALKAGRLLVKNFAVRAVDLLLPELE 1800
Query: 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841
G+ +D++RIR SSVEL+GDLLF + G SGK E G +DE + G ++ E LG +K
Sbjct: 1801 RGLADDSYRIRLSSVELVGDLLFNLTGISGKT--EDGDEDEEEKVKEAGNSLREALGDEK 1858
Query: 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXER 1901
RN++L+ALY+ R D + SVR AA+ VWK +V++ PKTLKE++P L +I E
Sbjct: 1859 RNKILSALYICRCDTATSVRAAAVAVWKALVSS-PKTLKELVPTLTQLIIRRLGSTNMEH 1917
Query: 1902 RQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS-ASRRQGVCIGLSEVMASAGKSQLL 1960
+ +A ALGEL+RK G+ VL S++P L GL+ + RQG+C+ L E+++SA + L
Sbjct: 1918 KVIASNALGELIRKAGDNVLSSLLPTLEEGLQTSTDVDARQGICLALKELISSASEEALE 1977
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT 2020
LI +RTAL DS EVRE+A AF +L + G +A+D+++P LL+ L + ++
Sbjct: 1978 EHEKILISVVRTALTDSDTEVREAAAEAFDSLQQILGKRAVDQVLPFLLNLLRSEDEAEN 2037
Query: 2021 ALDGLKQILS--VRTTAVLPHILP 2042
AL L +L+ R+ +LP+++P
Sbjct: 2038 ALSALLTLLTETTRSNIILPNLIP 2061
|
|
| POMBASE|SPAC18G6.05c SPAC18G6.05c "translation elongation regulator Gcn1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1787 (634.1 bits), Expect = 2.6e-196, Sum P(4) = 2.6e-196
Identities = 361/862 (41%), Positives = 568/862 (65%)
Query: 1188 DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALAD-----TNAD--VRGRMLNAG 1240
D G + R+ +A++ + L + L + FL++ + A+ T+A V +ML AG
Sbjct: 1204 DLGRIARESVAVSFFHISKYLSSNLLLPFLEFLLTASEAEAQIPVTDASQKVSSKMLEAG 1263
Query: 1241 IMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHA 1300
+ I + G V L +FE LN + + D +RE V+ G +A+HL +DP++
Sbjct: 1264 KLAIFQSGAHQVEALMELFEQKLNVDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAV 1323
Query: 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360
V+D LL VL+TPSE+VQ AV+ CL PL++ ++ L ++LM S +++GAA+
Sbjct: 1324 VMDSLLSVLSTPSESVQLAVAVCLPPLVKKSLGKSKEYYELLSNKLMNSTSLADQKGAAY 1383
Query: 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420
GLAG+VKG+GI + + + I +L E +++R +A R+ AL A E LG FEPY+
Sbjct: 1384 GLAGLVKGYGIKAFQDFNILDSLSELISNRQNATHRQVALFAVEAFSRILGIYFEPYLPD 1443
Query: 1421 MLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
+LPLLL +F D +MSQLSA GVKL+LP+LL GL + WR+K++SV+
Sbjct: 1444 LLPLLLTSFGDNANEVREATMDAVKQIMSQLSAFGVKLLLPTLLDGLNEYNWRSKKASVE 1503
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
+LG M+Y AP+QLS LP I+PKL+EVLTD+H +V++ +L + G VI NPEI +LVP
Sbjct: 1504 ILGLMSYMAPKQLSVFLPTIIPKLSEVLTDSHSQVRNTANKSLLRFGDVISNPEIQTLVP 1563
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600
TLL L+D +T +L+ LL+T+FV+ +D PSLAL++PI+ GLRER+A TK+++A+I
Sbjct: 1564 TLLKALSDCTRYTDDALEALLKTSFVHYLDPPSLALVIPILKYGLRERNAGTKRQSAKIF 1623
Query: 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660
G M SL TEP+++ Y+ L+P +++VL+DP+P+ R+ AA+A+GSLI +GE+ FP L+
Sbjct: 1624 GLMASL-TEPENLAVYLESLMPRLREVLIDPVPDTRATAAKALGSLIEKLGEKKFPTLIP 1682
Query: 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 1720
L + L+S+ S V+R GAAQGLSE+LA LG E +LP+I++N S +R+ +++L
Sbjct: 1683 ELFNVLRSECSEVDRQGAAQGLSEILAGLGLARLEDVLPEILKNTSSPVPHIRESFISLL 1742
Query: 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAV 1780
YLP + G +FQ YL + +P IL GLAD++E V+ A+L A ++V +YAT S+ LLLP +
Sbjct: 1743 IYLPATFGSRFQPYLARAIPPILSGLADDSELVQTASLRAAKMIVNNYATKSVDLLLPEL 1802
Query: 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1840
E G+F++ WRIR SSV+L+GDL+FK+AG + KAL E ++EG ++ +A+++++G++
Sbjct: 1803 EKGLFDNAWRIRLSSVQLVGDLVFKLAGINRKALQED-EEEEGTHSDVSRKALLDIIGQE 1861
Query: 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIXXXXXXXXE 1900
+ + +L+ LY+VR D++ VR A+ +WK IV NTP+T++EI+P L + ++ +
Sbjct: 1862 RHDRILSTLYIVRQDIAAVVRTPAIQIWKAIVVNTPRTVREILPTLTSIIVSNLNSSSND 1921
Query: 1901 RRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
RR + ++LG+L++K G VLP ++P+L +GL+ ++ R GVCI L E++ SA QL
Sbjct: 1922 RRTMCVKSLGDLLKKAGFDVLPQLLPVLKQGLESANSGDRIGVCIALEELINSATPEQLE 1981
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDT 2020
+ D+ + +R AL D LEVRE+A AF +L G +A+D+++P LL LE + S+
Sbjct: 1982 IYSDDFVYAVRRALMDGDLEVRETAAEAFDSLQSILGDRAVDDVLPQLLKLLESENQSEQ 2041
Query: 2021 ALDGLKQILSVRTTAVLPHILP 2042
AL L++I+S R++ + P ++P
Sbjct: 2042 ALSALREIISRRSSTIFPVLIP 2063
|
|
| UNIPROTKB|F1RJK5 GCN1L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1894 (671.8 bits), Expect = 1.5e-195, P = 1.5e-195
Identities = 368/692 (53%), Positives = 495/692 (71%)
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
ER+GAA+GLAG+VKG GI SLK+ + A L + + D+ + +RREGAL AFE LC LG+L
Sbjct: 2 ERKGAAYGLAGLVKGLGILSLKQQEMMAALTDAIQDKKNFRRREGALFAFEMLCTMLGKL 61
Query: 1414 FEPYVIQMLPLLLVAFSDQXXXXXXXXXXXXXXMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
FEPYV+ +LP LL+ F D +MS LSA GVKLVLPSLL LE+++WR
Sbjct: 62 FEPYVVHVLPHLLLCFGDGNQYVREAADDCAKAVMSNLSAHGVKLVLPSLLAALEEESWR 121
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533
TK SV+LLGAMAYCAP+QLS CLP IVPKLTEVLTD+H KVQ AGQ AL+Q+GSVI+NP
Sbjct: 122 TKAGSVELLGAMAYCAPKQLSSCLPNIVPKLTEVLTDSHVKVQKAGQQALRQIGSVIRNP 181
Query: 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593
EI ++ P LL LTDP+ T+ L LL T FV+ +DAPSLAL++PIV R ++RS +T+
Sbjct: 182 EILAIAPVLLDALTDPSRKTQKCLQTLLDTKFVHFIDAPSLALIMPIVQRAFQDRSTDTR 241
Query: 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
K AAQI+GNM SL T+ KD+ PY+ + P +K L+DP+PEVR+V+A+A+G++++GMGE
Sbjct: 242 KMAAQIIGNMYSL-TDQKDLAPYLPSVTPGLKASLLDPVPEVRTVSAKALGAMVKGMGES 300
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRAS-- 1711
F DL+ WL++ L + S+V+RSGAAQGL+EV+A LG E ++P+I+ S +
Sbjct: 301 CFEDLLPWLMETLTYEQSSVDRSGAAQGLAEVMAGLGVEKLEKLMPEIVATASKVDIAPH 360
Query: 1712 VRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771
VRDGY+ +F YLP + G +F Y+ ++P IL LADENE VRD AL AG ++ YA T
Sbjct: 361 VRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAET 420
Query: 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831
++ LLLP +E G+F+D WRIR SSV+LLGDLLF ++G +GK E S+D+ T +
Sbjct: 421 AIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNK 480
Query: 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891
AII LG D+RN VLA LYM RSD L VRQA+LHVWK +V+NTP+TL+EI+P L L+
Sbjct: 481 AIITALGVDRRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLL 540
Query: 1892 XXXXXXXXERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951
++R +A R LG+LVRKLGE++LP IIPIL GL+ + RQGVCIGLSE+M
Sbjct: 541 GFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIM 600
Query: 1952 ASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHA 2011
S + +L F + L+PT R ALCD + EVRE+A F L + G QA+++I+P LL
Sbjct: 601 KSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQ 660
Query: 2012 LEDDQTSDTALDGLKQILSVRTTAVLPHILPK 2043
L+D++ S+ ALDGLKQ++++++ VLP+++PK
Sbjct: 661 LDDEEVSEFALDGLKQVMAIKSRVVLPYLVPK 692
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2058 | |||
| pfam12074 | 329 | pfam12074, DUF3554, Domain of unknown function (DU | 5e-30 |
| >gnl|CDD|221409 pfam12074, DUF3554, Domain of unknown function (DUF3554) | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 5e-30
Identities = 82/354 (23%), Positives = 132/354 (37%), Gaps = 40/354 (11%)
Query: 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKR 405
P Q+ + NAL L S+S +I LL E NE A+LSA
Sbjct: 1 PDQKALIANALSALPVF-------SVSPSIVDGLLPLLSKESNEAALNALLSAFGKHLFF 53
Query: 406 SADIIQSDLLSFFASGLKEKEA-LRRGHLRCLRVICTNTDAVLQ-VSSLLGPLIQLVKTG 463
+ + D++ GL EK+ LR+ L L N A L + L L++++K
Sbjct: 54 LTEEVPDDVVDAIKKGLAEKKPPLRKIWLLSLGEALWNNSASLPLIEDFLPKLLKILKEA 113
Query: 464 FTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPS-LVPTAMIS 517
+ + L G Y L + + K WSLV +PS L+ S
Sbjct: 114 ASNPLPAAQNGTLSGAYVLLSLTPSLSK--------KLIKFWSLVLDPKPSFLLSPKFYS 165
Query: 518 KLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHDATR 575
KLS +D + L L H + E Q + P W++RK A +
Sbjct: 166 KLSDEDLCWVLRALEALFSGHPSELAEDKIA--WGQAWIYVLLSPSLPWEVRKRALQLLK 223
Query: 576 KIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLV 634
K+++S P L+ +++ N+L K S + + + S +
Sbjct: 224 KLLSSNPGVLANSIISALWNWLEAHELG---PKESSIESTSLKFLTPVFSALSLALSEKD 280
Query: 635 IASVALARGPSASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVS 688
A +++ ++ +HHP I W L CLR+ G + E+V
Sbjct: 281 SADISIGLEKLLV-SLLVLAHHPLIPIVS-----WIGL--CLRS-GLDPGELVR 325
|
This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with pfam02985. Length = 329 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2058 | |||
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 100.0 | |
| PF12074 | 339 | DUF3554: Domain of unknown function (DUF3554); Int | 100.0 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 100.0 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.97 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.97 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.97 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.96 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.96 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.94 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.94 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.92 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.9 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.89 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.88 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.87 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.85 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.84 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 99.78 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.52 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.51 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.51 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 99.46 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.44 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 99.43 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.4 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.4 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.4 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.39 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.38 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.38 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 99.38 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.36 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 99.27 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.25 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 99.21 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.03 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.93 | |
| KOG1992 | 960 | consensus Nuclear export receptor CSE1/CAS (import | 98.92 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.91 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 98.89 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 98.84 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 98.81 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.81 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.81 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.8 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 98.79 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.79 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 98.78 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 98.76 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.74 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 98.68 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 98.67 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 98.67 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.67 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 98.6 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.59 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.58 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.57 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 98.54 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 98.47 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.47 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.46 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 98.44 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 98.42 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.41 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 98.39 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.33 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.33 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 98.29 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 98.29 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 98.26 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 98.25 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.24 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 98.22 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.22 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.21 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 98.14 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 98.12 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 98.11 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 98.09 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 98.05 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.05 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 98.05 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 98.02 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 97.98 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 97.96 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 97.93 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.93 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 97.85 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.82 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.75 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 97.72 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.72 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.71 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 97.68 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 97.67 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 97.66 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 97.59 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.58 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.58 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 97.57 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.46 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.44 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 97.44 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.44 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.38 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.37 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 97.32 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.29 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 97.27 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 97.21 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 97.16 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 97.14 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.1 | |
| KOG1993 | 978 | consensus Nuclear transport receptor KAP120 (impor | 97.1 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 97.09 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.06 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 97.05 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.03 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 97.0 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.98 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 96.97 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.97 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 96.96 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 96.94 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 96.94 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 96.86 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 96.79 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 96.78 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 96.76 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 96.6 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 96.56 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 96.51 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 96.51 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 96.44 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 96.36 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 96.33 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 96.25 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.23 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 96.18 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 96.17 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.13 | |
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 96.12 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 96.07 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 96.05 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 96.04 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 95.99 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 95.96 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 95.95 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 95.95 | |
| PF08506 | 370 | Cse1: Cse1; InterPro: IPR013713 The exchange of ma | 95.89 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 95.88 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 95.82 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 95.81 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 95.8 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 95.76 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 95.68 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 95.43 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 95.39 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 95.38 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 95.25 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 95.06 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 94.98 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 94.93 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 94.88 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 94.8 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 94.71 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 94.67 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 94.63 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 94.6 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 94.59 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 94.54 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 94.47 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 94.34 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 94.26 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 94.21 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 93.89 | |
| PF03378 | 435 | CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I | 93.6 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 93.6 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 93.6 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 93.39 | |
| KOG2137 | 700 | consensus Protein kinase [Signal transduction mech | 93.0 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 92.86 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 92.82 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 92.43 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 92.32 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 92.32 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 91.88 | |
| KOG1851 | 1710 | consensus Uncharacterized conserved protein [Funct | 91.8 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 91.78 | |
| KOG1822 | 2067 | consensus Uncharacterized conserved protein [Funct | 91.66 | |
| COG5095 | 450 | TAF6 Transcription initiation factor TFIID, subuni | 91.41 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 91.37 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 91.22 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 91.17 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 91.11 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 90.91 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 90.84 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 90.77 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 90.61 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 90.58 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 90.1 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 90.02 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 89.71 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 89.6 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 89.46 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 89.4 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 89.24 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 88.91 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 88.58 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 88.52 | |
| cd08050 | 343 | TAF6 TATA Binding Protein (TBP) Associated Factor | 88.15 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 87.91 | |
| PF08161 | 198 | NUC173: NUC173 domain; InterPro: IPR012978 This is | 87.84 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 87.83 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 87.62 | |
| KOG2005 | 878 | consensus 26S proteasome regulatory complex, subun | 87.28 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 87.13 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 86.73 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 85.39 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 85.04 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 83.96 | |
| KOG2213 | 460 | consensus Apoptosis inhibitor 5/fibroblast growth | 83.56 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 82.54 | |
| PF08161 | 198 | NUC173: NUC173 domain; InterPro: IPR012978 This is | 82.5 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 82.28 | |
| KOG2021 | 980 | consensus Nuclear mRNA export factor receptor LOS1 | 81.89 | |
| COG5234 | 993 | CIN1 Beta-tubulin folding cofactor D [Posttranslat | 80.98 | |
| PF08389 | 148 | Xpo1: Exportin 1-like protein; InterPro: IPR013598 | 80.95 | |
| PF12054 | 441 | DUF3535: Domain of unknown function (DUF3535); Int | 80.72 | |
| KOG2081 | 559 | consensus Nuclear transport regulator [Intracellul | 80.11 |
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=530.56 Aligned_cols=562 Identities=50% Similarity=0.759 Sum_probs=525.4
Q ss_pred HHHhhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHH
Q 000143 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2058)
Q Consensus 1201 l~~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~a 1280 (2058)
++.+...+...+....+.|++..| +|+++.||..|++++..+++.+|.++...++|.|++.|... .++.+|++.
T Consensus 3 ~k~~~~~~s~~~~~~~~~~~~~~g-~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~-----~~~~~~~~~ 76 (569)
T KOG1242|consen 3 LKKEKKLLSRHDDGPGLLFLVSAG-EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL-----HNDNLRNNV 76 (569)
T ss_pred hhHHHHHhhhhcccccceeecccC-CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc-----hhHHHhhhh
Confidence 344444444444444577777667 99999999999999999999999999999999999998772 256899999
Q ss_pred HHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000143 1281 VIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAF 1360 (2058)
Q Consensus 1281 v~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~ 1360 (2058)
+...|.++.|+...||+...++..++..+.+|++.||++++.|++++...........+..++..+++..+...|.++++
T Consensus 77 ~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~ 156 (569)
T KOG1242|consen 77 VVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAY 156 (569)
T ss_pred HHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999887755555666666666666778999999999
Q ss_pred HHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHH
Q 000143 1361 GLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440 (2058)
Q Consensus 1361 ~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA 1440 (2058)
++++++++.|...+.+..++..+...+.|+++...|++++.++...+..+|..++||+..++|.++.+++|..+.||++|
T Consensus 157 ~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 157 GLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAA 236 (569)
T ss_pred HHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHH
Confidence 99999999999999888999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHH
Q 000143 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQ 1520 (2058)
Q Consensus 1441 ~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~ 1520 (2058)
..+.+.++..++.++++.++|.++..+.+..|+++.++++.+|.|+++.|++++.+++.++|.+.+.+.|++++||+++.
T Consensus 237 ~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~ 316 (569)
T KOG1242|consen 237 VEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGI 316 (569)
T ss_pred HHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHH
Q 000143 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIV 1600 (2058)
Q Consensus 1521 ~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l 1600 (2058)
.++.++++++.|++++.++|.|++++.||+.++.+|++.+++++|++++++|+++.++|++.+++.+++..++++++.++
T Consensus 317 ~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~Ii 396 (569)
T KOG1242|consen 317 ETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIII 396 (569)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHH
Q 000143 1601 GNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680 (2058)
Q Consensus 1601 ~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~ 1680 (2058)
+|||..+.|+.++.||++.++|.+...+.|+.|++|..+++|+|.+.+.+|+.+|++.+|++.+.+..+.....|.++++
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq 476 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQ 476 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhh
Confidence 99999998999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHhchhHHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHH
Q 000143 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAAL 1758 (2058)
Q Consensus 1681 ~L~~i~~~~g~~~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~ 1758 (2058)
.+++++.+.|.++..+++|.++...... ++.+|.+.++++..++..+|..|.+|+..+++.+++.+.|.++.+|..+.
T Consensus 477 ~l~evl~~~~v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~~~~~~ 556 (569)
T KOG1242|consen 477 DLSEVLAGLGVEKVEDILPEILANASSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKGRDTAL 556 (569)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHhhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCccccchh
Confidence 9999999999999999999999888765 67799999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHh
Q 000143 1759 GAGHVLVEHY 1768 (2058)
Q Consensus 1759 ~al~~lv~~~ 1768 (2058)
++...+..++
T Consensus 557 ~~~~~~~~~~ 566 (569)
T KOG1242|consen 557 EAGEVEVLNY 566 (569)
T ss_pred hhhhhhhccc
Confidence 8887765443
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-45 Score=466.97 Aligned_cols=854 Identities=20% Similarity=0.252 Sum_probs=582.3
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcCCCC
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYDF 1128 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~~~~ 1128 (2058)
..+.+|++.+++||+++|+.|+++|+..+... . .......+..+..++++|++|.. .|.....++
T Consensus 4 ~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~-----~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~ 76 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNEVRRQAEEALETLAKTE-----P--LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEV 76 (1075)
T ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHHhhccc-----c--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 46889999999999999999999999887222 1 12222334677888999888754 688877677
Q ss_pred CCCH-HhHHHHhc-CCCHHHHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhh
Q 000143 1129 GTDY-SGLFKALS-HSNYNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAA 1205 (2058)
Q Consensus 1129 ~~~~-~~ll~~l~-~~~~~vR~aaa~aLa~~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~ 1205 (2058)
++.+ ..|+..+. .+...||++.+++++.+++.. |+.|+++++.|++... +.+...|..+...|..+.
T Consensus 77 ~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~----------S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 77 QQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTK----------SPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhc----------CCCcchhHHHHHHHHhhh
Confidence 7777 77887665 568899999999999999764 6689999999998742 233468999999888887
Q ss_pred hhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q 000143 1206 DVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTG 1285 (2058)
Q Consensus 1206 ~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg 1285 (2058)
..+++...+ ++..+.++|.+++.++. +.||..++.+++
T Consensus 147 ~~~~~~~~~------------------------------------~~~~l~~lf~q~~~d~s------~~vr~~a~rA~~ 184 (1075)
T KOG2171|consen 147 ETFGNTLQP------------------------------------HLDDLLRLFSQTMTDPS------SPVRVAAVRALG 184 (1075)
T ss_pred hhhccccch------------------------------------hHHHHHHHHHHhccCCc------chHHHHHHHHHH
Confidence 777665433 22333444444444310 124445555555
Q ss_pred HHHhHhccC---CcchHHHHHHHHhhhC----CCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHH
Q 000143 1286 ALAKHLAKD---DPKVHAVVDKLLDVLN----TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGA 1358 (2058)
Q Consensus 1286 ~La~~l~~~---~p~i~~iv~~Ll~~L~----~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~A 1358 (2058)
.++.+++.. .+++..++|.++..+. +.+......+.+++..++...+.-+..++.
T Consensus 185 a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~------------------ 246 (1075)
T KOG2171|consen 185 AFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS------------------ 246 (1075)
T ss_pred HHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH------------------
Confidence 555444310 1223344444443332 222222222233332222211111111111
Q ss_pred HHHHHHHHhhhCccccchhchHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhc---ccchhhHHHHHHHHHHHcCCCC-
Q 000143 1359 AFGLAGVVKGFGISSLKKYGIAATLREGLADR-NSAKRREGALLAFECLCEKLG---RLFEPYVIQMLPLLLVAFSDQV- 1433 (2058)
Q Consensus 1359 a~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~-~~~~~R~~al~al~~L~~~lg---~~~~p~l~~llp~Ll~~l~D~~- 1433 (2058)
.++.+..+...++ .+...|+.|+..+..+++..+ +...+|...+++.++..+.|..
T Consensus 247 -------------------~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~ 307 (1075)
T KOG2171|consen 247 -------------------QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEED 307 (1075)
T ss_pred -------------------HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCccc
Confidence 2333333333332 256677777777777777632 4455677788888887765321
Q ss_pred ---------------HHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1434 ---------------VAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1434 ---------------~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
......|.+++++++.+++++.+ ..+++.+-..+.+.+|+.|++++.+|+.++++|++.+...+
T Consensus 308 D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l 387 (1075)
T KOG2171|consen 308 DDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL 387 (1075)
T ss_pred chhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 23566789999999999998876 88888888999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch----hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhh
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~ 1573 (2058)
+.|++.+++.++|+||+||.+||.|+|+++..+... +.+.+.|.|+..+.++
T Consensus 388 ~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~------------------------ 443 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST------------------------ 443 (1075)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc------------------------
Confidence 999999999999999999999999999999877531 1123333333333332
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhH-HHHHhhCCCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1574 l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~-~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
.++++...|+.++.++.+- .+...+.||++.+|. .+..+.+.+.+.+++.+..+||+++...++
T Consensus 444 --------------~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 444 --------------QNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred --------------CchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 2356777777777777764 455778999999999 666677788999999999999999999998
Q ss_pred c---CccchHHHHHhhcccCCC---hHHHhhHHHHHHHHHHHhchhHH----HHhhHHHHHh---hccCChhHHHHHHHH
Q 000143 1653 E---NFPDLVSWLLDALKSDNS---NVERSGAAQGLSEVLAALGTVYF----EHILPDIIRN---CSHQRASVRDGYLTL 1719 (2058)
Q Consensus 1653 ~---~~~~llp~L~~~L~~d~~---~~~R~~aa~~L~~i~~~~g~~~l----~~llp~Ll~~---l~~~~~~vR~~al~~ 1719 (2058)
. ||+.+||.|.+.|.+... ...|-.+..+++.+..++|++.+ ++++..++.. ..+.+...|+..+..
T Consensus 509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~ 588 (1075)
T KOG2171|consen 509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAF 588 (1075)
T ss_pred hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHH
Confidence 7 899999999999975442 34556678899999999998855 4566655555 344578899999999
Q ss_pred HHHhHHHhchhHHHhHHHHHHHHHHhcc--------CCCH---------------------HH-------HHHHHHHHHH
Q 000143 1720 FKYLPRSLGVQFQNYLQQVLPAILDGLA--------DENE---------------------SV-------RDAALGAGHV 1763 (2058)
Q Consensus 1720 l~~la~~~g~~f~pyl~~ilp~Ll~~L~--------d~~~---------------------~V-------R~~a~~al~~ 1763 (2058)
++.+|+.+|++|.||++.++|++++..+ |+++ .| +..|+.++..
T Consensus 589 warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~ 668 (1075)
T KOG2171|consen 589 WARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGE 668 (1075)
T ss_pred HHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHH
Confidence 9999999999999999999999997542 1110 01 3456666666
Q ss_pred HHHHhcccch---hchHH-hHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCc--cc------------ccccC-CCCCCCc
Q 000143 1764 LVEHYATTSL---PLLLP-AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS--GK------------ALLEG-GSDDEGA 1824 (2058)
Q Consensus 1764 lv~~~~~~~l---~~llp-~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~--~k------------~~~~~-~~e~~~~ 1824 (2058)
+....+..-. ...++ .+....+..+..+|.+++++++.++.+.-..+ ++ ..... ..|.+..
T Consensus 669 ~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~ 748 (1075)
T KOG2171|consen 669 YAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETE 748 (1075)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHH
Confidence 6555444321 22222 11122345678999999999999986542111 11 00101 1122222
Q ss_pred chHHHHH---HHHHHhCh-----hhHHHHHHHHH--------Hh--h------cC-----------CCHHHHHHHHHHHH
Q 000143 1825 STEAHGR---AIIEVLGR-----DKRNEVLAALY--------MV--R------SD-----------VSLSVRQAALHVWK 1869 (2058)
Q Consensus 1825 ~~e~~~~---~l~~~Lg~-----~~~~~vL~~L~--------~~--~------~D-----------~~~~VR~aA~~~l~ 1869 (2058)
..-...+ ..++..|. +.....+..+. .+ + .| .+..+-..+.+++.
T Consensus 749 vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~ 828 (1075)
T KOG2171|consen 749 VLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILA 828 (1075)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHH
Confidence 1111111 12233332 11111111111 10 0 11 11223344556777
Q ss_pred HHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc---hhhchHHHHhhhcCCCChhHHHHHHHH
Q 000143 1870 TIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIG 1946 (2058)
Q Consensus 1870 ~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~a 1946 (2058)
.++...+..+.+.+..+.+.++..+.+....-|+.|..++++++..+|+. +...++|.+..++.|.+++||++++++
T Consensus 829 ~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYG 908 (1075)
T KOG2171|consen 829 ALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYG 908 (1075)
T ss_pred HHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 77777777888888888888888888777666999999999999999976 467899999999999999999999999
Q ss_pred HHHHHHhhChhhhHhHHhhHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHhCh-hhHHHHHHHHHHhcCC---Cc
Q 000143 1947 LSEVMASAGKSQLLSFMDELIPTIRTALCDS------ILEVRESAGLAFSTLFKSAGM-QAIDEIVPTLLHALED---DQ 2016 (2058)
Q Consensus 1947 L~eii~~~~~~~l~~~~~~ll~~L~~~L~D~------d~~VR~~Aa~a~~~l~~~~g~-~~~~~ilp~Ll~~L~~---~~ 2016 (2058)
+|-+.... ++.+.+.....+|.|...+..+ +..+++||..||++++.+... ..+++++|.|+.+|+- .+
T Consensus 909 iGvlaq~~-g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~e 987 (1075)
T KOG2171|consen 909 MGVLAQFG-GEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKE 987 (1075)
T ss_pred HHHHHHHc-CcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchh
Confidence 99665544 4456777778888888877544 345789999999999877653 2489999999999983 34
Q ss_pred chHHHHHHHHHHHhhcCCccch---hhhhhhcc
Q 000143 2017 TSDTALDGLKQILSVRTTAVLP---HILPKLVH 2046 (2058)
Q Consensus 2017 ~~~~al~aL~~i~~~~~~~~lp---~lip~L~~ 2046 (2058)
+....+..|+++++.+++.++. ..+|+++.
T Consensus 988 Ea~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~ 1020 (1075)
T KOG2171|consen 988 EAVPIYTFLSDLYESNHPIVLGPNNQNIPKILS 1020 (1075)
T ss_pred hhhhHHHHHHHHHHhCCCeeeCCCcccchHHHH
Confidence 5668999999999887665544 25666543
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=364.80 Aligned_cols=809 Identities=19% Similarity=0.213 Sum_probs=555.0
Q ss_pred chHHHHHHHHHHhhcCCCCCCCHHhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCC
Q 000143 1110 EKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDA 1189 (2058)
Q Consensus 1110 ~~~~r~~a~~~w~~~~~~~~~~~~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~ 1189 (2058)
.+.++++|+....+ .|++-++.|++...++++..|+.|...|..+.+..+....+++..+...+.+.+.++
T Consensus 101 ~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~------ 171 (1075)
T KOG2171|consen 101 ADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDP------ 171 (1075)
T ss_pred HHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCC------
Confidence 34444555543332 464333889999999999999999999999999999888888888888887776653
Q ss_pred CchhhHHHHHHHHHhhhhhCCC--Ch-------HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc---cchhhHHH
Q 000143 1190 GWLGRQGIALALHSAADVLRTK--DL-------PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFP 1257 (2058)
Q Consensus 1190 ~~~~R~~~~~al~~l~~~~~~~--~~-------~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~---~~~~~Ll~ 1257 (2058)
+..+|.+++.|++.++...+.+ .+ |.++..+ +..+.+.+.+.-..++++..+++...++ .++.+++.
T Consensus 172 s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl-~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~ 250 (1075)
T KOG2171|consen 172 SSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVL-QEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQ 250 (1075)
T ss_pred cchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHh-HhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 2239999999999999988632 22 3333333 3567778888888899999998887654 33444444
Q ss_pred HHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccC----CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc
Q 000143 1258 IFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD 1333 (2058)
Q Consensus 1258 ~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~----~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~ 1333 (2058)
+.... +.+.+-.+.+|..|++++..++++-+.. .++.+.+++.++..+.+-..+
T Consensus 251 ~~l~I----a~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D------------------ 308 (1075)
T KOG2171|consen 251 FSLEI----AKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD------------------ 308 (1075)
T ss_pred HHHHH----hhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc------------------
Confidence 44444 3444445579999999999999862211 234444554444443322111
Q ss_pred chHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000143 1334 EAPTLVSRLLD--QLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2058)
Q Consensus 1334 ~~~~~v~~Ll~--~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg 1411 (2058)
+.-.+ .+.+++.....+.|.+++..++.++|++.+- +.+++.+.+.+++. +|..|++++++++.++++++
T Consensus 309 ------~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~-p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~ 380 (1075)
T KOG2171|consen 309 ------DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL-PPLFEALEAMLQST-EWKERHAALLALSVIAEGCS 380 (1075)
T ss_pred ------hhhccccccccccccCcHHHHHHHHHHHHhcCChhheh-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccH
Confidence 00000 0111112345678899999999999998874 57899999999998 99999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH----HhHHHHHHHhccCC-ChHHHHHHHHHHHHHH
Q 000143 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1412 ~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v----~~llp~Ll~~L~~~-~~~~R~~a~~~Lg~la 1486 (2058)
+.+.+.++++++.+++.+.|++|.||.+|+.|++++...+.++.- ..+.|.+...+++. +.++..+|+.++-++.
T Consensus 381 ~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~ 460 (1075)
T KOG2171|consen 381 DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFS 460 (1075)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988643 55677788888765 5788888888888877
Q ss_pred hhCh-hhHhhhhhhHHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHH
Q 000143 1487 YCAP-QQLSQCLPKIVP-KLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2058)
Q Consensus 1487 ~~~p-~~l~~~L~~Iip-~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~vr~al~~L~ 1561 (2058)
+.++ +.+.+||+.++. .+..+++...+.||+.+..+++.++...++ ||++.++|.|...+...+..
T Consensus 461 E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~--------- 531 (1075)
T KOG2171|consen 461 EECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDK--------- 531 (1075)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCch---------
Confidence 7665 569999999999 455556677899999999999999998775 67888888888877665421
Q ss_pred hccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHh---hCCCCHHHHHH
Q 000143 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV---LVDPIPEVRSV 1638 (2058)
Q Consensus 1562 ~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~---l~d~~~~vR~~ 1638 (2058)
.....|.+..++++.++..++. +.|.|+...++..+... ..|.+...|..
T Consensus 532 --------------------------d~r~LrgktmEcisli~~AVGk-e~F~~~a~eliqll~~~~~~~~~~dd~~~sy 584 (1075)
T KOG2171|consen 532 --------------------------DLRELRGKTMECLSLIARAVGK-EKFLPLAEELIQLLLELQGSDQDDDDPLRSY 584 (1075)
T ss_pred --------------------------hhHHHHhhHHHHHHHHHHHhhh-hhhhHhHHHHHHHHHhhcccchhhccccHHH
Confidence 1125677778888888887765 67888998999988887 44556667999
Q ss_pred HHHHHHHHHHhhccc---CccchHHHHHhhcccCCC-----------------h------------------HHHhhHHH
Q 000143 1639 AARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNS-----------------N------------------VERSGAAQ 1680 (2058)
Q Consensus 1639 a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~-----------------~------------------~~R~~aa~ 1680 (2058)
.+.+++.+++.+|++ |++.+||.++.+.+.+++ + ..+..++.
T Consensus 585 ~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~ 664 (1075)
T KOG2171|consen 585 MIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACE 664 (1075)
T ss_pred HHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHH
Confidence 999999999999998 677888888876642110 0 12445677
Q ss_pred HHHHHHHHhchh---HHHHhhH-HHHHhhccCChhHHHHHHHHHHHhHHHhch-------hHHHhHHHHHHHHHHhccCC
Q 000143 1681 GLSEVLAALGTV---YFEHILP-DIIRNCSHQRASVRDGYLTLFKYLPRSLGV-------QFQNYLQQVLPAILDGLADE 1749 (2058)
Q Consensus 1681 ~L~~i~~~~g~~---~l~~llp-~Ll~~l~~~~~~vR~~al~~l~~la~~~g~-------~f~pyl~~ilp~Ll~~L~d~ 1749 (2058)
.|+.++...+.. |+++++. .+....-..+..||.+++.++..+..+... ...+....+.|.++..+.++
T Consensus 665 ~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E 744 (1075)
T KOG2171|consen 665 ALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEE 744 (1075)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcC
Confidence 788887776654 5555555 222222345789999999999887765422 23345566778888888765
Q ss_pred -CHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCC--c-ccccccCCCCC--CC
Q 000143 1750 -NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT--S-GKALLEGGSDD--EG 1823 (2058)
Q Consensus 1750 -~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~--~-~k~~~~~~~e~--~~ 1823 (2058)
+.+|-...++++...++.++...+.. ..++..-..+...++.+..+. . .+...+..+.+ +.
T Consensus 745 ~e~~vl~~vl~~f~~~i~~~G~~~L~~-------------~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~ 811 (1075)
T KOG2171|consen 745 PETEVLSEILESFAECIEVMGDNCLNE-------------DGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEED 811 (1075)
T ss_pred CcHHHHHHHHHHHHHHHHhcCcccCCc-------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 46777888888888888887553221 001111011111111111100 0 00000000000 00
Q ss_pred cc------hHHHHH---HHHHHhChh---hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHH
Q 000143 1824 AS------TEAHGR---AIIEVLGRD---KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI 1891 (2058)
Q Consensus 1824 ~~------~e~~~~---~l~~~Lg~~---~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~ 1891 (2058)
.. .+.+.+ .+...++.. +++.+++.+..........-|+.|+.++..++..++.....+.+.+++.++
T Consensus 812 ~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~ 891 (1075)
T KOG2171|consen 812 LDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVL 891 (1075)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 00 111111 223333433 344555555555444444449999999999999998888899999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhCcch---hhchHHHHhhhcCCCC------hhHHHHHHHHHHHHHHhhChhhhHhH
Q 000143 1892 SSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPS------ASRRQGVCIGLSEVMASAGKSQLLSF 1962 (2058)
Q Consensus 1892 ~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~---l~~llp~L~~~l~d~~------~~vR~~a~~aL~eii~~~~~~~l~~~ 1962 (2058)
..+.|.++++|+.|+..+|.++...|..+ ....+|.|...+..+. ...+.++|.+++.++...+.. .+
T Consensus 892 ~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~--i~- 968 (1075)
T KOG2171|consen 892 EALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNR--IP- 968 (1075)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCcc--Cc-
Confidence 99999999999999999999999988763 4566777777665433 234578999999999876543 34
Q ss_pred HhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH---HHhChh---hHHHHHHHHHHhc
Q 000143 1963 MDELIPTIRTALCDSILEVRESAGLAFSTLF---KSAGMQ---AIDEIVPTLLHAL 2012 (2058)
Q Consensus 1963 ~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~---~~~g~~---~~~~ilp~Ll~~L 2012 (2058)
+++++|.+...+- -.+=++.+...+.-++ +.-.+. +-++.+|.++..+
T Consensus 969 vdqvl~~~l~~LP--l~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~ 1022 (1075)
T KOG2171|consen 969 VDQVLPAWLSWLP--LKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVC 1022 (1075)
T ss_pred HHHHHHHHHHhCC--CccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHH
Confidence 6889999988772 1111333444444443 332221 2234566665554
|
|
| >PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=397.29 Aligned_cols=318 Identities=25% Similarity=0.344 Sum_probs=254.1
Q ss_pred HHHHHHHHHHHHhhhcCCchhhhhhhHHHHHHHHHhhhhhcCcHHHHHHHHHHHHHHHHhccCcccHHHHHHHHhhcchh
Q 000143 346 PYQRIGMVNALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEK 425 (2058)
Q Consensus 346 ~~~R~~~~~~l~~l~~~~~~~~~~~~s~~i~~~l~~~~~kE~~E~~l~~~l~al~~~~~~~~~~~~~~~~~~~~kg~~~K 425 (2058)
||||+.+++||..++. . .+|.+|+++++|++.||+||+++.++++||+.|+.+.+.++|++++++|+|||++|
T Consensus 1 ad~r~~~~~~L~~l~~-~------~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~k 73 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-S------SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDK 73 (339)
T ss_pred CcHHHHHHHHHHhCCC-c------chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCC
Confidence 6999999999977765 2 27999999999999999999999999999999999998899999999999999999
Q ss_pred HH-HHHHHHHHHHHHHh---hhhhhhhhhhhHHHHHHHHHHHhhccccc-----hhHHHHHHHHHHHhhhhhhHHHhhhH
Q 000143 426 EA-LRRGHLRCLRVICT---NTDAVLQVSSLLGPLIQLVKTGFTKAVQR-----LDGIYAFLIVGKIAAADIKAEETVTK 496 (2058)
Q Consensus 426 ~~-~r~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~a~~~l~~~~~~~~~~~~~~~~ 496 (2058)
++ +||+|+.+||.+|| |.+...++.+|+|.|++.++++.++|.+. +.|+|+++++... ...+.+. ..
T Consensus 74 k~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~--~~~~~~~--~~ 149 (339)
T PF12074_consen 74 KPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSW--KLDKIDS--KN 149 (339)
T ss_pred CCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccc--cchhhhh--hh
Confidence 87 99999999999999 55667888999999999999999999665 4455554441111 1112222 33
Q ss_pred HHHHHhhhcCCCCc-chhhhhhc-CChhHhHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHhcCC--ChHHHHHHHH
Q 000143 497 EKLWSLVSQNEPSL-VPTAMISK-LSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP--SWDIRKMAHD 572 (2058)
Q Consensus 497 ~~~~~~~~~~k~~f-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~~~~~--~~~vr~~a~~ 572 (2058)
...|.++.++||+| +++|+|+| .++||.+|+++++++++..+..+..++. ..+|+++|+|++||+ +|+||+.|.+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~ 228 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALS 228 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 47888888999997 67999999 6688889999999999988877665544 689999999999999 8999999999
Q ss_pred HHHHHHhhCcc-cHHHHHHHHHHHHhhhhhhhhccCCCCCCcccCCCCCCCCChHHHHHHHHhhhhhhccC-------Cc
Q 000143 573 ATRKIITSVPH-LSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALAR-------GP 644 (2058)
Q Consensus 573 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~ 644 (2058)
.+++++.++|+ ++..++.+||+|+.... ..++++. ...........+.+++ |........ .+
T Consensus 229 ~l~~l~~~~~~~l~~~li~~l~~~l~~~~-------~~~~~s~--~~~~~~~~~~~v~~ai-~~~~~~~~~~~~~~~~~~ 298 (339)
T PF12074_consen 229 ALKKLYASNPELLSKSLISGLWKWLSSSE-------TGDKESS--AENSSDKNLSPVLSAI-CLAPADLSISDGSSADLE 298 (339)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHhcc-------ccccccc--cccccccccccchHHH-HhhhHhhhccccchhHHH
Confidence 99999999999 69999999999998662 2232221 1111112233455555 333322111 26
Q ss_pred chhhhHhhhcCCCccccccccccchhHHHHhHHhhCCChHHHHhhcHH
Q 000143 645 SASARVIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVG 692 (2058)
Q Consensus 645 ~~~~~~l~~~hhp~i~~~~~~~~~W~~l~~~l~~~~~dp~~lv~~~~~ 692 (2058)
++++++|++||||+|+. +++|+++|++ +|+||++||++|.+
T Consensus 299 ~~~~~lLvla~hp~i~~----~~~Wi~L~~~---~~lDP~~lv~~~~~ 339 (339)
T PF12074_consen 299 SQLVSLLVLAHHPLIPR----KNLWIDLCQR---AGLDPGDLVSENAD 339 (339)
T ss_pred HHHHHHHHHhCcHhhcc----cchHHHHHHH---cCCCHHHHHHhcCC
Confidence 78999999999999984 4799999533 99999999999964
|
This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=354.39 Aligned_cols=662 Identities=17% Similarity=0.225 Sum_probs=466.4
Q ss_pred HHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHH-------------------H
Q 000143 1058 EVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA-------------------E 1118 (2058)
Q Consensus 1058 ~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a-------------------~ 1118 (2058)
++.++|..++|||..+|..|...|.+.. ..+|+.++..+.+++ +........|..| .
T Consensus 2 ~~~~~le~tlSpD~n~~~~Ae~~l~~~~---~~nf~~F~~~Ls~vl-~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~ 77 (859)
T KOG1241|consen 2 ELLELLEKTLSPDQNVRKRAEKQLEQAQ---SQNFPQFLVLLSEVL-ANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQ 77 (859)
T ss_pred cHHHHHHHHcCCCcchHHHHHHHHHHHH---hccHHHHHHHHHHHH-hccCCcHHHHHHHhHHHhhhhccCCHHHHHHHH
Confidence 3456677788888888888888887664 335555555555543 2222234444443 3
Q ss_pred HHHhhcCCCCCCCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCC-chHHHHHHHHHHHHhhcCCCCCCCCCCchhhH
Q 000143 1119 DIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPD-SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQ 1195 (2058)
Q Consensus 1119 ~~w~~~~~~~~~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~ 1195 (2058)
+.|-....+.++.+ ..++..|+++.+..+..|++++++++.. .|. .|++++..|..... . ..+..+|+
T Consensus 78 qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~----~-----~~~~~~k~ 148 (859)
T KOG1241|consen 78 QRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVG----E-----EQASMVKE 148 (859)
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcc----c-----ccchHHHH
Confidence 46887776666777 7788999999999999999999999753 453 67777777665422 1 12226899
Q ss_pred HHHHHHHHhhhhhCCCCh----HHHHHHHHHhh-ccCCCHHHHHHHHHHH---HHHHH-hhCcc-chhhHHHHHHHHhcc
Q 000143 1196 GIALALHSAADVLRTKDL----PVIMTFLISRA-LADTNADVRGRMLNAG---IMIID-KHGRD-NVSLLFPIFENYLNK 1265 (2058)
Q Consensus 1196 ~~~~al~~l~~~~~~~~~----~~l~~~Li~~~-L~d~~~~VR~~al~a~---~~~i~-~~g~~-~~~~Ll~~l~~~L~~ 1265 (2058)
++..++|+++..+.++.+ +.++..++... -..++..||-++++|+ .++.. .+..+ ..+.+|.+..+.-
T Consensus 149 ~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEat-- 226 (859)
T KOG1241|consen 149 SSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEAT-- 226 (859)
T ss_pred HHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecc--
Confidence 999999999999888754 45666666433 3467889999998885 44444 33333 4667887654431
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHh-HhccCCcchHH-HHHHHHhhhCCCCHHHHHHHHHhhHhhH--------------h
Q 000143 1266 KASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVHA-VVDKLLDVLNTPSEAVQRAVSSCLSPLM--------------Q 1329 (2058)
Q Consensus 1266 ~~~~~e~~~~vR~~av~~Lg~La~-~l~~~~p~i~~-iv~~Ll~~L~~~~~~V~~av~~~L~~l~--------------~ 1329 (2058)
...+. .++.+|+.||.++.. |+....||+.+ ++...+.++.+++++|...+.+--++.. .
T Consensus 227 --q~~d~--~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d 302 (859)
T KOG1241|consen 227 --QSPDE--EIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVD 302 (859)
T ss_pred --cCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11223 799999999999985 55555677776 8888899999998888654443211111 0
Q ss_pred h--------c-ccchHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHH
Q 000143 1330 S--------M-QDEAPTLVSRLLDQLMKS------DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAK 1394 (2058)
Q Consensus 1330 ~--------~-~~~~~~~v~~Ll~~L~~~------~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~ 1394 (2058)
. + ....+..+|.+++.|.++ |+|..-++|..||..+++..|++.++ +++||+.+.++++ ||+
T Consensus 303 ~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~--~Vl~Fiee~i~~p-dwr 379 (859)
T KOG1241|consen 303 QGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP--HVLPFIEENIQNP-DWR 379 (859)
T ss_pred cCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh--hhHHHHHHhcCCc-chh
Confidence 0 0 122457889999998863 47999999999999999999999986 8999999999998 999
Q ss_pred HHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-----HhHHHHHHHhcc
Q 000143 1395 RREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLE 1468 (2058)
Q Consensus 1395 ~R~~al~al~~L~~~lg-~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-----~~llp~Ll~~L~ 1468 (2058)
.|++|.++||++.++.. ..+.|++.+.+|.++..+.|+.-.||+++.++++++++.++.... ..+++.+++++.
T Consensus 380 ~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 380 NREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN 459 (859)
T ss_pred hhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh
Confidence 99999999999999876 467899999999999999999999999999999999987764332 233333444443
Q ss_pred CCChHHHHHHHHHHHHHHhhChhh---------HhhhhhhHHHHHHHHhc--C-CCHHHHHHHHHHHHHHHhhcCchhH-
Q 000143 1469 DKAWRTKQSSVQLLGAMAYCAPQQ---------LSQCLPKIVPKLTEVLT--D-THPKVQSAGQTALQQVGSVIKNPEI- 1535 (2058)
Q Consensus 1469 ~~~~~~R~~a~~~Lg~la~~~p~~---------l~~~L~~Iip~L~~~L~--D-~~~~VR~aA~~aL~~l~~~~~~~~i- 1535 (2058)
| .+|+-..+|.++..+++++++. ..++++.|+..|++.-+ | .....|.+|.++|+.+.+...+...
T Consensus 460 D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~ 538 (859)
T KOG1241|consen 460 D-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYP 538 (859)
T ss_pred h-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHH
Confidence 3 3555556666666666555442 12345555555555443 2 3355666666666666665543322
Q ss_pred --HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000143 1536 --ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2058)
Q Consensus 1536 --~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l 1613 (2058)
..+.+.++..+. +++. .+ -..+.+. +.-.++...-|..++.+.+.++. ++
T Consensus 539 ~v~~~~l~il~kl~-------q~i~--~~--~l~~~dr---------------~q~~eLQs~Lc~~Lq~i~rk~~~--~~ 590 (859)
T KOG1241|consen 539 MVQKLTLVILEKLD-------QTIS--SQ--ILSLADR---------------AQLNELQSLLCNTLQSIIRKVGS--DI 590 (859)
T ss_pred HHHHHHHHHHHHHH-------HHHH--HH--hccHhhH---------------HHHHHHHHHHHHHHHHHHHHccc--cc
Confidence 222222222111 1111 00 0000000 00123445556666666655443 78
Q ss_pred hhhHhhhhHHHHHhhCC-CCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHh
Q 000143 1614 IPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2058)
Q Consensus 1614 ~pyl~~ll~~L~~~l~d-~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~ 1689 (2058)
.++.+.+|..+.+.++. .+..+.+.|.-+++.++..+|.. |++.+.|+|...|++..+..+-..+..-.|++++.+
T Consensus 591 ~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL 670 (859)
T KOG1241|consen 591 REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARAL 670 (859)
T ss_pred hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999987 45568899999999999999986 889999999999987776655555666669999999
Q ss_pred chh---HHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc---cCC--------CHHH
Q 000143 1690 GTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL---ADE--------NESV 1753 (2058)
Q Consensus 1690 g~~---~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L---~d~--------~~~V 1753 (2058)
+.+ +.+.+|..+.+.++++ +..||..++++||+|+.++|.+|.+|++.++|.+.++- .|+ ..++
T Consensus 671 ~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~L 750 (859)
T KOG1241|consen 671 EDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDEL 750 (859)
T ss_pred HhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHH
Confidence 987 6789999999999987 78999999999999999999999999999999998764 122 1358
Q ss_pred HHHHHHHHHHHHHHhcc
Q 000143 1754 RDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1754 R~~a~~al~~lv~~~~~ 1770 (2058)
|++++++...++..++.
T Consensus 751 Re~~leay~gi~qglk~ 767 (859)
T KOG1241|consen 751 REGILEAYTGIIQGLKT 767 (859)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 89999999888877763
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-35 Score=345.83 Aligned_cols=719 Identities=17% Similarity=0.245 Sum_probs=504.5
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCC
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKD 1212 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~ 1212 (2058)
..+++.-.+++..+|+++-..+-..-. +|+.-..++--|.+. + +..-..|.++.+.|++-...-.+..
T Consensus 16 ~~lLk~s~Spn~~~~~~~~~~leq~~~-~pdfnnYL~~IL~~~-----~------~~d~~~Rs~aGLlLKNnvr~~~~~~ 83 (885)
T KOG2023|consen 16 AQLLKNSQSPNSETRNNVQEKLEQFNL-FPDFNNYLIYILIRA-----K------SEDVPTRSLAGLLLKNNVRGHYNSI 83 (885)
T ss_pred HHHHHhccCCChHHHHHHHHHHHHHhc-ccchhceeeEEEecc-----c------ccchhHHHHhhhhHhccccccccCC
Confidence 445555668899999999887766543 565322222222211 1 2334579999999997654322222
Q ss_pred hHHHHHHHH---HhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHh
Q 000143 1213 LPVIMTFLI---SRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 1289 (2058)
Q Consensus 1213 ~~~l~~~Li---~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~ 1289 (2058)
-+....++- -++++|.++.+|.........++..+|..+|++++|.+.++|..++. ...+.|+.+|.++++
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~------n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDY------NTCEGAFGALQKICE 157 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcc------cccchhHHHHHHHHh
Confidence 223333331 26899999999987776677777888888999999999999987432 456889999999996
Q ss_pred H----hccC--CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch----HHHHHHHHHHHhcCCCHHHHHHHH
Q 000143 1290 H----LAKD--DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERRGAA 1359 (2058)
Q Consensus 1290 ~----l~~~--~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~----~~~v~~Ll~~L~~~~~~~vR~~Aa 1359 (2058)
. ++.+ ...+..++|++++.++++++.+|..+..|+..++......+ ..++..++. +.+++++.+|+..+
T Consensus 158 Dsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFa-lanD~~~eVRk~vC 236 (885)
T KOG2023|consen 158 DSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFA-LANDEDPEVRKNVC 236 (885)
T ss_pred hhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHH-HccCCCHHHHHHHH
Confidence 3 3322 23478899999999999999999999999988876544333 344445554 33677899999999
Q ss_pred HHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--cccchhhHHHHHHHHHHHcC------
Q 000143 1360 FGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKL--GRLFEPYVIQMLPLLLVAFS------ 1430 (2058)
Q Consensus 1360 ~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~l--g~~~~p~l~~llp~Ll~~l~------ 1430 (2058)
.++.-+......+.++ -..|++++.+..++. |..+--.|+..+-.+++.. ...+.||+.+++|.++..+.
T Consensus 237 ~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~ 315 (885)
T KOG2023|consen 237 RALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI 315 (885)
T ss_pred HHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH
Confidence 9999998866544443 126888888888877 5667777777788888753 35688999999999887542
Q ss_pred -----CC---------------------------------------------CHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 000143 1431 -----DQ---------------------------------------------VVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2058)
Q Consensus 1431 -----D~---------------------------------------------~~~VR~aA~~al~~l~~~l~~~~v~~ll 1460 (2058)
++ +...|++.+.+++.++..++.+.++.++
T Consensus 316 ~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~ 395 (885)
T KOG2023|consen 316 ILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILL 395 (885)
T ss_pred HHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHH
Confidence 00 1468999999999999999988889999
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHH
Q 000143 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2058)
Q Consensus 1461 p~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp 1540 (2058)
|.+-+.|.+++|.+|.+++.++|+++++|-+.+-+|||.++|.++.+|+|..+-||.-+||+|++++.++-..
T Consensus 396 PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~------- 468 (885)
T KOG2023|consen 396 PLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD------- 468 (885)
T ss_pred HHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875321
Q ss_pred HHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhh
Q 000143 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620 (2058)
Q Consensus 1541 ~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~l 1620 (2058)
+.. ..+..++.-+.+.+-|.+..|+..||.++..+-+- ....+.||+..+
T Consensus 469 --------~~~--------------------~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~--A~~eLVp~l~~I 518 (885)
T KOG2023|consen 469 --------SRD--------------------EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE--AGEELVPYLEYI 518 (885)
T ss_pred --------ChH--------------------hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh--ccchhHHHHHHH
Confidence 100 01111223333444566667788888887777663 345788999888
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHH
Q 000143 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695 (2058)
Q Consensus 1621 l~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~ 1695 (2058)
+..+..++.--..+--.....|+|.++..+|.. |..-+||.|++....
T Consensus 519 L~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~--------------------------- 571 (885)
T KOG2023|consen 519 LDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWEL--------------------------- 571 (885)
T ss_pred HHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHh---------------------------
Confidence 888887765322111224567888888887754 455566666554431
Q ss_pred HhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhc
Q 000143 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775 (2058)
Q Consensus 1696 ~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~ 1775 (2058)
+.|.+..+ --.+.|+..++.++|..|.||.+.+....+..+.+ ++..+.....+....
T Consensus 572 ---------lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~-----------t~q~~~~~~~~~~~~- 629 (885)
T KOG2023|consen 572 ---------LSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQK-----------TLQLLAKVQQDPTVE- 629 (885)
T ss_pred ---------cCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHH-----------HHHHHHhccCCcccc-
Confidence 11111111 12457888899999999999976655444433221 011111110000000
Q ss_pred hHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcC
Q 000143 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855 (2058)
Q Consensus 1776 llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D 1855 (2058)
.| |.| +
T Consensus 630 -~p-----------------------------------------dkd-f------------------------------- 635 (885)
T KOG2023|consen 630 -AP-----------------------------------------DKD-F------------------------------- 635 (885)
T ss_pred -CC-----------------------------------------Ccc-e-------------------------------
Confidence 00 000 0
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcch---hhchHHHHhh
Q 000143 1856 VSLSVRQAALHVWKTIVANTPKTLKEIM--PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSR 1930 (2058)
Q Consensus 1856 ~~~~VR~aA~~~l~~lv~~~~~~l~~~l--~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~---l~~llp~L~~ 1930 (2058)
. -.+++.+..++.+.+..+.+.+ ..++..+..++.|+.+++|+.+...+|++++.+.+.+ ...++|.+..
T Consensus 636 ---i--I~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~ 710 (885)
T KOG2023|consen 636 ---I--IVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGA 710 (885)
T ss_pred ---E--EEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhh
Confidence 0 0112222222323333322222 1367778889999999999999999999999987665 4578888876
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhC---hhhHHHHH
Q 000143 1931 GLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTLFKSAG---MQAIDEIV 2005 (2058)
Q Consensus 1931 ~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~--D~d~~VR~~Aa~a~~~l~~~~g---~~~~~~il 2005 (2058)
-++.+...+-.+||+++||+...++.+ ..+|+..++..|...++ ..+..+-++.+-++|++....+ .++++.++
T Consensus 711 Nl~~~~isv~nNA~WAiGeia~k~g~~-~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~~f~ 789 (885)
T KOG2023|consen 711 NLNPENISVCNNAIWAIGEIALKMGLK-MKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLDSFM 789 (885)
T ss_pred cCChhhchHHHHHHHHHHHHHHHhchh-hhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHHHHH
Confidence 666666778899999999999999875 46888888877777765 4467899999999999986554 36889999
Q ss_pred HHHHHhcC---CCcchHHHHHHHHHHHhhcCCccc
Q 000143 2006 PTLLHALE---DDQTSDTALDGLKQILSVRTTAVL 2037 (2058)
Q Consensus 2006 p~Ll~~L~---~~~~~~~al~aL~~i~~~~~~~~l 2037 (2058)
.++...|. |.+++++|++|+++++..+|..+.
T Consensus 790 ~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv 824 (885)
T KOG2023|consen 790 RPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVV 824 (885)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHheeeCchhhh
Confidence 99888765 456799999999999998876543
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-31 Score=310.79 Aligned_cols=683 Identities=18% Similarity=0.212 Sum_probs=490.8
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHHHHhhc--C--CCCC---
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRY--G--YDFG--- 1129 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~--~--~~~~--- 1129 (2058)
.++.++|+..+||++++|..+.+.+.+.. .+|.+..|+.-+.+-....++..|.+|.-+...+ + ...+
T Consensus 13 ~ql~~lLk~s~Spn~~~~~~~~~~leq~~-----~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~ 87 (885)
T KOG2023|consen 13 QQLAQLLKNSQSPNSETRNNVQEKLEQFN-----LFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEV 87 (885)
T ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHh-----cccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHH
Confidence 36778999999999999999999998875 2344456666666666667788898887765542 1 1111
Q ss_pred CCH--HhHHHHhcCCCHHHHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhh
Q 000143 1130 TDY--SGLFKALSHSNYNVRLAAAEALATALDEYP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2058)
Q Consensus 1130 ~~~--~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~ 1206 (2058)
.+| ..+++.+.+.++.+|.+..-.+.+++..+. ..|+++++.|.+.+. +.......++.-||..+++
T Consensus 88 ~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~----------s~d~n~~EgA~~AL~KIcE 157 (885)
T KOG2023|consen 88 LDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELLD----------SPDYNTCEGAFGALQKICE 157 (885)
T ss_pred HHHHHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHhc----------CCcccccchhHHHHHHHHh
Confidence 223 778999999999999999999998886543 467888888887753 1234567888999998875
Q ss_pred ----hhCCCC----hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHH
Q 000143 1207 ----VLRTKD----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVRE 1278 (2058)
Q Consensus 1207 ----~~~~~~----~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~ 1278 (2058)
.++.+- ++.+++-++ +...++++.+|..++.|...+|-.........+=.+++.+..- +.+++. .||.
T Consensus 158 Dsa~~lds~~~~rpl~~mipkfl-~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFal-anD~~~--eVRk 233 (885)
T KOG2023|consen 158 DSAQFLDSDVLTRPLNIMIPKFL-QFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFAL-ANDEDP--EVRK 233 (885)
T ss_pred hhHHHHhhhcccCchHHhHHHHH-HHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHH-ccCCCH--HHHH
Confidence 233321 222333222 4567899999999999988877554433222222333333332 434333 8999
Q ss_pred HHHHHHHHHHh-HhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc------ccchHHHHHHHHHHHh----
Q 000143 1279 GVVIFTGALAK-HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM------QDEAPTLVSRLLDQLM---- 1347 (2058)
Q Consensus 1279 ~av~~Lg~La~-~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~------~~~~~~~v~~Ll~~L~---- 1347 (2058)
.++.++..+-+ +.++..|++..+++.++..-+|.++.|...+++....+...- .+....++|.+++.+.
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~ 313 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDD 313 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccc
Confidence 99999999886 456667999999999999999999999887777554444321 2223444454443321
Q ss_pred -----c------------------------------------CC----------CHHHHHHHHHHHHHHHhhhCccccch
Q 000143 1348 -----K------------------------------------SD----------KYGERRGAAFGLAGVVKGFGISSLKK 1376 (2058)
Q Consensus 1348 -----~------------------------------------~~----------~~~vR~~Aa~~L~~l~~~~g~~~l~~ 1376 (2058)
+ ++ +|+.|+-++.+|+.+++-+|.+.++
T Consensus 314 D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~- 392 (885)
T KOG2023|consen 314 DIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLP- 392 (885)
T ss_pred cHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHH-
Confidence 1 00 2889999999999999999887775
Q ss_pred hchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---
Q 000143 1377 YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--- 1453 (2058)
Q Consensus 1377 ~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~--- 1453 (2058)
.++|.|.+.+.++ +|.+||+++.|+|.|++++-..|-||++.++|.++.++.|..+-||..+++++.+.+.....
T Consensus 393 -~l~PlLk~~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~ 470 (885)
T KOG2023|consen 393 -ILLPLLKEHLSSE-EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSR 470 (885)
T ss_pred -HHHHHHHHHcCcc-hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCCh
Confidence 7899999999886 99999999999999999999999999999999999999999999999999999998765443
Q ss_pred -hhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhh
Q 000143 1454 -QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1454 -~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~---D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
+.++.++..++..+-|.+-+++.+||.++..+-+.+..++-+|+..|+..+...+. ..+-.+-. .|++.+++.
T Consensus 471 ~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILY---DAIgtlAds 547 (885)
T KOG2023|consen 471 DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILY---DAIGTLADS 547 (885)
T ss_pred HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHH---HHHHHHHHH
Confidence 23467777788888899999999999999999999999999999999999887764 33333434 445555554
Q ss_pred c----Cch-hHHhHHHHHHh---ccCCCChhHH---HHHHHHHh---ccccccCChhhHhhHHHHHHHhh-------cC-
Q 000143 1530 I----KNP-EIASLVPTLLM---GLTDPNDHTK---YSLDILLQ---TTFVNTVDAPSLALLVPIVHRGL-------RE- 1587 (2058)
Q Consensus 1530 ~----~~~-~i~~lvp~Ll~---~l~d~~~~vr---~al~~L~~---~~f~~~~~~~~l~~llp~L~~~L-------~d- 1587 (2058)
+ .+| |++-++|.|++ .+.|.++..- +|+.++.. ..|.++.. |.....+.++.+.+ .+
T Consensus 548 vg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~-~Vy~Rc~~il~~t~q~~~~~~~~~ 626 (885)
T KOG2023|consen 548 VGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQ-PVYQRCFRILQKTLQLLAKVQQDP 626 (885)
T ss_pred HHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCH-HHHHHHHHHHHHHHHHHHhccCCc
Confidence 4 344 68889999876 4667766552 56665543 46777654 22333333333221 11
Q ss_pred ----CCHHHHHHHHHHHHHHHhhhCCCCchhhhH--hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---Cccch
Q 000143 1588 ----RSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDL 1658 (2058)
Q Consensus 1588 ----~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl--~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~l 1658 (2058)
++.+.-..+...+..+++.++.. +.+.+ ..++..+...+.|+.|+||..+..-+|.+++.+.+. +..++
T Consensus 627 ~~~~pdkdfiI~sLDL~SGLaegLg~~--ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~f 704 (885)
T KOG2023|consen 627 TVEAPDKDFIIVSLDLLSGLAEGLGSH--IEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADF 704 (885)
T ss_pred cccCCCcceEEEeHHHHhHHHHHhhhc--hHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 11122233555666666655432 22222 347888999999999999999999999999988655 45678
Q ss_pred HHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHH
Q 000143 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQN 1733 (2058)
Q Consensus 1659 lp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~p 1733 (2058)
+|.+...+..+.-+ +-..|.+++|+++..+|.+ ++..++..+...++.+ ...+-+...-.+|.++...++.++|
T Consensus 705 l~~lg~Nl~~~~is-v~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp 783 (885)
T KOG2023|consen 705 LPILGANLNPENIS-VCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAP 783 (885)
T ss_pred HHHHhhcCChhhch-HHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcch
Confidence 88887776644433 5667999999999999986 4566666666655544 5567777778889999999999999
Q ss_pred hHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHh
Q 000143 1734 YLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHY 1768 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~-~~~VR~~a~~al~~lv~~~ 1768 (2058)
+++.++.+-...++.- +.+-++.|.+.+..++..-
T Consensus 784 ~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vN 819 (885)
T KOG2023|consen 784 HLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVN 819 (885)
T ss_pred hHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeC
Confidence 9999998887766532 2234678888887776543
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-25 Score=276.23 Aligned_cols=887 Identities=18% Similarity=0.194 Sum_probs=599.2
Q ss_pred HHHH-HHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHHHHhhcCCCCCCCH-Hh
Q 000143 1057 NEVA-SALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SG 1134 (2058)
Q Consensus 1057 ~~l~-~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~~~~~~~~~-~~ 1134 (2058)
++.. .|++...++|.+.|.+|...|...... + + +. .+.+..... ..
T Consensus 4 ~~~~i~LlekmtssDKDfRfMAtsDLm~eLqk-------d---s----i~------------------Ld~dSe~kvv~~ 51 (1233)
T KOG1824|consen 4 MQVGINLLEKMTSSDKDFRFMATSDLMTELQK-------D---S----IK------------------LDDDSERKVVKM 51 (1233)
T ss_pred hHHHHHHHHHccCCCcchhhhhHHHHHHHHHh-------h---h----hh------------------ccccchhHHHHH
Confidence 4445 889999999999999999999876511 0 0 01 111111234 77
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCC-
Q 000143 1135 LFKALSHSNYNVRLAAAEALATALDEYPD-SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKD- 1212 (2058)
Q Consensus 1135 ll~~l~~~~~~vR~aaa~aLa~~~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~- 1212 (2058)
+++.|+|.++.|++-|.+++|.++...++ .+..+...|...... ..-+.|.....+++.....+.+..
T Consensus 52 lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s----------~keq~rdissi~Lktvi~nl~P~~~ 121 (1233)
T KOG1824|consen 52 LLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLS----------GKEQLRDISSIGLKTVIANLPPSSS 121 (1233)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhcc----------chhhhccHHHHHHHHHHhcCCCccc
Confidence 88999999999999999999999977665 566666666654321 122466666777776544443311
Q ss_pred ---hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHh
Q 000143 1213 ---LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK 1289 (2058)
Q Consensus 1213 ---~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~ 1289 (2058)
.+.++ ..+.|.|...+.. . +..+.++-.++..++.+-.
T Consensus 122 ~~la~tV~-----------------------------------~~~t~~l~~~i~~---q-e~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 122 SFLAATVC-----------------------------------KRITPKLKQAISK---Q-EDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred cccccHHH-----------------------------------HHHHHHHHHHhhh---c-ccchhhHHHHHHHHHHHHH
Confidence 11111 2223333333221 0 1112355445555555444
Q ss_pred HhccCCcch-HHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc-chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1290 HLAKDDPKV-HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVK 1367 (2058)
Q Consensus 1290 ~l~~~~p~i-~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~-~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~ 1367 (2058)
.+..-.|.+ ..+..-++..+..+-..||+.++.|++.+....+. ...+++..++..|.+......-+...++|+.+..
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r 242 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICR 242 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 444333333 34566677788888899999999999999877644 3577888899888887777777788999999998
Q ss_pred hhCccccc-hhchHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC-CC-----------
Q 000143 1368 GFGISSLK-KYGIAATLREGLA--DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQ----------- 1432 (2058)
Q Consensus 1368 ~~g~~~l~-~~~il~~L~~~l~--~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~-D~----------- 1432 (2058)
..|-..-. -..++|.+.++.+ +.++.+.|+.++.+++.+...+++.+.||++.++..+++.+. |+
T Consensus 243 ~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed 322 (1233)
T KOG1824|consen 243 QAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDED 322 (1233)
T ss_pred HhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchh
Confidence 77643321 1267888888772 233678999999999999999999999999999999888653 10
Q ss_pred ----------------------CHHHHHHHHHHHHHHHHhhhhh---hHHhHHHHHHHhccCCChHHHHHHHHHHHHHHh
Q 000143 1433 ----------------------VVAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY 1487 (2058)
Q Consensus 1433 ----------------------~~~VR~aA~~al~~l~~~l~~~---~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~ 1487 (2058)
++.||++|+.|+..++..-... ....+-|.++.++.+.+..+|.....+.-.+..
T Consensus 323 ~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~ 402 (1233)
T KOG1824|consen 323 AMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLK 402 (1233)
T ss_pred hhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1479999999999987654432 226677888899988888888877776666654
Q ss_pred hCh---------------------hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHHH
Q 000143 1488 CAP---------------------QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLL 1543 (2058)
Q Consensus 1488 ~~p---------------------~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll 1543 (2058)
..+ ..++...+.|+..+-+.+++.....|..+..-|..+....++ +++..++|.+.
T Consensus 403 qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~ 482 (1233)
T KOG1824|consen 403 QTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGII 482 (1233)
T ss_pred cCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhh
Confidence 321 124445566777777777766666777788888888777664 57789999999
Q ss_pred hccCCCChhHH---HHHHHHHh--ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC--C---Cch
Q 000143 1544 MGLTDPNDHTK---YSLDILLQ--TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--P---KDM 1613 (2058)
Q Consensus 1544 ~~l~d~~~~vr---~al~~L~~--~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~--~---~~l 1613 (2058)
..+.|.+.... .++..+.. +...+..-.|.+..+.|.+.....|+-+.+-.+|..+.+.+++.+.. + -+.
T Consensus 483 ~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~ 562 (1233)
T KOG1824|consen 483 YSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDA 562 (1233)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCC
Confidence 99998764322 33333322 22333344567778889999999999999999998888888887643 1 456
Q ss_pred hhhHhhhhHHHHHhhC--CCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHH
Q 000143 1614 IPYIGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2058)
Q Consensus 1614 ~pyl~~ll~~L~~~l~--d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~ 1688 (2058)
.||...++....+.+. |.+.+||+.|+.|+|.+...+|+. .++.++|.+++.|+++. .|..++.++..++..
T Consensus 563 ~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi---TRl~AvkAlt~Ia~S 639 (1233)
T KOG1824|consen 563 SPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI---TRLTAVKALTLIAMS 639 (1233)
T ss_pred ChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh---HHHHHHHHHHHHHhc
Confidence 7888888887777654 788999999999999999999964 57889999999998643 799999999888754
Q ss_pred hc----hhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH-HHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 000143 1689 LG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALGAGHV 1763 (2058)
Q Consensus 1689 ~g----~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl-~~ilp~Ll~~L~d~~~~VR~~a~~al~~ 1763 (2058)
.- ...+.++++.+...++......|.+.+.++..+..+.+..+.+++ +.++..+...+.+.+-.+.+.+...+..
T Consensus 640 ~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~t 719 (1233)
T KOG1824|consen 640 PLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTT 719 (1233)
T ss_pred cceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 21 124578888888888888889999999999999998887776654 4566666667777776777777777777
Q ss_pred HHHHhccc---chhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHh--hCCccccc------ccCCCCC--CCcchHHHH
Q 000143 1764 LVEHYATT---SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV--AGTSGKAL------LEGGSDD--EGASTEAHG 1830 (2058)
Q Consensus 1764 lv~~~~~~---~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~--~g~~~k~~------~~~~~e~--~~~~~e~~~ 1830 (2058)
+...+... ....+++.+...+.++- +...+...+-.+.... ++..+... +.....+ .+....++.
T Consensus 720 l~~~~ps~l~~~~~~iL~~ii~ll~Spl--lqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~ 797 (1233)
T KOG1824|consen 720 LAIIQPSSLLKISNPILDEIIRLLRSPL--LQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAY 797 (1233)
T ss_pred HHhcccHHHHHHhhhhHHHHHHHhhCcc--ccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHH
Confidence 66554432 22346777766665432 1122222222221111 11111000 0000000 000122221
Q ss_pred H-------HHHHHhChhhHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHH
Q 000143 1831 R-------AIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSER 1901 (2058)
Q Consensus 1831 ~-------~l~~~Lg~~~~~~vL~~L~~~~--~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~ 1901 (2058)
- ++....++... .+...+.... ...+..+|-.|+-.++.+..+.+..- -+.+...++++++++++++
T Consensus 798 ~siA~cvA~Lt~~~~~~s~-s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~---~~e~~~~iieaf~sp~edv 873 (1233)
T KOG1824|consen 798 YSIAKCVAALTCACPQKSK-SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP---QNELKDTIIEAFNSPSEDV 873 (1233)
T ss_pred HHHHHHHHHHHHhccccch-hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc---chhhHHHHHHHcCCChHHH
Confidence 1 12222232211 1222222222 23334566667777777665443222 2233446778899999999
Q ss_pred HHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHH
Q 000143 1902 RQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981 (2058)
Q Consensus 1902 R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~V 1981 (2058)
+.+|+.+||.+... .++.++|.+...+.+ .|..+.-...+|.+++...+.+.+.+|.+.++..|.+........+
T Consensus 874 ksAAs~ALGsl~vg----nl~~yLpfil~qi~s-qpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegt 948 (1233)
T KOG1824|consen 874 KSAASYALGSLAVG----NLPKYLPFILEQIES-QPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGT 948 (1233)
T ss_pred HHHHHHHhhhhhcC----chHhHHHHHHHHHhc-chHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhh
Confidence 99999999998642 456777777666543 3444556677999999998888889999999999999998888999
Q ss_pred HHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhcCCccchhhhh
Q 000143 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ--TSDTALDGLKQILSVRTTAVLPHILP 2042 (2058)
Q Consensus 1982 R~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~~--~~~~al~aL~~i~~~~~~~~lp~lip 2042 (2058)
|...++|+|.++-.- -+..+|.|-..+.++. .|-.++++++..+..+++.+-|.+-+
T Consensus 949 R~vvAECLGkL~l~e----pesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~ 1007 (1233)
T KOG1824|consen 949 RNVVAECLGKLVLIE----PESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQ 1007 (1233)
T ss_pred HHHHHHHhhhHHhCC----hHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHH
Confidence 999999999998532 3578999999888754 57788999988888877777666544
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-26 Score=269.18 Aligned_cols=708 Identities=16% Similarity=0.204 Sum_probs=480.4
Q ss_pred CCCCcHHHHHHHHHHHHccccchHHHHHHHHHHHHhcCCh-HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCC
Q 000143 1017 LLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQP-NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLP 1093 (2058)
Q Consensus 1017 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ll~~l~~~--~~~vR~~al~~L~~~~~~~~~~~~ 1093 (2058)
++......+++.|+.+.++.|.+++.+.+.|.+.++...+ +-+.++|-=+.++ +.+-|+-....|+.+.-... ++
T Consensus 357 ~~e~kEr~i~~llLkvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeDqerhllVkvidriLyklD-dl- 434 (1172)
T KOG0213|consen 357 DEEGKERKIMRLLLKVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLD-DL- 434 (1172)
T ss_pred cccccHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhc-cc-
Confidence 4566778999999999999999999999999999999866 5667777777776 56667777666665541110 11
Q ss_pred chhhhhhHhhh----hcCCCchHHHHHHHHHHhh----cCCCCCCCHHhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCch
Q 000143 1094 ENIEVSTSLWI----AVHDPEKSVAEAAEDIWDR----YGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSI 1165 (2058)
Q Consensus 1094 ~~~~~~~~~~~----a~~d~~~~~r~~a~~~w~~----~~~~~~~~~~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~ 1165 (2058)
...|..+|.. ...|+|.-.|-...++..+ .|+. ..+..+-+++++.+..||+..+++++..+.... +
T Consensus 435 -vrpYVhkILvViepllided~yar~egreIisnLakaaGla--~mistmrpDidn~deYVRnttarafavvasalg--i 509 (1172)
T KOG0213|consen 435 -VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLA--TMISTMRPDIDNKDEYVRNTTARAFAVVASALG--I 509 (1172)
T ss_pred -chhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhH--HHHHhhcCCcccccHHHHHHHHHHHHHHHHHhC--c
Confidence 0112222211 1234444444444444332 2322 122556678899999999999999999986542 2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCChHH---HHHHHHHhhccCCCHHHHHHHHHHHHH
Q 000143 1166 QGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPV---IMTFLISRALADTNADVRGRMLNAGIM 1242 (2058)
Q Consensus 1166 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~~~~---l~~~Li~~~L~d~~~~VR~~al~a~~~ 1242 (2058)
+.++..|-..+. +..+|+.|+++..+...++..++...+++ ++..+ .+++.|....||.....+...
T Consensus 510 p~llpfLkavc~---------SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii-~~gl~De~qkVR~itAlalsa 579 (1172)
T KOG0213|consen 510 PALLPFLKAVCG---------SKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKII-EHGLKDEQQKVRTITALALSA 579 (1172)
T ss_pred HHHHHHHHHHhc---------cccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHH-HHhhcccchhhhhHHHHHHHH
Confidence 334444433322 13589999999999999999888776665 34433 689999999999887776666
Q ss_pred HHHhh---CccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccC--CcchHHHHHHHHhhhCCCCHHHH
Q 000143 1243 IIDKH---GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSEAVQ 1317 (2058)
Q Consensus 1243 ~i~~~---g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~--~p~i~~iv~~Ll~~L~~~~~~V~ 1317 (2058)
+.+.. |.+.++.++..+++-+.+. .+. .-.+-+.++|.++..++.. .-+..+++-.++..+..|+++..
T Consensus 580 laeaa~Pygie~fDsVlkpLwkgir~h-rgk-----~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemk 653 (1172)
T KOG0213|consen 580 LAEAATPYGIEQFDSVLKPLWKGIRQH-RGK-----ELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMK 653 (1172)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHc-cCh-----HHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHH
Confidence 55544 4456777777777765541 111 1122244555554322221 12455677778888888888877
Q ss_pred HHHHHhhHhhHhhcccch----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCH
Q 000143 1318 RAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSA 1393 (2058)
Q Consensus 1318 ~av~~~L~~l~~~~~~~~----~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~ 1393 (2058)
+.+.+.+.......+-+- .+.++.+|... |. |+.|. | -.
T Consensus 654 kivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~f-----w~-rrmA~-----------------------------d--rr 696 (1172)
T KOG0213|consen 654 KIVLKVVKQCCATDGVEPAYIRFDILPEFFFSF-----WG-RRMAL-----------------------------D--RR 696 (1172)
T ss_pred HHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhh-----hh-hhhhc-----------------------------c--cc
Confidence 655544333322211110 12222222211 11 11111 0 00
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-----HhHHHHHHHhcc
Q 000143 1394 KRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLE 1468 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-----~~llp~Ll~~L~ 1468 (2058)
..|+ .+..-..||...|. . .++.-++..+.|+.+..|....++...++..++..++ .+++..++..++
T Consensus 697 ~ykq-lv~ttv~ia~KvG~--~----~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afq 769 (1172)
T KOG0213|consen 697 NYKQ-LVDTTVEIAAKVGS--D----PIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQ 769 (1172)
T ss_pred chhh-HHHHHHHHHHHhCc--h----HHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHH
Confidence 0111 12233456666663 2 3455566778899999999999999999998887554 566777777777
Q ss_pred CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch----hHHhHHHHHHh
Q 000143 1469 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLM 1544 (2058)
Q Consensus 1469 ~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~lvp~Ll~ 1544 (2058)
++.-... .-+..+|.+.........+|+++|+..++..|+++.+.||+.|+..++.++.++... .+..+--.|.+
T Consensus 770 eqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyE 848 (1172)
T KOG0213|consen 770 EQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYE 848 (1172)
T ss_pred hcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHH
Confidence 6543332 335667777777777889999999999999999999999999999999999988753 34555566777
Q ss_pred ccCCCChhHH----HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhh
Q 000143 1545 GLTDPNDHTK----YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620 (2058)
Q Consensus 1545 ~l~d~~~~vr----~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~l 1620 (2058)
.+....+.+= .|+.++...-=.... .|....++|.|...|+++...+.......+|.+|..-.+.-....|+ .+
T Consensus 849 ylgeeypEvLgsILgAikaI~nvigm~km-~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM-RI 926 (1172)
T KOG0213|consen 849 YLGEEYPEVLGSILGAIKAIVNVIGMTKM-TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM-RI 926 (1172)
T ss_pred hcCcccHHHHHHHHHHHHHHHHhcccccc-CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH-HH
Confidence 7776665542 244443321101112 24456789999999999999999999999999998522211223343 35
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHH
Q 000143 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPD 1700 (2058)
Q Consensus 1621 l~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~ 1700 (2058)
.-.|+.+|...+.++|..|...||.+++.+|++ +++..|++.|+.++.. .|.++..+++-+++.+|+- .++|.
T Consensus 927 cfeLlelLkahkK~iRRaa~nTfG~IakaIGPq---dVLatLlnnLkvqeRq-~RvcTtvaIaIVaE~c~pF---tVLPa 999 (1172)
T KOG0213|consen 927 CFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ---DVLATLLNNLKVQERQ-NRVCTTVAIAIVAETCGPF---TVLPA 999 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH---HHHHHHHhcchHHHHH-hchhhhhhhhhhhhhcCch---hhhHH
Confidence 556777777888899999999999999999996 7888999999865544 7888999999999999885 78999
Q ss_pred HHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc-c---hhch
Q 000143 1701 IIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-S---LPLL 1776 (2058)
Q Consensus 1701 Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~-~---l~~l 1776 (2058)
+++....++..|+++++.++.++.+..|+.-..|+..+.|.+..+|.|.+..-|..++.+++.+.-+.... + +-.+
T Consensus 1000 lmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHL 1079 (1172)
T KOG0213|consen 1000 LMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHL 1079 (1172)
T ss_pred HHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHH
Confidence 99999999999999999999999999999888999999999999999999999999999999887654322 2 2224
Q ss_pred HHhHhhhcCCCCHHHHHHHHHHHHH
Q 000143 1777 LPAVEDGIFNDNWRIRQSSVELLGD 1801 (2058)
Q Consensus 1777 lp~L~~~l~d~~~~vR~sav~ll~~ 1801 (2058)
+..+...+.+..+.+.++..+.+..
T Consensus 1080 LN~iWpNIle~sPhviqa~~e~~eg 1104 (1172)
T KOG0213|consen 1080 LNLIWPNILETSPHVIQAFDEAMEG 1104 (1172)
T ss_pred HHHhhhhhcCCChHHHHHHHHHHHH
Confidence 4444444555666665554444433
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-25 Score=259.85 Aligned_cols=696 Identities=15% Similarity=0.152 Sum_probs=461.4
Q ss_pred HHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHH------------------
Q 000143 1057 NEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAA------------------ 1117 (2058)
Q Consensus 1057 ~~l~~ll~~-l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a------------------ 1117 (2058)
.++.+|.++ .++||+++|..++.+|.+.. ..+|.+++..+.+.+ +.....+..|-.|
T Consensus 4 ~ef~~l~~n~vLspD~n~rl~aE~ql~~l~---~~dF~qf~~ll~qvl-~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~ 79 (858)
T COG5215 4 SEFRCLGKNHVLSPDPNARLRAEAQLLELQ---SGDFEQFISLLVQVL-CDLNSNDQLRMVAGLILKNSLHANDPELQKG 79 (858)
T ss_pred HHHHHHHhcccCCCCCCccccHHHHHHHhc---cccHHHHHHHHHHHH-hccCCcHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 456666665 68999999999999998875 234545555444443 2233345555443
Q ss_pred -HHHHhhcCCCCCCCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCC-chHHHHHHHHHHHHhhcCCCCCCCCCCchh
Q 000143 1118 -EDIWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPD-SIQGSLSTLFSLYIRDIGLGGDNVDAGWLG 1193 (2058)
Q Consensus 1118 -~~~w~~~~~~~~~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~ 1193 (2058)
...|-....+.++.+ ...+..|.++.+..-..|++++++++.. .|. .|+.++..+... ... +.+...
T Consensus 80 ~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~n----vg~-----eqp~~~ 150 (858)
T COG5215 80 CSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRN----VGD-----EQPVSG 150 (858)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHh----ccc-----cCchHh
Confidence 346776655555566 5567899999999999999999999863 343 566665555543 222 233456
Q ss_pred hHHHHHHHHHhhhhhCCCChH----HHHHHHHHhhc-cCCCHHHHHHHHHHHHH---HH-HhhC-ccchhhHHHHHHHHh
Q 000143 1194 RQGIALALHSAADVLRTKDLP----VIMTFLISRAL-ADTNADVRGRMLNAGIM---II-DKHG-RDNVSLLFPIFENYL 1263 (2058)
Q Consensus 1194 R~~~~~al~~l~~~~~~~~~~----~l~~~Li~~~L-~d~~~~VR~~al~a~~~---~i-~~~g-~~~~~~Ll~~l~~~L 1263 (2058)
+..+..++++++....++++. .++..++..++ ..+...||-.++.|+.. ++ +.+. .+..+.+|++..+.-
T Consensus 151 k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceat 230 (858)
T COG5215 151 KCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEAT 230 (858)
T ss_pred HHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhc
Confidence 778888999998877775442 23333333443 45678899999888543 22 2333 235778888754442
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHh-HhccCCcchHHHH-HHHHhhhCCCCHHHHHHHHHhhHhhHhh----------c
Q 000143 1264 NKKASDEEKYDLVREGVVIFTGALAK-HLAKDDPKVHAVV-DKLLDVLNTPSEAVQRAVSSCLSPLMQS----------M 1331 (2058)
Q Consensus 1264 ~~~~~~~e~~~~vR~~av~~Lg~La~-~l~~~~p~i~~iv-~~Ll~~L~~~~~~V~~av~~~L~~l~~~----------~ 1331 (2058)
+ +.+. ++..+++.||.++.. ++.-..+|++..+ ..+..++.++++.|...+.+--+.+..- .
T Consensus 231 q----~~d~--e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~ 304 (858)
T COG5215 231 Q----GNDE--ELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYL 304 (858)
T ss_pred c----CCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhc
Confidence 2 2222 688999999999885 3333346676544 3445677888888765444322211110 0
Q ss_pred c-----------cchHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHH
Q 000143 1332 Q-----------DEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAK 1394 (2058)
Q Consensus 1332 ~-----------~~~~~~v~~Ll~~L~~------~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~ 1394 (2058)
+ ....+.+|.++..|.+ +++|.+..+|..||..+++..|...+. +++.++.+.+.++ +|+
T Consensus 305 pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~--pVl~FvEqni~~~-~w~ 381 (858)
T COG5215 305 PEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMR--PVLGFVEQNIRSE-SWA 381 (858)
T ss_pred ccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHH--HHHHHHHHhccCc-hhh
Confidence 1 1235678888888876 347999999999999999999988886 6999999999998 999
Q ss_pred HHHHHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----h-HHhHHHHHHHhcc
Q 000143 1395 RREGALLAFECLCEKLGR-LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----G-VKLVLPSLLKGLE 1468 (2058)
Q Consensus 1395 ~R~~al~al~~L~~~lg~-~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~----~-v~~llp~Ll~~L~ 1468 (2058)
.|+++++|||.+.++... ...+|+.+.+|.+...+.|+.-.|...+.+|+++++.++..- + +.......+.++.
T Consensus 382 nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~ 461 (858)
T COG5215 382 NREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLM 461 (858)
T ss_pred hHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhh
Confidence 999999999999998664 467889999999999999999999999999999998776542 1 1233334444444
Q ss_pred CCChHHHHHHHHHHHHHHhhC-------hhhHhhhhhhHHHHHHHHh--cCCCHHHHHHHHHHHHHHHhhcCchhH---H
Q 000143 1469 DKAWRTKQSSVQLLGAMAYCA-------PQQLSQCLPKIVPKLTEVL--TDTHPKVQSAGQTALQQVGSVIKNPEI---A 1536 (2058)
Q Consensus 1469 ~~~~~~R~~a~~~Lg~la~~~-------p~~l~~~L~~Iip~L~~~L--~D~~~~VR~aA~~aL~~l~~~~~~~~i---~ 1536 (2058)
| .++.-..++...-.++.+. +..+.++.+.|+..|++.- .+.+...|.++..+|+.+.....+... .
T Consensus 462 D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a 540 (858)
T COG5215 462 D-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA 540 (858)
T ss_pred c-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 3 2333333444444444443 3446677788888887653 356678899999999999887664321 2
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh
Q 000143 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2058)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py 1616 (2058)
.+.....+.+ .+++..+++.- ...|... -.++...-+..+..+.+ ..+.++.+.
T Consensus 541 ~~~~~~~~kl-------~~~isv~~q~l--~~eD~~~---------------~~elqSN~~~vl~aiir--~~~~~ie~v 594 (858)
T COG5215 541 GFYDYTSKKL-------DECISVLGQIL--ATEDQLL---------------VEELQSNYIGVLEAIIR--TRRRDIEDV 594 (858)
T ss_pred HHHHHHHHHH-------HHHHHHhhhhh--hhHHHHH---------------HHHHHHHHHHHHHHHHH--hcCCCcccH
Confidence 2222222221 23443333200 0000000 01333444444444444 245677888
Q ss_pred HhhhhHHHHHhhCCCCH-HHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh
Q 000143 1617 IGLLLPEVKKVLVDPIP-EVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~~~-~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2058)
.+++|..+.+.++..++ .+......+++.+...+|+. |.+.++|+|...|+ +.+..+-..+..-+|++++.+|.+
T Consensus 595 ~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln-~~d~~v~~~avglvgdlantl~~d 673 (858)
T COG5215 595 EDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALN-CTDRFVLNSAVGLVGDLANTLGTD 673 (858)
T ss_pred HHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhc-chhHHHHHHHHHHHHHHHHHhhhh
Confidence 88899999999987644 45677888999999988875 78899999999995 454445556666779999999987
Q ss_pred ---HHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhcc-CC-C-----HH----HHHH
Q 000143 1693 ---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DE-N-----ES----VRDA 1756 (2058)
Q Consensus 1693 ---~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~-d~-~-----~~----VR~~ 1756 (2058)
|.+.+|..+.+.++++ +..+|.+++++||.++..+|..|.+|++.++-.+.+.-. ++ + .+ ++..
T Consensus 674 f~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~~~~~dy~~~~~~~ 753 (858)
T COG5215 674 FNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDEVYVDDYRKNAVQL 753 (858)
T ss_pred HHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCceeHHHHHHHHHHH
Confidence 5688999999999886 788999999999999999999999999999887776532 11 1 12 3333
Q ss_pred HHHHHHHHHHHhcccchhchHHhHhhhc-------CCCC--HHHHHHHHHHHHHHH
Q 000143 1757 ALGAGHVLVEHYATTSLPLLLPAVEDGI-------FNDN--WRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1757 a~~al~~lv~~~~~~~l~~llp~L~~~l-------~d~~--~~vR~sav~ll~~Ll 1803 (2058)
...++-.|..... ..++.++|.+...+ .|++ ...-++++.++|++.
T Consensus 754 v~~ayVgI~~~~~-nr~~~v~Pyv~sif~~i~~iaeDp~~se~~traalGLigDla 808 (858)
T COG5215 754 VNCAYVGIGDSSK-NRVRSVLPYVISIFHKIGMIAEDPNGSEAHTRAALGLIGDLA 808 (858)
T ss_pred HHHHHHHhhhhhh-hhHHHhhhHHHHHHHHHHHhhcCCccchhHHHHHHHHHHHHH
Confidence 3344444443332 22445666554322 3332 233356788888875
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-24 Score=264.60 Aligned_cols=732 Identities=17% Similarity=0.249 Sum_probs=488.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCC---
Q 000143 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK--- 1211 (2058)
Q Consensus 1135 ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~--- 1211 (2058)
++...-++|+.+|..|..-|..+...+ ++..+..|-+.+. +. ..+...|.++++.|++-...-+++
T Consensus 6 ~le~tlSpD~n~~~~Ae~~l~~~~~~n---f~~F~~~Ls~vl~----n~----~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 6 LLEKTLSPDQNVRKRAEKQLEQAQSQN---FPQFLVLLSEVLA----ND----NSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHhcc---HHHHHHHHHHHHh----cc----CCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 444466889999999998888887654 3333333332221 11 234468999998888754322211
Q ss_pred -----------ChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-hCccchhhHHHHHHHHhcccCCChhHHHHHHHH
Q 000143 1212 -----------DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDK-HGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279 (2058)
Q Consensus 1212 -----------~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~-~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~ 1279 (2058)
....-++..+.+.|+.+.+..+..+..|...+... .+...|+++++.+.....+ +++. .+|++
T Consensus 75 ~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~----~~~~-~~k~~ 149 (859)
T KOG1241|consen 75 QYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGE----EQAS-MVKES 149 (859)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhccc----ccch-HHHHH
Confidence 01222333345788988888888887775555442 3456789999888776443 2232 69999
Q ss_pred HHHHHHHHHhHhccCC--cchHHHHHHHHhhhC--CCCHHHHHHHHHhhHhhHhhcccc-----hHHHHHHHHHHHhcCC
Q 000143 1280 VVIFTGALAKHLAKDD--PKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSD 1350 (2058)
Q Consensus 1280 av~~Lg~La~~l~~~~--p~i~~iv~~Ll~~L~--~~~~~V~~av~~~L~~l~~~~~~~-----~~~~v~~Ll~~L~~~~ 1350 (2058)
+++++|.+|+++++.. .....++-.++...+ .++..||.++.+||..-+...+.. -..++-........++
T Consensus 150 slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~ 229 (859)
T KOG1241|consen 150 SLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSP 229 (859)
T ss_pred HHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCC
Confidence 9999999999887653 123445555555554 357789999988887655443322 2344444444455667
Q ss_pred CHHHHHHHHHHHHHHHhhhCccccchh---chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-------hcccch----h
Q 000143 1351 KYGERRGAAFGLAGVVKGFGISSLKKY---GIAATLREGLADRNSAKRREGALLAFECLCEK-------LGRLFE----P 1416 (2058)
Q Consensus 1351 ~~~vR~~Aa~~L~~l~~~~g~~~l~~~---~il~~L~~~l~~~~~~~~R~~al~al~~L~~~-------lg~~~~----p 1416 (2058)
|..+|.+|..||..+..-+ .+.+..+ .+...-...+.++ +..+.-.++..+..+|+. .++.++ |
T Consensus 230 d~~i~~aa~~ClvkIm~Ly-Y~~m~~yM~~alfaitl~amks~-~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p 307 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLY-YEFMEPYMEQALFAITLAAMKSD-NDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPP 307 (859)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 8999999999999998743 1111111 1222223344544 666666666666666552 121111 1
Q ss_pred --------hHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHH
Q 000143 1417 --------YVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2058)
Q Consensus 1417 --------~l~~llp~Ll~~l~-------D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~ 1481 (2058)
-+..++|.|++.+. |+++.+..+|..||..++...+.+.++.++|.+-+.+++++|+.|.+++.+
T Consensus 308 ~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmA 387 (859)
T KOG1241|consen 308 SSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMA 387 (859)
T ss_pred hhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHH
Confidence 13368888887764 245789999999999999998888899999999999999999999999999
Q ss_pred HHHHHhh-ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch-----hHHhHHHHHHhccCCCChhHHH
Q 000143 1482 LGAMAYC-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-----EIASLVPTLLMGLTDPNDHTKY 1555 (2058)
Q Consensus 1482 Lg~la~~-~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-----~i~~lvp~Ll~~l~d~~~~vr~ 1555 (2058)
+|.+..+ ++..+.+..++.+|.++..+.|+.-.||..+.|+++++++.+..+ +.+.+++
T Consensus 388 FGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~--------------- 452 (859)
T KOG1241|consen 388 FGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLS--------------- 452 (859)
T ss_pred HHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHH---------------
Confidence 9999977 456788999999999999999999999999999999999876522 2233333
Q ss_pred HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC-------CCchhhhHhhhhHHHHHhh
Q 000143 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-------PKDMIPYIGLLLPEVKKVL 1628 (2058)
Q Consensus 1556 al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~-------~~~l~pyl~~ll~~L~~~l 1628 (2058)
.+..+++|. +++-..+|.++.++++...+ .....||++.++..|+..-
T Consensus 453 ------------------------~l~~gL~De-Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~t 507 (859)
T KOG1241|consen 453 ------------------------ALLEGLNDE-PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVT 507 (859)
T ss_pred ------------------------HHHHHhhhC-chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhc
Confidence 344444442 34445555555555532211 1123467888888888775
Q ss_pred C--C-CCHHHHHHHHHHHHHHHHhhcccCccc---hHHHHHh----hccc-CCChHH-------HhhHHHHHHHHHHHhc
Q 000143 1629 V--D-PIPEVRSVAARAIGSLIRGMGEENFPD---LVSWLLD----ALKS-DNSNVE-------RSGAAQGLSEVLAALG 1690 (2058)
Q Consensus 1629 ~--d-~~~~vR~~a~~aLg~l~~~lg~~~~~~---llp~L~~----~L~~-d~~~~~-------R~~aa~~L~~i~~~~g 1690 (2058)
+ | ...+.|.+|.+||+.+++...+++++- +.+..+. ++.+ -.+..+ ...-+..|..+.+.+|
T Consensus 508 dr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~ 587 (859)
T KOG1241|consen 508 DRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG 587 (859)
T ss_pred cccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4 3 457899999999999999887764432 2222333 2221 011112 2234456777778887
Q ss_pred hh---HHHHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 000143 1691 TV---YFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1691 ~~---~l~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~ 1766 (2058)
.+ ..+.+|..+++.++++ +..+.+.++.+++.++..+|.+|..|++.+.|.+..+|.+..+
T Consensus 588 ~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e--------------- 652 (859)
T KOG1241|consen 588 SDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQE--------------- 652 (859)
T ss_pred ccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchH---------------
Confidence 75 4578899999988884 6678889999999999999999999999999999988865432
Q ss_pred HhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHH
Q 000143 1767 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1846 (2058)
Q Consensus 1767 ~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL 1846 (2058)
+.|-.+++.++|++. +
T Consensus 653 ----------------------~qVc~~aVglVgdl~-------------------------------r----------- 668 (859)
T KOG1241|consen 653 ----------------------YQVCAAAVGLVGDLA-------------------------------R----------- 668 (859)
T ss_pred ----------------------HHHHHHHHHHHHHHH-------------------------------H-----------
Confidence 122334555666652 1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHhCcch---h
Q 000143 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS--SERRQVAGRALGELVRKLGERV---L 1921 (2058)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~--~~~R~~A~~~Lg~L~~~lg~~~---l 1921 (2058)
.....+.+|...++..++.+|++++ .+++-....++|+++..+|.++ +
T Consensus 669 ---------------------------aL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl 721 (859)
T KOG1241|consen 669 ---------------------------ALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYL 721 (859)
T ss_pred ---------------------------HHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHH
Confidence 1222344677777888888888874 5678888999999999999774 6
Q ss_pred hchHHHHhhhcC---CC---C-----hhHHHHHHHHHHHHHHhhC----hhhhHhHHhhHHHHHHHHhcCCC--HHHHHH
Q 000143 1922 PSIIPILSRGLK---DP---S-----ASRRQGVCIGLSEVMASAG----KSQLLSFMDELIPTIRTALCDSI--LEVRES 1984 (2058)
Q Consensus 1922 ~~llp~L~~~l~---d~---~-----~~vR~~a~~aL~eii~~~~----~~~l~~~~~~ll~~L~~~L~D~d--~~VR~~ 1984 (2058)
..++|.+.+.-+ |+ + ...|.++..+..-++..++ ...+.||++.++..+...-.|++ ..+...
T Consensus 722 ~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~ 801 (859)
T KOG1241|consen 722 EMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAA 801 (859)
T ss_pred HHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHH
Confidence 778888877642 21 1 2578888888777777765 24566899999999988766553 567788
Q ss_pred HHHHHHHHHHHhChhhH----H-HHHHH-HHHhcCC--CcchHHHHHHHHHHHh
Q 000143 1985 AGLAFSTLFKSAGMQAI----D-EIVPT-LLHALED--DQTSDTALDGLKQILS 2030 (2058)
Q Consensus 1985 Aa~a~~~l~~~~g~~~~----~-~ilp~-Ll~~L~~--~~~~~~al~aL~~i~~ 2030 (2058)
|+.-+|.++...|+..+ + ..+.. |-+..++ ...++.|-.+..++=+
T Consensus 802 a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ikr 855 (859)
T KOG1241|consen 802 ALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWATEEIKR 855 (859)
T ss_pred HHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 88999999988885322 2 23333 3333333 2345666565555443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-22 Score=242.64 Aligned_cols=923 Identities=19% Similarity=0.201 Sum_probs=550.0
Q ss_pred hHHHHHHhhhhhc-ccCCCCCccchHhhHHHHHHHHcCCCCC--CchhhHHHHHHhhcCC----------------CCCC
Q 000143 960 CLFERIVNGLTVS-CKSGPLPVDSFTFVFPIIERILLSPKRT--GLHDDVLQMLYKHMDP----------------LLPL 1020 (2058)
Q Consensus 960 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------------~~~~ 1020 (2058)
..+.|++-++..+ +.|.++++. .+-++-++..++.+-|.. .++..-+..+--|... .-..
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai-~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~ 205 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAI-KCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSC 205 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhh-HHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhc
Confidence 4567777777766 556776654 455667777777663321 1111111111111111 0133
Q ss_pred cHH---HHHHHHHHHHccc--cchHHHHHHHHHHHHhcCCh-------HHHHHHHhhh---cCCChhHHHHHHHhhhcCC
Q 000143 1021 PRL---RMISVLYHVLGVV--PSYQAAIGSALNELCLGLQP-------NEVASALHGV---YTKDVHVRMACLNAVKCIP 1085 (2058)
Q Consensus 1021 ~~~---~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~l~~ll~~l---~~~~~~vR~~al~~L~~~~ 1085 (2058)
||. ++++.|++=++.. +...++--+||+.+|+.... .-+..+.+-+ ...|.+.|..++|+++.+.
T Consensus 206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl 285 (1233)
T KOG1824|consen 206 NRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFL 285 (1233)
T ss_pred CHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHH
Confidence 443 3444444444432 33445567899999987432 2334444434 5679999999999999988
Q ss_pred ccccCCC-CchhhhhhHhh-hhcCCC-------chHHHHHHHHHHhhcCCCCCCCHHhHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1086 AVSTRSL-PENIEVSTSLW-IAVHDP-------EKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALAT 1156 (2058)
Q Consensus 1086 ~~~~~~~-~~~~~~~~~~~-~a~~d~-------~~~~r~~a~~~w~~~~~~~~~~~~~ll~~l~~~~~~vR~aaa~aLa~ 1156 (2058)
..++.++ +...++..... ...+|| +++..+.+.+ ..+.+...+ -.+-+|-+|.||++||+++..
T Consensus 286 ~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed---~eDde~~de----YsDDeD~SWkVRRaAaKcl~a 358 (1233)
T KOG1824|consen 286 RRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLED---EEDDEQDDE----YSDDEDMSWKVRRAAAKCLEA 358 (1233)
T ss_pred HhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhc---cccchhccc----cccccchhHHHHHHHHHHHHH
Confidence 7765444 21112211110 112333 2222222221 111111122 234456689999999999999
Q ss_pred HHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhC------------------------CCC
Q 000143 1157 ALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLR------------------------TKD 1212 (2058)
Q Consensus 1157 ~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~------------------------~~~ 1212 (2058)
++..+++.++...+.+-.....+.+..+. .+|.-+..++..+....+ .++
T Consensus 359 ~IsSR~E~L~~~~q~l~p~lI~RfkEREE------nVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~ 432 (1233)
T KOG1824|consen 359 VISSRLEMLPDFYQTLGPALISRFKEREE------NVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQ 432 (1233)
T ss_pred HHhccHHHHHHHHHHhCHHHHHHHHHHhh------hHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhh
Confidence 99888887777777655444333332211 234333333333322110 112
Q ss_pred hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh---CccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHH-HHHH
Q 000143 1213 LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKH---GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFT-GALA 1288 (2058)
Q Consensus 1213 ~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~---g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~L-g~La 1288 (2058)
.+.+++.+ .+-+.++...-|...+..+.+++... +.++...++|-+...+.+..+. +..+..++.++ +.++
T Consensus 433 ~~~iVkai-~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSss----s~~ki~~L~fl~~~L~ 507 (1233)
T KOG1824|consen 433 VPLIVKAI-QKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSS----SNLKIDALVFLYSALI 507 (1233)
T ss_pred hHHHHHHH-HHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccch----HHHHHHHHHHHHHHHh
Confidence 34455554 33455555556666666667776654 3467888999988888874322 24555554444 4444
Q ss_pred hHhcc-CCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc-----------ccchHHHHHHHHHHHhcC-CCHHHH
Q 000143 1289 KHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-----------QDEAPTLVSRLLDQLMKS-DKYGER 1355 (2058)
Q Consensus 1289 ~~l~~-~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~-----------~~~~~~~v~~Ll~~L~~~-~~~~vR 1355 (2058)
.|-++ -.|+++.+.+.+..+..+|-..+...+......+++.+ .+.+..++...++.+... .|..+|
T Consensus 508 s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVk 587 (1233)
T KOG1824|consen 508 SHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVK 587 (1233)
T ss_pred cCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHH
Confidence 44333 24778888888999999987776554443334444433 112345555666666644 478999
Q ss_pred HHHHHHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCC
Q 000143 1356 RGAAFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQV 1433 (2058)
Q Consensus 1356 ~~Aa~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg-~~~~p~l~~llp~Ll~~l~D~~ 1433 (2058)
..|..|++.++..+|+..-. -..+++.+.+.+++ .-+|-.|+.|+..|+...- -...|.+..++|.+...+....
T Consensus 588 eraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~ 664 (1233)
T KOG1824|consen 588 ERAISCMGQIIANFGDFLGNELPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQ 664 (1233)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHH
Confidence 99999999999998843211 12577777777775 4689999999998887533 2356888899999999998888
Q ss_pred HHHHHHHHHHHHHHHHhhhhh----hHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc
Q 000143 1434 VAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2058)
Q Consensus 1434 ~~VR~aA~~al~~l~~~l~~~----~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~ 1509 (2058)
...|.++..++..++.+++.. .+..++..+...+.+.+.++-..|+..+..++...|.-+...-..+++.++.+++
T Consensus 665 r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~ 744 (1233)
T KOG1824|consen 665 RALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLR 744 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhh
Confidence 899999999999999887653 3355666666666778888888899999999988888777777788888888888
Q ss_pred CCCHHHHHHHHHHHHHHHhhc---Cchh--HHhHHHHHHhccCCCCh--hHHH-------HHHHHHhccccccCChhhHh
Q 000143 1510 DTHPKVQSAGQTALQQVGSVI---KNPE--IASLVPTLLMGLTDPND--HTKY-------SLDILLQTTFVNTVDAPSLA 1575 (2058)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~---~~~~--i~~lvp~Ll~~l~d~~~--~vr~-------al~~L~~~~f~~~~~~~~l~ 1575 (2058)
. |..+..|..++-.+-..+ +++. +..++..+.....++.. -.+. |+.++.. .+ +... -+
T Consensus 745 S--pllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~-~~-~~~s---~s 817 (1233)
T KOG1824|consen 745 S--PLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTC-AC-PQKS---KS 817 (1233)
T ss_pred C--ccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHH-hc-cccc---hh
Confidence 6 556666666655443322 2232 22233332222222211 0011 1111111 00 0000 11
Q ss_pred hHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC
Q 000143 1576 LLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2058)
Q Consensus 1576 ~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~ 1654 (2058)
.....+...++ ..+..+|..|.-.+|.++. ..+.. +.+.+-..+.+.++.|+.+|+.+|..|+|+++.+-
T Consensus 818 ~a~kl~~~~~s~~s~~~ikvfa~LslGElgr----~~~~s-~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn---- 888 (1233)
T KOG1824|consen 818 LATKLIQDLQSPKSSDSIKVFALLSLGELGR----RKDLS-PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN---- 888 (1233)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHhhhhhhcc----CCCCC-cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc----
Confidence 11111111111 1222334444333443332 12211 12223334444455555555555555555554311
Q ss_pred ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHH-HhHHHhchhHHH
Q 000143 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK-YLPRSLGVQFQN 1733 (2058)
Q Consensus 1655 ~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~-~la~~~g~~f~p 1733 (2058)
++.++|.+++.+.+++. | +.-.+..|. .+...--..+.|
T Consensus 889 l~~yLpfil~qi~sqpk---~-------------------------------------QyLLLhSlkevi~~~svd~~~~ 928 (1233)
T KOG1824|consen 889 LPKYLPFILEQIESQPK---R-------------------------------------QYLLLHSLKEVIVSASVDGLKP 928 (1233)
T ss_pred hHhHHHHHHHHHhcchH---h-------------------------------------HHHHHHHHHHHHHHhccchhhh
Confidence 23344444444432211 1 111111111 111112225678
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccc
Q 000143 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~ 1813 (2058)
|.+.+...+.+.+....+..|....++++.++-.-.+ .++|.|...+..+....|.+++..+.-.+
T Consensus 929 ~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe----sLlpkL~~~~~S~a~~~rs~vvsavKfsi---------- 994 (1233)
T KOG1824|consen 929 YVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE----SLLPKLKLLLRSEASNTRSSVVSAVKFSI---------- 994 (1233)
T ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH----HHHHHHHHHhcCCCcchhhhhhheeeeee----------
Confidence 9999999999999988889999999999998754433 38999999998888888888776554332
Q ss_pred cccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH
Q 000143 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS 1893 (2058)
Q Consensus 1814 ~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~ 1893 (2058)
.|+..- .+ . ...+.+..++....|++..||+.|+.++...++|.|.-+++.+|.++|.++..
T Consensus 995 -----sd~p~~-id---~---------~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 995 -----SDQPQP-ID---P---------LLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE 1056 (1233)
T ss_pred -----cCCCCc-cC---H---------HHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh
Confidence 111000 00 0 11133445666778999999999999999999999999999999999998842
Q ss_pred ------------------hcCCCHHHHHHHHHHHHHHHHHhCcc-hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhh
Q 000143 1894 ------------------LASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA 1954 (2058)
Q Consensus 1894 ------------------L~~~~~~~R~~A~~~Lg~L~~~lg~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~ 1954 (2058)
.-|+.-++|+.|.+|+..+...+-+. ...+++..+..++.|. .++|.-....+..+...
T Consensus 1057 TkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~l- 1134 (1233)
T KOG1824|consen 1057 TKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADL- 1134 (1233)
T ss_pred hhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhh-
Confidence 23456789999999999999887655 3678888999999886 67887665566655544
Q ss_pred ChhhhHhHHhhHHHHHHHHhc------------CCCHHHHHHHHHHHHHHHH
Q 000143 1955 GKSQLLSFMDELIPTIRTALC------------DSILEVRESAGLAFSTLFK 1994 (2058)
Q Consensus 1955 ~~~~l~~~~~~ll~~L~~~L~------------D~d~~VR~~Aa~a~~~l~~ 1994 (2058)
.|..+.+-+++++..|++.+. |...+..+.|.+++..+.+
T Consensus 1135 cPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~~L~~ 1186 (1233)
T KOG1824|consen 1135 CPSAVLQRLDRLVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVAALLT 1186 (1233)
T ss_pred CcHHHHHHHHHHHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHHHHhc
Confidence 456677788999999998663 3345677788888888743
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-22 Score=236.33 Aligned_cols=757 Identities=15% Similarity=0.176 Sum_probs=515.9
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc-cchhhHHHHHHH-HhcccCCChhHHHHHHHHHHHHHHHHHhHhc
Q 000143 1215 VIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFEN-YLNKKASDEEKYDLVREGVVIFTGALAKHLA 1292 (2058)
Q Consensus 1215 ~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~-~~~~~Ll~~l~~-~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~ 1292 (2058)
.+++.|+ -..+..+..|..++..+..-...+|. .-+++++|++.. .|++ .-|+..+..+..+-..++
T Consensus 364 ~i~~llL--kvKNG~ppmRk~~LR~ltdkar~~ga~~lfnqiLpllMs~tLeD---------qerhllVkvidriLyklD 432 (1172)
T KOG0213|consen 364 KIMRLLL--KVKNGTPPMRKSALRILTDKARNFGAGPLFNQILPLLMSPTLED---------QERHLLVKVIDRILYKLD 432 (1172)
T ss_pred HHHHHHH--hhcCCCchhHHHHHHHHHHHHHhhccHHHHHHHHHHHcCccccc---------hhhhhHHHHHHHHHHhhc
Confidence 4566554 25677788899888877665556654 357888887643 3322 457778888888876666
Q ss_pred cC-CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc
Q 000143 1293 KD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2058)
Q Consensus 1293 ~~-~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~ 1371 (2058)
.. .||++.|+-..-..+-+++...+..--+.++.|++..+ +...+..+-..+ ++.++-+|...+.+.+.+++.+|.
T Consensus 433 dlvrpYVhkILvViepllided~yar~egreIisnLakaaG--la~mistmrpDi-dn~deYVRnttarafavvasalgi 509 (1172)
T KOG0213|consen 433 DLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAG--LATMISTMRPDI-DNKDEYVRNTTARAFAVVASALGI 509 (1172)
T ss_pred ccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhh--hHHHHHhhcCCc-ccccHHHHHHHHHHHHHHHHHhCc
Confidence 54 36666554333334456665555433445555554432 122222222222 233678999999999999999986
Q ss_pred cccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1372 SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2058)
Q Consensus 1372 ~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l 1451 (2058)
. .++|+|.....++++|+.|+.++.+...|+.-+|...-||+..++..+-.++.|++..||..++.++..++...
T Consensus 510 p-----~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa 584 (1172)
T KOG0213|consen 510 P-----ALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA 584 (1172)
T ss_pred H-----HHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc
Confidence 4 56899999999999999999999999999999999899999999999999999999999999999999999998
Q ss_pred hhhhH---HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1452 SAQGV---KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2058)
Q Consensus 1452 ~~~~v---~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2058)
.++++ +.++.+|++++...--..-.+-+.++|.++.........|+ ..++-.+..-.+.++.+.++..+..+.+.+
T Consensus 585 ~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc 664 (1172)
T KOG0213|consen 585 TPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCC 664 (1172)
T ss_pred CCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHh
Confidence 88765 78899998888654444444455666666654444444433 466777777888899999999999999998
Q ss_pred hhcC-ch-hH-HhHHHHHHhccCC-------CChh--HHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHH
Q 000143 1528 SVIK-NP-EI-ASLVPTLLMGLTD-------PNDH--TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595 (2058)
Q Consensus 1528 ~~~~-~~-~i-~~lvp~Ll~~l~d-------~~~~--vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~ 1595 (2058)
..-+ +| ++ .+++|.++...-. ++.. +..++....+ +. ...++.-+..-++|+++.-|++
T Consensus 665 ~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~K------vG---~~~~v~R~v~~lkde~e~yrkm 735 (1172)
T KOG0213|consen 665 ATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAK------VG---SDPIVSRVVLDLKDEPEQYRKM 735 (1172)
T ss_pred cccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHH------hC---chHHHHHHhhhhccccHHHHHH
Confidence 8655 33 44 6788887764321 1111 0111111110 00 1223444444567888889999
Q ss_pred HHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCCh
Q 000143 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSN 1672 (2058)
Q Consensus 1596 A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~ 1672 (2058)
++..+..+...++...--......++.++..+++....+.- .....||.++..+|.. |+++++...+..|++ ++.
T Consensus 736 ~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnn-ksa 813 (1172)
T KOG0213|consen 736 VAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNN-KSA 813 (1172)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcC-CCh
Confidence 98888887766654322233445678888888775544433 5678999999999873 889999999899984 566
Q ss_pred HHHhhHHHHHHHHH---HHhchhH-HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch-hHHHhHHHHHHHHHHhcc
Q 000143 1673 VERSGAAQGLSEVL---AALGTVY-FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDGLA 1747 (2058)
Q Consensus 1673 ~~R~~aa~~L~~i~---~~~g~~~-l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~-~f~pyl~~ilp~Ll~~L~ 1747 (2058)
.+|..++..++.++ ..+|.+. +..+--.+++.+....++|-..++.++..+....|- ...|-+..++|.+...|.
T Consensus 814 ~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILk 893 (1172)
T KOG0213|consen 814 KVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILK 893 (1172)
T ss_pred hHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhh
Confidence 69999888776554 4555553 334444567778888899999999999999888875 345677889999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcccc----hhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCC
Q 000143 1748 DENESVRDAALGAGHVLVEHYATTS----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1823 (2058)
Q Consensus 1748 d~~~~VR~~a~~al~~lv~~~~~~~----l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~ 1823 (2058)
+..+.|.++...-++.|+..-.+.. .-.+.=.|.+.+...+-.+|.+++..+|-+..
T Consensus 894 nrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak------------------- 954 (1172)
T KOG0213|consen 894 NRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK------------------- 954 (1172)
T ss_pred hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-------------------
Confidence 9999999999999998876644321 11134456666666677899999988887632
Q ss_pred cchHHHHHHHHHHhChhhHHHHHHHHHHhhc--CCCHHHH-HHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHH
Q 000143 1824 ASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLSVR-QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE 1900 (2058)
Q Consensus 1824 ~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~--D~~~~VR-~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~ 1900 (2058)
..|+. ++|..|+..+. |....|. ..|+.+.+..+ +. -..+|.++ ....-++..
T Consensus 955 ------------aIGPq---dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c---~p--FtVLPalm----neYrtPe~n 1010 (1172)
T KOG0213|consen 955 ------------AIGPQ---DVLATLLNNLKVQERQNRVCTTVAIAIVAETC---GP--FTVLPALM----NEYRTPEAN 1010 (1172)
T ss_pred ------------hcCHH---HHHHHHHhcchHHHHHhchhhhhhhhhhhhhc---Cc--hhhhHHHH----hhccCchhH
Confidence 22221 23333333221 1101111 11222322222 11 13445544 445778999
Q ss_pred HHHHHHHHHHHHHHHhCcc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCC
Q 000143 1901 RRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977 (2058)
Q Consensus 1901 ~R~~A~~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~ 1977 (2058)
+++-...+++-+++..|+. +.-.+.|.|.+.+.|+|+..|+.++..+..+.-++..-...+.+-++++.+..-+-++
T Consensus 1011 VQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~ 1090 (1172)
T KOG0213|consen 1011 VQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILET 1090 (1172)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCC
Confidence 9999999999999998865 4668899999999999999999999988888766554444455567778888777899
Q ss_pred CHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhcCCccchhhhhhhccCC
Q 000143 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ--TSDTALDGLKQILSVRTTAVLPHILPKLVHLP 2048 (2058)
Q Consensus 1978 d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~~--~~~~al~aL~~i~~~~~~~~lp~lip~L~~~p 2048 (2058)
.|.|.++...|+..+...+|+. .++.+.++.|--|. .|+ .+.-+-..|-+.++..+-...|..-..|
T Consensus 1091 sPhviqa~~e~~eg~r~~Lg~~---~~~~Y~~QGLFHParkVR~-~yw~vyn~my~~~~dalv~~ypv~ed~p 1159 (1172)
T KOG0213|consen 1091 SPHVIQAFDEAMEGLRVALGPQ---AMLKYCLQGLFHPARKVRK-RYWTVYNSMYHGSQDALVACYPVEEDDP 1159 (1172)
T ss_pred ChHHHHHHHHHHHHHHHHhchH---HHHHHHHHhccCcHHHHHH-HHHHHHHhHhhcccchhhhccccCCCCc
Confidence 9999999999999999888864 46778888886553 333 3333444444443433333344444333
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-22 Score=239.37 Aligned_cols=679 Identities=16% Similarity=0.208 Sum_probs=440.3
Q ss_pred CCcHHHHHHHHHHHHccccchHHHHHHHHHHHHhcCCh-HHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCch
Q 000143 1019 PLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQP-NEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPEN 1095 (2058)
Q Consensus 1019 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ll~~l~~~--~~~vR~~al~~L~~~~~~~~~~~~~~ 1095 (2058)
..-...+...|+.+.++.+..++.+.+.|.+.+....+ +-+..+|--+.+. +.+-|+-....++.+.-... ++ .
T Consensus 164 e~~Er~v~rllLkvKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeDqerhl~vk~idr~Ly~ld-dl--~ 240 (975)
T COG5181 164 EGDERDVYRLLLKVKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELEDQERHLVVKLIDRLLYGLD-DL--K 240 (975)
T ss_pred ccchHhHHHHHhhcccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhhhhhHhHHHHHHHHHHhcc-cc--c
Confidence 44556788899999999999999999999999999876 3445555444442 45556666665555431110 11 0
Q ss_pred hhhhhHhhh----hcCCCchHHHHHHHHHHhh----cCCCCCCCHHhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHH
Q 000143 1096 IEVSTSLWI----AVHDPEKSVAEAAEDIWDR----YGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQG 1167 (2058)
Q Consensus 1096 ~~~~~~~~~----a~~d~~~~~r~~a~~~w~~----~~~~~~~~~~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~ 1167 (2058)
..|..+|.. ...|++.-.|...+++-.. .|+.. .+..+-+++++.++.||+..+++.+..+.... +.+
T Consensus 241 ~pyvhkILvVv~pllided~~~r~~g~eii~nL~~~~Gl~~--~vs~mrpDi~~~deYVRnvt~ra~~vva~alg--v~~ 316 (975)
T COG5181 241 VPYVHKILVVVGPLLIDEDLKRRCMGREIILNLVYRCGLGF--SVSSMRPDITSKDEYVRNVTGRAVGVVADALG--VEE 316 (975)
T ss_pred ccceeeEEEEeeccccCccHHHhcccHHHHHHHHHHhccce--eeeeccCCcccccHHHHHHHHHHHHHHHHhhC--cHH
Confidence 112222221 2346666666666554433 33321 11445578899999999999999999886542 233
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCChHH---HHHHHHHhhccCCCHHHHHHHHHHHHHHH
Q 000143 1168 SLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPV---IMTFLISRALADTNADVRGRMLNAGIMII 1244 (2058)
Q Consensus 1168 ~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~~~~---l~~~Li~~~L~d~~~~VR~~al~a~~~~i 1244 (2058)
++..|-.... +..+|+.|+++..+...++..++...+++ ++..+ .+++.|+...||-....+...+.
T Consensus 317 llpfl~a~c~---------SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci-~~~l~D~~~~vRi~tA~alS~la 386 (975)
T COG5181 317 LLPFLEALCG---------SRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCI-SKLLKDRSRFVRIDTANALSYLA 386 (975)
T ss_pred HHHHHHHHhc---------CccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHH-HHHhhccceeeeehhHhHHHHHH
Confidence 3443333321 13589999999999999999888766554 44443 57899999999988877776666
Q ss_pred HhhCc---cchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccC--CcchHHHHHHHHhhhCCCCHHHHHH
Q 000143 1245 DKHGR---DNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSEAVQRA 1319 (2058)
Q Consensus 1245 ~~~g~---~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~--~p~i~~iv~~Ll~~L~~~~~~V~~a 1319 (2058)
+..++ +.++.++..+++-..+. .+.+ -.+-+.+.|.+..-+++. ..+..+....++..+++|+++....
T Consensus 387 e~~~Pygie~fd~vl~pLw~g~~~h-rgk~-----l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~ 460 (975)
T COG5181 387 ELVGPYGIEQFDEVLCPLWEGASQH-RGKE-----LVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKD 460 (975)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHhc-CCch-----HHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchh
Confidence 65554 45566666665554331 1111 111123333333222211 0124566667777788887665432
Q ss_pred HHHhhHhhHhhcccchHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHH
Q 000143 1320 VSSCLSPLMQSMQDEAPT-LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398 (2058)
Q Consensus 1320 v~~~L~~l~~~~~~~~~~-~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~ 1398 (2058)
+...... ....+...+. +..++...+++. .|. |+.|. +.... ..
T Consensus 461 ~l~v~~~-C~~v~~~tp~~lr~~v~pefF~~-fw~-rr~A~-----------dr~~~---------------------k~ 505 (975)
T COG5181 461 LLVVERI-CDKVGTDTPWKLRDQVSPEFFSP-FWR-RRSAG-----------DRRSY---------------------KQ 505 (975)
T ss_pred HHHHHHH-HhccCCCCHHHHHHhhcHHhhch-HHH-hhhcc-----------ccccc---------------------ce
Confidence 2111100 0111111111 111111111111 121 11111 00000 00
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-----HhHHHHHHHhccCCChH
Q 000143 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-----KLVLPSLLKGLEDKAWR 1473 (2058)
Q Consensus 1399 al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-----~~llp~Ll~~L~~~~~~ 1473 (2058)
+..+-..+++..|. | ++...+++.+.|+.+-.|..++.+..+++..++.-++ ..++..++.++++++-.
T Consensus 506 v~~ttvilAk~~g~---~---~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t 579 (975)
T COG5181 506 VVLTTVILAKMGGD---P---RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT 579 (975)
T ss_pred eehhHHHHHHHcCC---h---HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc
Confidence 11222334444442 2 4556777889999888999999998888888776443 45666777777655433
Q ss_pred HHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc----hhHHhHHHHHHhccCCC
Q 000143 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASLVPTLLMGLTDP 1549 (2058)
Q Consensus 1474 ~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~~lvp~Ll~~l~d~ 1549 (2058)
+.. .+..++.......-...+|++.|+..+++.|+.+.|.||..|+...+.++.++.+ ..+..+-..|.+.+...
T Consensus 580 ~~~-il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ 658 (975)
T COG5181 580 VGL-ILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGED 658 (975)
T ss_pred ccE-EEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcc
Confidence 211 0111222221122235689999999999999999999999999999999988873 34566667778888766
Q ss_pred ChhHH-HHHHHHHhccccccCC--hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHH
Q 000143 1550 NDHTK-YSLDILLQTTFVNTVD--APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK 1626 (2058)
Q Consensus 1550 ~~~vr-~al~~L~~~~f~~~~~--~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~ 1626 (2058)
.+.+- ..+.++..+..++..+ .|....++|.+...|+++...+.......+|.+|..-.+......|+ .+.-.|..
T Consensus 659 ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM-RIcfeLvd 737 (975)
T COG5181 659 YPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWM-RICFELVD 737 (975)
T ss_pred cHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH-HHHHHHHH
Confidence 65542 2333333222222221 24456788888888888888888888899999998522222233343 34556677
Q ss_pred hhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhc
Q 000143 1627 VLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS 1706 (2058)
Q Consensus 1627 ~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~ 1706 (2058)
.+...+.++|..|...+|.+++++|++ +++..|++.|+.++.. .|.++..+++-+++.+|+- .++|.++....
T Consensus 738 ~Lks~nKeiRR~A~~tfG~Is~aiGPq---dvL~~LlnnLkvqeRq-~RvctsvaI~iVae~cgpf---sVlP~lm~dY~ 810 (975)
T COG5181 738 SLKSWNKEIRRNATETFGCISRAIGPQ---DVLDILLNNLKVQERQ-QRVCTSVAISIVAEYCGPF---SVLPTLMSDYE 810 (975)
T ss_pred HHHHhhHHHHHhhhhhhhhHHhhcCHH---HHHHHHHhcchHHHHH-hhhhhhhhhhhhHhhcCch---hhHHHHHhccc
Confidence 777888999999999999999999996 7888999999865544 7889999999999999985 78999999999
Q ss_pred cCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1707 HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1707 ~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
.++..|+++++.++.++.+..|+.-..|+..+.|.+-.++.|.++.-|..++..++.++-+...
T Consensus 811 TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 811 TPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred CchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999998876543
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-20 Score=242.55 Aligned_cols=616 Identities=18% Similarity=0.288 Sum_probs=426.7
Q ss_pred hhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCc---chHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHh
Q 000143 1253 SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDP---KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329 (2058)
Q Consensus 1253 ~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p---~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~ 1329 (2058)
..+...+...+.++ ....|++.+.+|-.+..|+....+ ..++|...+...|.|.++.+|..+++-++ +++
T Consensus 817 ~~~~~~l~~~~~s~------nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlg-lVY 889 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSP------NPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLG-LVY 889 (1702)
T ss_pred HHHHHHHHHhcCCC------CHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCce-EEE
Confidence 34455555554442 237899999999999999875432 35677788889999999999997777654 344
Q ss_pred hcccc--hHHHHHHHHHHHhcCCC---------------------HHHHHHHHHHHHHHHhhhCccccchhchHHHHHHH
Q 000143 1330 SMQDE--APTLVSRLLDQLMKSDK---------------------YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG 1386 (2058)
Q Consensus 1330 ~~~~~--~~~~v~~Ll~~L~~~~~---------------------~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~ 1386 (2058)
.+++. -.++++.++++|..+.. .+-.....+-|..++..+|.. +++=...+.
T Consensus 890 elgd~~~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qP-----dLVYKFM~L 964 (1702)
T KOG0915|consen 890 ELGDSSLKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQP-----DLVYKFMQL 964 (1702)
T ss_pred ecCCchhHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCCh-----HHHHHHHHH
Confidence 44332 46788899988876431 011233445666777777633 333334455
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh---hhhhHHhHHHHH
Q 000143 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL---SAQGVKLVLPSL 1463 (2058)
Q Consensus 1387 l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l---~~~~v~~llp~L 1463 (2058)
.++.-.|..|.||.+.|+.|++..|..++||+.+++|.+...--|++..|+.+....++.++..- -.+..+.++..|
T Consensus 965 Anh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen 965 ANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDEL 1044 (1702)
T ss_pred hhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 55555899999999999999999999999999999999999999999999999998888887442 223347889999
Q ss_pred HHhccCCChHHHHHHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHH
Q 000143 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2058)
Q Consensus 1464 l~~L~~~~~~~R~~a~~~Lg~la~~~p-~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~L 1542 (2058)
+..+.+..||+|.++|.+|..+..+.| +++...+|++...++....|-+..||++|-.+...+++.+
T Consensus 1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~------------ 1112 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC------------ 1112 (1702)
T ss_pred HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 999999999999999999999999876 4588899999999999999999999999988887777642
Q ss_pred HhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHH-HhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhh
Q 000143 1543 LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH-RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621 (2058)
Q Consensus 1543 l~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~-~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll 1621 (2058)
-.+.|+.+.+. ....++.++|.+. .++-..-.++|+.+...+..|++. .++.+.||.+.++
T Consensus 1113 -vr~~d~~~~~~---------------~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Ks--sg~~lkP~~~~LI 1174 (1702)
T KOG0915|consen 1113 -VRICDVTNGAK---------------GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKS--SGKELKPHFPKLI 1174 (1702)
T ss_pred -hhhcccCCccc---------------HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHh--chhhhcchhhHHH
Confidence 23334432221 0122344666654 344466689999999888888874 5578999999999
Q ss_pred HHHHHhhCCCCHHHHHH-HHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHH
Q 000143 1622 PEVKKVLVDPIPEVRSV-AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPD 1700 (2058)
Q Consensus 1622 ~~L~~~l~d~~~~vR~~-a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~ 1700 (2058)
|.|.++...-.+.|-.. +.++.+.=. + .+++++- +...-.-..+++..++.......++++.|.
T Consensus 1175 p~ll~~~s~lE~~vLnYls~r~~~~e~---------e----alDt~R~--s~aksspmmeTi~~ci~~iD~~vLeelip~ 1239 (1702)
T KOG0915|consen 1175 PLLLNAYSELEPQVLNYLSLRLINIET---------E----ALDTLRA--SAAKSSPMMETINKCINYIDISVLEELIPR 1239 (1702)
T ss_pred HHHHHHccccchHHHHHHHHhhhhhHH---------H----HHHHHHH--hhhcCCcHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999988766665332 222211111 1 1122221 000112345677788888777788999999
Q ss_pred HHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHh
Q 000143 1701 IIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPA 1779 (2058)
Q Consensus 1701 Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~ 1779 (2058)
+.+.++.. .-..|.++...+.-+..-+|.+..||...++..++.++.|.++.+|..-..|++.++..-+++....++..
T Consensus 1240 l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~ 1319 (1702)
T KOG0915|consen 1240 LTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIET 1319 (1702)
T ss_pred HHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99998876 66778899999999999999999999999999999999999999999999999998876665443333333
Q ss_pred Hh-hhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCH
Q 000143 1780 VE-DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSL 1858 (2058)
Q Consensus 1780 L~-~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~ 1858 (2058)
+. ..+.+. ...+..++..+.++... ..+.|. ...+.+++.++...++...
T Consensus 1320 ~l~~~l~k~-es~~siscatis~Ian~---------------------------s~e~Lk-n~asaILPLiFLa~~ee~K 1370 (1702)
T KOG0915|consen 1320 LLADLLGKD-ESLKSISCATISNIANY---------------------------SQEMLK-NYASAILPLIFLAMHEEEK 1370 (1702)
T ss_pred HHHHHhccC-CCccchhHHHHHHHHHh---------------------------hHHHHH-hhHHHHHHHHHHHHhHHHH
Confidence 32 222221 11123333333332110 011111 2334667777776655422
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCcc----hhhchHHHHhhhcC
Q 000143 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGER----VLPSIIPILSRGLK 1933 (2058)
Q Consensus 1859 ~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~-L~~~~~~~R~~A~~~Lg~L~~~lg~~----~l~~llp~L~~~l~ 1933 (2058)
....---++|.++++....+++-+.+.++..+... .++..+..|..++..+..++...... +.-.+.+.+...++
T Consensus 1371 a~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~ 1450 (1702)
T KOG0915|consen 1371 ANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLN 1450 (1702)
T ss_pred HHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhh
Confidence 22233346777777665566666777666666544 55566999999999998888765533 34456677777777
Q ss_pred CCChhHHHHHHHHHHHHHHhh
Q 000143 1934 DPSASRRQGVCIGLSEVMASA 1954 (2058)
Q Consensus 1934 d~~~~vR~~a~~aL~eii~~~ 1954 (2058)
.+..+.++-...++.+.+..+
T Consensus 1451 GRiwdGKe~iLKAl~~~~~a~ 1471 (1702)
T KOG0915|consen 1451 GRIWDGKEEILKALASAFEAG 1471 (1702)
T ss_pred ccccccHHHHHHHHHHHHHHh
Confidence 665555555555555444444
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-19 Score=212.94 Aligned_cols=725 Identities=15% Similarity=0.166 Sum_probs=461.8
Q ss_pred ccCCCHHHHHHHHHHHHHHHHhhCcc-chhhHHHHHHH-HhcccCCChhHHHHHHHHHHHHHHHHHhHhccC-CcchHHH
Q 000143 1225 LADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFEN-YLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAV 1301 (2058)
Q Consensus 1225 L~d~~~~VR~~al~a~~~~i~~~g~~-~~~~Ll~~l~~-~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~-~p~i~~i 1301 (2058)
..+.++..|...+..+..-.-.+|.. -++.++|++.. .|++ .-|+..+..+..+-..++.. .||.+.|
T Consensus 177 vKNG~~~mR~~~lRiLtdkav~fg~~~vfnkvLp~lm~r~LeD---------qerhl~vk~idr~Ly~lddl~~pyvhkI 247 (975)
T COG5181 177 VKNGGKRMRMEGLRILTDKAVNFGAAAVFNKVLPMLMSRELED---------QERHLVVKLIDRLLYGLDDLKVPYVHKI 247 (975)
T ss_pred cccCCchhhHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhh---------hhhHhHHHHHHHHHHhcccccccceeeE
Confidence 45667778888877766555555554 47788887644 3333 45788888888887666654 3666654
Q ss_pred HHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHH
Q 000143 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2058)
Q Consensus 1302 v~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~ 1381 (2058)
+-..-..+-+++..++..--+.+..++...+-. ..+..+-..+ .+.++-+|...+.+.+.+++.+|.+ .++|
T Consensus 248 LvVv~pllided~~~r~~g~eii~nL~~~~Gl~--~~vs~mrpDi-~~~deYVRnvt~ra~~vva~algv~-----~llp 319 (975)
T COG5181 248 LVVVGPLLIDEDLKRRCMGREIILNLVYRCGLG--FSVSSMRPDI-TSKDEYVRNVTGRAVGVVADALGVE-----ELLP 319 (975)
T ss_pred EEEeeccccCccHHHhcccHHHHHHHHHHhccc--eeeeeccCCc-ccccHHHHHHHHHHHHHHHHhhCcH-----HHHH
Confidence 433333445566555443334445555443211 1111111111 2346779999999999999999843 6789
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH---Hh
Q 000143 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KL 1458 (2058)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v---~~ 1458 (2058)
+|.....+.++|+.|+.++.+...||.-+|...-+|+..++..+-.++.|++..||..++.++..+++...++++ +.
T Consensus 320 fl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~ 399 (975)
T COG5181 320 FLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDE 399 (975)
T ss_pred HHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHH
Confidence 999999999999999999999999999999989999999999999999999999999999999999999888765 77
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhh-ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC--ch--
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--NP-- 1533 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~-~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~--~~-- 1533 (2058)
++-+|+++.....-..-.+-+.+.|.+... .|+...-+-...+..+...++.++.+.......... .|...+ .|
T Consensus 400 vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~-~C~~v~~~tp~~ 478 (975)
T COG5181 400 VLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVER-ICDKVGTDTPWK 478 (975)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHH-HHhccCCCCHHH
Confidence 888888877543333333334455544433 223333333455555566666555444433222222 222111 11
Q ss_pred hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHH-hhcCC-CHHHHHHHHHHHHHHHhhhCCCC
Q 000143 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR-GLRER-SAETKKKAAQIVGNMCSLVTEPK 1611 (2058)
Q Consensus 1534 ~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~-~L~d~-s~~vr~~A~~~l~~L~~~l~~~~ 1611 (2058)
+..++.|.++... -.+ ...|+ +.. ++..+-..+++..++
T Consensus 479 lr~~v~pefF~~f----------------------------------w~rr~A~dr~~~k---~v~~ttvilAk~~g~-- 519 (975)
T COG5181 479 LRDQVSPEFFSPF----------------------------------WRRRSAGDRRSYK---QVVLTTVILAKMGGD-- 519 (975)
T ss_pred HHHhhcHHhhchH----------------------------------HHhhhcccccccc---eeehhHHHHHHHcCC--
Confidence 1133333332211 000 00111 111 111122233343344
Q ss_pred chhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCcc-----chHHHHHhhcccCCChHHHhhHHHHHHHHH
Q 000143 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP-----DLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2058)
Q Consensus 1612 ~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~-----~llp~L~~~L~~d~~~~~R~~aa~~L~~i~ 1686 (2058)
+.+...+++.+.|+....|..++.+...+...+|.--++ .++..++..++.+... + .....|++.+.
T Consensus 520 ------~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t-~-~~il~~f~tv~ 591 (975)
T COG5181 520 ------PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTT-V-GLILPCFSTVL 591 (975)
T ss_pred ------hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccc-c-cEEEeccccee
Confidence 235666777788887778888888888888877754332 2444444444432221 1 12233445444
Q ss_pred HHh---chhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchh-HHHhHHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 000143 1687 AAL---GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAALGAGH 1762 (2058)
Q Consensus 1687 ~~~---g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~-f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~ 1762 (2058)
..+ |+.++..++..++..++++.+.+|+.++.+++.++..+... =...+..+=-.+...+..+.++|-...+.|+.
T Consensus 592 vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~ 671 (975)
T COG5181 592 VSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAIC 671 (975)
T ss_pred eehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHH
Confidence 333 45588899999999999999999999999999988876421 01234455566778899999999999999999
Q ss_pred HHHHHhccc----chhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhC
Q 000143 1763 VLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838 (2058)
Q Consensus 1763 ~lv~~~~~~----~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg 1838 (2058)
.|.....-. -+..++|.|...+.+.+.+|..+.+.++|.+... ..+-.+..+..
T Consensus 672 ~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~--------------~peyi~~rEWM-------- 729 (975)
T COG5181 672 SIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMN--------------SPEYIGVREWM-------- 729 (975)
T ss_pred HHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhc--------------CcccCCHHHHH--------
Confidence 887765533 3556899999999999999999999999887311 11111111111
Q ss_pred hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc
Q 000143 1839 RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE 1918 (2058)
Q Consensus 1839 ~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~ 1918 (2058)
++-=.|...+...+..+|.+|...++-+....+.. +++..++ ..|...+...|....-+++-+++.+|.
T Consensus 730 -----RIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq--dvL~~Ll----nnLkvqeRq~RvctsvaI~iVae~cgp 798 (975)
T COG5181 730 -----RICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ--DVLDILL----NNLKVQERQQRVCTSVAISIVAEYCGP 798 (975)
T ss_pred -----HHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH--HHHHHHH----hcchHHHHHhhhhhhhhhhhhHhhcCc
Confidence 11111222234556789999999988877655432 4444444 445667777888888888888887774
Q ss_pred chhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Q 000143 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2058)
Q Consensus 1919 ~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~ 1998 (2058)
- .++|.+..-...+..++.+|+..+++.+++..+.. ..+|+-.+.|.+..++.|.|+.-|+.|+..+..+.-+...
T Consensus 799 f---sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~-s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g 874 (975)
T COG5181 799 F---SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQA-SLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG 874 (975)
T ss_pred h---hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHH-HHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC
Confidence 3 57888888888899999999999999999998764 5689999999999999999999999999999888754322
Q ss_pred hhHHHHHHHHHHhcC------CCcch---HHHHHHHHHHHhhcCCccchhhhhhhccCCCchhh
Q 000143 1999 QAIDEIVPTLLHALE------DDQTS---DTALDGLKQILSVRTTAVLPHILPKLVHLPLSYVS 2053 (2058)
Q Consensus 1999 ~~~~~ilp~Ll~~L~------~~~~~---~~al~aL~~i~~~~~~~~lp~lip~L~~~p~~~~~ 2053 (2058)
.--++..=.|++.|- +|... +..+.++.+.+. +..+..++..-|++|.-+..+
T Consensus 875 tg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg--~g~~m~Yv~qGLFHPs~~VRk 936 (975)
T COG5181 875 TGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLG--SGAMMKYVQQGLFHPSSTVRK 936 (975)
T ss_pred cccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhc--cHHHHHHHHHhccCchHHHHH
Confidence 111222223333321 12221 223444444443 345666777777776555443
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-20 Score=234.87 Aligned_cols=555 Identities=22% Similarity=0.262 Sum_probs=415.3
Q ss_pred CHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC
Q 000143 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2058)
Q Consensus 1351 ~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~ 1430 (2058)
+-.-|..+..-+..+.-..|.+.. ...++|++.+.. ++ +..++..+..-++.+....|. ..|...++|.+.....
T Consensus 95 di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~-~dev~~~~a~~~~~~~~~v~~--~~~~~~ll~~le~l~~ 169 (759)
T KOG0211|consen 95 DIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DD-EDEVLLDLAEQLGTFLPDVGG--PEYAHMLLPPLELLAT 169 (759)
T ss_pred hhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cc-hhHHHHHHHHHhcccchhccc--hhHHHHhhHHHHhhhH
Confidence 455566666667777767777665 458899999988 44 566777666666666554431 2334456777778888
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHH-HHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHHh
Q 000143 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT-KQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVL 1508 (2058)
Q Consensus 1431 D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~-R~~a~~~Lg~la~~~p~-~l~~~L~~Iip~L~~~L 1508 (2058)
++...||+.+.+++..++..++.......+-+++..+...+|+. |..+|.+++......++ .+.. ++.|......
T Consensus 170 ~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~vk~---elr~~~~~lc 246 (759)
T KOG0211|consen 170 VEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAVKR---ELRPIVQSLC 246 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHHHH---HHHHHHHhhc
Confidence 88999999999999999998888777555556666666668876 55678888887766663 3443 5556667788
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC
Q 000143 1509 TDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2058)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i-~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d 1587 (2058)
+|..+.||.+++.-++.++..+..... ..++|.+... ..|
T Consensus 247 ~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L---------------------------------------~~D 287 (759)
T KOG0211|consen 247 QDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQL---------------------------------------LRD 287 (759)
T ss_pred cccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhh---------------------------------------hhc
Confidence 999999999999999999987754322 3334444444 444
Q ss_pred CCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-CccchHHHHHhhc
Q 000143 1588 RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDAL 1666 (2058)
Q Consensus 1588 ~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-~~~~llp~L~~~L 1666 (2058)
....||..|.....++...+.++. +....+.+.+.+...|+.|.+|......+..+...+|++ ..++..+.....+
T Consensus 288 dqdsVr~~a~~~~~~l~~l~~~~~---d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~ 364 (759)
T KOG0211|consen 288 DQDSVREAAVESLVSLLDLLDDDD---DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLL 364 (759)
T ss_pred chhhHHHHHHHHHHHHHHhcCCch---hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHh
Confidence 444566666666666666543322 345567888999999999999999999999999999986 4456777777777
Q ss_pred ccCCChHHHhhHHHHHHHHHHHhchh-----HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHH
Q 000143 1667 KSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2058)
Q Consensus 1667 ~~d~~~~~R~~aa~~L~~i~~~~g~~-----~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~ 1741 (2058)
+ ++.++.|...+.-..++...+..+ ..+.++|.+...+.+.+..+|.+.......+...+|. ..-++.++|.
T Consensus 365 ~-~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~ 441 (759)
T KOG0211|consen 365 K-DEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPL 441 (759)
T ss_pred c-chhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChh
Confidence 6 666778888887777777666522 2356789999999999999999888777777666663 3456678899
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhccc----chhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccC
Q 000143 1742 ILDGLADENESVRDAALGAGHVLVEHYATT----SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2058)
Q Consensus 1742 Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~ 1817 (2058)
.+..+.|+.+.||....+-+..+....... ..+..+|.+.+...+.+||+|.+.++.+..++
T Consensus 442 ~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la-------------- 507 (759)
T KOG0211|consen 442 LIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLA-------------- 507 (759)
T ss_pred hhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHH--------------
Confidence 999999999999998886554443333222 22448899998888889999999998888774
Q ss_pred CCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHhhCh--hhHHHhHHHHHHHHHHHh
Q 000143 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTP--KTLKEIMPVLMNTLISSL 1894 (2058)
Q Consensus 1818 ~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~-~~D~~~~VR~aA~~~l~~lv~~~~--~~l~~~l~~L~~~l~~~L 1894 (2058)
..+|.+++++.+..++.. ..|....+|.+|...++.++..+| +.....+|.+ +...
T Consensus 508 -----------------~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~----L~~~ 566 (759)
T KOG0211|consen 508 -----------------LQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKL----LAMD 566 (759)
T ss_pred -----------------HhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHH----HHHh
Confidence 234455666666666655 678888999999999999998777 4444555544 4445
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCcch-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHH
Q 000143 1895 ASSSSERRQVAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973 (2058)
Q Consensus 1895 ~~~~~~~R~~A~~~Lg~L~~~lg~~~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~ 1973 (2058)
.++++-.|.+.+.++..++..+|..+ ...++|.+.++..|+.+++|.++++.|..++..+...... ..+.|.+...
T Consensus 567 ~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~---~~v~pll~~L 643 (759)
T KOG0211|consen 567 LQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD---EEVLPLLETL 643 (759)
T ss_pred cCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH---HHHHHHHHHh
Confidence 67789999999999999999999886 5789999999999999999999999999998888765443 5677777777
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHh
Q 000143 1974 LCDSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1974 L~D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
..|++.+||..|..|++.+....
T Consensus 644 ~~d~~~dvr~~a~~a~~~i~l~~ 666 (759)
T KOG0211|consen 644 SSDQELDVRYRAILAFGSIELSR 666 (759)
T ss_pred ccCcccchhHHHHHHHHHHHHHH
Confidence 78999999999999999986543
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-17 Score=231.28 Aligned_cols=686 Identities=16% Similarity=0.163 Sum_probs=461.0
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcc--cc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-c----
Q 000143 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ--DE--APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-I---- 1371 (2058)
Q Consensus 1301 iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~--~~--~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g-~---- 1371 (2058)
.++.|+..|..++..++..++.++..+...-. .. ....++.+++.|... +...|..|+.+|..+..... .
T Consensus 59 aIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~ 137 (2102)
T PLN03200 59 AMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGS 137 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhh
Confidence 67889999998889999887777766653210 00 134567777776544 68899999999999886421 1
Q ss_pred cccchhchHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhcccchhh-H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000143 1372 SSLKKYGIAATLREGLADRN--SAKRREGALLAFECLCEKLGRLFEPY-V-IQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2058)
Q Consensus 1372 ~~l~~~~il~~L~~~l~~~~--~~~~R~~al~al~~L~~~lg~~~~p~-l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l 1447 (2058)
........+|.|...+++.. +...++.+..++..++..-+. +... + ...+|.+...+.++++.++..|..++..+
T Consensus 138 ~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en-~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~L 216 (2102)
T PLN03200 138 KIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDG-FWSATLEAGGVDILVKLLSSGNSDAQANAASLLARL 216 (2102)
T ss_pred hhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccc-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11223477888888887642 223445556777777754332 2222 2 24789999999999999999999988877
Q ss_pred HHhhhh--hhH--HhHHHHHHHhccC-CChHHHHHHHHHHHHHHhhChhh---HhhhhhhHHHHHHHHhcCCC-------
Q 000143 1448 MSQLSA--QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQ---LSQCLPKIVPKLTEVLTDTH------- 1512 (2058)
Q Consensus 1448 ~~~l~~--~~v--~~llp~Ll~~L~~-~~~~~R~~a~~~Lg~la~~~p~~---l~~~L~~Iip~L~~~L~D~~------- 1512 (2058)
+...+. ..+ ...+|.+++.+.+ .+..+|..|+.+|+.++.+.++. +.. ...+|.|++.+..++
T Consensus 217 ass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~--aGgIp~LI~lL~sp~~e~~~~~ 294 (2102)
T PLN03200 217 MMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIAD--AGGIPALINATVAPSKEFMQGE 294 (2102)
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHH--CCCHHHHHHHHhCcchhhhccc
Confidence 755332 222 4578999999975 45689999999999999876543 222 256788888776544
Q ss_pred --HHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH--HHHHHHHhc-cccccCChhh--H--hhHHHHHHH
Q 000143 1513 --PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK--YSLDILLQT-TFVNTVDAPS--L--ALLVPIVHR 1583 (2058)
Q Consensus 1513 --~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr--~al~~L~~~-~f~~~~~~~~--l--~~llp~L~~ 1583 (2058)
...++.|.|+|+.++... ..++|.|-+.+..+..... .++.++... ......+... + ..+.+.|.+
T Consensus 295 ~~~~Lqe~AvwALsNIcgg~-----~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~ 369 (2102)
T PLN03200 295 FAQALQENAMGALANICGGM-----SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVK 369 (2102)
T ss_pred cchHHHHHHHHHHHHHhCCc-----hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHH
Confidence 345899999999998754 4567777666654432221 122222110 0000000000 0 134567777
Q ss_pred hhcCCCHH-HHHHHHHHHHHHHhhhCCCCchhh--hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----Ccc
Q 000143 1584 GLRERSAE-TKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFP 1656 (2058)
Q Consensus 1584 ~L~d~s~~-vr~~A~~~l~~L~~~l~~~~~l~p--yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~ 1656 (2058)
.++.+++. ++..+..++..+. +.+ .+.. +-...++.|..++...+.+++..++.++..++..-.+. .-.
T Consensus 370 Llr~k~p~~vqe~V~eALasl~---gN~-~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ 445 (2102)
T PLN03200 370 LLKPRDTKLVQERIIEALASLY---GNA-YLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGR 445 (2102)
T ss_pred HhCCCCCchhHHHHHHHHHHhc---CCh-HHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 88766544 3555555543322 221 0000 11245677888888888999999999999998542211 123
Q ss_pred chHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHH----HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHH
Q 000143 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1657 ~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l----~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
..+|.|++.|.++. ...+..++..++.+..+...... ...+|.+.+.+.+++..+|+.+++++++++.. ..+..
T Consensus 446 ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir 523 (2102)
T PLN03200 446 EGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIR 523 (2102)
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHH
Confidence 57899999998654 45788888888888653322211 45789999999999999999999999999873 43444
Q ss_pred HhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCc
Q 000143 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810 (2058)
Q Consensus 1733 pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~ 1810 (2058)
..+ ..++|+++..|.+.+..+++.+++++..+....... .++.+...+..++..++..+++.++.++...
T Consensus 524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~----~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~---- 595 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA----TISQLTALLLGDLPESKVHVLDVLGHVLSVA---- 595 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh----HHHHHHHHhcCCChhHHHHHHHHHHHHHhhc----
Confidence 445 258999999999999999999999999887654333 3466777777777888888888888875211
Q ss_pred ccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHH-hHHHHHHH
Q 000143 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKE-IMPVLMNT 1889 (2058)
Q Consensus 1811 ~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~-~l~~L~~~ 1889 (2058)
+.++ . ...... .+..++.|...+...+..+++.|..++..++.+.+..... +....++.
T Consensus 596 --------~~~d-~-----~~~g~~------~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpP 655 (2102)
T PLN03200 596 --------SLED-L-----VREGSA------ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINP 655 (2102)
T ss_pred --------chhH-H-----HHHhhh------ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHH
Confidence 0000 0 000000 0123455555555667888999999998888765543322 23345666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhCcc----h-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH-
Q 000143 1890 LISSLASSSSERRQVAGRALGELVRKLGER----V-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM- 1963 (2058)
Q Consensus 1890 l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~----~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~- 1963 (2058)
++..+.+.+.+++..++.+|+.+.....++ + -...+|.|.+.+++.+.+++..++.+|..++...... ....
T Consensus 656 LV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~--~ei~~ 733 (2102)
T PLN03200 656 CIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA--AEALA 733 (2102)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH--HHHHh
Confidence 677789999999999999999999743322 1 2457889999999999999999999999887654221 2222
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChh-------hHHHHHHHHHHhcCCCc--chHH--HHHHHHHHHhh
Q 000143 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-------AIDEIVPTLLHALEDDQ--TSDT--ALDGLKQILSV 2031 (2058)
Q Consensus 1964 ~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~-------~~~~ilp~Ll~~L~~~~--~~~~--al~aL~~i~~~ 2031 (2058)
...++.|.+.+.+.++.+|++|+.++..+++..... ....++.+|+..|...+ ...+ ++.+|..+.+.
T Consensus 734 ~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 734 EDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred cCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 566899999999999999999999999999765422 22357788999998644 3344 88888888875
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-17 Score=229.69 Aligned_cols=721 Identities=13% Similarity=0.106 Sum_probs=485.1
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcc--hHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcc
Q 000143 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK--VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ 1332 (2058)
Q Consensus 1255 Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~--i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~ 1332 (2058)
.+|.+...|... ...+|+.++..|..++.+- ..... ....++.|+..|++.+.+.++.++.+|..+.....
T Consensus 59 aIP~LV~lL~sg------~~~vk~nAaaaL~nLS~~e-~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~ 131 (2102)
T PLN03200 59 AMPLLVSLLRSG------TLGAKVNAAAVLGVLCKEE-DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGL 131 (2102)
T ss_pred cHHHHHHHHcCC------CHHHHHHHHHHHHHHhcCH-HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcc
Confidence 456666666541 1257888888888888641 11100 13467788899999899999999999888765321
Q ss_pred -cc-------hHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhhCcc--ccchhchHHHHHHHHhCCCCHHHHHHHH
Q 000143 1333 -DE-------APTLVSRLLDQLMKSD--KYGERRGAAFGLAGVVKGFGIS--SLKKYGIAATLREGLADRNSAKRREGAL 1400 (2058)
Q Consensus 1333 -~~-------~~~~v~~Ll~~L~~~~--~~~vR~~Aa~~L~~l~~~~g~~--~l~~~~il~~L~~~l~~~~~~~~R~~al 1400 (2058)
+. ....++.|+..+.... +..++..+..+|..+...-+.. .+-....+|.+...+.+. ++..+..|.
T Consensus 132 ~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa 210 (2102)
T PLN03200 132 SDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAA 210 (2102)
T ss_pred hhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHH
Confidence 11 1345777777776543 2334555667777777644322 112346888999999875 788888888
Q ss_pred HHHHHHHHHhcccchhhH-HHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCCh--
Q 000143 1401 LAFECLCEKLGRLFEPYV-IQMLPLLLVAFSD-QVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-- 1472 (2058)
Q Consensus 1401 ~al~~L~~~lg~~~~p~l-~~llp~Ll~~l~D-~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~-- 1472 (2058)
.++..++...++.....+ ...+|.++..+++ +++.+|+.|.+++..++...+.. .+ ...+|.+++.+..++.
T Consensus 211 ~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~ 290 (2102)
T PLN03200 211 SLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEF 290 (2102)
T ss_pred HHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhh
Confidence 888777755332111112 2468999999965 56799999999999998653332 12 3467888887764432
Q ss_pred -------HHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhcCchh--H-----Hh
Q 000143 1473 -------RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNPE--I-----AS 1537 (2058)
Q Consensus 1473 -------~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~~--i-----~~ 1537 (2058)
..+..|+.+|++++.+. +.++|.|.+.++.. +..+...+++++..+...+.++. . ..
T Consensus 291 ~~~~~~~~Lqe~AvwALsNIcgg~--------~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~ 362 (2102)
T PLN03200 291 MQGEFAQALQENAMGALANICGGM--------SALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTV 362 (2102)
T ss_pred hccccchHHHHHHHHHHHHHhCCc--------hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccc
Confidence 34788999999999764 45677777776543 45556677888888866555321 1 23
Q ss_pred HHHHHHhccCCCChhH-----HHHHHHHHh-ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000143 1538 LVPTLLMGLTDPNDHT-----KYSLDILLQ-TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2058)
Q Consensus 1538 lvp~Ll~~l~d~~~~v-----r~al~~L~~-~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~ 1611 (2058)
+.+.|.+.+..+++.. .+|+..+.. ......+ ......+.|...+...+.+++..++..+.+++.. + .
T Consensus 363 v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L---~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~--~-~ 436 (2102)
T PLN03200 363 IEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKL---NHAEAKKVLVGLITMATADVQEELIRALSSLCCG--K-G 436 (2102)
T ss_pred cHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHH---HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCC--C-H
Confidence 4577888887665432 244433221 0000000 0122456677777777889999999999998852 2 1
Q ss_pred chhhhH--hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHH
Q 000143 1612 DMIPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2058)
Q Consensus 1612 ~l~pyl--~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i 1685 (2058)
+....+ ...+|.|...+.+++..++..++.+++.++....+. .-...+|.|.+.|.+. +...+..++++|+.+
T Consensus 437 e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NL 515 (2102)
T PLN03200 437 GLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNL 515 (2102)
T ss_pred HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 222211 246899999999999999999999999998633222 1246899999999854 556899999999998
Q ss_pred HHHhchh---HH--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHH
Q 000143 1686 LAALGTV---YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGA 1760 (2058)
Q Consensus 1686 ~~~~g~~---~l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~a 1760 (2058)
+.. ..+ .+ ...+|.+++.+++.++..|+.+++++.++...... ..++++...+..+++.++..++++
T Consensus 516 a~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-------~~I~~Lv~LLlsdd~~~~~~aL~v 587 (2102)
T PLN03200 516 CCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-------ATISQLTALLLGDLPESKVHVLDV 587 (2102)
T ss_pred hCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-------hHHHHHHHHhcCCChhHHHHHHHH
Confidence 753 221 12 35788999999999999999999999998664322 244777788888888899999999
Q ss_pred HHHHHHHhcccc-------hhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHH
Q 000143 1761 GHVLVEHYATTS-------LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAI 1833 (2058)
Q Consensus 1761 l~~lv~~~~~~~-------l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l 1833 (2058)
++.++....... ....+|.|.+.+.+.+.+++..|+..+..+... . ......+
T Consensus 588 LgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~-------------~-------~d~~~av 647 (2102)
T PLN03200 588 LGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS-------------R-------QDLCESL 647 (2102)
T ss_pred HHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-------------C-------hHHHHHH
Confidence 888765333221 124789999999999999999999999887410 0 0011111
Q ss_pred HHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh-HHHhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1834 IEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-LKEIMP-VLMNTLISSLASSSSERRQVAGRALGE 1911 (2058)
Q Consensus 1834 ~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~-l~~~l~-~L~~~l~~~L~~~~~~~R~~A~~~Lg~ 1911 (2058)
+ ....+..+...+......+++.+...+..+....... ...++. ..++.+++.+.+.+.+++..|+.+|+.
T Consensus 648 v-------~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALan 720 (2102)
T PLN03200 648 A-------TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALAN 720 (2102)
T ss_pred H-------HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 1 1123455555566667778888888888887533222 122222 356667777899999999999999999
Q ss_pred HHHHhCcc--h-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh-hHhHH--hhHHHHHHHHhcCCCHHHHHH-
Q 000143 1912 LVRKLGER--V-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ-LLSFM--DELIPTIRTALCDSILEVRES- 1984 (2058)
Q Consensus 1912 L~~~lg~~--~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~-l~~~~--~~ll~~L~~~L~D~d~~VR~~- 1984 (2058)
+++..... + -...+|.|.+.+.+.++..|.+++.+|..+..+.+.++ +..+. ...+..|...|...|.+.-..
T Consensus 721 Ll~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~ 800 (2102)
T PLN03200 721 LLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATS 800 (2102)
T ss_pred HHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHH
Confidence 99864322 1 24678999999999999999999999999998877554 43443 345677778887666666665
Q ss_pred -HHHHHHHHHHHhCh-----hhH------HHHHHHHHHhcCC--CcchHHHHHHHHHHHhhcC
Q 000143 1985 -AGLAFSTLFKSAGM-----QAI------DEIVPTLLHALED--DQTSDTALDGLKQILSVRT 2033 (2058)
Q Consensus 1985 -Aa~a~~~l~~~~g~-----~~~------~~ilp~Ll~~L~~--~~~~~~al~aL~~i~~~~~ 2033 (2058)
|..+++.+.+..+. +.. ..-+.+|.++|.. |...+.|++-|..+|+.+|
T Consensus 801 ~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~ 863 (2102)
T PLN03200 801 EALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQP 863 (2102)
T ss_pred HHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccCh
Confidence 89999999875321 111 1345566666643 4567889999999888764
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-18 Score=209.84 Aligned_cols=450 Identities=22% Similarity=0.333 Sum_probs=332.4
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCC
Q 000143 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588 (2058)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~ 1588 (2058)
.|+++.||..-..+.......-+++....+.|...+.++.. .
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~~~l~~~--------------------------------------~ 68 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFEQRLNSL--------------------------------------H 68 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc--------------------------------------h
Confidence 67777888777776666554444444444444444443321 1
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhccc
Q 000143 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2058)
Q Consensus 1589 s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~ 1668 (2058)
+..+|....-..|.++..+ ...|..+ ..++..+.+.+..|.+.+|.+...|+..+........-..+.+.+.+.+.
T Consensus 69 ~~~~~~~~~v~~~~~a~~~-~~~d~~~--~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~- 144 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHL-QIVDPRP--ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLT- 144 (569)
T ss_pred hHHHhhhhHHHHHHHHHhc-cccCcch--hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhc-
Confidence 2233433333344444432 2233333 35788888889999999999999999998876655544566676767776
Q ss_pred CCChHHHhhHHHHHHHHHHHhchhHH--HHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHh
Q 000143 1669 DNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDG 1745 (2058)
Q Consensus 1669 d~~~~~R~~aa~~L~~i~~~~g~~~l--~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~ 1745 (2058)
......|.+++.+++.+..+.|.+.+ ..++..+.....+. +...|++++.++......+|..|.||+-.++|.++..
T Consensus 145 ~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~ 224 (569)
T KOG1242|consen 145 STKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTN 224 (569)
T ss_pred cccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHH
Confidence 45566899999999999999888755 45777888888776 4455667888888899999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcc
Q 000143 1746 LADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825 (2058)
Q Consensus 1746 L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~ 1825 (2058)
+.|....||..+..+.+.++..+...+++.++|.+...+.+..|+...++++++|.+.++..
T Consensus 225 ~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap------------------ 286 (569)
T KOG1242|consen 225 FGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAP------------------ 286 (569)
T ss_pred hhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhch------------------
Confidence 99999999999999999999999999999999999988888899999999999998865421
Q ss_pred hHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHhHHHHHHHHHHHhcCCCHHHHHH
Q 000143 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQV 1904 (2058)
Q Consensus 1826 ~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~-~~l~~~l~~L~~~l~~~L~~~~~~~R~~ 1904 (2058)
..+. .+...+++.+...+.|+...||+++..++..++.... ..+..+ .|.++.+++++...+..
T Consensus 287 -----~qLs-----~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~----ip~Lld~l~dp~~~~~e- 351 (569)
T KOG1242|consen 287 -----KQLS-----LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKI----IPTLLDALADPSCYTPE- 351 (569)
T ss_pred -----HHHH-----HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHH----HHHHHHHhcCcccchHH-
Confidence 1111 1233566667777889999999999998887765322 234444 45556667888744322
Q ss_pred HHHHHH--HHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhh-ChhhhHhHHhhHHHHHHHHhcCCCHHH
Q 000143 1905 AGRALG--ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALCDSILEV 1981 (2058)
Q Consensus 1905 A~~~Lg--~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~-~~~~l~~~~~~ll~~L~~~L~D~d~~V 1981 (2058)
+...|+ .++..+.+..+.-++|.|.+++++++...+..++..++.+..-. .+..+.+|++.++|.+...+.|+.|+|
T Consensus 352 ~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEv 431 (569)
T KOG1242|consen 352 CLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEV 431 (569)
T ss_pred HHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhH
Confidence 222222 22333334456788999999999998887777777788777666 566788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhhcC
Q 000143 1982 RESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ---TSDTALDGLKQILSVRT 2033 (2058)
Q Consensus 1982 R~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~~---~~~~al~aL~~i~~~~~ 2033 (2058)
|..|+.|+|.+.+..|....+..+|.+.+.+.++. .+..+..+|.++++...
T Consensus 432 R~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~ 486 (569)
T KOG1242|consen 432 RAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLG 486 (569)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhccc
Confidence 99999999999999999888999999999997643 35556666666665443
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.7e-15 Score=176.69 Aligned_cols=610 Identities=14% Similarity=0.159 Sum_probs=378.9
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCC-------
Q 000143 1139 LSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK------- 1211 (2058)
Q Consensus 1139 l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~------- 1211 (2058)
+-++|+.+|..+..-|-.+...+ |...+.-+.+.+-. .....+.|-.++.+|++-...-++.
T Consensus 14 vLspD~n~rl~aE~ql~~l~~~d---F~qf~~ll~qvl~d--------~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~q 82 (858)
T COG5215 14 VLSPDPNARLRAEAQLLELQSGD---FEQFISLLVQVLCD--------LNSNDQLRMVAGLILKNSLHANDPELQKGCSQ 82 (858)
T ss_pred cCCCCCCccccHHHHHHHhcccc---HHHHHHHHHHHHhc--------cCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence 45678888888776666665433 33322222222111 1233468888888888754322211
Q ss_pred -------ChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-hCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHH
Q 000143 1212 -------DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDK-HGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283 (2058)
Q Consensus 1212 -------~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~-~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~ 1283 (2058)
....-++-+..++|+.+++..-..+.....++.+- .+...|+.+|..+.....+ +++ ..++..++..
T Consensus 83 rW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~----eqp-~~~k~~sl~~ 157 (858)
T COG5215 83 RWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGD----EQP-VSGKCESLGI 157 (858)
T ss_pred hhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccc----cCc-hHhHHHHHHH
Confidence 01122333334678888887776666554444432 2334688888776665332 222 3566666666
Q ss_pred HHHHHhHhccCCcc-h----HHH-HHHHHhhhCC-CCHHHHHHHHHhhHhhHhhc-----ccchHHHHHHHHHHHhcCCC
Q 000143 1284 TGALAKHLAKDDPK-V----HAV-VDKLLDVLNT-PSEAVQRAVSSCLSPLMQSM-----QDEAPTLVSRLLDQLMKSDK 1351 (2058)
Q Consensus 1284 Lg~La~~l~~~~p~-i----~~i-v~~Ll~~L~~-~~~~V~~av~~~L~~l~~~~-----~~~~~~~v~~Ll~~L~~~~~ 1351 (2058)
+|..|+ +.+|. + ..+ +......+++ ++..||.++.+||..-...+ .+.-..++-.......++++
T Consensus 158 ~gy~ce---s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d 234 (858)
T COG5215 158 CGYHCE---SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND 234 (858)
T ss_pred HHHHhh---ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc
Confidence 666554 44441 1 112 2222334443 56788888888887622222 12234455555555566778
Q ss_pred HHHHHHHHHHHHHHHhhhCccccc---hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-cccc-hh----------
Q 000143 1352 YGERRGAAFGLAGVVKGFGISSLK---KYGIAATLREGLADRNSAKRREGALLAFECLCEKL-GRLF-EP---------- 1416 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g~~~l~---~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~l-g~~~-~p---------- 1416 (2058)
..+..+|..|+..+..-. .+.++ +..+.....+.+.+. +.++.-.++..+.++|+.- .-.+ ..
T Consensus 235 ~e~q~aafgCl~kim~Ly-Y~fm~~ymE~aL~alt~~~mks~-nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~ 312 (858)
T COG5215 235 EELQHAAFGCLNKIMMLY-YKFMQSYMENALAALTGRFMKSQ-NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNH 312 (858)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhc
Confidence 888988989998887532 11111 001112222334455 6667777777777777641 1001 01
Q ss_pred -----hHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHH
Q 000143 1417 -----YVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484 (2058)
Q Consensus 1417 -----~l~~llp~Ll~~l~-------D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~ 1484 (2058)
-+..++|.+++.+. ++++.+..+|..|+..++...+...++.++..+.+.+++++|+.|.+++.++|.
T Consensus 313 ~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 313 GFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhh
Confidence 14568899888764 246789999999999999888888888899999999999999999999999999
Q ss_pred HHhhC-hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---h--hHHhHHHHHHhccCCCChhHHH---
Q 000143 1485 MAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---P--EIASLVPTLLMGLTDPNDHTKY--- 1555 (2058)
Q Consensus 1485 la~~~-p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~--~i~~lvp~Ll~~l~d~~~~vr~--- 1555 (2058)
+..+. ...+.++.++.+|.+....+|+.-.|+..++||++++++.+.. | ++...+...+..+.|-....-.
T Consensus 393 vm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw 472 (858)
T COG5215 393 VMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMDCPFRSINCSW 472 (858)
T ss_pred hhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhccchHHhhhHH
Confidence 98774 3457889999999999999999999999999999999987652 2 3333344444444443221111
Q ss_pred HHHHHHh-----ccccccCChhhHhhHHHHHHHh--hcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh----HhhhhHHH
Q 000143 1556 SLDILLQ-----TTFVNTVDAPSLALLVPIVHRG--LRERSAETKKKAAQIVGNMCSLVTEPKDMIPY----IGLLLPEV 1624 (2058)
Q Consensus 1556 al~~L~~-----~~f~~~~~~~~l~~llp~L~~~--L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py----l~~ll~~L 1624 (2058)
....+.. +..+...-.+....++..|..+ +.+.....|..+..++|.|..... +.+.+. ++-++..+
T Consensus 473 ~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~--d~V~~~~a~~~~~~~~kl 550 (858)
T COG5215 473 RKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICP--DAVSDILAGFYDYTSKKL 550 (858)
T ss_pred HHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHH
Confidence 1111111 1111111112122233333322 123445678888888998877532 233322 22222222
Q ss_pred HHhh-------C--C--CCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhc
Q 000143 1625 KKVL-------V--D--PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690 (2058)
Q Consensus 1625 ~~~l-------~--d--~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g 1690 (2058)
-+.+ . | ...++...-...+.++....+.+ .-++++..+++.|.+.+....-.....+++.+...+|
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~ 630 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLE 630 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHH
Confidence 2221 1 1 12345666666777777777764 2345888888888765333333445667777777777
Q ss_pred hh---HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCC--HHHHHHHHHHHHHHH
Q 000143 1691 TV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN--ESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1691 ~~---~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~--~~VR~~a~~al~~lv 1765 (2058)
.. |.+.+.|.+...++..+..|-..++.+.|.++..+|.+|.+|...++..+.+.+..+. .+++-..+..++.|.
T Consensus 631 e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 631 ERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred HHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHH
Confidence 64 6788999999999888999999999999999999999999999999999999998764 467778888888887
Q ss_pred HHhccc
Q 000143 1766 EHYATT 1771 (2058)
Q Consensus 1766 ~~~~~~ 1771 (2058)
...+..
T Consensus 711 laiga~ 716 (858)
T COG5215 711 LAIGAN 716 (858)
T ss_pred HHHhhh
Confidence 766654
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-16 Score=202.53 Aligned_cols=530 Identities=18% Similarity=0.217 Sum_probs=391.7
Q ss_pred hhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhC-CCCHHHHHHHHHhhHhhHhh
Q 000143 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN-TPSEAVQRAVSSCLSPLMQS 1330 (2058)
Q Consensus 1252 ~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~-~~~~~V~~av~~~L~~l~~~ 1330 (2058)
...++|.+.+.+ . ..+.+...+..-+|.+..+.. .|++..++...++.+. +....|+..+.+++......
T Consensus 119 r~~lipf~~e~~-~------~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~ 189 (759)
T KOG0211|consen 119 RLELIPFLTEAE-D------DEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVG 189 (759)
T ss_pred hhhhhhHHHHhc-c------chhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 567889888875 2 234678888888888776432 2444444444444443 33456788888887776665
Q ss_pred ccc-chHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000143 1331 MQD-EAPTLVSRLLDQLMKSDKYGE-RRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 1408 (2058)
Q Consensus 1331 ~~~-~~~~~v~~Ll~~L~~~~~~~v-R~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~ 1408 (2058)
..+ ...+.+-.++..+..+ +|-. |..++..++.......++.++ ..+.+...+..+++ ++.+|.++..-++.++.
T Consensus 190 ~~~~~~~~~lv~l~~~l~~~-d~~~sr~sacglf~~~~~~~~~~~vk-~elr~~~~~lc~d~-~~~Vr~~~a~~l~~~a~ 266 (759)
T KOG0211|consen 190 LPKEKLREHLVPLLKRLATG-DWFQSRLSACGLFGKLYVSLPDDAVK-RELRPIVQSLCQDD-TPMVRRAVASNLGNIAK 266 (759)
T ss_pred cChHHHHHHHHHHHHHccch-hhhhcchhhhhhhHHhccCCChHHHH-HHHHHHHHhhcccc-chhhHHHHHhhhHHHHH
Confidence 533 2346666677777666 3444 444444444444444333332 35566666666666 89999999888888888
Q ss_pred HhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh-hH-HhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1409 ~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~-~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
..+. +.-...++|.+.....|+...||.+|.+++..+...+... .+ +.+.+.+++..+|.+|++|.........+.
T Consensus 267 ~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 267 VLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELS 344 (759)
T ss_pred HHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHH
Confidence 7775 3334567888889999999999999999999999888776 44 788999999999999999998877777766
Q ss_pred hhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---hh--HHhHHHHHHhccCCCChhHHHHHHHHH
Q 000143 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PE--IASLVPTLLMGLTDPNDHTKYSLDILL 1561 (2058)
Q Consensus 1487 ~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~--i~~lvp~Ll~~l~d~~~~vr~al~~L~ 1561 (2058)
...+.+ ..-+..++.....++|...++|.++..-...++..... +. .+.++|.+.....|.+.++|.+.....
T Consensus 345 ~~~~~~--~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~ 422 (759)
T KOG0211|consen 345 SAVGPS--ATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVI 422 (759)
T ss_pred HHhccc--cCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccc
Confidence 554442 23346778888899999999999999999999887763 22 256789999999999999986554332
Q ss_pred h-ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHH
Q 000143 1562 Q-TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640 (2058)
Q Consensus 1562 ~-~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~ 1640 (2058)
. ....-. .......+.|.+...++|..+.||......+..+-. +.+.....-+.+.++|.+..+..|..|++|.+..
T Consensus 423 ~~~~p~~~-k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~-v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail 500 (759)
T KOG0211|consen 423 TGLSPILP-KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE-VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAIL 500 (759)
T ss_pred cccCccCC-cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHh-ccCcccchhhhhhhhhhhhhhccchhHHHHHHHH
Confidence 1 100001 123456688999999999999999886655544333 3444455667788999999999999999999999
Q ss_pred HHHHHHHHhhcccCccchHH-HHHhhcccCCChHHHhhHHHHHHHHHHHhchh-HHHHhhHHHHHhhccCChhHHHHHHH
Q 000143 1641 RAIGSLIRGMGEENFPDLVS-WLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQRASVRDGYLT 1718 (2058)
Q Consensus 1641 ~aLg~l~~~lg~~~~~~llp-~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~-~l~~llp~Ll~~l~~~~~~vR~~al~ 1718 (2058)
+.+..++...|..++++.+. .++..+. +.....|.+++..+..++..+|.+ ....++|.++....++++.+|...+.
T Consensus 501 ~~ip~la~q~~~~~~~~~~~~l~~~~l~-d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~ 579 (759)
T KOG0211|consen 501 EYIPQLALQLGVEFFDEKLAELLRTWLP-DHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLF 579 (759)
T ss_pred HHHHHHHHhhhhHHhhHHHHHHHHhhhh-hhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHH
Confidence 99999999998776654433 3333333 555679999999999999999966 45788899998888889999999999
Q ss_pred HHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchh-chHHhHhhhcCCCCHHHHHHHHH
Q 000143 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLP-LLLPAVEDGIFNDNWRIRQSSVE 1797 (2058)
Q Consensus 1719 ~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~-~llp~L~~~l~d~~~~vR~sav~ 1797 (2058)
++..++..+|.++ +...++|.+..+..|++++||-++++.+..++........+ .++|.++....|.+..+|..+..
T Consensus 580 si~~la~v~g~ei--~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~ 657 (759)
T KOG0211|consen 580 SIHELAEVLGQEI--TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAIL 657 (759)
T ss_pred HHHHHHHHhccHH--HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHH
Confidence 9999999999987 78889999999999999999999999999998887766554 47788777777776666666666
Q ss_pred HHHHH
Q 000143 1798 LLGDL 1802 (2058)
Q Consensus 1798 ll~~L 1802 (2058)
..+.+
T Consensus 658 a~~~i 662 (759)
T KOG0211|consen 658 AFGSI 662 (759)
T ss_pred HHHHH
Confidence 66655
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-13 Score=178.26 Aligned_cols=461 Identities=17% Similarity=0.233 Sum_probs=319.2
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~ 1654 (2058)
..+...+.+++.+.++..|...|-.+-.+...++......-..+.+...+...+.|.+.-++..|.+.+|.+.+--+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 34566677788889999999888777777666665566666778888999999999999999999999998776444444
Q ss_pred ccchHHHHHhhcccCCChHH---------------------HhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccC-ChhH
Q 000143 1655 FPDLVSWLLDALKSDNSNVE---------------------RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RASV 1712 (2058)
Q Consensus 1655 ~~~llp~L~~~L~~d~~~~~---------------------R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~-~~~v 1712 (2058)
-..++..|+++|........ ...+-+-|..++..+|+. +++-.+++..++. .|.-
T Consensus 897 k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qP---dLVYKFM~LAnh~A~wnS 973 (1702)
T KOG0915|consen 897 KKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQP---DLVYKFMQLANHNATWNS 973 (1702)
T ss_pred HHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCCh---HHHHHHHHHhhhhchhhc
Confidence 45678888887753211100 011222344444455543 4444555555554 7899
Q ss_pred HHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH---hcccchhchHHhHhhhcCCCCH
Q 000143 1713 RDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH---YATTSLPLLLPAVEDGIFNDNW 1789 (2058)
Q Consensus 1713 R~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~---~~~~~l~~llp~L~~~l~d~~~ 1789 (2058)
|.++...|+.++...|+..+||+.+++|.+...=-|++..|+.+.....+.++.. .-+.+...++..|...+.+..|
T Consensus 974 k~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kew 1053 (1702)
T KOG0915|consen 974 KKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEW 1053 (1702)
T ss_pred ccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhH
Confidence 9999999999999999999999999999999999999999999888888777643 1223455688888888999999
Q ss_pred HHHHHHHHHHHHHHHHhhCC--ccc------ccccCCCCCCCcchHHHHHHHHHHh---------------ChhhHHHHH
Q 000143 1790 RIRQSSVELLGDLLFKVAGT--SGK------ALLEGGSDDEGASTEAHGRAIIEVL---------------GRDKRNEVL 1846 (2058)
Q Consensus 1790 ~vR~sav~ll~~Ll~~~~g~--~~k------~~~~~~~e~~~~~~e~~~~~l~~~L---------------g~~~~~~vL 1846 (2058)
|||.+++-.+.+|+..-... ..+ +.+...+ |-..++..++....+.+ |.+..+.+|
T Consensus 1054 RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmD-DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iL 1132 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMD-DIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIIL 1132 (1702)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHH
Confidence 99999999999997421000 000 0000000 00001111111111111 233444555
Q ss_pred HHHHHh-hcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCH-------------------HHHHHH-
Q 000143 1847 AALYMV-RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS-------------------ERRQVA- 1905 (2058)
Q Consensus 1847 ~~L~~~-~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~-------------------~~R~~A- 1905 (2058)
+.+... .......||..++.++-.++...|..+++++|.+++.++.....-++ ..|..+
T Consensus 1133 PfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~a 1212 (1702)
T KOG0915|consen 1133 PFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAA 1212 (1702)
T ss_pred HHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence 555432 33567899999999999999999999999999999998876543221 234333
Q ss_pred -----HHHHHHHHHHhCcchhhchHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCH
Q 000143 1906 -----GRALGELVRKLGERVLPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2058)
Q Consensus 1906 -----~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~ 1979 (2058)
.++++.++......++.+++|.+.+.+... .-..|.+++..+.-+...++.+ ..||.+.++..+...+.|.++
T Consensus 1213 ksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~e-mtP~sgKll~al~~g~~dRNe 1291 (1702)
T KOG0915|consen 1213 KSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSE-MTPYSGKLLRALFPGAKDRNE 1291 (1702)
T ss_pred cCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccc-cCcchhHHHHHHhhccccccH
Confidence 357777777777777889999998887655 3567888888777777888765 689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCC--cchHHHHH-------HHHHHHhhcCCccchhh
Q 000143 1980 EVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALD-------GLKQILSVRTTAVLPHI 2040 (2058)
Q Consensus 1980 ~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~--~~~~~al~-------aL~~i~~~~~~~~lp~l 2040 (2058)
.||.+.+.|+|.+.+...+......+..++..+-.+ ..+..++. --.+++..+.+.++|..
T Consensus 1292 sv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLi 1361 (1702)
T KOG0915|consen 1292 SVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLI 1361 (1702)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHH
Confidence 999999999999998876655555555555554321 11122222 22566677777888854
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.5e-12 Score=148.25 Aligned_cols=424 Identities=17% Similarity=0.225 Sum_probs=295.5
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----hHHhHHHHHHH-hccCCChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1425 Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~----~v~~llp~Ll~-~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
+.+.++|.--+-|++|+--+..+++.+-.. .++.++..+.. ...+.+-..|++++..+.+++-+.+..-.+|+..
T Consensus 5 i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~ 84 (675)
T KOG0212|consen 5 IARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEK 84 (675)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHH
Confidence 345667776777888888888877765442 35677775544 4456666677788888888887766665569999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHHHhccCCCChhHHHHH---HHHHhccccccCChhh
Q 000143 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSL---DILLQTTFVNTVDAPS 1573 (2058)
Q Consensus 1500 Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~vr~al---~~L~~~~f~~~~~~~~ 1573 (2058)
++|.++.+++|++.+||.-||+++-.++++.+. .++..+...+.+...|++..+|.+. +-+.+..-......-+
T Consensus 85 iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFs 164 (675)
T KOG0212|consen 85 IVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFS 164 (675)
T ss_pred hhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccC
Confidence 999999999999999999999999999998875 3678999999999999998887443 3333311111111345
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1574 l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
++.++|.+...+-..++.+|......+..+-.. .+-++..|++.++++|.+.+.|+..+||..+-.+++.+...+..+
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~--P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~ 242 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV--PDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS 242 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC--CcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 778999999988888999999877666665542 345778899999999999999999999999888888776554322
Q ss_pred CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHH
Q 000143 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2058)
Q Consensus 1654 ~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~p 1733 (2058)
+... ..++.++.+...+.++++.++..++.-+..+....|.++.+
T Consensus 243 ----------------P~s~-------------------d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~ 287 (675)
T KOG0212|consen 243 ----------------PSSM-------------------DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLL 287 (675)
T ss_pred ----------------cccc-------------------CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhh
Confidence 1110 11233344444555666666666666666677778888899
Q ss_pred hHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhccc----chh--chHHhHhhhcCCCCHHHHHHHHHHHHHHHHHh
Q 000143 1734 YLQQVLPAILDGLADENE-SVRDAALGAGHVLVEHYATT----SLP--LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~-~VR~~a~~al~~lv~~~~~~----~l~--~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~ 1806 (2058)
|++.++..++.++.+.++ .+++.+...-+.+...++.. .++ .++..+.+.+.++....|.+++..+..+..+.
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~ 367 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA 367 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC
Confidence 999999999999998776 47766655444444433322 233 58888889999999999999999998875433
Q ss_pred hCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHhHHH
Q 000143 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPV 1885 (2058)
Q Consensus 1807 ~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~-~~l~~~l~~ 1885 (2058)
.|.. . -+.+.+...+...++|.+..|-.-++.++..++.... ..+.+++..
T Consensus 368 p~ql-----------------------~-----~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~s 419 (675)
T KOG0212|consen 368 PGQL-----------------------L-----VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLS 419 (675)
T ss_pred cchh-----------------------h-----hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 2211 0 1123455666777888888888888888888885322 255566666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000143 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLG 1917 (2058)
Q Consensus 1886 L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg 1917 (2058)
++++.. .+.--.+.-+.-.+-.+|..+.
T Consensus 420 LL~~f~----e~~~~l~~Rg~lIIRqlC~lL~ 447 (675)
T KOG0212|consen 420 LLEMFK----EDTKLLEVRGNLIIRQLCLLLN 447 (675)
T ss_pred HHHHHh----hhhHHHHhhhhHHHHHHHHHhC
Confidence 665543 2333333334444455555554
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-11 Score=145.66 Aligned_cols=421 Identities=16% Similarity=0.187 Sum_probs=299.4
Q ss_pred hhhCCCCHHHHHHHHHhhHhhHhhc-c----cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccch-hchH
Q 000143 1307 DVLNTPSEAVQRAVSSCLSPLMQSM-Q----DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK-YGIA 1380 (2058)
Q Consensus 1307 ~~L~~~~~~V~~av~~~L~~l~~~~-~----~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~-~~il 1380 (2058)
..|.|..-+-|++++--+..+++.+ . ++....+..+......+.+...|+|+..|++...-++|.+.... ..++
T Consensus 7 r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv 86 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIV 86 (675)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhh
Confidence 3444444445555554455555433 1 12345555566666666667778899999999999999887541 1566
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-----hh
Q 000143 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-----QG 1455 (2058)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-----~~ 1455 (2058)
+-+...+.|. +.++|--|+..+-.++......+-+|...+...+.+...|.+..||..| +.++++.+.... ..
T Consensus 87 ~Pv~~cf~D~-d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~~tFs 164 (675)
T KOG0212|consen 87 PPVLNCFSDQ-DSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESASTFS 164 (675)
T ss_pred HHHHHhccCc-cceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccccccC
Confidence 6677777777 8899999999999999998888899999999999999999999999866 455555544332 23
Q ss_pred HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH
Q 000143 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI 1535 (2058)
Q Consensus 1456 v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i 1535 (2058)
++.++|.+-+.+...++.+|...+.-+..+-...+-.+-.|+|.+++.|++.|.|++++||.-+-.+++.|-..+++
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s--- 241 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRS--- 241 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhc---
Confidence 58899999999999999999887777766655555679999999999999999999999999999999888765542
Q ss_pred HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000143 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2058)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p 1615 (2058)
+|.. .. ...+++++..-+....+.++..|...+..+... .+.++.+
T Consensus 242 ------------~P~s--------------~d------~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i--~g~~~l~ 287 (675)
T KOG0212|consen 242 ------------SPSS--------------MD------YDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI--PGRDLLL 287 (675)
T ss_pred ------------Cccc--------------cC------cccchhhccccccCCcHHHHHHHHHHHHHHhcC--CCcchhh
Confidence 2210 00 112344455555666677888887777777764 4568899
Q ss_pred hHhhhhHHHHHhhCCCCH-HHHHHHHHHHHHHHHhhccc------CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHH
Q 000143 1616 YIGLLLPEVKKVLVDPIP-EVRSVAARAIGSLIRGMGEE------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2058)
Q Consensus 1616 yl~~ll~~L~~~l~d~~~-~vR~~a~~aLg~l~~~lg~~------~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~ 1688 (2058)
|+..++..+..++.|... ..+..+...-+.+...++++ .+..++..+...+.++ ..+.|..+..++.-+-..
T Consensus 288 ~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~ 366 (675)
T KOG0212|consen 288 YLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHK 366 (675)
T ss_pred hhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhh
Confidence 999999999999988766 46766666555555544433 2347888888888754 445888899888888777
Q ss_pred hchh---HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000143 1689 LGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1689 ~g~~---~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv 1765 (2058)
.+.+ +.+.+.+.++..+.|++..|-..++..+..++..-.. +.+-+++..++..+..+..-++..+.-.+++++
T Consensus 367 ~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~---~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 367 APGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS---PNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred CcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc---ccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 7766 4478899999999999988888888888888775443 133344444555555444444444444555555
Q ss_pred HHhcc
Q 000143 1766 EHYAT 1770 (2058)
Q Consensus 1766 ~~~~~ 1770 (2058)
....+
T Consensus 444 ~lL~a 448 (675)
T KOG0212|consen 444 LLLNA 448 (675)
T ss_pred HHhCH
Confidence 44433
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-10 Score=152.80 Aligned_cols=470 Identities=16% Similarity=0.184 Sum_probs=317.4
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~ 1457 (2058)
...+.+.+.+.++ +...|.-+..++..+...-+ ....-++..+.+.+.++++.+|-.|..++..+. .++..+
T Consensus 42 ~~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~---~~~~~~ 113 (526)
T PF01602_consen 42 FLFMEVIKLISSK-DLELKRLGYLYLSLYLHEDP----ELLILIINSLQKDLNSPNPYIRGLALRTLSNIR---TPEMAE 113 (526)
T ss_dssp STHHHHHCTCSSS-SHHHHHHHHHHHHHHTTTSH----HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH----SHHHHH
T ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc---ccchhh
Confidence 3455566666654 78888877666655543322 234557788888999999999999999988875 455568
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---hh
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PE 1534 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~ 1534 (2058)
.++|.+.+.+.+++|.+|+.|+.++..+....|+.+... +++.+.+++.|+++.|+.+|+.++..+ +.-.+ +.
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~ 189 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL 189 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh
Confidence 899999999999999999999999999999888765442 688888899999999999999999998 21111 23
Q ss_pred HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhH--hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000143 1535 IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l--~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~ 1611 (2058)
+..++..+.+.+.++++..+ ..+..+.. +.. ...... ..+++.+...+.+.++.+...++.++..+.. .
T Consensus 190 ~~~~~~~L~~~l~~~~~~~q~~il~~l~~--~~~-~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~---~-- 261 (526)
T PF01602_consen 190 IPKLIRILCQLLSDPDPWLQIKILRLLRR--YAP-MEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP---S-- 261 (526)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTT--STS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---S--
T ss_pred HHHHHHHhhhcccccchHHHHHHHHHHHh--ccc-CChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhc---c--
Confidence 45666666666678887665 55666543 211 111222 4577888888888788888888777765432 1
Q ss_pred chhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch
Q 000143 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2058)
Q Consensus 1612 ~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~ 1691 (2058)
.+....+++.+...+.++++++|..+.+++..++....+..+.. ...+..+..+++..+|..+...+..++. .
T Consensus 262 --~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~--~~~~~~l~~~~d~~Ir~~~l~lL~~l~~---~ 334 (526)
T PF01602_consen 262 --PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQ--SLILFFLLYDDDPSIRKKALDLLYKLAN---E 334 (526)
T ss_dssp --HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTH--HHHHHHHHCSSSHHHHHHHHHHHHHH-----H
T ss_pred --hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhh--hhhhheecCCCChhHHHHHHHHHhhccc---c
Confidence 12567789999999999999999999999999887653332211 1223455545666688888887776664 3
Q ss_pred hHHHHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1692 VYFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1692 ~~l~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
.....+++.+...+.+. +..+|..++..++.++..+...+..|+ +.+++.+....+.+...+...+..++.....
T Consensus 335 ~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v----~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~ 410 (526)
T PF01602_consen 335 SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYV----DTLLKLLEISGDYVSNEIINVIRDLLSNNPE 410 (526)
T ss_dssp HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHH----HHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT
T ss_pred cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHH----HHHHHhhhhccccccchHHHHHHHHhhcChh
Confidence 45667888888888554 888999999999999998876655554 5555556556666777778888887766543
Q ss_pred cchhchHHhHhhhcCC-CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHH
Q 000143 1771 TSLPLLLPAVEDGIFN-DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2058)
Q Consensus 1771 ~~l~~llp~L~~~l~d-~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L 1849 (2058)
. -...+..+.+.+.+ .+..++..++..+|+....... .+....++..+
T Consensus 411 ~-~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~------------------------------~~~~~~~~~~l 459 (526)
T PF01602_consen 411 L-REKILKKLIELLEDISSPEALAAAIWILGEYGELIEN------------------------------TESAPDILRSL 459 (526)
T ss_dssp T-HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT------------------------------TTHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc------------------------------cccHHHHHHHH
Confidence 2 23355556655554 5678899999999997422110 00111233333
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhChh-hHHHhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000143 1850 YMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLA--SSSSERRQVAGRALGEL 1912 (2058)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~lv~~~~~-~l~~~l~~L~~~l~~~L~--~~~~~~R~~A~~~Lg~L 1912 (2058)
.....+....||...+..+..+....+. ... +.+.+.+..... +.+.++|+-|.+.+.-+
T Consensus 460 ~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~---~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 460 IENFIEESPEVKLQILTALAKLFKRNPENEVQ---NEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHH---HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHhhccccHHHHHHHHHHHHHHHhhCCchhhH---HHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3334455567888777777666655542 222 233344443344 77888888887766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-08 Score=128.58 Aligned_cols=728 Identities=16% Similarity=0.151 Sum_probs=393.1
Q ss_pred HHHHHHHhHhccC--CcchHHHHHHHHhhhC--CCCHHHHHHHHHhhHhhHhhcccc------hHHHHHHHHHHHhcCCC
Q 000143 1282 IFTGALAKHLAKD--DPKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDE------APTLVSRLLDQLMKSDK 1351 (2058)
Q Consensus 1282 ~~Lg~La~~l~~~--~p~i~~iv~~Ll~~L~--~~~~~V~~av~~~L~~l~~~~~~~------~~~~v~~Ll~~L~~~~~ 1351 (2058)
.+|.-+..+.++. ..++.+++..|...+. ..+..|.+.+..||..+.+.-+-. ....+..++.-.. ++.
T Consensus 73 ~LL~li~~~VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~-h~~ 151 (1176)
T KOG1248|consen 73 YLLVLILKYVPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAA-HKK 151 (1176)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHh-cCc
Confidence 4444444444331 1234555555655555 667889999999999998763211 2334444444333 456
Q ss_pred HHHHHHHHHHHHHHHhhhCccccchh----chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 000143 1352 YGERRGAAFGLAGVVKGFGISSLKKY----GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g~~~l~~~----~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~ 1427 (2058)
+.+|..|..++..++.+..-.....+ .+..+..+.+...-.+..-...+..+.-|-..+...=.+.+..+-..++.
T Consensus 152 pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~ 231 (1176)
T KOG1248|consen 152 PKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLN 231 (1176)
T ss_pred hHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 89999999999999885321111111 12233333333322222233333333333333332225667788888999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhhhhh----HHhHHHHHHHhccCC-ChHH--HH--HHHHHHHHHHhhChhhHhhhhh
Q 000143 1428 AFSDQVVAVREAAECAARAMMSQLSAQG----VKLVLPSLLKGLEDK-AWRT--KQ--SSVQLLGAMAYCAPQQLSQCLP 1498 (2058)
Q Consensus 1428 ~l~D~~~~VR~aA~~al~~l~~~l~~~~----v~~llp~Ll~~L~~~-~~~~--R~--~a~~~Lg~la~~~p~~l~~~L~ 1498 (2058)
.+...+..|+-.+.+|+..+....+... ...++..+.+.--+. +... .. .-..+...++...++.....++
T Consensus 232 i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la~~q~~~~~~~~~ 311 (1176)
T KOG1248|consen 232 ITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILATLQEEKALQALP 311 (1176)
T ss_pred hcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhCHHHHHHhhh
Confidence 9999999999999999999987766522 133444443332221 1111 10 0112333344444555556778
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHH-HHhccCCCChhH-HHHHHHHHh-ccccccCChhhHh
Q 000143 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT-LLMGLTDPNDHT-KYSLDILLQ-TTFVNTVDAPSLA 1575 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~-Ll~~l~d~~~~v-r~al~~L~~-~~f~~~~~~~~l~ 1575 (2058)
.+++.++.++...++++-+++-+++..+...... +.+.+-.. +...+.-+...+ |.++..+.. ..-..+..+|.+.
T Consensus 312 ~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~ 390 (1176)
T KOG1248|consen 312 RLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELT 390 (1176)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHH
Confidence 8888888888888899999999999888764322 11111111 111121111111 223332221 0001112223322
Q ss_pred hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCC--------------------------------CchhhhHhhhhHH
Q 000143 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP--------------------------------KDMIPYIGLLLPE 1623 (2058)
Q Consensus 1576 ~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~--------------------------------~~l~pyl~~ll~~ 1623 (2058)
..+..+...=.+++..-+.+.-++||.-...+|.. ..+.-|...++|.
T Consensus 391 ~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpl 470 (1176)
T KOG1248|consen 391 KTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPL 470 (1176)
T ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHHHhhccCcHHHHHHHHHHH
Confidence 22222222111111111222333333332222110 0011122223333
Q ss_pred HHHhh------CCC--CHHHHHHHHHHHHHHHHhhc---cc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHh
Q 000143 1624 VKKVL------VDP--IPEVRSVAARAIGSLIRGMG---EE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689 (2058)
Q Consensus 1624 L~~~l------~d~--~~~vR~~a~~aLg~l~~~lg---~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~ 1689 (2058)
...+. .+. ...+-.+....|-.+..++. -+ .|.++.|.+...+...+ +.|...+.+|-.+++..
T Consensus 471 a~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~--elr~~Ic~sL~~Lv~~n 548 (1176)
T KOG1248|consen 471 AMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRP--ELRETICNSLRMLVEQN 548 (1176)
T ss_pred HHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcch--HhHHHHHHHHHHHHHcC
Confidence 22221 111 11122222222222222211 11 37778888888876433 57888888887777653
Q ss_pred c--------hh----HHHHhhHHHHHhhccCCh------hHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCH
Q 000143 1690 G--------TV----YFEHILPDIIRNCSHQRA------SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2058)
Q Consensus 1690 g--------~~----~l~~llp~Ll~~l~~~~~------~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~ 1751 (2058)
- .+ +-..+||.+++....+.. ..|...+.... ...+...+......+...+-....+.++
T Consensus 549 ~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~--~~~~~~t~~dv~~~l~~s~~e~as~~~~ 626 (1176)
T KOG1248|consen 549 KPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIR--VDYFTVTPTDVVGSLKDSAGELASDLDE 626 (1176)
T ss_pred CCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHH--HHHhhcccHHHHHHHHHHHHhHhccchh
Confidence 1 11 335688888888776522 23333332222 1122222222223333333334444445
Q ss_pred HHHHHHHHHHH----HHHHHhcccchhchHHhHhh-hcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcch
Q 000143 1752 SVRDAALGAGH----VLVEHYATTSLPLLLPAVED-GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2058)
Q Consensus 1752 ~VR~~a~~al~----~lv~~~~~~~l~~llp~L~~-~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~ 1826 (2058)
.++..-...+- .+........+..++ .+.. .....+..++.-+.++++.++.. .++
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~---~s~--------------- 687 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQTESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSS---PSG--------------- 687 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhccccchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcC---Cch---------------
Confidence 55443322222 222222223333333 2222 22334678888888888887521 000
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHH
Q 000143 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAG 1906 (2058)
Q Consensus 1827 e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~ 1906 (2058)
+.+-..+.+.+...+....++.....+...+.+|+.+....+.....+++.+++-++-.+.+-+...|+.|.
T Consensus 688 --------~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af 759 (1176)
T KOG1248|consen 688 --------EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAF 759 (1176)
T ss_pred --------hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHH
Confidence 011112333445555556677888899999999999998888777788888888877777888999999999
Q ss_pred HHHHHHHH--Hh---C-cc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCC
Q 000143 1907 RALGELVR--KL---G-ER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977 (2058)
Q Consensus 1907 ~~Lg~L~~--~l---g-~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~ 1977 (2058)
.||-.++. .. | +. .++.+++.+..++-.+...++...+.+++.++...+...-.+++..++..+.-.+...
T Consensus 760 ~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~ 839 (1176)
T KOG1248|consen 760 ALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN 839 (1176)
T ss_pred HHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC
Confidence 99988883 21 2 11 4678888888887655555554445677777766554334567788999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCh----hhHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhcCCccchhhhh
Q 000143 1978 ILEVRESAGLAFSTLFKSAGM----QAIDEIVPTLLHALEDDQ--TSDTALDGLKQILSVRTTAVLPHILP 2042 (2058)
Q Consensus 1978 d~~VR~~Aa~a~~~l~~~~g~----~~~~~ilp~Ll~~L~~~~--~~~~al~aL~~i~~~~~~~~lp~lip 2042 (2058)
.++++.+|...+..++...+. ++.++++|.++.++.+.. .+-.+-.-|..+++..+...+.-++|
T Consensus 840 sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 840 SREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH
Confidence 999999999999999877764 578899999999887644 23334444455566665444444444
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-11 Score=159.69 Aligned_cols=479 Identities=18% Similarity=0.193 Sum_probs=322.2
Q ss_pred hhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 000143 1451 LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2058)
Q Consensus 1451 l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2058)
..++.+....+.+.+.+.+++...|+.+..++..+....++. +.-+++.+.+-++++++.+|..|+++++.++.
T Consensus 35 ~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~----~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-- 108 (526)
T PF01602_consen 35 MLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL----LILIINSLQKDLNSPNPYIRGLALRTLSNIRT-- 108 (526)
T ss_dssp HTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH----HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--
T ss_pred HcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH----HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--
Confidence 344566788899999999999999999999999888777663 23567788888999999999999999999873
Q ss_pred CchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhh-HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC
Q 000143 1531 KNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLAL-LVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2058)
Q Consensus 1531 ~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~-llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~ 1608 (2058)
....+.++|.+.+.+.|+++++| .|+-++...-. .+...... +.+.+.+.+.|+++.++..|+.++..+ + .
T Consensus 109 -~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~---~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~--~ 181 (526)
T PF01602_consen 109 -PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYR---KDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-K--C 181 (526)
T ss_dssp -HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH---HCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-H--C
T ss_pred -cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhc---cCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-c--c
Confidence 33458889999999999999998 46655554111 11222233 689999999999999999998888887 2 1
Q ss_pred CCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCc--cchHHHHHhhcccCCChHHHhhHHHHHHHHH
Q 000143 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF--PDLVSWLLDALKSDNSNVERSGAAQGLSEVL 1686 (2058)
Q Consensus 1609 ~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~--~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~ 1686 (2058)
.++...+..+.++..+.+.+.+++|-.+..+++.+..++..-.. .. ..+++.+...+.+ .+..+...++..+..+
T Consensus 182 ~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~-~~~~~~~i~~l~~~l~s-~~~~V~~e~~~~i~~l- 258 (526)
T PF01602_consen 182 NDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE-DADKNRIIEPLLNLLQS-SSPSVVYEAIRLIIKL- 258 (526)
T ss_dssp THHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-
T ss_pred CcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh-hhhHHHHHHHHHHHhhc-cccHHHHHHHHHHHHh-
Confidence 22222245666777777777889998888888888766542211 12 3567777676663 3333444444444432
Q ss_pred HHhchh-HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000143 1687 AALGTV-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1687 ~~~g~~-~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv 1765 (2058)
.... ....+++.+...+.++++.+|-.++.++..++......+ ......+.....+++..||..+++.+..++
T Consensus 259 --~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v----~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 259 --SPSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV----FNQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp --SSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH----GTHHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred --hcchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhh----hhhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 2222 357788889999999999999999999988877653222 111222333334888999999988887776
Q ss_pred HHhcccchhchHHhHhhhcCC-CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHH
Q 000143 1766 EHYATTSLPLLLPAVEDGIFN-DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844 (2058)
Q Consensus 1766 ~~~~~~~l~~llp~L~~~l~d-~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~ 1844 (2058)
. +..+..+++.+.+.+.+ .+..+|..++..++.+.....+. .+ .
T Consensus 333 ~---~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~----------------~~----------------~ 377 (526)
T PF01602_consen 333 N---ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD----------------AE----------------W 377 (526)
T ss_dssp ----HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS----------------HH----------------H
T ss_pred c---ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch----------------HH----------------H
Confidence 4 33455578888887733 36678999999999886443110 11 1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc-chhhc
Q 000143 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE-RVLPS 1923 (2058)
Q Consensus 1845 vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~-~~l~~ 1923 (2058)
.+..+..........+...+...+..++.+.+..-...+..+...+. .-.+++.+..++.++|+.+..... ...+.
T Consensus 378 ~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~---~~~~~~~~~~~~wilGEy~~~~~~~~~~~~ 454 (526)
T PF01602_consen 378 YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLE---DISSPEALAAAIWILGEYGELIENTESAPD 454 (526)
T ss_dssp HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHT---SSSSHHHHHHHHHHHHHHCHHHTTTTHHHH
T ss_pred HHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHH---HhhHHHHHHHHHhhhcccCCcccccccHHH
Confidence 22222222222223344555566666666666554455555544432 236778899999999999888765 34566
Q ss_pred hHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000143 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC--DSILEVRESAGLAFSTL 1992 (2058)
Q Consensus 1924 llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~--D~d~~VR~~Aa~a~~~l 1992 (2058)
++..+.+.+.+.++.+|..+..++..+....+.... .+.+++.+..... +.|++||+.|..-+.-+
T Consensus 455 ~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~---~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 455 ILRSLIENFIEESPEVKLQILTALAKLFKRNPENEV---QNEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTH---HHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhh---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 777777777777788999999999888877654322 2467777777777 78999999998776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-09 Score=135.80 Aligned_cols=625 Identities=19% Similarity=0.199 Sum_probs=346.2
Q ss_pred HHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHH----HHHHHHHHHHHHHhc-ccchhhHHHHHHHHH
Q 000143 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRR----EGALLAFECLCEKLG-RLFEPYVIQMLPLLL 1426 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R----~~al~al~~L~~~lg-~~~~p~l~~llp~Ll 1426 (2058)
+..|+.|+..++.+...... . +.+..++...+..++.+..| -+.+.++..+..... +..-||....+..+-
T Consensus 189 ~~~r~~aalllsk~~sR~D~--~--~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~ 264 (1133)
T KOG1943|consen 189 GILRRSAALLLSKLFSRTDV--K--DLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLS 264 (1133)
T ss_pred chhHHHHHHHHHHHcccccH--H--HHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhc
Confidence 47788888888887753211 1 12445555545444444444 566666666666555 345566666555554
Q ss_pred HHcCCCC--HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh---------------C
Q 000143 1427 VAFSDQV--VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC---------------A 1489 (2058)
Q Consensus 1427 ~~l~D~~--~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~---------------~ 1489 (2058)
.+-.+++ .-+|+.-.+...++.-.. -.-.+.+|+..++.-.+.+++-.. .
T Consensus 265 ~~~~~~d~~~llrKllvKl~QRiGlv~-------------l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e 331 (1133)
T KOG1943|consen 265 VCRESNDGQSLLRKLLVKLVQRIGLVS-------------LKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDE 331 (1133)
T ss_pred ccccccccHhHHHHHHHHHHHHhhhee-------------cCCCCcchhhhcccchhhhccCccccccCccccccccccc
Confidence 3332222 233333333332221000 001356898876655444443211 1
Q ss_pred hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhH--HHHHHHHHhccccc
Q 000143 1490 PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT--KYSLDILLQTTFVN 1567 (2058)
Q Consensus 1490 p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~v--r~al~~L~~~~f~~ 1567 (2058)
.++....+..++..|...++|.+..||..|++.++++....+..-..+++...+..+.--+++- -.++-+++......
T Consensus 332 ~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 332 GEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred ccccHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 2234556678888899999999999999999999999988763333555555555332111111 12222233211222
Q ss_pred cCChhhHhhHHHHHHHhhc--------CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHH-hhCCCCHHHHHH
Q 000143 1568 TVDAPSLALLVPIVHRGLR--------ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK-VLVDPIPEVRSV 1638 (2058)
Q Consensus 1568 ~~~~~~l~~llp~L~~~L~--------d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~-~l~d~~~~vR~~ 1638 (2058)
-.-...+..++|.+.+++. .....+|..||-++-.+++. ..+.++.|+++.+.+.|+. ++-|+.-+.|.+
T Consensus 412 lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra-ys~~~l~p~l~~L~s~LL~~AlFDrevncRRA 490 (1133)
T KOG1943|consen 412 LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA-YSPSDLKPVLQSLASALLIVALFDREVNCRRA 490 (1133)
T ss_pred CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc-CChhhhhHHHHHHHHHHHHHHhcCchhhHhHH
Confidence 2223345678898888773 13467999999999999886 5778999999988887654 577999999999
Q ss_pred HHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHh-hccCChhHHHHHH
Q 000143 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRN-CSHQRASVRDGYL 1717 (2058)
Q Consensus 1639 a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~-l~~~~~~vR~~al 1717 (2058)
|..|+-..+...| .+|.-++.+ .... .-.-..|..+-..+...+..+. .|.+.++..++.. +.+.+..+|+.+.
T Consensus 491 AsAAlqE~VGR~~--n~p~Gi~Li-s~~d-y~sV~~rsNcy~~l~~~ia~~~-~y~~~~f~~L~t~Kv~HWd~~irelaa 565 (1133)
T KOG1943|consen 491 ASAALQENVGRQG--NFPHGISLI-STID-YFSVTNRSNCYLDLCVSIAEFS-GYREPVFNHLLTKKVCHWDVKIRELAA 565 (1133)
T ss_pred HHHHHHHHhccCC--CCCCchhhh-hhcc-hhhhhhhhhHHHHHhHHHHhhh-hHHHHHHHHHHhcccccccHHHHHHHH
Confidence 9888776553322 344444422 2211 2222245554455554444332 2556677666655 8888999999999
Q ss_pred HHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccc----------hh---chHHhHhhhc
Q 000143 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS----------LP---LLLPAVEDGI 1784 (2058)
Q Consensus 1718 ~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~----------l~---~llp~L~~~l 1784 (2058)
.++..+.....+.+.. ..+|+++...-..+...|....-+.+.++.....-. +. .++|.+...-
T Consensus 566 ~aL~~Ls~~~pk~~a~---~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~ 642 (1133)
T KOG1943|consen 566 YALHKLSLTEPKYLAD---YVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRY 642 (1133)
T ss_pred HHHHHHHHhhHHhhcc---cchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHH
Confidence 9999988876664432 467888887777788888888877777654432111 11 1222222111
Q ss_pred CCCC--HHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHH-HhhcCCCHHHH
Q 000143 1785 FNDN--WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY-MVRSDVSLSVR 1861 (2058)
Q Consensus 1785 ~d~~--~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~-~~~~D~~~~VR 1861 (2058)
.... .-+|.+.+..+..+- .++. ..+ +++.-.-+..+. ....+.+ .+|
T Consensus 643 ~~rg~~~lmr~~~~~~Ie~~s--------------~s~~-------------~~~-~~~v~e~~~~ll~~~l~~~n-~i~ 693 (1133)
T KOG1943|consen 643 FYRGQGTLMRQATLKFIEQLS--------------LSKD-------------RLF-QDFVIENWQMLLAQNLTLPN-QIR 693 (1133)
T ss_pred hccchHHHHHHHHHHHHHHhh--------------hccc-------------hhH-HHHHHHHHHHHHHHhhcchH-HHH
Confidence 1111 123333333322220 0000 000 011111111111 1112333 788
Q ss_pred HHHHHHHHHHHhhCh-hhHHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCcchh-hchHHHHhhhcCCC-Ch
Q 000143 1862 QAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGERVL-PSIIPILSRGLKDP-SA 1937 (2058)
Q Consensus 1862 ~aA~~~l~~lv~~~~-~~l~~~l~~L~~~l~~~L~~~-~~~~R~~A~~~Lg~L~~~lg~~~l-~~llp~L~~~l~d~-~~ 1937 (2058)
++|...++.++...- .+-.... .++..++..+.++ +..+|....-++|.+...+-...+ ..+...+....... ++
T Consensus 694 ~~av~av~~l~s~y~~~d~~~~~-~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a 772 (1133)
T KOG1943|consen 694 DAAVSAVSDLVSTYVKADEGEEA-PLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWA 772 (1133)
T ss_pred HHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccH
Confidence 999888888875321 1111111 3444455555655 566777666666655533221122 22333333333333 67
Q ss_pred hHHHHHHHHHHHHHHhhC----hhhhHhHHhhHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhC-hhhHH-----H
Q 000143 1938 SRRQGVCIGLSEVMASAG----KSQLLSFMDELIPTIRTALCDSI----LEVRESAGLAFSTLFKSAG-MQAID-----E 2003 (2058)
Q Consensus 1938 ~vR~~a~~aL~eii~~~~----~~~l~~~~~~ll~~L~~~L~D~d----~~VR~~Aa~a~~~l~~~~g-~~~~~-----~ 2003 (2058)
..|+..+.++..++...+ .+...++.+.++..+-+...|+. .-||++|..++-.+.-... ++.+| .
T Consensus 773 ~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~ 852 (1133)
T KOG1943|consen 773 EARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINR 852 (1133)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHH
Confidence 889888888887776654 23445566666666666655543 4589999999988865443 22222 2
Q ss_pred HHHHHHHhcCC--CcchHHHHHHHHHHHhhc
Q 000143 2004 IVPTLLHALED--DQTSDTALDGLKQILSVR 2032 (2058)
Q Consensus 2004 ilp~Ll~~L~~--~~~~~~al~aL~~i~~~~ 2032 (2058)
++-.+++.--+ +..++.+.+++.+++.+.
T Consensus 853 ~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~ 883 (1133)
T KOG1943|consen 853 IIRYFVQQAVEKIDRLRELAASALNQIVVHS 883 (1133)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhceeecC
Confidence 22222222111 123688899998888773
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.7e-09 Score=137.09 Aligned_cols=490 Identities=13% Similarity=0.090 Sum_probs=309.7
Q ss_pred CHHHHHHHHHHH-HHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHc
Q 000143 1351 KYGERRGAAFGL-AGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2058)
Q Consensus 1351 ~~~vR~~Aa~~L-~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l 1429 (2058)
+...|+.+.+.+ +.+.. |.+.. .+.+.+...+.++ |...|.-+...+...++.- .....-.++.+.+.+
T Consensus 45 ~~~~kk~alKkvIa~mt~--G~DvS---~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~----pelalLaINtl~KDl 114 (746)
T PTZ00429 45 DSYRKKAAVKRIIANMTM--GRDVS---YLFVDVVKLAPST-DLELKKLVYLYVLSTARLQ----PEKALLAVNTFLQDT 114 (746)
T ss_pred CHHHHHHHHHHHHHHHHC--CCCch---HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccC----hHHHHHHHHHHHHHc
Confidence 344455555433 33333 32221 4555566666666 7888887666555443321 122345678888999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc
Q 000143 1430 SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2058)
Q Consensus 1430 ~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~ 1509 (2058)
.|+++.+|-.|++++..+. .++.++.+++.+.+.+.|.+..+|+.|+.++..+....|+.+.. ..+++.+.++++
T Consensus 115 ~d~Np~IRaLALRtLs~Ir---~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~--~~~~~~L~~LL~ 189 (746)
T PTZ00429 115 TNSSPVVRALAVRTMMCIR---VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQ--QDFKKDLVELLN 189 (746)
T ss_pred CCCCHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccc--cchHHHHHHHhc
Confidence 9999999999988777652 33445778888899999999999999999999998877754322 256677888899
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCchh--HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhc
Q 000143 1510 DTHPKVQSAGQTALQQVGSVIKNPE--IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2058)
Q Consensus 1510 D~~~~VR~aA~~aL~~l~~~~~~~~--i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~ 1586 (2058)
|+++.|...|+.+|..+.+..++.. ....+..++..+.+-++-.+ ..++.+.. +.+. +......++..+...++
T Consensus 190 D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~--y~P~-~~~e~~~il~~l~~~Lq 266 (746)
T PTZ00429 190 DNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA--QRPS-DKESAETLLTRVLPRMS 266 (746)
T ss_pred CCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh--cCCC-CcHHHHHHHHHHHHHhc
Confidence 9999999999999999976543321 24445556666655444433 45555543 3322 22334567777788888
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhc
Q 000143 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL 1666 (2058)
Q Consensus 1587 d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L 1666 (2058)
..++.|...|+.++-.+.... ++.........+.+.++.+ ...++++|..+.+.+..+..... ..|..-+..++-.
T Consensus 267 ~~N~AVVl~Aik~il~l~~~~-~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~Ff~~- 342 (746)
T PTZ00429 267 HQNPAVVMGAIKVVANLASRC-SQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDSFYVR- 342 (746)
T ss_pred CCCHHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHhhhcc-
Confidence 889999999888887765432 2122222233344555555 45678999999999988876442 2222222222222
Q ss_pred ccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc
Q 000143 1667 KSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2058)
Q Consensus 1667 ~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L 1746 (2058)
.+|+.. +|......|..++ ..+..+.++.++...+.+.+...+..++.++|.++..+.. ....++..+++.+
T Consensus 343 ~~Dp~y-IK~~KLeIL~~La---ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~----~a~~cV~~Ll~ll 414 (746)
T PTZ00429 343 YSDPPF-VKLEKLRLLLKLV---TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDS----VAPDCANLLLQIV 414 (746)
T ss_pred cCCcHH-HHHHHHHHHHHHc---CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChH----HHHHHHHHHHHHh
Confidence 235544 5666666555543 4446678888899888888999999999999999876654 4566777777777
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhc---CCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCC
Q 000143 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI---FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1823 (2058)
Q Consensus 1747 ~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l---~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~ 1823 (2058)
.+..+.+ ..++..++.++..+.... +++.+.+.+ .-.+...|.+.+.++|++...+
T Consensus 415 ~~~~~~v-~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I----------------- 473 (746)
T PTZ00429 415 DRRPELL-PQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFI----------------- 473 (746)
T ss_pred cCCchhH-HHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhH-----------------
Confidence 7655544 356788888888776542 345444322 1135677888888888863211
Q ss_pred cchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHH
Q 000143 1824 ASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1903 (2058)
Q Consensus 1824 ~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~ 1903 (2058)
+.+ ..++..+.....+....||...+.....+....|...++.+..++.... -.+.++++|.
T Consensus 474 ---~~a-------------~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t--~~~~d~DVRD 535 (746)
T PTZ00429 474 ---ENG-------------KDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVT--THSDDPDVRD 535 (746)
T ss_pred ---hhH-------------HHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH--hcCCChhHHH
Confidence 000 1223233333445567788777766666665566544554444443322 2357888888
Q ss_pred HHHHHH
Q 000143 1904 VAGRAL 1909 (2058)
Q Consensus 1904 ~A~~~L 1909 (2058)
-|..-.
T Consensus 536 RA~~Y~ 541 (746)
T PTZ00429 536 RAFAYW 541 (746)
T ss_pred HHHHHH
Confidence 776544
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-07 Score=119.60 Aligned_cols=491 Identities=15% Similarity=0.203 Sum_probs=280.7
Q ss_pred chHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-h-Cccc
Q 000143 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG-F-GISS 1373 (2058)
Q Consensus 1297 ~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~-~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~-~-g~~~ 1373 (2058)
.++.+++.|++.++|.+..||-++++.++.+....+... .+.+...++-+.-.+++..-.+|+-+|+.++.. + -+..
T Consensus 338 ivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 338 IVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 356788889999999999999999999998887665432 344555555333334567777999999998863 2 1222
Q ss_pred cchhchHHHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHH-HHcCCCCHHHHHHHHHHH
Q 000143 1374 LKKYGIAATLREGLADR-------NSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLL-VAFSDQVVAVREAAECAA 1444 (2058)
Q Consensus 1374 l~~~~il~~L~~~l~~~-------~~~~~R~~al~al~~L~~~lg-~~~~p~l~~llp~Ll-~~l~D~~~~VR~aA~~al 1444 (2058)
+ .+++|.+...+.=+ ...++|++|+.....+++... ..++|++..+.+.++ ..+-|++-++|++|..|+
T Consensus 418 l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAl 495 (1133)
T KOG1943|consen 418 L--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAAL 495 (1133)
T ss_pred H--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHH
Confidence 2 27888888776422 245789999999999988765 468999998887766 678999999999999999
Q ss_pred HHHHHhhhh--hhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHH-HhcCCCHHHHHHHHH
Q 000143 1445 RAMMSQLSA--QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE-VLTDTHPKVQSAGQT 1521 (2058)
Q Consensus 1445 ~~l~~~l~~--~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~-~L~D~~~~VR~aA~~ 1521 (2058)
...+...+. ++++.+ ...+.-.-..|..+-..+..... ++..|...++..+.. -+..-++.+|+.+++
T Consensus 496 qE~VGR~~n~p~Gi~Li-----s~~dy~sV~~rsNcy~~l~~~ia----~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 496 QENVGRQGNFPHGISLI-----STIDYFSVTNRSNCYLDLCVSIA----EFSGYREPVFNHLLTKKVCHWDVKIRELAAY 566 (1133)
T ss_pred HHHhccCCCCCCchhhh-----hhcchhhhhhhhhHHHHHhHHHH----hhhhHHHHHHHHHHhcccccccHHHHHHHHH
Confidence 888766443 233211 11111011122222222222222 233344455554443 366777999999999
Q ss_pred HHHHHHhhcCchhH-HhHHHHHHhccCCCChhHHH----HH-HHHHh---ccc-cccCChhhHhh---HHHHH-HHhhc-
Q 000143 1522 ALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKY----SL-DILLQ---TTF-VNTVDAPSLAL---LVPIV-HRGLR- 1586 (2058)
Q Consensus 1522 aL~~l~~~~~~~~i-~~lvp~Ll~~l~d~~~~vr~----al-~~L~~---~~f-~~~~~~~~l~~---llp~L-~~~L~- 1586 (2058)
+|..+...-. +++ ...+|.++.....++...|. +. +.++. ... ....+...++. ++|.+ .+.+.
T Consensus 567 aL~~Ls~~~p-k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~r 645 (1133)
T KOG1943|consen 567 ALHKLSLTEP-KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYR 645 (1133)
T ss_pred HHHHHHHhhH-HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhcc
Confidence 9999876432 233 35556666555545544442 11 11111 110 00111112222 12222 22111
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHH----hhCCCCHHHHHHHHHHHHHHHHh--hcccCcc-chH
Q 000143 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK----VLVDPIPEVRSVAARAIGSLIRG--MGEENFP-DLV 1659 (2058)
Q Consensus 1587 d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~----~l~d~~~~vR~~a~~aLg~l~~~--lg~~~~~-~ll 1659 (2058)
....-.|...++.+..+.. .+..-+ ...+...... .+.+++ .+|..+..+++.++.. .+++... +++
T Consensus 646 g~~~lmr~~~~~~Ie~~s~--s~~~~~---~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li 719 (1133)
T KOG1943|consen 646 GQGTLMRQATLKFIEQLSL--SKDRLF---QDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLI 719 (1133)
T ss_pred chHHHHHHHHHHHHHHhhh--ccchhH---HHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHH
Confidence 1113345555555555432 121111 1112222222 223455 7899999999999874 3344333 377
Q ss_pred HHHHhhcccCCChHHHhhHHHHHHHHHHHhchhH-HHHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhch-hHHHhHH
Q 000143 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGV-QFQNYLQ 1736 (2058)
Q Consensus 1660 p~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~-l~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~-~f~pyl~ 1736 (2058)
...+..+.++.+...|.+...+++.+....=.-+ .+.+...++...-.. .+.-|...+.++..++...+. .|..-..
T Consensus 720 ~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~ 799 (1133)
T KOG1943|consen 720 TRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIE 799 (1133)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHH
Confidence 7777888766666678777766655432211112 233333333333333 667788888888888887762 2333445
Q ss_pred HHHHHHHHhccC----CC----HHHHHHHHHHHHHHHHHhcc-cch-----hchHHhHhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1737 QVLPAILDGLAD----EN----ESVRDAALGAGHVLVEHYAT-TSL-----PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1737 ~ilp~Ll~~L~d----~~----~~VR~~a~~al~~lv~~~~~-~~l-----~~llp~L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
++...+++++.| .. .-||++|+.++..+...... +.+ ..++-.+.+-..++-.+.|..+..++..+
T Consensus 800 k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi 879 (1133)
T KOG1943|consen 800 KFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQI 879 (1133)
T ss_pred HHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhce
Confidence 555556665543 22 46999999999888766552 221 11222222222344456677777666666
Q ss_pred HHH
Q 000143 1803 LFK 1805 (2058)
Q Consensus 1803 l~~ 1805 (2058)
+++
T Consensus 880 ~~~ 882 (1133)
T KOG1943|consen 880 VVH 882 (1133)
T ss_pred eec
Confidence 543
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-11 Score=145.96 Aligned_cols=251 Identities=19% Similarity=0.136 Sum_probs=151.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~l 1459 (2058)
++.|...+.++ +..+|..++.+|+.+.. ..+++.+...+.|+++.+|..|.++|+.+...- ......
T Consensus 25 ~~~L~~~L~d~-d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~--~~~~~a 91 (280)
T PRK09687 25 DDELFRLLDDH-NSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAK--RCQDNV 91 (280)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc--cchHHH
Confidence 44555666665 78888888887765532 245666677778888888888888888874211 112345
Q ss_pred HHHHHHh-ccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000143 1460 LPSLLKG-LEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2058)
Q Consensus 1460 lp~Ll~~-L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~l 1538 (2058)
+|.|... ++|++|.+|..++.+||.+....+ ...+.+++.+...+.|+++.||..+..+|+.++. ...
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~----~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-------~~a 160 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNP----LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-------EAA 160 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccc----ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-------HHH
Confidence 6666655 567788888888888887743221 1134556666777788888888888888876642 235
Q ss_pred HHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH
Q 000143 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2058)
Q Consensus 1539 vp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl 1617 (2058)
++.|+..+.|++..+| .|+.+|+...+ ....+.+.|...+.|.++.||..|...+|.+. +
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~~~-------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~-------- 221 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSNKY-------DNPDIREAFVAMLQDKNEEIRIEAIIGLALRK----D-------- 221 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCC-------CCHHHHHHHHHHhcCCChHHHHHHHHHHHccC----C--------
Confidence 5666667777766666 45556654211 01134555666666666666666666555432 1
Q ss_pred hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHH
Q 000143 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682 (2058)
Q Consensus 1618 ~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L 1682 (2058)
+..+|.|...+.+++ +|..++.|+|.+.. ++.+|.|.+.+..+.+..++..+..++
T Consensus 222 ~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-------~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 222 KRVLSVLIKELKKGT--VGDLIIEAAGELGD-------KTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-------HhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 134555666666554 44455555555542 345666655555344444555444443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-11 Score=168.15 Aligned_cols=274 Identities=22% Similarity=0.252 Sum_probs=203.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2058)
.++.|+..+.|+++.||..|..+|+.+.. +..+|.|...|.|+++.+|..|+.+|+.+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~--------- 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP--------- 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc---------
Confidence 45677788899999999999999987631 34678888899999999999999999887643221
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHH
Q 000143 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVP 1579 (2058)
Q Consensus 1501 ip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp 1579 (2058)
.+.+...|+|+++.||.+|+.+|+.+.. ++ .+.++..+.|++..+| +++.+|+.. +. .+
T Consensus 686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~------~~~l~~~L~D~d~~VR~~Av~aL~~~------~~------~~ 745 (897)
T PRK13800 686 APALRDHLGSPDPVVRAAALDVLRALRA--GD------AALFAAALGDPDHRVRIEAVRALVSV------DD------VE 745 (897)
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhhcc--CC------HHHHHHHhcCCCHHHHHHHHHHHhcc------cC------cH
Confidence 2356677888999999999999998752 11 2346678889998888 677777642 11 13
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchH
Q 000143 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLV 1659 (2058)
Q Consensus 1580 ~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~ll 1659 (2058)
.+...+.|.++.+|..++..++.+... + ...++.|..++.|+++.||..|+.+|+.+.. . +.+.
T Consensus 746 ~l~~~l~D~~~~VR~~aa~aL~~~~~~--~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~--~~~~ 809 (897)
T PRK13800 746 SVAGAATDENREVRIAVAKGLATLGAG--G--------APAGDAVRALTGDPDPLVRAAALAALAELGC----P--PDDV 809 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhccc--c--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c--chhH
Confidence 456778899999999999888877541 1 1125677788889999999999999987742 1 2344
Q ss_pred HHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHH
Q 000143 1660 SWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2058)
Q Consensus 1660 p~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~il 1739 (2058)
+.+...|. |+++.+|..++.+|+.+. . ++.++.|...+.|+++.||..++.+|+.+. +. +...
T Consensus 810 ~~l~~aL~-d~d~~VR~~Aa~aL~~l~----~---~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~------~~a~ 872 (897)
T PRK13800 810 AAATAALR-ASAWQVRQGAARALAGAA----A---DVAVPALVEALTDPHLDVRKAAVLALTRWP---GD------PAAR 872 (897)
T ss_pred HHHHHHhc-CCChHHHHHHHHHHHhcc----c---cchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC------HHHH
Confidence 55667776 556779999999887642 2 245577778888899999999988888751 11 2456
Q ss_pred HHHHHhccCCCHHHHHHHHHHHHH
Q 000143 1740 PAILDGLADENESVRDAALGAGHV 1763 (2058)
Q Consensus 1740 p~Ll~~L~d~~~~VR~~a~~al~~ 1763 (2058)
+.+...+.|++++||..|.+++..
T Consensus 873 ~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 873 DALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhh
Confidence 777788888899999988888753
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-10 Score=143.08 Aligned_cols=377 Identities=17% Similarity=0.156 Sum_probs=270.3
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----hH-HhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhhHhhh
Q 000143 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----GV-KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2058)
Q Consensus 1423 p~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~----~v-~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2058)
+..+..+..+++..+..+..++..+....... .+ ..++|.+.+.+. +.+...+..|..+|..++.+..++....
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 34444444445666777777777776543321 12 578999999997 5668999999999999999877664433
Q ss_pred h-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhccCCCCh--hHHHHHHHHHhccccccC
Q 000143 1497 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPND--HTKYSLDILLQTTFVNTV 1569 (2058)
Q Consensus 1497 L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~--~vr~al~~L~~~~f~~~~ 1569 (2058)
. ...+|.++.++.+++..|++.|.|||+.++..... .++ ..+++.|+..+..+.. ..|.+.-++.. +....
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsN--lcrgk 226 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSN--LCRGK 226 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHH--HHcCC
Confidence 2 36789999999999999999999999999875432 122 4667778888777764 45644444333 11111
Q ss_pred -Ch---hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1570 -DA---PSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1570 -~~---~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
.. ..++.++|.|.+++.+.+.++...||.++..+... ..+.+.-.+ -.++|.|..++..+.+.++..|.+++|
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiG 304 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIG 304 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcc
Confidence 11 24567899999999999999999999999998763 222222222 267899999999999999999999999
Q ss_pred HHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh----HHHHhhHHHHHhhccCChhHHHHH
Q 000143 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGY 1716 (2058)
Q Consensus 1645 ~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~----~l~~llp~Ll~~l~~~~~~vR~~a 1716 (2058)
.++.+-+.. .-...+|.|...+........|..+++.++.|..+.... .-..++|.++..++..+...|..+
T Consensus 305 NIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEA 384 (514)
T KOG0166|consen 305 NIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEA 384 (514)
T ss_pred ceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHH
Confidence 988754443 234688888888885555558999999999998854332 114689999999999999999999
Q ss_pred HHHHHHhHHHhchhHHHhHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccch---hc---------hHHhHhh
Q 000143 1717 LTLFKYLPRSLGVQFQNYLQ--QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL---PL---------LLPAVED 1782 (2058)
Q Consensus 1717 l~~l~~la~~~g~~f~pyl~--~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l---~~---------llp~L~~ 1782 (2058)
++++++++..-..+-..|+- .+++++...|.-.+..+-..++.++..+.+....... .. -+..++.
T Consensus 385 awaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~ 464 (514)
T KOG0166|consen 385 AWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIEN 464 (514)
T ss_pred HHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHH
Confidence 99999988766665556663 3899999999777777777778888776654221111 11 2333444
Q ss_pred hcCCCCHHHHHHHHHHHHHHH
Q 000143 1783 GIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1783 ~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
+-.+++..|...|...+....
T Consensus 465 LQ~hen~~Iy~~A~~II~~yf 485 (514)
T KOG0166|consen 465 LQSHENEEIYKKAYKIIDTYF 485 (514)
T ss_pred hhccccHHHHHHHHHHHHHhc
Confidence 446678888888888888763
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.6e-08 Score=122.34 Aligned_cols=648 Identities=15% Similarity=0.188 Sum_probs=360.4
Q ss_pred hHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHH-HHHHHH--------HHhhc--
Q 000143 1056 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSV-AEAAED--------IWDRY-- 1124 (2058)
Q Consensus 1056 ~~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~-r~~a~~--------~w~~~-- 1124 (2058)
.+.+.+++.++.++|+..|.+|++.|.+.... |.+. ..-+-++..|+.+.+ |+.|.- -|+..
T Consensus 3 ~~~l~~~~~~T~d~d~~~R~~AE~~L~q~~K~-----pgFv--~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~ 75 (1010)
T KOG1991|consen 3 LQSLLQIFRATIDSDAKERKAAEQQLNQLEKQ-----PGFV--SSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEA 75 (1010)
T ss_pred hHHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-----CcHH--HHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCC
Confidence 35677889999999999999999999977511 2222 222334556666655 665542 37765
Q ss_pred -C--CCCCC----CH-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhH
Q 000143 1125 -G--YDFGT----DY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQ 1195 (2058)
Q Consensus 1125 -~--~~~~~----~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~ 1195 (2058)
| +...+ -+ +.+++.+.+....+|-.-..++-.++. .+|+.|+.++...-..++. .....--
T Consensus 76 ~g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs----------~~~~~vy 145 (1010)
T KOG1991|consen 76 PGRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQS----------QDANHVY 145 (1010)
T ss_pred CCCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcC----------cchhhHH
Confidence 2 11211 24 778888888889999999999977764 5688888888877665431 1112346
Q ss_pred HHHHHHHHhhhhhC--CC----Ch----HHHHHHHHH---hhccCCCHHHH---HHHHHHHHHHHHh-h-----Cccchh
Q 000143 1196 GIALALHSAADVLR--TK----DL----PVIMTFLIS---RALADTNADVR---GRMLNAGIMIIDK-H-----GRDNVS 1253 (2058)
Q Consensus 1196 ~~~~al~~l~~~~~--~~----~~----~~l~~~Li~---~~L~d~~~~VR---~~al~a~~~~i~~-~-----g~~~~~ 1253 (2058)
+++.++..++.... .+ .+ ...++.+.+ +.+.+.+...- +.++.....++.. . ..+.+.
T Consensus 146 ~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~ 225 (1010)
T KOG1991|consen 146 GALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFT 225 (1010)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHH
Confidence 78888888887543 11 11 223333322 33444443322 2223322222211 1 124455
Q ss_pred hHHHHHHHHhcccCCChh-----------HHHHHHHHHHHHHHHHHhHhccCC---cc------------hHHHHHHHHh
Q 000143 1254 LLFPIFENYLNKKASDEE-----------KYDLVREGVVIFTGALAKHLAKDD---PK------------VHAVVDKLLD 1307 (2058)
Q Consensus 1254 ~Ll~~l~~~L~~~~~~~e-----------~~~~vR~~av~~Lg~La~~l~~~~---p~------------i~~iv~~Ll~ 1307 (2058)
.-+.+|...++.+.+.+. .+-..++=|+..|.++.+.+.+.. ++ .+.+...+++
T Consensus 226 ~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk 305 (1010)
T KOG1991|consen 226 SWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLK 305 (1010)
T ss_pred HHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666443211 122355667888888886554321 11 1222222222
Q ss_pred hhC---C---CCHHHHHHHH----HhhHh--hHhhcccchHHHHHH-HHHHHh---------cCC--------------C
Q 000143 1308 VLN---T---PSEAVQRAVS----SCLSP--LMQSMQDEAPTLVSR-LLDQLM---------KSD--------------K 1351 (2058)
Q Consensus 1308 ~L~---~---~~~~V~~av~----~~L~~--l~~~~~~~~~~~v~~-Ll~~L~---------~~~--------------~ 1351 (2058)
.+. . -++.|-.-+. .|... .-+.++++...++.. ++..+. +++ -
T Consensus 306 ~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~ 385 (1010)
T KOG1991|consen 306 ILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDG 385 (1010)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhccc
Confidence 221 1 0111111111 11100 000011111111111 111111 111 1
Q ss_pred HHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhcc--cchhhHHH-H
Q 000143 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLGR--LFEPYVIQ-M 1421 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~-------~~~~~~~R~~al~al~~L~~~lg~--~~~p~l~~-l 1421 (2058)
+..+.+|..++-.++...|.+.++ .+++++.+.+. +.++++..+||+.+++.+++.+.+ .++..+.. +
T Consensus 386 ~sp~~Aa~~~l~~~~~KR~ke~l~--k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl 463 (1010)
T KOG1991|consen 386 YSPDTAALDFLTTLVSKRGKETLP--KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL 463 (1010)
T ss_pred CCCcHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH
Confidence 233567788888888888888875 78888887765 335789999999999999987753 23333333 5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH-HhhhhhhH-HhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhCh---hhHhh
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMM-SQLSAQGV-KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAP---QQLSQ 1495 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~-~~l~~~~v-~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p---~~l~~ 1495 (2058)
+++++..+.++--..|..|++.++.+. ..++.... ...+....++|. |.+-.+|..|+.+|..+...++ ..+++
T Consensus 464 v~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 464 VNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 688888999999999999999999998 45555543 677777788887 7789999999999999998876 34899
Q ss_pred hhhhHHHHHHHHhcCCCHHHHHHHHHH-HHHHHhhcCc--hh-HHhHHHHHHhccCC---CChhHH-HHHHHHHh---c-
Q 000143 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTA-LQQVGSVIKN--PE-IASLVPTLLMGLTD---PNDHTK-YSLDILLQ---T- 1563 (2058)
Q Consensus 1496 ~L~~Iip~L~~~L~D~~~~VR~aA~~a-L~~l~~~~~~--~~-i~~lvp~Ll~~l~d---~~~~vr-~al~~L~~---~- 1563 (2058)
++|.++..++.+.++.+-..-....+. +..|++.+.. .+ .+.+...+.+.+.+ .++... .++.+.|- +
T Consensus 544 hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~ 623 (1010)
T KOG1991|consen 544 HVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTIS 623 (1010)
T ss_pred hhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHH
Confidence 999999999999987665544433333 3444444432 12 25556666666653 211111 22222221 0
Q ss_pred ccccc-CChh-----hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHH
Q 000143 1564 TFVNT-VDAP-----SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637 (2058)
Q Consensus 1564 ~f~~~-~~~~-----~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~ 1637 (2058)
+.... .+.| .-..+.|++...++..-.++-..+++++..+.-. .+++.|-+=.+++.+.+++++
T Consensus 624 Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~---~~~Isp~mW~ll~li~e~~~~------- 693 (1010)
T KOG1991|consen 624 TILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL---SKEISPIMWGLLELILEVFQD------- 693 (1010)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh---hcccCHHHHHHHHHHHHHHhh-------
Confidence 00000 0001 1122334444444443334444444444333211 122233222333333333322
Q ss_pred HHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhcc--CChhHHHH
Q 000143 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVRDG 1715 (2058)
Q Consensus 1638 ~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~--~~~~vR~~ 1715 (2058)
-|-+||++++|.+-+.+.-+... ... .+.+...++..+...+++ ....-.+.
T Consensus 694 ------------~~~dyf~d~~~~l~N~vt~g~~~-~~s-------------~~~y~~il~~i~~~~l~~e~~~D~d~~~ 747 (1010)
T KOG1991|consen 694 ------------DGIDYFTDMMPALHNYVTYGTPS-LLS-------------NPDYLQILLEIIKKVLTSENGEDSDCES 747 (1010)
T ss_pred ------------hhHHHHHHHHHHHhhheeeCchh-hhc-------------cchHHHHHHHHHHHHHcCCCCchHHHHH
Confidence 23458888999887666544332 100 011222233333333333 23445667
Q ss_pred HHHHHHHhHHHhchhHHHhHHHHHHHHHHhccC--CCHHHHHHHH
Q 000143 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD--ENESVRDAAL 1758 (2058)
Q Consensus 1716 al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d--~~~~VR~~a~ 1758 (2058)
++.++..+...++.....|++.++...+..+.. +....|..++
T Consensus 748 a~kLle~iiL~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~l 792 (1010)
T KOG1991|consen 748 ACKLLEVIILNCKGLLDQYIPLFLELALSRLTREVETSELRVMLL 792 (1010)
T ss_pred HHHHHHHHHHHhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHH
Confidence 889999998888777778888888888887766 3344454443
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-11 Score=165.04 Aligned_cols=274 Identities=21% Similarity=0.228 Sum_probs=181.4
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchH
Q 000143 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2058)
Q Consensus 1301 iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il 1380 (2058)
.++.|++.|.|+++.||+.++..|+.+. .+..++.|...| .++++.+|..|+.+|..+..... -.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~------~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~--------~~ 686 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETT------PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLP--------PA 686 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhc------chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccC--------ch
Confidence 3467778888999999998888877653 134555555444 66678899988888877754321 12
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 000143 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2058)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~ll 1460 (2058)
+.+...+.++ ++.+|..++.+++.+.. +. .+.++..+.|+++.||.+|..+|+.+-. .
T Consensus 687 ~~L~~~L~~~-d~~VR~~A~~aL~~~~~--~~---------~~~l~~~L~D~d~~VR~~Av~aL~~~~~----------~ 744 (897)
T PRK13800 687 PALRDHLGSP-DPVVRAAALDVLRALRA--GD---------AALFAAALGDPDHRVRIEAVRALVSVDD----------V 744 (897)
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHhhcc--CC---------HHHHHHHhcCCCHHHHHHHHHHHhcccC----------c
Confidence 3455556654 88889888887776531 11 1234567888899999988888876511 1
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHH
Q 000143 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540 (2058)
Q Consensus 1461 p~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp 1540 (2058)
+.+...+.|+++.+|.+++.+|+.+....+ ..++.|..+++|+++.||.+|+.+|+.++.. ..+.+
T Consensus 745 ~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~--------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~------~~~~~ 810 (897)
T PRK13800 745 ESVAGAATDENREVRIAVAKGLATLGAGGA--------PAGDAVRALTGDPDPLVRAAALAALAELGCP------PDDVA 810 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhccccc--------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc------chhHH
Confidence 345667888888888888888887754321 2255677788888888998888888887541 12234
Q ss_pred HHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhh
Q 000143 1541 TLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619 (2058)
Q Consensus 1541 ~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ 1619 (2058)
.+...+.|+++.+| .|+.+|+... -...++.|...++|+++.||..|+..++.+. .+ +.
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l~---------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~~--------~~ 870 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGAA---------ADVAVPALVEALTDPHLDVRKAAVLALTRWP---GD--------PA 870 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhcc---------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC---CC--------HH
Confidence 46667777777777 4666665411 0123466667777777777777777766541 11 13
Q ss_pred hhHHHHHhhCCCCHHHHHHHHHHHHH
Q 000143 1620 LLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2058)
Q Consensus 1620 ll~~L~~~l~d~~~~vR~~a~~aLg~ 1645 (2058)
..+.|..+++|+++.||..|.++|..
T Consensus 871 a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 871 ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 45666677777777777777777653
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-08 Score=129.40 Aligned_cols=496 Identities=12% Similarity=0.076 Sum_probs=315.4
Q ss_pred hccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcc-hHHHH
Q 000143 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK-VHAVV 1302 (2058)
Q Consensus 1224 ~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~-i~~iv 1302 (2058)
.|.+++..-|..++.-.+..+.. | ..+..+++-+.+.+... +. .+|.-+...+...+ +.+|. .--.+
T Consensus 40 ~L~s~~~~~kk~alKkvIa~mt~-G-~DvS~LF~dVvk~~~S~----d~--elKKLvYLYL~~ya----~~~pelalLaI 107 (746)
T PTZ00429 40 DLNGTDSYRKKAAVKRIIANMTM-G-RDVSYLFVDVVKLAPST----DL--ELKKLVYLYVLSTA----RLQPEKALLAV 107 (746)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHC-C-CCchHHHHHHHHHhCCC----CH--HHHHHHHHHHHHHc----ccChHHHHHHH
Confidence 34556666666666655555544 3 34455665555554431 12 56766666665554 33343 33457
Q ss_pred HHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHH
Q 000143 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382 (2058)
Q Consensus 1303 ~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~ 1382 (2058)
+.+.+-+.++++.+|-.+..+++.+.. +..-+++..-+.....+.++-+|+.|+.|+..+....+ +.+....+++.
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~---~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~ 183 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRV---SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKD 183 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHH
Confidence 888889999999999877777665431 22333333334444456789999999999999987543 33333467788
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh--hhHHhHH
Q 000143 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--QGVKLVL 1460 (2058)
Q Consensus 1383 L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~--~~v~~ll 1460 (2058)
|.+.+.|. |+.+.-.|+.++..+.+..+..++ .....+..++..+.+-++.-+-...+.+.. ..+. .....++
T Consensus 184 L~~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P~~~~e~~~il 258 (746)
T PTZ00429 184 LVELLNDN-NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAA---QRPSDKESAETLL 258 (746)
T ss_pred HHHHhcCC-CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCCCCcHHHHHHH
Confidence 88877766 899999999999888876554332 233445556667776666666655555532 2222 2235678
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhhC-hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHH
Q 000143 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2058)
Q Consensus 1461 p~Ll~~L~~~~~~~R~~a~~~Lg~la~~~-p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lv 1539 (2058)
..+...+.+.+..+-.+|+.++-.+.... +..+...+..+.+.++.+ ..+.+.+|..++..+..+..... ..+..-+
T Consensus 259 ~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~ 336 (746)
T PTZ00429 259 TRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNL 336 (746)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHH
Confidence 88888889889888888888888776543 233334444454555555 45678999999999988877432 2334446
Q ss_pred HHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh
Q 000143 1540 PTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618 (2058)
Q Consensus 1540 p~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~ 1618 (2058)
..++-...||.. ++ ..++.+..+. +......|+.-|.....+.+.+.++.+...+|.++.-+ ....+
T Consensus 337 ~~Ff~~~~Dp~y-IK~~KLeIL~~La-----ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~------~~~a~ 404 (746)
T PTZ00429 337 DSFYVRYSDPPF-VKLEKLRLLLKLV-----TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV------DSVAP 404 (746)
T ss_pred HhhhcccCCcHH-HHHHHHHHHHHHc-----CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC------hHHHH
Confidence 666667788864 55 5777665421 12334567777777778888999999999999998643 12345
Q ss_pred hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhc--ccCCChHHHhhHHHHHHHHHHHhchhHHHH
Q 000143 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL--KSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2058)
Q Consensus 1619 ~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L--~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~ 1696 (2058)
.++..|..++.+... +...++..+-.+.+.....+ +++.+...+ ..-.+...|.+.+|.+|+.+..... ...
T Consensus 405 ~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~--a~~ 478 (746)
T PTZ00429 405 DCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN--GKD 478 (746)
T ss_pred HHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh--HHH
Confidence 667777777766443 33345666767766544332 456665543 2224555788889999998775532 345
Q ss_pred hhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc-c-CCCHHHHHHHHHHHHHH
Q 000143 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-A-DENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1697 llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L-~-d~~~~VR~~a~~al~~l 1764 (2058)
++..++..+.+.++.||-.++.+...+......+.. ..+..+++.+ . +.+++||+.|.--.+.+
T Consensus 479 ~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~~~~----~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 479 IIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQGME----PQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 555556666667889999888888766655544333 3344444433 3 46789999887655543
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.1e-06 Score=107.27 Aligned_cols=549 Identities=13% Similarity=0.150 Sum_probs=314.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHH-HHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS-LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~-Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~ 1498 (2058)
++++.++..+..+.+.+-.++.+++..+...... ..+.+-.. +...++-+.-.+=..+++++..+.+.|++...+++.
T Consensus 312 ~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~-~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~fek~G~~s~~~l~ 390 (1176)
T KOG1248|consen 312 RLFSLFFTILESLIEELVQAASQSLKEILKESVT-VIDALCSKQLHSLLDYKFHAVWRFILQILSALFEKCGELSGPELT 390 (1176)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHhhhhcCHHHH
Confidence 4555555666666777777777777777654333 11111111 222232222122234678888888888887777666
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccC-ChhhHhhH
Q 000143 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV-DAPSLALL 1577 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~-~~~~l~~l 1577 (2058)
..+..+..+-.+++..-+..--+|+|.....++...+-.++|.=+. .+....+|.-+--+++ .+.+.. -.-....+
T Consensus 391 ~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~--~~s~~~~RsWLLPvLR-~~i~~A~La~F~~~i 467 (1176)
T KOG1248|consen 391 KTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLH--AESLSFTRSWLLPVLR-DYIIGASLAFFTEYI 467 (1176)
T ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhcc--ccccccchhHhHHHHH-HhhccCcHHHHHHHH
Confidence 6666655544444544455777788888888876666666665441 1111222321111111 000000 00012234
Q ss_pred HHHHHHh------hcCCC--H-HHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q 000143 1578 VPIVHRG------LRERS--A-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648 (2058)
Q Consensus 1578 lp~L~~~------L~d~s--~-~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~ 1648 (2058)
+|..... +++.. . ..+.-..++++.+-....-|-|+..-+..+-+.+...+... ++.|.+.+.+|..+++
T Consensus 468 vpla~sl~~K~~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~-~elr~~Ic~sL~~Lv~ 546 (1176)
T KOG1248|consen 468 VPLAMSLQLKAKKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKR-PELRETICNSLRMLVE 546 (1176)
T ss_pred HHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcc-hHhHHHHHHHHHHHHH
Confidence 4443322 22211 1 34455566666665554566777666667777777766644 4999999999999987
Q ss_pred hh------cc------cCccchHHHHHhhcccCCCh-----HHHhhHHHHHH-HHHHHhchhHHHHhhHHHHHhhccCC-
Q 000143 1649 GM------GE------ENFPDLVSWLLDALKSDNSN-----VERSGAAQGLS-EVLAALGTVYFEHILPDIIRNCSHQR- 1709 (2058)
Q Consensus 1649 ~l------g~------~~~~~llp~L~~~L~~d~~~-----~~R~~aa~~L~-~i~~~~g~~~l~~llp~Ll~~l~~~~- 1709 (2058)
.. ++ .+-..++|.+++.-.+.... ..|......+. ......+.+....+...+.+...+.+
T Consensus 547 ~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~ 626 (1176)
T KOG1248|consen 547 QNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDE 626 (1176)
T ss_pred cCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchh
Confidence 53 11 13456888888776543222 11222222221 22223333322333333333333333
Q ss_pred ---hhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH-----hcccchhchHHhHh
Q 000143 1710 ---ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPLLLPAVE 1781 (2058)
Q Consensus 1710 ---~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~-----~~~~~l~~llp~L~ 1781 (2058)
...+...+..+..++.+..+. ++..+....-...+.....++..+.+.+..+... +..+.++.+...+.
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~e~---~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ 703 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQTES---QVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLL 703 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhccccch---hHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHH
Confidence 233344455555555544432 2222232222223344677888888888877655 22334455566666
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhh---HHHHHHHHHHhhcCCCH
Q 000143 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK---RNEVLAALYMVRSDVSL 1858 (2058)
Q Consensus 1782 ~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~---~~~vL~~L~~~~~D~~~ 1858 (2058)
+.+++...-.|...+.++..++... +.+. ....++.+.....+.+.
T Consensus 704 ds~qs~~~~~~~~rl~~L~~L~~~~-------------------------------~~e~~~~i~k~I~EvIL~~Ke~n~ 752 (1176)
T KOG1248|consen 704 DSFQSSSSPAQASRLKCLKRLLKLL-------------------------------SAEHCDLIPKLIPEVILSLKEVNV 752 (1176)
T ss_pred HHHhccchHHHHHHHHHHHHHHHhc-------------------------------cHHHHHHHHHHHHHHHHhcccccH
Confidence 6666666666777777666664321 1111 11223333333467777
Q ss_pred HHHHHHHHHHHHHH--hhC---hhh-HHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh----CcchhhchHHHH
Q 000143 1859 SVRQAALHVWKTIV--ANT---PKT-LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL----GERVLPSIIPIL 1928 (2058)
Q Consensus 1859 ~VR~aA~~~l~~lv--~~~---~~~-l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~l----g~~~l~~llp~L 1928 (2058)
.-|+.|.+++..+. ... +.. ....+..++..|...+..+...++...+-+++.++... +...+++++..+
T Consensus 753 ~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V 832 (1176)
T KOG1248|consen 753 KARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMV 832 (1176)
T ss_pred HHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 88888888887776 221 110 13344445555554444444444443344555555443 344678888888
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhhHHHHHHH
Q 000143 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPT 2007 (2058)
Q Consensus 1929 ~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~ 2007 (2058)
.-.+.+..++++.+|+..+.-.+..++...+.+|.+.++|.+.....|....+|.....-|..+++..|...+..++|.
T Consensus 833 ~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pe 911 (1176)
T KOG1248|consen 833 CLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPE 911 (1176)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHH
Confidence 8888999999999999999988888988889999999999999999999999999999999999999998877777774
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-11 Score=142.14 Aligned_cols=253 Identities=12% Similarity=0.039 Sum_probs=192.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
.-++.+...+.|++..||..+..+|+.+.. ..+++.+...+.+++..+|..++.+||.+...... ...
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~ 90 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDN 90 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHH
Confidence 345567778899999999999999887632 35566777778899999999999999998642110 235
Q ss_pred HHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhH
Q 000143 1500 IVPKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALL 1577 (2058)
Q Consensus 1500 Iip~L~~~-L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~l 1577 (2058)
.++.|... ++|+++.||..|+.+|+.++..-.. .....++.+...+.|++..|| .++.+|+... -...
T Consensus 91 a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~---------~~~a 160 (280)
T PRK09687 91 VFNILNNLALEDKSACVRASAINATGHRCKKNPL-YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN---------DEAA 160 (280)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC---------CHHH
Confidence 66777766 7899999999999999998643221 124566677788889999998 5777776421 1236
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccc
Q 000143 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 1657 (2058)
Q Consensus 1578 lp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~ 1657 (2058)
++.|...++|+++.+|..|+..+|.+.. + .+...+.|...+.|+++.||..|+.+||.+. . +.
T Consensus 161 i~~L~~~L~d~~~~VR~~A~~aLg~~~~--~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~---~~ 223 (280)
T PRK09687 161 IPLLINLLKDPNGDVRNWAAFALNSNKY--D--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRK----D---KR 223 (280)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCC--C--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccC----C---hh
Confidence 7889999999999999999999987722 1 2357788999999999999999999998854 2 47
Q ss_pred hHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhc-cCChhHHHHHHHHHH
Q 000143 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCS-HQRASVRDGYLTLFK 1721 (2058)
Q Consensus 1658 llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~-~~~~~vR~~al~~l~ 1721 (2058)
.+|.|++.|.++. +|..++.+||++. . +..+|.+...+. +++..++..+...+.
T Consensus 224 av~~Li~~L~~~~---~~~~a~~ALg~ig----~---~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 224 VLSVLIKELKKGT---VGDLIIEAAGELG----D---KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHHHcCCc---hHHHHHHHHHhcC----C---HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 8899999988533 5777888888753 3 367888888776 678889888777664
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-05 Score=103.42 Aligned_cols=378 Identities=15% Similarity=0.168 Sum_probs=210.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhc--cCC--cc----hH
Q 000143 1228 TNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLA--KDD--PK----VH 1299 (2058)
Q Consensus 1228 ~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~--~~~--p~----i~ 1299 (2058)
..+.+|.....|...++...-++.|+.+++....+|.... . ..--+++.+|-.+++.+. ..+ .. +.
T Consensus 101 ~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~----~--~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~ 174 (1010)
T KOG1991|consen 101 VPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQD----A--NHVYGALLCLYQLFKTYEWKKDEERQPLGEAVE 174 (1010)
T ss_pred CchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcc----h--hhHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 3566787777777788877667899999999999987631 1 233567888888887543 111 11 22
Q ss_pred HHHHHH----HhhhCCCCHH---HHHHHHHhhHhhHhhc-------ccchHHHHHHHHHHHhcC--------C-------
Q 000143 1300 AVVDKL----LDVLNTPSEA---VQRAVSSCLSPLMQSM-------QDEAPTLVSRLLDQLMKS--------D------- 1350 (2058)
Q Consensus 1300 ~iv~~L----l~~L~~~~~~---V~~av~~~L~~l~~~~-------~~~~~~~v~~Ll~~L~~~--------~------- 1350 (2058)
..+|.+ .+.+..++.. .++.+.+..-.++..- .+.+...+...+..+... +
T Consensus 175 ~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~ 254 (1010)
T KOG1991|consen 175 ELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSW 254 (1010)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccc
Confidence 333333 3344555533 3333444332222211 122334444444333211 0
Q ss_pred -CHHHHHHHHHHHHHHHhhhCccccch--h---------chHHHHHHH-HhCCCCHHH-----HHHHHHHHHHHHHHhc-
Q 000143 1351 -KYGERRGAAFGLAGVVKGFGISSLKK--Y---------GIAATLREG-LADRNSAKR-----REGALLAFECLCEKLG- 1411 (2058)
Q Consensus 1351 -~~~vR~~Aa~~L~~l~~~~g~~~l~~--~---------~il~~L~~~-l~~~~~~~~-----R~~al~al~~L~~~lg- 1411 (2058)
=|...+-|++.+.++.+..|...... + ...+.+.+. ++.-..|+. -+.-..++..+-....
T Consensus 255 ~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~ 334 (1010)
T KOG1991|consen 255 PWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSH 334 (1010)
T ss_pred cchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccH
Confidence 15577889999999999888654332 1 111111111 110001211 0111122223322221
Q ss_pred ----ccchhhHHHHHHHH-HH--HcCC---------CCHHHHH-------------HHHHHHHHHHHhhhhhhHHhHHHH
Q 000143 1412 ----RLFEPYVIQMLPLL-LV--AFSD---------QVVAVRE-------------AAECAARAMMSQLSAQGVKLVLPS 1462 (2058)
Q Consensus 1412 ----~~~~p~l~~llp~L-l~--~l~D---------~~~~VR~-------------aA~~al~~l~~~l~~~~v~~llp~ 1462 (2058)
+.++|++.-++..+ +. +++| +.+.+|+ +|...+..++++-+++.++.+++.
T Consensus 335 ~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F 414 (1010)
T KOG1991|consen 335 ASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSF 414 (1010)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHH
Confidence 35677776544322 22 2333 3445554 677777777777777777888888
Q ss_pred HHHhcc--------CCChHHHHHHHHHHHHHHhhChhh--Hhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-hc
Q 000143 1463 LLKGLE--------DKAWRTKQSSVQLLGAMAYCAPQQ--LSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS-VI 1530 (2058)
Q Consensus 1463 Ll~~L~--------~~~~~~R~~a~~~Lg~la~~~p~~--l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~-~~ 1530 (2058)
+.+.+. ..+.|.+.+|+..+|+++....+. ....+ .-+++.++..++++-...|..||+.++.+++ .+
T Consensus 415 ~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df 494 (1010)
T KOG1991|consen 415 IVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDF 494 (1010)
T ss_pred HHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccC
Confidence 777665 246888999999999999643211 11111 1456777888899999999999999999994 34
Q ss_pred Cchh-HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhC
Q 000143 1531 KNPE-IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVT 1608 (2058)
Q Consensus 1531 ~~~~-i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~ 1608 (2058)
.++. +...+.... ++|. |.+-.||..|+-++..+.....
T Consensus 495 ~d~~~l~~ale~t~---------------------------------------~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 495 KDPNNLSEALELTH---------------------------------------NCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred CChHHHHHHHHHHH---------------------------------------HHhccCCcCchhhHHHHHHHHHHhcch
Confidence 4332 122222222 3333 4444566666666666655322
Q ss_pred CC-CchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1609 EP-KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1609 ~~-~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
.. ..+.++++.+|..++.+.++-+-+. ....+..++..++++
T Consensus 536 ~~~e~~~~hvp~~mq~lL~L~ne~End~---Lt~vme~iV~~fseE 578 (1010)
T KOG1991|consen 536 QADEKVSAHVPPIMQELLKLSNEVENDD---LTNVMEKIVCKFSEE 578 (1010)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHHh
Confidence 21 2367888888888888776543332 233455555555555
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-09 Score=133.17 Aligned_cols=334 Identities=18% Similarity=0.155 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHHHHHhhhC---ccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHH
Q 000143 1352 YGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLV 1427 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g---~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~-~llp~Ll~ 1427 (2058)
...+..+.+.+..+...-. ...+....++|.+.+.+....++..+..|..++..|+.+-...-.-++. ..+|.+..
T Consensus 80 ~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~ 159 (514)
T KOG0166|consen 80 PQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQ 159 (514)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHH
Confidence 4445555555555443221 1111223678888888876668999999999999999865543333332 57899999
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhhhh---hH-HhHHHHHHHhccCCCh-HHHHHHHHHHHHHHhhC-hhhHhhhhhhHH
Q 000143 1428 AFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAW-RTKQSSVQLLGAMAYCA-PQQLSQCLPKIV 1501 (2058)
Q Consensus 1428 ~l~D~~~~VR~aA~~al~~l~~~l~~~---~v-~~llp~Ll~~L~~~~~-~~R~~a~~~Lg~la~~~-p~~l~~~L~~Ii 1501 (2058)
++..++..||+.|.+|++.++..-+.. .+ -.++++++..+...+. ...+.+..+|..++.+. |..-...+..++
T Consensus 160 Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iL 239 (514)
T KOG0166|consen 160 LLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPIL 239 (514)
T ss_pred HhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 999999999999999999998665542 23 4678888888876553 66778899999999886 444445567899
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch--h-H-HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChh--hH
Q 000143 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--E-I-ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAP--SL 1574 (2058)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~--~-i-~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~--~l 1574 (2058)
|.|..++.+.+++|..-||||+..+.+...+. . + ..++|.|...+..++..++ .|+.++|.+......... .-
T Consensus 240 p~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~ 319 (514)
T KOG0166|consen 240 PALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVIN 319 (514)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHh
Confidence 99999999999999999999999998754322 1 1 5678999999998887776 688888762111111100 11
Q ss_pred hhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh-hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1575 ALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1575 ~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~-~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
...+|.|...+. .+...+|++||.+++|++. +.++.+...++ .++|.|..++...+..+|..|+.|++.+...-..
T Consensus 320 ~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~ 397 (514)
T KOG0166|consen 320 SGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTP 397 (514)
T ss_pred cChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCH
Confidence 235788888777 4555699999999999987 55555544444 7899999999999999999999999998865443
Q ss_pred c---Cc--cchHHHHHhhcccCCChHHHhhHHHHHHHHHHH
Q 000143 1653 E---NF--PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2058)
Q Consensus 1653 ~---~~--~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~ 1688 (2058)
+ |+ ..+++.+.+.|. ..+...-..+..++..+...
T Consensus 398 ~qi~yLv~~giI~plcdlL~-~~D~~ii~v~Ld~l~nil~~ 437 (514)
T KOG0166|consen 398 EQIKYLVEQGIIKPLCDLLT-CPDVKIILVALDGLENILKV 437 (514)
T ss_pred HHHHHHHHcCCchhhhhccc-CCChHHHHHHHHHHHHHHHH
Confidence 3 22 358888888885 34443455666777666543
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-06 Score=110.42 Aligned_cols=636 Identities=17% Similarity=0.167 Sum_probs=339.2
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHH--------HHHhhcC--C
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYG--Y 1126 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~--------~~w~~~~--~ 1126 (2058)
+.+..+|.+.+|+|.++|.+|+.+|...... ..+-..+.++ .+.++..-..|+.|. ..|..+. +
T Consensus 4 ~~ii~~L~~~ls~d~~vr~~AE~~l~qle~~-----~~f~~aL~~v-a~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~f 77 (1005)
T KOG2274|consen 4 QAIIELLSGSLSADQNVRSQAETQLKQLELT-----EGFGVALAEV-AANKDASLPLRQIALVLLKRYIEKHWSPNFEAF 77 (1005)
T ss_pred HHHHHHHHhhcCCChhHHHHHHHHHhccccc-----hHHHHHHHHH-HhCcccCchHHHHHHHHHHHHHHHhCCChHhhc
Confidence 4577889999999999999999999987511 1122233333 244556666777764 3475421 1
Q ss_pred C----CCCC----H-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHH
Q 000143 1127 D----FGTD----Y-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2058)
Q Consensus 1127 ~----~~~~----~-~~ll~~l~~~~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~ 1196 (2058)
. ...+ + ..+++.+.+++..+|.+++.++..++. .+|+.|++++..+.+++.. .+...-++
T Consensus 78 r~~~~~~e~~K~~IRe~Ll~~l~~sn~ki~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~----------~n~n~i~~ 147 (1005)
T KOG2274|consen 78 RYPLIVSEEVKALIREQLLNLLDDSNSKIRSAVAYAISSIAAVDYPDEWPELVPFILKLLSS----------GNENSIHG 147 (1005)
T ss_pred cCCCcccHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHhccCchhhHHHHHHHHHHHhc----------cchhhhhh
Confidence 1 1111 3 566677789999999999999999975 5899999999999987642 22346678
Q ss_pred HHHHHHHhhhhhCCC--------ChHHHHHHHHHhhccCCCHHHHHH-----HHHHHHHHHHhhCcc-------chhhHH
Q 000143 1197 IALALHSAADVLRTK--------DLPVIMTFLISRALADTNADVRGR-----MLNAGIMIIDKHGRD-------NVSLLF 1256 (2058)
Q Consensus 1197 ~~~al~~l~~~~~~~--------~~~~l~~~Li~~~L~d~~~~VR~~-----al~a~~~~i~~~g~~-------~~~~Ll 1256 (2058)
++.++..+..-...+ ..+.+..... .....+...|.. ....+...+..++.. .+..++
T Consensus 148 am~vL~el~~ev~~ee~~~~~~~~l~~m~~~f~--~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l 225 (1005)
T KOG2274|consen 148 AMRVLAELSDEVDVEEMFFVGPVSLAEMYRIFA--LTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQIL 225 (1005)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhhhhhhh--hccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 888888876543211 1222222221 112222222222 223344445444321 233344
Q ss_pred HH----HHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccC-CcchHHHHHHHHhhhCC--------------------
Q 000143 1257 PI----FENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNT-------------------- 1311 (2058)
Q Consensus 1257 ~~----l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~-~p~i~~iv~~Ll~~L~~-------------------- 1311 (2058)
+. |+..++.+.. .+...|.....++..+.+.++.. .|++..+++...+.+..
T Consensus 226 ~~~~~~l~h~l~~~~g---~~~~~~~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~ 302 (1005)
T KOG2274|consen 226 NQFMDILEHPLQRNDG---SDFSLRMEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDAR 302 (1005)
T ss_pred HHHHHHHhhhhccccc---chHHHHHHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccc
Confidence 44 4444433222 22256777777777777766543 23444333333322200
Q ss_pred -CCHHHHHHHHHh-------hHhhHh------hcccchHHHHHHHH--HHHh----------------cC-CCHHHHHHH
Q 000143 1312 -PSEAVQRAVSSC-------LSPLMQ------SMQDEAPTLVSRLL--DQLM----------------KS-DKYGERRGA 1358 (2058)
Q Consensus 1312 -~~~~V~~av~~~-------L~~l~~------~~~~~~~~~v~~Ll--~~L~----------------~~-~~~~vR~~A 1358 (2058)
.+...+..+-.| +..++. .+....++.+..+. .++. ++ +.+..|..+
T Consensus 303 ~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~ 382 (1005)
T KOG2274|consen 303 YDSDPEEKSVETLVIQIVEFLSTIVTNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISV 382 (1005)
T ss_pred cCCchhhhChHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhH
Confidence 000011111111 111111 11111222221111 1111 11 124667777
Q ss_pred HHHHHHHHhhhCccccchhchHHHHHH---------HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHc
Q 000143 1359 AFGLAGVVKGFGISSLKKYGIAATLRE---------GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2058)
Q Consensus 1359 a~~L~~l~~~~g~~~l~~~~il~~L~~---------~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l 1429 (2058)
...+-.++..+|...+. .+...... .+.++..|...++.+.+-+... .++....++..+.-.+...+
T Consensus 383 rd~~~~v~~~f~~~~i~--~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l 458 (1005)
T KOG2274|consen 383 RDLLLEVITTFGNEGIN--PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGL 458 (1005)
T ss_pred HHHHHHHHHhccchhhh--HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhc
Confidence 66677777777765543 22222111 1223334556665555544443 23323444444444444444
Q ss_pred CC-CCHHHHHHHHHHHHHHHHhh--hhhhHHhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHH
Q 000143 1430 SD-QVVAVREAAECAARAMMSQL--SAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505 (2058)
Q Consensus 1430 ~D-~~~~VR~aA~~al~~l~~~l--~~~~v~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~ 1505 (2058)
.- +.|..--.+..++..++... .+.-...++...+..+. +.....|..|+.++...+ .++-+.+.+|.|+..|.
T Consensus 459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~ 536 (1005)
T KOG2274|consen 459 VYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLL 536 (1005)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHH
Confidence 33 34444446666666655442 22222444555555555 455667888888777654 56678888999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhcCc-------hhHHhHHHHHHhccCCCChh--HHHHHHHHHhccccccCChhhHhh
Q 000143 1506 EVLTDTHPKVQSAGQTALQQVGSVIKN-------PEIASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNTVDAPSLAL 1576 (2058)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~-------~~i~~lvp~Ll~~l~d~~~~--vr~al~~L~~~~f~~~~~~~~l~~ 1576 (2058)
.+..+...+|-....++|...++.-.. ...+.++..+.+..+||.-. ++.++..+.+ .....+|....
T Consensus 537 qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q---~~~~~g~m~e~ 613 (1005)
T KOG2274|consen 537 QLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ---IAANYGPMQER 613 (1005)
T ss_pred HHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH---HHHhhcchHHH
Confidence 999999999999999999888875221 11134445556667788321 1345555554 11223455566
Q ss_pred HHHHHHHhhcCCC----HHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHh-hCCCCHHHHHHHHHHHHHHHHhhc
Q 000143 1577 LVPIVHRGLRERS----AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV-LVDPIPEVRSVAARAIGSLIRGMG 1651 (2058)
Q Consensus 1577 llp~L~~~L~d~s----~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~-l~d~~~~vR~~a~~aLg~l~~~lg 1651 (2058)
.+|.+...+..+. ......+..++..+.+. +.+.--.......+|.+.++ +...+-++-..+-+||.++...--
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~-tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN-TPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc-CCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 7888888776544 45566677788777763 33222222444567777665 444556677788888888886522
Q ss_pred cc----------CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhccC-ChhHHHHHH
Q 000143 1652 EE----------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ-RASVRDGYL 1717 (2058)
Q Consensus 1652 ~~----------~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~~~-~~~vR~~al 1717 (2058)
++ .+-.+|..+-+.|..+.+...-..+..-+..++...|.+ .++.++..++..+... ...+-+..+
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQsLi 772 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQSLI 772 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 21 122566666555543333211111122234444445544 3455666665555443 444444445
Q ss_pred HHHHHh
Q 000143 1718 TLFKYL 1723 (2058)
Q Consensus 1718 ~~l~~l 1723 (2058)
..|..+
T Consensus 773 ~VfahL 778 (1005)
T KOG2274|consen 773 MVFAHL 778 (1005)
T ss_pred HHHHHH
Confidence 544444
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-07 Score=116.09 Aligned_cols=402 Identities=16% Similarity=0.196 Sum_probs=253.3
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhh-hhhhHHH
Q 000143 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVP 1502 (2058)
Q Consensus 1425 Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~-~L~~Iip 1502 (2058)
++.++.+.+...-..++++++.++....+..+ ..+.+.+..+|.+++..+|..++..++.++.+....... .=..+++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 77788877776667888999999988887764 888899999999999999999999999998765432211 1147899
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHH
Q 000143 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2058)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~ 1582 (2058)
.+..++.|++..|.+.|..+|..++.. .+.++.+++ + ...+.+.
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~--~~~~~~l~~--------~--------------------------~~~~~L~ 166 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASH--PEGLEQLFD--------S--------------------------NLLSKLK 166 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCC--chhHHHHhC--------c--------------------------chHHHHH
Confidence 999999999999999999999999873 122222110 0 0133344
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh--hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh-cccCc--cc
Q 000143 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GEENF--PD 1657 (2058)
Q Consensus 1583 ~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~--~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l-g~~~~--~~ 1657 (2058)
..+...+..+|..+.+++..++.. . .+...+.. .+++.+...+.+++.-++..+.+.++.++..- |-+|+ ..
T Consensus 167 ~l~~~~~~~vR~Rv~el~v~i~~~--S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~g 243 (503)
T PF10508_consen 167 SLMSQSSDIVRCRVYELLVEIASH--S-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQG 243 (503)
T ss_pred HHHhccCHHHHHHHHHHHHHHHhc--C-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCC
Confidence 444444556777788888887763 2 23333433 37888888888888889999999999998621 11122 23
Q ss_pred hHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHH
Q 000143 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2058)
Q Consensus 1658 llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ 1737 (2058)
+++.+.+.+.+..+.. |..+. .-.+.+..++.++..-...+....+.
T Consensus 244 i~~~L~~~l~~~~~dp-~~~~~--------------------------------~l~g~~~f~g~la~~~~~~v~~~~p~ 290 (503)
T PF10508_consen 244 IFDKLSNLLQDSEEDP-RLSSL--------------------------------LLPGRMKFFGNLARVSPQEVLELYPA 290 (503)
T ss_pred HHHHHHHHHhccccCC-cccch--------------------------------hhhhHHHHHHHHHhcChHHHHHHHHH
Confidence 4444444443221110 11111 11233355555555433344444566
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc---------cchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhC
Q 000143 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYAT---------TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1808 (2058)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~---------~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g 1808 (2058)
++..+...+...++..+..|+++++.+.....+ ..++.++..+-....+....+|..+++.++.++..
T Consensus 291 ~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~--- 367 (503)
T PF10508_consen 291 FLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS--- 367 (503)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc---
Confidence 777777778888899999999999987643221 12233444444445556677899999999998632
Q ss_pred CcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhH--HHH
Q 000143 1809 TSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM--PVL 1886 (2058)
Q Consensus 1809 ~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l--~~L 1886 (2058)
..+..........+...+.++...... .++.....+-+.+|.++.++|..++. .+|..+.+. |.+
T Consensus 368 ---------~~~~~~~~i~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~~-~~Wg~~~i~~~~gf 434 (503)
T PF10508_consen 368 ---------GTDRQDNDILSITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALAA-QPWGQREICSSPGF 434 (503)
T ss_pred ---------CCCCchHHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHhc-CHHHHHHHHhCccH
Confidence 011000001122333345555444432 23333566668999999999999986 467666654 455
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1887 MNTLISSLASSSSERRQVAGRALGELVR 1914 (2058)
Q Consensus 1887 ~~~l~~~L~~~~~~~R~~A~~~Lg~L~~ 1914 (2058)
++.++..-.+++.+.+..=.+++..+++
T Consensus 435 ie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 435 IEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred HhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 6655544444555555555555555553
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.00044 Score=87.76 Aligned_cols=501 Identities=15% Similarity=0.169 Sum_probs=258.9
Q ss_pred HhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 000143 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1409 ~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~ 1488 (2058)
.+++.|+.++..-++...+.+.-++|..+....++ + ++ -..|...|+.+.-.+..
T Consensus 223 DiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~-~-------------~l-----------~~lka~ICEi~~LY~~k 277 (960)
T KOG1992|consen 223 DIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEA-T-------------VL-----------DKLKAQICEIFNLYATK 277 (960)
T ss_pred cchHHHHhhHHHHHHHHHHHHhccCcccccCcccc-c-------------HH-----------HHHHHHHHHHHHHHHHh
Confidence 34567788888888888877765554433210000 0 00 12355667777777777
Q ss_pred ChhhHhhhhhhHHHHHHHHhcCCCHHHH--HHHHHHHHHHHhhcCchhH------HhHHHHHHhccCCCChhHHHHHHHH
Q 000143 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQ--SAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHTKYSLDIL 1560 (2058)
Q Consensus 1489 ~p~~l~~~L~~Iip~L~~~L~D~~~~VR--~aA~~aL~~l~~~~~~~~i------~~lvp~Ll~~l~d~~~~vr~al~~L 1560 (2058)
.++.+.+++++++...-.++.+..+..| .-++.|+.-+..+.+-+++ +.++..+.+...=|+-..|+.-..+
T Consensus 278 YeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeEl 357 (960)
T KOG1992|consen 278 YEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEEL 357 (960)
T ss_pred hHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHH
Confidence 7888889999999888888876554444 3455666666666655443 3344444444433433333211111
Q ss_pred HhccccccCChhhHhhHHHHHHHhhcCCCHHH-HHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHH-hhCC--CCHHHH
Q 000143 1561 LQTTFVNTVDAPSLALLVPIVHRGLRERSAET-KKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK-VLVD--PIPEVR 1636 (2058)
Q Consensus 1561 ~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~v-r~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~-~l~d--~~~~vR 1636 (2058)
| -..-+..+.+-++..+.++ |+.||+.+..+++.. +. .+.+.+..-+..++. ...+ .+|.-.
T Consensus 358 ----F--------ED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~f-e~-~vt~v~~~~v~~~l~~y~~nPS~nWk~k 423 (960)
T KOG1992|consen 358 ----F--------EDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNF-EG-QVTGVFSSEVQRLLDQYSKNPSGNWKKK 423 (960)
T ss_pred ----h--------ccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHh-cc-hhHHHHHHHHHHHHHHhccCCCcccccc
Confidence 0 0113445566666555444 566888999999865 32 222222223333332 2233 478888
Q ss_pred HHHHHHHHHHHHhhccc---------------Cc-cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHH
Q 000143 1637 SVAARAIGSLIRGMGEE---------------NF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPD 1700 (2058)
Q Consensus 1637 ~~a~~aLg~l~~~lg~~---------------~~-~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~ 1700 (2058)
..++.-+.+++...+.. +| ..++|.|...=. ...+..+..+..-+-.+-+.+|++++-.++|.
T Consensus 424 d~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~v-n~~pilka~aIKy~~~FR~ql~~~~lm~~~p~ 502 (960)
T KOG1992|consen 424 DRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNV-NEFPILKADAIKYIYTFRNQLGKEHLMALLPR 502 (960)
T ss_pred chhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCcc-ccccchhhcccceeeeecccCChHHHHHHHHH
Confidence 88887777777643321 11 234444422000 12232344444434444456777788889999
Q ss_pred HHHhhccCChhHHHHHHHHHHHhHHHhch---------hHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1701 IIRNCSHQRASVRDGYLTLFKYLPRSLGV---------QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1701 Ll~~l~~~~~~vR~~al~~l~~la~~~g~---------~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~ 1771 (2058)
+.+.+..+..-|-..+..++..+...-++ ...||...++..+.+.+.-+...--+..++|+-+++......
T Consensus 503 li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~ 582 (960)
T KOG1992|consen 503 LIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSA 582 (960)
T ss_pred HHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHh
Confidence 99999999999999999988877654333 456777777777777665332211122333433333222222
Q ss_pred c---hhchHHhHhhhc----CCC-CHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHH
Q 000143 1772 S---LPLLLPAVEDGI----FND-NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843 (2058)
Q Consensus 1772 ~---l~~llp~L~~~l----~d~-~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~ 1843 (2058)
. .+.+++.|.+.+ +++ ++..-..-.+.+|-++... +..++.. .......+..++
T Consensus 583 i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t-~~~~~~~-----------vs~~e~aL~p~f------ 644 (960)
T KOG1992|consen 583 IIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKT-CKANPSA-----------VSSLEEALFPVF------ 644 (960)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH-hccCchH-----------HHHHHHHHHHHH------
Confidence 1 122333333222 222 2333444455556554332 1111100 000001111111
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh----hhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc
Q 000143 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTP----KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919 (2058)
Q Consensus 1844 ~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~----~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~ 1919 (2058)
-..+.+.....--.+..+++.++.... ..+.+++|.+++.-+......- -+..+.+..+.+.....
T Consensus 645 ------q~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNi----palvrLl~aflk~g~~~ 714 (960)
T KOG1992|consen 645 ------QTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNI----PALVRLLQAFLKTGSQI 714 (960)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCc----HHHHHHHHHHHhcCchh
Confidence 111111112222334556666665433 3444444443322211111110 12333344444432221
Q ss_pred -----hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCH
Q 000143 1920 -----VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2058)
Q Consensus 1920 -----~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~ 1979 (2058)
.++.++..+.+.+.++..+ .+| .+-+..++...+...+.||+.++...+.+.++.+..
T Consensus 715 ~~~~~~l~~iLGifqkLiaSka~D-h~G-F~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT 777 (960)
T KOG1992|consen 715 VEAADKLSGILGIFQKLIASKAND-HHG-FYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKT 777 (960)
T ss_pred hcccccchhHHHHHHHHhcCcccc-hhH-HHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCc
Confidence 2456777777777655432 333 344777888888888889999999999999876643
|
|
| >KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-05 Score=100.71 Aligned_cols=628 Identities=18% Similarity=0.204 Sum_probs=313.0
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcCCC-
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYD- 1127 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~~~- 1127 (2058)
+.+...|....+||+.+|..++++|+.....+ .+ ...++..+ +...-|+.+|-.|.. -|...+..
T Consensus 5 e~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~--~y--~l~lL~Lv--~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~ 78 (960)
T KOG1992|consen 5 ETLANYLLQTLSPDPSVRKPAERALRSLEGQQ--NY--PLLLLNLV--ANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSP 78 (960)
T ss_pred HHHHHHHHhcCCCCCccCchHHHHHHHhccCC--Cc--hHHHHHHH--hccCcChhHHHHHHHHHHHHHHhccCcCCCCc
Confidence 46777888899999999999999999875221 11 12222222 222336666655432 46543322
Q ss_pred --CC----CCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhh-----------c----C--C
Q 000143 1128 --FG----TDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRD-----------I----G--L 1182 (2058)
Q Consensus 1128 --~~----~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~-----------l----~--~ 1182 (2058)
.. +.+ ..++...-+....++....+++.-+++. .|+.|+.+++.|.+.+... + + .
T Consensus 79 ~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R 158 (960)
T KOG1992|consen 79 IKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYR 158 (960)
T ss_pred cccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcC
Confidence 11 223 3344444566788999999999988854 5777777777776554310 0 0 0
Q ss_pred CCCCCCCCchh-----------------------------------hHHHHHHHHHhhhhhCCCChHHH--------HHH
Q 000143 1183 GGDNVDAGWLG-----------------------------------RQGIALALHSAADVLRTKDLPVI--------MTF 1219 (2058)
Q Consensus 1183 ~~~~~~~~~~~-----------------------------------R~~~~~al~~l~~~~~~~~~~~l--------~~~ 1219 (2058)
....++.-|.. --++...+..+...+..+++|.+ +..
T Consensus 159 ~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~ 238 (960)
T KOG1992|consen 159 PEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGA 238 (960)
T ss_pred cccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHH
Confidence 00000111110 00111111122222333333322 111
Q ss_pred HH---H---hhccCC--C----HHHHHHHHHHHHHHHHhhCc---cchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHH
Q 000143 1220 LI---S---RALADT--N----ADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFT 1284 (2058)
Q Consensus 1220 Li---~---~~L~d~--~----~~VR~~al~a~~~~i~~~g~---~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~L 1284 (2058)
+. . ..+.+. + ..+|..+++........+.. ..+++++...+++|.. .+.+..+|.+..+|+.+|
T Consensus 239 F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~-~s~~~kyD~Lvs~Al~FL 317 (960)
T KOG1992|consen 239 FHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVS-TSPDTKYDYLVSKALQFL 317 (960)
T ss_pred HHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHH
Confidence 11 0 112221 1 13444555554444444432 3466777778888887 455567788989999999
Q ss_pred HHHHh--HhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhh------cccchHHHHHHHHHHHhcCCCHHHHH
Q 000143 1285 GALAK--HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS------MQDEAPTLVSRLLDQLMKSDKYGERR 1356 (2058)
Q Consensus 1285 g~La~--~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~------~~~~~~~~v~~Ll~~L~~~~~~~vR~ 1356 (2058)
..+++ |+...- .-+.++..+.+.. |++.+.-. +.++-.+|++.-+ ..+|-..-|+
T Consensus 318 t~V~~r~~y~~~F-~~~~vl~~i~e~V-------------vlpN~~lR~eDeElFED~pleYiRRDl---EGsDvdTRRR 380 (960)
T KOG1992|consen 318 TSVSRRPHYAELF-EGENVLAQICEKV-------------VLPNLILREEDEELFEDNPLEYIRRDL---EGSDVDTRRR 380 (960)
T ss_pred HHHHhhhhhHhhh-cchHHHHHHHHhh-------------cccccccchhhHHHhccCHHHHHHHhc---ccCCcchhHH
Confidence 99985 332100 0112222222211 22222111 1112233444333 2333334466
Q ss_pred HHHHHHHHHHhhhCccccchhchHHH-----HHHHHhC-CCCHHHHHHHHHHHHHHHHHh-----c-----c--cchh-h
Q 000143 1357 GAAFGLAGVVKGFGISSLKKYGIAAT-----LREGLAD-RNSAKRREGALLAFECLCEKL-----G-----R--LFEP-Y 1417 (2058)
Q Consensus 1357 ~Aa~~L~~l~~~~g~~~l~~~~il~~-----L~~~l~~-~~~~~~R~~al~al~~L~~~l-----g-----~--~~~p-~ 1417 (2058)
+|+.-+.++.+.+..... .++.. +.+...+ ..||+..+.++..+..++-.- | . .... +
T Consensus 381 ~a~dlvrgL~~~fe~~vt---~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff 457 (960)
T KOG1992|consen 381 AAIDLVRGLCKNFEGQVT---GVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFF 457 (960)
T ss_pred HHHHHHHHHHHHhcchhH---HHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHH
Confidence 677777778777633222 22222 2223333 458999999998888887542 1 0 1222 3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh---------
Q 000143 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC--------- 1488 (2058)
Q Consensus 1418 l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~--------- 1488 (2058)
..+++|.|...-..+.|.++..+.+=+-.+-..+++...-..+|.+...+..+..-+-.-|+.++..+...
T Consensus 458 ~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if 537 (960)
T KOG1992|consen 458 ANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIF 537 (960)
T ss_pred HHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCcccccc
Confidence 45677887765556678888777665555556667777788899999999887655444444444443322
Q ss_pred ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhccc
Q 000143 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2058)
Q Consensus 1489 ~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f 1565 (2058)
.+..+.++...++..+.+.++-+...=-+-..+|+.++....++ |+...+++.|.
T Consensus 538 ~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lt---------------------- 595 (960)
T KOG1992|consen 538 GAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLT---------------------- 595 (960)
T ss_pred chhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHH----------------------
Confidence 12345555555555555544433221112222333333322221 11111111111
Q ss_pred cccCChhhHhhHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhh--CCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHH
Q 000143 1566 VNTVDAPSLALLVPIVHRGLRER-SAETKKKAAQIVGNMCSLV--TEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA 1642 (2058)
Q Consensus 1566 ~~~~~~~~l~~llp~L~~~L~d~-s~~vr~~A~~~l~~L~~~l--~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~a 1642 (2058)
.++....+++ ++.--..-.+.+|.+.... .++..+..+...++|.+...+..+..+.--.+..-
T Consensus 596 -------------eiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQl 662 (960)
T KOG1992|consen 596 -------------EIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQL 662 (960)
T ss_pred -------------HHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 1111122222222222211 12233445566777888877777666667777778
Q ss_pred HHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHh---chh------HHHHhhHHHHHhhccCChhHH
Q 000143 1643 IGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL---GTV------YFEHILPDIIRNCSHQRASVR 1713 (2058)
Q Consensus 1643 Lg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~---g~~------~l~~llp~Ll~~l~~~~~~vR 1713 (2058)
++.+++..+...-+.++| ++..|-+..-| .|.+-.-++-.+..++ |.. .+..++..+...+.++...
T Consensus 663 la~lve~~~~~ip~~~~~-l~~~lLsp~lW-~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~D-- 738 (960)
T KOG1992|consen 663 LAVLVEHSSGTIPDSYSP-LFPPLLSPNLW-KRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKAND-- 738 (960)
T ss_pred HHHHHHhcCCCCchhHHH-HHHHhcCHHHH-hhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccc--
Confidence 888887665532222333 33334334444 4555444443333332 222 2233444333333333111
Q ss_pred HHHHHHHHHhHHHhch-hHHHhHHHHHHHHHHhccCCC
Q 000143 1714 DGYLTLFKYLPRSLGV-QFQNYLQQVLPAILDGLADEN 1750 (2058)
Q Consensus 1714 ~~al~~l~~la~~~g~-~f~pyl~~ilp~Ll~~L~d~~ 1750 (2058)
...+.++..+...+.. ...||+.++.-.+++.++...
T Consensus 739 h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~Rlqnsk 776 (960)
T KOG1992|consen 739 HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSK 776 (960)
T ss_pred hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccC
Confidence 2344556655555543 467899999999999987754
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.5e-06 Score=103.49 Aligned_cols=401 Identities=17% Similarity=0.136 Sum_probs=235.6
Q ss_pred ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000143 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2058)
Q Consensus 1332 ~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg 1411 (2058)
+.+...+++.+..+.... +..+++-.---|-+.++.-....+ --+.+++..+.|+ |+-.|..|+.++..|-
T Consensus 66 G~dvS~~Fp~VVKNVask-n~EVKkLVyvYLlrYAEeqpdLAL---LSIntfQk~L~Dp-N~LiRasALRvlSsIR---- 136 (968)
T KOG1060|consen 66 GKDVSLLFPAVVKNVASK-NIEVKKLVYVYLLRYAEEQPDLAL---LSINTFQKALKDP-NQLIRASALRVLSSIR---- 136 (968)
T ss_pred CCcHHHHHHHHHHHhhcc-CHHHHHHHHHHHHHHhhcCCCcee---eeHHHHHhhhcCC-cHHHHHHHHHHHHhcc----
Confidence 455778888888887655 466776655555555554333222 2367788889888 8999998888775541
Q ss_pred ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChh
Q 000143 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ 1491 (2058)
Q Consensus 1412 ~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~ 1491 (2058)
+.-..+-++-.+-++..|..+.||..|+.|+..+-+ +.++.-.+++..+-..|.|.+.-+--+|+.++..++..--+
T Consensus 137 --vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld 213 (968)
T KOG1060|consen 137 --VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD 213 (968)
T ss_pred --hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH
Confidence 222233345556678899999999999999988853 44444456666666677788887777777766654422222
Q ss_pred hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-cCch-------------------------------hHHhHH
Q 000143 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV-IKNP-------------------------------EIASLV 1539 (2058)
Q Consensus 1492 ~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~-~~~~-------------------------------~i~~lv 1539 (2058)
-+.+++.. ++..+-|-+..=+.-.+..|-+.+.. +.+| ++.-++
T Consensus 214 LIHknyrk----lC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL 289 (968)
T KOG1060|consen 214 LIHKNYRK----LCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLL 289 (968)
T ss_pred HhhHHHHH----HHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHH
Confidence 23444333 44445554444444455555555542 1111 111111
Q ss_pred HHHHhccCCCChhHHHHHHHHHhccccccCChh-hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh
Q 000143 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAP-SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618 (2058)
Q Consensus 1540 p~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~-~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~ 1618 (2058)
...-..+...+..+--|.. + .|. ++..+ ....+...|.+.|.+.. +++....+.|..|+. ..+.-|.||+.
T Consensus 290 ~stkpLl~S~n~sVVmA~a---q-l~y-~lAP~~~~~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~--~~~~lF~P~lK 361 (968)
T KOG1060|consen 290 QSTKPLLQSRNPSVVMAVA---Q-LFY-HLAPKNQVTKIAKALVRLLRSNR-EVQYVVLQNIATISI--KRPTLFEPHLK 361 (968)
T ss_pred HhccHHHhcCCcHHHHHHH---h-HHH-hhCCHHHHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHh--cchhhhhhhhh
Confidence 1111111111221110110 0 011 11111 34455666666665533 566666666666665 24444444443
Q ss_pred ------------------------------hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhccc
Q 000143 1619 ------------------------------LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2058)
Q Consensus 1619 ------------------------------~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~ 1668 (2058)
.+++.++....+++.++-..+.+|+|..+...+.- -+.++.+|+..+.+
T Consensus 362 sFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv-~~tCL~gLv~Llss 440 (968)
T KOG1060|consen 362 SFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSV-TDTCLNGLVQLLSS 440 (968)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCch-hhHHHHHHHHHHhc
Confidence 24555556666777778889999999999877653 46799999999987
Q ss_pred CCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhcc
Q 000143 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2058)
Q Consensus 1669 d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~ 1747 (2058)
..+. +-..++..+-.++..-..++. +++..+...+..- -+.-|.++++++|..+..... ..+.++..+.+.+.
T Consensus 441 hde~-Vv~eaV~vIk~Llq~~p~~h~-~ii~~La~lldti~vp~ARA~IiWLige~~e~vpr----i~PDVLR~laksFs 514 (968)
T KOG1060|consen 441 HDEL-VVAEAVVVIKRLLQKDPAEHL-EILFQLARLLDTILVPAARAGIIWLIGEYCEIVPR----IAPDVLRKLAKSFS 514 (968)
T ss_pred ccch-hHHHHHHHHHHHHhhChHHHH-HHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcch----hchHHHHHHHHhhc
Confidence 6544 445555566555544333321 2344444444322 566788889999888775432 45667778888889
Q ss_pred CCCHHHHHHHHHHHHH
Q 000143 1748 DENESVRDAALGAGHV 1763 (2058)
Q Consensus 1748 d~~~~VR~~a~~al~~ 1763 (2058)
++.+.||-.++.-...
T Consensus 515 ~E~~evKlQILnL~aK 530 (968)
T KOG1060|consen 515 DEGDEVKLQILNLSAK 530 (968)
T ss_pred cccchhhHHHHHhhhh
Confidence 9999998877655443
|
|
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.89 E-value=0.0013 Score=84.72 Aligned_cols=341 Identities=16% Similarity=0.151 Sum_probs=194.4
Q ss_pred CHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHH--hchhHHHHhhHHHHHhhc
Q 000143 1632 IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA--LGTVYFEHILPDIIRNCS 1706 (2058)
Q Consensus 1632 ~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~--~g~~~l~~llp~Ll~~l~ 1706 (2058)
.|....+...+...+. .|+. ++..++..+...+.....+..-..+...++.+... ..+..+..++......+.
T Consensus 423 ~wk~qea~l~a~~~~~--~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~ 500 (1005)
T KOG2274|consen 423 WWKIQEALLVAAESVR--IDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALT 500 (1005)
T ss_pred HHHHHHHHHHHHhhcc--cCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhc
Confidence 3555555555554444 2221 33444444555555555554555667777766665 334445566665555544
Q ss_pred -cCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccc---hhchHHhHhh
Q 000143 1707 -HQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS---LPLLLPAVED 1782 (2058)
Q Consensus 1707 -~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~---l~~llp~L~~ 1782 (2058)
+..+.+|.+++..+...+. ..-..++++.++..+++...+..++|-...++++..+++.-.+.. -..+.|.+..
T Consensus 501 ~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~ 578 (1005)
T KOG2274|consen 501 MDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTIN 578 (1005)
T ss_pred cCCCCchhHHHHHHHHhccC--ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHH
Confidence 4477888888888877662 223457888899999999998888898888999988775322211 1235555444
Q ss_pred hcC--CCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCC----
Q 000143 1783 GIF--NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV---- 1856 (2058)
Q Consensus 1783 ~l~--d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~---- 1856 (2058)
.+. .+++.+-..+-+++.+++... ...|+ .....++.+...+.-.
T Consensus 579 lF~k~s~DP~V~~~~qd~f~el~q~~----------------------------~~~g~-m~e~~iPslisil~~~~~~~ 629 (1005)
T KOG2274|consen 579 LFLKYSEDPQVASLAQDLFEELLQIA----------------------------ANYGP-MQERLIPSLISVLQLNADKA 629 (1005)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHH----------------------------Hhhcc-hHHHHHHHHHHHHcCccccc
Confidence 331 122344444444444443210 11111 1112233333222111
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHH-HhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCc--------c--hhhch
Q 000143 1857 SLSVRQAALHVWKTIVANTPKTLK-EIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGE--------R--VLPSI 1924 (2058)
Q Consensus 1857 ~~~VR~aA~~~l~~lv~~~~~~l~-~~l~~L~~~l~~~-L~~~~~~~R~~A~~~Lg~L~~~lg~--------~--~l~~l 1924 (2058)
.......|++++..++.++|..+. .+....++.+.++ +.+++.+.-+.+-+||..++....+ . .+-.+
T Consensus 630 ~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yI 709 (1005)
T KOG2274|consen 630 PAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYI 709 (1005)
T ss_pred CchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHH
Confidence 134556688899888888775543 3455666666665 4566778888899999988876221 1 13477
Q ss_pred HHHHhhhcCCCChh-HHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhChhhHH
Q 000143 1925 IPILSRGLKDPSAS-RRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL-CDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2058)
Q Consensus 1925 lp~L~~~l~d~~~~-vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L-~D~d~~VR~~Aa~a~~~l~~~~g~~~~~ 2002 (2058)
+..+.+.|+-+..+ .-..+-.-+..++...|.+ +.+-+++++..+...+ .-....|-++-...|+.+... ..+
T Consensus 710 mqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~e-l~~n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t----~~~ 784 (1005)
T KOG2274|consen 710 MQVLSQLLDPETSDSAAAFVGPLVLTLITHASSE-LGPNLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHT----DLD 784 (1005)
T ss_pred HHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhC----CHH
Confidence 77777777532221 1112222233455556543 5666677776666555 456788889999999888642 344
Q ss_pred HHHHHHHH
Q 000143 2003 EIVPTLLH 2010 (2058)
Q Consensus 2003 ~ilp~Ll~ 2010 (2058)
+++..|..
T Consensus 785 ~~l~FL~S 792 (1005)
T KOG2274|consen 785 QLLNFLSS 792 (1005)
T ss_pred HHHHHHHh
Confidence 55555554
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.8e-06 Score=109.15 Aligned_cols=385 Identities=18% Similarity=0.190 Sum_probs=238.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HH
Q 000143 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQ 1420 (2058)
Q Consensus 1342 Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l-~~ 1420 (2058)
+++.+...+ ...-..++..|..+.....+..+ ...+.+++...+.++ ++.+|..++..++.+.+.-....+... ..
T Consensus 43 lf~~L~~~~-~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~gL~h~-~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSN-REQVELICDILKRLLSALSPDSL-LPQYQPFLQRGLTHP-SPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcC-hHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 555554443 22334555667777766554443 246788888888887 889999999988777654322111111 35
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh-H--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~-v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
+++.++.++.|++..|...|..++..++..-.... + ...++.+...+...+..+|.-+.+++..++...++.+....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~ 199 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVV 199 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88999999999999999999999999986533221 1 22266666666665667777788999999887776654432
Q ss_pred -hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-hhH--HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhh
Q 000143 1498 -PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEI--ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2058)
Q Consensus 1498 -~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i--~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~ 1573 (2058)
..+++.+...+.+.+..||..|++.+..++..-.. .++ ..+++.+...+.+.....| .
T Consensus 200 ~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~------------------~ 261 (503)
T PF10508_consen 200 NSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPR------------------L 261 (503)
T ss_pred hccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCc------------------c
Confidence 25899999999999999999999999999983211 233 3455555555544322110 0
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh-cc
Q 000143 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM-GE 1652 (2058)
Q Consensus 1574 l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l-g~ 1652 (2058)
...++|... ...|+++.. .+..+...++.++..+...+.+.++..+..|+.++|.++... |.
T Consensus 262 ~~~~l~g~~---------------~f~g~la~~--~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~ 324 (503)
T PF10508_consen 262 SSLLLPGRM---------------KFFGNLARV--SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK 324 (503)
T ss_pred cchhhhhHH---------------HHHHHHHhc--ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH
Confidence 111222211 356666663 444454556778888888888999999999999999998643 22
Q ss_pred cC--------ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HH------------HHhhH-HHHHhhccC
Q 000143 1653 EN--------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF------------EHILP-DIIRNCSHQ 1708 (2058)
Q Consensus 1653 ~~--------~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l------------~~llp-~Ll~~l~~~ 1708 (2058)
.. +..++..+.....+ ...+.|..+..+++.+....... .+ ..-+. .++..++.|
T Consensus 325 ~~L~~~~~~~~~~~l~~~~~~~~~-~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qP 403 (503)
T PF10508_consen 325 QLLLQKQGPAMKHVLKAIGDAIKS-GSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQP 403 (503)
T ss_pred HHHHhhcchHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCC
Confidence 21 12233333333332 33457888999999886543321 11 01111 456666677
Q ss_pred ChhHHHHHHHHHHHhHHHh-chhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000143 1709 RASVRDGYLTLFKYLPRSL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1709 ~~~vR~~al~~l~~la~~~-g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv 1765 (2058)
=+.+|.+++..+..++... |...---.+.++..++..-.+.+.+.++.=...++.+.
T Consensus 404 F~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 404 FPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 7899999998888777642 11111111234444444444445555444444444444
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-05 Score=99.55 Aligned_cols=491 Identities=15% Similarity=0.156 Sum_probs=262.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 000143 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLP 1461 (2058)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp 1461 (2058)
-|.+.+.+.++...+++--..++.++.+-. +..+.|.+.+.....+..|++-..-=|-+.+..-+.-.+ .-+.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~d------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL-LSIn 111 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKD------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL-LSIN 111 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee-eeHH
Confidence 355666666677777766666666766433 345556666677777788877654434333332221110 1134
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHH
Q 000143 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2058)
Q Consensus 1462 ~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~ 1541 (2058)
.+-+.|.|++.-+|..|+..+..|-- ....|-++-.+.++..|+.+.||+.|+.|+..+-..- ..+..+++..
T Consensus 112 tfQk~L~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd-~e~k~qL~e~ 184 (968)
T KOG1060|consen 112 TFQKALKDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD-PEQKDQLEEV 184 (968)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC-hhhHHHHHHH
Confidence 55667888888899888888876531 1112233334557778999999999999988886643 2334477777
Q ss_pred HHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHH---HHHhhcCC-CHHHHHHHHHHHHHHHhh-hCCCCc---
Q 000143 1542 LLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPI---VHRGLRER-SAETKKKAAQIVGNMCSL-VTEPKD--- 1612 (2058)
Q Consensus 1542 Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~---L~~~L~d~-s~~vr~~A~~~l~~L~~~-l~~~~~--- 1612 (2058)
+-..+.|.+..|- .|+-++-. +....+..|-+. +.+++.|- +|. +......+...|+. +.+|..
T Consensus 185 I~~LLaD~splVvgsAv~AF~e------vCPerldLIHknyrklC~ll~dvdeWg-QvvlI~mL~RYAR~~l~~P~~~~~ 257 (968)
T KOG1060|consen 185 IKKLLADRSPLVVGSAVMAFEE------VCPERLDLIHKNYRKLCRLLPDVDEWG-QVVLINMLTRYARHQLPDPTVVDS 257 (968)
T ss_pred HHHHhcCCCCcchhHHHHHHHH------hchhHHHHhhHHHHHHHhhccchhhhh-HHHHHHHHHHHHHhcCCCcccccc
Confidence 7778888776553 22222211 111223333332 22333332 222 11222222222221 001100
Q ss_pred ------------------hhh-----hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccC
Q 000143 1613 ------------------MIP-----YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669 (2058)
Q Consensus 1613 ------------------l~p-----yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d 1669 (2058)
-.| -+..++.....++...++.
T Consensus 258 ~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~s----------------------------------- 302 (968)
T KOG1060|consen 258 SLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPS----------------------------------- 302 (968)
T ss_pred ccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcH-----------------------------------
Confidence 001 0111222222222223333
Q ss_pred CChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCC
Q 000143 1670 NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE 1749 (2058)
Q Consensus 1670 ~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~ 1749 (2058)
+-.++++.+-.++. ......+...+++.+. .++.+|..+++.+..++..-..-|.||+..+. +...
T Consensus 303 ----VVmA~aql~y~lAP---~~~~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf------v~ss 368 (968)
T KOG1060|consen 303 ----VVMAVAQLFYHLAP---KNQVTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFF------VRSS 368 (968)
T ss_pred ----HHHHHHhHHHhhCC---HHHHHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceE------eecC
Confidence 33333333222211 1122333444444333 24556666677777776666666777764321 1222
Q ss_pred CH-HHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHH
Q 000143 1750 NE-SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2058)
Q Consensus 1750 ~~-~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~ 1828 (2058)
++ .++.-=++.+..+ ..+..+..+++++...+.+.+.++...+++.+|.....+.
T Consensus 369 Dp~~vk~lKleiLs~L---a~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~--------------------- 424 (968)
T KOG1060|consen 369 DPTQVKILKLEILSNL---ANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG--------------------- 424 (968)
T ss_pred CHHHHHHHHHHHHHHH---hhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC---------------------
Confidence 22 2222222223333 2345677789999988888777888888999998753211
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 000143 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRA 1908 (2058)
Q Consensus 1829 ~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~ 1908 (2058)
...+.++..|...+...+..|-..++.+++.++..-|....+++..+...+- .-..+.-|...+..
T Consensus 425 -----------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lld---ti~vp~ARA~IiWL 490 (968)
T KOG1060|consen 425 -----------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLD---TILVPAARAGIIWL 490 (968)
T ss_pred -----------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhh---hhhhhhhhceeeee
Confidence 1223445555554444456677778888999998777655556555554431 11234556666777
Q ss_pred HHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHh-cCCCHHHHHHHH
Q 000143 1909 LGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL-CDSILEVRESAG 1986 (2058)
Q Consensus 1909 Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L-~D~d~~VR~~Aa 1986 (2058)
+|+.|.. -.++.|+++-.+.+.+.++.+.+|..+...-..+... ..++ ...+...+.... -|.+-++|+.+-
T Consensus 491 ige~~e~-vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl~-~~~~----~kll~~Yv~~L~~yD~sYDiRDRaR 563 (968)
T KOG1060|consen 491 IGEYCEI-VPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYLT-NIDQ----TKLLVQYVFELARYDLSYDIRDRAR 563 (968)
T ss_pred ehhhhhh-cchhchHHHHHHHHhhccccchhhHHHHHhhhhheEe-chhh----HHHHHHHHHHHhccCCCcchhHHHH
Confidence 8887765 2345677777788888888888998766532223221 1222 234444455433 488888888774
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.2e-07 Score=118.88 Aligned_cols=295 Identities=19% Similarity=0.215 Sum_probs=206.1
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHh
Q 000143 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~ 1458 (2058)
+++.+...+..=+....+-+|+..+..++..... +.-++.++|.++.++.|+...||..|..++..+.....+
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~----- 495 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRD----- 495 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC-----
Confidence 4566666665544566777888877777776654 666788999999999999999999998888776432211
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHHh
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2058)
..+.+..-+-.-|+|.|..++.| ....||-+-+.+|+.+|...- .+..
T Consensus 496 -----------------------------~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~--rFle 544 (1431)
T KOG1240|consen 496 -----------------------------IPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY--RFLE 544 (1431)
T ss_pred -----------------------------CCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH--HHHH
Confidence 11111111223578888999999 778899999999999997532 1111
Q ss_pred HHHHHHh--ccCCCChhHH------HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000143 1538 LVPTLLM--GLTDPNDHTK------YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2058)
Q Consensus 1538 lvp~Ll~--~l~d~~~~vr------~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~ 1609 (2058)
+...+-. .+++|+..+. .-+.+| ...+-..+..++.|.++-||+.-.+.|..+|..++.
T Consensus 545 ~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-------------~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk 611 (1431)
T KOG1240|consen 545 LTQELRQAGMLNDPNSETAPEQNYNTELQAL-------------HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK 611 (1431)
T ss_pred HHHHHHhcccccCcccccccccccchHHHHH-------------HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh
Confidence 2222222 2455543210 111111 111233455667888889999999999999988765
Q ss_pred CCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC-ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHH
Q 000143 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688 (2058)
Q Consensus 1610 ~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~-~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~ 1688 (2058)
.+. -+.+++.|...|+|.+|.+|.+-++.+..++--+|... -+-++|.|.+.|. |.+..+-..+..++..+++.
T Consensus 612 ~ks----ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~lt-D~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 612 EKS----NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLT-DGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred ccc----ccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhcc-CcchhhHHHHHHHHHHHHHh
Confidence 322 34588999999999999999999999888877778763 3458888888888 55555777888888877653
Q ss_pred --hchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch
Q 000143 1689 --LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2058)
Q Consensus 1689 --~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~ 1729 (2058)
+.+.++.+++..+.-.+..|+..+|.+++..+..++..++.
T Consensus 687 ~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 687 GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 22335667778888888999999999999999998888765
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-05 Score=104.92 Aligned_cols=237 Identities=17% Similarity=0.181 Sum_probs=136.4
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHHHHhhcCCCCCCCHHhHH
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLF 1136 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~~~~~~~~~~~ll 1136 (2058)
..+..|+..+.+|.|++|+.+--+|.++......+.. + +. =++-.+|.+.....+ .+-
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~----~--~~-----led~~~rll~v~~Ld-----------rf~ 134 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLS----Y--EL-----LEDLLIRLLCVLALD-----------RFG 134 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhh----H--HH-----HHHHHHHHHHHHHHH-----------Hhc
Confidence 3677888999999999999999999887633322221 1 00 011112222222111 122
Q ss_pred HHhc-CCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCCh-
Q 000143 1137 KALS-HSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDL- 1213 (2058)
Q Consensus 1137 ~~l~-~~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~~- 1213 (2058)
+++. +-...||++.+++|++..+. .++.+...+.-+..... .+.|+.|+|.+.++++..... .+..
T Consensus 135 dfisd~vvapVre~caq~L~~~l~~~~~s~~~~~~~il~q~~~----------q~~w~ir~Ggll~iky~~air-~d~l~ 203 (1549)
T KOG0392|consen 135 DFISDNVVAPVREACAQALGAYLKHMDESLIKETLDILLQMLR----------QPNWEIRHGGLLGIKYNVAIR-QDLLF 203 (1549)
T ss_pred ccccccchhhhHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHc----------CcchhheechHHHHHHHHHHH-HHHHH
Confidence 3333 34679999999999999875 34455555555555432 247999999999999886632 2222
Q ss_pred ---HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhh---CccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHH
Q 000143 1214 ---PVIMTFLISRALADTNADVRGRMLNAGIMIIDKH---GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGAL 1287 (2058)
Q Consensus 1214 ---~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~---g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~L 1287 (2058)
+.++++.+ .++.|.+.+||..+......+.... ....+..+...++..+..-+. ... -...-+..+..+
T Consensus 204 ~~~~~vl~~~i-~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~ldd-l~~---s~~si~~ll~~l 278 (1549)
T KOG0392|consen 204 QLLNLVLDFVI-EGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDD-LSS---STASIMHLLDEL 278 (1549)
T ss_pred HHHHHHHHHHH-hhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhh-cch---hhHHHHHHHHHH
Confidence 34455554 6899999999999987755444333 122344444444443332100 000 011123333344
Q ss_pred HhHh-----ccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc
Q 000143 1288 AKHL-----AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM 1331 (2058)
Q Consensus 1288 a~~l-----~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~ 1331 (2058)
+.+. ......-..++++++..+++.-..|+.++.+.+..|...-
T Consensus 279 ~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 279 CIENEVLDLFEQQNLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred hhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3222 1100111356788888888877788888887777776543
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-07 Score=109.54 Aligned_cols=182 Identities=26% Similarity=0.326 Sum_probs=131.7
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHH-------HHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH
Q 000143 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR-------EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~-------~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~ 1419 (2058)
..+.+|..|..|...|..++.+...... ...+++.+. ..+.|. ...+-..|+.++..++..++..|+||+.
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4567899999999999999987621111 113333333 333333 4456677889999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhH-HHHHHHhccCCChHHHHHHHHHHHHHHhhCh---hhHhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV-LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQLSQ 1495 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~l-lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p---~~l~~ 1495 (2058)
.++|.++..++|....+|.+|..++..++...+ ....+ ++.+...+.++++.+|..++..+..+....+ ..+..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 999999999999999999999999999998776 11234 6777788899999999999999999988777 34433
Q ss_pred --hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1496 --CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1496 --~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
.++.+++.+.++++|+++.||.+|-.++..+.+.+++
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3588999999999999999999999999999877653
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-07 Score=109.17 Aligned_cols=200 Identities=24% Similarity=0.328 Sum_probs=137.9
Q ss_pred chHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhc
Q 000143 1775 LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS 1854 (2058)
Q Consensus 1775 ~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~ 1854 (2058)
.+.+.+...-.+.+|..|..++.-+..++... .. ......+.+.+. .++..+.....
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~--~~----------------~~~~~~~~~~l~-----~~~~~i~~~l~ 63 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGN--AP----------------EDFPPDFVECLR-----QLLDAIIKQLS 63 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH---B---------------------HHHHHHHH--------HHHHH-S-
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcC--Cc----------------cccHHHHHHHHH-----HhHHHHHHHHh
Confidence 34555544457789999999999998886421 00 000011111111 33345555666
Q ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhch-HHHHhhhcC
Q 000143 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSI-IPILSRGLK 1933 (2058)
Q Consensus 1855 D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~l-lp~L~~~l~ 1933 (2058)
|....|-..|+.+++.++...+..+.++++.+++.+++.+++++..+|..|..||..++..++ +.+.+ .+.+..+.+
T Consensus 64 d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~ 141 (228)
T PF12348_consen 64 DLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLK 141 (228)
T ss_dssp HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHh
Confidence 766778888999999999999989999999999999999999999999999999999999776 33455 777788889
Q ss_pred CCChhHHHHHHHHHHHHHHhhC--hhhhHh--HHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChh
Q 000143 1934 DPSASRRQGVCIGLSEVMASAG--KSQLLS--FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ 1999 (2058)
Q Consensus 1934 d~~~~vR~~a~~aL~eii~~~~--~~~l~~--~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~ 1999 (2058)
+.++.+|..++..+..++...+ ...+.. +++.+.+.+.+.+.|++++||++|..+|..+.+..|..
T Consensus 142 ~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~ 211 (228)
T PF12348_consen 142 SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER 211 (228)
T ss_dssp -S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence 9999999999999999998887 233332 34789999999999999999999999999999988764
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.9e-07 Score=103.01 Aligned_cols=344 Identities=17% Similarity=0.128 Sum_probs=221.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh--H--
Q 000143 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG--V-- 1456 (2058)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~-~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~--v-- 1456 (2058)
.+...+++. ++....++..++|.++-..+.. +---+..+=+.+.+.++| ...||..+..|+..++.. +... +
T Consensus 89 pvl~llqs~-d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~-d~nk~kiA~ 165 (550)
T KOG4224|consen 89 PVLALLQSC-DKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATF-DSNKVKIAR 165 (550)
T ss_pred HHHHHHhCc-chhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhcc-ccchhhhhh
Confidence 333444554 5666666777777776555421 111122333456666766 456777778888777654 3222 2
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHH
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2058)
...+.++...-++++-++|..+..+|.+|-......-.-....-+|.|..++...++.||..|+.+++.++-.-.+
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~---- 241 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA---- 241 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH----
Confidence 2334555554457788899988888888875432221111235678889999999999999999999999753211
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh
Q 000143 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2058)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py 1616 (2058)
| ..|.+ +-..++|.+...+.+.++.++-+|.-++++++. +.+...+.
T Consensus 242 -----------------R---k~Laq----------aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas---dt~Yq~ei 288 (550)
T KOG4224|consen 242 -----------------R---KILAQ----------AEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS---DTEYQREI 288 (550)
T ss_pred -----------------H---HHHHh----------cccchHHHHHHHHhCCChHHHHHHHHHHhhhcc---cchhhhHH
Confidence 1 01111 112366777777788888888888888888875 22222333
Q ss_pred Hh-hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh
Q 000143 1617 IG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2058)
Q Consensus 1617 l~-~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2058)
.+ .-+|.+.++++++.-..-.....|+-.+.-+-+.+ .-..++..|...|...++.+.+..+...|-.++......
T Consensus 289 v~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n 368 (550)
T KOG4224|consen 289 VEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHN 368 (550)
T ss_pred HhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhh
Confidence 22 45788999999887666566666776665544443 113467778888876556657777777776666533222
Q ss_pred ---HH-HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 000143 1693 ---YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1693 ---~l-~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~ 1766 (2058)
.. ..-+|.+...+.|..-.+|+..-.|+..++.. +.+..|+ ..++|.++....+++++||..+..|+..+..
T Consensus 369 ~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 369 VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS 446 (550)
T ss_pred hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence 11 34677888888888888888887777776543 3333333 3488999999999999999999999987754
Q ss_pred H
Q 000143 1767 H 1767 (2058)
Q Consensus 1767 ~ 1767 (2058)
.
T Consensus 447 ~ 447 (550)
T KOG4224|consen 447 D 447 (550)
T ss_pred h
Confidence 3
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.7e-07 Score=102.24 Aligned_cols=309 Identities=15% Similarity=0.121 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---hCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG---FGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2058)
Q Consensus 1336 ~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~---~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~ 1412 (2058)
..-+|.+.+.+..+ |......|.+-+..++.. .++..+....++|.+.+.+.+....-..-.|..++..++.+...
T Consensus 70 ~~elp~lt~~l~Sd-Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~ 148 (526)
T COG5064 70 YSELPQLTQQLFSD-DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQ 148 (526)
T ss_pred hhhhHHHHHHHhhh-HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCccc
Confidence 33456666666554 344455555555444432 11222223366777777774332333344566778788765442
Q ss_pred cchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh---hH-HhHHHHHHHhccCCCh--HHHHHHHHHHHHH
Q 000143 1413 LFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV-KLVLPSLLKGLEDKAW--RTKQSSVQLLGAM 1485 (2058)
Q Consensus 1413 ~~~p~l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~---~v-~~llp~Ll~~L~~~~~--~~R~~a~~~Lg~l 1485 (2058)
.-.-.+ ...+|.++..+.+.+..||+.+.++|+.++..-+.. .+ -..+.+++..+.+... ..-+.+...|+.+
T Consensus 149 QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 149 QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 111111 247899999999999999999999999997554432 12 3456677776665443 4445688899999
Q ss_pred HhhC-hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH-----HhHHHHHHhccCCCChhHH-HHHH
Q 000143 1486 AYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTK-YSLD 1558 (2058)
Q Consensus 1486 a~~~-p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-----~~lvp~Ll~~l~d~~~~vr-~al~ 1558 (2058)
+.+- |..-...+...+|.|.+++...+++|-.-||||+.-+...-. +.+ ..+.+.|++++..|+..++ .++.
T Consensus 229 cRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~-E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 229 CRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPN-EKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH-HHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 9873 332344566888999999998899999999999999987432 222 2345668888888876665 5777
Q ss_pred HHHhccccccCChhh--HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh-hhhHHHHHhhCCCCHHH
Q 000143 1559 ILLQTTFVNTVDAPS--LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG-LLLPEVKKVLVDPIPEV 1635 (2058)
Q Consensus 1559 ~L~~~~f~~~~~~~~--l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~-~ll~~L~~~l~d~~~~v 1635 (2058)
..+.+--....+... -.-.++.+...|..+...+|+++|..+.++.. +..+.+....+ .++|.|..++...+..+
T Consensus 308 ~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA--Gnteqiqavid~nliPpLi~lls~ae~k~ 385 (526)
T COG5064 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA--GNTEQIQAVIDANLIPPLIHLLSSAEYKI 385 (526)
T ss_pred hhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccccc--CCHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 776521111111000 01245666666777777999999999999865 33333333332 68899999999888999
Q ss_pred HHHHHHHHHHHHH
Q 000143 1636 RSVAARAIGSLIR 1648 (2058)
Q Consensus 1636 R~~a~~aLg~l~~ 1648 (2058)
|..|..|+.....
T Consensus 386 kKEACWAisNats 398 (526)
T COG5064 386 KKEACWAISNATS 398 (526)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999887664
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.0032 Score=81.35 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=128.4
Q ss_pred ChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChh-hHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000143 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKL 1916 (2058)
Q Consensus 1838 g~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~-~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~l 1916 (2058)
.+.+|.++.+.+..........+|..-+..+..+..+.|. .+.+.+|.++|.+++++.-++.++|..+.+++..+....
T Consensus 861 kQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 861 KQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 4556677777777665544556677777778888888884 567899999999999999999999999999999988876
Q ss_pred Cc---chhhchHHHHhhhcCCCC---hhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000143 1917 GE---RVLPSIIPILSRGLKDPS---ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990 (2058)
Q Consensus 1917 g~---~~l~~llp~L~~~l~d~~---~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~ 1990 (2058)
+. ..+..++|.+...-.|.+ ..+|..+..+|+.+.+..+...+.+|.+.++..+.+.|.|+..-||..|..+=+
T Consensus 941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 63 357889998887666554 569999999999888888888889999999999999999999999999988755
Q ss_pred HHH
Q 000143 1991 TLF 1993 (2058)
Q Consensus 1991 ~l~ 1993 (2058)
...
T Consensus 1021 ~W~ 1023 (1030)
T KOG1967|consen 1021 NWY 1023 (1030)
T ss_pred hhh
Confidence 543
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.0056 Score=82.88 Aligned_cols=151 Identities=18% Similarity=0.277 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHH--hcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCCh
Q 000143 1396 REGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAW 1472 (2058)
Q Consensus 1396 R~~al~al~~L~~~--lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~ 1472 (2058)
+..+...+-.++.. +...|++|+. .++..++.+...+|-.|..|+..++..-+.--. +.+...+..++.|..-
T Consensus 794 ~~~a~li~~~la~~r~f~~sfD~yLk----~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~Dssa 869 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQSFDPYLK----LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSA 869 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHhhHHHHH----HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchh
Confidence 44444444444432 2234555554 455667788899999999999999754332111 5667777888999999
Q ss_pred HHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-hhHHhHHHHHHhccCCCCh
Q 000143 1473 RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASLVPTLLMGLTDPND 1551 (2058)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~lvp~Ll~~l~d~~~ 1551 (2058)
.+|.+|++++|.+.-+.|+-..+|... +.+...|+...||+.+++-+..+++..++ +.+..+.-.++....|...
T Consensus 870 sVREAaldLvGrfvl~~~e~~~qyY~~----i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 870 SVREAALDLVGRFVLSIPELIFQYYDQ----IIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHH----HHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchh
Confidence 999999999999998877766666555 44567899999999999999999986543 2233444445556667655
Q ss_pred hHH
Q 000143 1552 HTK 1554 (2058)
Q Consensus 1552 ~vr 1554 (2058)
.+.
T Consensus 946 ~I~ 948 (1692)
T KOG1020|consen 946 NIK 948 (1692)
T ss_pred HHH
Confidence 444
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-06 Score=99.84 Aligned_cols=342 Identities=15% Similarity=0.097 Sum_probs=222.2
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchh-
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE- 1534 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~-~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~- 1534 (2058)
+....+++..+.+.+.....++..++|.++-.... .+...+..+=+.+.++..| +..||..+..|+-.++..-.+..
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~k 162 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVK 162 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhh
Confidence 44556667777888889999999999998865432 2333344544556666666 67889988899888887643321
Q ss_pred H---HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCC-hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000143 1535 I---ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2058)
Q Consensus 1535 i---~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~-~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~ 1609 (2058)
+ ..+.| +.+.-...+..+| .+..+|...+...+-- .-..+--+|++...++..+.++++.++..+++++---..
T Consensus 163 iA~sGaL~p-ltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~ 241 (550)
T KOG4224|consen 163 IARSGALEP-LTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRA 241 (550)
T ss_pred hhhccchhh-hHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHH
Confidence 1 22333 2332222233343 5666665422211100 001122468899999999999999999999999742112
Q ss_pred CCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCc-----cchHHHHHhhcccCCChHHHhhHHHHHHH
Q 000143 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNVERSGAAQGLSE 1684 (2058)
Q Consensus 1610 ~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~-----~~llp~L~~~L~~d~~~~~R~~aa~~L~~ 1684 (2058)
.+.+..--|.++|.|..++.|+++.++-.|..|++.++.. .+|. ..-+|.+++.++++..+ .-.....|+-.
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd--t~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrn 318 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD--TEYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRN 318 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc--chhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhh
Confidence 2334444567999999999999999999999999998752 2222 34678888888754443 44444555544
Q ss_pred HHHHhchhHH---HHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhH-HHHHHHHHHhccCCCHHHHHHHHH
Q 000143 1685 VLAALGTVYF---EHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYL-QQVLPAILDGLADENESVRDAALG 1759 (2058)
Q Consensus 1685 i~~~~g~~~l---~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl-~~ilp~Ll~~L~d~~~~VR~~a~~ 1759 (2058)
+.-.-+.+.+ ..++..+...+.-. +.+.+-.+...+.+++.........+. ...+|.+...+-|..-+||.....
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 4333333311 23555566666544 556888889999999876554433333 347888888888888889988777
Q ss_pred HHHHHHHH--hcccchh-chHHhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1760 AGHVLVEH--YATTSLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1760 al~~lv~~--~~~~~l~-~llp~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
++..+.-+ ......+ .++|.|.....+.+..+|-.+...++.+-
T Consensus 399 c~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nls 445 (550)
T KOG4224|consen 399 CIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLS 445 (550)
T ss_pred HHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhh
Confidence 77765422 2222222 27788888888999999999999998873
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.0045 Score=82.15 Aligned_cols=775 Identities=16% Similarity=0.161 Sum_probs=370.2
Q ss_pred ccchHhHHHHHHhhhhhcccCCCCCccchHhhHHHHHHHHcCCC-CCCchhhHHHHH------HhhcCC-----CCCCcH
Q 000143 955 NKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPK-RTGLHDDVLQML------YKHMDP-----LLPLPR 1022 (2058)
Q Consensus 955 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~-----~~~~~~ 1022 (2058)
.|.+..++.+-.||+..- +..-=++.++..++=++..-..+-. ..+....-|+.+ +.|... -..+--
T Consensus 190 ~e~flsl~~~~~yrllEn-~~~~k~~~t~~ai~~ilg~s~k~~~~~~t~~~rilq~l~~fehl~~~~ad~v~l~~sky~~ 268 (1251)
T KOG0414|consen 190 DEDFLSLIVDPIYRLLEN-EHVNKNSSTKDAIFRILGSSVKRYNQCSTFASRILQNLRYFEHLAVHVADAVTLVRSKYGS 268 (1251)
T ss_pred HHHHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 456788889999988876 2223355666666655554443311 111122223333 233311 123333
Q ss_pred HHHHHHHHHHHcc------ccchHHHHHHHHHHHHhcCC---hHHHHHHHhhhcCCChhHHHHHHHhhhcCCccc--cCC
Q 000143 1023 LRMISVLYHVLGV------VPSYQAAIGSALNELCLGLQ---PNEVASALHGVYTKDVHVRMACLNAVKCIPAVS--TRS 1091 (2058)
Q Consensus 1023 ~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~--~~~ 1091 (2058)
..++..++.-++. ++..-+.....|.+++.-+. ..++..++.-+-+..-..|.+.++.+.+..... +.+
T Consensus 269 ~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e 348 (1251)
T KOG0414|consen 269 VSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEE 348 (1251)
T ss_pred HHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchh
Confidence 4555666655542 34556667778888776533 357777777556678889999999987764221 111
Q ss_pred C-----CchhhhhhHhhhhcCCCchHHHHHHHHHHhhcC--CCCC----CCH-HhHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1092 L-----PENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYG--YDFG----TDY-SGLFKALSHSNYNVRLAAAEALATALD 1159 (2058)
Q Consensus 1092 ~-----~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~~--~~~~----~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~ 1159 (2058)
. .....+...+.--.+|-..-+|--+-++|...- ...+ .++ ...+.-+.|.+..||+.|.+.+..+..
T Consensus 349 ~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 349 LEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHh
Confidence 1 001124444444567888888888888997721 1122 233 455567789999999999999999998
Q ss_pred hCCCch---HHHHHHHHHHHHhhcC----CCCC-CCCCCchhhHHHHHHH---HHhhhhhCCC-------ChHHHHHHHH
Q 000143 1160 EYPDSI---QGSLSTLFSLYIRDIG----LGGD-NVDAGWLGRQGIALAL---HSAADVLRTK-------DLPVIMTFLI 1221 (2058)
Q Consensus 1160 ~~~~~~---~~~l~~L~~~~~~~l~----~~~~-~~~~~~~~R~~~~~al---~~l~~~~~~~-------~~~~l~~~Li 1221 (2058)
.+|=.- ...+..-.+.+.+++. +... ..++....|......+ +.....-... ..+..- .+-
T Consensus 429 ~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~n~~~vi~~~~~~~~~~~~q~~ss~~~~~e~~-~~~ 507 (1251)
T KOG0414|consen 429 RHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSENVKGVIEDAEKDSTTEKNQLESSDNKQEEHC-LLE 507 (1251)
T ss_pred cCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhhhcccceeechhhhhhhccccccccccchhhh-hhh
Confidence 887311 1111111222222211 1100 0001111121110000 0000000000 001111 110
Q ss_pred HhhccCC--CHHHHHHHHHHHHHHHH-hhC-ccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcc
Q 000143 1222 SRALADT--NADVRGRMLNAGIMIID-KHG-RDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK 1297 (2058)
Q Consensus 1222 ~~~L~d~--~~~VR~~al~a~~~~i~-~~g-~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~ 1297 (2058)
..-...+ +..++..+ ...+.. ... ...+...+|++.++|-.. .. + .|.+ ++.++. .|..+.-+.
T Consensus 508 ~~~~s~~~~~~i~q~~~---~vq~l~d~~sf~~~ms~~~~ii~~ll~s~-t~--t--eV~E-~Idfl~-~c~~F~I~g-- 575 (1251)
T KOG0414|consen 508 NEVESVPAENEIMQLKA---LVQFLEDAISFSDEMSEAIPIISQLLFSK-TT--T--EVKE-AIDFLV-RCKQFGIDG-- 575 (1251)
T ss_pred hhhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ch--H--HHHH-HHHHHH-HHHHhCCCc--
Confidence 0001111 11122211 111111 110 123566778888877652 11 1 3433 455443 344443222
Q ss_pred hHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc
Q 000143 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS 1372 (2058)
Q Consensus 1298 i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~-----~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~ 1372 (2058)
-..-+.+|+...-.++.+++.++..|.-.+.-..++. ....+..++..+.. .+.+.+-+--+.+..++..-.++
T Consensus 576 ae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~-~s~~d~~slE~vl~~lv~~~~Id 654 (1251)
T KOG0414|consen 576 AEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLID-ASIGDLTSLEEVLCELVARGYID 654 (1251)
T ss_pred HHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHhCCCcc
Confidence 2344566666666666678998888877766443221 12334444444333 23444444444555555432221
Q ss_pred ccchhchHHHHHHHH--hCCC-CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000143 1373 SLKKYGIAATLREGL--ADRN-SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2058)
Q Consensus 1373 ~l~~~~il~~L~~~l--~~~~-~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~ 1449 (2058)
..++..|-+.. +-.. ....+.+++..++.++.+-.......+..++. ..+++ +..-.-++....-++.
T Consensus 655 ----~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~---iglg~--p~l~~~~L~~~s~i~~ 725 (1251)
T KOG0414|consen 655 ----AAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQ---IGLGE--PRLAVDVLARYSNIVD 725 (1251)
T ss_pred ----HHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHH---hccCc--HHHHHHHHHHHHHhhc
Confidence 13344443322 1111 22344667777777766543322222222221 13333 2221112111111110
Q ss_pred -hhh------------h-hhHHhHHHHHHHh--cc-CCChH-HHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHH----H
Q 000143 1450 -QLS------------A-QGVKLVLPSLLKG--LE-DKAWR-TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE----V 1507 (2058)
Q Consensus 1450 -~l~------------~-~~v~~llp~Ll~~--L~-~~~~~-~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~----~ 1507 (2058)
+.+ . +.+-..+..++.. +. +.+|. +...|+.++..++. .|+.+.. .|+..+.. .
T Consensus 726 ~r~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~-~Pe~la~---~li~~~~~~~f~~ 801 (1251)
T KOG0414|consen 726 PRKLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISM-LPEVLAT---QLIRKLLKQDFES 801 (1251)
T ss_pred ccccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhc-ChHHHHH---HHHHHHHHHHhhh
Confidence 111 0 1112233333322 22 34564 56667888888776 3544332 12222111 1
Q ss_pred h--------cCCC-----HHHHHHHHHHHHHHHhhc-C-chhHHhHHHHHHh---------ccCCCChhHHHHHHHHHh-
Q 000143 1508 L--------TDTH-----PKVQSAGQTALQQVGSVI-K-NPEIASLVPTLLM---------GLTDPNDHTKYSLDILLQ- 1562 (2058)
Q Consensus 1508 L--------~D~~-----~~VR~aA~~aL~~l~~~~-~-~~~i~~lvp~Ll~---------~l~d~~~~vr~al~~L~~- 1562 (2058)
+ .|++ ..+|.....-+.-+|.+. . .-|++.-++.-++ .-.|.+ .++-+....+
T Consensus 802 ~~~E~~~~~~d~~k~~~ltp~~~l~~~lif~vg~vAikqlvyiE~~i~~~~kRr~~~~~~~e~k~~N--~~e~~s~t~~~ 879 (1251)
T KOG0414|consen 802 LECEADTITDDPRKSDALTPERVLKDSLIFIVGDVAIKQLVYIEVCISKEFKRRKIKTELEEKKDKN--QRENLSNTQRE 879 (1251)
T ss_pred hhhhhccccCCcccccccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--chhhhcccccc
Confidence 1 1111 111111111111111110 0 1122222221110 000000 0000000000
Q ss_pred ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh---hCCCCchhhhHhhhhHHHHHhhC----CCCHHH
Q 000143 1563 TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL---VTEPKDMIPYIGLLLPEVKKVLV----DPIPEV 1635 (2058)
Q Consensus 1563 ~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~---l~~~~~l~pyl~~ll~~L~~~l~----d~~~~v 1635 (2058)
+.+-... ....+.+.+.- .+.+..+|+. .++ ...+..+.|.+.+.+. -.+|++
T Consensus 880 ~~~~~e~-------------dlig~tseDd~---~d~i~~icE~eLl~ge----k~lLg~f~piv~e~c~n~~~~sdp~L 939 (1251)
T KOG0414|consen 880 TQFTVEL-------------DLIGGTSEDDL---ADLISGICEKELLYGE----KSLLGRFAPIVVEGCRNPGLFSDPEL 939 (1251)
T ss_pred ccCCccc-------------cccCCCcchhH---HHHHHHHHHHHHhcCh----HHHHHHHHHHHHHHhcCCCcCCCHHH
Confidence 0010000 00111111111 1222333321 111 1234455666666664 346899
Q ss_pred HHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHH
Q 000143 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 1715 (2058)
Q Consensus 1636 R~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~ 1715 (2058)
+.+|.-|+|.+.. +..++...-+|.|+..+...+.+.+|..+..++|+++-.+.. .++..-+.+++.+.|.++.||..
T Consensus 940 q~AAtLaL~klM~-iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpn-lie~~T~~Ly~rL~D~~~~vRkt 1017 (1251)
T KOG0414|consen 940 QAAATLALGKLMC-ISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN-LIEPWTEHLYRRLRDESPSVRKT 1017 (1251)
T ss_pred HHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhccc-ccchhhHHHHHHhcCccHHHHHH
Confidence 9999999998874 334456677888999998778888999999999988755432 46777788999999999999999
Q ss_pred HHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCC
Q 000143 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND 1787 (2058)
Q Consensus 1716 al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~ 1787 (2058)
++..+.++...---. ....++-+-.++.|+++.||+-|-.-++.+.... ..+-.++|.+...+.|.
T Consensus 1018 a~lvlshLILndmiK----VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~--n~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1018 ALLVLSHLILNDMIK----VKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG--NTIYNLLPDILSRLSNG 1083 (1251)
T ss_pred HHHHHHHHHHhhhhH----hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc--cchhhhchHHHHhhccC
Confidence 998888775532111 1223566777899999999998877666664332 34555788887777665
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-07 Score=102.51 Aligned_cols=306 Identities=15% Similarity=0.153 Sum_probs=200.2
Q ss_pred HhHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--
Q 000143 1457 KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-- 1532 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~-~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-- 1532 (2058)
..++|.+.+.+++. .--.+..|..+|..++.+...+..-.. ...+|.++++|.+++..||+++.|||+.++.....
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 35678888888543 344567899999999988766533211 25789999999999999999999999999865331
Q ss_pred hhH--HhHHHHHHhccCCCCh---hHHHH---HHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000143 1533 PEI--ASLVPTLLMGLTDPND---HTKYS---LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2058)
Q Consensus 1533 ~~i--~~lvp~Ll~~l~d~~~---~vr~a---l~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~ 1604 (2058)
.++ ...+..++..+..... .+|.+ +..+...+ -+.-+-..+...+|+|.+++-.+++++-..||.++..+.
T Consensus 193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk-nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK-NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC-CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 122 1223333333332222 23533 33333211 122233456778999999999999999999999998886
Q ss_pred hhhCCCCchhhhHh-hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHH
Q 000143 1605 SLVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAA 1679 (2058)
Q Consensus 1605 ~~l~~~~~l~pyl~-~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa 1679 (2058)
.. ..+.+...++ .+.+.|.+++..++..+..-+.+++|.++.+-..+ .--.+++.+...|.+.. ...|..++
T Consensus 272 Dg--~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~k-e~irKEaC 348 (526)
T COG5064 272 DG--PNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPK-ENIRKEAC 348 (526)
T ss_pred cC--cHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChh-hhhhhhhh
Confidence 52 2222222333 46778999999999999999999999998754333 11245566655566444 46899999
Q ss_pred HHHHHHHHHhchh--H-H-HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHh-c-hhHHHhH--HHHHHHHHHhccCCCH
Q 000143 1680 QGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL-G-VQFQNYL--QQVLPAILDGLADENE 1751 (2058)
Q Consensus 1680 ~~L~~i~~~~g~~--~-l-~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~-g-~~f~pyl--~~ilp~Ll~~L~d~~~ 1751 (2058)
+.++.+..+-... . + ..++|.++..+...+..+|..+++++.+..... + ++...|+ ..++.++...|.-.+-
T Consensus 349 WTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN 428 (526)
T COG5064 349 WTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN 428 (526)
T ss_pred eeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence 9999886554332 1 1 357899999999889999999999987764422 1 2333444 2356666666654333
Q ss_pred HHHHHHHHHHHHHHH
Q 000143 1752 SVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1752 ~VR~~a~~al~~lv~ 1766 (2058)
.+-+.+++++..+.+
T Consensus 429 kiiev~LD~~eniLk 443 (526)
T COG5064 429 KIIEVALDAIENILK 443 (526)
T ss_pred cchhhhHHHHHHHHh
Confidence 345555666665543
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-06 Score=112.54 Aligned_cols=299 Identities=19% Similarity=0.155 Sum_probs=202.0
Q ss_pred hhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc-------chhchHHhHhh
Q 000143 1710 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-------SLPLLLPAVED 1782 (2058)
Q Consensus 1710 ~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~-------~l~~llp~L~~ 1782 (2058)
...|..++.++..++.....+ .-++.++|.++.++.|+...||-.|+.++..++....+- ..+.++|.|..
T Consensus 437 ~~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~ 514 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNH 514 (1431)
T ss_pred chhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHh
Confidence 456778888888888877664 478899999999999999999999999999887765432 23568999999
Q ss_pred hcCC-CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHH
Q 000143 1783 GIFN-DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861 (2058)
Q Consensus 1783 ~l~d-~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR 1861 (2058)
++.| ....+|.+-...++.|.....+ -+. ++.+.++ .. +.+|.+..
T Consensus 515 l~~d~~~~~vRiayAsnla~LA~tA~r-----------------------Fle--~~q~~~~---~g---~~n~~nse-- 561 (1431)
T KOG1240|consen 515 LLNDSSAQIVRIAYASNLAQLAKTAYR-----------------------FLE--LTQELRQ---AG---MLNDPNSE-- 561 (1431)
T ss_pred hhccCccceehhhHHhhHHHHHHHHHH-----------------------HHH--HHHHHHh---cc---cccCcccc--
Confidence 9988 6778888888888887522110 000 0000000 00 01111110
Q ss_pred HHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhchHHHHhhhcCCCChhHH
Q 000143 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRR 1940 (2058)
Q Consensus 1862 ~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~-~l~~llp~L~~~l~d~~~~vR 1940 (2058)
...-.+....+.....++-+.....+.|+...+|++-.+.++.||..+|.. .-.-++++|...|+|++...|
T Consensus 562 -------t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR 634 (1431)
T KOG1240|consen 562 -------TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLR 634 (1431)
T ss_pred -------cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHH
Confidence 000001112223333334444445578888899999999999999999855 456788999999999999899
Q ss_pred HHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC--hhhHHHHHHHHHHhcCCCc--
Q 000143 1941 QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG--MQAIDEIVPTLLHALEDDQ-- 2016 (2058)
Q Consensus 1941 ~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g--~~~~~~ilp~Ll~~L~~~~-- 2016 (2058)
......+..+....|...+. +.++|.|.+++.|+++.|-..|.++|..+++..- +.++-+++...+..|--|+
T Consensus 635 ~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~W 711 (1431)
T KOG1240|consen 635 GAFFDSIVGVSIFVGWRSVS---EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLW 711 (1431)
T ss_pred HHHHhhccceEEEEeeeeHH---HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHH
Confidence 87666555454555655444 4578999999999999999999999999987532 4566677776666666666
Q ss_pred chHHHHHHHHHHHhhcC-----CccchhhhhhhccCCCchhh
Q 000143 2017 TSDTALDGLKQILSVRT-----TAVLPHILPKLVHLPLSYVS 2053 (2058)
Q Consensus 2017 ~~~~al~aL~~i~~~~~-----~~~lp~lip~L~~~p~~~~~ 2053 (2058)
.|..++.-+..+.+.-+ -.+.|.+=|=|.+++++.+.
T Consensus 712 IR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~v~~i~s 753 (1431)
T KOG1240|consen 712 IRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERPVIQIES 753 (1431)
T ss_pred HHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhccHhhhcc
Confidence 46667776666654332 25677766666666666554
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0086 Score=77.57 Aligned_cols=121 Identities=25% Similarity=0.346 Sum_probs=101.4
Q ss_pred cchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000143 1918 ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2058)
Q Consensus 1918 ~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g 1997 (2058)
++++.++.|.+.+.+.......|.+-..+|..++.+.+.+.+.|.++.++|.+.+++.-+|..||-.+..+|..+....+
T Consensus 862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 34678899999999986667789999999999999999999999999999999999999999999999999988876655
Q ss_pred ---hhhHHHHHHHHHHhcCCCc-----chHHHHHHHHHHHhh-cCCccch
Q 000143 1998 ---MQAIDEIVPTLLHALEDDQ-----TSDTALDGLKQILSV-RTTAVLP 2038 (2058)
Q Consensus 1998 ---~~~~~~ilp~Ll~~L~~~~-----~~~~al~aL~~i~~~-~~~~~lp 2038 (2058)
..+++.++|.++..=.|++ .|+.|+.+|..+.+. .....+|
T Consensus 942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~ 991 (1030)
T KOG1967|consen 942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLS 991 (1030)
T ss_pred ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccc
Confidence 3689999999997655544 478999999999883 3344444
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.0014 Score=82.07 Aligned_cols=307 Identities=16% Similarity=0.212 Sum_probs=192.3
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhh
Q 000143 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2058)
Q Consensus 1419 ~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~ 1498 (2058)
..+-+-++..++...+.||..|.-.+-.+.-.++ +.++.-+|.+.+.|+|+++.+..+|+..+..++...|+..-
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYP-eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL---- 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYP-EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL---- 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhh-HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc----
Confidence 4677888889999999999999999888887765 45777889999999999999999999999999988886433
Q ss_pred hHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhcC-chhH-HhHHHHHHhccCCCChhH--HHHHHHHHhcccccc--CC
Q 000143 1499 KIVPKLTEVLTDT--HPKVQSAGQTALQQVGSVIK-NPEI-ASLVPTLLMGLTDPNDHT--KYSLDILLQTTFVNT--VD 1570 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~--~~~VR~aA~~aL~~l~~~~~-~~~i-~~lvp~Ll~~l~d~~~~v--r~al~~L~~~~f~~~--~~ 1570 (2058)
++-|.+++++.++ ++.. +..+.-|+.... +|-+ +.++|.+...+....... =+|+++++....... ..
T Consensus 218 ~LAP~ffkllttSsNNWmL----IKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 218 QLAPLFYKLLVTSSNNWVL----IKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred cccHHHHHHHhccCCCeeh----HHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc
Confidence 4556677776543 3332 334444444332 3443 677777777765443211 267777765422222 23
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2058)
Q Consensus 1571 ~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l 1650 (2058)
..+....+.-|.-.+.|.+++.|+-++-+++.++. +.|..+..+ -..++.++.|.++.+|-.|..-+..++
T Consensus 294 ~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~k--tHp~~Vqa~----kdlIlrcL~DkD~SIRlrALdLl~gmV--- 364 (877)
T KOG1059|consen 294 SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILK--THPKAVQAH----KDLILRCLDDKDESIRLRALDLLYGMV--- 364 (877)
T ss_pred HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhh--hCHHHHHHh----HHHHHHHhccCCchhHHHHHHHHHHHh---
Confidence 34455566667777889999999999988888887 344443333 345677889999999988777766665
Q ss_pred cccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhH---HHHHHHHHHHhHHHh
Q 000143 1651 GEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASV---RDGYLTLFKYLPRSL 1727 (2058)
Q Consensus 1651 g~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~v---R~~al~~l~~la~~~ 1727 (2058)
.++.+-+++..||..+...+...-| ++++..++..+...++.. =+..+..+..++...
T Consensus 365 skkNl~eIVk~LM~~~~~ae~t~yr-------------------dell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~ 425 (877)
T KOG1059|consen 365 SKKNLMEIVKTLMKHVEKAEGTNYR-------------------DELLTRIISICSQSNYQYITDFEWYLSVLVELARLE 425 (877)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHH-------------------HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhcc
Confidence 3445566777777766532222222 333333333332221111 134455666666655
Q ss_pred chhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 000143 1728 GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1728 g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~ 1766 (2058)
|.+ +-..+-..++. +.-..+.+|..+...+..++.
T Consensus 426 ~~~---~G~~I~eQi~D-v~iRV~~iR~fsV~~m~~Ll~ 460 (877)
T KOG1059|consen 426 GTR---HGSLIAEQIID-VAIRVPSIRPFSVSQMSALLD 460 (877)
T ss_pred ccc---hhhHHHHHHHH-HheechhhhHhHHHHHHHHHh
Confidence 532 11222222222 222356677777666665554
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00067 Score=86.22 Aligned_cols=304 Identities=16% Similarity=0.207 Sum_probs=194.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2058)
+...+-+.++.++..|--.|..+++.+ .+++-.+.+.|.+.+.++..+..+|+-|+.+...+....|+.++. +
T Consensus 108 ltNslknDL~s~nq~vVglAL~alg~i---~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~----f 180 (866)
T KOG1062|consen 108 LTNSLKNDLNSSNQYVVGLALCALGNI---CSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH----F 180 (866)
T ss_pred HHHHHHhhccCCCeeehHHHHHHhhcc---CCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH----h
Confidence 344555566667777777777777666 456666788888888888888888888888888888888776653 4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhHHhHHHHHHhccCCCChhHHHHHHHHHhccc-----cccCChhh
Q 000143 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF-----VNTVDAPS 1573 (2058)
Q Consensus 1501 ip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f-----~~~~~~~~ 1573 (2058)
++...+.|.|.|+-|-.++..-+-.+++.-.+ .++..++|.++..+.+ +....+ ++.+..|.
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~-----------l~~~~yspeydv~gi~dPF 249 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQ-----------LTNSGYSPEYDVHGISDPF 249 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-----------HhcCCCCCccCccCCCchH
Confidence 55566778888888888888877777775332 2456666666654432 111111 22344455
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC-CCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1574 l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~-d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
+..-+=.+.+.+...+.+....-..+++.++..-...+... + -.+.+++...+. ++++..|..|+.+||.+...-..
T Consensus 250 LQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~G-n-AILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~ 327 (866)
T KOG1062|consen 250 LQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAG-N-AILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDN 327 (866)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccch-h-HHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCcc
Confidence 54333344555655555566666667777765321111111 1 135556655554 67888999999999988753222
Q ss_pred cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHH
Q 000143 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1653 ~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
...---+..|+..++.|+....|. -..+++.++|++..+|..++.+.-.+...-
T Consensus 328 NirYvaLn~L~r~V~~d~~avqrH---------------------r~tIleCL~DpD~SIkrralELs~~lvn~~----- 381 (866)
T KOG1062|consen 328 NIRYVALNMLLRVVQQDPTAVQRH---------------------RSTILECLKDPDVSIKRRALELSYALVNES----- 381 (866)
T ss_pred ceeeeehhhHHhhhcCCcHHHHHH---------------------HHHHHHHhcCCcHHHHHHHHHHHHHHhccc-----
Confidence 111123445555556555543332 235677889999999999999887765532
Q ss_pred HhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1733 pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~ 1771 (2058)
-+..++.-++..|...+++.|.....-+..+++.|+++
T Consensus 382 -Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 382 -NVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred -cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 23446667777777778889988888888888888765
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00011 Score=93.66 Aligned_cols=208 Identities=21% Similarity=0.229 Sum_probs=162.0
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2058)
Q Consensus 1334 ~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~ 1413 (2058)
+..+++..+++...+.+++..|.+++++++.+++.+..... -..++..+.....+..+...|..++..+..+++++-.+
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDD-LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhh-HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 45668888888888888899999999999999998643321 12455555554433336678888999999999987655
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----------------hHHhHHHHHHHhccCCChHHHHH
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----------------GVKLVLPSLLKGLEDKAWRTKQS 1477 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~----------------~v~~llp~Ll~~L~~~~~~~R~~ 1477 (2058)
-.|...+++..++..++| +.+...+.++++.++...+.. -+..++|.+++...+.+-..|..
T Consensus 265 ~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~ 342 (415)
T PF12460_consen 265 GHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN 342 (415)
T ss_pred CCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence 567778888889999988 778889999999988663321 12568899999988776668888
Q ss_pred HHHHHHHHHhhChhh-HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHh
Q 000143 1478 SVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLM 1544 (2058)
Q Consensus 1478 a~~~Lg~la~~~p~~-l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~~i~~lvp~Ll~ 1544 (2058)
.+.+|..+..+.|.. +.++++.++|.+++.|+-+++.|+.++..+|..+.+.-. .++++.++|.+++
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 899999999999976 678999999999999998899999999999999987542 1355667776664
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.0012 Score=82.83 Aligned_cols=236 Identities=15% Similarity=0.183 Sum_probs=129.8
Q ss_pred hhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc
Q 000143 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM 1331 (2058)
Q Consensus 1252 ~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~ 1331 (2058)
...|-+-+..+|... .+ .+|..|+-++-.+.-.++. .++..+++|.+-|.||++.|+.++...+-.|.+..
T Consensus 142 ARDLa~Dv~tLL~ss----kp--YvRKkAIl~lykvFLkYPe---Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSS----KP--YVRKKAILLLYKVFLKYPE---ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred hHHHHHHHHHHHhcC----ch--HHHHHHHHHHHHHHHhhhH---hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC
Confidence 345555555665541 23 6999999999888865543 36788999999999999999999888888888877
Q ss_pred ccchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhhCccccc----hhchHHHHHHHHhCCCCHHHHHHHHH-HHHH
Q 000143 1332 QDEAPTLVSRLLDQLMKSD-KYGERRGAAFGLAGVVKGFGISSLK----KYGIAATLREGLADRNSAKRREGALL-AFEC 1405 (2058)
Q Consensus 1332 ~~~~~~~v~~Ll~~L~~~~-~~~vR~~Aa~~L~~l~~~~g~~~l~----~~~il~~L~~~l~~~~~~~~R~~al~-al~~ 1405 (2058)
+...-++.|.++..|..+. +|. |-.+++-+|.-..- ...+++-|.+.+.+. .|+. .+++
T Consensus 213 PknyL~LAP~ffkllttSsNNWm--------LIKiiKLF~aLtplEPRLgKKLieplt~li~sT-------~AmSLlYEC 277 (877)
T KOG1059|consen 213 PQNYLQLAPLFYKLLVTSSNNWV--------LIKLLKLFAALTPLEPRLGKKLIEPITELMEST-------VAMSLLYEC 277 (877)
T ss_pred CcccccccHHHHHHHhccCCCee--------hHHHHHHHhhccccCchhhhhhhhHHHHHHHhh-------HHHHHHHHH
Confidence 6666677788888777654 453 22233333211100 114555566555443 1111 1111
Q ss_pred HHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHH
Q 000143 1406 LCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAM 1485 (2058)
Q Consensus 1406 L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~l 1485 (2058)
+-....- .+...+.|....+.-+ +..|-..+.|.+...|+.++.+++.+
T Consensus 278 vNTVVa~-----------s~s~g~~d~~asiqLC--------------------vqKLr~fiedsDqNLKYlgLlam~KI 326 (877)
T KOG1059|consen 278 VNTVVAV-----------SMSSGMSDHSASIQLC--------------------VQKLRIFIEDSDQNLKYLGLLAMSKI 326 (877)
T ss_pred HHHheee-----------hhccCCCCcHHHHHHH--------------------HHHHhhhhhcCCccHHHHHHHHHHHH
Confidence 1110000 1111122222211111 11122234455666666666666666
Q ss_pred HhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCC
Q 000143 1486 AYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP 1549 (2058)
Q Consensus 1486 a~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~ 1549 (2058)
+..-|+.++.+.. .++++|.|.++.+|-.|+.-+..+.. ...+.+|+..|+..+.+.
T Consensus 327 ~ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdLl~gmVs---kkNl~eIVk~LM~~~~~a 383 (877)
T KOG1059|consen 327 LKTHPKAVQAHKD----LILRCLDDKDESIRLRALDLLYGMVS---KKNLMEIVKTLMKHVEKA 383 (877)
T ss_pred hhhCHHHHHHhHH----HHHHHhccCCchhHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhc
Confidence 6666655554422 23456666667777666666555543 334555555555554433
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-05 Score=98.36 Aligned_cols=273 Identities=18% Similarity=0.179 Sum_probs=180.1
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccC
Q 000143 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817 (2058)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~ 1817 (2058)
+...+.....|.+..||..|.+++-.+-+.+. .-..+.....+.+.|++..||.+|++++.-+.....+.
T Consensus 199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k--L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~-------- 268 (823)
T KOG2259|consen 199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFK--LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAP-------- 268 (823)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHhhccccc--ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCc--------
Confidence 33446677788899999999999877765332 11235666778889999999999999887764322110
Q ss_pred CCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhH-HHHHH--------
Q 000143 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMN-------- 1888 (2058)
Q Consensus 1818 ~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l-~~L~~-------- 1888 (2058)
.+.++. .....+..+..++....|.+..||-.|...++.+-.....-+...+ ..++.
T Consensus 269 -~e~e~~-------------e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a 334 (823)
T KOG2259|consen 269 -LERESE-------------EEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA 334 (823)
T ss_pred -ccchhh-------------hhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc
Confidence 000000 0112344555666666677777776666555544321111111110 01111
Q ss_pred ------------------------------------------HHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHH
Q 000143 1889 ------------------------------------------TLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIP 1926 (2058)
Q Consensus 1889 ------------------------------------------~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp 1926 (2058)
.++..+.|+-+++|.+|...++.|+.. .+.+....+.
T Consensus 335 hkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~ald 413 (823)
T KOG2259|consen 335 HKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVRALD 413 (823)
T ss_pred ccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHH
Confidence 122334455679999999999998853 2345567788
Q ss_pred HHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhhHHHHHH
Q 000143 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006 (2058)
Q Consensus 1927 ~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp 2006 (2058)
.|.++++|+..++|..+..+|..|.....- -+..++.+.+.+.|.+++||++.-.-++... .....-++-.+.
T Consensus 414 fLvDMfNDE~~~VRL~ai~aL~~Is~~l~i------~eeql~~il~~L~D~s~dvRe~l~elL~~~~-~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 414 FLVDMFNDEIEVVRLKAIFALTMISVHLAI------REEQLRQILESLEDRSVDVREALRELLKNAR-VSDLECIDMCVA 486 (823)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhee------cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 899999999999999999999987766422 1456788888899999999999987776652 222234667777
Q ss_pred HHHHhcCC-CcchHHHHHHHHHHHhhcCCccchhhhh
Q 000143 2007 TLLHALED-DQTSDTALDGLKQILSVRTTAVLPHILP 2042 (2058)
Q Consensus 2007 ~Ll~~L~~-~~~~~~al~aL~~i~~~~~~~~lp~lip 2042 (2058)
.|+..|.- |..++..+.+++.|=++++..++.+.-.
T Consensus 487 ~lL~~L~kyPqDrd~i~~cm~~iGqnH~~lv~s~m~r 523 (823)
T KOG2259|consen 487 HLLKNLGKYPQDRDEILRCMGRIGQNHRRLVLSNMGR 523 (823)
T ss_pred HHHHHhhhCCCCcHHHHHHHHHHhccChhhHHHHHHH
Confidence 88888864 6778899999999998887777665443
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.019 Score=78.01 Aligned_cols=148 Identities=17% Similarity=0.140 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2058)
Q Consensus 1334 ~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~ 1413 (2058)
.+..++..++..+. ++...+|..|..||..++..- +..+...++-..+...+.|. ...+|++|+..+|...-...
T Consensus 813 sfD~yLk~Il~~l~-e~~ialRtkAlKclS~ive~D-p~vL~~~dvq~~Vh~R~~Ds-sasVREAaldLvGrfvl~~~-- 887 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLG-ENAIALRTKALKCLSMIVEAD-PSVLSRPDVQEAVHGRLNDS-SASVREAALDLVGRFVLSIP-- 887 (1692)
T ss_pred hhHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcC-hHhhcCHHHHHHHHHhhccc-hhHHHHHHHHHHhhhhhccH--
Confidence 34566666666554 556889999999999998753 23333335555555566665 78899999998886654433
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh-HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~-v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~ 1488 (2058)
.++.+.-..+.....|+...||+.++..++.+....+... +..+.-.++.+..|.+-.++..+++.+-.+...
T Consensus 888 --e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 888 --ELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred --HHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 3444555666778889999999999999999988777643 356677777888888888888888888887754
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.4e-05 Score=96.24 Aligned_cols=390 Identities=18% Similarity=0.192 Sum_probs=218.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-Hh
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KL 1458 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~ 1458 (2058)
+.++..-..++ +|..|.-|+...+.+ .+......+...+..+++|.++.||.++.-+...+...-..... ..
T Consensus 88 vnt~~kD~~d~-np~iR~lAlrtm~~l------~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~g 160 (734)
T KOG1061|consen 88 VNTFLKDCEDP-NPLIRALALRTMGCL------RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSG 160 (734)
T ss_pred hhhhhccCCCC-CHHHHHHHhhceeeE------eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccc
Confidence 33333334444 888888776655433 35566667788888999999999999998888777543333222 45
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch--hH
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI 1535 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~-~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~--~i 1535 (2058)
+++.+...+.|.++.+-..|+.++..+.+..+. ......+.++..++..+++-+. ..-+..|..++....++ +.
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~E---W~qi~IL~~l~~y~p~d~~ea 237 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTE---WGQIFILDCLAEYVPKDSREA 237 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhh---hhHHHHHHHHHhcCCCCchhH
Confidence 677777778888888888888888888877653 2222223444445554443222 22233344444433332 23
Q ss_pred HhHHHHHHhccCCCChhHH-HHHHHHHhc-cc----------------------cccCChhhHhhHHHHHHHh---h---
Q 000143 1536 ASLVPTLLMGLTDPNDHTK-YSLDILLQT-TF----------------------VNTVDAPSLALLVPIVHRG---L--- 1585 (2058)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~vr-~al~~L~~~-~f----------------------~~~~~~~~l~~llp~L~~~---L--- 1585 (2058)
..++..+...+...+..+. .++..+... .+ ......-++..+--++.+. +
T Consensus 238 ~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~ 317 (734)
T KOG1061|consen 238 EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVE 317 (734)
T ss_pred HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhH
Confidence 3444444443333332211 111111110 00 0000000111111111110 0
Q ss_pred --------cCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccc
Q 000143 1586 --------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD 1657 (2058)
Q Consensus 1586 --------~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~ 1657 (2058)
.|+ --++..-.+++..++. ..-+++++..+.....+-+.+.-..+++|+|.++....+. .+
T Consensus 318 ~~~Ff~kynDP-iYvK~eKleil~~la~--------~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~--~~ 386 (734)
T KOG1061|consen 318 IKVFFCKYNDP-IYVKLEKLEILIELAN--------DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS--ND 386 (734)
T ss_pred hHeeeeecCCc-hhhHHHHHHHHHHHhh--------HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh--hh
Confidence 111 1233333333333322 1134456677777777777777788999999999877665 78
Q ss_pred hHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhcc-CChhHHHHHHHHHHHhHHHhchhHHHhHH
Q 000143 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQNYLQ 1736 (2058)
Q Consensus 1658 llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~-~~~~vR~~al~~l~~la~~~g~~f~pyl~ 1736 (2058)
++..|++.++...++ +.+.+...+-.+.+.+... .+.+.+.+.....+ .+|..|.+.++.+|..+..+.+ ..
T Consensus 387 cv~~lLell~~~~~y-vvqE~~vvi~dilRkyP~~-~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~-----a~ 459 (734)
T KOG1061|consen 387 CVSILLELLETKVDY-VVQEAIVVIRDILRKYPNK-YESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN-----AL 459 (734)
T ss_pred hHHHHHHHHhhcccc-eeeehhHHHHhhhhcCCCc-hhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc-----HH
Confidence 999999999865555 3344455555665555443 36666666655554 3788999999999998888765 34
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCC-CCHHHHHHHHH
Q 000143 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFN-DNWRIRQSSVE 1797 (2058)
Q Consensus 1737 ~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d-~~~~vR~sav~ 1797 (2058)
.++..+++...|+...|+..-+.|.-.+.-..+...-+.+-..|..+..| ++..+|-.++-
T Consensus 460 elL~~f~en~~dE~~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~ 521 (734)
T KOG1061|consen 460 ELLESFLENFKDETAEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLI 521 (734)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHH
Confidence 57788888899998888877666554443333322222222233333333 34456655543
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0013 Score=83.69 Aligned_cols=291 Identities=17% Similarity=0.203 Sum_probs=188.7
Q ss_pred chHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 000143 1378 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~---~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
+++-.+...++++= +.-+--.|+.++|.+ ++. .....+.|.+-+.+...++.||+.|.-|+-++....+ +
T Consensus 103 dvllLltNslknDL~s~nq~vVglAL~alg~i---~s~---EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~ 175 (866)
T KOG1062|consen 103 DLLLLLTNSLKNDLNSSNQYVVGLALCALGNI---CSP---EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-D 175 (866)
T ss_pred HHHHHHHHHHHhhccCCCeeehHHHHHHhhcc---CCH---HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-h
Confidence 45555555555432 222333344444444 332 3345678888888889999999999999998876644 4
Q ss_pred hHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcC---------------CCHHHHHHH
Q 000143 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD---------------THPKVQSAG 1519 (2058)
Q Consensus 1455 ~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D---------------~~~~VR~aA 1519 (2058)
.+..+++..-+.|.+.+..+-.+++..+-.|+...|+.+. |+..++|.++..|.+ ++|-.+-..
T Consensus 176 l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~-~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 176 LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALS-YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 5677888888899998888888889999999988775543 445566666555431 347788888
Q ss_pred HHHHHHHHhhcCchhHHhHHHHHHhcc-C--CCChhH-----HHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHH
Q 000143 1520 QTALQQVGSVIKNPEIASLVPTLLMGL-T--DPNDHT-----KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591 (2058)
Q Consensus 1520 ~~aL~~l~~~~~~~~i~~lvp~Ll~~l-~--d~~~~v-----r~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~ 1591 (2058)
++.|+-++.. ++...+.+..++.-+ . |.+..+ =+|+.++.. -+...+-...-+.+|.+.+..++.+
T Consensus 255 LrlLriLGq~--d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~----I~~~~~LrvlainiLgkFL~n~d~N 328 (866)
T KOG1062|consen 255 LRLLRILGQN--DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMD----IRSNSGLRVLAINILGKFLLNRDNN 328 (866)
T ss_pred HHHHHHhcCC--CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHh----ccCCchHHHHHHHHHHHHhcCCccc
Confidence 8888888774 444444444333322 1 112211 145555433 1222222334466777888877778
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCC
Q 000143 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNS 1671 (2058)
Q Consensus 1592 vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~ 1671 (2058)
+|+.|...+..... .++..+..|- ..+..+++|++..+|..|.+-.-.++. +.....++..|+++|.+. +
T Consensus 329 irYvaLn~L~r~V~--~d~~avqrHr----~tIleCL~DpD~SIkrralELs~~lvn---~~Nv~~mv~eLl~fL~~~-d 398 (866)
T KOG1062|consen 329 IRYVALNMLLRVVQ--QDPTAVQRHR----STILECLKDPDVSIKRRALELSYALVN---ESNVRVMVKELLEFLESS-D 398 (866)
T ss_pred eeeeehhhHHhhhc--CCcHHHHHHH----HHHHHHhcCCcHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHhc-c
Confidence 88888777776655 3544444443 345667789999999988887777764 334556777788888755 4
Q ss_pred hHHHhhHHHHHHHHHHHhchh
Q 000143 1672 NVERSGAAQGLSEVLAALGTV 1692 (2058)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~ 1692 (2058)
.+.+...+..+.++++.+.++
T Consensus 399 ~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 399 EDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred HHHHHHHHHHHHHHHHhcCCc
Confidence 557777888888888777665
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00018 Score=91.79 Aligned_cols=310 Identities=18% Similarity=0.199 Sum_probs=193.8
Q ss_pred CHHHHHHHHHHHHHHHHHhccc-----chhhHHH-HHHHHHHHcC-----CC--CHHHHHHHHHHHHHHHHhhhhhhHHh
Q 000143 1392 SAKRREGALLAFECLCEKLGRL-----FEPYVIQ-MLPLLLVAFS-----DQ--VVAVREAAECAARAMMSQLSAQGVKL 1458 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~~-----~~p~l~~-llp~Ll~~l~-----D~--~~~VR~aA~~al~~l~~~l~~~~v~~ 1458 (2058)
+.......+.++..+.+..... ..-|... ++|.+++..- +. ++.+=..+...++.++..++.+.-..
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555566666666666554322 2334443 6777665542 12 35677777888888888888876555
Q ss_pred HHHHHHHhcc----------CCC---hHHHHHHHHHHHHHHhhChhh-HhhhhhhHHHHHHHHhc-CCCHHHHHHHHHHH
Q 000143 1459 VLPSLLKGLE----------DKA---WRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLT-DTHPKVQSAGQTAL 1523 (2058)
Q Consensus 1459 llp~Ll~~L~----------~~~---~~~R~~a~~~Lg~la~~~p~~-l~~~L~~Iip~L~~~L~-D~~~~VR~aA~~aL 1523 (2058)
++..+...+. +.. +..+. .+..+..+..+.++. ..+....++..+..... ..++..|.++++++
T Consensus 136 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~l 214 (415)
T PF12460_consen 136 ILDELYSLFLSPKSFSPFQPSSSTISEQQSR-LVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLL 214 (415)
T ss_pred HHHHHHHHHccccccCCCCcccccccccccc-HHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 5555554432 122 12222 233333333333332 22355566777666643 34589999999999
Q ss_pred HHHHhhcCch-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000143 1524 QQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2058)
Q Consensus 1524 ~~l~~~~~~~-~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~ 1602 (2058)
+.+..-+.+. .+..++..+...+.. ......+..+.+++.+
T Consensus 215 a~LvNK~~~~~~l~~~l~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~W 256 (415)
T PF12460_consen 215 ASLVNKWPDDDDLDEFLDSLLQSISS--------------------------------------SEDSELRPQALEILIW 256 (415)
T ss_pred HHHHcCCCChhhHHHHHHHHHhhhcc--------------------------------------cCCcchhHHHHHHHHH
Confidence 9998765432 345555544443300 0111223333334433
Q ss_pred HHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhc----------------ccCccchHHHHHhhc
Q 000143 1603 MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG----------------EENFPDLVSWLLDAL 1666 (2058)
Q Consensus 1603 L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg----------------~~~~~~llp~L~~~L 1666 (2058)
+++.+--.. .|....++..+..++.| +++...++++++.+..-.. ..+|..++|.+++..
T Consensus 257 i~KaLv~R~--~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~ 332 (415)
T PF12460_consen 257 ITKALVMRG--HPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGF 332 (415)
T ss_pred HHHHHHHcC--CchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHH
Confidence 333211000 12334456666666666 6677888888888775311 115677999999988
Q ss_pred ccCCChHHHhhHHHHHHHHHHHhchh----HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHH
Q 000143 1667 KSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI 1742 (2058)
Q Consensus 1667 ~~d~~~~~R~~aa~~L~~i~~~~g~~----~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~L 1742 (2058)
+...+. .|.....+|+.+++.+..+ ++++++|-+++.+.-+++.++.+++.++..+.....+-+.+|+..++|.+
T Consensus 333 ~~~~~~-~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~L 411 (415)
T PF12460_consen 333 KEADDE-IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRL 411 (415)
T ss_pred hhcChh-hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 754433 7888899999999988876 56889999999999999999999999999998888888899999999999
Q ss_pred HHh
Q 000143 1743 LDG 1745 (2058)
Q Consensus 1743 l~~ 1745 (2058)
++.
T Consensus 412 L~l 414 (415)
T PF12460_consen 412 LKL 414 (415)
T ss_pred Hhc
Confidence 863
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.0097 Score=75.11 Aligned_cols=294 Identities=20% Similarity=0.211 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHH
Q 000143 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDG 1715 (2058)
Q Consensus 1636 R~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~ 1715 (2058)
-..|.-|+|.+-..-|. .+...|.+.|++.+...+|.+++-+||-...+.... ++...+...+...+.-.-++
T Consensus 396 EGGalyAlGLIhA~hG~----~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~---eiYe~lKevLy~D~AvsGEA 468 (929)
T KOG2062|consen 396 EGGALYALGLIHANHGR----GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE---EIYEKLKEVLYNDSAVSGEA 468 (929)
T ss_pred ccchhhhhhccccCcCc----cHHHHHHHHHHhccchhhhhhhhhhccchhcccccH---HHHHHHHHHHhccchhhhhH
Confidence 45677788877665554 377778888887777778999888887544332222 33333444444444333344
Q ss_pred HHHHHHHhHHHhchhHHHhHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHH
Q 000143 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQS 1794 (2058)
Q Consensus 1716 al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d-~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~s 1794 (2058)
+--.+|-+...... ...+.-++..-.+ ..+.+.....-.+. +..|+.. ...=|.+.+.+.|.++-.|.+
T Consensus 469 Agi~MGl~mlGt~~------~eaiedm~~Ya~ETQHeki~RGl~vGia--L~~ygrq--e~Ad~lI~el~~dkdpilR~~ 538 (929)
T KOG2062|consen 469 AGIAMGLLMLGTAN------QEAIEDMLTYAQETQHEKIIRGLAVGIA--LVVYGRQ--EDADPLIKELLRDKDPILRYG 538 (929)
T ss_pred HHHhhhhHhhCcCc------HHHHHHHHHHhhhhhHHHHHHHHHHhHH--HHHhhhh--hhhHHHHHHHhcCCchhhhhh
Confidence 44444433221111 1223333333222 12333222211111 1223322 123355666677788888887
Q ss_pred HHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHHHh
Q 000143 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM-VRSDVSLSVRQAALHVWKTIVA 1873 (2058)
Q Consensus 1795 av~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~-~~~D~~~~VR~aA~~~l~~lv~ 1873 (2058)
.+-.++. .|+ |.. .+..+..|+. ..+|.+..||++|...++-++-
T Consensus 539 Gm~t~al-Ay~--GTg-------------------------------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 539 GMYTLAL-AYV--GTG-------------------------------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLF 584 (929)
T ss_pred hHHHHHH-HHh--ccC-------------------------------chhhHHHhhcccccccchHHHHHHHHHheeeEe
Confidence 6544432 122 111 0122222322 3679999999999988877665
Q ss_pred hChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHh
Q 000143 1874 NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMAS 1953 (2058)
Q Consensus 1874 ~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~ 1953 (2058)
..| +.+|..++.+. .+-|+.+|..++-+||-.|...|.. ..+..|..+.+|+..-|||++|++++-|+.+
T Consensus 585 ~dp----~~~~s~V~lLs---es~N~HVRyGaA~ALGIaCAGtG~~---eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 585 RDP----EQLPSTVSLLS---ESYNPHVRYGAAMALGIACAGTGLK---EAINLLEPLTSDPVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred cCh----hhchHHHHHHh---hhcChhhhhhHHHHHhhhhcCCCcH---HHHHHHhhhhcChHHHHHHHHHHHHHHHHHh
Confidence 444 34455555542 3458999999999999988766644 4444555556677788999999999988777
Q ss_pred hChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1954 AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFST 1991 (2058)
Q Consensus 1954 ~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~ 1991 (2058)
..+ ++.|-+..+...+.+.+.|.+.++---.-..++.
T Consensus 655 ~t~-~~~pkv~~frk~l~kvI~dKhEd~~aK~GAilAq 691 (929)
T KOG2062|consen 655 QTE-QLCPKVNGFRKQLEKVINDKHEDGMAKFGAILAQ 691 (929)
T ss_pred ccc-ccCchHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 654 4556667778888888888877654433333333
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-06 Score=84.16 Aligned_cols=93 Identities=26% Similarity=0.350 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHH
Q 000143 1395 RREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474 (2058)
Q Consensus 1395 ~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~ 1474 (2058)
.|.+++.++..++..++..+.+|+..++|.++.++.|++..||..|++++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL------------------------------ 51 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEAL------------------------------ 51 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH------------------------------
Confidence 58889999999999888878888888888888887777666666555554
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000143 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2058)
Q Consensus 1475 R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2058)
..++......+-+++++|++.|.+.+.|+++.||.+| +.|.++
T Consensus 52 --------~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 52 --------YNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 4455555556667889999999999999999999987 444443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00034 Score=89.25 Aligned_cols=361 Identities=13% Similarity=0.156 Sum_probs=224.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
..++.+++.++|+++.+|..|.+.++.+- -+..+..+..++...+.|.+.-+|+.+......+-...++.... ..
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~---v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~--~g 160 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLR---VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVED--SG 160 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEe---ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccc--cc
Confidence 46678888999999999999988776541 12234678888999999999999999888887776655554443 37
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-h---hHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhH
Q 000143 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-P---EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1500 Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~---~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l 1574 (2058)
+++.|...+.|++|.|-..|..+|..+.+.-.+ . ....++..++.++.+-++--+ ..++.+.. +.+... ...
T Consensus 161 l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~--y~p~d~-~ea 237 (734)
T KOG1061|consen 161 LVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAE--YVPKDS-REA 237 (734)
T ss_pred hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh--cCCCCc-hhH
Confidence 788888889999999999999999999886542 1 125566666666665544333 34444443 333222 223
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~ 1654 (2058)
..++..+...+...+..+...+.+.+-.+...+.+ -...++..+-+.+..++..+. ++...+.+-++.+.....+ +
T Consensus 238 ~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~--~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~ 313 (734)
T KOG1061|consen 238 EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ--VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-I 313 (734)
T ss_pred HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH--HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-H
Confidence 34555555555555554544444444443332111 111233344455555554444 8888888888777765433 2
Q ss_pred ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHh
Q 000143 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 1734 (2058)
Q Consensus 1655 ~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~py 1734 (2058)
+..-+..++-. .+|+-+ +...-.+++..++. .+.+.+++.++.....+-+...-..++.++|.++.-..+.
T Consensus 314 ~~~~~~~Ff~k-ynDPiY-vK~eKleil~~la~---~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---- 384 (734)
T KOG1061|consen 314 LKVEIKVFFCK-YNDPIY-VKLEKLEILIELAN---DANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---- 384 (734)
T ss_pred HHhHhHeeeee-cCCchh-hHHHHHHHHHHHhh---HhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh----
Confidence 22111111100 023333 33333444443332 2345567777777777777777777889999988766543
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCC-CCHHHHHHHHHHHHHHH
Q 000143 1735 LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFN-DNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1735 l~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d-~~~~vR~sav~ll~~Ll 1803 (2058)
+..++.++.++.-....|...+...++.+...|.... +.+.+.+...+.. .+++.|.+-+.++|...
T Consensus 385 -~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~-~~vv~~l~~~~~sl~epeak~amiWilg~y~ 452 (734)
T KOG1061|consen 385 -NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKY-ESVVAILCENLDSLQEPEAKAALIWILGEYA 452 (734)
T ss_pred -hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCch-hhhhhhhcccccccCChHHHHHHHHHHhhhh
Confidence 5678888888886666677777777787777776542 4455555544433 35677887777787764
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0055 Score=74.75 Aligned_cols=461 Identities=14% Similarity=0.142 Sum_probs=209.8
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCCh-hHH-HHHHHHHhccccccCChhhHhh
Q 000143 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND-HTK-YSLDILLQTTFVNTVDAPSLAL 1576 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~-~vr-~al~~L~~~~f~~~~~~~~l~~ 1576 (2058)
.+.=.+.++.+..++..|+....++..+.....+--+ ....+++-++...+ .++ .|+..|.. -+++...-.
T Consensus 65 ~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvlm--~tssiMkD~~~g~~~~~kp~AiRsL~~-----Vid~~tv~~ 137 (898)
T COG5240 65 NLFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVLM--GTSSIMKDLNGGVPDDVKPMAIRSLFS-----VIDGETVYD 137 (898)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhhH--HHHHHHHhhccCCccccccHHHHHHHH-----hcCcchhhh
Confidence 4555677888999999999999999888765432211 11223332222211 222 45555543 122222223
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCC-CchhhhHhhhhHHHHHhhCCCCH--------H-HHHHHHHHHHHH
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYIGLLLPEVKKVLVDPIP--------E-VRSVAARAIGSL 1646 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~-~~l~pyl~~ll~~L~~~l~d~~~--------~-vR~~a~~aLg~l 1646 (2058)
+-.++..++-++++.++..|.-.- .+++... .....|....-.....+-+-|+. + .--.-..++|.+
T Consensus 138 ~er~l~~a~Vs~~~a~~saalv~a---YhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlL 214 (898)
T COG5240 138 FERYLNQAFVSTSMARRSAALVVA---YHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLL 214 (898)
T ss_pred HHHHhhhhccccchhhhhhHHHHh---hhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHH
Confidence 334444555566666655443211 1111111 12333444444444333222110 0 011224456665
Q ss_pred HHhhcccCccchHHHHHhhcccCCChHHHhhH---HHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHh
Q 000143 1647 IRGMGEENFPDLVSWLLDALKSDNSNVERSGA---AQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL 1723 (2058)
Q Consensus 1647 ~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~a---a~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~l 1723 (2058)
...-..+.+ .+-.+++.+.....-....+. .....+++.. ..+.+..+.|.+-.-+.+.-..|.-.+..++..+
T Consensus 215 yq~kr~dkm--a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~-n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~ 291 (898)
T COG5240 215 YQSKRTDKM--AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE-NSQALLQLRPFLNSWLSDKFEMVFLEAARAVCAL 291 (898)
T ss_pred HHHhcccHH--HHHHHHHHhhcccccccchhheehHHHHHHHHHh-ChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 543222211 112222333211111001111 1111222111 1224455666666666665556666666666665
Q ss_pred HHH-hchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1724 PRS-LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1724 a~~-~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
+.. .|.+ ++.+.+..+-..|.......|-.|++.+.++...+... +...-|.++..+.|.|..|-..|+. .|
T Consensus 292 ~~~nv~~~---~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k-v~vcN~evEsLIsd~Nr~IstyAIT---tL 364 (898)
T COG5240 292 SEENVGSQ---FVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK-VSVCNKEVESLISDENRTISTYAIT---TL 364 (898)
T ss_pred HHhccCHH---HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce-eeecChhHHHHhhcccccchHHHHH---HH
Confidence 543 3665 45666777777777777778889999998887665433 4445677888888777666555443 33
Q ss_pred HHHhhCCccc---------ccccCCCCCCCc--chHHHHHHHHHHhChhhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHH
Q 000143 1803 LFKVAGTSGK---------ALLEGGSDDEGA--STEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKT 1870 (2058)
Q Consensus 1803 l~~~~g~~~k---------~~~~~~~e~~~~--~~e~~~~~l~~~Lg~~~~~~vL~~L~~~-~~D~~~~VR~aA~~~l~~ 1870 (2058)
+.. |.... ..+.+.+ |++ ..-.+.+.+.-.+... ....+.-|-.. .++.....+..+++++..
T Consensus 365 LKT--Gt~e~idrLv~~I~sfvhD~S--D~FKiI~ida~rsLsl~Fp~k-~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd 439 (898)
T COG5240 365 LKT--GTEETIDRLVNLIPSFVHDMS--DGFKIIAIDALRSLSLLFPSK-KLSYLDFLGSSLLQEGGLEFKKYMVDAISD 439 (898)
T ss_pred HHc--CchhhHHHHHHHHHHHHHhhc--cCceEEeHHHHHHHHhhCcHH-HHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 211 11000 0000000 011 0111111221111111 11122222111 122233344444444444
Q ss_pred HHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchh-hchHHHHhhhcCCCChhHHHHHHHHHHH
Q 000143 1871 IVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL-PSIIPILSRGLKDPSASRRQGVCIGLSE 1949 (2058)
Q Consensus 1871 lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l-~~llp~L~~~l~d~~~~vR~~a~~aL~e 1949 (2058)
++.+.|..-...+.. +.....|..+ -+.+.+.||-+.+.....-- ..++-.+.+.+-=++.-+|.++..||..
T Consensus 440 ~~~~~p~skEraLe~----LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLsk 513 (898)
T COG5240 440 AMENDPDSKERALEV----LCTFIEDCEY--HQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSK 513 (898)
T ss_pred HHhhCchHHHHHHHH----HHHHHhhcch--hHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444332222222 2222232222 23344444444333221111 1222222222222345588888888876
Q ss_pred HHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1950 VMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1950 ii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~ 1993 (2058)
..-..... +. ...+...+..+++|.|.+||+.|..++..+-
T Consensus 514 f~ln~~d~-~~--~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 514 FALNISDV-VS--PQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hccCcccc-cc--HHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 55443321 11 1567788888999999999999999887764
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=5e-05 Score=94.80 Aligned_cols=242 Identities=18% Similarity=0.079 Sum_probs=153.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000143 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2058)
Q Consensus 1337 ~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p 1416 (2058)
..++.++..+..+++..++..++.++... - ....++.+.+.+.+. +..+|.++..+++.+..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~---~------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~i~~-------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ---E------DALDLRSVLAVLQAG-PEGLCAGIQAALGWLGG-------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc---C------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCc--------
Confidence 34556666665555666666655555311 0 112367777777776 67788888887765432
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhh
Q 000143 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2058)
Q Consensus 1417 ~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2058)
....+.+...+.++++.||.++..+++.... .-.+.+...+++.+..+|..|+.++|.+..
T Consensus 116 --~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------- 176 (410)
T TIGR02270 116 --RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--------DPGPALEAALTHEDALVRAAALRALGELPR--------- 176 (410)
T ss_pred --hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc---------
Confidence 2455677777888899999888877765311 124566677788899999999999987753
Q ss_pred hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhh
Q 000143 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2058)
Q Consensus 1497 L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~ 1576 (2058)
...+|.|...+.|.++.||.+|+.++..++. + .-++.+.....++...++..+..+.... . ...
T Consensus 177 -~~a~~~L~~al~d~~~~VR~aA~~al~~lG~----~---~A~~~l~~~~~~~g~~~~~~l~~~lal~-----~---~~~ 240 (410)
T TIGR02270 177 -RLSESTLRLYLRDSDPEVRFAALEAGLLAGS----R---LAWGVCRRFQVLEGGPHRQRLLVLLAVA-----G---GPD 240 (410)
T ss_pred -ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC----H---hHHHHHHHHHhccCccHHHHHHHHHHhC-----C---chh
Confidence 2455566778999999999999999988764 1 2233444433444444432222211100 0 113
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~ 1647 (2058)
.++.|...+++.. +|..++.++|.+. ++ ..++.|+..+.|+. ++..|.+++..|.
T Consensus 241 a~~~L~~ll~d~~--vr~~a~~AlG~lg----~p--------~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 241 AQAWLRELLQAAA--TRREALRAVGLVG----DV--------EAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred HHHHHHHHhcChh--hHHHHHHHHHHcC----Cc--------chHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 5666667777654 7888777777653 32 25666777776653 7788888887776
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00048 Score=86.22 Aligned_cols=276 Identities=21% Similarity=0.215 Sum_probs=170.1
Q ss_pred HHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHH
Q 000143 1236 MLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEA 1315 (2058)
Q Consensus 1236 al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~ 1315 (2058)
++.+...+-..||.. .+..+.+.|.. . ..+.||..++-.+|-.+ +...+ +++.+.+-..|...+..
T Consensus 399 alyAlGLIhA~hG~~----~~~yL~~~Lk~-~----~~e~v~hG~cLGlGLa~--mGSa~---~eiYe~lKevLy~D~Av 464 (929)
T KOG2062|consen 399 ALYALGLIHANHGRG----ITDYLLQQLKT-A----ENEVVRHGACLGLGLAG--MGSAN---EEIYEKLKEVLYNDSAV 464 (929)
T ss_pred hhhhhhccccCcCcc----HHHHHHHHHHh-c----cchhhhhhhhhhccchh--ccccc---HHHHHHHHHHHhccchh
Confidence 344433333444544 44444445444 1 12368999988777655 33333 56667776666554433
Q ss_pred HHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHH
Q 000143 1316 VQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKR 1395 (2058)
Q Consensus 1316 V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~ 1395 (2058)
.-+++.-.++-++ ++....+.+..++.--.+.....+.|+-+.+++.++-+.- .+.=+++.+.+.++ |+-.
T Consensus 465 sGEAAgi~MGl~m--lGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq------e~Ad~lI~el~~dk-dpil 535 (929)
T KOG2062|consen 465 SGEAAGIAMGLLM--LGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ------EDADPLIKELLRDK-DPIL 535 (929)
T ss_pred hhhHHHHhhhhHh--hCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh------hhhHHHHHHHhcCC-chhh
Confidence 3333333333322 2334566777777665554556777888888877765431 23345566677776 8999
Q ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhcc-CCChH
Q 000143 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWR 1473 (2058)
Q Consensus 1396 R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~-~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~-~~~~~ 1473 (2058)
|.+.+.+++.---+-|. .. ++..++. ..+|.+++||++|..+++.+.-.- +..+|..++.|. +-++.
T Consensus 536 R~~Gm~t~alAy~GTgn--nk----air~lLh~aVsD~nDDVrRaAVialGFVl~~d-----p~~~~s~V~lLses~N~H 604 (929)
T KOG2062|consen 536 RYGGMYTLALAYVGTGN--NK----AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD-----PEQLPSTVSLLSESYNPH 604 (929)
T ss_pred hhhhHHHHHHHHhccCc--hh----hHHHhhcccccccchHHHHHHHHHheeeEecC-----hhhchHHHHHHhhhcChh
Confidence 99988766543333332 22 3333333 478999999999999999775332 234566666666 45899
Q ss_pred HHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHhccCCCC
Q 000143 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDPN 1550 (2058)
Q Consensus 1474 ~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~~i~~lvp~Ll~~l~d~~ 1550 (2058)
+|.++..+||-.+.+.+.. ..+..|-.+..|+..-||+.|+-+++-+.-... +|.+..+-..+.+.+.|..
T Consensus 605 VRyGaA~ALGIaCAGtG~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKh 678 (929)
T KOG2062|consen 605 VRYGAAMALGIACAGTGLK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKH 678 (929)
T ss_pred hhhhHHHHHhhhhcCCCcH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhh
Confidence 9999999999877665432 344455566779999999999999988764433 3455566666666666654
Q ss_pred h
Q 000143 1551 D 1551 (2058)
Q Consensus 1551 ~ 1551 (2058)
+
T Consensus 679 E 679 (929)
T KOG2062|consen 679 E 679 (929)
T ss_pred h
Confidence 4
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.003 Score=76.90 Aligned_cols=459 Identities=15% Similarity=0.128 Sum_probs=238.1
Q ss_pred HHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCch-HHHHHHHH-HHhhcCCCCCCCHHhHH-H
Q 000143 1061 SALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEK-SVAEAAED-IWDRYGYDFGTDYSGLF-K 1137 (2058)
Q Consensus 1061 ~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~-~~r~~a~~-~w~~~~~~~~~~~~~ll-~ 1137 (2058)
.+++..++.|...|.++--++.++..... +. +....-+..-...+.+ .++-.|-. +..-.+.+....+..++ +
T Consensus 69 ~i~KlFQhkd~~Lrq~VY~aIkelS~~te-dv---lm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~ 144 (898)
T COG5240 69 AILKLFQHKDLYLRQCVYSAIKELSKLTE-DV---LMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQ 144 (898)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcch-hh---hHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhh
Confidence 45677889999999999888887752211 11 1111111111111111 22222211 11222222223444444 5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCC---CCCCCchhhHHHHHHHHHhhhhhCCCCh-
Q 000143 1138 ALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGD---NVDAGWLGRQGIALALHSAADVLRTKDL- 1213 (2058)
Q Consensus 1138 ~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~---~~~~~~~~R~~~~~al~~l~~~~~~~~~- 1213 (2058)
++-++...+|.+|.-.--++.-...+..........+....-...+-. ..-.+...-..--.++|-+.+.-..+..
T Consensus 145 a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma 224 (898)
T COG5240 145 AFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKMA 224 (898)
T ss_pred hccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHHH
Confidence 777888888777654333333221122233333333332211111100 0001111122333455555443322211
Q ss_pred -HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHh-Hh
Q 000143 1214 -PVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK-HL 1291 (2058)
Q Consensus 1214 -~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~-~l 1291 (2058)
..+++.+.. -..-.|..-....+++....+... .+.+.++-|++..++.++ .+.|.-.+...+.+++. +.
T Consensus 225 ~lklv~hf~~-n~smknq~a~V~lvr~~~~ll~~n-~q~~~q~rpfL~~wls~k------~emV~lE~Ar~v~~~~~~nv 296 (898)
T COG5240 225 QLKLVEHFRG-NASMKNQLAGVLLVRATVELLKEN-SQALLQLRPFLNSWLSDK------FEMVFLEAARAVCALSEENV 296 (898)
T ss_pred HHHHHHHhhc-ccccccchhheehHHHHHHHHHhC-hHHHHHHHHHHHHHhcCc------chhhhHHHHHHHHHHHHhcc
Confidence 112222210 011111111112233344444432 244567778888887762 23566666777777764 33
Q ss_pred ccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1292 AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKG 1368 (2058)
Q Consensus 1292 ~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~---~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~ 1368 (2058)
.++. +.+.+..|-..|+.+....|-++...+..+.-..++.. ..-++. |..+ ..|.-+.+++..+++.
T Consensus 297 ~~~~--~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEs----LIsd---~Nr~IstyAITtLLKT 367 (898)
T COG5240 297 GSQF--VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVES----LISD---ENRTISTYAITTLLKT 367 (898)
T ss_pred CHHH--HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHH----Hhhc---ccccchHHHHHHHHHc
Confidence 3333 66777777778888877777777777777765433221 112222 2222 2466788899999886
Q ss_pred hCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Q 000143 1369 FGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQVVAVREAAECAARAM 1447 (2058)
Q Consensus 1369 ~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~-D~~~~VR~aA~~al~~l 1447 (2058)
-..+.+. .++..+...+.|- +..-+.-++.++..++-.+++.-..|+ ..+...+. ...-....++.+++..+
T Consensus 368 Gt~e~id--rLv~~I~sfvhD~-SD~FKiI~ida~rsLsl~Fp~k~~s~l----~FL~~~L~~eGg~eFK~~~Vdaisd~ 440 (898)
T COG5240 368 GTEETID--RLVNLIPSFVHDM-SDGFKIIAIDALRSLSLLFPSKKLSYL----DFLGSSLLQEGGLEFKKYMVDAISDA 440 (898)
T ss_pred CchhhHH--HHHHHHHHHHHhh-ccCceEEeHHHHHHHHhhCcHHHHHHH----HHHHHHHHhcccchHHHHHHHHHHHH
Confidence 5444443 4566666555543 222334566777777776654334444 33333333 33456788888888888
Q ss_pred HHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhh--HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1448 MSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ--LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2058)
Q Consensus 1448 ~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~--l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2058)
++..+. .-...+..|...++|-++. +-++..||-+.+..|.. -..|...|...++ =.+..||.+|..||..
T Consensus 441 ~~~~p~-skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i----LEN~ivRsaAv~aLsk 513 (898)
T COG5240 441 MENDPD-SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVRHIYNRLI----LENNIVRSAAVQALSK 513 (898)
T ss_pred HhhCch-HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHHHHHHHHH----HhhhHHHHHHHHHHHH
Confidence 776543 2355667777777765543 23566777777766653 3334444444432 2367899999999999
Q ss_pred HHhhcCchhH-HhHHHHHHhccCCCChhHH
Q 000143 1526 VGSVIKNPEI-ASLVPTLLMGLTDPNDHTK 1554 (2058)
Q Consensus 1526 l~~~~~~~~i-~~lvp~Ll~~l~d~~~~vr 1554 (2058)
|+-...++.. +.+...+..+++|.++.+|
T Consensus 514 f~ln~~d~~~~~sv~~~lkRclnD~DdeVR 543 (898)
T COG5240 514 FALNISDVVSPQSVENALKRCLNDQDDEVR 543 (898)
T ss_pred hccCccccccHHHHHHHHHHHhhcccHHHH
Confidence 9987777655 3444455556677776666
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.042 Score=69.70 Aligned_cols=442 Identities=15% Similarity=0.237 Sum_probs=226.7
Q ss_pred HHHHHHHHHHHHHhHhc----cCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc-ccc-hHHHHHHHHHH--Hh
Q 000143 1276 VREGVVIFTGALAKHLA----KDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDE-APTLVSRLLDQ--LM 1347 (2058)
Q Consensus 1276 vR~~av~~Lg~La~~l~----~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~-~~~-~~~~v~~Ll~~--L~ 1347 (2058)
+-..+++++|+...-++ ..+++ ++.|.+.+. .+++|.+++.|+..++..- ++. --.++..+-+. +.
T Consensus 209 l~~~cLdc~g~fVSWIdInLIaNd~f----~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lf 282 (980)
T KOG2021|consen 209 LINSCLDCIGSFVSWIDINLIANDYF----LNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELF 282 (980)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhchhH----HHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 44566777777765433 23333 344455554 6889999999998888643 222 12233322111 11
Q ss_pred --cCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Q 000143 1348 --KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLL 1425 (2058)
Q Consensus 1348 --~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~L 1425 (2058)
.+.+..+-..--..++.++.+.|.+.+. +... +.++.+....+.++..+ -.++|.+
T Consensus 283 g~~s~dq~~d~df~e~vskLitg~gvel~~---i~s~----lnseld~~~kqn~l~~l---------------l~~vpyl 340 (980)
T KOG2021|consen 283 GYHSADQMDDLDFWESVSKLITGFGVELTI---IISQ----LNSELDTLYKQNVLSIL---------------LEIVPYL 340 (980)
T ss_pred hhhccccccCchHHHHHHHHHhhcceeeeh---hHhh----hhhccCHHHHHHHHHHH---------------HHHHHHH
Confidence 1111111112223455667777765542 1111 11223455555443322 2356666
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHH---Hhh---hhh---hHHhHHHHHHHhcc-------CCC----------hHHHHHHH
Q 000143 1426 LVAFSDQVVAVREAAECAARAMM---SQL---SAQ---GVKLVLPSLLKGLE-------DKA----------WRTKQSSV 1479 (2058)
Q Consensus 1426 l~~l~D~~~~VR~aA~~al~~l~---~~l---~~~---~v~~llp~Ll~~L~-------~~~----------~~~R~~a~ 1479 (2058)
+..+.|+.++.......-+.... +.+ +.. .+..++..+...+. +++ ...|+---
T Consensus 341 lq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk 420 (980)
T KOG2021|consen 341 LQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLK 420 (980)
T ss_pred HHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHH
Confidence 66666655544333322111111 111 111 12334444333221 111 12344444
Q ss_pred HHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH-------------HhHHHHHHhc-
Q 000143 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-------------ASLVPTLLMG- 1545 (2058)
Q Consensus 1480 ~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-------------~~lvp~Ll~~- 1545 (2058)
..+..+..-+|+-+...+..-+..-.......++..-+.|+.-+-.+++.+++++. ..+++.++..
T Consensus 421 ~fqdti~~idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsq 500 (980)
T KOG2021|consen 421 NFQDTIVVIDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQ 500 (980)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcc
Confidence 45555555566555444444443333334455677788999999999998876542 2344444432
Q ss_pred -cCCCChhHH-HHHHHHHh-ccccccCChhhHhhHHHHHH--HhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhh
Q 000143 1546 -LTDPNDHTK-YSLDILLQ-TTFVNTVDAPSLALLVPIVH--RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLL 1620 (2058)
Q Consensus 1546 -l~d~~~~vr-~al~~L~~-~~f~~~~~~~~l~~llp~L~--~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~l 1620 (2058)
...+++.++ .-++.+.+ ..|..+ .......++..+. +++...+..||..|......+.+.+. +.+.||.+.+
T Consensus 501 v~~h~h~lVqLlfmE~ivRY~kff~~-esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk--kqlvpfie~i 577 (980)
T KOG2021|consen 501 VLAHDHELVQLLFMELIVRYNKFFST-ESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK--KQLVPFIEEI 577 (980)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhc-chhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 233444333 22223332 112211 1112222333222 46677788999999988888887653 4678888888
Q ss_pred hHHHHHhhCCCCHHH------------HHHHHHHHHHHHHh--hccc----Ccc---------chHHHHHhhcccCCChH
Q 000143 1621 LPEVKKVLVDPIPEV------------RSVAARAIGSLIRG--MGEE----NFP---------DLVSWLLDALKSDNSNV 1673 (2058)
Q Consensus 1621 l~~L~~~l~d~~~~v------------R~~a~~aLg~l~~~--lg~~----~~~---------~llp~L~~~L~~d~~~~ 1673 (2058)
+..+..++..+.+.. .-...+++|.+... ...+ |.. ..+-.+...|.+|.+..
T Consensus 578 ln~iqdlL~~~vtt~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~p 657 (980)
T KOG2021|consen 578 LNKIQDLLHIKVTTINAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASP 657 (980)
T ss_pred HHHHHHHHcCcCCCcCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhcccccc
Confidence 888887774222211 11223344433311 0000 211 12222222333443321
Q ss_pred ----HHhhHHHHHHHHHHHhch-----------hHHHHhhHHHHHhhcc--CChhHHHHHHHHHHHhHHHhchhHHHhHH
Q 000143 1674 ----ERSGAAQGLSEVLAALGT-----------VYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQ 1736 (2058)
Q Consensus 1674 ----~R~~aa~~L~~i~~~~g~-----------~~l~~llp~Ll~~l~~--~~~~vR~~al~~l~~la~~~g~~f~pyl~ 1736 (2058)
.-..++.++|.+++++.. ..+...+..++..+.. ....+|.++-..++.+..++|++.-||++
T Consensus 658 v~Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfip 737 (980)
T KOG2021|consen 658 VVIAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIP 737 (980)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchH
Confidence 223577888888776532 1455555555544443 35678888889999999999999999999
Q ss_pred HHHHHHHHhccC
Q 000143 1737 QVLPAILDGLAD 1748 (2058)
Q Consensus 1737 ~ilp~Ll~~L~d 1748 (2058)
+.+..+++...-
T Consensus 738 klie~lL~s~d~ 749 (980)
T KOG2021|consen 738 KLIELLLSSTDL 749 (980)
T ss_pred HHHHHHHhcCCH
Confidence 999999986543
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.3e-06 Score=81.38 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch---hHHhHHHHHHhccCCCC
Q 000143 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPN 1550 (2058)
Q Consensus 1474 ~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~lvp~Ll~~l~d~~ 1550 (2058)
.|++++..|.+++...++.+.+|++.|+|.++.++.|++++||..||++|..++++.++. ++.++.+.|.+.+.|++
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 588999999999999999999999999999999999999999999999999999988763 56888999999999999
Q ss_pred hhHHHHHHHH
Q 000143 1551 DHTKYSLDIL 1560 (2058)
Q Consensus 1551 ~~vr~al~~L 1560 (2058)
+.||.+.+.|
T Consensus 82 ~~Vr~~a~~L 91 (97)
T PF12755_consen 82 ENVRSAAELL 91 (97)
T ss_pred hhHHHHHHHH
Confidence 8888654443
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.7e-05 Score=93.12 Aligned_cols=240 Identities=18% Similarity=0.126 Sum_probs=160.7
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~ 1457 (2058)
..++.+...+..+.+..++..+..++.... .+ ..+..++..+.|.++.||..+.++|+.+- -.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~-------~~---~~~~~L~~~L~d~~~~vr~aaa~ALg~i~-------~~ 116 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQE-------DA---LDLRSVLAVLQAGPEGLCAGIQAALGWLG-------GR 116 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccC-------Ch---HHHHHHHHHhcCCCHHHHHHHHHHHhcCC-------ch
Confidence 345666677754446777766655442111 11 13677888999999999999999998652 23
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHh
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2058)
...+.|...+.+.++.+|..++.+++..-. .-.+.+...++|.++.||.+|+.+|+.+... .
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-------~ 178 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR-------L 178 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-------c
Confidence 556778888899999999998888876321 2245667788899999999999999998752 3
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh
Q 000143 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2058)
Q Consensus 1538 lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py 1616 (2058)
.+|.|...+.|+++.+| .|+..++...- ..-.+.+.....+....++..+..++... ++
T Consensus 179 a~~~L~~al~d~~~~VR~aA~~al~~lG~---------~~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~------- 238 (410)
T TIGR02270 179 SESTLRLYLRDSDPEVRFAALEAGLLAGS---------RLAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG------- 238 (410)
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHhccCccHHHHHHHHHHhC----Cc-------
Confidence 55667778999999998 56666654110 11223333333444444444443344322 22
Q ss_pred HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHH
Q 000143 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i 1685 (2058)
+..++.|..+++|+. +|..++.++|.+.. +..++.|++.+.++. .+..+..++..|
T Consensus 239 -~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~-------p~av~~L~~~l~d~~---~aR~A~eA~~~I 294 (410)
T TIGR02270 239 -PDAQAWLRELLQAAA--TRREALRAVGLVGD-------VEAAPWCLEAMREPP---WARLAGEAFSLI 294 (410)
T ss_pred -hhHHHHHHHHhcChh--hHHHHHHHHHHcCC-------cchHHHHHHHhcCcH---HHHHHHHHHHHh
Confidence 246777888888865 89999999987753 578888988887433 566677766654
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.05 Score=69.01 Aligned_cols=341 Identities=15% Similarity=0.142 Sum_probs=207.6
Q ss_pred HHHHHHHHHHhhhCccccchhchHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHhc--ccchhhHHH-HHHHHH
Q 000143 1357 GAAFGLAGVVKGFGISSLKKYGIAATLREGLA-------DRNSAKRREGALLAFECLCEKLG--RLFEPYVIQ-MLPLLL 1426 (2058)
Q Consensus 1357 ~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~-------~~~~~~~R~~al~al~~L~~~lg--~~~~p~l~~-llp~Ll 1426 (2058)
+|+.++-.+....+...+. ++++++...+. +-+++...++|+..+..+..-+. ..+...... +++.++
T Consensus 389 aal~fl~~~~sKrke~Tfq--giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~ 466 (970)
T COG5656 389 AALFFLIISKSKRKEETFQ--GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVI 466 (970)
T ss_pred HHHHHHHHHhcccchhhhh--hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhh
Confidence 4555555555555544443 78888887772 22467888999999988887332 233333333 678888
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhC--hhhHhhhhhhHHHH
Q 000143 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA--PQQLSQCLPKIVPK 1503 (2058)
Q Consensus 1427 ~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~--p~~l~~~L~~Iip~ 1503 (2058)
..+.++.-..|..|++.+..+...++..++ ..+.....+.+.+.+-.++..|..++..+..+. ...++.|.|..+..
T Consensus 467 P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmek 546 (970)
T COG5656 467 PAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEK 546 (970)
T ss_pred HhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHH
Confidence 899999999999999999998777777665 667777788888888889999999999888653 34578899999999
Q ss_pred HHHHhcCCCHHHHHHHHHH-HHHHHhhcCc--hhH-HhHHH----HHHhccCCCC---hhHH----HHHHHHHh-ccccc
Q 000143 1504 LTEVLTDTHPKVQSAGQTA-LQQVGSVIKN--PEI-ASLVP----TLLMGLTDPN---DHTK----YSLDILLQ-TTFVN 1567 (2058)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~a-L~~l~~~~~~--~~i-~~lvp----~Ll~~l~d~~---~~vr----~al~~L~~-~~f~~ 1567 (2058)
++.+-++-+..+-..+.+. .++|++.+.+ +++ ..++. .....+.+++ ..+. .|...|.. ++.+-
T Consensus 547 LLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiL 626 (970)
T COG5656 547 LLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMIL 626 (970)
T ss_pred HHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHH
Confidence 9988887666555544443 2444444331 121 23333 2233333331 1111 12221111 11111
Q ss_pred cCC-hh-----hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCH-HHHHHHH
Q 000143 1568 TVD-AP-----SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP-EVRSVAA 1640 (2058)
Q Consensus 1568 ~~~-~~-----~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~-~vR~~a~ 1640 (2058)
..+ .| ....+.|.+.-.+++.-.+.-++|++++....-.. +++.|....+.+.+.+++.++.. .--+.++
T Consensus 627 Slen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~s---keI~pimwgi~Ell~~~l~~~~t~~y~ee~~ 703 (970)
T COG5656 627 SLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMS---KEIEPIMWGIFELLLNLLIDEITAVYSEEVA 703 (970)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHH---HHhhhhhhHHHHHHHhcccccchhhhHHHHH
Confidence 111 11 22335566666666666678888898887655432 34556666777777777777764 4455667
Q ss_pred HHHHHHHHhhccc------CccchHHHHHhhcccCCC-hHHHhhHHHHHHHHHHHhchhHHHHhhHHHH
Q 000143 1641 RAIGSLIRGMGEE------NFPDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILPDII 1702 (2058)
Q Consensus 1641 ~aLg~l~~~lg~~------~~~~llp~L~~~L~~d~~-~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll 1702 (2058)
-++..+..--|.+ |..-+.......+.++.+ -.++.++++-+-.++-..+.+.+++.+|.+.
T Consensus 704 ~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~plfi 772 (970)
T COG5656 704 DALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLPLFI 772 (970)
T ss_pred HHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhHHHH
Confidence 7777777543333 233355555555655433 2466667766666666666655555555443
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00024 Score=88.67 Aligned_cols=274 Identities=24% Similarity=0.250 Sum_probs=170.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
..++.+...+.|++..+|..+...++.+ +....+|.+...+.+.++.+|..++.+||.+.. +.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~-------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~ 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL-------GSEEAVPLLRELLSDEDPRVRDAAADALGELGD----------PE 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh-------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hh
Confidence 4566777889999999999998886554 345788999999999999999999998887643 35
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCC------------hhHH-HHHHHHHhccc
Q 000143 1500 IVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN------------DHTK-YSLDILLQTTF 1565 (2058)
Q Consensus 1500 Iip~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~------------~~vr-~al~~L~~~~f 1565 (2058)
.++.+.+.+. |.+..||..|..+|+.+...- -++.++..+.|+. ..+| .++..++...
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~- 177 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLGDER-------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG- 177 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC-
Confidence 5666777777 799999999999999987632 2444555555543 1234 3444444210
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHH
Q 000143 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645 (2058)
Q Consensus 1566 ~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~ 1645 (2058)
.....+.+...+.+....+|..|...++.+.... ..+.+.+...+.|+++.+|..++.++|.
T Consensus 178 --------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr~~~~~~l~~ 239 (335)
T COG1413 178 --------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVRKAALLALGE 239 (335)
T ss_pred --------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHHHHHHHHhcc
Confidence 1124566677777777788888887777665421 2356777777888888888888777776
Q ss_pred HHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHH
Q 000143 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2058)
Q Consensus 1646 l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~ 1725 (2058)
+. ..+..+.+...+..+ ++..+......++ ........+.+...+.+.+..+|......++.+..
T Consensus 240 ~~-------~~~~~~~l~~~l~~~-~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 304 (335)
T COG1413 240 IG-------DEEAVDALAKALEDE-DVILALLAAAALG-------ALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQ 304 (335)
T ss_pred cC-------cchhHHHHHHHHhcc-chHHHHHHHHHhc-------ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcc
Confidence 54 234455565666533 3334444333332 11111223334444555666666666555554433
Q ss_pred HhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHH
Q 000143 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAG 1761 (2058)
Q Consensus 1726 ~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al 1761 (2058)
.. .....+....+....+|..+....
T Consensus 305 ~~----------~~~a~~~~~~~~~~~~~~~~~~~~ 330 (335)
T COG1413 305 EK----------AVAALLLALEDGDADVRKAALILL 330 (335)
T ss_pred cc----------hHHHHHHHhcCCchhhHHHHHHHH
Confidence 22 122333444555555665554443
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00027 Score=88.23 Aligned_cols=274 Identities=25% Similarity=0.254 Sum_probs=183.3
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~ 1457 (2058)
...+.+.+.+.++ ++.+|..+...++.+. ....+|.+...+.|.++.||..|..+++.+. .+
T Consensus 43 ~~~~~~~~~l~~~-~~~vr~~aa~~l~~~~----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~-------~~ 104 (335)
T COG1413 43 EAADELLKLLEDE-DLLVRLSAAVALGELG----------SEEAVPLLRELLSDEDPRVRDAAADALGELG-------DP 104 (335)
T ss_pred hhHHHHHHHHcCC-CHHHHHHHHHHHhhhc----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC-------Ch
Confidence 3466677777777 8889998877654433 2367899999999999999999999777652 24
Q ss_pred hHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCC------------HHHHHHHHHHHH
Q 000143 1458 LVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTH------------PKVQSAGQTALQ 1524 (2058)
Q Consensus 1458 ~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~------------~~VR~aA~~aL~ 1524 (2058)
..+|.+...+. +.++.+|..+..+|+.+... ..+..++..++|.. ..+|.++..+++
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~ 174 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALG 174 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHH
Confidence 56777777777 79999999999999987542 22445556666644 268998998888
Q ss_pred HHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000143 1525 QVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2058)
Q Consensus 1525 ~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L 1603 (2058)
.++. ....+.+...+.++...+| .+..+++.+.... ..+.+.+...+.+.++.+|..++..++.+
T Consensus 175 ~~~~-------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~ 240 (335)
T COG1413 175 ELGD-------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-------VEAADLLVKALSDESLEVRKAALLALGEI 240 (335)
T ss_pred HcCC-------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-------hhHHHHHHHHhcCCCHHHHHHHHHHhccc
Confidence 8875 3456677778888888887 5666776532211 24667888899999999999988877764
Q ss_pred HhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHH
Q 000143 1604 CSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2058)
Q Consensus 1604 ~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~ 1683 (2058)
.. ....+.+...+.+.++.++..+..+.+ +. ......+.+...+. +....+|..++..++
T Consensus 241 ~~------------~~~~~~l~~~l~~~~~~~~~~~~~~~~------~~-~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~ 300 (335)
T COG1413 241 GD------------EEAVDALAKALEDEDVILALLAAAALG------AL-DLAEAALPLLLLLI-DEANAVRLEAALALG 300 (335)
T ss_pred Cc------------chhHHHHHHHHhccchHHHHHHHHHhc------cc-CchhhHHHHHHHhh-cchhhHHHHHHHHHH
Confidence 32 124566667777888888877776666 11 11222333444444 444557777777766
Q ss_pred HHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHH
Q 000143 1684 EVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLF 1720 (2058)
Q Consensus 1684 ~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l 1720 (2058)
.+..... ....+....+.+..+|.......
T Consensus 301 ~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~ 330 (335)
T COG1413 301 QIGQEKA-------VAALLLALEDGDADVRKAALILL 330 (335)
T ss_pred hhcccch-------HHHHHHHhcCCchhhHHHHHHHH
Confidence 5543322 12233334445556665554443
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.11 Score=69.88 Aligned_cols=160 Identities=13% Similarity=0.246 Sum_probs=118.4
Q ss_pred hHHHHhhHHHHHhhccC----ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Q 000143 1692 VYFEHILPDIIRNCSHQ----RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1692 ~~l~~llp~Ll~~l~~~----~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~-d~~~~VR~~a~~al~~lv~ 1766 (2058)
..+..+.|.+...++++ +|.++.++.-+++.+...- . .|.+.-+|.++..+. .+++-||.++.-+++.+.-
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-a---~fces~l~llftimeksp~p~IRsN~VvalgDlav 990 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-A---EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAV 990 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-H---HHHHHHHHHHHHHHhcCCCceeeecchheccchhh
Confidence 35577888888888664 7899999988888775432 2 366777888888887 7889999999999988876
Q ss_pred HhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHH
Q 000143 1767 HYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVL 1846 (2058)
Q Consensus 1767 ~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL 1846 (2058)
.|. ..++..-+.+.+.+.|++..+|..|+-.+..|+-+ .++++=| .+
T Consensus 991 ~fp-nlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--------------------------dmiKVKG------ql 1037 (1251)
T KOG0414|consen 991 RFP-NLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--------------------------DMIKVKG------QL 1037 (1251)
T ss_pred hcc-cccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--------------------------hhhHhcc------cH
Confidence 663 34666778888889999999999999999888521 1122222 24
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 000143 1847 AALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1889 (2058)
Q Consensus 1847 ~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~ 1889 (2058)
+.+..|+.|++..+|..|-..++.+.+. +.++-..+|.++..
T Consensus 1038 ~eMA~cl~D~~~~IsdlAk~FF~Els~k-~n~iynlLPdil~~ 1079 (1251)
T KOG0414|consen 1038 SEMALCLEDPNAEISDLAKSFFKELSSK-GNTIYNLLPDILSR 1079 (1251)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhhc-ccchhhhchHHHHh
Confidence 4556678899999999998899888763 35666666666554
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00015 Score=86.97 Aligned_cols=194 Identities=20% Similarity=0.163 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccch--hchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412 (2058)
Q Consensus 1335 ~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~--~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~ 1412 (2058)
...++..++..+..++....|.+|..-|-.+...-+...+.+ ..++..+.+.+.+.++...|..|+..++.+++.-..
T Consensus 284 ~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 284 QSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred hhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 356778888888777777788888887777665433333332 257777788888866889999999999999998888
Q ss_pred cchhhHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh-
Q 000143 1413 LFEPYVIQMLPLLLVAFSDQVVAV-REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP- 1490 (2058)
Q Consensus 1413 ~~~p~l~~llp~Ll~~l~D~~~~V-R~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p- 1490 (2058)
.|..+....+..++..-.|.++.| |.++.+|+..+....+-..+..+-|.++. .+...-.+++..+..+.+..+
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~ 439 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSA 439 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCH
Confidence 888898888889999999987655 66667777777777776777777777765 445555567777888887765
Q ss_pred hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1491 ~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
+.+...++++.|.+++..+.....||+.|..||-.+...++.
T Consensus 440 EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~ 481 (516)
T KOG2956|consen 440 EELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM 481 (516)
T ss_pred HHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH
Confidence 458889999999999999999999999999999999888773
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0018 Score=80.44 Aligned_cols=285 Identities=18% Similarity=0.146 Sum_probs=172.3
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch---------
Q 000143 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--------- 1533 (2058)
Q Consensus 1463 Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~--------- 1533 (2058)
+.....+.+.++|..|++.+-.+.++. ++. ..+.....+.+.|.+..||.+|.+.+.-.+....-|
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~--kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF--KLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc--ccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 555667889999999999888777632 222 245566778899999999999999998888876311
Q ss_pred hHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHh-hc-CCCHHHHHHHHHHHHHHHhh----
Q 000143 1534 EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRG-LR-ERSAETKKKAAQIVGNMCSL---- 1606 (2058)
Q Consensus 1534 ~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~-L~-d~s~~vr~~A~~~l~~L~~~---- 1606 (2058)
........+...+.|-+..+| +|...+|...- -+-..|...|.+. +. ++-|....+..+.+-.=++.
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~------vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ------VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHH------hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 235667777888888888887 67777764111 1111122222221 11 12222222222222111100
Q ss_pred -hCC--C-Cc-----hhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhh
Q 000143 1607 -VTE--P-KD-----MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1607 -l~~--~-~~-----l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
.++ | +. ..-.-......+...+.|.-.+||.+|..+++.++..- +.+-...+..|++.++ |+-.++|..
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~FA~~aldfLvDMfN-DE~~~VRL~ 429 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-PGFAVRALDFLVDMFN-DEIEVVRLK 429 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhc-cHHHHHHHH
Confidence 000 0 00 00000122345666677888999999999999998543 3344567777888776 666679999
Q ss_pred HHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHH
Q 000143 1678 AAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAA 1757 (2058)
Q Consensus 1678 aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a 1757 (2058)
+..+|..++..+... ++.++.++..+.|.+..+|++.-.+++..--.-- ..+...+..+++.|.. .|.=|+..
T Consensus 430 ai~aL~~Is~~l~i~--eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~----~~i~m~v~~lL~~L~k-yPqDrd~i 502 (823)
T KOG2259|consen 430 AIFALTMISVHLAIR--EEQLRQILESLEDRSVDVREALRELLKNARVSDL----ECIDMCVAHLLKNLGK-YPQDRDEI 502 (823)
T ss_pred HHHHHHHHHHHheec--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHhhh-CCCCcHHH
Confidence 999999888764322 6788888999999999999998877764321111 2334444555555532 12224455
Q ss_pred HHHHHHHHHH
Q 000143 1758 LGAGHVLVEH 1767 (2058)
Q Consensus 1758 ~~al~~lv~~ 1767 (2058)
..++..|.++
T Consensus 503 ~~cm~~iGqn 512 (823)
T KOG2259|consen 503 LRCMGRIGQN 512 (823)
T ss_pred HHHHHHHhcc
Confidence 6666666544
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.11 E-value=9.1e-05 Score=98.13 Aligned_cols=340 Identities=17% Similarity=0.225 Sum_probs=218.1
Q ss_pred hhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC-c-cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHh
Q 000143 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-F-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2058)
Q Consensus 1620 ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~-~-~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2058)
.+..+...+.-..+..-..++.++..++...|... . ..++| .+..+. +..+|..+...+.++.+..|......+
T Consensus 99 ~~e~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~-~~~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~ 174 (815)
T KOG1820|consen 99 VVEAAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIK-HVGSLA---DKNVRSEASKLLVEIYRWTGDASKPLL 174 (815)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccc-cCcccc---ccccchhhcccchhhhhhcCCCcCccc
Confidence 34455555555666667778888888888777542 1 12222 223333 344789999999999888887522111
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCC-HHHHHH--HHHHH-HHHHHHh-----
Q 000143 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN-ESVRDA--ALGAG-HVLVEHY----- 1768 (2058)
Q Consensus 1698 lp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~-~~VR~~--a~~al-~~lv~~~----- 1768 (2058)
.+......++.+..+.|.....+...--|.......++. +++.+. ..... +.-....
T Consensus 175 --------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d 240 (815)
T KOG1820|consen 175 --------------FKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPID 240 (815)
T ss_pred --------------chhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCcc
Confidence 144444555555555554322222222222223332221 111110 00000 0000000
Q ss_pred ------cccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhH
Q 000143 1769 ------ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2058)
Q Consensus 1769 ------~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~ 1842 (2058)
..+..+.+-|.+...+.+++|.-|..+++-+...+....+. . ...+
T Consensus 241 ~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~----------~------------------~~~~ 292 (815)
T KOG1820|consen 241 NFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKE----------I------------------VKGY 292 (815)
T ss_pred ccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccc----------c------------------ccCc
Confidence 01233456677888889999999999999888876321100 0 0001
Q ss_pred HHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchh
Q 000143 1843 NEVLAA-LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVL 1921 (2058)
Q Consensus 1843 ~~vL~~-L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l 1921 (2058)
...+.. +-....|.+-.|-..|..++..++...+..+..+...+++.++..+.+....+|..+..++-.++. ...+
T Consensus 293 ~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~~l 369 (815)
T KOG1820|consen 293 TGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN---STPL 369 (815)
T ss_pred chHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh---cccH
Confidence 111111 222357888888888999999999888888899999999999999999999999988888887776 3346
Q ss_pred hchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhh-hHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhh
Q 000143 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ-LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA 2000 (2058)
Q Consensus 1922 ~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~-l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~ 2000 (2058)
..+.+.+..++.+.+|..|......+...+...++.. ...-...++|.+....+|.+.+||.+|..+++.+.+..|...
T Consensus 370 ~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~ 449 (815)
T KOG1820|consen 370 SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEV 449 (815)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHH
Confidence 7888889999999999999998888888888877322 223448899999999999999999999999999999998765
Q ss_pred HHHHHHHH
Q 000143 2001 IDEIVPTL 2008 (2058)
Q Consensus 2001 ~~~ilp~L 2008 (2058)
+..+|-.+
T Consensus 450 ~~k~L~~~ 457 (815)
T KOG1820|consen 450 FKKLLKDL 457 (815)
T ss_pred HHHHHHhh
Confidence 54444333
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00085 Score=79.93 Aligned_cols=496 Identities=18% Similarity=0.166 Sum_probs=261.1
Q ss_pred CHHHHHHHHHHHHHHHHHhcc-cchhhHHHHHH--------H-HHHHcCCCCHHHHHHHHHHHHHHHHh----------h
Q 000143 1392 SAKRREGALLAFECLCEKLGR-LFEPYVIQMLP--------L-LLVAFSDQVVAVREAAECAARAMMSQ----------L 1451 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~-~~~p~l~~llp--------~-Ll~~l~D~~~~VR~aA~~al~~l~~~----------l 1451 (2058)
..++|.+|+.+|..+...+.+ .|-.|...++| . ++-.++|+++..|..|.+.+.++..- +
T Consensus 9 ~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 9 QAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 467899999999988887763 45566544433 2 23468899999999998888777521 1
Q ss_pred hhh-----hH------HhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChh-hHh-hhhhhHHHHHHHHhcCCCHHHHH
Q 000143 1452 SAQ-----GV------KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQ-QLS-QCLPKIVPKLTEVLTDTHPKVQS 1517 (2058)
Q Consensus 1452 ~~~-----~v------~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~-~l~-~~L~~Iip~L~~~L~D~~~~VR~ 1517 (2058)
+++ .+ ...-.-++-.+. +....+-...+..|..+....|- ++. ..+-+++..+.+....+++.||-
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 111 11 111111222222 33344444566667777666663 222 24456777778888889999999
Q ss_pred HHHHHHHHHHhhcC-chhHHhHHHHHHh-------ccCCCChhHH----HHHHHHHhccccccCChhhH-----------
Q 000143 1518 AGQTALQQVGSVIK-NPEIASLVPTLLM-------GLTDPNDHTK----YSLDILLQTTFVNTVDAPSL----------- 1574 (2058)
Q Consensus 1518 aA~~aL~~l~~~~~-~~~i~~lvp~Ll~-------~l~d~~~~vr----~al~~L~~~~f~~~~~~~~l----------- 1574 (2058)
.+...++.+...-. -|+++..+..-.. .+..|+.+.. .+...+.. ......++-
T Consensus 169 s~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~---~~~~~~~~~~~~i~~~~~i~ 245 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSV---SSPKGSSEPCWLIRLCISIV 245 (728)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhcc---CCccCCCCCcceeeeeeeee
Confidence 99999998876533 2444322211000 0000111100 01111110 000000000
Q ss_pred ------hhHHHHHHHhhcC--CCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHH
Q 000143 1575 ------ALLVPIVHRGLRE--RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1575 ------~~llp~L~~~L~d--~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l 1646 (2058)
.-......+.+.. ....+|.++.+++..|+..++ ....|.-++...+-..+.++.+.+...+++++..+
T Consensus 246 ~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~---~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~l 322 (728)
T KOG4535|consen 246 VLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS---MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEEL 322 (728)
T ss_pred ecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHH
Confidence 0011112222221 123688999999988887543 23446556666666667899999999999999999
Q ss_pred HHhhcccCccc------hHHHHHhhccc--------CC-ChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhccC
Q 000143 1647 IRGMGEENFPD------LVSWLLDALKS--------DN-SNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ 1708 (2058)
Q Consensus 1647 ~~~lg~~~~~~------llp~L~~~L~~--------d~-~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~~~ 1708 (2058)
...++.++.|+ ....+...+-. |. ........+.++..+...--.. .-....+.++..+.|.
T Consensus 323 g~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~ 402 (728)
T KOG4535|consen 323 GTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDS 402 (728)
T ss_pred HHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccch
Confidence 99888654432 11111111110 00 0001223334444432211000 0124555666666643
Q ss_pred -ChhHHHHHHHHHHHhHHHhchh-HHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----------chhch
Q 000143 1709 -RASVRDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLPLL 1776 (2058)
Q Consensus 1709 -~~~vR~~al~~l~~la~~~g~~-f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----------~l~~l 1776 (2058)
+.-+|.+++..++.+....|.. -..+.......++..+.|..-++|..+..+++.|-...-.. ....+
T Consensus 403 ~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~l 482 (728)
T KOG4535|consen 403 KNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLL 482 (728)
T ss_pred HHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHH
Confidence 6677888887776655443331 12355566677777777777778888888887765443211 11111
Q ss_pred HHhHhhhc---CCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHH-HHh
Q 000143 1777 LPAVEDGI---FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL-YMV 1852 (2058)
Q Consensus 1777 lp~L~~~l---~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L-~~~ 1852 (2058)
+..+.... .-++++||..+++.+|.+++-+-..... .++ +..+.-...+ ...
T Consensus 483 l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~-----------------------~~~-e~~~~~~~~l~~~v 538 (728)
T KOG4535|consen 483 LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKP-----------------------TFA-EIIEESIQALISTV 538 (728)
T ss_pred HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhc-----------------------cHH-HHHHHHHHhcccce
Confidence 11111111 2246788888888888886322100000 000 0000111111 111
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhChh--hHHHhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhC
Q 000143 1853 RSDVSLSVRQAALHVWKTIVANTPK--TLKEIMPVLMNTLISSL-ASSSSERRQVAGRALGELVRKLG 1917 (2058)
Q Consensus 1853 ~~D~~~~VR~aA~~~l~~lv~~~~~--~l~~~l~~L~~~l~~~L-~~~~~~~R~~A~~~Lg~L~~~lg 1917 (2058)
.......||-.+..+++.++.|..- .-.+..+.+++.+...+ ...|..+|..|+.+|..-.+..|
T Consensus 539 ~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~ 606 (728)
T KOG4535|consen 539 LTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQ 606 (728)
T ss_pred ecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCccc
Confidence 2234456888888999999876321 11133344444443333 34689999999999876655544
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.11 Score=66.73 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=90.2
Q ss_pred HHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHH--------HHHhhcC-CCCC
Q 000143 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYG-YDFG 1129 (2058)
Q Consensus 1059 l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~--------~~w~~~~-~~~~ 1129 (2058)
+.+.|+...+||+.|++-|+++|++.... |.+-..+..++ ..++.|-.+|-+|. ..|+.+. ...+
T Consensus 2 vvq~Lq~Ats~d~~v~k~AE~qLr~WEtq-----PGF~~~L~sI~-l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~ 75 (978)
T KOG1993|consen 2 VVQVLQQATSQDHIVVKPAEAQLRQWETQ-----PGFFSKLYSIF-LSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLP 75 (978)
T ss_pred HHHHHHHhcCCCcccchhHHHHHHhhccC-----CcHHHHHHHHH-hccccceeeeeehhhhHhcchhHHhhcCCcccCC
Confidence 45678889999999999999999976511 23334445554 55666677777764 4788643 2333
Q ss_pred C----CH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHH
Q 000143 1130 T----DY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2058)
Q Consensus 1130 ~----~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~ 1203 (2058)
+ .+ ..++...+.+++.+-...|.+++.++.. +|..|++++..|.+.....+..+ | ...-+-+...+.+
T Consensus 76 ~EEK~~iR~~Ll~~~~E~~nQlaiQ~AvlisrIARlDyPreWP~Lf~~L~~~Lq~~~~~g-----D-~~~~~RiLi~l~~ 149 (978)
T KOG1993|consen 76 PEEKDFIRCNLLLHSDEENNQLAIQNAVLISRIARLDYPREWPDLFPDLLGQLQSSLGTG-----D-SLVQHRILITLHH 149 (978)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHhcccc-----h-HHHHHHHHHHHHH
Confidence 2 24 6788888888999999999999999974 46666666666666554433221 1 1233445555555
Q ss_pred hhhhh
Q 000143 1204 AADVL 1208 (2058)
Q Consensus 1204 l~~~~ 1208 (2058)
+...+
T Consensus 150 ilK~L 154 (978)
T KOG1993|consen 150 ILKAL 154 (978)
T ss_pred HHHHH
Confidence 44433
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.075 Score=71.21 Aligned_cols=230 Identities=20% Similarity=0.182 Sum_probs=147.8
Q ss_pred chHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch-HHHHHHHHHHHhc-------------CCCHHHHHHHHHHH
Q 000143 1297 KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMK-------------SDKYGERRGAAFGL 1362 (2058)
Q Consensus 1297 ~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~-~~~v~~Ll~~L~~-------------~~~~~vR~~Aa~~L 1362 (2058)
.+..++..|+.-+-+|.+++|..++-++..+....+... ...++.++-.+.. .--..+|.+.+++|
T Consensus 74 ~f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L 153 (1549)
T KOG0392|consen 74 PFLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQAL 153 (1549)
T ss_pred cHHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHH
Confidence 367788889999999999999877666666555433221 1223333222211 11247899999999
Q ss_pred HHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000143 1363 AGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442 (2058)
Q Consensus 1363 ~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~ 1442 (2058)
+.+.+...+.... ..++.+.+++... +|+.|++.+.++.+......+.+...+..+++.++..+.|.+..||..|..
T Consensus 154 ~~~l~~~~~s~~~--~~~~il~q~~~q~-~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~ 230 (1549)
T KOG0392|consen 154 GAYLKHMDESLIK--ETLDILLQMLRQP-NWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQ 230 (1549)
T ss_pred HHHHHhhhhHhhH--HHHHHHHHHHcCc-chhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 9999987655543 6677777777766 899999999988777664444455667788999999999999999999988
Q ss_pred HHHHHHHhhhh---hhHHhHHHHHHHhc---cCCChHHHHHHHHHHHHHHhhCh-hhH--hhhh-hhHHHHHHHHhcCCC
Q 000143 1443 AARAMMSQLSA---QGVKLVLPSLLKGL---EDKAWRTKQSSVQLLGAMAYCAP-QQL--SQCL-PKIVPKLTEVLTDTH 1512 (2058)
Q Consensus 1443 al~~l~~~l~~---~~v~~llp~Ll~~L---~~~~~~~R~~a~~~Lg~la~~~p-~~l--~~~L-~~Iip~L~~~L~D~~ 1512 (2058)
.+-.+...... ..+..++..++..+ .+-.|.+-. -...+..++-... .++ ...+ ..++|.+...+...-
T Consensus 231 ~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~s-i~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i 309 (1549)
T KOG0392|consen 231 FLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTAS-IMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI 309 (1549)
T ss_pred HhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHH-HHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence 88877766522 22334444444333 233333211 1111222211110 000 1111 367777777888777
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 000143 1513 PKVQSAGQTALQQVGSVI 1530 (2058)
Q Consensus 1513 ~~VR~aA~~aL~~l~~~~ 1530 (2058)
..||.+++..+..|.+.-
T Consensus 310 ~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 310 SSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 889999999999998753
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.031 Score=74.23 Aligned_cols=359 Identities=17% Similarity=0.173 Sum_probs=186.0
Q ss_pred HHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHH
Q 000143 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 1556 (2058)
Q Consensus 1477 ~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~a 1556 (2058)
.++.+|.++++...-.....-..+++.|+++|...+.++...+...|..++-.-.+...
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~--------------------- 326 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDE--------------------- 326 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHH---------------------
Confidence 56778888888766555445568999999999888888888888888888643222110
Q ss_pred HHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH--hhhhHHHHHhhCCCCHH
Q 000143 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVKKVLVDPIPE 1634 (2058)
Q Consensus 1557 l~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl--~~ll~~L~~~l~d~~~~ 1634 (2058)
+. -..++|.|.+.+...+.+.+..+..++.|++. + .+.++.+ ..++|.|..++.|++
T Consensus 327 ---m~------------~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf---d-~~~R~~mV~~GlIPkLv~LL~d~~-- 385 (708)
T PF05804_consen 327 ---MA------------ESGIVEKLLKLLPSENEDLVNVALRLLFNLSF---D-PELRSQMVSLGLIPKLVELLKDPN-- 385 (708)
T ss_pred ---HH------------HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc---C-HHHHHHHHHCCCcHHHHHHhCCCc--
Confidence 00 01244445555555555666666666666653 2 1222222 247888888888754
Q ss_pred HHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhc--hhHH-HHhhHHHHHhhccC
Q 000143 1635 VRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG--TVYF-EHILPDIIRNCSHQ 1708 (2058)
Q Consensus 1635 vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g--~~~l-~~llp~Ll~~l~~~ 1708 (2058)
.|..+...|..++..-... ...+++|.+++.+...++..+....+..+-.++..-. ...+ ...++.++......
T Consensus 386 ~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~ 465 (708)
T PF05804_consen 386 FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKT 465 (708)
T ss_pred hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhc
Confidence 4555666665555311111 2346889888877654433232222111111110000 0000 12233344333222
Q ss_pred ChhHHHHHHHHHHHhHHHhch---hHHHhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhccc-----chh--chH
Q 000143 1709 RASVRDGYLTLFKYLPRSLGV---QFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYATT-----SLP--LLL 1777 (2058)
Q Consensus 1709 ~~~vR~~al~~l~~la~~~g~---~f~pyl~~ilp~Ll~~L~d~-~~~VR~~a~~al~~lv~~~~~~-----~l~--~ll 1777 (2058)
.. .-.+.++.+++..-|. .|.+|+.. +...+..+ ++ +...++++.+.+..-+. .+. .++
T Consensus 466 ~D---~lLlKlIRNiS~h~~~~k~~f~~~i~~----L~~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~ll 535 (708)
T PF05804_consen 466 RD---PLLLKLIRNISQHDGPLKELFVDFIGD----LAKIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLL 535 (708)
T ss_pred cc---HHHHHHHHHHHhcCchHHHHHHHHHHH----HHHHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHH
Confidence 11 2245677777766543 34445444 33444433 33 34555555544322111 111 377
Q ss_pred HhHhhhcCCC--CHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcC
Q 000143 1778 PAVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855 (2058)
Q Consensus 1778 p~L~~~l~d~--~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D 1855 (2058)
|.+.+.+... ...+...++-++|.+... + ..+..+.....-..+-.++...++
T Consensus 536 p~L~~~L~~g~~~dDl~LE~Vi~~gtla~d---------------~----------~~A~lL~~sgli~~Li~LL~~kqe 590 (708)
T PF05804_consen 536 PWLKDLLKPGASEDDLLLEVVILLGTLASD---------------P----------ECAPLLAKSGLIPTLIELLNAKQE 590 (708)
T ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHHCC---------------H----------HHHHHHHhCChHHHHHHHHHhhCc
Confidence 7777777432 346777777777776310 0 001111111122233344445555
Q ss_pred CCHHHHHHHHHHHHHHHhhChhhHHHhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1856 VSLSVRQAALHVWKTIVANTPKTLKEIM--PVLMNTLISSLASSSSERRQVAGRALGELVR 1914 (2058)
Q Consensus 1856 ~~~~VR~aA~~~l~~lv~~~~~~l~~~l--~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~ 1914 (2058)
.++.|-|... ++..+..+ +.+...++ ..+...++..+.|.|.++|.+|-.||.-++.
T Consensus 591 DdE~VlQil~-~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 591 DDEIVLQILY-VFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred hHHHHHHHHH-HHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5566655443 33333322 22222222 2455666777899999999999888876665
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.12 Score=68.29 Aligned_cols=145 Identities=18% Similarity=0.226 Sum_probs=87.9
Q ss_pred hhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000143 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2058)
Q Consensus 1454 ~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2058)
+.+..++|.+++.....+...|+..-.-+-..++..|+.+. -.++.+.+-++|+++.+|..|+++++.+.. +
T Consensus 51 ~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l----LavNti~kDl~d~N~~iR~~AlR~ls~l~~----~ 122 (757)
T COG5096 51 EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL----LAVNTIQKDLQDPNEEIRGFALRTLSLLRV----K 122 (757)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHhhccCCCHHHHHHHHHHHHhcCh----H
Confidence 34556666666666655666665555555555555453322 233444555666666666666665555422 1
Q ss_pred hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000143 1534 EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2058)
Q Consensus 1534 ~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l 1613 (2058)
.-+..+++.+.+.++|+++.||+.|+-++..+.+. +++.
T Consensus 123 --------------------------------------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l- 161 (757)
T COG5096 123 --------------------------------------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDL- 161 (757)
T ss_pred --------------------------------------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhh-
Confidence 11234556666777777788888888888888774 3221
Q ss_pred hhhHhh-hhHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 000143 1614 IPYIGL-LLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2058)
Q Consensus 1614 ~pyl~~-ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~ 1649 (2058)
|.+. +...+..++.|.+|.|...|..++..+...
T Consensus 162 --~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 162 --YHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred --hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 2233 566677778899999988888887777654
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00021 Score=94.72 Aligned_cols=196 Identities=21% Similarity=0.227 Sum_probs=155.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH
Q 000143 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2058)
Q Consensus 1341 ~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~ 1419 (2058)
.-++.-+.+.+|..|..|...+..++..-+..... ...++-.+......+.|..+-..++..++.|+..++..|.+|..
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 33444445567999999999998888766522211 22455555555444447778888899999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChh--hHhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ--QLSQCL 1497 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~--~l~~~L 1497 (2058)
.+.|.++..++|....+|+++..+++.+.. ...+..+.+.+...+.+.+++.|..+..+++......+. .....+
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~ 412 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILN---STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV 412 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHh---cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH
Confidence 999999999999999999999999999976 334577889999999999999999988888887765442 123456
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHH
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lv 1539 (2058)
..++|.++...+|.+..||.+|..+++.+...++.+.+..++
T Consensus 413 ~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 413 KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 689999999999999999999999999999988866554433
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.45 Score=70.52 Aligned_cols=503 Identities=22% Similarity=0.261 Sum_probs=271.0
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc------ccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000143 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS------SLK-KYGIAATLREGLADRNSAKRREGALLAFECLC 1407 (2058)
Q Consensus 1335 ~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~------~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~ 1407 (2058)
....++.++......++...|..++.++..+++..... .+. ...++..+......+.++..|...+..+
T Consensus 478 ~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l---- 553 (2341)
T KOG0891|consen 478 LTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSL---- 553 (2341)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhh----
Confidence 45667777777788888999999999888888754320 010 0123333333322333666776654433
Q ss_pred HHhcccchhhHH--HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhH---HHHHHHhcc-CCChHHHHHHHHH
Q 000143 1408 EKLGRLFEPYVI--QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV---LPSLLKGLE-DKAWRTKQSSVQL 1481 (2058)
Q Consensus 1408 ~~lg~~~~p~l~--~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~l---lp~Ll~~L~-~~~~~~R~~a~~~ 1481 (2058)
++.|.+.+. ..+..++..+.|+.-.++.++...++.++...+.+.++.+ .+...+.+. +...+++..+...
T Consensus 554 ---~~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~ 630 (2341)
T KOG0891|consen 554 ---NERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKL 630 (2341)
T ss_pred ---ccchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHH
Confidence 234555442 3566677888899899999998888877665444333222 222222222 3344666667777
Q ss_pred HHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch---hHHhHHHHHHhccCCCChhHH--HH
Q 000143 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---EIASLVPTLLMGLTDPNDHTK--YS 1556 (2058)
Q Consensus 1482 Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~i~~lvp~Ll~~l~d~~~~vr--~a 1556 (2058)
+..+....+.-+.++...++-.+...+.|..+.|-.++..+++.++...++. ..+..++.+.+.+.|.....| .+
T Consensus 631 ~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~as 710 (2341)
T KOG0891|consen 631 LCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAA 710 (2341)
T ss_pred hhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHH
Confidence 7777777777788888888888899999999999999999999999987732 336777777777776655443 45
Q ss_pred HHHHHh----ccc--cccCChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHH-----
Q 000143 1557 LDILLQ----TTF--VNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEV----- 1624 (2058)
Q Consensus 1557 l~~L~~----~~f--~~~~~~~~l~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L----- 1624 (2058)
+..+++ ..+ .++.+.|. ++..+...++ .....+|+.+.+.+|+.+.. + ||........
T Consensus 711 lk~l~~l~s~~~~~v~p~~~~P~---ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~--d-----~~~~~~~~~~~~~~~ 780 (2341)
T KOG0891|consen 711 LKALGQLESSTGYVVDPYLDYPE---LLDILINILKTEQSSTIRREAIRLLGLLGAL--D-----PYKHKVTEGTSASKI 780 (2341)
T ss_pred HHHhhhhhcccceEecccccChH---HHHHHHHHHhHhhhhHHHHHHHHHhhhhccc--c-----hhHHHHHhhhhhHhh
Confidence 665554 222 23444443 2333333222 23446777777777755432 2 1211111111
Q ss_pred ----------------------------------HHhhCCCCH-HHHHHHHHHHHHHHHhhccc---CccchHHHHHhhc
Q 000143 1625 ----------------------------------KKVLVDPIP-EVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDAL 1666 (2058)
Q Consensus 1625 ----------------------------------~~~l~d~~~-~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L 1666 (2058)
...+.|+.- .-....+.+.-.+....|-+ +.++++|.++...
T Consensus 781 ~~~~~k~~~~~~~~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~ 860 (2341)
T KOG0891|consen 781 SSEQIKSDIDISLLESGVNPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVM 860 (2341)
T ss_pred hhccccccchHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHH
Confidence 111111100 00111111222222222221 3344444444433
Q ss_pred ccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCC---hhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHH
Q 000143 1667 KSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQR---ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 1743 (2058)
Q Consensus 1667 ~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~---~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll 1743 (2058)
+.. .+..+....+-++....... .+...+++.+.....+.+ ..+...+......+...++..|..|++..++.++
T Consensus 861 r~~-~~~~~~f~~~q~~~~~~~~~-~h~~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~~~~l 938 (2341)
T KOG0891|consen 861 RSC-PPNLREFYFQQLTSLVAIVR-QHIRPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELLPTML 938 (2341)
T ss_pred Hhc-CcchhHHHHHhhhhhhhccc-hhHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhccchh
Confidence 311 11122222222222211111 122334555554444433 3444455667778888899999999999999988
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHhc--ccchhchHHhHhhhcCCC--CHHHHHHHHHHHHHHHHHhhCCcccccccCCC
Q 000143 1744 DGLADENESVRDAALGAGHVLVEHYA--TTSLPLLLPAVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGS 1819 (2058)
Q Consensus 1744 ~~L~d~~~~VR~~a~~al~~lv~~~~--~~~l~~llp~L~~~l~d~--~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~ 1819 (2058)
..+.......|.........+...-. ........|.+.+.+.+. ...+|..+...++.+...
T Consensus 939 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t~~~l~~~-------------- 1004 (2341)
T KOG0891|consen 939 TVLQHDKSKDRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALITIGRLAQQ-------------- 1004 (2341)
T ss_pred eeecccccchHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHHHHHHHHh--------------
Confidence 87743333333333333332221111 112334566666666554 345555555555544211
Q ss_pred CCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHH
Q 000143 1820 DDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM 1887 (2058)
Q Consensus 1820 e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~ 1887 (2058)
.-..+...++...++..+.-. ..++...+..+..+....+..+..+.|.+-
T Consensus 1005 ----------------~~~~~~~s~i~~~~~r~l~~s-~el~~~~~~~l~~l~~~~~~~~~i~~p~~~ 1055 (2341)
T KOG0891|consen 1005 ----------------VDLSEYASRIIHPLVRVLSSS-PELRDVIMDTLIALVKQLGKDFAIFIPMVN 1055 (2341)
T ss_pred ----------------hHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHhhcCceeehHHHHH
Confidence 001122233444445554444 778888888888888776666555555544
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.12 Score=67.12 Aligned_cols=136 Identities=18% Similarity=0.343 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcC
Q 000143 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD 1976 (2058)
Q Consensus 1898 ~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D 1976 (2058)
...+|..++-+||.+|-.. ++....++|.+.+-|. .+...+|.+++.+++++..+... ..+.-+|.+...|+|
T Consensus 944 ~~~vra~~vvTlakmcLah-~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~~~L~D 1017 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAH-DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIAASLCD 1017 (1529)
T ss_pred chHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHHHHhcC
Confidence 3568999999999998753 3445678898888776 44578999999999988866532 236678899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhhcCCccchh
Q 000143 1977 SILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLLHALED-DQTSDTALDGLKQILSVRTTAVLPH 2039 (2058)
Q Consensus 1977 ~d~~VR~~Aa~a~~~l~~~~g~~-~~~~ilp~Ll~~L~~-~~~~~~al~aL~~i~~~~~~~~lp~ 2039 (2058)
+++-||..+.--+.++.+..--. .-.-++..++..+.. ++.+.-+=-.+.+++....+..+|+
T Consensus 1018 p~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~ 1082 (1529)
T KOG0413|consen 1018 PSVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPL 1082 (1529)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHH
Confidence 99999999999999987642111 123466777777764 4556667777888888777776663
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.5e-05 Score=70.16 Aligned_cols=55 Identities=29% Similarity=0.458 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000143 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2058)
Q Consensus 1472 ~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2058)
|++|..|+.+||.++...++.+.++++.++|.|..+|+|+++.||.+|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999999999999999865
|
... |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.027 Score=67.69 Aligned_cols=456 Identities=18% Similarity=0.147 Sum_probs=241.2
Q ss_pred HHHHHHHHHHHHHHHhHhccCC--cchHHHH--------H-HHHhhhCCCCHHHHHHHHHhhHhhHhhc----------c
Q 000143 1274 DLVREGVVIFTGALAKHLAKDD--PKVHAVV--------D-KLLDVLNTPSEAVQRAVSSCLSPLMQSM----------Q 1332 (2058)
Q Consensus 1274 ~~vR~~av~~Lg~La~~l~~~~--p~i~~iv--------~-~Ll~~L~~~~~~V~~av~~~L~~l~~~~----------~ 1332 (2058)
..||..++.++..+.+.+++.. -|...++ | .|.-.|+|++...|.-+...+..+.+.. +
T Consensus 10 akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~ 89 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTS 89 (728)
T ss_pred HHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccC
Confidence 3789999999988887654321 0111000 1 2334678888776654444433333221 1
Q ss_pred c------------chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccc---hhchHHHHHHHHhCCCCHHHHH
Q 000143 1333 D------------EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK---KYGIAATLREGLADRNSAKRRE 1397 (2058)
Q Consensus 1333 ~------------~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~---~~~il~~L~~~l~~~~~~~~R~ 1397 (2058)
+ ...+.-+.++-.|..+..+.+-....+||+.+++....+.++ .+.+...+...++++ |+.+|.
T Consensus 90 ~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~-d~~v~v 168 (728)
T KOG4535|consen 90 DHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHK-DVNVRV 168 (728)
T ss_pred CcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcC-CCChhh
Confidence 1 123344455555655555667778889999999876655543 124556666777776 899999
Q ss_pred HHHHHHHHHHHHhcccchhhHH------------------------HH--------------------------------
Q 000143 1398 GALLAFECLCEKLGRLFEPYVI------------------------QM-------------------------------- 1421 (2058)
Q Consensus 1398 ~al~al~~L~~~lg~~~~p~l~------------------------~l-------------------------------- 1421 (2058)
.++..++.+...-.. .|-+. ++
T Consensus 169 s~l~~~~~~v~t~~~--~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~ 246 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHAP--LPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVV 246 (728)
T ss_pred HHHHHHHHHHhcCCC--CHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeee
Confidence 999999888653210 11110 00
Q ss_pred --------HHHHHHHcCC--CCHHHHHHHHHHHHHHHHhhhhhh--HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhC
Q 000143 1422 --------LPLLLVAFSD--QVVAVREAAECAARAMMSQLSAQG--VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA 1489 (2058)
Q Consensus 1422 --------lp~Ll~~l~D--~~~~VR~aA~~al~~l~~~l~~~~--v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~ 1489 (2058)
......+++. .-..||-.|.+.+..++..++-.. ..++...+..++.+....++..+..++..+.+..
T Consensus 247 ~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~l 326 (728)
T KOG4535|consen 247 LPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGL 326 (728)
T ss_pred cCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHH
Confidence 0000111110 012477788888888877766432 2556666677778877777777777777666553
Q ss_pred hhhHhh----------hhhhHHH--HHHHHhcC-CCHHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHhccCCCChhH
Q 000143 1490 PQQLSQ----------CLPKIVP--KLTEVLTD-THPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDPNDHT 1553 (2058)
Q Consensus 1490 p~~l~~----------~L~~Iip--~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~---~~~i~~lvp~Ll~~l~d~~~~v 1553 (2058)
..+..+ .+-.++- ......-| .++..+.++|.++.+++..-- +..-+...+.++....|..+..
T Consensus 327 v~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~l 406 (728)
T KOG4535|consen 327 IQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRL 406 (728)
T ss_pred hhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHH
Confidence 321111 0111110 11112223 356677888888888865321 1122455666666666554433
Q ss_pred -H-HHHHHHHhcc--ccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC
Q 000143 1554 -K-YSLDILLQTT--FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629 (2058)
Q Consensus 1554 -r-~al~~L~~~~--f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~ 1629 (2058)
+ +|+..++-.- ..-..+......-...+.+.+.|..-.+|.+++-.+|++...+ .
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL---------------------~ 465 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDAL---------------------I 465 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHH---------------------H
Confidence 3 5665544200 0001111112222333444556666667777776666665432 2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch---hHHHHhhHHHHHhh-
Q 000143 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT---VYFEHILPDIIRNC- 1705 (2058)
Q Consensus 1630 d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~---~~l~~llp~Ll~~l- 1705 (2058)
+..|.+|..+.++.|.+...+ +.. ....+-....+|..+..+|+...+.+.. -.+.+++..-+..+
T Consensus 466 ~~~Ps~~s~~eR~sg~ll~~~--------~~~--A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~ 535 (728)
T KOG4535|consen 466 VNMPTPDSFQERFSGLLLLKM--------LRS--AIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALI 535 (728)
T ss_pred cCCCCchHHHHHHHHHHHHHH--------HHH--HHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcc
Confidence 344555555555555554322 000 1111112233666667777666555431 11222322222222
Q ss_pred ----ccCChhHHHHHHHHHHHhHHHhchhH--HHhHHHHHHHHHHhccC-CCHHHHHHHHHHHHH
Q 000143 1706 ----SHQRASVRDGYLTLFKYLPRSLGVQF--QNYLQQVLPAILDGLAD-ENESVRDAALGAGHV 1763 (2058)
Q Consensus 1706 ----~~~~~~vR~~al~~l~~la~~~g~~f--~pyl~~ilp~Ll~~L~d-~~~~VR~~a~~al~~ 1763 (2058)
......||-.++.+++++.+.-.-.| .++.+.++|.+...+.+ .+-.||..|+.++..
T Consensus 536 ~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 536 STVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred cceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 22367888889999998876432222 25667788888887754 455678777776653
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.062 Score=70.81 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=99.8
Q ss_pred ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Q 000143 1332 QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG 1411 (2058)
Q Consensus 1332 ~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg 1411 (2058)
|++...+++.++.... ..+.+.++---.-|-...+.-+...+ ..++++..-++++ |+..|..|+.+++.+-
T Consensus 50 G~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~l---LavNti~kDl~d~-N~~iR~~AlR~ls~l~---- 120 (757)
T COG5096 50 GEDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELAL---LAVNTIQKDLQDP-NEEIRGFALRTLSLLR---- 120 (757)
T ss_pred CCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHH---HHHHHHHhhccCC-CHHHHHHHHHHHHhcC----
Confidence 5667888888888877 55666766665556555555432221 3466677777777 8999999988877662
Q ss_pred ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-Hh-HHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KL-VLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1412 ~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~-llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
....++.+++.+.+++.|+++.||+.|+-|+..+.+. +++.+ .. ..-.+...+.|.++.+...|+.++..+-
T Consensus 121 --~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l-d~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 121 --VKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL-DKDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred --hHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc-CHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 4567778999999999999999999999999988643 33333 22 3333444556888888877766665543
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.019 Score=70.10 Aligned_cols=264 Identities=20% Similarity=0.150 Sum_probs=159.1
Q ss_pred HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhcccch
Q 000143 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYATTSL 1773 (2058)
Q Consensus 1695 ~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~-~~~VR~~a~~al~~lv~~~~~~~l 1773 (2058)
..++-.+.+...|++..+|..++.++++.+...+.....|...++..++.+|-|. +.+|.-.++.++..+........+
T Consensus 257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 4555566667778899999999999999999888888889999999999988765 477888888888877766554443
Q ss_pred hc-hHH---hHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHH
Q 000143 1774 PL-LLP---AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849 (2058)
Q Consensus 1774 ~~-llp---~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L 1849 (2058)
.. +++ .+..++++++...|.++..++|.|.. ++|...+ +.+ +++.. .-+..+
T Consensus 337 ~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~-l~g~~~e---------~~F-te~v~-------------k~~~~l 392 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK-LAGGGWE---------EFF-TEQVK-------------KRLAPL 392 (533)
T ss_pred hhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH-HcCCCch---------hhh-HHHHH-------------hccccc
Confidence 32 222 34456678899999999999999863 2222111 111 11110 012234
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHhhChh-hHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC---cchhhchH
Q 000143 1850 YMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG---ERVLPSII 1925 (2058)
Q Consensus 1850 ~~~~~D~~~~VR~aA~~~l~~lv~~~~~-~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg---~~~l~~ll 1925 (2058)
...++|..+.|-.++-..+..+..|... ....+++...+. ... |..+. ....|..+. .+.+..+.
T Consensus 393 llhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~--------~~~-~~q~F--yn~~c~~L~~i~~d~l~~~~ 461 (533)
T KOG2032|consen 393 LLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDT--------DMA-RFQAF--YNQWCIQLNHIHPDILMLLL 461 (533)
T ss_pred eeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHH--------hHH-HHHHH--HHHHHHHHhhhCHHHHHHHH
Confidence 4456787777766655555444443331 122222221111 110 11111 111122221 11122222
Q ss_pred HHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhH--HhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1926 PILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSF--MDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2058)
Q Consensus 1926 p~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~--~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~ 1994 (2058)
....-.+++..+.+|..+..-.+....+..++. .++ ..++...+.....|+-++|+..|..|++.+..
T Consensus 462 t~~~~~f~sswe~vr~aavl~t~~~vd~l~~~~-c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 462 TEDQHIFSSSWEQVREAAVLKTTRSVDSLVRAA-CSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HhchhheecchHHHHHHHHHHHHHHHHHhHHHH-HHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 333334566677888887776666655554432 222 25666777777899999999999999998753
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.036 Score=73.62 Aligned_cols=355 Identities=14% Similarity=0.159 Sum_probs=196.4
Q ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh-hH--HhHHHHHHHhccCCChHH
Q 000143 1398 GALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-GV--KLVLPSLLKGLEDKAWRT 1474 (2058)
Q Consensus 1398 ~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~-~v--~~llp~Ll~~L~~~~~~~ 1474 (2058)
.++..+..+++...-...-.-..+++.|.+.+..++..+.-.+...+..++-..... .+ ..++|.+.+.+.+++...
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l 347 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDL 347 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHH
Confidence 344556666654432222223467888888888888888888888888876322221 12 568999999999888888
Q ss_pred HHHHHHHHHHHHhhChh--hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch-h--HHhHHHHHHhccC-C
Q 000143 1475 KQSSVQLLGAMAYCAPQ--QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-E--IASLVPTLLMGLT-D 1548 (2058)
Q Consensus 1475 R~~a~~~Lg~la~~~p~--~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~--i~~lvp~Ll~~l~-d 1548 (2058)
+..++.+|.+++....- ++.. ..++|.+...+.|++ .|..+...|..++..-... . ..+.+|.+++.+. .
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~--~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVS--LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHH--CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC
Confidence 99999999999875332 2322 368899999998754 4556777777776532111 1 1345666666533 3
Q ss_pred CChhHH-HHHHHHHhccccc-cCChh-hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHH
Q 000143 1549 PNDHTK-YSLDILLQTTFVN-TVDAP-SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625 (2058)
Q Consensus 1549 ~~~~vr-~al~~L~~~~f~~-~~~~~-~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~ 1625 (2058)
+++.+. +.+..+....... +...- .-..+-..+.+.++.+++- ..+.+-|++.. ++. ....+...+..+.
T Consensus 424 ~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h--~~~-~k~~f~~~i~~L~ 496 (708)
T PF05804_consen 424 SEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQH--DGP-LKELFVDFIGDLA 496 (708)
T ss_pred CCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhc--Cch-HHHHHHHHHHHHH
Confidence 444333 2333322211100 00000 0011222333444544432 33467777663 321 1222222333344
Q ss_pred HhhCCCCHHHHHHHHHHHHHHHHhhcc--c---Cc--cchHHHHHhhcccCCC-hHHHhhHHHHHHHHHHHhchh-HH--
Q 000143 1626 KVLVDPIPEVRSVAARAIGSLIRGMGE--E---NF--PDLVSWLLDALKSDNS-NVERSGAAQGLSEVLAALGTV-YF-- 1694 (2058)
Q Consensus 1626 ~~l~d~~~~vR~~a~~aLg~l~~~lg~--~---~~--~~llp~L~~~L~~d~~-~~~R~~aa~~L~~i~~~~g~~-~l-- 1694 (2058)
..+..++. .+..++++|.++.---+ + .+ ..++|++.+.|..... .+....+...+|.++..-... .+
T Consensus 497 ~~v~~~~~--ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~ 574 (708)
T PF05804_consen 497 KIVSSGDS--EEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAK 574 (708)
T ss_pred HHhhcCCc--HHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 44444332 25677888888763212 2 12 3699999999974432 224445555556554321111 11
Q ss_pred HHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHh--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 000143 1695 EHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNY--LQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1695 ~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~py--l~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~ 1766 (2058)
..+++.+...+... +.+.--.++.+|..+... +...... -..+...++..+.|.++.||..+-.++..+.+
T Consensus 575 sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e 649 (708)
T PF05804_consen 575 SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAE 649 (708)
T ss_pred CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 35666666666543 344444455555555433 2211111 14577888999999999999998888877654
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.035 Score=70.43 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=87.4
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchH---
Q 000143 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVH--- 1299 (2058)
Q Consensus 1223 ~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~--- 1299 (2058)
+.|...+..++-+++.-.+..+-. |...-.-+|.++...|-. .+ + .++. .+-.+..++.....+..-++
T Consensus 27 ~~Lek~~~~~KIeamK~ii~~mln-Ge~~p~Llm~IiRfvlps--~~-~---elKK-Lly~ywE~vPKt~~dgkl~~EMI 98 (948)
T KOG1058|consen 27 EKLEKGDDEVKIEAMKKIIALMLN-GEDLPSLLMTIIRFVLPS--RN-H---ELKK-LLYYYWELVPKTDSDGKLLHEMI 98 (948)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHc-CCCchHHHHHHhheeecc--Cc-h---HHHH-HHHHHHHHccccCCCcccHHHHH
Confidence 456667777887776655544433 333333344444444322 11 1 2333 34444445443333222223
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhch
Q 000143 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379 (2058)
Q Consensus 1300 ~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~i 1379 (2058)
-+....-+-|++|++.+|-.....+..+-. ++-..+++|.+.+.|.+. ..-+|+.|..++..+.+.. ...++ +.
T Consensus 99 Lvcna~RkDLQHPNEyiRG~TLRFLckLkE--~ELlepl~p~IracleHr-hsYVRrNAilaifsIyk~~-~~L~p--Da 172 (948)
T KOG1058|consen 99 LVCNAYRKDLQHPNEYIRGSTLRFLCKLKE--PELLEPLMPSIRACLEHR-HSYVRRNAILAIFSIYKNF-EHLIP--DA 172 (948)
T ss_pred HHHHHHhhhccCchHhhcchhhhhhhhcCc--HHHhhhhHHHHHHHHhCc-chhhhhhhheeehhHHhhh-hhhcC--Ch
Confidence 234556677899999998755444332211 112345566666655443 4679999999999988763 22222 34
Q ss_pred HHHHHHHHhCCCCHHHHHHHHH
Q 000143 1380 AATLREGLADRNSAKRREGALL 1401 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~ 1401 (2058)
-+.+...+..+.|+.....|..
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi 194 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFL 194 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHH
Confidence 4445555555556666555544
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.14 Score=65.80 Aligned_cols=458 Identities=16% Similarity=0.141 Sum_probs=227.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 000143 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 1462 (2058)
Q Consensus 1383 L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~ 1462 (2058)
+.+..+++ |...|...-.+++.++.... -+.-+...+.+.....++.+|-.|+++|-.+....--.++.+.
T Consensus 69 ~tKlfQsk-d~~LRr~vYl~Ikels~ise-----dviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery--- 139 (865)
T KOG1078|consen 69 ITKLFQSK-DVSLRRMVYLAIKELSKISE-----DVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERY--- 139 (865)
T ss_pred HHHHHhhc-CHHHHHHHHHHHhhccccch-----hhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHH---
Confidence 33444444 56666666555554433211 1223344555555556777888888877776533222222222
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHH
Q 000143 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2058)
Q Consensus 1463 Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~L 1542 (2058)
+-+++-+.+..++-+|+-.=-.+............ ..+.+..++.+..|+..|..-|.++-+.-+ -.+..++..+
T Consensus 140 ~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~----neiqea~~s~~~m~QyHalglLyqirk~dr-la~sklv~~~ 214 (865)
T KOG1078|consen 140 MKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWA----NEVQEAVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLVQKF 214 (865)
T ss_pred HHhHeeccccccchHHHHHHhhhhcccHHHHHHHH----HhhhhccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHH
Confidence 22334455554444333222222222222232222 222334444455777766666666543211 0112222222
Q ss_pred Hh-ccCCCChh---HHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh
Q 000143 1543 LM-GLTDPNDH---TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618 (2058)
Q Consensus 1543 l~-~l~d~~~~---vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~ 1618 (2058)
.. .+.+|-.. +|.+.+.+-+ +......+.|.+...+..+..-+-.+|+..+..+... .+..+.|
T Consensus 215 ~~~~~~~~~A~~~lir~~~~~l~~-------~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~--~~r~l~p--- 282 (865)
T KOG1078|consen 215 TRGSLKSPLAVCMLIRIASELLKE-------NQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT--NSRELAP--- 282 (865)
T ss_pred ccccccchhHHHHHHHHHHHHhhh-------cccchhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc--CHhhcch---
Confidence 22 22333221 1222222211 1233445788888999888888888898888877653 2234443
Q ss_pred hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhh
Q 000143 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHIL 1698 (2058)
Q Consensus 1619 ~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~ll 1698 (2058)
.+..+...+..+.+.+|.+|.+.|..++....... .-+=+-| +.|-+|. .|..+.-++..+...-.....+.+|
T Consensus 283 -avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v-~~cN~el-E~lItd~---NrsIat~AITtLLKTG~e~sv~rLm 356 (865)
T KOG1078|consen 283 -AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV-TVCNLDL-ESLITDS---NRSIATLAITTLLKTGTESSVDRLM 356 (865)
T ss_pred -HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc-cccchhH-Hhhhccc---ccchhHHHHHHHHHhcchhHHHHHH
Confidence 56677777888999999999999999987654320 0011111 2222222 4677777777777654445666777
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhcccchhchH
Q 000143 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYATTSLPLLL 1777 (2058)
Q Consensus 1699 p~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~-~~~VR~~a~~al~~lv~~~~~~~l~~ll 1777 (2058)
..+-..+.+-+..-+..+..++..++..+...-.- +++.+...|.++ .-+-+....+++-.++...... -...+
T Consensus 357 ~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~----~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds-Ke~~L 431 (865)
T KOG1078|consen 357 KQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTV----MMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS-KERGL 431 (865)
T ss_pred HHHHHHHHhccccceEEeHHHHHHHHhhccHHHHH----HHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcch-hhHHH
Confidence 76666666555555555556666666655443222 233333333332 1223444455554444322111 11122
Q ss_pred HhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCC
Q 000143 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS 1857 (2058)
Q Consensus 1778 p~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~ 1857 (2058)
..|.+.+.|... +.-+...++-+ |..++... .+. ..+..+|....=.+
T Consensus 432 ~~LCefIEDce~--~~i~~rILhlL-----G~EgP~a~----~Ps---------------------kyir~iyNRviLEn 479 (865)
T KOG1078|consen 432 EHLCEFIEDCEF--TQIAVRILHLL-----GKEGPKAP----NPS---------------------KYIRFIYNRVILEN 479 (865)
T ss_pred HHHHHHHHhccc--hHHHHHHHHHH-----hccCCCCC----Ccc---------------------hhhHHHhhhhhhhh
Confidence 233333322211 11122222222 22221100 000 01111121111123
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELV 1913 (2058)
Q Consensus 1858 ~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~ 1913 (2058)
..||.+|..++..+..+.+ ...|.+...+.+++.|++.++|..|...+..+-
T Consensus 480 ~ivRaaAv~alaKfg~~~~----~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 480 AIVRAAAVSALAKFGAQDV----VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhHHHHHHHHHHHhcCCC----CccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 5789999888877763322 344566667788899999999998888776665
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.29 Score=62.15 Aligned_cols=350 Identities=15% Similarity=0.187 Sum_probs=191.9
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHhcccc-hhhHHHHH
Q 000143 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL----ADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQML 1422 (2058)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l----~~~~~~~~R~~al~al~~L~~~lg~~~-~p~l~~ll 1422 (2058)
.+..+..+.-+.-.+.-+++.. .+++..+...+ .+. |+..-.-|+.+++.++ ++.+ +.|..++
T Consensus 84 ss~kysEKqIGYl~is~L~n~n-------~dl~klvin~iknDL~sr-n~~fv~LAL~~I~niG---~re~~ea~~~DI- 151 (938)
T KOG1077|consen 84 SSNKYSEKQIGYLFISLLLNEN-------SDLMKLVINSIKNDLSSR-NPTFVCLALHCIANIG---SREMAEAFADDI- 151 (938)
T ss_pred hcCCccHHHHhHHHHHHHHhcc-------hHHHHHHHHHHHhhhhcC-CcHHHHHHHHHHHhhc---cHhHHHHhhhhh-
Confidence 4445555554544555554432 13444443333 333 4555555555555443 2322 3333333
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh-HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHH
Q 000143 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2058)
Q Consensus 1423 p~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~-v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Ii 1501 (2058)
|.++ .-++..+.||+.|+-|+-++.+..++-. .......+...|+|.+.++-.++..++..++..-|+....+++..+
T Consensus 152 ~KlL-vS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~av 230 (938)
T KOG1077|consen 152 PKLL-VSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAV 230 (938)
T ss_pred HHHH-hCCcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHH
Confidence 2222 3466788999999999988887754322 2456677788889998888888999999999888888777776666
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHH
Q 000143 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIV 1581 (2058)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L 1581 (2058)
..|........... ..-.-..++.|.+..=+=.+++...-| .|.+..+.+...+
T Consensus 231 s~L~riv~~~~t~~-------qdYTyy~vP~PWL~vKl~rlLq~~p~~-------------------~D~~~r~~l~evl 284 (938)
T KOG1077|consen 231 SRLSRIVVVVGTSL-------QDYTYYFVPAPWLQVKLLRLLQIYPTP-------------------EDPSTRARLNEVL 284 (938)
T ss_pred HHHHHHHhhcccch-------hhceeecCCChHHHHHHHHHHHhCCCC-------------------CCchHHHHHHHHH
Confidence 55544322110000 000001122333321111122222111 1111122222222
Q ss_pred HHhhcC-----CCHHHH----HH--HHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1582 HRGLRE-----RSAETK----KK--AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2058)
Q Consensus 1582 ~~~L~d-----~s~~vr----~~--A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l 1650 (2058)
.+.|+. .+.++. .. -.++|.-... + |++ ...+...+..|-..+.+...++|.-+.+.+..++..-
T Consensus 285 ~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h-~-D~e--~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~ 360 (938)
T KOG1077|consen 285 ERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIH-L-DSE--PELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSE 360 (938)
T ss_pred HHHHhccccCccccchHhhhhHHHHHHHHHHHHHH-c-CCc--HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhcc
Confidence 222211 000110 00 1122222222 2 211 1234455666777777888889988888888877541
Q ss_pred cc-cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch
Q 000143 1651 GE-ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2058)
Q Consensus 1651 g~-~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~ 1729 (2058)
.. +....-...++..|+.+.+..+|..+..-|-.++. .+..+.++..+++.+...++.+|+....=..-+++.+..
T Consensus 361 ~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD---~~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyAt 437 (938)
T KOG1077|consen 361 FSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD---VSNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYAT 437 (938)
T ss_pred chHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc---hhhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcC
Confidence 10 11222345566778878888899988887766654 334567888888888889999999988877888887777
Q ss_pred hHHHhHHHHHHHHH
Q 000143 1730 QFQNYLQQVLPAIL 1743 (2058)
Q Consensus 1730 ~f~pyl~~ilp~Ll 1743 (2058)
++.=|+.-++..+-
T Consensus 438 Dy~WyVdviLqLir 451 (938)
T KOG1077|consen 438 DYSWYVDVILQLIR 451 (938)
T ss_pred CcchhHHHHHHHHH
Confidence 77667766666554
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.043 Score=69.72 Aligned_cols=416 Identities=13% Similarity=0.121 Sum_probs=198.0
Q ss_pred HHHHHhhh-hhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC--ccchhhHHHHH---HHHhcccCCChhH
Q 000143 1199 LALHSAAD-VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG--RDNVSLLFPIF---ENYLNKKASDEEK 1272 (2058)
Q Consensus 1199 ~al~~l~~-~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g--~~~~~~Ll~~l---~~~L~~~~~~~e~ 1272 (2058)
.+++.+.. .+..+..|.++-.++.-.+-.++...++ .+....+++.... .+..++++-++ .+-|++ +
T Consensus 39 eamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKK-Lly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQH------P 111 (948)
T KOG1058|consen 39 EAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKK-LLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQH------P 111 (948)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHH-HHHHHHHHccccCCCcccHHHHHHHHHHHhhhccC------c
Confidence 34444332 3344555655444443345455554443 2233344443322 12344444333 233333 3
Q ss_pred HHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc---ccchHHHHHHHHHHHhcC
Q 000143 1273 YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM---QDEAPTLVSRLLDQLMKS 1349 (2058)
Q Consensus 1273 ~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~---~~~~~~~v~~Ll~~L~~~ 1349 (2058)
+..+|...+.+|.++-+ ..-+++++|.+.+.|.+++..||+.+.-|+..+.... -++.++++...+ ..+
T Consensus 112 NEyiRG~TLRFLckLkE-----~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL---~~e 183 (948)
T KOG1058|consen 112 NEYIRGSTLRFLCKLKE-----PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFL---LTE 183 (948)
T ss_pred hHhhcchhhhhhhhcCc-----HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHH---Hhc
Confidence 44799999999888743 1235678888889999999999999988887776553 223455544443 345
Q ss_pred CCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHH
Q 000143 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAK--RREGALLAFECLCEKLGRLFEPYVIQMLPLLLV 1427 (2058)
Q Consensus 1350 ~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~--~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~ 1427 (2058)
.|+...|.|...|...-. ...+.++...+.+-.+|. ..-..+..+-..+..-+. --...+..++.
T Consensus 184 ~DpsCkRNAFi~L~~~D~---------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~----~~~~~i~~i~~ 250 (948)
T KOG1058|consen 184 QDPSCKRNAFLMLFTTDP---------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA----EKARYIRCIYN 250 (948)
T ss_pred cCchhHHHHHHHHHhcCH---------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH----HhhHHHHHHHH
Confidence 567777777665543321 122333333332211111 111111111111111000 01233445555
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHH
Q 000143 1428 AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTE 1506 (2058)
Q Consensus 1428 ~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~ 1506 (2058)
.+...++.|+..|..++-.+.. .+..++.....+++.+. .++-+++.-.+..|..+..... ..+.+++--++.
T Consensus 251 lL~stssaV~fEaa~tlv~lS~--~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~----~il~~l~mDvLr 324 (948)
T KOG1058|consen 251 LLSSTSSAVIFEAAGTLVTLSN--DPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHE----KILQGLIMDVLR 324 (948)
T ss_pred HHhcCCchhhhhhcceEEEccC--CHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhH----HHHHHHHHHHHH
Confidence 6666677777766555544421 12223333333333332 3344555444555555542222 223344445566
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhc
Q 000143 1507 VLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2058)
Q Consensus 1507 ~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~ 1586 (2058)
+|+.++-.||..+..-.-.++. ...+.+++..|.+-+.+.... -.
T Consensus 325 vLss~dldvr~Ktldi~ldLvs---srNvediv~~Lkke~~kT~~~--------------------------------e~ 369 (948)
T KOG1058|consen 325 VLSSPDLDVRSKTLDIALDLVS---SRNVEDIVQFLKKEVMKTHNE--------------------------------ES 369 (948)
T ss_pred HcCcccccHHHHHHHHHHhhhh---hccHHHHHHHHHHHHHhcccc--------------------------------cc
Confidence 7788888888877665544443 233445555554433222110 01
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhc
Q 000143 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL 1666 (2058)
Q Consensus 1587 d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L 1666 (2058)
|.+..-|..-.+.+...+. .+..+...+++.++..+.|.++..-......+....+.+.. ....++..|++.+
T Consensus 370 d~~~~yRqlLiktih~cav------~Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~-Lr~~ii~~l~~~~ 442 (948)
T KOG1058|consen 370 DDNGKYRQLLIKTIHACAV------KFPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN-LRASIIEKLLETF 442 (948)
T ss_pred ccchHHHHHHHHHHHHHhh------cChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHhh
Confidence 1122233333333333322 12334556677777777776655333333333322222211 1123444455554
Q ss_pred ccCCChHHHhhHHHHHHHHHHHhc
Q 000143 1667 KSDNSNVERSGAAQGLSEVLAALG 1690 (2058)
Q Consensus 1667 ~~d~~~~~R~~aa~~L~~i~~~~g 1690 (2058)
..-.+...-.+++|.+|+.+.+.+
T Consensus 443 ~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 443 PQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred hhhcccccchhHHHHHHHHHhhhH
Confidence 432233334467777777766554
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.014 Score=71.14 Aligned_cols=232 Identities=19% Similarity=0.220 Sum_probs=154.6
Q ss_pred cchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc
Q 000143 1296 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI 1371 (2058)
Q Consensus 1296 p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~----~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~ 1371 (2058)
+-+..++..+.+...+|+..++..++.||+......++.. +..+..++-.|.+..+..+.-.+..+|..+......
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 4577888889999999999999999999988877654433 445666667777777788999999999888775544
Q ss_pred cccchh--chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHH---HHHHHHcCCCCHHHHHHHHHHHH
Q 000143 1372 SSLKKY--GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQML---PLLLVAFSDQVVAVREAAECAAR 1445 (2058)
Q Consensus 1372 ~~l~~~--~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l-~~ll---p~Ll~~l~D~~~~VR~aA~~al~ 1445 (2058)
..+..+ ++.-.+.+...+. +++.|-++..+||.++.-.|+.-+.+. .++. ..++--+.|+++.|-.++...+.
T Consensus 334 ~~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred cchhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 333222 3444455555665 889999999999999998886544432 2332 23444678999988877766665
Q ss_pred HHHHhhhhhhH--------------------------HhHHHHHHHhc-------cCCCh-HHHHHHHHHHHHHHhhChh
Q 000143 1446 AMMSQLSAQGV--------------------------KLVLPSLLKGL-------EDKAW-RTKQSSVQLLGAMAYCAPQ 1491 (2058)
Q Consensus 1446 ~l~~~l~~~~v--------------------------~~llp~Ll~~L-------~~~~~-~~R~~a~~~Lg~la~~~p~ 1491 (2058)
.+..++..+.+ +.+.|.++-.+ -+..| .+|.++...-+.+......
T Consensus 413 ~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l~~ 492 (533)
T KOG2032|consen 413 TCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSLVR 492 (533)
T ss_pred hcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHHHHhHH
Confidence 54433322211 12222222221 23467 6777777766666655444
Q ss_pred hHhhh--hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1492 QLSQC--LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1492 ~l~~~--L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
+..++ ...+...+..+..|+-|+|+..|..|++.+..
T Consensus 493 ~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 493 AACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 43332 23566677778889999999999999987653
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.59 E-value=1.2 Score=66.34 Aligned_cols=532 Identities=18% Similarity=0.197 Sum_probs=254.4
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchh-------H
Q 000143 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-------I 1535 (2058)
Q Consensus 1463 Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~-------i 1535 (2058)
+++.+.+..-..|.+|+..+..++...|..+-+++..++..+.....|+++.+|..||.++........+.. +
T Consensus 139 ~~ew~~~~~~~~~~~a~~~~~~l~~~~P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~~~~~~~~~ 218 (2341)
T KOG0891|consen 139 LIEWLGERQEYRRLAAVLIIKELADNVPTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQREAKLKPQWY 218 (2341)
T ss_pred HHHHhhhhhhhhhHHHHHhhhhHhhcCcHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhccchhhhHHH
Confidence 333334444556778889999999999999999999999999999999999999999999998877665544 2
Q ss_pred HhHHHHHHhccCCCChhHHH---HHHHHHh--ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCC
Q 000143 1536 ASLVPTLLMGLTDPNDHTKY---SLDILLQ--TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610 (2058)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~vr~---al~~L~~--~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~ 1610 (2058)
+..+...-..+..+...... ..+.+.. ..|....+ ...+-.....++++. .++.......+.++......
T Consensus 219 ~rcvd~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~~~~~~~~~~~lk~~--~i~~~l~~~~~~~~~~~~~~ 293 (2341)
T KOG0891|consen 219 QRCVDEARHGLSSDGVKIHASLLVYNELLRISDPFLEKYD---STCVRQAKGKLLKSI--VIRMTLSQILPLLAAFNPAK 293 (2341)
T ss_pred HHHHHhccccccchHHHhhhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHhccc--cHHHHHHhccHHHhhhhhhh
Confidence 22222111111111100000 0000000 00000000 000000011111221 11111111112222211111
Q ss_pred CchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC---ccchHHHHHhhcccCCChHH-H-hhHHHHHHHH
Q 000143 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLDALKSDNSNVE-R-SGAAQGLSEV 1685 (2058)
Q Consensus 1611 ~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~---~~~llp~L~~~L~~d~~~~~-R-~~aa~~L~~i 1685 (2058)
... .|+...|..++..+... ...+...++.++-+++..+ ...+...+.+.+....-... + .....+++.+
T Consensus 294 ~~~-~~l~~~~~~~l~~~~~~----~~~~~~~i~~ia~al~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (2341)
T KOG0891|consen 294 FQV-KYLHTEMDHLLSILRKE----KTRAFVSIGEIAVALGSSMSPYLSNILDHIRQTLPTKDLARKKFEKSVFTCIGLL 368 (2341)
T ss_pred hHH-HHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHhhhhhhhhhcchhhhhhhcchhhhHHHHhcchhHHHHHHHH
Confidence 111 45555555555554411 1567778888888777652 22222333333322111101 1 1344566777
Q ss_pred HHHhchhHHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHH--------------hccCC
Q 000143 1686 LAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD--------------GLADE 1749 (2058)
Q Consensus 1686 ~~~~g~~~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~--------------~L~d~ 1749 (2058)
+..+|+..+..+...++..+... ....++........++.-.+.-+ +++-..+..++. .++.+
T Consensus 369 ~~a~~~~~~~~~~~~il~~~~~~~~~~~l~e~l~~l~~rl~~l~~~i~-~rll~~~~~vl~~~a~~~~~~~~vl~~~~~p 447 (2341)
T KOG0891|consen 369 ASALGPADQKDLNKDILEQMFKCTLSDSLLERLFILSQRIPKLGQSIQ-DRLLNMTSQVLSGKAFIQPGQFTVLPKLAIP 447 (2341)
T ss_pred hhccCHHHHHhHHHHHHHHHhcCCchHHHHHHHHHHHHhccchhhHHH-HHHHHHHHHHHhCccccCccccCccchhccc
Confidence 77777776666666666665543 34444444444444433222211 111111111111 00000
Q ss_pred C------HHHHHHHHHHHHHHHHH-hcccchhchHHh-HhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCC
Q 000143 1750 N------ESVRDAALGAGHVLVEH-YATTSLPLLLPA-VEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDD 1821 (2058)
Q Consensus 1750 ~------~~VR~~a~~al~~lv~~-~~~~~l~~llp~-L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~ 1821 (2058)
. ..+-..+..++..+-.. +........+.. +......++..+|..+...+..++......+.+
T Consensus 448 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~--------- 518 (2341)
T KOG0891|consen 448 KAILQKTGDSTDDIQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQT--------- 518 (2341)
T ss_pred chhhhhcccccHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcc---------
Confidence 0 00001122233322111 111111112222 223345567788888766666654321110000
Q ss_pred CCcchHHHHHHHHHHhChhhHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHH
Q 000143 1822 EGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE 1900 (2058)
Q Consensus 1822 ~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~-~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~ 1900 (2058)
..+ . . ..+..++..+..+ ..|.+..+|......+. ....-.---|..+......+.+....
T Consensus 519 --~~~--~----~-----~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~-----~~~~~~laQ~~~lr~~~~al~~~~l~ 580 (2341)
T KOG0891|consen 519 --SPH--A----L-----QVVKEVLSALLTVAIADTDPDIRIRVLSSLN-----ERFDAQLAQPDLLRLLFIALHDENFA 580 (2341)
T ss_pred --cch--H----H-----HHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----cchhhhhcCchhHHHHHHHhhhhhhh
Confidence 000 0 0 1222334444333 56666666654433322 00000011123333344556777777
Q ss_pred HHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCC----CChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcC
Q 000143 1901 RRQVAGRALGELVRKLGERVLPSIIPILSRGLKD----PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD 1976 (2058)
Q Consensus 1901 ~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d----~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D 1976 (2058)
.+..+...+|.++..-..-+++.+--.....++. ....+......-+.+++... +.-..+|++.++..+...+.|
T Consensus 581 ~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~-~~~i~~~v~~~l~~~~~~~~~ 659 (2341)
T KOG0891|consen 581 IQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISS-PVLISPYVGPILLVLLPKLQD 659 (2341)
T ss_pred hHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH-HHHHHhhcCchHHHHHHHHhc
Confidence 7887777777665432211233332222222221 11111112222223333222 345678888999889889999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCh---hhHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhhcC
Q 000143 1977 SILEVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDD---QTSDTALDGLKQILSVRT 2033 (2058)
Q Consensus 1977 ~d~~VR~~Aa~a~~~l~~~~g~---~~~~~ilp~Ll~~L~~~---~~~~~al~aL~~i~~~~~ 2033 (2058)
++..+-.++..+++.++...|. ...++.++.+.+.+.+. ..+.+++..+..+.+...
T Consensus 660 ~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~ 722 (2341)
T KOG0891|consen 660 PSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTG 722 (2341)
T ss_pred cchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccc
Confidence 9999999999999999998883 24567777777777653 357889999988887653
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00083 Score=75.12 Aligned_cols=112 Identities=25% Similarity=0.328 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCC
Q 000143 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977 (2058)
Q Consensus 1898 ~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~ 1977 (2058)
++.+|..+..++|+++...+ ..+...+|.+...+.|+++.+|..+...+..++..- ...+-+.++..+..++.|+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~-~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d----~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP-NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED----MIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC----ceeehhhhhHHHHHHHcCC
Confidence 46799999999999998864 566788899999999999999999999999888542 1123356667777888999
Q ss_pred CHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCC
Q 000143 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED 2014 (2058)
Q Consensus 1978 d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~ 2014 (2058)
|++||..|...|..+....++..+...+|.++..|.+
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN 112 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 9999999999999999876666778888888888875
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.024 Score=72.82 Aligned_cols=196 Identities=15% Similarity=0.111 Sum_probs=141.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc---ccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413 (2058)
Q Consensus 1337 ~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~---~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~ 1413 (2058)
.-+..+++.+..+.|+.....|..-|..++.-...+ .++...++|.|...++++.+...--.|+.|+.++++.+++.
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 356677777777766777777777776665422222 22333688999999999989999999999999999999875
Q ss_pred chhhHH-HHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh
Q 000143 1414 FEPYVI-QMLPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP 1490 (2058)
Q Consensus 1414 ~~p~l~-~llp~Ll~~l-~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p 1490 (2058)
..-.+. ..+|.++..+ .-+--+|.+.+.+++..|.+..+...+ ..-+...+.+++==.-..++.|+....+++...+
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 544443 3778777544 345567899999999999887776554 2334444455432233455667777777777666
Q ss_pred hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1491 ~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
.+-..++-+.+|.|...|+..+.++-+.+|-|+.++++.+.+
T Consensus 327 sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 327 SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 555566778899999999988889999999999999987763
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0023 Score=77.21 Aligned_cols=155 Identities=21% Similarity=0.322 Sum_probs=122.5
Q ss_pred hhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHHHh
Q 000143 1839 RDKRNEVLAALYMVRSD-VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAG-RALGELVRKL 1916 (2058)
Q Consensus 1839 ~~~~~~vL~~L~~~~~D-~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~-~~Lg~L~~~l 1916 (2058)
+++|+++|..++..+.| .+...|.-|+.++..++.+-+..+.+.....+..++..-.|+..++-..|. .|+..+....
T Consensus 324 eq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~ 403 (516)
T KOG2956|consen 324 EQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHL 403 (516)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhC
Confidence 35677888888888888 778889999999999999999888888887777777777777665555555 4555555555
Q ss_pred CcchhhchHHHHhhhcCCCChhHHHHHHH-HHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000143 1917 GERVLPSIIPILSRGLKDPSASRRQGVCI-GLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2058)
Q Consensus 1917 g~~~l~~llp~L~~~l~d~~~~vR~~a~~-aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~ 1995 (2058)
+......+-|.+.. . + +-|..+|. .+.++++..+.+.+.+.++.+.|.+.++....+..||..|.+|+-.+...
T Consensus 404 P~~~I~~i~~~Ilt---~-D-~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 404 PLQCIVNISPLILT---A-D-EPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred chhHHHHHhhHHhc---C-c-chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 55555566666554 2 2 23444444 89999999999999999999999999999999999999999999999999
Q ss_pred hCh
Q 000143 1996 AGM 1998 (2058)
Q Consensus 1996 ~g~ 1998 (2058)
+|.
T Consensus 479 vG~ 481 (516)
T KOG2956|consen 479 VGM 481 (516)
T ss_pred HhH
Confidence 984
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0081 Score=72.94 Aligned_cols=191 Identities=19% Similarity=0.184 Sum_probs=138.6
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhh--ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC-----c
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYC--APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-----N 1532 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~--~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~-----~ 1532 (2058)
+...+..+.++.-..|.+++..+..+... .++.+..+...++..+.+.++-...+-+..|+++++-++-.++ +
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 33445556667778888888877776643 4566777778899999999987777777788898988887765 2
Q ss_pred hhHHhHHHHHHhccCCCChh--HH-HHHHHHHhccccccCChhhHhhHHHHHHHh-----hc-C---------CCHHHHH
Q 000143 1533 PEIASLVPTLLMGLTDPNDH--TK-YSLDILLQTTFVNTVDAPSLALLVPIVHRG-----LR-E---------RSAETKK 1594 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~--vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~-----L~-d---------~s~~vr~ 1594 (2058)
..+..+.|.|.+.+.|.... .| .|+.+|+-..|+...+......++..+... .+ + +++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 34688999999999988653 45 567777766676655544444333443311 11 1 2356888
Q ss_pred HHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhc
Q 000143 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651 (2058)
Q Consensus 1595 ~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg 1651 (2058)
.|...++-+...+ +...+..++...+|.|..+|..++.+||.+|.++|+.+.+...
T Consensus 205 aAL~aW~lLlt~~-~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTL-PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 8999999888764 3344667778889999999999999999999999999988665
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00091 Score=69.36 Aligned_cols=108 Identities=22% Similarity=0.221 Sum_probs=89.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hhHH-hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhh
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGVK-LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~v~-~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2058)
+++.+...+.|.++.+|..+..++..++...+. ..++ .++|.+.+.+.+++++++..++.+|+.++...+......
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 677888888999999999999999999865332 2233 789999999999999999999999999998765433332
Q ss_pred h-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1497 L-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1497 L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
. ..+++.+.+.+++.+..+|+.++++|..+++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 2 3589999999999999999999999998863
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.13 Score=66.34 Aligned_cols=154 Identities=12% Similarity=0.089 Sum_probs=109.5
Q ss_pred HhhhhHHHHHhhCCC-CHHHHHHHHHHHHHHHHhhccc--C--ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch
Q 000143 1617 IGLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE--N--FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~-~~~vR~~a~~aLg~l~~~lg~~--~--~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~ 1691 (2058)
++.++|.|..++++. ++++...|++|+..+++.+.+. . -...+|.|.+.|..=.--++-..+.++|..+.+.-+.
T Consensus 209 v~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~ 288 (1051)
T KOG0168|consen 209 VKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK 288 (1051)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH
Confidence 457899999999875 7899999999999999998765 2 2358898888886433344556677777776665554
Q ss_pred hHHH-HhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1692 VYFE-HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1692 ~~l~-~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
..+. .-+...+..+.--.-.++..++....++|..+..+=-.|+-..+|.|...|...+..+-+.++-++..++..+..
T Consensus 289 AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h 368 (1051)
T KOG0168|consen 289 AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH 368 (1051)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc
Confidence 4221 111112222222244567778888888888886654467778999999999998888888888888888887653
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00012 Score=64.28 Aligned_cols=55 Identities=31% Similarity=0.434 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000143 1393 AKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447 (2058)
Q Consensus 1393 ~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l 1447 (2058)
|.+|.+|+.+|+.+++..+..+.+|+.+++|.+...+.|+++.||.+|..+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999999988888889999999999999999999999999999998754
|
... |
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.98 Score=58.62 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhh
Q 000143 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498 (2058)
Q Consensus 1419 ~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~ 1498 (2058)
..+.=.+.+++...+...|+...-+++.+... .+++-.+...+..-....+...|..|+..|-.+..+..- .
T Consensus 63 te~ff~~tKlfQskd~~LRr~vYl~Ikels~i--sedviivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~------~ 134 (865)
T KOG1078|consen 63 TELFFAITKLFQSKDVSLRRMVYLAIKELSKI--SEDVIIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTML------Q 134 (865)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHhhcccc--chhhhhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchh------H
Confidence 34444566677777888888877777766321 122223334444445555666777777776666543211 1
Q ss_pred hHHHHHHHHhcCCCHHHHHHHH
Q 000143 1499 KIVPKLTEVLTDTHPKVQSAGQ 1520 (2058)
Q Consensus 1499 ~Iip~L~~~L~D~~~~VR~aA~ 1520 (2058)
.+-..+.+..-|.++.|+.+|.
T Consensus 135 ~iery~kqaivd~~~avSsaal 156 (865)
T KOG1078|consen 135 AIERYMKQAIVDKNPAVSSAAL 156 (865)
T ss_pred HHHHHHHhHeeccccccchHHH
Confidence 2222233455677777666554
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=64.66 Aligned_cols=86 Identities=28% Similarity=0.426 Sum_probs=70.2
Q ss_pred HHHHHHHc-CCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000143 1422 LPLLLVAF-SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2058)
Q Consensus 1422 lp~Ll~~l-~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2058)
+|.+++.+ +|+++.||..+..+++.+ +-...+|.+.+.+.|++|.+|..|+.+||.+.. +..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~-------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~----------~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL-------GDPEAIPALIELLKDEDPMVRRAAARALGRIGD----------PEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC-------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH----------HHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHH
Confidence 46777777 899999999999988844 224678889999999999999999999998742 467
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHH
Q 000143 1501 VPKLTEVLTD-THPKVQSAGQTALQ 1524 (2058)
Q Consensus 1501 ip~L~~~L~D-~~~~VR~aA~~aL~ 1524 (2058)
++.|.+.+.| .+..||.+|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888888866 46778999999885
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.7 Score=58.91 Aligned_cols=420 Identities=15% Similarity=0.118 Sum_probs=212.5
Q ss_pred HHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHhhhhh------hHHhHHHHHHHhcc-
Q 000143 1398 GALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQV-VAVREAAECAARAMMSQLSAQ------GVKLVLPSLLKGLE- 1468 (2058)
Q Consensus 1398 ~al~al~~L~~~lg~~~~p~l~-~llp~Ll~~l~D~~-~~VR~aA~~al~~l~~~l~~~------~v~~llp~Ll~~L~- 1468 (2058)
+....++..+.+-...+...+. ..++.++..+.+++ ..+++.+.++++.+...-+.. .-+.+++.+...+.
T Consensus 72 ~~~~llns~f~~eqd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~ 151 (678)
T KOG1293|consen 72 GFAVLLNSLFLGEQDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSI 151 (678)
T ss_pred hHHHHHHhHHhhccchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhh
Confidence 4445566666554444555554 46788999999988 899999999999998654321 12455555544443
Q ss_pred CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH--HhHHHHHHhcc
Q 000143 1469 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI--ASLVPTLLMGL 1546 (2058)
Q Consensus 1469 ~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i--~~lvp~Ll~~l 1546 (2058)
+.+...+..+. .....+.....+.--+-..+...+.-++.-.+..+|.+|..++.+-...+.|+.. ..++.. +
T Consensus 152 ~lk~~~~l~~~-~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~----L 226 (678)
T KOG1293|consen 152 ELKYISRLDVS-RAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGL----L 226 (678)
T ss_pred hhhhhhhhhhh-hhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHH----H
Confidence 22222222111 1111111111122222223333333334444788999999998874444433221 111111 1
Q ss_pred CCCChhHHHHHHHHHhccccccCChhhHhhHHH--HHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhH--
Q 000143 1547 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP--IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-- 1622 (2058)
Q Consensus 1547 ~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp--~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~-- 1622 (2058)
.|. .+.+ .+.+.+++++...|-.++.++..++.. +...+-.++.....+
T Consensus 227 ~d~--------------------------~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~-s~~~d~l~~~~~~~dmg 279 (678)
T KOG1293|consen 227 KDK--------------------------GVNIRCVVTRLLKDPDFSERLRSLECLVPYLRK-SFNYDPLPWWFIFFDMG 279 (678)
T ss_pred hcc--------------------------ccchhhhhhhhhhCCCccHHHHHHHHHHHHHhc-cccccccccceeeccCc
Confidence 111 0111 234455666666667777777777663 211121111111111
Q ss_pred -------HHHHhhCCCCHHHHHHHHHHHHH---HHHhhcc-cCccchHHHHHhhccc-----CCChHHHhhHHHH---HH
Q 000143 1623 -------EVKKVLVDPIPEVRSVAARAIGS---LIRGMGE-ENFPDLVSWLLDALKS-----DNSNVERSGAAQG---LS 1683 (2058)
Q Consensus 1623 -------~L~~~l~d~~~~vR~~a~~aLg~---l~~~lg~-~~~~~llp~L~~~L~~-----d~~~~~R~~aa~~---L~ 1683 (2058)
.......||.+..-..+..-+.. ++..+.. +|-....|...+.+.. ......|.-++.. +.
T Consensus 280 d~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~ 359 (678)
T KOG1293|consen 280 DSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILN 359 (678)
T ss_pred hHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhh
Confidence 11223445554432222222222 2222221 1222223333232221 0111122222111 11
Q ss_pred HHHHHhchh---HHH--HhhHHHHHhhccCChhHHHHHHHHHHHhHHHhc---hhHHHhHHHHHHHHHHhccCCCHHHHH
Q 000143 1684 EVLAALGTV---YFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG---VQFQNYLQQVLPAILDGLADENESVRD 1755 (2058)
Q Consensus 1684 ~i~~~~g~~---~l~--~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g---~~f~pyl~~ilp~Ll~~L~d~~~~VR~ 1755 (2058)
..+...|.. ++. .++..+.......+..++.+++.++-.++.... .. +--..++.++++.+.|++..|..
T Consensus 360 ~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~ 437 (678)
T KOG1293|consen 360 HLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMG 437 (678)
T ss_pred hhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHH
Confidence 112222211 111 122222222223467788888888877666432 22 23356888899999999999999
Q ss_pred HHHHHHHHHHHHhccc---ch-hchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHH
Q 000143 1756 AALGAGHVLVEHYATT---SL-PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2058)
Q Consensus 1756 ~a~~al~~lv~~~~~~---~l-~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~ 1831 (2058)
.++.++..++-.|+.- -+ ...+..+.+...+.+..+|..++..+.++.|.. ++. ...
T Consensus 438 ~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~--------------de~-----~k~ 498 (678)
T KOG1293|consen 438 ITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC--------------DEE-----EKF 498 (678)
T ss_pred HHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc--------------hHH-----HHH
Confidence 9999999998887643 12 125677888888999999999999999987531 100 000
Q ss_pred HHHHHhChhhHHHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHhhChhh
Q 000143 1832 AIIEVLGRDKRNEVLAA-LYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878 (2058)
Q Consensus 1832 ~l~~~Lg~~~~~~vL~~-L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~ 1878 (2058)
. ...++-.. +....+|+++.|.+.+..++..+.-+....
T Consensus 499 ~--------~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 499 Q--------LLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred H--------HHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 1 11122222 223368999999999999988887554433
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00088 Score=65.37 Aligned_cols=87 Identities=29% Similarity=0.483 Sum_probs=69.2
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCcc
Q 000143 1578 VPIVHRGL-RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2058)
Q Consensus 1578 lp~L~~~L-~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~ 1656 (2058)
+|.|.+.+ +++++.+|..++.+++.+.. +..+|.+...+.|+++.||..++.++|.+.. +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~-------~ 61 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD-------P 61 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH-------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------H
Confidence 35566666 88899999999888884321 2578889999999999999999999998752 4
Q ss_pred chHHHHHhhcccCCChHHHhhHHHHHH
Q 000143 1657 DLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2058)
Q Consensus 1657 ~llp~L~~~L~~d~~~~~R~~aa~~L~ 1683 (2058)
+.++.|.+.+.++.+..+|..++.+||
T Consensus 62 ~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 62 EAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 688889898888777777888888875
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=1.3 Score=58.02 Aligned_cols=144 Identities=20% Similarity=0.276 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCCh
Q 000143 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937 (2058)
Q Consensus 1858 ~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~ 1937 (2058)
..+|..+.-+++.++-..++-.+.++|.+...+- .+....+|...+-++|++|..+.. .....+|.+...|.|+++
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe---~~~~~aiRnNiV~am~D~C~~YTa-m~d~YiP~I~~~L~Dp~~ 1020 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELE---YNTAHAIRNNIVLAMGDICSSYTA-MTDRYIPMIAASLCDPSV 1020 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---hhhHHHHhcceeeeehhhHHHHHH-HHHHhhHHHHHHhcCchH
Confidence 4678888888888877666666666666655542 345677888888899999876431 246788999999999999
Q ss_pred hHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChh-hHHHHHHHHH
Q 000143 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEIVPTLL 2009 (2058)
Q Consensus 1938 ~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~-~~~~ilp~Ll 2009 (2058)
-+|..+.+-|..++..- +-.|-..++=-+.-.+-|.++++|.-|-..|+.+.+.-.+. ....++.+++
T Consensus 1021 iVRrqt~ilL~rLLq~~----~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P~~f~~~FVe~i~ 1089 (1529)
T KOG0413|consen 1021 IVRRQTIILLARLLQFG----IVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEPNFFPLNFVEYII 1089 (1529)
T ss_pred HHHHHHHHHHHHHHhhh----hhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 99988888788777431 22333444444445667999999999999999998754432 2334455444
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.013 Score=65.46 Aligned_cols=99 Identities=18% Similarity=0.162 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCCh
Q 000143 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSA 1937 (2058)
Q Consensus 1858 ~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~ 1937 (2058)
+.||..++.+++.++...|..+.+++|.+. .+|.|+++.+|..|..++..|+..---..-+.++..+...+.|+++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~----~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~ 77 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEPYLPNLY----KCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENP 77 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHhHHHHHH----HHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCH
Confidence 578999999999999888877667766655 5579999999999999999998753233456676777788899999
Q ss_pred hHHHHHHHHHHHHHHhhChhhhH
Q 000143 1938 SRRQGVCIGLSEVMASAGKSQLL 1960 (2058)
Q Consensus 1938 ~vR~~a~~aL~eii~~~~~~~l~ 1960 (2058)
++|..+...+.++.....+..+.
T Consensus 78 ~Ir~~A~~~~~e~~~~~~~~~i~ 100 (178)
T PF12717_consen 78 EIRSLARSFFSELLKKRNPNIIY 100 (178)
T ss_pred HHHHHHHHHHHHHHHhccchHHH
Confidence 99999999999998875554443
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.017 Score=65.27 Aligned_cols=216 Identities=24% Similarity=0.297 Sum_probs=114.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccC--CChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~--~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
+..+.+.+.|++........-+++++. ...-+|.+..-+.+ ..+-+|..|.++||++.. +.
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~-------~~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~ 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQ-------DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PE 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhc-------cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hh
Confidence 455566677765555555555665542 23456777776664 457788899999998762 35
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC--c-----hhHH---------hHHHHHHhccCCCChhH--H-HHHHHH
Q 000143 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK--N-----PEIA---------SLVPTLLMGLTDPNDHT--K-YSLDIL 1560 (2058)
Q Consensus 1500 Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~--~-----~~i~---------~lvp~Ll~~l~d~~~~v--r-~al~~L 1560 (2058)
+.+.+.+..+|+...||..+.-|+.++--.-. . |+.. .-+..+-..+.|++... | .++-.|
T Consensus 101 ~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~L 180 (289)
T KOG0567|consen 101 SLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYL 180 (289)
T ss_pred hHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHh
Confidence 55666666789999999988888877732110 0 1110 00111111111211110 1 011000
Q ss_pred HhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCC--CCHHHHHH
Q 000143 1561 LQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSV 1638 (2058)
Q Consensus 1561 ~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d--~~~~vR~~ 1638 (2058)
- +.. -..-+..+..++.+.|.-.|..++-++|.|-+ +.-+|.|.+.|.| .++-||..
T Consensus 181 R------n~g---~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s------------~~ai~~L~k~L~d~~E~pMVRhE 239 (289)
T KOG0567|consen 181 R------NIG---TEEAINALIDGLADDSALFRHEVAFVFGQLQS------------PAAIPSLIKVLLDETEHPMVRHE 239 (289)
T ss_pred h------ccC---cHHHHHHHHHhcccchHHHHHHHHHHHhhccc------------hhhhHHHHHHHHhhhcchHHHHH
Confidence 0 000 01123444555666666666666666665432 1234445555443 35667777
Q ss_pred HHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHH
Q 000143 1639 AARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS 1683 (2058)
Q Consensus 1639 a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~ 1683 (2058)
|++|||.++. ++.++.|.+.+. |+...+|..+..+|.
T Consensus 240 aAeALGaIa~-------e~~~~vL~e~~~-D~~~vv~esc~vald 276 (289)
T KOG0567|consen 240 AAEALGAIAD-------EDCVEVLKEYLG-DEERVVRESCEVALD 276 (289)
T ss_pred HHHHHHhhcC-------HHHHHHHHHHcC-CcHHHHHHHHHHHHH
Confidence 7777777662 345666655555 444446666555554
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0016 Score=67.43 Aligned_cols=108 Identities=19% Similarity=0.140 Sum_probs=87.5
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh-
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG- 1455 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~-~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~- 1455 (2058)
++++.+.+.+.+. ++..|..++.+++.++.........++. .++|.+++.+.|+++.|+..+..++..++...+...
T Consensus 7 ~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 7 GGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred CChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 5677888888876 7999999999999998764333334444 788999999999999999999999999987654321
Q ss_pred --H-HhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1456 --V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1456 --v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
+ ..+++.+.+.+.+.+..+|..++.+|+.++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 2 347899999999999999999999998875
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.063 Score=69.51 Aligned_cols=142 Identities=19% Similarity=0.240 Sum_probs=103.3
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHh
Q 000143 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697 (2058)
Q Consensus 1621 l~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~l 1697 (2058)
+......+.|+.+.+|..+...+..+.+.-... .-..++...++.|+++++. +-..+.+++..++... -+.+
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkdedsy-vyLnaI~gv~~Lcevy----~e~i 803 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSY-VYLNAIRGVVSLCEVY----PEDI 803 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCce-eeHHHHHHHHHHHHhc----chhh
Confidence 344555677888899999999999998843222 2346888888999966655 6677777777766553 3467
Q ss_pred hHHHHHhhccC----ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 000143 1698 LPDIIRNCSHQ----RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2058)
Q Consensus 1698 lp~Ll~~l~~~----~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~ 1767 (2058)
+|.+.+...+. ....|--+-.+++.+....|+-+..|...++..++.+..|++...|..++.+++.++..
T Consensus 804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 77777655432 12333334488999999999999999999999999999988877788887777776643
|
|
| >KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.10 E-value=1.8 Score=56.15 Aligned_cols=285 Identities=18% Similarity=0.159 Sum_probs=153.2
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccC--CChhHHHHH-HHHHHHHHHHHHhHhccCCcchH
Q 000143 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA--SDEEKYDLV-REGVVIFTGALAKHLAKDDPKVH 1299 (2058)
Q Consensus 1223 ~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~--~~~e~~~~v-R~~av~~Lg~La~~l~~~~p~i~ 1299 (2058)
+.-+|-...+|-.+=.....+.+.++.-..+.++.++.+..+... ..+.-.+.+ +.++..+.|.-+.++...-+.-+
T Consensus 404 q~~~dwey~lRPCaE~L~~~lF~~ysqllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~dF~~ 483 (978)
T KOG1993|consen 404 QSGGDWEYNLRPCAEKLYKDLFDAYSQLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILDFDK 483 (978)
T ss_pred cccccceeccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 344454555565444444555565554445555555544333211 111122233 45555666666666654322111
Q ss_pred HHHHHHHhhhCC---CCHHHHHHHHHhhHhhHhhc-ccchHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhhC--cc
Q 000143 1300 AVVDKLLDVLNT---PSEAVQRAVSSCLSPLMQSM-QDEAPTLVSR-LLDQLMKSDKYGERRGAAFGLAGVVKGFG--IS 1372 (2058)
Q Consensus 1300 ~iv~~Ll~~L~~---~~~~V~~av~~~L~~l~~~~-~~~~~~~v~~-Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g--~~ 1372 (2058)
=+...++..+.. ...-.|+.++-.++..+..- ..+....+-. +++-+..++|..+|.+++..+...+.... .+
T Consensus 484 Wl~~~llpEl~~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~d 563 (978)
T KOG1993|consen 484 WLQEALLPELANDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSED 563 (978)
T ss_pred HHHHhhCHHhhhcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChh
Confidence 122233333332 12456777887787776532 2233333333 33334445588999999999999988543 22
Q ss_pred ccchh--chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHH---HHHHHHHcCCCCHHHHHHHHHHHHHH
Q 000143 1373 SLKKY--GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM---LPLLLVAFSDQVVAVREAAECAARAM 1447 (2058)
Q Consensus 1373 ~l~~~--~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~l---lp~Ll~~l~D~~~~VR~aA~~al~~l 1447 (2058)
.+..+ .+...+...+..-..-+.|...+..++.+.+..++.+.||..++ +|.+-+.- .+++-.|.+-..++..+
T Consensus 564 sFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s-~~e~lLr~alL~~L~~l 642 (978)
T KOG1993|consen 564 SFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEES-EEEPLLRCALLATLRNL 642 (978)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh-ccCcHHHHHHHHHHHHH
Confidence 22111 12222233344333566788899999999999998888997654 45544333 36788899999999999
Q ss_pred HHhhhhhh--HHhHHHHHHHhccCC-ChHH---HHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc
Q 000143 1448 MSQLSAQG--VKLVLPSLLKGLEDK-AWRT---KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2058)
Q Consensus 1448 ~~~l~~~~--v~~llp~Ll~~L~~~-~~~~---R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~ 1509 (2058)
+..++... ...++-++++.-.|. ++.. -..+.++-+......+ .+.+.+-.++|.+...+.
T Consensus 643 V~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~-~l~p~ll~L~p~l~~~iE 709 (978)
T KOG1993|consen 643 VNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQ-KLTPELLLLFPHLLYIIE 709 (978)
T ss_pred HHHhccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHH
Confidence 98887643 233443444433332 2221 2335555555554432 233334455555555443
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.09 E-value=1.7 Score=55.68 Aligned_cols=212 Identities=17% Similarity=0.157 Sum_probs=134.3
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh--hh-HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhh
Q 000143 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--QG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2058)
Q Consensus 1416 p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~--~~-v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~ 1492 (2058)
.++.+++..++....-++..||...+..+..++..... ++ .+.+...++.++.|..+.+|..|+.+|..+-....+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 46778888999999999999999999999999874332 33 3788899999999999999999999998875322111
Q ss_pred HhhhhhhHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHH-HHHHhccccccCC
Q 000143 1493 LSQCLPKIVPKLTEV-LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL-DILLQTTFVNTVD 1570 (2058)
Q Consensus 1493 l~~~L~~Iip~L~~~-L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al-~~L~~~~f~~~~~ 1570 (2058)
-. .+...+... -+|++++||.+|...+..= ..-.|.++....|.+...|..+ +-+.. -+ ...
T Consensus 161 e~----~v~n~l~~liqnDpS~EVRRaaLsnI~vd---------nsTlp~IveRarDV~~anRrlvY~r~lp--ki-d~r 224 (892)
T KOG2025|consen 161 EC----PVVNLLKDLIQNDPSDEVRRAALSNISVD---------NSTLPCIVERARDVSGANRRLVYERCLP--KI-DLR 224 (892)
T ss_pred cc----cHHHHHHHHHhcCCcHHHHHHHHHhhccC---------cccchhHHHHhhhhhHHHHHHHHHHhhh--hh-hhh
Confidence 10 233333333 3799999999988766331 2345667777777776666322 22221 00 111
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH-HHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHH-HHH
Q 000143 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGN-MCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS-LIR 1648 (2058)
Q Consensus 1571 ~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~-L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~-l~~ 1648 (2058)
.-+...-+-.+..++.|++..+|..+...+.. .... .+ ..+++.|..+=...+.+|+..+.+|+=. +..
T Consensus 225 ~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~-~d--------gni~ElL~~ldvsnss~vavk~lealf~~v~e 295 (892)
T KOG2025|consen 225 SLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRF-SD--------GNILELLERLDVSNSSEVAVKALEALFSGVRE 295 (892)
T ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhh-cc--------ccHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 12234456678889999999998877665532 1111 11 1244444444344555777777777655 333
Q ss_pred hhcc
Q 000143 1649 GMGE 1652 (2058)
Q Consensus 1649 ~lg~ 1652 (2058)
..|.
T Consensus 296 ~v~~ 299 (892)
T KOG2025|consen 296 DVGS 299 (892)
T ss_pred Hhhh
Confidence 3443
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.82 Score=53.00 Aligned_cols=96 Identities=13% Similarity=0.174 Sum_probs=74.6
Q ss_pred CHHHHHH---HHHHHHHHHHhhhhhh-HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChh-hHhhh----hhhHHHH
Q 000143 1433 VVAVREA---AECAARAMMSQLSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQ-QLSQC----LPKIVPK 1503 (2058)
Q Consensus 1433 ~~~VR~a---A~~al~~l~~~l~~~~-v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~-~l~~~----L~~Iip~ 1503 (2058)
++.-|+. +..|+.++.+..-+.. .++++|.+-.++..++-.+|..+|..+|.+.+.+.. ..+.. -..|+|.
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilkl 132 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKL 132 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHH
Confidence 3344554 6788888876554433 488899999999999999999999999999988763 22221 2468888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1504 LTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
++.+....+..|.++|.+++++++.
T Consensus 133 ildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 133 ILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 8889988999999999999999975
|
|
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.038 Score=71.36 Aligned_cols=219 Identities=18% Similarity=0.232 Sum_probs=145.6
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchH
Q 000143 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777 (2058)
Q Consensus 1698 lp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~ll 1777 (2058)
+...+..+.|+...+|.+++..+..+.+.-...-.-....++...+..++|+++.|--++.+++..+++.|.++ ++
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~----il 804 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPED----IL 804 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchh----hH
Confidence 34445566788889999999999888874333222355679999999999999999999999888888888766 55
Q ss_pred HhHhhhcCCC------CHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChh---hHHHHHHH
Q 000143 1778 PAVEDGIFND------NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD---KRNEVLAA 1848 (2058)
Q Consensus 1778 p~L~~~l~d~------~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~---~~~~vL~~ 1848 (2058)
|.+.+...+. +.+++.. +.++.+ +..+|+- +++.+...
T Consensus 805 ~dL~e~Y~s~k~k~~~d~~lkVG--Eai~k~-------------------------------~qa~Gel~~~y~~~Li~t 851 (982)
T KOG4653|consen 805 PDLSEEYLSEKKKLQTDYRLKVG--EAILKV-------------------------------AQALGELVFKYKAVLINT 851 (982)
T ss_pred HHHHHHHHhcccCCCccceehHH--HHHHHH-------------------------------HHHhccHHHHHHHHHHHH
Confidence 5554422111 1122211 222222 3334432 34445555
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCcchhh-----
Q 000143 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLP----- 1922 (2058)
Q Consensus 1849 L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~-L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~----- 1922 (2058)
++.+..|++..-|..++..++.++..+.....+++..++..++.. ..|...-+|.+|+..+.++....|.+.+|
T Consensus 852 fl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~ 931 (982)
T KOG4653|consen 852 FLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLL 931 (982)
T ss_pred HHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 555666888889999999999998766555556666666655543 45778899999999999999998876544
Q ss_pred --chHHHHhhhcC-CCChhHHHHHHHHHHHHHHh
Q 000143 1923 --SIIPILSRGLK-DPSASRRQGVCIGLSEVMAS 1953 (2058)
Q Consensus 1923 --~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~ 1953 (2058)
+....+..... +++...|..+|.++.++-..
T Consensus 932 l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a~ 965 (982)
T KOG4653|consen 932 LIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQAA 965 (982)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 22233333333 34455788888877765443
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.028 Score=68.28 Aligned_cols=186 Identities=25% Similarity=0.217 Sum_probs=131.9
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhc--c---cCccch
Q 000143 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG--E---ENFPDL 1658 (2058)
Q Consensus 1584 ~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg--~---~~~~~l 1658 (2058)
.+.+++..+|..+...+-.+...---++.+..+...+++.+...+.....+-+..|+++++.++-.+| + +.+..+
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~ 130 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEEL 130 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Confidence 34566678888877766655432112234445566788888888887776777789999999998877 3 267889
Q ss_pred HHHHHhhcccCC-ChHHHhhHHHHHHHHHHHhchh--HHH---HhhHHHHHhh--c----------cCChhHHHHHHHHH
Q 000143 1659 VSWLLDALKSDN-SNVERSGAAQGLSEVLAALGTV--YFE---HILPDIIRNC--S----------HQRASVRDGYLTLF 1720 (2058)
Q Consensus 1659 lp~L~~~L~~d~-~~~~R~~aa~~L~~i~~~~g~~--~l~---~llp~Ll~~l--~----------~~~~~vR~~al~~l 1720 (2058)
.|.|...+.+.. ....|..++.+|+-+.-..|.+ ... +.|..++... + .+++.+..+++.++
T Consensus 131 ~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW 210 (309)
T PF05004_consen 131 KPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAW 210 (309)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHH
Confidence 999988887543 3456777888887665544433 333 3444332211 1 12467999999999
Q ss_pred HHhHHHhch-hHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc
Q 000143 1721 KYLPRSLGV-QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769 (2058)
Q Consensus 1721 ~~la~~~g~-~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~ 1769 (2058)
+.+....+. .+..++...+|.+...|..++.+||.+|-+++..+.+...
T Consensus 211 ~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 211 ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999987765 5677888899999999999999999999999988876544
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.19 Score=63.89 Aligned_cols=210 Identities=18% Similarity=0.114 Sum_probs=140.9
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1573 ~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
-++.++..+.++...++..||..+++++..+........ ...+..+...+...+.|..|.||..|..||..+-..-++
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eid--d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEID--DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccC--HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 456677778888888999999999999988765322211 234566777788888899999999999999988743333
Q ss_pred cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHH
Q 000143 1653 ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1653 ~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
+. -++...+...+++|++.++|..+...++. -...+|.++....|-+..+|..+..-+ ...+...+
T Consensus 160 ee-~~v~n~l~~liqnDpS~EVRRaaLsnI~v---------dnsTlp~IveRarDV~~anRrlvY~r~---lpkid~r~- 225 (892)
T KOG2025|consen 160 EE-CPVVNLLKDLIQNDPSDEVRRAALSNISV---------DNSTLPCIVERARDVSGANRRLVYERC---LPKIDLRS- 225 (892)
T ss_pred Cc-ccHHHHHHHHHhcCCcHHHHHHHHHhhcc---------CcccchhHHHHhhhhhHHHHHHHHHHh---hhhhhhhh-
Confidence 32 35677788888899999999987766542 135677888888888777777554322 11111111
Q ss_pred HhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCC-CCHHHHHHHHHHHHHH
Q 000143 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFN-DNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1733 pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d-~~~~vR~sav~ll~~L 1802 (2058)
--..+-+-.+-.++.|.+..|+.++.+++..=+-.+.... ++++.+.++- .+.+++..+++.+-..
T Consensus 226 lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgn----i~ElL~~ldvsnss~vavk~lealf~~ 292 (892)
T KOG2025|consen 226 LSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGN----ILELLERLDVSNSSEVAVKALEALFSG 292 (892)
T ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhcccc----HHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1233556677789999999999998888765443333321 3344444433 3447777777766553
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.15 Score=58.67 Aligned_cols=251 Identities=15% Similarity=0.151 Sum_probs=147.4
Q ss_pred HHHHHHHhHHHh-chhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccch--------hchHHhHhhhcCC
Q 000143 1716 YLTLFKYLPRSL-GVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSL--------PLLLPAVEDGIFN 1786 (2058)
Q Consensus 1716 al~~l~~la~~~-g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l--------~~llp~L~~~l~d 1786 (2058)
++.++..+.+.. |.+ ..+..+|-+..+|..++..|+.-+++.+..+++.....++ ..++|.+..++..
T Consensus 63 cVscLERLfkakegah---lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg 139 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAH---LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG 139 (524)
T ss_pred HHHHHHHHHhhccchh---hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC
Confidence 566777666654 333 3456788899999999999999999999988887764432 2377888888888
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHH-HHHHHHHHhhcCCCHHHHHHHH
Q 000143 1787 DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAAL 1865 (2058)
Q Consensus 1787 ~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~-~vL~~L~~~~~D~~~~VR~aA~ 1865 (2058)
++..|..++++.+..+..-- . .+...+..+..| -.+..+.. ..+..+|.-.+
T Consensus 140 eddeVAkAAiesikrialfp---------------------a---aleaiFeSellDdlhlrnlaa---kcndiaRvRVl 192 (524)
T KOG4413|consen 140 EDDEVAKAAIESIKRIALFP---------------------A---ALEAIFESELLDDLHLRNLAA---KCNDIARVRVL 192 (524)
T ss_pred CcHHHHHHHHHHHHHHHhcH---------------------H---HHHHhcccccCChHHHhHHHh---hhhhHHHHHHH
Confidence 88888888888887763100 0 000011111110 01111111 11223444444
Q ss_pred HHHHHHHhhChhhHHHh-HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCc-chhh--chHHHHhhhcC--CCChh
Q 000143 1866 HVWKTIVANTPKTLKEI-MPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGE-RVLP--SIIPILSRGLK--DPSAS 1938 (2058)
Q Consensus 1866 ~~l~~lv~~~~~~l~~~-l~~L~~~l~~~L~~-~~~~~R~~A~~~Lg~L~~~lg~-~~l~--~llp~L~~~l~--d~~~~ 1938 (2058)
..+-.+.+..|....+. -..++..+...+.. .+.-++..+++...+++..-.. .+++ .++..+-+.+. |.+|-
T Consensus 193 eLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPf 272 (524)
T KOG4413|consen 193 ELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPF 272 (524)
T ss_pred HHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcH
Confidence 55545544444333222 12455556555655 6677888888888888876543 3433 34444444332 44555
Q ss_pred HHHHHHHHHHHHHHh-----hChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000143 1939 RRQGVCIGLSEVMAS-----AGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1939 vR~~a~~aL~eii~~-----~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
.+..+..+++.++.. .++++.-.-+...+....+.+...|++..++|..++|.+..+.
T Consensus 273 ekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnt 335 (524)
T KOG4413|consen 273 EKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNT 335 (524)
T ss_pred HHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCc
Confidence 555444555544432 2333333334555566666777889999999999999876443
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.97 E-value=3.9 Score=57.88 Aligned_cols=360 Identities=15% Similarity=0.121 Sum_probs=181.9
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHh-CCC--chHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhh--hhCCCC
Q 000143 1138 ALSHSNYNVRLAAAEALATALDE-YPD--SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD--VLRTKD 1212 (2058)
Q Consensus 1138 ~l~~~~~~vR~aaa~aLa~~~~~-~~~--~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~--~~~~~~ 1212 (2058)
.|.|+|.+||--.+-|++.+..- .|+ .-...+..++..+........+..++...-|-.....+..... .+.-.+
T Consensus 58 ~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 58 LLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred HhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 67899999999999999999864 344 2223555555544332222122222333333333334433321 122222
Q ss_pred ----hHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHH-HHHHhcccCCChhHHHHHHHHHHHHHHHH
Q 000143 1213 ----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPI-FENYLNKKASDEEKYDLVREGVVIFTGAL 1287 (2058)
Q Consensus 1213 ----~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~-l~~~L~~~~~~~e~~~~vR~~av~~Lg~L 1287 (2058)
+..+++.+. ..+.++.+.--..+++....++.....- -.+++.+ |.+++.. ..+. ...-+..+-.++-.+
T Consensus 138 ~~e~~~~~f~~f~-d~~~~~~~~~v~~~~~i~~~li~e~d~v-~~e~L~~ll~~lv~~-~~~~--~~~a~~la~~li~~~ 212 (1266)
T KOG1525|consen 138 CQELVHELFRTFF-DLARKGHPKKVFNMLDIAIMLITEEDTV-QSELLDVLLENLVKP-GRDT--IKEADKLASDLIERC 212 (1266)
T ss_pred hHHHHHHHHHHHH-HHHhccccHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHhccC-CCCc--cHHHHHHHHHHHHHh
Confidence 233444332 2333444433333777777776654322 2345554 5555543 2221 113344555666666
Q ss_pred HhHhccCCcchHHHHHHHHhhhCC---CCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1288 AKHLAKDDPKVHAVVDKLLDVLNT---PSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAG 1364 (2058)
Q Consensus 1288 a~~l~~~~p~i~~iv~~Ll~~L~~---~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~ 1364 (2058)
+.++.+. +. ..+...+.- .-..++...-+.+..+.+...+.+-..+|.+...|..+ +..+|..|...++.
T Consensus 213 a~~~~~~---i~---~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se-~~~~Rl~a~~lvg~ 285 (1266)
T KOG1525|consen 213 ADNLEDT---IA---NFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSE-QEEVRLKAVKLVGR 285 (1266)
T ss_pred hhhhchh---HH---HHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHH
Confidence 6555422 22 222222211 11112222233333443333334456677777777655 57899999999999
Q ss_pred HHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHH-HHHHHcCCCCHHHHHHHHH
Q 000143 1365 VVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP-LLLVAFSDQVVAVREAAEC 1442 (2058)
Q Consensus 1365 l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp-~Ll~~l~D~~~~VR~aA~~ 1442 (2058)
+....+..... ..++.......+.|. +..+|.+++.....+.-. .|....-.. .+.-...|.++.+|....-
T Consensus 286 ~~~~~~~~l~~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~-----~~~~~~~~~~~~~l~~~~~D~~~rir~~v 359 (1266)
T KOG1525|consen 286 MFSDKDSQLSETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLN-----NPSIAKASTILLALRERDLDEDVRVRTQV 359 (1266)
T ss_pred HHhcchhhhcccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhc-----CchhhhHHHHHHHHHhhcCChhhhheeeE
Confidence 88755433222 123444444455555 788998887755444332 222222121 2222334555555543221
Q ss_pred HHHHH--HHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh-------ChhhHhhhhhhHHHHHHHHhcCCCH
Q 000143 1443 AARAM--MSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-------APQQLSQCLPKIVPKLTEVLTDTHP 1513 (2058)
Q Consensus 1443 al~~l--~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~-------~p~~l~~~L~~Iip~L~~~L~D~~~ 1513 (2058)
.+..+ +... -..+..++..+.+++.|+.|++|..|+.-|..+... ..+...+.+..|-..++.++.+.+-
T Consensus 360 ~i~~~~v~~~~-l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~ 438 (1266)
T KOG1525|consen 360 VIVACDVMKFK-LVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDL 438 (1266)
T ss_pred EEEEeehhHhh-hhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhHHhhHhhccc
Confidence 11111 1100 011222677778889999999999999999988863 1233444445555566666665544
Q ss_pred HHH
Q 000143 1514 KVQ 1516 (2058)
Q Consensus 1514 ~VR 1516 (2058)
.-|
T Consensus 439 ~~r 441 (1266)
T KOG1525|consen 439 DDR 441 (1266)
T ss_pred cHH
Confidence 444
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.041 Score=62.31 Aligned_cols=224 Identities=20% Similarity=0.225 Sum_probs=132.0
Q ss_pred HHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhcCchhHHhHHHH
Q 000143 1464 LKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD--THPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541 (2058)
Q Consensus 1464 l~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D--~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~ 1541 (2058)
.+.+.+++---+....-.||.+.. ..-+|.+...+.| ..|.||..|..||++++. ...++.
T Consensus 42 ~ka~~d~s~llkhe~ay~LgQ~~~----------~~Av~~l~~vl~desq~pmvRhEAaealga~~~-------~~~~~~ 104 (289)
T KOG0567|consen 42 TKAFIDDSALLKHELAYVLGQMQD----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-------PESLEI 104 (289)
T ss_pred HHhcccchhhhccchhhhhhhhcc----------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-------hhhHHH
Confidence 334444444444555556665542 3567788888876 469999999999999983 245666
Q ss_pred HHhccCCCChhHHH-HHHHHHhccccccCCh-----------hhHh-h--HHHHHHHhhcCCCH--HHHHHHHHHHHHHH
Q 000143 1542 LLMGLTDPNDHTKY-SLDILLQTTFVNTVDA-----------PSLA-L--LVPIVHRGLRERSA--ETKKKAAQIVGNMC 1604 (2058)
Q Consensus 1542 Ll~~l~d~~~~vr~-al~~L~~~~f~~~~~~-----------~~l~-~--llp~L~~~L~d~s~--~vr~~A~~~l~~L~ 1604 (2058)
+-+..+||...+++ |.-++.+..+.+..+. |... . -++-+...+.|.+. --|+.|.-.+-+++
T Consensus 105 l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g 184 (289)
T KOG0567|consen 105 LTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG 184 (289)
T ss_pred HHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC
Confidence 66777899888775 4334433222221111 1100 1 12223333333211 11222221222111
Q ss_pred hhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccC-CChHHHhhHHHHHH
Q 000143 1605 SLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD-NSNVERSGAAQGLS 1683 (2058)
Q Consensus 1605 ~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d-~~~~~R~~aa~~L~ 1683 (2058)
. +.-+..+...+.+++.-.|..++-+||.+-. +.-+|.|.+.|... +.+-+|..++.+||
T Consensus 185 ~------------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s-------~~ai~~L~k~L~d~~E~pMVRhEaAeALG 245 (289)
T KOG0567|consen 185 T------------EEAINALIDGLADDSALFRHEVAFVFGQLQS-------PAAIPSLIKVLLDETEHPMVRHEAAEALG 245 (289)
T ss_pred c------------HHHHHHHHHhcccchHHHHHHHHHHHhhccc-------hhhhHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 0 1235556666777777888888888887753 45678887777643 34568999999998
Q ss_pred HHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchh
Q 000143 1684 EVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2058)
Q Consensus 1684 ~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~ 1730 (2058)
.++. ++.++.|.+.+.|+.+-||+.+..+|.-.--.-|..
T Consensus 246 aIa~-------e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~ 285 (289)
T KOG0567|consen 246 AIAD-------EDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKE 285 (289)
T ss_pred hhcC-------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 7653 356667778888999999999887775443333333
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.057 Score=63.40 Aligned_cols=190 Identities=19% Similarity=0.201 Sum_probs=124.2
Q ss_pred HHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhh-HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch-hH
Q 000143 1459 VLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EI 1535 (2058)
Q Consensus 1459 llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~-l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i 1535 (2058)
-+..++..|+ ..++..+..++.++|..+.....+ +... -..++.+...++++++.||..|++++..++....+. .+
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~I 91 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQI 91 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHH
Confidence 3455666666 456778888888888876543222 2222 267788899999999999999999999998776653 34
Q ss_pred HhHHHHHHhc-cCCC-ChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCc
Q 000143 1536 ASLVPTLLMG-LTDP-NDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2058)
Q Consensus 1536 ~~lvp~Ll~~-l~d~-~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~ 1612 (2058)
+..++.+++. ..++ +..++ .++..|...+..... ...+...+|.+.+.+...+..+|.++..++.+|+. .+..
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~---np~~ 167 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE---NPDM 167 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc---CHHH
Confidence 5556665553 3333 33443 677777763222211 23345567777888888888999999999999876 2222
Q ss_pred hhhhH-hhhhHHHHHhhCCC-CHHHHHHHHHHHHHHHHhhccc
Q 000143 1613 MIPYI-GLLLPEVKKVLVDP-IPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1613 l~pyl-~~ll~~L~~~l~d~-~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
....+ .+.++.+..+++.. ..++...+...+..+.+.++.+
T Consensus 168 ~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 168 TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 22222 25667777777754 5566667777777777766554
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.03 Score=69.61 Aligned_cols=231 Identities=18% Similarity=0.233 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHhhCc---cchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHh--c---cCCcchHHHHH
Q 000143 1232 VRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHL--A---KDDPKVHAVVD 1303 (2058)
Q Consensus 1232 VR~~al~a~~~~i~~~g~---~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l--~---~~~p~i~~iv~ 1303 (2058)
|+..+++........++. .+++.++..+++.|.. .+....+|.+-..++.+|..+++.. . ...|.++.++.
T Consensus 112 vK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~-~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Iie 190 (370)
T PF08506_consen 112 VKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTK-ISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQIIE 190 (370)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC---SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHHH
Confidence 333444444444444332 2345566666777766 3334455677778888888877521 1 11233344433
Q ss_pred HH-HhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHH
Q 000143 1304 KL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382 (2058)
Q Consensus 1304 ~L-l~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~ 1382 (2058)
.+ +..+.=..+++ +...++-.++++.=++ .++....|++|...+..+.+..+..... .++.+
T Consensus 191 ~VI~Pnl~~~e~D~------------ElfEddP~EYIrrd~e---~sd~~TrR~AA~dfl~~L~~~~~~~v~~--i~~~~ 253 (370)
T PF08506_consen 191 KVIFPNLCLREEDE------------ELFEDDPEEYIRRDLE---GSDSDTRRRAACDFLRSLCKKFEKQVTS--ILMQY 253 (370)
T ss_dssp HTHHHHHS--HHHH------------HHHHHSHHHHHHHHSC---SS---SHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HhccCccCCCHHHH------------HHHccCHHHHHHhhcc---ccccCCcHHHHHHHHHHHHHHHhHHHHH--HHHHH
Confidence 22 11221111111 0112233466665333 3344566778888888888776543322 23344
Q ss_pred HHHHHh-----CCCCHHHHHHHHHHHHHHHHHhc-------c-----cchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHH
Q 000143 1383 LREGLA-----DRNSAKRREGALLAFECLCEKLG-------R-----LFEPYVI-QMLPLLLVAFSDQVVAVREAAECAA 1444 (2058)
Q Consensus 1383 L~~~l~-----~~~~~~~R~~al~al~~L~~~lg-------~-----~~~p~l~-~llp~Ll~~l~D~~~~VR~aA~~al 1444 (2058)
+.+.++ ...+|+.+++|+..++.++.... . .+..++. .++|-+. .-.+..|.+|..|++.+
T Consensus 254 i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~ 332 (370)
T PF08506_consen 254 IQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFL 332 (370)
T ss_dssp HHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHH
Confidence 444443 34589999999999999986431 1 2344444 4566665 44456788999999999
Q ss_pred HHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHH
Q 000143 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2058)
Q Consensus 1445 ~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~ 1481 (2058)
..+-..++++.+..++|.+...|.+++.-++.-|+.+
T Consensus 333 ~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 333 YTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
Confidence 9998888888889999999999999988887666544
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.033 Score=68.10 Aligned_cols=283 Identities=17% Similarity=0.209 Sum_probs=163.6
Q ss_pred HHHHHHHHhhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHH
Q 000143 1196 GIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2058)
Q Consensus 1196 ~~~~al~~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~ 1275 (2058)
++..+++-+-..++.++.+.+...+. --+|....+-.-.+-.++-++..+. . -.++...+.+.+.. + .. .
T Consensus 392 GalyalGLI~Agfgr~~TeYL~e~~~--~teDe~~~~l~yG~~LGiGL~~MgS-a-n~eiye~lKe~l~n-D---~a--~ 461 (926)
T COG5116 392 GALYALGLIKAGFGREDTEYLLEYFL--DTEDELTPELAYGVCLGIGLINMGS-A-NREIYEKLKELLKN-D---RA--L 461 (926)
T ss_pred ceeeeehhhccCcCcccHHHHHHHhC--cccccccHHHHHHHHhhhcchhccc-c-cHHHHHHHHHHHhc-c---hh--h
Confidence 55667777655676666666554431 1223322232222223333333221 1 12444445444432 1 11 2
Q ss_pred HHHHHHHHHHHHHhHhccCCcchHHHHHHHHhh-hCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHH
Q 000143 1276 VREGVVIFTGALAKHLAKDDPKVHAVVDKLLDV-LNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 1354 (2058)
Q Consensus 1276 vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~-L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~v 1354 (2058)
.-++++..+|-+. +.... .+.+..|..- -.+..+.+.+...-.+.-++.. -++....+++.|..+.++-.
T Consensus 462 ~geAa~~gMGl~m--Lgt~s---~eai~dm~tya~ETqhe~i~Rglgig~aLi~yg----rqe~add~I~ell~d~ds~l 532 (926)
T COG5116 462 LGEAAVYGMGLLM--LGTWS---VEAIEDMRTYAGETQHERIKRGLGIGFALILYG----RQEMADDYINELLYDKDSIL 532 (926)
T ss_pred hhhhhhhccceee--ecCCC---HHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhh----hHHHHHHHHHHHhcCchHHh
Confidence 3355555555543 11111 2222333222 1233344444433322222221 13455567777777888889
Q ss_pred HHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCC-CC
Q 000143 1355 RRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD-QV 1433 (2058)
Q Consensus 1355 R~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D-~~ 1433 (2058)
|.+.+.+++....+-|.. .++..+....-++.|..+|.+|+.|+|.+|-.-. ..++..++.+.+ .+
T Consensus 533 Ry~G~fs~alAy~GTgn~-----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN 599 (926)
T COG5116 533 RYNGVFSLALAYVGTGNL-----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHN 599 (926)
T ss_pred hhccHHHHHHHHhcCCcc-----hhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccc
Confidence 998888887766665532 4566666664445588999999999988763211 244455555555 47
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCH
Q 000143 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513 (2058)
Q Consensus 1434 ~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~ 1513 (2058)
+.||....-+++......+. +..+..+-..+.|.+-.+|++|+-+++.+.-.+.+++.+....|...+..+..|.|.
T Consensus 600 ~hVR~g~AvaLGiacag~G~---~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe 676 (926)
T COG5116 600 FHVRAGVAVALGIACAGTGD---KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE 676 (926)
T ss_pred hhhhhhhHHHhhhhhcCCcc---HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence 89999888888876544332 222333333456788899999999999999989899999999999999999988764
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.036 Score=67.84 Aligned_cols=268 Identities=16% Similarity=0.203 Sum_probs=155.0
Q ss_pred hhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhH
Q 000143 1246 KHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLS 1325 (2058)
Q Consensus 1246 ~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~ 1325 (2058)
.+|.+..+.|.. ..+.. .++.-+.+...++-.+|-++ +.+.+ .++.+.+-+.+...+...-+++.-..+
T Consensus 403 gfgr~~TeYL~e---~~~~t---eDe~~~~l~yG~~LGiGL~~--MgSan---~eiye~lKe~l~nD~a~~geAa~~gMG 471 (926)
T COG5116 403 GFGREDTEYLLE---YFLDT---EDELTPELAYGVCLGIGLIN--MGSAN---REIYEKLKELLKNDRALLGEAAVYGMG 471 (926)
T ss_pred CcCcccHHHHHH---HhCcc---cccccHHHHHHHHhhhcchh--ccccc---HHHHHHHHHHHhcchhhhhhhhhhccc
Confidence 456555555552 22221 12222345555554444433 33333 456666666665443222222221111
Q ss_pred hhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000143 1326 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFEC 1405 (2058)
Q Consensus 1326 ~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~ 1405 (2058)
-+ .++....+.+..+++--.+.+...+.++-..+++.+.-+. .. ..-.++.+.+.++ ++..|-+.+++++.
T Consensus 472 l~--mLgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~ygr--qe----~add~I~ell~d~-ds~lRy~G~fs~al 542 (926)
T COG5116 472 LL--MLGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYGR--QE----MADDYINELLYDK-DSILRYNGVFSLAL 542 (926)
T ss_pred ee--eecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhhh--HH----HHHHHHHHHhcCc-hHHhhhccHHHHHH
Confidence 11 1233345677777765444444566667666666665432 11 1223445555555 88899888877654
Q ss_pred HHHHhcccchhhHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhcc-CCChHHHHHHHHHHH
Q 000143 1406 LCEKLGRLFEPYVIQMLPLLLVA-FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLLG 1483 (2058)
Q Consensus 1406 L~~~lg~~~~p~l~~llp~Ll~~-l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~-~~~~~~R~~a~~~Lg 1483 (2058)
---+.|. . .++..++.. .+|.++.||++|.-+++.+.-.- ...++..++.|. +.+..+|.+..-+||
T Consensus 543 Ay~GTgn--~----~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D-----~~~lv~tvelLs~shN~hVR~g~AvaLG 611 (926)
T COG5116 543 AYVGTGN--L----GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD-----RDLLVGTVELLSESHNFHVRAGVAVALG 611 (926)
T ss_pred HHhcCCc--c----hhHhhhheeecccCchHHHHHHHHheeeeEecC-----cchhhHHHHHhhhccchhhhhhhHHHhh
Confidence 4433332 1 234444443 78999999999999998764221 234555556665 458999999999999
Q ss_pred HHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHhccCCCC
Q 000143 1484 AMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTDPN 1550 (2058)
Q Consensus 1484 ~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~~i~~lvp~Ll~~l~d~~ 1550 (2058)
-.+.+.+.+.. +..|-.+..|++.-||++|+-+++-+-.... +|.+..|...+.+.+.|..
T Consensus 612 iacag~G~~~a------~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Kh 675 (926)
T COG5116 612 IACAGTGDKVA------TDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKH 675 (926)
T ss_pred hhhcCCccHHH------HHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhh
Confidence 88877665432 3344556789999999999999998876544 3455666666666665543
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.023 Score=65.70 Aligned_cols=180 Identities=19% Similarity=0.224 Sum_probs=124.7
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch---h
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP---E 1534 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~---~ 1534 (2058)
..+...+..|.+++|..+..++..+..++..-++.+...+..++..+.+-++.....|-++||.+++.+.+...+. .
T Consensus 88 ~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ 167 (334)
T KOG2933|consen 88 AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQE 167 (334)
T ss_pred HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556778899999999999999999988888899999999999999999999999999999999999887653 3
Q ss_pred HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000143 1535 IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l 1613 (2058)
.+.++-.|+..-.+.+..+| .|-.+|.. ++.. ..-..+++.|...++..++.+|..++.+..+....++-+...
T Consensus 168 ld~lv~~Ll~ka~~dnrFvreda~kAL~a--MV~~---vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~ 242 (334)
T KOG2933|consen 168 LDDLVTQLLHKASQDNRFVREDAEKALVA--MVNH---VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVL 242 (334)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHH--HHhc---cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchh
Confidence 34444444444444455565 23333332 1111 123457888888888888999999887665544433322223
Q ss_pred hhhHhhhhHHHHHhhCCCCHHHHHHHHHH
Q 000143 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARA 1642 (2058)
Q Consensus 1614 ~pyl~~ll~~L~~~l~d~~~~vR~~a~~a 1642 (2058)
.+|...+.+.+.+-+.|.-+..|+.+-..
T Consensus 243 ~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 243 LQGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred hHhHHHHHHHHHhhhcccccccccchhHH
Confidence 44555666666666667766666554333
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.78 E-value=5.4 Score=56.54 Aligned_cols=320 Identities=16% Similarity=0.167 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHHhHhccCCcc----hHHHHHHHHhhh---CCC-CHH-HHH-HHHHhhHhhH---hhcccchHHHHHH
Q 000143 1275 LVREGVVIFTGALAKHLAKDDPK----VHAVVDKLLDVL---NTP-SEA-VQR-AVSSCLSPLM---QSMQDEAPTLVSR 1341 (2058)
Q Consensus 1275 ~vR~~av~~Lg~La~~l~~~~p~----i~~iv~~Ll~~L---~~~-~~~-V~~-av~~~L~~l~---~~~~~~~~~~v~~ 1341 (2058)
.||--+.-|+..+-+-+.++.|| +.+|+..++..+ .|. ++. -|+ ...+.+.... -..-++..+++..
T Consensus 65 dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~ 144 (1266)
T KOG1525|consen 65 DVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHE 144 (1266)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHH
Confidence 47777777888887777776554 566666666544 333 221 121 1111111111 0112233444444
Q ss_pred HHHHHh----cCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh
Q 000143 1342 LLDQLM----KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2058)
Q Consensus 1342 Ll~~L~----~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~ 1417 (2058)
++..+. .+....+- -...+...+-.. .+.+ ...++..+...+-.. ....+.+|...-..+.+.++...+++
T Consensus 145 ~f~~f~d~~~~~~~~~v~--~~~~i~~~li~e-~d~v-~~e~L~~ll~~lv~~-~~~~~~~a~~la~~li~~~a~~~~~~ 219 (1266)
T KOG1525|consen 145 LFRTFFDLARKGHPKKVF--NMLDIAIMLITE-EDTV-QSELLDVLLENLVKP-GRDTIKEADKLASDLIERCADNLEDT 219 (1266)
T ss_pred HHHHHHHHHhccccHHHH--HHHHHHHHHHHh-hccc-hHHHHHHHHHHhccC-CCCccHHHHHHHHHHHHHhhhhhchh
Confidence 444332 22211111 122222111111 1122 224555555444333 23334444444444555555556666
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1418 l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
+...+..-+..-...-..++..--+.+-.+. ...+..+-.++|.|...|..++-.+|..|+.++|.|...-..++....
T Consensus 220 i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~-~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~ 298 (1266)
T KOG1525|consen 220 IANFLNSCLTEYKSRQSSLKIKYHELILELW-RIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETY 298 (1266)
T ss_pred HHHHHHHHHhhccccccchhhHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccc
Confidence 5554433332211111222222222232322 223344567899999999999999999999999999877666676777
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHH---hHHHHHHhccCCCChhHHHHHHHHH-hccccccCChhh
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA---SLVPTLLMGLTDPNDHTKYSLDILL-QTTFVNTVDAPS 1573 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~---~lvp~Ll~~l~d~~~~vr~al~~L~-~~~f~~~~~~~~ 1573 (2058)
+.+....+..++|.++.||.++.+...++--. +|.+. .+.-.+.....|++..+|. ..+. .+.+. ...-..
T Consensus 299 ~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~--~~~~~~~~~~~~~l~~~~~D~~~rir~--~v~i~~~~v~-~~~l~~ 373 (1266)
T KOG1525|consen 299 DDLWSAFLGRFNDISVEVRMECVESIKQCLLN--NPSIAKASTILLALRERDLDEDVRVRT--QVVIVACDVM-KFKLVY 373 (1266)
T ss_pred hHHHHHHHHHhccCChhhhhhHHHHhHHHHhc--CchhhhHHHHHHHHHhhcCChhhhhee--eEEEEEeehh-Hhhhhh
Confidence 88999999999999999999999988887543 55442 2222333344455444431 0000 00000 000011
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000143 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2058)
Q Consensus 1574 l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~ 1605 (2058)
...++..+...+.|+-+.||..|..-+..+.+
T Consensus 374 ~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 374 IPLLLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 12256666677889999999999888877766
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.76 E-value=3.4 Score=53.87 Aligned_cols=185 Identities=19% Similarity=0.222 Sum_probs=116.9
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGRL 1413 (2058)
Q Consensus 1335 ~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~-~~~~~~~R~~al~al~~L~~~lg~~ 1413 (2058)
..+.|+.+.+...++.-...|+.|+.||..+.+.+...... .-|+.+.+.++ |-.|+..-..++..+..+
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga--~Gmk~li~vL~~D~~D~E~ik~~LdTl~il------- 90 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGA--QGMKPLIQVLQRDYMDPEIIKYALDTLLIL------- 90 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHH--cccHHHHHHHhhccCCHHHHHHHHHHHHHH-------
Confidence 56788888888888877889999999999998865221111 11333344443 222343333332222111
Q ss_pred chhhHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVA-------VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~-------VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
...|+.+. +-+...+....+..+ +..+..++..++..++.+|..+++++.++.
T Consensus 91 --------------~~~dd~~~v~dds~qsdd~g~~iae~fik~------qd~I~lll~~~e~~DF~VR~~aIqLlsall 150 (970)
T KOG0946|consen 91 --------------TSHDDSPEVMDDSTQSDDLGLWIAEQFIKN------QDNITLLLQSLEEFDFHVRLYAIQLLSALL 150 (970)
T ss_pred --------------HhcCcchhhcccchhhhHHHHHHHHHHHcC------chhHHHHHHHHHhhchhhhhHHHHHHHHHH
Confidence 11222222 222333333333221 356777888889999999999999999999
Q ss_pred hhChhhHhh---hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch----hHHhHHHHHHhccCC
Q 000143 1487 YCAPQQLSQ---CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----EIASLVPTLLMGLTD 1548 (2058)
Q Consensus 1487 ~~~p~~l~~---~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~i~~lvp~Ll~~l~d 1548 (2058)
.+.|.++.. .+|.-+..++..|.|++..+|..++--|..+....++- .+..+...|+..+..
T Consensus 151 s~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 151 SCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred hcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 999877654 45777888999999999999999999998887753321 123444555555543
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.60 E-value=3.4 Score=51.86 Aligned_cols=213 Identities=18% Similarity=0.171 Sum_probs=132.6
Q ss_pred cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh-h--hh---hHHhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1413 LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL-S--AQ---GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1413 ~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l-~--~~---~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
.|...+..++..++.+-+.+. +-+....-+.+++... + ++ -+..++..++.++++++..+|.-+++.+..+.
T Consensus 42 ~f~~~flr~vn~IL~~Kk~~s--i~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~ 119 (885)
T COG5218 42 EFSEEFLRVVNTILACKKNPS--IPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLS 119 (885)
T ss_pred hhHHHHHHHHHHhhccccCCC--cHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHH
Confidence 456666667777776655432 2222333444444411 1 12 24777888899999999999999999999998
Q ss_pred hhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhcc-CCCChhHHH-HHHHHHhcc
Q 000143 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY-SLDILLQTT 1564 (2058)
Q Consensus 1487 ~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l-~d~~~~vr~-al~~L~~~~ 1564 (2058)
.+..+.-......++..+.+.+-|..+.||..|..+|..+-+.-.|++- .+...+...+ .||+..+|. ++-.+..
T Consensus 120 d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-~~~n~l~~~vqnDPS~EVRr~allni~v-- 196 (885)
T COG5218 120 DVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-RIVNLLKDIVQNDPSDEVRRLALLNISV-- 196 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH-HHHHHHHHHHhcCcHHHHHHHHHHHeee--
Confidence 8766543334457777888888999999999999999999876666643 2233333333 588888873 4433321
Q ss_pred ccccCChhhHhhHHHHHHHhhcCCCHHHHHHHH-HHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHH
Q 000143 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAA-QIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2058)
Q Consensus 1565 f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~-~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aL 1643 (2058)
+ ....|.+.....|-+...|+..- .++..|+..-. .++.+. +. .+.-.+.|.+..|+.++..++
T Consensus 197 -----d----nsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~--lsi~kr---i~-l~ewgl~dRe~sv~~a~~d~i 261 (885)
T COG5218 197 -----D----NSTYPCILERARDVSGANRRMVYERCLPRIGDLKS--LSIDKR---IL-LMEWGLLDREFSVKGALVDAI 261 (885)
T ss_pred -----C----CCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhh--ccccce---eh-hhhhcchhhhhhHHHHHHHHH
Confidence 1 11346666666676666665532 34444433211 122222 11 444557788888998888877
Q ss_pred HH
Q 000143 1644 GS 1645 (2058)
Q Consensus 1644 g~ 1645 (2058)
..
T Consensus 262 a~ 263 (885)
T COG5218 262 AS 263 (885)
T ss_pred HH
Confidence 65
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.56 E-value=4.1 Score=52.36 Aligned_cols=319 Identities=17% Similarity=0.154 Sum_probs=169.0
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCC--ChHHHHHHHHHHHHHHhhChhhHh
Q 000143 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK--AWRTKQSSVQLLGAMAYCAPQQLS 1494 (2058)
Q Consensus 1417 ~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~--~~~~R~~a~~~Lg~la~~~p~~l~ 1494 (2058)
....++..+.+.+...++.--.-|..+++.+...--.+.+..=+| +.|.+. ..-+|+.|+.++-.+....|+...
T Consensus 108 l~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl~~ 184 (938)
T KOG1077|consen 108 LMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN 184 (938)
T ss_pred HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence 344566666666767777777778888777754433333322233 333332 234566666666667766776554
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhH
Q 000143 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1495 ~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l 1574 (2058)
+ ......+..+|+|.|-.|-.++..-+..++....+ ++..-+|.-+..+.. .++..-..+...+|.. +-.|=+
T Consensus 185 ~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~-~yk~~~~~avs~L~r---iv~~~~t~~qdYTyy~-vP~PWL 257 (938)
T KOG1077|consen 185 P--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE-SYKTCLPLAVSRLSR---IVVVVGTSLQDYTYYF-VPAPWL 257 (938)
T ss_pred h--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH-HHhhhHHHHHHHHHH---HHhhcccchhhceeec-CCChHH
Confidence 4 25677788999999999999998888888875433 333333332222110 0000000000000100 011111
Q ss_pred -hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh--hH----hhhhHHHHHh-hCCCCHHHHHHHHHHHHHH
Q 000143 1575 -ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YI----GLLLPEVKKV-LVDPIPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1575 -~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p--yl----~~ll~~L~~~-l~d~~~~vR~~a~~aLg~l 1646 (2058)
-.++..|...=..+++.+|....+++..+.....++..... +. ..+.+.+.-+ .-|+.++.-..+..+||
T Consensus 258 ~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg-- 335 (938)
T KOG1077|consen 258 QVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLG-- 335 (938)
T ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH--
Confidence 11222222222335566777666666665443222111000 00 0011111111 11444444333333333
Q ss_pred HHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHh-chhHHHHhhHHHHHhhc-cCChhHHHHHHHHHHHhH
Q 000143 1647 IRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL-GTVYFEHILPDIIRNCS-HQRASVRDGYLTLFKYLP 1724 (2058)
Q Consensus 1647 ~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~-g~~~l~~llp~Ll~~l~-~~~~~vR~~al~~l~~la 1724 (2058)
+.+. +.+...|--+...+..++..- ..+.+..-...++..++ +.+..+|+.++.++-.+|
T Consensus 336 -----------------~fls-~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mc 397 (938)
T KOG1077|consen 336 -----------------QFLS-HRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMC 397 (938)
T ss_pred -----------------HHhh-cccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHh
Confidence 3333 344556777777776665441 12234444666777777 678999999999998887
Q ss_pred HHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1725 RSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1725 ~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~ 1771 (2058)
..-. ...++.-+++.|...+..+|+...--...+.+.|+.+
T Consensus 398 D~~N------ak~IV~elLqYL~tAd~sireeivlKvAILaEKyAtD 438 (938)
T KOG1077|consen 398 DVSN------AKQIVAELLQYLETADYSIREEIVLKVAILAEKYATD 438 (938)
T ss_pred chhh------HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCC
Confidence 6433 3457777778787778889988766666677777654
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=5.6 Score=53.36 Aligned_cols=83 Identities=20% Similarity=0.187 Sum_probs=67.1
Q ss_pred hhcCCCHHHHHHHHHHHHHHHh---hChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc----hhhch
Q 000143 1852 VRSDVSLSVRQAALHVWKTIVA---NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VLPSI 1924 (2058)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~lv~---~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~----~l~~l 1924 (2058)
.+.+.+..+|-.+++++..... ..+..+-+.+.+.++.++.++.+.++-+-..|..|+..++...|+- +..++
T Consensus 811 ~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dv 890 (1014)
T KOG4524|consen 811 LLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDV 890 (1014)
T ss_pred HhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3567777888888888865543 3456677888899999999999999999999999999999998864 57788
Q ss_pred HHHHhhhcCC
Q 000143 1925 IPILSRGLKD 1934 (2058)
Q Consensus 1925 lp~L~~~l~d 1934 (2058)
+|.+...+.+
T Consensus 891 lP~l~~~~~~ 900 (1014)
T KOG4524|consen 891 LPWLKHLCQD 900 (1014)
T ss_pred HHHHHHHHHH
Confidence 9988866643
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.08 Score=62.23 Aligned_cols=192 Identities=15% Similarity=0.103 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-CccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--cc
Q 000143 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF-GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RL 1413 (2058)
Q Consensus 1337 ~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~-g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg--~~ 1413 (2058)
+.++.++..|...+++.++..+..+++..+... .-+.+...+.++.+...+.++ ++.+|+.|+.++..++.... ..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDP-NPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChhhHHH
Confidence 445666776766677888887777777654311 111222346677788888876 89999999998887765432 23
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-hhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh--
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP-- 1490 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p-- 1490 (2058)
++.|+.+++..+... .-+..++.++.++|..+.-.... +.+...+|.++..+...+-.+|..++..|..++....
T Consensus 91 Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~ 168 (254)
T PF04826_consen 91 IKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMT 168 (254)
T ss_pred HHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHH
Confidence 556666666655432 23667888888888887432211 2346678889999998899999999999999986522
Q ss_pred hhHhhhhhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhcCch
Q 000143 1491 QQLSQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNP 1533 (2058)
Q Consensus 1491 ~~l~~~L~~Iip~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~ 1533 (2058)
..+-. .+..+.++.+++.. +..+-..++.-+..+.+.++.+
T Consensus 169 ~~Ll~--~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 169 RELLS--AQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHh--ccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 11111 14455666666654 5777778888888887776643
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.44 E-value=5.7 Score=52.62 Aligned_cols=188 Identities=15% Similarity=0.235 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCC-----hHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh-
Q 000143 1435 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA-----WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL- 1508 (2058)
Q Consensus 1435 ~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~-----~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L- 1508 (2058)
..|..-.+++...-..++..-.+.+...+-+.+.+.+ |..-.+++-.+..+++..+...... +|.+++..
T Consensus 439 ~YR~diSD~~~~~Y~ilgd~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~----i~rl~~~~a 514 (982)
T KOG2022|consen 439 SYRKDISDLLMSSYSILGDGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTW----IPRLFETSA 514 (982)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHH----HHHHHHhcc
Confidence 3455555555555555554434555555555555443 7777778888888887766555544 44444443
Q ss_pred ----cCCCHHHHHHHHHHHHHHHhhcCc-h-hHHhHHHHHHhccCCCChhHH--HHHHHHHhccccccCChhhHhhHHHH
Q 000143 1509 ----TDTHPKVQSAGQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTK--YSLDILLQTTFVNTVDAPSLALLVPI 1580 (2058)
Q Consensus 1509 ----~D~~~~VR~aA~~aL~~l~~~~~~-~-~i~~lvp~Ll~~l~d~~~~vr--~al~~L~~~~f~~~~~~~~l~~llp~ 1580 (2058)
.-.++..-..+...++.++..+++ | ++...+|.|++.+..+....+ ..+..+..+ ..+.-.|+...++..
T Consensus 515 sik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~--C~~~L~py~d~~~a~ 592 (982)
T KOG2022|consen 515 SIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCET--CPESLDPYADQFSAV 592 (982)
T ss_pred ccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHh--hhhhCchHHHHHHHH
Confidence 234788888899999999998874 4 678899999999987765543 234444431 111122344444444
Q ss_pred HHHhhcC--CCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC
Q 000143 1581 VHRGLRE--RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629 (2058)
Q Consensus 1581 L~~~L~d--~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~ 1629 (2058)
....+.. -...+|......+|.+.+.. .++....|+..++..+..-++
T Consensus 593 ~~e~l~~~~~~~S~~~klm~sIGyvls~~-~pEe~~kyl~~lin~il~qle 642 (982)
T KOG2022|consen 593 CYEVLNKSNAKDSDRLKLMKSIGYVLSRL-KPEEIPKYLMKLINPILSQLE 642 (982)
T ss_pred HHHHhcccccCchHHHHHHHHHHHHHHhc-cHHhHHHHHHHHHHHHHHHHH
Confidence 4444432 23456777888899888765 367778888888877766544
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.045 Score=70.00 Aligned_cols=189 Identities=15% Similarity=0.225 Sum_probs=141.3
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1573 ~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
+...++|.+.+.++..+..+|..-.+-+......+.+ ..+.++++|.+...+.|.++.+|+...+++..++..+++
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 4456899999999998889998877777777665543 235567899999999999999999999999999999998
Q ss_pred cCc-cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHH-HHHhhccCChhHHHHHHHHHHHhHHHhchh
Q 000143 1653 ENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPD-IIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2058)
Q Consensus 1653 ~~~-~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~-Ll~~l~~~~~~vR~~al~~l~~la~~~g~~ 1730 (2058)
..+ .+++..+ ..++.|+....|.....+++++...+.......++.. ....+.|+-+.-|.+....+......+..
T Consensus 403 ~~Ln~Ellr~~-ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~- 480 (690)
T KOG1243|consen 403 RNLNGELLRYL-ARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ- 480 (690)
T ss_pred hhhcHHHHHHH-HhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch-
Confidence 844 3566655 4444577777899999999888766544433334332 33346677777788877777665555443
Q ss_pred HHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 000143 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2058)
Q Consensus 1731 f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~ 1768 (2058)
...-.+++|.+....-|++..||+.+..++..+....
T Consensus 481 -~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 481 -SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred -hhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 2355678899999999999999999999988776543
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.047 Score=69.87 Aligned_cols=221 Identities=23% Similarity=0.224 Sum_probs=155.8
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc----ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccc
Q 000143 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM----QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL 1374 (2058)
Q Consensus 1299 ~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~----~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l 1374 (2058)
..+++.|+..+.-.+ ++...+.++.... .+.++..+..++-.|+...|-.+|..-.+.+...+..+....+
T Consensus 292 ~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~ 366 (690)
T KOG1243|consen 292 SKVLPILLAALEFGD-----AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQIL 366 (690)
T ss_pred HHHHHHHHHHhhccc-----cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhh
Confidence 345566666654332 3334444544332 2223444444555566777788998888888888887766655
Q ss_pred chhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 000143 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
. ..|.|.+...+.|. |+..|+..+.++..++..++.. ..=.+++..+-..-.|++..+|-...-|++.+...+.+.
T Consensus 367 ~-d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~ 442 (690)
T KOG1243|consen 367 N-DQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS 442 (690)
T ss_pred c-chhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccccchh
Confidence 3 47899999999887 8999999999999999988853 233467777777777999999999999999998877665
Q ss_pred hHHhHHHHHHH-hccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 000143 1455 GVKLVLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2058)
Q Consensus 1455 ~v~~llp~Ll~-~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2058)
..+.+++.-+. .+.|+-...|.+++..+.......+. ...-..|+|.+....-|+++.||..|..++..+-..+
T Consensus 443 ~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 443 VRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred hhccccchhhhhhhcCCCCCchhhhhHHHhhcccccch--hhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 55555554443 47788888898888777665544332 2223478888888888999999999999988876544
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.25 E-value=5.8 Score=50.73 Aligned_cols=114 Identities=20% Similarity=0.240 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHh
Q 000143 1896 SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974 (2058)
Q Consensus 1896 ~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L 1974 (2058)
-++++.+.+|.-||..+.- +..++..+=+|.+...+. .++|.+|.+++.++|++.-+... +.+..-..+...+
T Consensus 907 ~sd~~lq~aA~l~L~klMC-lS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~-----~~de~t~yLyrrL 980 (1128)
T COG5098 907 FSDEELQVAAYLSLYKLMC-LSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT-----TADEHTHYLYRRL 980 (1128)
T ss_pred cCCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhh-----hhHHHHHHHHHHh
Confidence 3688899999999988763 344455666777777775 78899999999999998866532 3456667788899
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCCc
Q 000143 1975 CDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ 2016 (2058)
Q Consensus 1975 ~D~d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~~ 2016 (2058)
.|.+.+||..+.-++.-+.- .|.-.+..-+|.+...|.|++
T Consensus 981 ~De~~~V~rtclmti~fLil-agq~KVKGqlg~ma~~L~ded 1021 (1128)
T COG5098 981 GDEDADVRRTCLMTIHFLIL-AGQLKVKGQLGKMALLLTDED 1021 (1128)
T ss_pred cchhhHHHHHHHHHHHHHHH-ccceeeccchhhhHhhccCCc
Confidence 99999999999999888864 344445567888888898876
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0071 Score=45.97 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1500 Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
|+|.+.+.++|++++||.+|+++|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.11 Score=65.64 Aligned_cols=150 Identities=25% Similarity=0.348 Sum_probs=113.4
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCc----hhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHh-
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD----MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG- 1649 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~----l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~- 1649 (2058)
.+.-|++-++++-++..||..|+..+-++... .+|+. ....++.-...+..++.|+.|.||..|...+..+...
T Consensus 173 rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~-~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 173 RLYKPILWRGLKARNSEVRSNAALLFVEAFPI-RDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHhHHHHHhhccCchhhhhhHHHHHHHhccC-CCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 34568888999999999999999998887764 34432 3334444455678889999999999998887766643
Q ss_pred ---hcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhc-hhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHH
Q 000143 1650 ---MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPR 1725 (2058)
Q Consensus 1650 ---lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g-~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~ 1725 (2058)
+++....+++..+.+.+..|+..++|.....+|..++..-- ...++.++|.+-..+.|....||-++..++..+-.
T Consensus 252 We~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~ 331 (1005)
T KOG1949|consen 252 WEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA 331 (1005)
T ss_pred HHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence 33334557777788888888888899999999988865322 12568888988888889999999999888766543
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.088 Score=64.28 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=83.2
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH--------
Q 000143 1892 SSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-------- 1963 (2058)
Q Consensus 1892 ~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~-------- 1963 (2058)
-.+.+++..+|..|.+|+|-.+- ++.+...+.++.+...++..+..+|..++.++.+++...|.+.+....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~ 112 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDS 112 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchH
Confidence 45788999999999999998775 344555666777777776568889999999999999888776554433
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000143 1964 DELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2058)
Q Consensus 1964 ~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~ 1995 (2058)
..++..+.+.+.+.++++|..|+++|..+.-+
T Consensus 113 ~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 113 KSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 36888899999989999999999999998743
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.61 Score=55.31 Aligned_cols=225 Identities=15% Similarity=0.149 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHhHhccCC---cchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc---ccchHHHHHHHHHHHhc
Q 000143 1275 LVREGVVIFTGALAKHLAKDD---PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM---QDEAPTLVSRLLDQLMK 1348 (2058)
Q Consensus 1275 ~vR~~av~~Lg~La~~l~~~~---p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~---~~~~~~~v~~Ll~~L~~ 1348 (2058)
.+|..++.+|+.+...+++.. ..++.++.-+...|.|. ..+.. +..++..+++.. ++....++..+++....
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~-~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~~~ 91 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQP-ALKGLLALVKMKNFSPESAVKILRSLFQNVDV 91 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHH-HHHHHHHHHhCcCCChhhHHHHHHHHHHhCCh
Confidence 789999999999998887542 23555666666667543 23333 366666666332 22234445555543322
Q ss_pred C-CCHHHHHHHHHHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Q 000143 1349 S-DKYGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL 1426 (2058)
Q Consensus 1349 ~-~~~~vR~~Aa~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll 1426 (2058)
+ -....|....+.+..++.......-. ..+++..+.+.+..++||+.=.-+...+..+..... +.++..++...+.
T Consensus 92 q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~~~~e~lFd~~~ 169 (262)
T PF14500_consen 92 QSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--ISEFAEDLFDVFS 169 (262)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHhh
Confidence 1 13567888888888887754321100 125677778888999999877666666666666655 3666777766665
Q ss_pred HHc--------CCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh-hhHhhh
Q 000143 1427 VAF--------SDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP-QQLSQC 1496 (2058)
Q Consensus 1427 ~~l--------~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p-~~l~~~ 1496 (2058)
..+ +|+...-|+.-..++..++... ..+ +..+|.+++.|.+....+|..+++.|...+...+ +.+.+|
T Consensus 170 cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~--~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~ 247 (262)
T PF14500_consen 170 CYFPITFRPPPNDPYGITREDLKRALRNCLSST--PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPH 247 (262)
T ss_pred heeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc--HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 543 2433333444444555544322 222 6789999999999999999999999998876654 457788
Q ss_pred hhhHHHHHH
Q 000143 1497 LPKIVPKLT 1505 (2058)
Q Consensus 1497 L~~Iip~L~ 1505 (2058)
+..|...+.
T Consensus 248 ~~~iw~~lk 256 (262)
T PF14500_consen 248 WSTIWNALK 256 (262)
T ss_pred HHHHHHHHH
Confidence 777777654
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.12 E-value=7.2 Score=50.64 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhhhCccccch-h--------chHHHHHH-HHhCCCCHHH-----HHHHHHHHHHHHHHhc------cc
Q 000143 1355 RRGAAFGLAGVVKGFGISSLKK-Y--------GIAATLRE-GLADRNSAKR-----REGALLAFECLCEKLG------RL 1413 (2058)
Q Consensus 1355 R~~Aa~~L~~l~~~~g~~~l~~-~--------~il~~L~~-~l~~~~~~~~-----R~~al~al~~L~~~lg------~~ 1413 (2058)
.+-|++.|-++.+..+...... + .++|.+.+ .++.-..|.. -...+..+..+.+.+. +.
T Consensus 259 kKWa~ynLyR~fqRy~k~s~~~~y~~f~~~f~t~vp~il~tffkqie~wgqgqLWlsd~~LYfi~~Fve~cv~~d~tw~l 338 (970)
T COG5656 259 KKWAAYNLYRSFQRYIKKSYKKSYLSFYITFMTRVPMILATFFKQIEEWGQGQLWLSDIELYFIDFFVELCVDADQTWRL 338 (970)
T ss_pred hHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeecchHHHHHHHHHHHHHhhhHhhHhh
Confidence 4557788888887766433221 1 12333222 1211111211 2334555666555443 35
Q ss_pred chhhHHHHHHHH-HHHc-----------CCCCHHHHH-------------HHHHHHHHHHHhhhhhhHHhHHHHHHHhcc
Q 000143 1414 FEPYVIQMLPLL-LVAF-----------SDQVVAVRE-------------AAECAARAMMSQLSAQGVKLVLPSLLKGLE 1468 (2058)
Q Consensus 1414 ~~p~l~~llp~L-l~~l-----------~D~~~~VR~-------------aA~~al~~l~~~l~~~~v~~llp~Ll~~L~ 1468 (2058)
++|++.-++... +.++ .|++..+|+ +|..++-.+..+-+.+.+..+++.+...+.
T Consensus 339 ~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~TfqgiLsf~~sil~ 418 (970)
T COG5656 339 MEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEETFQGILSFLLSILG 418 (970)
T ss_pred hccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchhhhhhHHHHHHHHHh
Confidence 678776444322 1221 244555554 345555555555555667888888888773
Q ss_pred -C-------CChHHHHHHHHHHHHHHhh--ChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000143 1469 -D-------KAWRTKQSSVQLLGAMAYC--APQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2058)
Q Consensus 1469 -~-------~~~~~R~~a~~~Lg~la~~--~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2058)
. ++.+...+|+..++++... -+......+ .-|++.++..++++..-.|..||..+..+.+.+.++
T Consensus 419 qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~ 494 (970)
T COG5656 419 QSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN 494 (970)
T ss_pred cccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc
Confidence 1 3467778899999888762 122222222 246777888889998999999999999997766654
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.26 Score=67.18 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=100.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----
Q 000143 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---- 1454 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~---- 1454 (2058)
-+.++.+.+.+.+-. ..+ +...+..+.......-..++..+.+.+.......++.++.+|+-+++.++...-..
T Consensus 396 av~~i~~~I~~~~~~-~~e-a~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~ 473 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLT-DDE-AAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSA 473 (618)
T ss_dssp HHHHHHHHHHTT-S--HHH-HHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHcCCCC-HHH-HHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccc
Confidence 345556666554221 112 22334444433322223344444443332222356789999999998887654332
Q ss_pred ---------hHHhHHHHHHHhc----cCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCC---CHHHHHH
Q 000143 1455 ---------GVKLVLPSLLKGL----EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDT---HPKVQSA 1518 (2058)
Q Consensus 1455 ---------~v~~llp~Ll~~L----~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~---~~~VR~a 1518 (2058)
..+.+++.+...+ ...+...+..++.+||++.. +.+++.+...+.+. ...+|.+
T Consensus 474 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~ 543 (618)
T PF01347_consen 474 EFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVA 543 (618)
T ss_dssp -------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHH
Confidence 1234455554444 45567788899999998853 46677777777665 6899999
Q ss_pred HHHHHHHHHhhcCchhHHhHHHHHHhccCCCCh--hHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHH
Q 000143 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPND--HTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595 (2058)
Q Consensus 1519 A~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~--~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~ 1595 (2058)
|++||.+++....+ .+.+.++..+.|+.+ .+| .|+..+... .|+...+..+....-.+++..|+..
T Consensus 544 Ai~Alr~~~~~~~~----~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~-------~P~~~~l~~i~~~l~~E~~~QV~sf 612 (618)
T PF01347_consen 544 AIQALRRLAKHCPE----KVREILLPIFMNTTEDPEVRIAAYLILMRC-------NPSPSVLQRIAQSLWNEPSNQVASF 612 (618)
T ss_dssp HHHTTTTGGGT-HH----HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT----------HHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHhhcCcH----HHHHHHHHHhcCCCCChhHHHHHHHHHHhc-------CCCHHHHHHHHHHHhhCchHHHHHH
Confidence 99999988665433 333444444444433 467 566665431 2444444444333345566665543
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0096 Score=45.27 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000143 1966 LIPTIRTALCDSILEVRESAGLAFSTLFKS 1995 (2058)
Q Consensus 1966 ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~ 1995 (2058)
++|.+.+.++|++++||++|+.+++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999864
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=17 Score=54.09 Aligned_cols=270 Identities=13% Similarity=0.079 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHh-HhccCC---cchH-HHHHHHHhhhC-CCCHHHHHHHHHhhHhhHhhcccchH---HHHHHHHHH
Q 000143 1275 LVREGVVIFTGALAK-HLAKDD---PKVH-AVVDKLLDVLN-TPSEAVQRAVSSCLSPLMQSMQDEAP---TLVSRLLDQ 1345 (2058)
Q Consensus 1275 ~vR~~av~~Lg~La~-~l~~~~---p~i~-~iv~~Ll~~L~-~~~~~V~~av~~~L~~l~~~~~~~~~---~~v~~Ll~~ 1345 (2058)
.++.-|+..|..++- .++..+ .+++ .++..+...+. ..+.+|+..+..|+..++....+.+. ..|-.++..
T Consensus 1152 ~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~ 1231 (1780)
T PLN03076 1152 SIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTT 1231 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHH
Confidence 477778888888875 333322 1222 45555544443 45678999999999988876543332 223334443
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhhCc-------cccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-----c-
Q 000143 1346 LMKSDKYGERRGAAFGLAGVVKGFGI-------SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-----R- 1412 (2058)
Q Consensus 1346 L~~~~~~~vR~~Aa~~L~~l~~~~g~-------~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg-----~- 1412 (2058)
...++....-+.|...+..++...-. ..+ .+++..+.+...+..+.+.--.|+..|..++..+- .
T Consensus 1232 aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~ 1309 (1780)
T PLN03076 1232 AAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS 1309 (1780)
T ss_pred HHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc
Confidence 33444455555666667666653211 111 14555555555444333333333333333322210 0
Q ss_pred ---------------------------cch---hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----h---
Q 000143 1413 ---------------------------LFE---PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----G--- 1455 (2058)
Q Consensus 1413 ---------------------------~~~---p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~----~--- 1455 (2058)
.-+ .+.-.++-.+.....|+.+.||..|.+.+-.++...+.. .
T Consensus 1310 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~ 1389 (1780)
T PLN03076 1310 SRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWER 1389 (1780)
T ss_pred ccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 000 122233344445567999999999999888877665542 2
Q ss_pred -HHhHHHHHHHhccC------------------------CChH--HHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh
Q 000143 1456 -VKLVLPSLLKGLED------------------------KAWR--TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2058)
Q Consensus 1456 -v~~llp~Ll~~L~~------------------------~~~~--~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L 1508 (2058)
+..++.+++..+.. ..|- +-..|+..+..+....-+.+...|+.++..|..+.
T Consensus 1390 if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci 1469 (1780)
T PLN03076 1390 VFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFI 1469 (1780)
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 25566666655421 1252 23334444444444444556778888888888888
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcC----chhHHhHHHHHHhcc
Q 000143 1509 TDTHPKVQSAGQTALQQVGSVIK----NPEIASLVPTLLMGL 1546 (2058)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~----~~~i~~lvp~Ll~~l 1546 (2058)
..++..+...++.||.++....+ +.++..++..+.+.+
T Consensus 1470 ~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1470 KRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred cCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 88899999999999999987654 345566666655543
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=95.99 E-value=1 Score=58.09 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=81.5
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhccc
Q 000143 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2058)
Q Consensus 1589 s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~ 1668 (2058)
+..+++.|++.|..+... |....+..+..++.++.|.+..||..|++.|..+++.- +++.+.+...|.+.|.+
T Consensus 35 ~~k~K~Laaq~I~kffk~------FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kvaDvL~QlL~t 107 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKH------FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKVADVLVQLLQT 107 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-------GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHhh------ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHHHHHHHHHHhc
Confidence 568899999999887653 34456678999999999999999999999999999753 45678888888898886
Q ss_pred CCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHH
Q 000143 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722 (2058)
Q Consensus 1669 d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~ 1722 (2058)
|+.. .+..+-.+|..+...-....+..++..+... .+.+..+|+.++..+..
T Consensus 108 dd~~-E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~ 159 (556)
T PF05918_consen 108 DDPV-ELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLRE 159 (556)
T ss_dssp --HH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHH
T ss_pred ccHH-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHH
Confidence 6544 5666667776666543333333443333321 24577899988877643
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=95.96 E-value=4.6 Score=50.95 Aligned_cols=236 Identities=13% Similarity=0.101 Sum_probs=141.6
Q ss_pred CHHHHHHHHHHHHHHHHHhc--ccc-hhhHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHHHHhhhhhhH-----HhHHH
Q 000143 1392 SAKRREGALLAFECLCEKLG--RLF-EPYVIQMLPLLLVAFSDQV--VAVREAAECAARAMMSQLSAQGV-----KLVLP 1461 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg--~~~-~p~l~~llp~Ll~~l~D~~--~~VR~aA~~al~~l~~~l~~~~v-----~~llp 1461 (2058)
+.+.-..|+.+++.+..... ..+ ..+..-++...+..+.+++ ..+......++.. .+++++.+ ..++
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~- 135 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLL- 135 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHH-
Confidence 34555677777777653211 111 1222235566666665543 3455555555543 34444322 2222
Q ss_pred HHHHhccC--CChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-hhHHhH
Q 000143 1462 SLLKGLED--KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-PEIASL 1538 (2058)
Q Consensus 1462 ~Ll~~L~~--~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-~~i~~l 1538 (2058)
..+..+.+ +.-.+-.+.+.++-.+....|..|..+....+|.++..+-+....+|..|...+..+...++. ..+...
T Consensus 136 ~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~ 215 (372)
T PF12231_consen 136 AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS 215 (372)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 22233332 233444556778888888899999999988999999988888999999987777666655542 222222
Q ss_pred HHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCC-CchhhhH
Q 000143 1539 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP-KDMIPYI 1617 (2058)
Q Consensus 1539 vp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~-~~l~pyl 1617 (2058)
+...++....+. .....+.+.+...+.++. .-..|.++++.+..+++.+ -+--+|+
T Consensus 216 ~~~~~~~~~~~~---------------------~~~~~~~~~L~~mi~~~~--~~~~a~~iW~~~i~LL~~~~~~~w~~~ 272 (372)
T PF12231_consen 216 VLEDLQRSLENG---------------------KLIQLYCERLKEMIKSKD--EYKLAMQIWSVVILLLGSSRLDSWEHL 272 (372)
T ss_pred HHHHhccccccc---------------------cHHHHHHHHHHHHHhCcC--CcchHHHHHHHHHHHhCCchhhccHhH
Confidence 222222111111 122334555555555521 1234556777766666554 3445678
Q ss_pred hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1618 ~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
...+......++++++.+|..|..|+..++.....+
T Consensus 273 n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~ 308 (372)
T PF12231_consen 273 NEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPN 308 (372)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 888888888999999999999999999999855543
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.4 Score=61.37 Aligned_cols=242 Identities=17% Similarity=0.204 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHhHHH-HHHHhccCCChHHHHHHHHHHHHHHhhChhhHh-hhhhhHHHHHHHHhcCC
Q 000143 1434 VAVREAAECAARAMMSQLSAQGVKLVLP-SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLTDT 1511 (2058)
Q Consensus 1434 ~~VR~aA~~al~~l~~~l~~~~v~~llp-~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~-~~L~~Iip~L~~~L~D~ 1511 (2058)
-.-|-.|..+++.++..++......+.. .+..+|++..--.|..+...+..++......-. +..+.+.+.|...|+++
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 3558899999999999998877766665 588999999999999999999999987653311 11345556666666643
Q ss_pred C-----------HHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccC---C--CCh-hHHHHHHHHHhccccccCChhhH
Q 000143 1512 H-----------PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLT---D--PND-HTKYSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1512 ~-----------~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~---d--~~~-~vr~al~~L~~~~f~~~~~~~~l 1574 (2058)
. ..+|..|..-+..|...-.=+ ..-+|.|-...+ + |+. .+..|-....
T Consensus 181 ~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~--~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~------------- 245 (441)
T PF12054_consen 181 EPPYYDELVPSLKRLRTECQQLLATFRDVGKVP--PSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVG------------- 245 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--hhhccccccccccccccCCccCCHHHHHHHHH-------------
Confidence 2 334555555444444322100 111111111111 0 000 0001111000
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~ 1654 (2058)
.....+.+.+... .|..+.+.+..- +.-+...+..+...-..-+-.|+..++.|+-.+. .+ ++.
T Consensus 246 -~~~~~l~~~l~~~---~k~~a~~~Le~~----------r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~-~l-P~K 309 (441)
T PF12054_consen 246 -EDFEKLKKSLSPS---QKLSALQALEDR----------RQRLQAAIEEAKEVQTSRDVRVLAAAASALVALG-GL-PKK 309 (441)
T ss_pred -HHHHHHHHhcCCc---ccchHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cC-CCC
Confidence 0011111111110 000011111000 0001111111111111123345555555554442 23 345
Q ss_pred ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhc
Q 000143 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCS 1706 (2058)
Q Consensus 1655 ~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~ 1706 (2058)
++.+|..||+.++.+++...+..++.+++.++..+-.. --++++..|...++
T Consensus 310 LnPiIrpLMdSIK~Een~~LQ~rsA~slA~Li~~~~~rkp~PndKIvkNLc~flC 364 (441)
T PF12054_consen 310 LNPIIRPLMDSIKREENELLQQRSAESLARLIQLCVDRKPCPNDKIVKNLCTFLC 364 (441)
T ss_pred ccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHhhhhc
Confidence 88899999999999999989999999999998877522 12566666666654
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.95 E-value=1.5 Score=54.69 Aligned_cols=215 Identities=18% Similarity=0.174 Sum_probs=124.3
Q ss_pred hhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHh
Q 000143 1773 LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV 1852 (2058)
Q Consensus 1773 l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~ 1852 (2058)
++.++-.+.++...++..||..+++.+..+..++.. . .+..++..+..+...
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e--------------------I--------De~l~N~L~ekl~~R 140 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE--------------------I--------DEVLANGLLEKLSER 140 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch--------------------H--------HHHHHHHHHHHHHHH
Confidence 445677788888889999999999988877533210 0 011223333444444
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhc
Q 000143 1853 RSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL 1932 (2058)
Q Consensus 1853 ~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l 1932 (2058)
.-|....||..|+.+++.+-.-... -+...-.++..++ -.||+.++|..|.--+. +-+...|.+.+..
T Consensus 141 ~~DRE~~VR~eAv~~L~~~Qe~~~n-een~~~n~l~~~v--qnDPS~EVRr~allni~---------vdnsT~p~IlERa 208 (885)
T COG5218 141 LFDREKAVRREAVKVLCYYQEMELN-EENRIVNLLKDIV--QNDPSDEVRRLALLNIS---------VDNSTYPCILERA 208 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHH--hcCcHHHHHHHHHHHee---------eCCCcchhHHHHh
Confidence 5588889999999888776543221 1122222333232 36889999987754332 2345566666655
Q ss_pred CCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhc
Q 000143 1933 KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHAL 2012 (2058)
Q Consensus 1933 ~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L 2012 (2058)
.|-+...|..+- ..++...|.-.....-+.+. .+...+.|.+..||.+++.+++.-|.... |.=+-.|++.|
T Consensus 209 rDv~~anRr~vY---~r~Lp~iGd~~~lsi~kri~-l~ewgl~dRe~sv~~a~~d~ia~~w~~~~----d~~lveLle~l 280 (885)
T COG5218 209 RDVSGANRRMVY---ERCLPRIGDLKSLSIDKRIL-LMEWGLLDREFSVKGALVDAIASAWRIPE----DLRLVELLEFL 280 (885)
T ss_pred hhhhHHHHHHHH---HHHhhhhcchhhccccceeh-hhhhcchhhhhhHHHHHHHHHHHHhcccc----cccHHHHHHHH
Confidence 555544443322 23334443321111113333 56668899999999999999998876432 22222344444
Q ss_pred CCCcchHHHHHHHHHHHhhcCCcc
Q 000143 2013 EDDQTSDTALDGLKQILSVRTTAV 2036 (2058)
Q Consensus 2013 ~~~~~~~~al~aL~~i~~~~~~~~ 2036 (2058)
.-. .+..+..|++.+...++++.
T Consensus 281 DvS-r~sv~v~aik~~F~~R~D~l 303 (885)
T COG5218 281 DVS-RRSVLVAAIKGVFEKRPDVL 303 (885)
T ss_pred hhh-hHHHHHHHHHHHHhhccccc
Confidence 322 23477788888887776543
|
|
| >PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.42 Score=59.59 Aligned_cols=128 Identities=17% Similarity=0.146 Sum_probs=86.4
Q ss_pred CHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHhCcc--------------
Q 000143 1857 SLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS---LASSSSERRQVAGRALGELVRKLGER-------------- 1919 (2058)
Q Consensus 1857 ~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~---L~~~~~~~R~~A~~~Lg~L~~~lg~~-------------- 1919 (2058)
....|.+|.+.+..++...+....+++...++.++.. -.+.++..+..|...++.++.+....
T Consensus 224 ~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~ 303 (370)
T PF08506_consen 224 SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVV 303 (370)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HH
T ss_pred cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHH
Confidence 3567899999999999887777666666555555432 23457888999999999998765311
Q ss_pred -h-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHH
Q 000143 1920 -V-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989 (2058)
Q Consensus 1920 -~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~ 1989 (2058)
+ ...++|-|. .-.+..|-.|..+|..+...-..+++ +.+..++|.+...|.+++.-|+.-||.|+
T Consensus 304 ~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~----~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 304 DFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK----EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H----HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH----HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 0 134556655 22244577888888877655555544 34578999999999999999999999875
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C. |
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.9 Score=56.67 Aligned_cols=150 Identities=18% Similarity=0.111 Sum_probs=90.9
Q ss_pred HHHHHHHHHhhcCC--CHHHHHHHHHHH---HHHHhhCh-hhHHHhHHHHHHHHHHHhc--------CCCHHHHHHHHHH
Q 000143 1843 NEVLAALYMVRSDV--SLSVRQAALHVW---KTIVANTP-KTLKEIMPVLMNTLISSLA--------SSSSERRQVAGRA 1908 (2058)
Q Consensus 1843 ~~vL~~L~~~~~D~--~~~VR~aA~~~l---~~lv~~~~-~~l~~~l~~L~~~l~~~L~--------~~~~~~R~~A~~~ 1908 (2058)
+.++.-++.++... ...+|..++..+ .....+.+ ..+..+-+.+...+...+. ..+...|..++++
T Consensus 318 ~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~ 397 (501)
T PF13001_consen 318 PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYET 397 (501)
T ss_pred ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHH
Confidence 34444555554444 556777777776 55554443 3334444444444444442 3467899999999
Q ss_pred HHHHHHHhCcchh--hchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhh---HhHHhhHHHHHHHHhcCCCHHHHH
Q 000143 1909 LGELVRKLGERVL--PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL---LSFMDELIPTIRTALCDSILEVRE 1983 (2058)
Q Consensus 1909 Lg~L~~~lg~~~l--~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l---~~~~~~ll~~L~~~L~D~d~~VR~ 1983 (2058)
||.++++...-+. -.++..|.+.+.++.+++|..+-.||+.++.......- ..-...+.-.+.....+....+|.
T Consensus 398 lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~ 477 (501)
T PF13001_consen 398 LGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRY 477 (501)
T ss_pred HHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHH
Confidence 9999998776543 35667777778888899999998899988877643211 000111112222333456677787
Q ss_pred HHHHHHHHH
Q 000143 1984 SAGLAFSTL 1992 (2058)
Q Consensus 1984 ~Aa~a~~~l 1992 (2058)
.|..-...+
T Consensus 478 ~avk~an~~ 486 (501)
T PF13001_consen 478 AAVKYANAC 486 (501)
T ss_pred HHHHHHHHh
Confidence 776554444
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.1 Score=57.19 Aligned_cols=89 Identities=21% Similarity=0.304 Sum_probs=75.2
Q ss_pred hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHH---HHHhC
Q 000143 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL---FKSAG 1997 (2058)
Q Consensus 1921 l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l---~~~~g 1997 (2058)
+..++|.+.+++.+.+..-|.-|..++.+++...+.+.+.|.+++++..++.+|+..|++|..++..++-.+ ...+|
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 467899999999887767788888899999988667788999999999999999999999999999999999 55556
Q ss_pred h---hhHHHHHHHHH
Q 000143 1998 M---QAIDEIVPTLL 2009 (2058)
Q Consensus 1998 ~---~~~~~ilp~Ll 2009 (2058)
. +++.+++|.+-
T Consensus 116 ~aLvPyyrqLLp~ln 130 (183)
T PF10274_consen 116 EALVPYYRQLLPVLN 130 (183)
T ss_pred HHHHHHHHHHHHHHH
Confidence 3 46666666654
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.5 Score=50.28 Aligned_cols=241 Identities=16% Similarity=0.136 Sum_probs=143.1
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHhhcccCcc-----chHHHHHhhcccCCChHHHhhHHHHHHHHHHH--hchhHHHH
Q 000143 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP-----DLVSWLLDALKSDNSNVERSGAAQGLSEVLAA--LGTVYFEH 1696 (2058)
Q Consensus 1624 L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~-----~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~--~g~~~l~~ 1696 (2058)
|...+.++++.+|..|...|+.+...+..+.+. -++..+.+.+. |. . .-..+..++..+... ++.+....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~-D~-~-~~~~~l~gl~~L~~~~~~~~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD-DH-A-CVQPALKGLLALVKMKNFSPESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc-cH-h-hHHHHHHHHHHHHhCcCCChhhHHH
Confidence 445567899999999999999999988866443 24455555553 22 1 223346666666522 23334455
Q ss_pred hhHHHHHhhcc--CChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhcccch
Q 000143 1697 ILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATTSL 1773 (2058)
Q Consensus 1697 llp~Ll~~l~~--~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d-~~~~VR~~a~~al~~lv~~~~~~~l 1773 (2058)
++..+.+...- -....|..++..+..+...........-..++..+++.+.. .+|.--..+.+.+..+...+.-
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--- 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--- 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---
Confidence 66666554432 25678888898888887776555444445566666666643 3454333344444444444331
Q ss_pred hchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhCh--hhHHHHHHHHHH
Q 000143 1774 PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR--DKRNEVLAALYM 1851 (2058)
Q Consensus 1774 ~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~--~~~~~vL~~L~~ 1851 (2058)
+. -.+-+-+.+++.-.++-+. ..+|+.+.+.++....+.+.+.. .+....++.+..
T Consensus 158 ----~~---------------~~e~lFd~~~cYFPI~F~p---p~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~Lle 215 (262)
T PF14500_consen 158 ----SE---------------FAEDLFDVFSCYFPITFRP---PPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLE 215 (262)
T ss_pred ----ch---------------hHHHHHHHhhheeeeeeeC---CCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHH
Confidence 10 1111222223332222111 01233445566666666666642 333456777777
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHhHHHHHHHHHH
Q 000143 1852 VRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLIS 1892 (2058)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~lv~~~~-~~l~~~l~~L~~~l~~ 1892 (2058)
.+......++..++.++..++..++ ..+.+++..+++.+..
T Consensus 216 KL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 216 KLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 7878888899999999999998776 5688888888887653
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.3 Score=54.07 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=97.6
Q ss_pred HHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhh-Hhh
Q 000143 1418 VIQMLPLLL-VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQ 1495 (2058)
Q Consensus 1418 l~~llp~Ll-~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~-l~~ 1495 (2058)
+..++..++ ..+..+++.||+.|.+|++.++- +..+.-...++.+...+..++..+|..|++++..+.-..+.. +..
T Consensus 24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCL-LDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 336665444 77888899999999999998863 333334667788888887678899999999999888553322 211
Q ss_pred --------hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--cCc-hh-HHhHHHHHHhccCCCChhHHHHHHHHHh
Q 000143 1496 --------CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKN-PE-IASLVPTLLMGLTDPNDHTKYSLDILLQ 1562 (2058)
Q Consensus 1496 --------~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~--~~~-~~-i~~lvp~Ll~~l~d~~~~vr~al~~L~~ 1562 (2058)
.-..++..+.+.+.+.++.+|..|++++..+.-. +.+ +. +..++-..+.--..++...|.++..+..
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 2246788888899988999999999999987542 334 32 2333333333333334566777766543
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=95.76 E-value=3.7 Score=53.17 Aligned_cols=134 Identities=17% Similarity=0.221 Sum_probs=85.1
Q ss_pred HHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHH
Q 000143 1662 LLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2058)
Q Consensus 1662 L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~ 1741 (2058)
+++..+. +...+.-+++-+..+...+.. .-++.+..++..+.|.+..||..++..+-.+|..-++ |+..+...
T Consensus 28 il~~~kg--~~k~K~Laaq~I~kffk~FP~-l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDv 100 (556)
T PF05918_consen 28 ILDGVKG--SPKEKRLAAQFIPKFFKHFPD-LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADV 100 (556)
T ss_dssp HHHGGGS---HHHHHHHHHHHHHHHCC-GG-GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHH
T ss_pred HHHHccC--CHHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHH
Confidence 3344442 344666777777776654432 3466788888999999999999999988888876554 78899999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1742 Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
|.++|..+++..+..+-.++..++..-....+..++..+... ...+..+|..++..+..=+
T Consensus 101 L~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 101 LVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-KSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH----HS-HHHHHHHHHHHHHHG
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-ccCchHHHHHHHHHHHHHH
Confidence 999999888888888888888877665554444444444421 1245678888888776544
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.096 Score=57.21 Aligned_cols=141 Identities=18% Similarity=0.234 Sum_probs=89.5
Q ss_pred HhhhhHHHHHhhCC-CCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCC---hHHHhhHHHHHHHHHHHh---
Q 000143 1617 IGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNS---NVERSGAAQGLSEVLAAL--- 1689 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d-~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~---~~~R~~aa~~L~~i~~~~--- 1689 (2058)
.|.+++.|...+.. .+|.+|..+.+.+|.++. +.+- -.+......+ ...-............+.
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~--------~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPY--------KHKSIQKSLDSKSSENSNDESTDISLPMMGISPS 78 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcH--------HHhcccccCCccccccccccchhhHHhhccCCCc
Confidence 35788888888764 469999999999999873 2221 1111110000 000000000111111111
Q ss_pred chh-HHHHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 000143 1690 GTV-YFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1690 g~~-~l~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~ 1766 (2058)
..+ +..-.+..++..++|+ -...+..++.++.++....|....||+++++|.++..+....+..|+....-+..++.
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 122 2344666777777776 3445557888888888889988899999999999999998777888888887777664
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.16 Score=55.69 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=89.3
Q ss_pred CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhH----HHHhhHHHHHhhccCChhHHHHHHHHHHHh---HHH
Q 000143 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY----FEHILPDIIRNCSHQRASVRDGYLTLFKYL---PRS 1726 (2058)
Q Consensus 1654 ~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~----l~~llp~Ll~~l~~~~~~vR~~al~~l~~l---a~~ 1726 (2058)
.++.++|.+++.|...+.+ -|..|.+++.+++...|.+. +..+++.+...++..++.|...++.++..+ ...
T Consensus 35 dy~~~Lpif~dGL~Et~~P-y~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 35 DYHHYLPIFFDGLRETEHP-YRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred chhhHHHHHHhhhhccCcc-HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 3567999999999854444 78889999999998855553 456666777788888999999999999999 778
Q ss_pred hchhHHHhHHHHHHHHHHhcc------C-----CCHHHHHHHHHHHHHHHHHhccc
Q 000143 1727 LGVQFQNYLQQVLPAILDGLA------D-----ENESVRDAALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1727 ~g~~f~pyl~~ilp~Ll~~L~------d-----~~~~VR~~a~~al~~lv~~~~~~ 1771 (2058)
.|+.+.||+.+++|.+-.... | ...++++...++++.+-..-+++
T Consensus 114 vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 899999999999999873221 1 23456777777777765555554
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=23 Score=51.13 Aligned_cols=224 Identities=19% Similarity=0.199 Sum_probs=151.5
Q ss_pred HHHhhhCCCCHHHHHHHHHhhHhhHhhcccc--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccc--hhch
Q 000143 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE--APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK--KYGI 1379 (2058)
Q Consensus 1304 ~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~--~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~--~~~i 1379 (2058)
.+...+..+++..+-.++++++.+....++. .....+..++++....|+-.|.+...+++.+-+..|.-.-. ...-
T Consensus 880 l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~ 959 (2067)
T KOG1822|consen 880 LIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTS 959 (2067)
T ss_pred HHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccH
Confidence 3445666777777777888888888776554 36788899999999888999999999999998876632211 1133
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC-CC--CHHHHHHHHHHHH------HHHHh
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQ--VVAVREAAECAAR------AMMSQ 1450 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~-D~--~~~VR~aA~~al~------~l~~~ 1450 (2058)
+..+....+|..++.++.-++.++..+.+..+..+..|+...+..+...+- ++ ...|+.+--+++. .+...
T Consensus 960 v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alitt 1039 (2067)
T KOG1822|consen 960 VSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITT 1039 (2067)
T ss_pred HHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHh
Confidence 456667777887889999999999999998888788888877777766543 32 3344443333333 44443
Q ss_pred hhhh----h----HHhHHHH----HHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHH
Q 000143 1451 LSAQ----G----VKLVLPS----LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518 (2058)
Q Consensus 1451 l~~~----~----v~~llp~----Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~a 1518 (2058)
++++ + ...+-.. ..=.+..++.-+..+++..+-++.-..|.+ -++..+++.+...+..++-..|.+
T Consensus 1040 lgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~--~n~~~lV~~L~~~l~s~~~i~r~~ 1117 (2067)
T KOG1822|consen 1040 LGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRH--VNLDSLVLQLCSLLSSSYLILRRA 1117 (2067)
T ss_pred cccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchh--ccHHHHHHHHHHHhcchhhhhhhh
Confidence 3332 1 1111111 111223446666677777777766666663 355688888888888888888899
Q ss_pred HHHHHHHHHhh
Q 000143 1519 GQTALQQVGSV 1529 (2058)
Q Consensus 1519 A~~aL~~l~~~ 1529 (2058)
...++.+++..
T Consensus 1118 ~~~clrql~~R 1128 (2067)
T KOG1822|consen 1118 SFSCLRQLVQR 1128 (2067)
T ss_pred HHhhhhHHhHH
Confidence 99999888763
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.7 Score=55.18 Aligned_cols=199 Identities=16% Similarity=0.160 Sum_probs=123.7
Q ss_pred HHHHHHHHhChhhHH--HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHH-H-h----c-CCCH
Q 000143 1829 HGRAIIEVLGRDKRN--EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS-S-L----A-SSSS 1899 (2058)
Q Consensus 1829 ~~~~l~~~Lg~~~~~--~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~-~-L----~-~~~~ 1899 (2058)
....+.+.+....++ +.+..+..+-.|+...|-..|.+.++.+..... =..++..++..... . - . --+.
T Consensus 220 ~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~e--d~~~V~~L~~Ly~G~~~~~~~~~~pa~~ 297 (501)
T PF13001_consen 220 RKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLE--DPDLVDRLFDLYLGKGIPPENGRPPASP 297 (501)
T ss_pred HHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHhcCCchhcCCCCCCH
Confidence 334455666555552 344555556688888999999999998765422 22455555555441 0 0 0 1133
Q ss_pred HHHHHHHHHHHHHHHHhCc-chhhchHHHHhhhcCCC--ChhHHHHHHHHH---HHHHHhhChhhhHhHHhhHHHHHHHH
Q 000143 1900 ERRQVAGRALGELVRKLGE-RVLPSIIPILSRGLKDP--SASRRQGVCIGL---SEVMASAGKSQLLSFMDELIPTIRTA 1973 (2058)
Q Consensus 1900 ~~R~~A~~~Lg~L~~~lg~-~~l~~llp~L~~~l~d~--~~~vR~~a~~aL---~eii~~~~~~~l~~~~~~ll~~L~~~ 1973 (2058)
..|. +.|+-+++.... ...+.++..+..++.++ +...|..+...+ ..++..+++..+...-+.+...+.+.
T Consensus 298 ~lq~---kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~ 374 (501)
T PF13001_consen 298 RLQE---KILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPL 374 (501)
T ss_pred HHHH---HHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccc
Confidence 4443 455566665432 35788888888998877 456666666666 66667776665555445555555555
Q ss_pred hc--------CCCHHHHHHHHHHHHHHHHHhChhhH--HHHHHHHHHhcCCC--cchHHHHHHHHHHHhhc
Q 000143 1974 LC--------DSILEVRESAGLAFSTLFKSAGMQAI--DEIVPTLLHALEDD--QTSDTALDGLKQILSVR 2032 (2058)
Q Consensus 1974 L~--------D~d~~VR~~Aa~a~~~l~~~~g~~~~--~~ilp~Ll~~L~~~--~~~~~al~aL~~i~~~~ 2032 (2058)
+. ..+...|..|-+++|.+.+....... -.++..|++.|.++ +.+-++-+||..++.+.
T Consensus 375 ~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af 445 (501)
T PF13001_consen 375 IQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAF 445 (501)
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Confidence 52 24678999999999999987654221 26788899999653 34556666666555543
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.34 Score=56.42 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH---HhHHHHHHHhcc
Q 000143 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV---KLVLPSLLKGLE 1468 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v---~~llp~Ll~~L~ 1468 (2058)
+|...-.++..+..++..-.+.+.+.+..++..+.+.++.....|..+|+.+++.++..+..... +..+-.|+..-.
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~ 180 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKAS 180 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 89888888888888888777777888888999999999999999999999999999988887543 444445554445
Q ss_pred CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC
Q 000143 1469 DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1469 ~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2058)
.++-.+|..|-.+|.+|.++...+ .+++.|...+...++.+|..++.+.......++
T Consensus 181 ~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~ 237 (334)
T KOG2933|consen 181 QDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSNPRVRAKAALCFSRCVIRLG 237 (334)
T ss_pred ccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhchhhhhhhhccccccceecc
Confidence 667788999999999999875433 456667777888899999999988877766554
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.2 Score=55.41 Aligned_cols=124 Identities=23% Similarity=0.310 Sum_probs=73.2
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHH-
Q 000143 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR- 1583 (2058)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~- 1583 (2058)
.-.+.|++++||.+|+.++..+-+.. .+++. . -++..... ..|... ...++.++-.+++
T Consensus 46 t~il~Dp~~kvR~aA~~~l~~lL~gs-k~~L~-------~-Ae~~~~~~---------~sFtsl--S~tLa~~i~~lH~~ 105 (182)
T PF13251_consen 46 TCILKDPSPKVRAAAASALAALLEGS-KPFLA-------Q-AEESKGPS---------GSFTSL--SSTLASMIMELHRG 105 (182)
T ss_pred HHHHcCCchhHHHHHHHHHHHHHHcc-HHHHH-------H-HHhcCCCC---------CCcccH--HHHHHHHHHHHHHH
Confidence 34678999999999999999998753 22221 1 11111000 011110 0122223333333
Q ss_pred ---hh-cCCCHHHHHHHHHHHHHHHhhhCCCCc-hhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 000143 1584 ---GL-RERSAETKKKAAQIVGNMCSLVTEPKD-MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2058)
Q Consensus 1584 ---~L-~d~s~~vr~~A~~~l~~L~~~l~~~~~-l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~ 1649 (2058)
.+ .+.+..+-.+..+++..+... +.... -..+++.++..+...+.+.++++|..+..++|.+...
T Consensus 106 Ll~~L~~E~~~~~l~q~lK~la~Lv~~-tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 106 LLLALQAEKSPPVLTQLLKCLAVLVQA-TPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHcc-CChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 33 345566777777788777663 22111 1335666777777778888999999999999998754
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.36 Score=53.22 Aligned_cols=119 Identities=23% Similarity=0.257 Sum_probs=92.0
Q ss_pred hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCh-
Q 000143 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFSTLFKSAGM- 1998 (2058)
Q Consensus 1921 l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D-~d~~VR~~Aa~a~~~l~~~~g~- 1998 (2058)
+..+...+...++++++..|...+.-++.++..++.+.+..+....+..+.+.++. ..+.+++.|..++..+....+.
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34455556777888888888877777888888887887767777778888887765 4567899999999999877652
Q ss_pred ---------hhHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcCCccchh
Q 000143 1999 ---------QAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPH 2039 (2058)
Q Consensus 1999 ---------~~~~~ilp~Ll~~L~~~~~~~~al~aL~~i~~~~~~~~lp~ 2039 (2058)
+.+..+++.+++.++++...+.++.+|..+|.++|...=|+
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt~rp~ 152 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTTFRPF 152 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCccccch
Confidence 34667888888888876678899999999999987765553
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=94.93 E-value=1.8 Score=55.33 Aligned_cols=298 Identities=16% Similarity=0.240 Sum_probs=141.8
Q ss_pred CCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhc----ccCCChHHHhhHHHHH
Q 000143 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDAL----KSDNSNVERSGAAQGL 1682 (2058)
Q Consensus 1610 ~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L----~~d~~~~~R~~aa~~L 1682 (2058)
..++.|+.+.++..|...+.-+...--+..++|+..+....+++ +...+++.|...+ ++..++.--.....++
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi 96 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESI 96 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHH
Confidence 36788899999999988876432121234455555555555544 2334444444443 3444554555677788
Q ss_pred HHHHHHhchh------HH-HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHH
Q 000143 1683 SEVLAALGTV------YF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRD 1755 (2058)
Q Consensus 1683 ~~i~~~~g~~------~l-~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~ 1755 (2058)
+.+++..... .+ +.++|.+.. +-..--.+|.||.-+++..++..-..+ .+
T Consensus 97 ~~lir~~~~~~~~~v~~~E~~L~P~f~~-------------------ILq~dV~EF~PYvfQIla~Lle~~~~~--~~-- 153 (435)
T PF03378_consen 97 GALIRFVCEADPEAVSQFEEALFPPFQE-------------------ILQQDVQEFIPYVFQILAQLLELRPSS--PL-- 153 (435)
T ss_dssp HHHHHHS-GGGHH---HHHHHHHHHHHH-------------------HHHTT-TTTHHHHHHHHHHHHHHSS----S---
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHcCCCC--CC--
Confidence 8777764432 11 223333333 223333467777777777777654411 00
Q ss_pred HHHHHHHHHHHHhcccchhchHHhHhh-hcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHH
Q 000143 1756 AALGAGHVLVEHYATTSLPLLLPAVED-GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834 (2058)
Q Consensus 1756 ~a~~al~~lv~~~~~~~l~~llp~L~~-~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~ 1834 (2058)
.+ ....++|.|.. .+-+..-.+ -+.+.++..++.+.+... . ..+.+.
T Consensus 154 -------------p~-~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i----~-------------~~~~l~ 201 (435)
T PF03378_consen 154 -------------PD-AYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFI----V-------------ANNQLE 201 (435)
T ss_dssp --------------T-TTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG---------------------S-CH
T ss_pred -------------cH-HHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhh----c-------------chhhHH
Confidence 01 11112222221 111111111 233445555554322110 0 000111
Q ss_pred HHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChh-hHHHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Q 000143 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK-TLKEIMPVLMNTLISSLASS-SSERRQVAGRALGEL 1912 (2058)
Q Consensus 1835 ~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~-~l~~~l~~L~~~l~~~L~~~-~~~~R~~A~~~Lg~L 1912 (2058)
.+|| +.+.+...... -..+..++..++.+.|. .+.+|++.++..+...+++. .......-+..++-+
T Consensus 202 ~iLg------vFQkLi~sk~~-----D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 202 PILG------VFQKLIASKAN-----DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp HHHH------HHHHHHT-TTC-----HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred HHHH------HHHHHHCCCCc-----chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 1222 11122222111 13466788888888885 67899999999999888754 333344444445555
Q ss_pred HHHhCcch------------hh-----chHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChh--hhHhHHhhHHHHHHHH
Q 000143 1913 VRKLGERV------------LP-----SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS--QLLSFMDELIPTIRTA 1973 (2058)
Q Consensus 1913 ~~~lg~~~------------l~-----~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~--~l~~~~~~ll~~L~~~ 1973 (2058)
+-+.|.+. +. -++|.+.+. ..+..|-.++.++..++.....- .....+..++..+.+.
T Consensus 271 ~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~---~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~l 347 (435)
T PF03378_consen 271 AIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKV---SGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKL 347 (435)
T ss_dssp HHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG-----SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhc---CCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHH
Confidence 55555442 11 123333322 23456777777888888554321 1123445666666666
Q ss_pred hcC
Q 000143 1974 LCD 1976 (2058)
Q Consensus 1974 L~D 1976 (2058)
+..
T Consensus 348 l~~ 350 (435)
T PF03378_consen 348 LER 350 (435)
T ss_dssp HHT
T ss_pred HcC
Confidence 643
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.88 E-value=16 Score=46.54 Aligned_cols=272 Identities=13% Similarity=0.223 Sum_probs=143.2
Q ss_pred hhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHh--HhccCCc-chHHHHHHHHhhhCCCCHHHHHHHHHhhHhhH
Q 000143 1252 VSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAK--HLAKDDP-KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM 1328 (2058)
Q Consensus 1252 ~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~--~l~~~~p-~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~ 1328 (2058)
...++..+..+++..+.+++ ..=+.++.++|+=-+ +++++.- ....++...+..++ +...-.++.+|+..+.
T Consensus 151 ~~~~L~~l~~lLe~~~l~~~---~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~--~~~lhe~At~cic~ll 225 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDLKSS---DDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLS--DDELHEEATECICALL 225 (559)
T ss_pred HHHHHHHHHHHHhhcCCChh---hHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcc--cchhhHHHHHHHHHHH
Confidence 44556666666666444322 233556666665443 2322210 01234445555555 2233445666665555
Q ss_pred hhccc-----ch-------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh------CccccchhchHHHHHHHHhCC
Q 000143 1329 QSMQD-----EA-------PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF------GISSLKKYGIAATLREGLADR 1390 (2058)
Q Consensus 1329 ~~~~~-----~~-------~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~------g~~~l~~~~il~~L~~~l~~~ 1390 (2058)
+.... .. ...++..+..-...++...+.+-+.-+..+.+.. +++.. ..++..+.-.....
T Consensus 226 ~~~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~--l~~vellLl~~~h~ 303 (559)
T KOG2081|consen 226 YCSLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEF--LRIVELLLLVAGHN 303 (559)
T ss_pred HHhhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc--hhHHHHHHHhccCC
Confidence 43211 01 1223334444444556665555444444443321 11110 12333333333333
Q ss_pred CCHHHHHHHHHHHHHHHHHhc--------ccchhhHHHHHHHHHHHcCCC---------C---HHHHHHHHHHHHHHHHh
Q 000143 1391 NSAKRREGALLAFECLCEKLG--------RLFEPYVIQMLPLLLVAFSDQ---------V---VAVREAAECAARAMMSQ 1450 (2058)
Q Consensus 1391 ~~~~~R~~al~al~~L~~~lg--------~~~~p~l~~llp~Ll~~l~D~---------~---~~VR~aA~~al~~l~~~ 1450 (2058)
++++-+..+..+-.+.+.+- ..|.||..+++..+.....=+ + ..-|....+.+.-+.-.
T Consensus 304 -~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~i 382 (559)
T KOG2081|consen 304 -DTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFI 382 (559)
T ss_pred -chhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHH
Confidence 56666665555555555431 258899999998888755421 1 24577777777666555
Q ss_pred hhhhh-HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1451 LSAQG-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1451 l~~~~-v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
.+... ++...-.+.+ ....|+.-.+++..+..++...+..-...+|.++..+.++ +....+|..++--+|.+.++
T Consensus 383 igs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~~i~nl--p~Q~~~~~ts~ll~g~~~ew 458 (559)
T KOG2081|consen 383 IGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLKLICNL--PEQAPLRYTSILLLGEYSEW 458 (559)
T ss_pred hCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccccchHHHHHHHHhCC--ccchhHHHHHHHHHHHHHHH
Confidence 54432 2333222222 3567999999999999999876654444444444443322 12234999999999999998
Q ss_pred cC-chhH
Q 000143 1530 IK-NPEI 1535 (2058)
Q Consensus 1530 ~~-~~~i 1535 (2058)
+. +|..
T Consensus 459 ~~~~p~~ 465 (559)
T KOG2081|consen 459 VEQHPEL 465 (559)
T ss_pred HHhCcHH
Confidence 75 3443
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=10 Score=56.07 Aligned_cols=313 Identities=12% Similarity=0.132 Sum_probs=167.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh------hH-HhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ------GV-KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQ 1491 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~------~v-~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~ 1491 (2058)
.+-+.+...-..++..|+.-|.+.|++++..+-.. .+ +.++.++...+. ..+..+|...++.+..|......
T Consensus 1137 ~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~ 1216 (1780)
T PLN03076 1137 VLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN 1216 (1780)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence 34444444444556779999999999887654432 12 567777766665 45678999999999999988888
Q ss_pred hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc-C------chhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000143 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-K------NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2058)
Q Consensus 1492 ~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~-~------~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2058)
.+..-.+.|+..+.....|.++.+-..|.+++..+.... + ...+..++..+.+...... ...-++.++..
T Consensus 1217 nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~-~~nISL~AI~l-- 1293 (1780)
T PLN03076 1217 NVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRF-NKDISLNAIAF-- 1293 (1780)
T ss_pred hhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcC-cccccHHHHHH--
Confidence 888888899988888888989888888888888776421 1 0122333333322221110 00011111110
Q ss_pred ccccCChhhHhhHHHHHHHhh-cC--C--CHHHH----HHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHH
Q 000143 1565 FVNTVDAPSLALLVPIVHRGL-RE--R--SAETK----KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635 (2058)
Q Consensus 1565 f~~~~~~~~l~~llp~L~~~L-~d--~--s~~vr----~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~v 1635 (2058)
+..+...+.+.- .. . ..... ............ +.+..+...+.=.++..|..+..|+.++|
T Consensus 1294 ---------L~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~~~lW~pLL~~Ls~l~~D~RlEV 1363 (1780)
T PLN03076 1294 ---------LRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGE-FTDKDDHLYFWFPLLAGLSELSFDPRPEI 1363 (1780)
T ss_pred ---------HHHHHHHHHhccccccccccccccccccccccccccccccc-cccchhHHHHHHHHHHHHHHHhcCCcHHH
Confidence 111112221110 00 0 00000 000000000000 01111212222235555666677999999
Q ss_pred HHHHHHHHHHHHHhhcccC--------ccchHHHHHhhcccC-----------------C------ChHHHhhHHHHHHH
Q 000143 1636 RSVAARAIGSLIRGMGEEN--------FPDLVSWLLDALKSD-----------------N------SNVERSGAAQGLSE 1684 (2058)
Q Consensus 1636 R~~a~~aLg~l~~~lg~~~--------~~~llp~L~~~L~~d-----------------~------~~~~R~~aa~~L~~ 1684 (2058)
|..|...|=.+....|..+ +..++-.+++.++.. . .| .......+|..
T Consensus 1364 R~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~W-l~eT~~~AL~~ 1442 (1780)
T PLN03076 1364 RKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAW-LYETCTLALQL 1442 (1780)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhH-HHHHHHHHHHH
Confidence 9999999888887777652 334454555555321 0 01 12333344444
Q ss_pred HHHHhchh------HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHH-hHHHHHHHHHHhc
Q 000143 1685 VLAALGTV------YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN-YLQQVLPAILDGL 1746 (2058)
Q Consensus 1685 i~~~~g~~------~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~p-yl~~ilp~Ll~~L 1746 (2058)
++.-+..- .++.++..+...++.++..+-.....||..+....|..|.+ ....++..+.+.+
T Consensus 1443 lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf 1511 (1780)
T PLN03076 1443 VVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAA 1511 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 44333321 22333334444455667777777788888888888877643 3444555554443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.66 Score=61.57 Aligned_cols=216 Identities=19% Similarity=0.173 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHhcccchhc-----hHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchH
Q 000143 1753 VRDAALGAGHVLVEHYATTSLPL-----LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2058)
Q Consensus 1753 VR~~a~~al~~lv~~~~~~~l~~-----llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e 1827 (2058)
.|-.|+.-+..+.. +++=++++ ++|.+.+.++......|..-+-....++ . .+.
T Consensus 486 HRlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKIL-----------A--vD~------- 544 (1387)
T KOG1517|consen 486 HRLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKIL-----------A--VDP------- 544 (1387)
T ss_pred HHHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHH-----------h--cCc-------
Confidence 45556666666543 23323322 8999999998877666665443333332 0 000
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhH-HHHHHHHHHHhcCC-CHHHHHHH
Q 000143 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASS-SSERRQVA 1905 (2058)
Q Consensus 1828 ~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l-~~L~~~l~~~L~~~-~~~~R~~A 1905 (2058)
.....|++--|..+|-+++.. -......-|..|.-++..++.+++..-+..+ +.++......+.++ .+-.|+..
T Consensus 545 SCQ~dLvKe~g~~YF~~vL~~----~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~ 620 (1387)
T KOG1517|consen 545 SCQADLVKENGYKYFLQVLDP----SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWL 620 (1387)
T ss_pred hhHHHHHhccCceeEEEEecC----cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHH
Confidence 000112222222222222211 0112345677788899999988775544433 46677777778884 78999999
Q ss_pred HHHHHHHHHHhCcch----hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh---hhhH------------hHHhhH
Q 000143 1906 GRALGELVRKLGERV----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---SQLL------------SFMDEL 1966 (2058)
Q Consensus 1906 ~~~Lg~L~~~lg~~~----l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~---~~l~------------~~~~~l 1966 (2058)
+-|||.|-....+.- -...-..|...+.|+.++||..++.|||.++...+. ++.. --.+..
T Consensus 621 ~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~ 700 (1387)
T KOG1517|consen 621 CICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDL 700 (1387)
T ss_pred HHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHH
Confidence 999999987665331 122334455667889999999999999999876311 1100 012233
Q ss_pred HH----HHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1967 IP----TIRTALCDSILEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1967 l~----~L~~~L~D~d~~VR~~Aa~a~~~l~ 1993 (2058)
+. .+..+++|..+-||...+.++..+.
T Consensus 701 i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 701 IIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred HHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 33 5666789999999999888888775
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.67 E-value=21 Score=46.95 Aligned_cols=199 Identities=19% Similarity=0.166 Sum_probs=115.7
Q ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCC---hhHHHHHHHHHhccccccCChhhHh
Q 000143 1500 IVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN---DHTKYSLDILLQTTFVNTVDAPSLA 1575 (2058)
Q Consensus 1500 Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~---~~vr~al~~L~~~~f~~~~~~~~l~ 1575 (2058)
-++.|+..+.. +-.+=|+.|+.+|+.|+...+......-++.++..+.... +.+..+++++.-. +.
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il-~~--------- 92 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLIL-TS--------- 92 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHH-Hh---------
Confidence 34444443332 3356699999999999987664443444455555554321 2233445544320 00
Q ss_pred hHHHHHHHhhcCCCHHHHH---HHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1576 LLVPIVHRGLRERSAETKK---KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1576 ~llp~L~~~L~d~s~~vr~---~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
.|.++.+-. .+.+.=..++..+... +..+..++..+...+..||..++.-+.++...-|.
T Consensus 93 ----------~dd~~~v~dds~qsdd~g~~iae~fik~-------qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~ 155 (970)
T KOG0946|consen 93 ----------HDDSPEVMDDSTQSDDLGLWIAEQFIKN-------QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPT 155 (970)
T ss_pred ----------cCcchhhcccchhhhHHHHHHHHHHHcC-------chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCH
Confidence 111111111 1222222333322221 23566777777778889999999999999988776
Q ss_pred c------CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh----HHHHhhHHHHHhhccC----ChhHHHHHHH
Q 000143 1653 E------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQ----RASVRDGYLT 1718 (2058)
Q Consensus 1653 ~------~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~----~l~~llp~Ll~~l~~~----~~~vR~~al~ 1718 (2058)
+ .+|.-+..+|+.|. |....+|..+.--|.++.+..+.- .++..+..++..+... ..-|-+-++.
T Consensus 156 e~q~~ll~~P~gIS~lmdlL~-DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ 234 (970)
T KOG0946|consen 156 ELQDALLVSPMGISKLMDLLR-DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLI 234 (970)
T ss_pred HHHHHHHHCchhHHHHHHHHh-hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 5 46778888888887 444458988888888888776642 3455555566555442 3355566666
Q ss_pred HHHHhHHH
Q 000143 1719 LFKYLPRS 1726 (2058)
Q Consensus 1719 ~l~~la~~ 1726 (2058)
.+.++-+.
T Consensus 235 ll~NLLK~ 242 (970)
T KOG0946|consen 235 LLNNLLKN 242 (970)
T ss_pred HHHHHHhh
Confidence 66666553
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=94.63 E-value=18 Score=45.78 Aligned_cols=270 Identities=14% Similarity=0.118 Sum_probs=146.5
Q ss_pred CHHHHHHHHHHHHHHHh------hcCchhHHhHHHHHHhccCCCCh--h-HHHHHHHHHhccccccCChhh-HhhHHHHH
Q 000143 1512 HPKVQSAGQTALQQVGS------VIKNPEIASLVPTLLMGLTDPND--H-TKYSLDILLQTTFVNTVDAPS-LALLVPIV 1581 (2058)
Q Consensus 1512 ~~~VR~aA~~aL~~l~~------~~~~~~i~~lvp~Ll~~l~d~~~--~-vr~al~~L~~~~f~~~~~~~~-l~~llp~L 1581 (2058)
+.++-.+|.++++.|.. .+.+....-++...+..+.+++. . ++.++..+...+|....-... ...++..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l 138 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAAL 138 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHH
Confidence 45666777777776653 22233334477777788877753 2 245677776666665443222 22233333
Q ss_pred HHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHH
Q 000143 1582 HRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2058)
Q Consensus 1582 ~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp 1660 (2058)
...-+ =.+..+-.+...++.++... .|..+..+.+..+|.+...+.+....+|..|....-.+...+|++. .+..
T Consensus 139 ~~i~~~~~s~si~~erL~i~~~ll~q--~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~--~~s~ 214 (372)
T PF12231_consen 139 HNIKNRFPSKSIISERLNIYKRLLSQ--FPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNK--ELSK 214 (372)
T ss_pred HHhhccCCchhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhH--HHHH
Confidence 33222 24455666666677776652 3445556666667777777777788889886666655555666431 1122
Q ss_pred HHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchh---HHHhHHH
Q 000143 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ---FQNYLQQ 1737 (2058)
Q Consensus 1661 ~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~---f~pyl~~ 1737 (2058)
.+.+.+....... .+.+.+.+.+...+.+.+.. ..++..++.+..-+|.. -.+|+..
T Consensus 215 ~~~~~~~~~~~~~------------------~~~~~~~~~L~~mi~~~~~~--~~a~~iW~~~i~LL~~~~~~~w~~~n~ 274 (372)
T PF12231_consen 215 SVLEDLQRSLENG------------------KLIQLYCERLKEMIKSKDEY--KLAMQIWSVVILLLGSSRLDSWEHLNE 274 (372)
T ss_pred HHHHHhccccccc------------------cHHHHHHHHHHHHHhCcCCc--chHHHHHHHHHHHhCCchhhccHhHhH
Confidence 2222222111110 01122333333333331111 12344455444444532 2368889
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc------chhchHHhHhhhcCCC-----CHHHHHHHHHHHHHHHHH
Q 000143 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATT------SLPLLLPAVEDGIFND-----NWRIRQSSVELLGDLLFK 1805 (2058)
Q Consensus 1738 ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~------~l~~llp~L~~~l~d~-----~~~vR~sav~ll~~Ll~~ 1805 (2058)
.+.....++.+.++.+|..|..|.+.++...... .+..+.-.+...+..+ ...+|...+..++.++|.
T Consensus 275 wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 275 WLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 9999999999999999999999999998754332 1222223333323211 125666666666666653
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.69 Score=52.98 Aligned_cols=148 Identities=17% Similarity=0.237 Sum_probs=94.6
Q ss_pred cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHH-----hCCCCHHHHHHHHHHHHHHH
Q 000143 1333 DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-----ADRNSAKRREGALLAFECLC 1407 (2058)
Q Consensus 1333 ~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l-----~~~~~~~~R~~al~al~~L~ 1407 (2058)
.+..-|++.+...|.++.+...|.+|..+|. ...|.. .++|+....+ ++-+|-..-...++.+..+.
T Consensus 193 KELq~YF~kvisal~dEs~~~~r~aAl~sLr---~dsGlh-----QLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL 264 (450)
T COG5095 193 KELQMYFDKVISALLDESDEQTRDAALESLR---NDSGLH-----QLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLL 264 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCccHH-----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 3456678888888877777888888877763 233332 3444444333 22233334444445455555
Q ss_pred HHhcccchhhHHHHHHHHHHHc------CCCCH----HHHHHHHHHHHHHHHhhhhhh--H-HhHHHHHHHhccC--CCh
Q 000143 1408 EKLGRLFEPYVIQMLPLLLVAF------SDQVV----AVREAAECAARAMMSQLSAQG--V-KLVLPSLLKGLED--KAW 1472 (2058)
Q Consensus 1408 ~~lg~~~~p~l~~llp~Ll~~l------~D~~~----~VR~aA~~al~~l~~~l~~~~--v-~~llp~Ll~~L~~--~~~ 1472 (2058)
..-.-.++||+.+++|.++.|+ ++++. .+|+-|+..++.+.++++... + +++...+++.+-| .-.
T Consensus 265 ~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~ 344 (450)
T COG5095 265 KNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTE 344 (450)
T ss_pred cCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhccccc
Confidence 4444567999999999988764 22322 489999999999998888632 2 5666666666544 346
Q ss_pred HHHHHHHHHHHHHHhh
Q 000143 1473 RTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1473 ~~R~~a~~~Lg~la~~ 1488 (2058)
.+..+|+..+..+...
T Consensus 345 sT~YGalkgls~l~ke 360 (450)
T COG5095 345 STQYGALKGLSILSKE 360 (450)
T ss_pred chhhhhhhhhhhhchh
Confidence 6778888877776543
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.42 Score=52.96 Aligned_cols=136 Identities=24% Similarity=0.277 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHH-hcccchhhHHHHHHHH------------HHHcCCCCHHHHHHHHHHHHHHHHhhhhhh-----
Q 000143 1394 KRREGALLAFECLCEK-LGRLFEPYVIQMLPLL------------LVAFSDQVVAVREAAECAARAMMSQLSAQG----- 1455 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~-lg~~~~p~l~~llp~L------------l~~l~D~~~~VR~aA~~al~~l~~~l~~~~----- 1455 (2058)
++|.+|+.++..+++. -++.|-.|...++|.- --.+.|+++.||.+|..++..+.....++-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4799999999999998 4567888888777754 235679999999999999998876543210
Q ss_pred --------------HHhHHH----HHHHhcc-CCChHHHHHHHHHHHHHHhhChhh-H-hhhhhhHHHHHHHHhcCCCHH
Q 000143 1456 --------------VKLVLP----SLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQ-L-SQCLPKIVPKLTEVLTDTHPK 1514 (2058)
Q Consensus 1456 --------------v~~llp----~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~-l-~~~L~~Iip~L~~~L~D~~~~ 1514 (2058)
+-.++- .++..+. +.+...-...++.+..+....|-. + ...++.++..+...+.+.++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 111222 2333344 345566667788888888777632 2 345667777778888888899
Q ss_pred HHHHHHHHHHHHHhh
Q 000143 1515 VQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1515 VR~aA~~aL~~l~~~ 1529 (2058)
||.++..+++.+...
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999988764
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.32 Score=53.21 Aligned_cols=146 Identities=15% Similarity=0.230 Sum_probs=89.2
Q ss_pred hhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCC--hhHHHHHHHHH-hccccccCChh
Q 000143 1497 LPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN--DHTKYSLDILL-QTTFVNTVDAP 1572 (2058)
Q Consensus 1497 L~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~--~~vr~al~~L~-~~~f~~~~~~~ 1572 (2058)
.|++++.+.+.++. .++.+|..+.+++|.+|.. +|+.-..+ .....+.. .....+.+... ........++-
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGAL--DP~~~k~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGAL--DPYKHKSI---QKSLDSKSSENSNDESTDISLPMMGISPSSEEY 82 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcccc--CcHHHhcc---cccCCccccccccccchhhHHhhccCCCchHHH
Confidence 47788888888864 4699999999999999875 44432110 00011000 00000111111 00111112222
Q ss_pred hHhhHHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHh
Q 000143 1573 SLALLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649 (2058)
Q Consensus 1573 ~l~~llp~L~~~L~d~s~-~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~ 1649 (2058)
.....+..+.+.++|.+- .-...+.+++..+.+.++. ...||+++++|.+...+.......|+.....++.++..
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~--~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL--KCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc--CchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 334466777778888653 3344577777777765443 35899999999999999987779999999898888754
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=94.47 E-value=5.4 Score=50.45 Aligned_cols=297 Identities=16% Similarity=0.139 Sum_probs=137.0
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHhhccc-----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh--HH-H
Q 000143 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YF-E 1695 (2058)
Q Consensus 1624 L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~--~l-~ 1695 (2058)
+...+..+++.+...+...+..++.. |.. ..+.++.++.+.+++..+...+..++++++.++..-.-. +. .
T Consensus 106 fl~lL~~~d~~i~~~a~~iLt~l~~~-~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 106 FFNLLNRQDQFIVHMSFSILAKLACF-GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred HHHHHcCCchhHHHHHHHHHHHHHhc-CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 33456667888888999888888742 222 223355666666664333334556677887776432211 11 2
Q ss_pred HhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHhcc
Q 000143 1696 HILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADEN-ESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1696 ~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~-~~VR~~a~~al~~lv~~~~~ 1770 (2058)
+.++.+...++.. +.+..-.++-|+.-+ +|.++....+ ..++|.+...+.+.. +.|-..++.++..++..-..
T Consensus 185 ~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL--SF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 185 DGVPTLVKLLSNATLGFQLQYQSIFCIWLL--TFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred cCHHHHHHHHhhccccHHHHHHHHHHHHHH--hccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 2445555544432 223333333222222 2222222222 458888888877643 44555566666665543211
Q ss_pred cchh-chHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhCh-----hhHHH
Q 000143 1771 TSLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR-----DKRNE 1844 (2058)
Q Consensus 1771 ~~l~-~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~-----~~~~~ 1844 (2058)
.... .+.+.+... .....+..|-. +. -.|+| . . +-...+.+.|.+ ..||+
T Consensus 263 ~~~~~~~~~~mv~~----------~l~~~l~~L~~-------rk----~~Ded-L-~-edl~~L~e~L~~~~k~ltsfD~ 318 (429)
T cd00256 263 REVKKTAALQMVQC----------KVLKTLQSLEQ-------RK----YDDED-L-T-DDLKFLTEELKNSVQDLSSFDE 318 (429)
T ss_pred cchhhhHHHHHHHc----------ChHHHHHHHhc-------CC----CCcHH-H-H-HHHHHHHHHHHHHHHHcCCHHH
Confidence 1000 011111100 00001111100 00 00110 0 0 000111111111 12333
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCc--chhh
Q 000143 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGE--RVLP 1922 (2058)
Q Consensus 1845 vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~--~~l~ 1922 (2058)
....+..+.-+-++. ......|+.=+..+...--+.+..+...+ -.+.++.+-..|+.=+|++++..+. .++.
T Consensus 319 Y~~El~sg~L~WSp~--H~se~FW~EN~~kf~~~~~~llk~L~~iL---~~s~d~~~laVAc~Dige~vr~~P~gr~i~~ 393 (429)
T cd00256 319 YKSELRSGRLHWSPV--HKSEKFWRENADRLNEKNYELLKILIHLL---ETSVDPIILAVACHDIGEYVRHYPRGKDVVE 393 (429)
T ss_pred HHHHHhcCCccCCCC--CCCchHHHHHHHHHHhcchHHHHHHHHHH---hcCCCcceeehhhhhHHHHHHHCccHHHHHH
Confidence 333333221010000 00123455444333222223344444333 1355677778899999999999753 2333
Q ss_pred c--hHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000143 1923 S--IIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2058)
Q Consensus 1923 ~--llp~L~~~l~d~~~~vR~~a~~aL~eii~ 1952 (2058)
+ .-..+.+.++++++++|..|..|+..++.
T Consensus 394 ~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 394 QLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2 33456677889999999999999987764
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.34 E-value=26 Score=49.77 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=103.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCE--KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG 1455 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~--~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~ 1455 (2058)
.++..+.....++..|++|-+++..+....= ..+ .++.....+--.+...+.|.+-.||+.|..++.-++..--...
T Consensus 1526 e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1526 EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence 6666666656666789999998776654432 233 4566677788888899999999999999999988864322222
Q ss_pred HHhHHHHHHHhcc--CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC
Q 000143 1456 VKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1456 v~~llp~Ll~~L~--~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2058)
+............ ..+.-..++|+..+|+++-..|-.+-..+|..+..+....+|+ ..+++++-+++..|-..-.
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhh
Confidence 2212222222222 2344567789999999998888776666666666666666665 6788888888888866443
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.58 Score=57.99 Aligned_cols=151 Identities=21% Similarity=0.299 Sum_probs=88.6
Q ss_pred hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCC
Q 000143 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD 1570 (2058)
Q Consensus 1491 ~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~ 1570 (2058)
+++..|+..|.. .+.+.+...|..|+..|. .++.++.++|.+...+.+.- +..+
T Consensus 174 ~Elq~yf~~It~----a~~~~~~~~r~~aL~sL~------tD~gl~~LlPyf~~fI~~~v---~~n~------------- 227 (343)
T cd08050 174 KELQLYFEEITE----ALVGSNEEKRREALQSLR------TDPGLQQLLPYFVRFIAEGV---TVNL------------- 227 (343)
T ss_pred HHHHHHHHHHHH----HHhCCCHHHHHHHHHHhc------cCCCchhhhhHHHHHHHHHH---Hhhh-------------
Confidence 444455555444 444456677776665543 26778888888887664321 1000
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhh----------CCCCHHHHHHHH
Q 000143 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL----------VDPIPEVRSVAA 1640 (2058)
Q Consensus 1571 ~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l----------~d~~~~vR~~a~ 1640 (2058)
.+ +...-....+++..|.. +..-.+.+|+..++|.++.++ .+..|.+|+.|+
T Consensus 228 ---------------~~-nl~~L~~lm~~v~ALl~--N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA 289 (343)
T cd08050 228 ---------------DQ-NLALLIYLMRMVRALLD--NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAA 289 (343)
T ss_pred ---------------cc-cHHHHHHHHHHHHHHhc--CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHH
Confidence 00 11112222233333333 233567899999999999876 246799999999
Q ss_pred HHHHHHHHhhcccC---ccchHHHHHhhcccCC-ChHHHhhHHHHHHHH
Q 000143 1641 RAIGSLIRGMGEEN---FPDLVSWLLDALKSDN-SNVERSGAAQGLSEV 1685 (2058)
Q Consensus 1641 ~aLg~l~~~lg~~~---~~~llp~L~~~L~~d~-~~~~R~~aa~~L~~i 1685 (2058)
+.++.+++.++..| .+.++..+.+.+.+.. .....-|+..+|+.+
T Consensus 290 ~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 290 RLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999998873 2334444444444332 222366777777654
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=94.21 E-value=4.2 Score=54.89 Aligned_cols=195 Identities=16% Similarity=0.104 Sum_probs=104.9
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh----
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---- 1453 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---- 1453 (2058)
..+.++.+.+.+++-. ..+ +..++..+.......-..++..+.+.+-.....+++.+|..|.-+++.++...-.
T Consensus 357 ~a~~~i~~~i~~~~~~-~~e-a~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~ 434 (574)
T smart00638 357 PALKFIKQWIKNKKIT-PLE-AAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPS 434 (574)
T ss_pred HHHHHHHHHHHcCCCC-HHH-HHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455666666654321 112 2223333333332222344444444433222334778999999999888763321
Q ss_pred ---hhHHhHHHHHHHhcc----CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc---CCCHHHHHHHHHHH
Q 000143 1454 ---QGVKLVLPSLLKGLE----DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT---DTHPKVQSAGQTAL 1523 (2058)
Q Consensus 1454 ---~~v~~llp~Ll~~L~----~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~---D~~~~VR~aA~~aL 1523 (2058)
..+..+++.+.+.+. +.+...+...+.+||++.. +..++.+...+. +....+|.+|++||
T Consensus 435 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 435 CPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred CChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 113556666665553 3455567788999998764 233344444443 34578999999999
Q ss_pred HHHHhhcCchhHHhHHHHHHhccCCCC--hhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHH
Q 000143 1524 QQVGSVIKNPEIASLVPTLLMGLTDPN--DHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595 (2058)
Q Consensus 1524 ~~l~~~~~~~~i~~lvp~Ll~~l~d~~--~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~ 1595 (2058)
..++...... +.+.++....|+. ..+| .|+..+..+ .|+...+-.+....-.|++..|+..
T Consensus 505 r~~a~~~p~~----v~~~l~~i~~n~~e~~EvRiaA~~~lm~t-------~P~~~~l~~ia~~l~~E~~~QV~sf 568 (574)
T smart00638 505 RNLAKRDPRK----VQEVLLPIYLNRAEPPEVRMAAVLVLMET-------KPSVALLQRIAELLNKEPNLQVASF 568 (574)
T ss_pred HHHHHhCchH----HHHHHHHHHcCCCCChHHHHHHHHHHHhc-------CCCHHHHHHHHHHHhhcCcHHHHHH
Confidence 9998754433 3333444444443 3467 566555431 1444434444444445566666543
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.54 Score=58.80 Aligned_cols=150 Identities=20% Similarity=0.292 Sum_probs=92.5
Q ss_pred hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChh--HHHHHHHHHhccccccC
Q 000143 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDH--TKYSLDILLQTTFVNTV 1569 (2058)
Q Consensus 1492 ~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~--vr~al~~L~~~~f~~~~ 1569 (2058)
++.-|+.+|+.. +.+.++.-|+.|+++|.. ++-++.++|.+...+.+.-.. +...+..|.
T Consensus 204 ElQlYy~~It~a----~~g~~~~~r~eAL~sL~T------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~-------- 265 (576)
T KOG2549|consen 204 ELQLYYKEITEA----CTGSDEPLRQEALQSLET------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLI-------- 265 (576)
T ss_pred HHHHHHHHHHHH----HhcCCHHHHHHHHHhhcc------CccHHHHHHHHHHHHhhheeeccccccHHHHH--------
Confidence 344455555544 444678889988887743 677888999988877654211 011111111
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC----------CCCHHHHHHH
Q 000143 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV----------DPIPEVRSVA 1639 (2058)
Q Consensus 1570 ~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~----------d~~~~vR~~a 1639 (2058)
.++. ++-.|.. +..-.+.||+..+||.++.++. |..|.+|.-|
T Consensus 266 ------~lm~-------------------m~rSLl~--Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfA 318 (576)
T KOG2549|consen 266 ------YLMR-------------------MVRSLLD--NPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFA 318 (576)
T ss_pred ------HHHH-------------------HHHHHhc--CCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHH
Confidence 1111 1122221 1224678999999999988754 6789999999
Q ss_pred HHHHHHHHHhhcccCcc---chHHHHHhhcccC-CChHHHhhHHHHHHHHH
Q 000143 1640 ARAIGSLIRGMGEENFP---DLVSWLLDALKSD-NSNVERSGAAQGLSEVL 1686 (2058)
Q Consensus 1640 ~~aLg~l~~~lg~~~~~---~llp~L~~~L~~d-~~~~~R~~aa~~L~~i~ 1686 (2058)
++.+..+++.++..|.. .+...+...+.+. ......-|+..+|.++.
T Consensus 319 A~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 319 ARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 99999999999887533 3444444444433 34445667777776653
|
|
| >PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] | Back alignment and domain information |
|---|
Probab=93.60 E-value=19 Score=46.25 Aligned_cols=188 Identities=16% Similarity=0.185 Sum_probs=109.9
Q ss_pred CchhhhHhhhhHHHHHhh----CC-CCHHHHHHHHHHHHHHHHhhccc-------CccchHHHHHhhcccCCChHHHhhH
Q 000143 1611 KDMIPYIGLLLPEVKKVL----VD-PIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSGA 1678 (2058)
Q Consensus 1611 ~~l~pyl~~ll~~L~~~l----~d-~~~~vR~~a~~aLg~l~~~lg~~-------~~~~llp~L~~~L~~d~~~~~R~~a 1678 (2058)
+++.|+...+++.|...+ .+ .+|.--....+++|.+.+...+. +-+.++|.+...|.+|-.. .--.+
T Consensus 59 e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~E-F~PYv 137 (435)
T PF03378_consen 59 EDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQE-FIPYV 137 (435)
T ss_dssp TTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TT-THHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 456777776666665554 33 47888889999999999865532 2345788887888765433 45677
Q ss_pred HHHHHHHHHHhchh----HHHHhhHHHHHhhcc-CChhHHHHHHHHHHHhHHHhchhHH--HhHHHHHHHHHHhccCCCH
Q 000143 1679 AQGLSEVLAALGTV----YFEHILPDIIRNCSH-QRASVRDGYLTLFKYLPRSLGVQFQ--NYLQQVLPAILDGLADENE 1751 (2058)
Q Consensus 1679 a~~L~~i~~~~g~~----~l~~llp~Ll~~l~~-~~~~vR~~al~~l~~la~~~g~~f~--pyl~~ilp~Ll~~L~d~~~ 1751 (2058)
.+-++.+++..... ....++|.++...-- ....+ .+...++..+....+..+. +++..++..+-+++.....
T Consensus 138 fQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~ 216 (435)
T PF03378_consen 138 FQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAN 216 (435)
T ss_dssp HHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTC
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCc
Confidence 88888888766522 334555655533211 11122 4445555554444444443 5778888888888876542
Q ss_pred HHHHHHHHHHHHHHHHhcccchhchHHhHhhhc-----CCCCHHHHHHHHHHHHHH
Q 000143 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI-----FNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1752 ~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l-----~d~~~~vR~sav~ll~~L 1802 (2058)
+ ..+.+-+..++..+..+.++..++.+...+ ....++.+...+..+.-+
T Consensus 217 D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 217 D--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp H--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred c--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 2 346777888888888777777666665444 344555555555555544
|
CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C. |
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.8 Score=56.40 Aligned_cols=182 Identities=20% Similarity=0.226 Sum_probs=117.6
Q ss_pred HHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC-CCCHHHHH
Q 000143 1360 FGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS-DQVVAVRE 1438 (2058)
Q Consensus 1360 ~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~-D~~~~VR~ 1438 (2058)
.+|..++.++....+ .+.++|.+.+.+.+.+ .--..+-.+-.|+++.. -..|...++|.+...++ -....++-
T Consensus 295 k~Ls~~ip~fp~rv~-~~kiLP~L~~el~n~~---~vp~~LP~v~~i~~~~s--~~~~~~~~~p~l~pi~~~~~~~~~~l 368 (700)
T KOG2137|consen 295 KGLSKLIPTFPARVL-FQKILPTLVAELVNTK---MVPIVLPLVLLIAEGLS--QNEFGPKMLPALKPIYSASDPKQALL 368 (700)
T ss_pred HHHHHhhccCCHHHH-HHhhhhHHHHHhcccc---ccccccchhhhhhhccc--hhhhhhhhhHHHHHHhccCCcccchh
Confidence 344444444432222 3466666666554432 00011112233444433 24566677888877776 33455666
Q ss_pred HHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHH-hcCCCHHHH
Q 000143 1439 AAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEV-LTDTHPKVQ 1516 (2058)
Q Consensus 1439 aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~-L~D~~~~VR 1516 (2058)
.-.+-++.|.+.++++.+ ..++|.|...+++.+-+....++..+..+++..+-.... ..|+|.+.++ +...+..|+
T Consensus 369 ~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk--~~ilP~l~~l~~~tt~~~vk 446 (700)
T KOG2137|consen 369 FILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVK--QAILPRLKNLAFKTTNLYVK 446 (700)
T ss_pred hHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHH--HHHHHHhhcchhcccchHHH
Confidence 667778888888888776 889999999999999999999999999999887644333 3677877765 345678999
Q ss_pred HHHHHHHHHHHhhcCchhH-HhHHHHHHhc-cCCC
Q 000143 1517 SAGQTALQQVGSVIKNPEI-ASLVPTLLMG-LTDP 1549 (2058)
Q Consensus 1517 ~aA~~aL~~l~~~~~~~~i-~~lvp~Ll~~-l~d~ 1549 (2058)
..++-|++.+.+.+....+ +.+.|.+... ..||
T Consensus 447 vn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp 481 (700)
T KOG2137|consen 447 VNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDP 481 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCc
Confidence 9999999999976654433 4444444433 3444
|
|
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=93.60 E-value=15 Score=49.64 Aligned_cols=171 Identities=19% Similarity=0.092 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhc-
Q 000143 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR---NSAKRREGALLAFECLCEKLG- 1411 (2058)
Q Consensus 1336 ~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~---~~~~~R~~al~al~~L~~~lg- 1411 (2058)
...+..+.+.+...+-.. ..++..+..+..... -+...++..+...+.++ .++..|..|+.+++.+.....
T Consensus 356 ~~a~~~i~~~i~~~~~~~--~ea~~~~~~~~~~~~---~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~ 430 (574)
T smart00638 356 PPALKFIKQWIKNKKITP--LEAAQLLAVLPHTAR---YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCV 430 (574)
T ss_pred HHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhh---cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhc
Confidence 345555555555543211 233344443333221 01225666676666543 356789999999999987432
Q ss_pred cc-------chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhcc---CCChHHHHHHHHH
Q 000143 1412 RL-------FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE---DKAWRTKQSSVQL 1481 (2058)
Q Consensus 1412 ~~-------~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~---~~~~~~R~~a~~~ 1481 (2058)
.. .+.++..+...+-.+..+.+...+...+.+|+.+. .+..++.+...+. ......|..|+.+
T Consensus 431 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-------~~~~i~~l~~~l~~~~~~~~~iR~~Av~A 503 (574)
T smart00638 431 NTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG-------HPSSIKVLEPYLEGAEPLSTFIRLAAILA 503 (574)
T ss_pred CCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC-------ChhHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 11 12233333333334444555666677777777553 2233333333333 3356899999999
Q ss_pred HHHHHhhChhhHhhhhhhHHHHHHHHhcC--CCHHHHHHHHHHHHH
Q 000143 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTD--THPKVQSAGQTALQQ 1525 (2058)
Q Consensus 1482 Lg~la~~~p~~l~~~L~~Iip~L~~~L~D--~~~~VR~aA~~aL~~ 1525 (2058)
|..++..+|....+. +...+.| .+++||.+|+..|-.
T Consensus 504 lr~~a~~~p~~v~~~-------l~~i~~n~~e~~EvRiaA~~~lm~ 542 (574)
T smart00638 504 LRNLAKRDPRKVQEV-------LLPIYLNRAEPPEVRMAAVLVLME 542 (574)
T ss_pred HHHHHHhCchHHHHH-------HHHHHcCCCCChHHHHHHHHHHHh
Confidence 999998887765543 3334433 578999999887754
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.68 Score=50.41 Aligned_cols=95 Identities=24% Similarity=0.318 Sum_probs=77.7
Q ss_pred chhhHHHHHHHHHHHcC------------------CCCHHHHHHHHHHHHHHHHhhhhh-hHHhHHHHHHHhccCCChHH
Q 000143 1414 FEPYVIQMLPLLLVAFS------------------DQVVAVREAAECAARAMMSQLSAQ-GVKLVLPSLLKGLEDKAWRT 1474 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~------------------D~~~~VR~aA~~al~~l~~~l~~~-~v~~llp~Ll~~L~~~~~~~ 1474 (2058)
+.|++.+++|.++.-.. |+.-.+|.+|.+++..+....... .+..++..+..++.| +..+
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DI 81 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDI 81 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHH
Confidence 45777888888886443 445689999999999998865543 357788899999999 9999
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc
Q 000143 1475 KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT 1509 (2058)
Q Consensus 1475 R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~ 1509 (2058)
|..+...+..++..+|..+...+..+++.+...++
T Consensus 82 k~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 82 KMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999888874
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG2137 consensus Protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.00 E-value=3.1 Score=54.29 Aligned_cols=130 Identities=14% Similarity=0.198 Sum_probs=92.6
Q ss_pred hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC-ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHH
Q 000143 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF 1694 (2058)
Q Consensus 1616 yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~-~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l 1694 (2058)
+.+.++|.|...++|.+..+++.+.+.++.+++.+.... -..++|.+...........++..++.|++.+++.+..-..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~~v 465 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKAAV 465 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 466789999999999999999999999999998876442 3468888877655556666888899999999877665544
Q ss_pred HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHh--chhHHHhHHHHHHHHHHhcc
Q 000143 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL--GVQFQNYLQQVLPAILDGLA 1747 (2058)
Q Consensus 1695 ~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~--g~~f~pyl~~ilp~Ll~~L~ 1747 (2058)
-+.++.+....+..++.+..+.+.++..++... |.++ ....++|.+.....
T Consensus 466 ~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev--~~~~VlPlli~ls~ 518 (700)
T KOG2137|consen 466 LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEV--MAENVLPLLIPLSV 518 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceee--ehhhhhhhhhhhhh
Confidence 344445666666778888877777776665433 2222 33456666665443
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.86 E-value=96 Score=48.35 Aligned_cols=285 Identities=16% Similarity=0.196 Sum_probs=147.8
Q ss_pred hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHh----hccc-------CccchHHHHHhhcccCCChHHHhhHHHHHHHHHH
Q 000143 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRG----MGEE-------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2058)
Q Consensus 1619 ~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~----lg~~-------~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~ 1687 (2058)
.+++++...+...+.+++..+..++..+-.. +|.. .+..+++.+.+... ++.+-.|.+...+++-++.
T Consensus 984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy-~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCY-DSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhc-cHhHHHHcCCCceeeeehh
Confidence 3678888889888999999999999887764 3422 23344444444333 4556567777777666555
Q ss_pred HhchhH----HHHhhHHHHHhhccC-----C---hhHHHHHHHHHHHhHHHhch--hHHHhHHHHHHHHHHhccCCCHHH
Q 000143 1688 ALGTVY----FEHILPDIIRNCSHQ-----R---ASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADENESV 1753 (2058)
Q Consensus 1688 ~~g~~~----l~~llp~Ll~~l~~~-----~---~~vR~~al~~l~~la~~~g~--~f~pyl~~ilp~Ll~~L~d~~~~V 1753 (2058)
.+.... ...++..++..+.+. + ..++...+..+.......+. .=......++.++...+.++++.|
T Consensus 1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 544221 133444444444432 1 12233333333222222111 111344567788888899999999
Q ss_pred HHHHHHHHHHHHHHhcccchhchHHhHhhhc----C-CCC-HHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchH
Q 000143 1754 RDAALGAGHVLVEHYATTSLPLLLPAVEDGI----F-NDN-WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2058)
Q Consensus 1754 R~~a~~al~~lv~~~~~~~l~~llp~L~~~l----~-d~~-~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e 1827 (2058)
|+.+...+..+.+..+....+.+.| +.+.+ + .+. -.-|...+..+...-|+..-. +..++ -+++.+...
T Consensus 1143 R~~~~~~L~~i~~~s~~~v~~L~~p-~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~--p~~f~--~~~~l~~l~ 1217 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGKSVVKLLEP-FKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLG--PCLFD--FTEELYRLK 1217 (3550)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHH-HHHHHhccccccccccCCHHHHhhhHHHHHHHHHcC--CcccC--chHHHHHHH
Confidence 9999999999998886554443333 22222 1 010 001111222222222332210 00000 000000000
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHhh----cCCCHHHHHHHHHHHHHHHhhCh---hhHHHhHHHHHHHHHHHhcCCCHH
Q 000143 1828 AHGRAIIEVLGRDKRNEVLAALYMVR----SDVSLSVRQAALHVWKTIVANTP---KTLKEIMPVLMNTLISSLASSSSE 1900 (2058)
Q Consensus 1828 ~~~~~l~~~Lg~~~~~~vL~~L~~~~----~D~~~~VR~aA~~~l~~lv~~~~---~~l~~~l~~L~~~l~~~L~~~~~~ 1900 (2058)
. .+....+.+..+ ...+.... .....-.|.++.+.+.......+ ....++-+.++..+.+.+..+..+
T Consensus 1218 ~---~~~~La~~~~~~--~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~E 1292 (3550)
T KOG0889|consen 1218 R---FLIALADAEEDE--LATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSE 1292 (3550)
T ss_pred H---HHHHhhhhhhhh--hhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHH
Confidence 0 111111111111 11122221 11133457888888777665433 244567788888888899999999
Q ss_pred HHHHHHHHHHHHHH
Q 000143 1901 RRQVAGRALGELVR 1914 (2058)
Q Consensus 1901 ~R~~A~~~Lg~L~~ 1914 (2058)
.-..+..++-.+..
T Consensus 1293 i~~~~~~~l~~v~~ 1306 (3550)
T KOG0889|consen 1293 LIEVALEGLRKVLA 1306 (3550)
T ss_pred HHHHHHHHHHhhhh
Confidence 98888888765543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.82 E-value=1.4 Score=58.78 Aligned_cols=148 Identities=20% Similarity=0.297 Sum_probs=96.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHH-HHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhC--cc-h-
Q 000143 1849 LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV-LMNTLISSLAS---SSSERRQVAGRALGELVRKLG--ER-V- 1920 (2058)
Q Consensus 1849 L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~-L~~~l~~~L~~---~~~~~R~~A~~~Lg~L~~~lg--~~-~- 1920 (2058)
.++.++.+...+|..-+-+|..+...-+..-.+.+.. .-...+..+.+ -+.+.|.+|+..|+.+++.+. .. .
T Consensus 517 VLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl 596 (1387)
T KOG1517|consen 517 VLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACL 596 (1387)
T ss_pred HHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhc
Confidence 3344556666677777777777765333221121111 00000011222 246999999999999998754 22 2
Q ss_pred hhchHHHHhhhcCCC-ChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000143 1921 LPSIIPILSRGLKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1921 l~~llp~L~~~l~d~-~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
-..++.+....++|+ .+-.||-+|++||.+-+......+...-+..-..|...+.|+-++||-+|..|+|.+..+.
T Consensus 597 ~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 597 NGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred cccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 357777777888874 6889999999999988776554333222344556777889999999999999999998753
|
|
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.43 E-value=45 Score=43.53 Aligned_cols=288 Identities=15% Similarity=0.096 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCC
Q 000143 1352 YGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD 1431 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D 1431 (2058)
-..|..|+..+...++.+....+. .+-......+..++....|++++..+..+.+.-+.....-=......+...-.|
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~--~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~ 81 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIE--EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND 81 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHH--HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence 456777777777777766554332 344444455555556677888888777777654321111111111112111222
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCC---------------------------ChHHHHHHHHHHHH
Q 000143 1432 QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK---------------------------AWRTKQSSVQLLGA 1484 (2058)
Q Consensus 1432 ~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~---------------------------~~~~R~~a~~~Lg~ 1484 (2058)
++-..|-.|..+|..=++.+.. ....+.|.+...+..- +.+.=..-+..+..
T Consensus 82 ~d~~~~l~aL~~LT~~Grdi~~-~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n 160 (464)
T PF11864_consen 82 DDFDLRLEALIALTDNGRDIDF-FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN 160 (464)
T ss_pred hhHHHHHHHHHHHHcCCcCchh-cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence 2333344444433322222211 0123333333222110 00000112233333
Q ss_pred HHhhChhhH-hhhhhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh--cCchhHHhHHHHHHhccCCC--ChhHHHHHH
Q 000143 1485 MAYCAPQQL-SQCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSV--IKNPEIASLVPTLLMGLTDP--NDHTKYSLD 1558 (2058)
Q Consensus 1485 la~~~p~~l-~~~L~~Iip~L~~~L~D~-~~~VR~aA~~aL~~l~~~--~~~~~i~~lvp~Ll~~l~d~--~~~vr~al~ 1558 (2058)
+.+.....+ ...+..++..+...+..+ ++..=++++..+..+... +++..+..++..|.....-. .+..-.++.
T Consensus 161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~ 240 (464)
T PF11864_consen 161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMR 240 (464)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHH
Confidence 332221111 123345555555554332 333336677777776552 34455667777776654332 112223455
Q ss_pred HHHhccccccCChhhHhhHHHHHHHhhc------CCCHHHHHHHHHHHHHHHhhhCCCCchhhh--Hh--hhhHHHHHhh
Q 000143 1559 ILLQTTFVNTVDAPSLALLVPIVHRGLR------ERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IG--LLLPEVKKVL 1628 (2058)
Q Consensus 1559 ~L~~~~f~~~~~~~~l~~llp~L~~~L~------d~s~~vr~~A~~~l~~L~~~l~~~~~l~py--l~--~ll~~L~~~l 1628 (2058)
.|..... -...+..+...+. .++..+-+.|..+++.+.-. ..++-.|- .. .++|.+..++
T Consensus 241 nL~~S~~--------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~--~~~~~~~~l~~~~~~vl~sl~~al 310 (464)
T PF11864_consen 241 NLLKSHL--------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWG--SGEQGYPSLPFSPSSVLPSLLNAL 310 (464)
T ss_pred HHHcCcc--------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhc--cccCCcceecccHHHHHHHHHHHH
Confidence 5443111 1123334444441 24556667788888776542 21111111 22 3889999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-Hhhcc
Q 000143 1629 VDPIPEVRSVAARAIGSLI-RGMGE 1652 (2058)
Q Consensus 1629 ~d~~~~vR~~a~~aLg~l~-~~lg~ 1652 (2058)
...++.|-......+..+. ..+|.
T Consensus 311 ~~~~~~v~~eIl~~i~~ll~~~~~~ 335 (464)
T PF11864_consen 311 KSNSPRVDYEILLLINRLLDGKYGR 335 (464)
T ss_pred hCCCCeehHHHHHHHHHHHhHhhhh
Confidence 8776666555555555555 44443
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.32 E-value=7.4 Score=50.06 Aligned_cols=142 Identities=19% Similarity=0.216 Sum_probs=102.4
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhCh-----hhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc---
Q 000143 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTP-----KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--- 1919 (2058)
Q Consensus 1848 ~L~~~~~D~~~~VR~aA~~~l~~lv~~~~-----~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~--- 1919 (2058)
-+|+.+.-.+..||..|..++-.+.+-.+ .....++..-+..+...|.|+.+.+|..|...+..+....-+-
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 45666788889999999988876654322 2233445555555667789999999999999888877665433
Q ss_pred -hhhchHHHHhhhc-CCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000143 1920 -VLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTL 1992 (2058)
Q Consensus 1920 -~l~~llp~L~~~l-~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l 1992 (2058)
++.+++..+..-+ .|...++|..+..++.+++.. + +-.+.++.++|.+...+.|+...||-++...+-.+
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p-~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--P-LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--c-cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 3444554444433 356679999999999987753 2 23456788999999999999999999987776554
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=92.32 E-value=26 Score=42.63 Aligned_cols=193 Identities=18% Similarity=0.165 Sum_probs=131.0
Q ss_pred hHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHH----HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHH
Q 000143 1658 LVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2058)
Q Consensus 1658 llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l----~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~p 1733 (2058)
+-..|-+.|...-...+-..|......+.+.+|.+.+ .-+.|.++..+....-.||...+..+...-..+|..+.|
T Consensus 55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p 134 (307)
T PF04118_consen 55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRP 134 (307)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHH
Confidence 4445666666444455677788888888888888754 335677777777778899999999998777788889999
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccc
Q 000143 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKA 1813 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~ 1813 (2058)
.+..++..++.++.|+..++.+.+...+..+...++.+. +...+...+- .+..+|..++..+..-+.+..+
T Consensus 135 ~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~---F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~----- 205 (307)
T PF04118_consen 135 CLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKY---FWQCLWLCII-TSPSRRLGALNYLLRRLPKFQN----- 205 (307)
T ss_pred HHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhH---HHHHHHHHHh-cCcchhHHHHHHHHHhCCcccc-----
Confidence 999999999999999998899989888888877776652 3344433332 3567888887766554311100
Q ss_pred cccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000143 1814 LLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKT 1870 (2058)
Q Consensus 1814 ~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~ 1870 (2058)
+...... ......+|++. .-++.++..++.|.+..|++.+++.+-.
T Consensus 206 ------~~~~~~~----~~~~~~~~~~~-~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 206 ------DELSLSS----EEQEYCLGPDP-GLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred ------cccccch----HHHHHhcCCCc-cHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 0000000 11122333221 2456677788889988898888877644
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.4 Score=44.61 Aligned_cols=85 Identities=20% Similarity=0.254 Sum_probs=65.6
Q ss_pred chHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 000143 1378 GIAATLREGLAD---RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1378 ~il~~L~~~l~~---~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
.++..+...+.| +++...|..++.+++.+.+..|..+.++.++++..+...+..+ .+|..|.+++..++..++.+
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~ 88 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE 88 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence 455566666665 5577889999999999999666667777777777777777664 89999999999999999988
Q ss_pred hHHhHHHHHH
Q 000143 1455 GVKLVLPSLL 1464 (2058)
Q Consensus 1455 ~v~~llp~Ll 1464 (2058)
.+..+++..+
T Consensus 89 ~l~~ll~~~~ 98 (107)
T PF08064_consen 89 DLGPLLDQIF 98 (107)
T ss_pred HHHHHHHHHH
Confidence 7766655543
|
; GO: 0004674 protein serine/threonine kinase activity |
| >KOG1851 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.80 E-value=83 Score=45.18 Aligned_cols=144 Identities=13% Similarity=0.058 Sum_probs=81.2
Q ss_pred hhhHHHHH-hhCCCCHHHHHHHHHHHHHHHH--hhc--ccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhH
Q 000143 1619 LLLPEVKK-VLVDPIPEVRSVAARAIGSLIR--GMG--EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693 (2058)
Q Consensus 1619 ~ll~~L~~-~l~d~~~~vR~~a~~aLg~l~~--~lg--~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~ 1693 (2058)
.++..+.. ...+..|.+|.++.+-+..++- .++ +...+++-..+...+. |.+..+|..++.+|+.+..+--...
T Consensus 1526 e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~-D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1526 EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLN-DDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHc-chHHHHHHHHHHHHHHHHhcccccc
Confidence 44455553 3446789999998887776653 222 2234566665655555 5555699999999998876532221
Q ss_pred HHHhhHHHHHhhcc--CChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000143 1694 FEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1694 l~~llp~Ll~~l~~--~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~l 1764 (2058)
.............. .+....-+++..+|.+...++-.+--++++.+-.+-....++ ..++.++.+++..+
T Consensus 1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseF 1676 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEF 1676 (1710)
T ss_pred chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHH
Confidence 11111111111111 133445677888888888876544334444444444444444 45677666666554
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=91.78 E-value=6 Score=53.97 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHHHhhhCCC------------CchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCcc
Q 000143 1589 SAETKKKAAQIVGNMCSLVTEP------------KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFP 1656 (2058)
Q Consensus 1589 s~~vr~~A~~~l~~L~~~l~~~------------~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~ 1656 (2058)
+..++..|.-.++.+....... .....|.+.+...+.......+.+.+..+++|||.++. +
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-------~ 520 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-------P 520 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT--------G
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-------c
Confidence 4566666666666665432221 22233455555555555667777888999999998863 5
Q ss_pred chHHHHHhhcccC--CChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHH
Q 000143 1657 DLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1657 ~llp~L~~~L~~d--~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
..++.+...+..+ ....+|..|+++|..+...+. +.+.+.++..+.+. +.++|.+++..+-.--
T Consensus 521 ~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~-------- 588 (618)
T PF01347_consen 521 ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP----EKVREILLPIFMNTTEDPEVRIAAYLILMRCN-------- 588 (618)
T ss_dssp GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---------
T ss_pred hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc----HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC--------
Confidence 6777777777644 356688888888876533322 23344444444443 6789988876664321
Q ss_pred HhHHHHHHHHHHhc-cCCCHHHHHHHHHHH
Q 000143 1733 NYLQQVLPAILDGL-ADENESVRDAALGAG 1761 (2058)
Q Consensus 1733 pyl~~ilp~Ll~~L-~d~~~~VR~~a~~al 1761 (2058)
|- ..++..+...+ .+++..|+......+
T Consensus 589 P~-~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 589 PS-PSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp ---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 11 12334444444 455667766555443
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >KOG1822 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.66 E-value=94 Score=45.54 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcch-hhchHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhhHhHHh
Q 000143 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERV-LPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964 (2058)
Q Consensus 1887 ~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~-l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~ 1964 (2058)
...+...+..+++..|..+.++++.++...+... ...+...+.+-+. .+++..|.+...++|.+.+..|.-.-.+++.
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 3445566788999999999999999999988763 4555555555554 4578899999999998888776544456677
Q ss_pred hHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHhChh---hHHHHHHHHHHhc
Q 000143 1965 ELIPTIRTALCDSIL-EVRESAGLAFSTLFKSAGMQ---AIDEIVPTLLHAL 2012 (2058)
Q Consensus 1965 ~ll~~L~~~L~D~d~-~VR~~Aa~a~~~l~~~~g~~---~~~~ilp~Ll~~L 2012 (2058)
+-+..+.....|+.+ .|+..+..++..+....|+- +++..+--++..|
T Consensus 958 t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lL 1009 (2067)
T KOG1822|consen 958 TSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLL 1009 (2067)
T ss_pred cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHc
Confidence 777788888888765 99999999999988776653 3444444444444
|
|
| >COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=91.41 E-value=3.3 Score=47.68 Aligned_cols=79 Identities=20% Similarity=0.290 Sum_probs=48.8
Q ss_pred HHHhhChhhHHHhHHHHHHHHHHH-----hcCC-----CHHHHHHHHHHHHHHHHHhCcch---hhchHHHHhhhcCCC-
Q 000143 1870 TIVANTPKTLKEIMPVLMNTLISS-----LASS-----SSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDP- 1935 (2058)
Q Consensus 1870 ~lv~~~~~~l~~~l~~L~~~l~~~-----L~~~-----~~~~R~~A~~~Lg~L~~~lg~~~---l~~llp~L~~~l~d~- 1935 (2058)
.+..|..-.+.+|+.+++|.++.+ +++. .+.+|..|+..++.++..++..+ -|.+..++.+.+-|.
T Consensus 262 sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~ 341 (450)
T COG5095 262 SLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDRE 341 (450)
T ss_pred HHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcc
Confidence 334444333445555555555543 3333 24589999999999999988653 366666666554333
Q ss_pred -ChhHHHHHHHHHH
Q 000143 1936 -SASRRQGVCIGLS 1948 (2058)
Q Consensus 1936 -~~~vR~~a~~aL~ 1948 (2058)
......|+..++.
T Consensus 342 k~~sT~YGalkgls 355 (450)
T COG5095 342 KTESTQYGALKGLS 355 (450)
T ss_pred cccchhhhhhhhhh
Confidence 2346678888776
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=91.37 E-value=2.3 Score=43.07 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCcc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHH
Q 000143 1896 SSSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRT 1972 (2058)
Q Consensus 1896 ~~~~~~R~~A~~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~ 1972 (2058)
......|..+.++++++++..|+. +.|+++-.|...+..+ +.|..++.+...++..++.+.+.+++++++..+.+
T Consensus 26 ~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 26 KKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 367888999999999999944433 3566766676666544 78999999999999999999899888888887776
Q ss_pred Hh
Q 000143 1973 AL 1974 (2058)
Q Consensus 1973 ~L 1974 (2058)
..
T Consensus 104 ~~ 105 (107)
T PF08064_consen 104 LW 105 (107)
T ss_pred hc
Confidence 54
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=91.22 E-value=65 Score=42.83 Aligned_cols=179 Identities=18% Similarity=0.247 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHhhChhhH--hhhhhhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhcCch-hH--HhHHHHHHhcc
Q 000143 1473 RTKQSSVQLLGAMAYCAPQQL--SQCLPKIVPKLTEVLTDTHP-KVQSAGQTALQQVGSVIKNP-EI--ASLVPTLLMGL 1546 (2058)
Q Consensus 1473 ~~R~~a~~~Lg~la~~~p~~l--~~~L~~Iip~L~~~L~D~~~-~VR~aA~~aL~~l~~~~~~~-~i--~~lvp~Ll~~l 1546 (2058)
..+..|+..|..++. ++++ .+.+-.-+|.+.+.+..... .+-..|.++|..++..-..+ .+ ...++.+.+.+
T Consensus 72 ~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 72 EYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEII 149 (543)
T ss_pred HHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHH
Confidence 345567888887775 3333 35556778888888876665 88889999999998432211 22 34667777766
Q ss_pred CCCChhHHHHHHHHHhc--ccc--c-cCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC-C---CchhhhH
Q 000143 1547 TDPNDHTKYSLDILLQT--TFV--N-TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE-P---KDMIPYI 1617 (2058)
Q Consensus 1547 ~d~~~~vr~al~~L~~~--~f~--~-~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~-~---~~l~pyl 1617 (2058)
.+.......++..+... ... . ......+..+++.+.+.+.......+-..+..++.+-..... + ..-..+.
T Consensus 150 ~~~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~ 229 (543)
T PF05536_consen 150 PNQSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWL 229 (543)
T ss_pred HhCcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhH
Confidence 65333333455544431 111 0 112233445667777777665556777888888887654310 0 1123366
Q ss_pred hhhhHHHHHhhCC-CCHHHHHHHHHHHHHHHHhhccc
Q 000143 1618 GLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1618 ~~ll~~L~~~l~d-~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
+.+..++..++.+ ..+.-|..+....+.+.+..|.+
T Consensus 230 ~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 230 SDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 7778888888775 46788999999999999999876
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=91.17 E-value=2.8 Score=50.63 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=98.2
Q ss_pred CCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC---------ccchHHHHHhhcc-------cCCCh
Q 000143 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN---------FPDLVSWLLDALK-------SDNSN 1672 (2058)
Q Consensus 1609 ~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~---------~~~llp~L~~~L~-------~d~~~ 1672 (2058)
+...+..+.+-++|.++.+++|.++.+|..++.++..+...++... .+-+-+.+...+. .+++.
T Consensus 109 ~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~ 188 (282)
T PF10521_consen 109 DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESL 188 (282)
T ss_pred CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhH
Confidence 4456778899999999999999999999999999999998766443 2223333333332 12222
Q ss_pred HHHhhHHHHHHHHHHHhc---h----hHHHHhhHH-HHHhhcc----CChhHHHHHHHHHHHhHHHhchhHHHhHHHHHH
Q 000143 1673 VERSGAAQGLSEVLAALG---T----VYFEHILPD-IIRNCSH----QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740 (2058)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~g---~----~~l~~llp~-Ll~~l~~----~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp 1740 (2058)
..-..+..++-.++.... . ..+.+++.. ++..+.. +.+.++...+..+..+...+|.....|+..++|
T Consensus 189 ~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~ 268 (282)
T PF10521_consen 189 ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIP 268 (282)
T ss_pred HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223344455555544321 1 123444433 5555543 248899999999999999999999999999999
Q ss_pred HHHHhccCCC
Q 000143 1741 AILDGLADEN 1750 (2058)
Q Consensus 1741 ~Ll~~L~d~~ 1750 (2058)
.+.+.+.+++
T Consensus 269 ~l~~~l~npf 278 (282)
T PF10521_consen 269 VLSQILENPF 278 (282)
T ss_pred HHHHHhcCCC
Confidence 9999888765
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.11 E-value=8 Score=46.78 Aligned_cols=174 Identities=20% Similarity=0.213 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc---hh-hchHHHHhhhcC
Q 000143 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER---VL-PSIIPILSRGLK 1933 (2058)
Q Consensus 1858 ~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~---~l-~~llp~L~~~l~ 1933 (2058)
..-+..|.+-+..++++......-+--..+..++..+.+++.++|..|++.+|..++.-... ++ ...++.|...++
T Consensus 97 le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 97 LEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS 176 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc
Confidence 34455666666666665432221111122334445789999999999999999999764321 22 246667777676
Q ss_pred CCC-hhHHHHHHHHHHHHHHhhChhhhHhHH-hhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhChh---hHHHHHH
Q 000143 1934 DPS-ASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCD--SILEVRESAGLAFSTLFKSAGMQ---AIDEIVP 2006 (2058)
Q Consensus 1934 d~~-~~vR~~a~~aL~eii~~~~~~~l~~~~-~~ll~~L~~~L~D--~d~~VR~~Aa~a~~~l~~~~g~~---~~~~ilp 2006 (2058)
.++ ..+|..+.+|++.++....+.. ..|. -.=+..|++++.+ .+...+.-|..-++.+.+..... .-+...+
T Consensus 177 ~~~~~~~r~kaL~AissLIRn~~~g~-~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~ 255 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRNNKPGQ-DEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ 255 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhcCcHHH-HHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence 444 4577899999999998876532 2222 1125678888877 45556667777777776543211 1112233
Q ss_pred HHHHhcCC---CcchHHHHHHHHHHHhhc
Q 000143 2007 TLLHALED---DQTSDTALDGLKQILSVR 2032 (2058)
Q Consensus 2007 ~Ll~~L~~---~~~~~~al~aL~~i~~~~ 2032 (2058)
..+..+.+ .+.++.++.++...+...
T Consensus 256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 256 RVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 33333322 234677888877766543
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.91 E-value=4.1 Score=49.16 Aligned_cols=137 Identities=18% Similarity=0.113 Sum_probs=95.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH----HhHHHHHHHh
Q 000143 1391 NSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKG 1466 (2058)
Q Consensus 1391 ~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v----~~llp~Ll~~ 1466 (2058)
.+...|+.|+.-+..+++.+.....=.--.-+..++..+++.+..+|..|++.++.++.+.+..+. ...++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 477889999999999988766311111112334444599999999999999999999999887542 4578888888
Q ss_pred ccCC-ChHHHHHHHHHHHHHHhhChhhHhhhh--hhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHh
Q 000143 1467 LEDK-AWRTKQSSVQLLGAMAYCAPQQLSQCL--PKIVPKLTEVLTD--THPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1467 L~~~-~~~~R~~a~~~Lg~la~~~p~~l~~~L--~~Iip~L~~~L~D--~~~~VR~aA~~aL~~l~~ 1528 (2058)
+..+ .-.+|..|+-+++.+....+......+ .. ...|..++++ .+.+.+..+..-++.+..
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 8744 456778899999999987665433321 22 4456677776 456666666666666654
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.84 E-value=64 Score=42.13 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=76.5
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcch-
Q 000143 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP-VLMNTLISSLASSSSERRQVAGRALGELVRKLGERV- 1920 (2058)
Q Consensus 1843 ~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~-~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~- 1920 (2058)
+.+...+.....|+...|..++++++..+|-.++.--..++. ..++.+.+.+.++++..|+.+.+.|-.++-...+..
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k 497 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK 497 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH
Confidence 345566666678999999999999999998765533223332 456667777899999999999999998875544332
Q ss_pred ---hhch-HHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000143 1921 ---LPSI-IPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2058)
Q Consensus 1921 ---l~~l-lp~L~~~l~d~~~~vR~~a~~aL~eii~ 1952 (2058)
+..+ ...+....+|+++.+..++..-+..+.-
T Consensus 498 ~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 498 FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 1222 2335556789999998887776665543
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=90.77 E-value=2.7 Score=46.37 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=95.2
Q ss_pred hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCc----cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch
Q 000143 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF----PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2058)
Q Consensus 1616 yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~----~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~ 1691 (2058)
-++.++..+..++.+++++-|-.+..-++.+++..|.+.| ...+..++..|+..+....+..+..+++.+....+.
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4566777888889999999999999999999988776633 456666777777766666788888888888766543
Q ss_pred h----------HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc
Q 000143 1692 V----------YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2058)
Q Consensus 1692 ~----------~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L 1746 (2058)
. .+..+++.++...++ ....+.++.++..+...+...|.||..++-..+...+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 2 234455555555544 5677788888888888888888888887776666543
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=90.61 E-value=1.6 Score=42.66 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=63.4
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHH
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lv 1539 (2058)
+...+..+.|+...+|..++..|..+..... ......+.++..+...+.|+++-|--+|+++|..++...++ .++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~----~vl 79 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD----EVL 79 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH----HHH
Confidence 3445566777778888888888888887654 23345678888899999999999999999999999987653 455
Q ss_pred HHHHhccCCC
Q 000143 1540 PTLLMGLTDP 1549 (2058)
Q Consensus 1540 p~Ll~~l~d~ 1549 (2058)
|.|++...|+
T Consensus 80 ~~L~~~y~~~ 89 (92)
T PF10363_consen 80 PILLDEYADP 89 (92)
T ss_pred HHHHHHHhCc
Confidence 6666555444
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=90.58 E-value=24 Score=42.82 Aligned_cols=178 Identities=15% Similarity=0.196 Sum_probs=125.0
Q ss_pred HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhhhhhH----HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHh
Q 000143 1420 QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~-~~~VR~aA~~al~~l~~~l~~~~v----~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~ 1494 (2058)
.+-..+-.|++-. -..|-..|.+.-..+.+.++++.+ ....|-++..+....-.+|..-+..+....-..+..+.
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~ 133 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALR 133 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHH
Confidence 4445555566543 347899999999999999998876 45567778888888888998888888877766667899
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhccCCCChhHH-HHHHHHHhc--ccc----
Q 000143 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTK-YSLDILLQT--TFV---- 1566 (2058)
Q Consensus 1495 ~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-~~lvp~Ll~~l~d~~~~vr-~al~~L~~~--~f~---- 1566 (2058)
+.++.++..+...+.|.+.++...+...+..+...+++.++ +.+.-.++ ..| ..| .|+.-+... .+.
T Consensus 134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii---~sp--~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII---TSP--SRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh---cCc--chhHHHHHHHHHhCCccccccc
Confidence 99999999999999999999999999999999998887633 44333333 222 334 344433320 111
Q ss_pred -------ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000143 1567 -------NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2058)
Q Consensus 1567 -------~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~ 1602 (2058)
...-.+....++..+..+++|.+.-|++.+.+.+-.
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 001123345577778888888888888876665543
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=90.10 E-value=2.6 Score=42.54 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=64.2
Q ss_pred chHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 000143 1378 GIAATLREGLADRN---SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~---~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
.++..+...+.|.+ +...|..++.+++.+.+..|..+..+.++++..|...+.. +..|..|.+|+..++..++.+
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHH
Confidence 45555666665543 5677899999999999988877777777887777777764 569999999999999999887
Q ss_pred hHHhHHHHH
Q 000143 1455 GVKLVLPSL 1463 (2058)
Q Consensus 1455 ~v~~llp~L 1463 (2058)
.+..++...
T Consensus 89 ~l~~ll~~~ 97 (107)
T smart00802 89 ELGPLLDQI 97 (107)
T ss_pred HHHHHHHHH
Confidence 765544433
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=90.02 E-value=24 Score=49.51 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=56.2
Q ss_pred chHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000143 1923 SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1923 ~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
.++.+|.+.|++.+-.+-.++|.+|..+......++-.-+-..-++.++.++...+..+-.-++.|+-.+..+-
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 45667777788877778889999999988877655321222567889999999999998888888888876443
|
|
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.71 E-value=91 Score=42.14 Aligned_cols=366 Identities=14% Similarity=0.137 Sum_probs=195.3
Q ss_pred HhhhhHHHHHhhCCCC-----HHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccC----CChHHHhhHHHHHHHHHH
Q 000143 1617 IGLLLPEVKKVLVDPI-----PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD----NSNVERSGAAQGLSEVLA 1687 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~~-----~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d----~~~~~R~~aa~~L~~i~~ 1687 (2058)
+..++..+-+++.|.+ |..-+++.-++..+++.+|..+ ...+|.+++...+- .+...-..+...+|..+.
T Consensus 460 l~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~-~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~ 538 (982)
T KOG2022|consen 460 LDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETE-STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSN 538 (982)
T ss_pred HHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcch-hHHHHHHHHhccccccccCChhHHHHHHHHHHHHHH
Confidence 4455666666666554 7778888999999999998763 34577777776432 123233445667787777
Q ss_pred Hhchh--HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCC--HHHHHHHHHHHHH
Q 000143 1688 ALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN--ESVRDAALGAGHV 1763 (2058)
Q Consensus 1688 ~~g~~--~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~--~~VR~~a~~al~~ 1763 (2058)
.+|.+ ++...+|.+++.+..+.. -..+...+..+++....++.||...++..+...+...+ +..|...+++++.
T Consensus 539 ~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGy 616 (982)
T KOG2022|consen 539 WLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGY 616 (982)
T ss_pred HHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHH
Confidence 77765 778889999998865433 33455668899999999999999999988888776533 5678888898888
Q ss_pred HHHHhccc----ch----hchHHhHhhhc----CCCCHHHHHHHHH-HHHHHHHHhhCCccccc-ccCC-CCCCCcchHH
Q 000143 1764 LVEHYATT----SL----PLLLPAVEDGI----FNDNWRIRQSSVE-LLGDLLFKVAGTSGKAL-LEGG-SDDEGASTEA 1828 (2058)
Q Consensus 1764 lv~~~~~~----~l----~~llp~L~~~l----~d~~~~vR~sav~-ll~~Ll~~~~g~~~k~~-~~~~-~e~~~~~~e~ 1828 (2058)
++.....+ .+ ..++..++..+ .+...+.|....- ++..|... ..++.. .+.+ .+.+.....+
T Consensus 617 vls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftS---L~~~~~~~d~d~~~~~~~~~qq 693 (982)
T KOG2022|consen 617 VLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTS---LINKKDIIDTDQPEQREEPFQQ 693 (982)
T ss_pred HHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhc---cCCCCccccccchhhhcccccc
Confidence 87766532 22 22333344332 2222233322211 22222111 111110 0000 0000000000
Q ss_pred HHHHHHHHhCh--hhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhH-HHhHHHHHHHHHHHhcCCCHHHHHHH
Q 000143 1829 HGRAIIEVLGR--DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTL-KEIMPVLMNTLISSLASSSSERRQVA 1905 (2058)
Q Consensus 1829 ~~~~l~~~Lg~--~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l-~~~l~~L~~~l~~~L~~~~~~~R~~A 1905 (2058)
. .++..+.+ ..++.+++ .+....| |-.++..+++.-+.+....+ .+++|.+.+.+.+....+....-...
T Consensus 694 ~--~il~v~~k~i~~~~kv~s-~~~~~s~----vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~ 766 (982)
T KOG2022|consen 694 F--PILQVLQKAIPVFEKVLS-MWLGLSD----VVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLI 766 (982)
T ss_pred C--CHHHHHHHHHHHHHHHHH-HHhcchh----HHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHH
Confidence 0 11111110 11222222 1111222 33333333333333333445 88999999999886555433322222
Q ss_pred HHHHHHHHHHhCcc-----h-------hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh---hhhHhHHhhHHHHH
Q 000143 1906 GRALGELVRKLGER-----V-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---SQLLSFMDELIPTI 1970 (2058)
Q Consensus 1906 ~~~Lg~L~~~lg~~-----~-------l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~---~~l~~~~~~ll~~L 1970 (2058)
..++- ...+.. + +...+-.+.+..-.++++.-......+..++...+. .....|..-+++..
T Consensus 767 ~~~l~---~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a 843 (982)
T KOG2022|consen 767 AACLL---AKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICA 843 (982)
T ss_pred HHHHH---hhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHH
Confidence 22211 112211 1 122222222222234567777766677766665432 11233445556677
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHhCh
Q 000143 1971 RTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2058)
Q Consensus 1971 ~~~L~D~d~~VR~~Aa~a~~~l~~~~g~ 1998 (2058)
..++..+.+..-.+|+.-+..+....+.
T Consensus 844 ~~ll~~pE~~~i~aa~qF~t~~~~~~~s 871 (982)
T KOG2022|consen 844 FILLNSPEPTTIRAASQFLTALATYATS 871 (982)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence 7788888887777777777777655443
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=89.60 E-value=3.7 Score=49.68 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=91.3
Q ss_pred ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh---H------HhHHHHHHHhcc--------CCChHH
Q 000143 1412 RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG---V------KLVLPSLLKGLE--------DKAWRT 1474 (2058)
Q Consensus 1412 ~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~---v------~~llp~Ll~~L~--------~~~~~~ 1474 (2058)
..++.++.-++|.++..+.|.++.+|..++.++..+..+.+... + +.+-+.+...+. +++...
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 45778888999999999999999999999999999998776554 2 333344444443 344444
Q ss_pred HHHHHHHHHHHHhhC---hh-hHhhhhhhHHHH-HHHHh----cCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHH
Q 000143 1475 KQSSVQLLGAMAYCA---PQ-QLSQCLPKIVPK-LTEVL----TDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTL 1542 (2058)
Q Consensus 1475 R~~a~~~Lg~la~~~---p~-~l~~~L~~Iip~-L~~~L----~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~L 1542 (2058)
=..+..++-.++... +. .-...+..++.. ++..+ +-+++.++...++.+..+...++- .+++.++|.+
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445555555554321 11 111122222211 22222 224688999999999988888774 4678999999
Q ss_pred HhccCCCC
Q 000143 1543 LMGLTDPN 1550 (2058)
Q Consensus 1543 l~~l~d~~ 1550 (2058)
.+.+.+|.
T Consensus 271 ~~~l~npf 278 (282)
T PF10521_consen 271 SQILENPF 278 (282)
T ss_pred HHHhcCCC
Confidence 88888874
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=89.46 E-value=30 Score=40.61 Aligned_cols=78 Identities=15% Similarity=-0.006 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhcccchhchHHhHhhhc-CCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHH
Q 000143 1753 VRDAALGAGHVLVEHYATTSLPLLLPAVEDGI-FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGR 1831 (2058)
Q Consensus 1753 VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l-~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~ 1831 (2058)
..-+...+++.++..... .-..+++.+...+ .+.+..++..+++.+..+... +....-.+++
T Consensus 100 ~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~----------------~vvd~~s~w~ 162 (234)
T PF12530_consen 100 CLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA----------------EVVDFYSAWK 162 (234)
T ss_pred HHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH----------------hhccHHHHHH
Confidence 334444566666665554 3344788888888 788889999999999988521 1111334566
Q ss_pred HHHHHhChhhHHHHHH
Q 000143 1832 AIIEVLGRDKRNEVLA 1847 (2058)
Q Consensus 1832 ~l~~~Lg~~~~~~vL~ 1847 (2058)
.+...++.+.+..++.
T Consensus 163 vl~~~l~~~~rp~v~~ 178 (234)
T PF12530_consen 163 VLQKKLSLDYRPLVLK 178 (234)
T ss_pred HHHHhcCCccchHHHH
Confidence 6666666555554443
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.40 E-value=81 Score=41.11 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=75.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhcC-ch--------hHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCCh
Q 000143 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIK-NP--------EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDA 1571 (2058)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~-~~--------~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~ 1571 (2058)
..+.++|+..+-..|-+..++.+.+..... ++ .++.++..+.+.+.|..+++| .|++.+..+--.+....
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 345667888888899988888888887654 23 346788888889999999998 57777665211111222
Q ss_pred hhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000143 1572 PSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2058)
Q Consensus 1572 ~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~ 1604 (2058)
...+.+.....+.+.|++.-||+.|...+..+.
T Consensus 382 ~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 382 GRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred chHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 345667888889999999999999998887764
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=89.24 E-value=2.1 Score=41.96 Aligned_cols=83 Identities=22% Similarity=0.232 Sum_probs=65.2
Q ss_pred hhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhch
Q 000143 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776 (2058)
Q Consensus 1697 llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~l 1776 (2058)
.+...+..++|+.+.+|..++..+..+...-. .-....+.++..++..+.|+++.|-.+|++++..++..+... +
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~----v 78 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE----V 78 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH----H
Confidence 34456677889999999999999988877655 223467889999999999999999999999999998887665 4
Q ss_pred HHhHhhhc
Q 000143 1777 LPAVEDGI 1784 (2058)
Q Consensus 1777 lp~L~~~l 1784 (2058)
+|.|.+..
T Consensus 79 l~~L~~~y 86 (92)
T PF10363_consen 79 LPILLDEY 86 (92)
T ss_pred HHHHHHHH
Confidence 55554433
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=88.91 E-value=1.8 Score=47.19 Aligned_cols=77 Identities=23% Similarity=0.303 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcch-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhc
Q 000143 1897 SSSERRQVAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975 (2058)
Q Consensus 1897 ~~~~~R~~A~~~Lg~L~~~lg~~~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~ 1975 (2058)
+.-+.|..|.+|+..+...+..+. ...++..+..+++| +.++|.-++..+..++... +..+.+.++.+++.+...+.
T Consensus 39 DGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~-p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLA-PEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS--HHHHHHCCTTTHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHhh
Confidence 456899999999999999877664 67889999999999 8899999888888887555 55667778899999988773
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=88.58 E-value=15 Score=46.56 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHH-------HHHHHHHHHHHHH
Q 000143 1335 APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAK-------RREGALLAFECLC 1407 (2058)
Q Consensus 1335 ~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~-------~R~~al~al~~L~ 1407 (2058)
..-|+..+.+.+..+ +...|..|.++|.. .-|. ..++|++...+.+....+ .-...+.....|.
T Consensus 205 lQlYy~~It~a~~g~-~~~~r~eAL~sL~T---DsGL-----~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl 275 (576)
T KOG2549|consen 205 LQLYYKEITEACTGS-DEPLRQEALQSLET---DSGL-----QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL 275 (576)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHhhcc---CccH-----HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh
Confidence 445666677666664 56778888877642 2232 245677666665432222 1222233333344
Q ss_pred HHhcccchhhHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHHHHhhhhhh--H-HhHHHHHHHhccCC--Ch
Q 000143 1408 EKLGRLFEPYVIQMLPLLLVAFS----------DQVVAVREAAECAARAMMSQLSAQG--V-KLVLPSLLKGLEDK--AW 1472 (2058)
Q Consensus 1408 ~~lg~~~~p~l~~llp~Ll~~l~----------D~~~~VR~aA~~al~~l~~~l~~~~--v-~~llp~Ll~~L~~~--~~ 1472 (2058)
+...-.++||+-+++|.++.|+- |+++.+|+-|+..+..++.+++... + .+++..+.+.+.|. .|
T Consensus 276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 44445689999999999998753 5678899999999999999887632 3 56777777777654 68
Q ss_pred HHHHHHHHHHHHHHhh
Q 000143 1473 RTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1473 ~~R~~a~~~Lg~la~~ 1488 (2058)
...++++..|..+...
T Consensus 356 st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 356 STHYGAIAGLSELGHE 371 (576)
T ss_pred hhhhhHHHHHHHhhhh
Confidence 9999999888887753
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=88.52 E-value=1e+02 Score=41.06 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=81.7
Q ss_pred hhHHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc
Q 000143 1575 ALLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~-~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
-.-+|.+...+...+. .+-..+.+++..++. .++.....+ ...++.|.+.+.+ .+...+.+...+..+....+.
T Consensus 97 ~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias---~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~ 172 (543)
T PF05536_consen 97 VSRIPLLLEILSSSSDLETVDDALQCLLAIAS---SPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQ 172 (543)
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc---CcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcch
Confidence 3345666665554443 555666666666653 112212221 2345555555554 556677888888887776663
Q ss_pred cC-------ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhc---------hhHHHHhhHHHHHhhccC-ChhHHHH
Q 000143 1653 EN-------FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG---------TVYFEHILPDIIRNCSHQ-RASVRDG 1715 (2058)
Q Consensus 1653 ~~-------~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g---------~~~l~~llp~Ll~~l~~~-~~~vR~~ 1715 (2058)
+. +..+++.+-..+....+. .+...+.-|+.+....+ ......+...+...+++. .+.-|..
T Consensus 173 ~~~~~~~~~l~~il~~La~~fs~~~~~-~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~ 251 (543)
T PF05536_consen 173 KSWAEDSQLLHSILPSLARDFSSFHGE-DKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDP 251 (543)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence 31 223444443333322222 34445555555554442 113345555555555553 7788888
Q ss_pred HHHHHHHhHHHhchh
Q 000143 1716 YLTLFKYLPRSLGVQ 1730 (2058)
Q Consensus 1716 al~~l~~la~~~g~~ 1730 (2058)
++.+...+...+|.+
T Consensus 252 al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 252 ALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHHHHHhChH
Confidence 888888888887764
|
|
| >cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex | Back alignment and domain information |
|---|
Probab=88.15 E-value=2.4 Score=52.62 Aligned_cols=128 Identities=18% Similarity=0.271 Sum_probs=87.4
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCC-------ChHHHHHHHHHHHHHH
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK-------AWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~-------~~~~R~~a~~~Lg~la 1486 (2058)
..-|+..+...+. +++...|..|...|. ...++..++|.+...+.+. ++..-...+..+.++.
T Consensus 176 lq~yf~~It~a~~----~~~~~~r~~aL~sL~------tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 176 LQLYFEEITEALV----GSNEEKRREALQSLR------TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHHHhc------cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 3445555544443 356777877766554 2345667777777766432 4544444556666666
Q ss_pred hhChhhHhhhhhhHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHhhcCchh--H-HhHHHHHHhccCCCCh
Q 000143 1487 YCAPQQLSQCLPKIVPKLTEVL----------TDTHPKVQSAGQTALQQVGSVIKNPE--I-ASLVPTLLMGLTDPND 1551 (2058)
Q Consensus 1487 ~~~p~~l~~~L~~Iip~L~~~L----------~D~~~~VR~aA~~aL~~l~~~~~~~~--i-~~lvp~Ll~~l~d~~~ 1551 (2058)
....-.+.+|+..++|.++.++ .+.|+.+|..|+..|+.++..+++.+ + ..+...+.+.+.||..
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~ 323 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKK 323 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCC
Confidence 5555568899999999998877 35678999999999999999887543 3 5666677777777754
|
The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as |
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=87.91 E-value=4.7 Score=43.32 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh---------------hhhHhHHhh
Q 000143 1901 RRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---------------SQLLSFMDE 1965 (2058)
Q Consensus 1901 ~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~---------------~~l~~~~~~ 1965 (2058)
+|...+.+++.++.+-.+...+++++.+.+.+++ ++.........|..+.+.... +.+....+.
T Consensus 4 i~~kl~~~l~~i~~~~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~ 82 (148)
T PF08389_consen 4 IRNKLAQVLAEIAKRDWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPD 82 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHH
Confidence 4555667777777776555566666666666554 344443433333322222210 123334466
Q ss_pred HHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhChhhH--HHHHHHHHHhcCCCcchHHHHHHH
Q 000143 1966 LIPTIRTALCDSI----LEVRESAGLAFSTLFKSAGMQAI--DEIVPTLLHALEDDQTSDTALDGL 2025 (2058)
Q Consensus 1966 ll~~L~~~L~D~d----~~VR~~Aa~a~~~l~~~~g~~~~--~~ilp~Ll~~L~~~~~~~~al~aL 2025 (2058)
+++.+.+.+.... .++...+..+++.+........+ ..+++.+++.|.+++.++.|+++|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 6666666664332 78889999999988775554333 258999999999888888888875
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B .... |
| >PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] | Back alignment and domain information |
|---|
Probab=87.84 E-value=8.4 Score=43.70 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=86.7
Q ss_pred HHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHH
Q 000143 1865 LHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVC 1944 (2058)
Q Consensus 1865 ~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~ 1944 (2058)
..++..+....++...+++..++..+.+.-.+++...|..+-.|+|..++.+|.+.+=+++|.-... .+.....|.-..
T Consensus 21 l~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~-~~~~~~~raWLL 99 (198)
T PF08161_consen 21 LNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDN-ADDSQPGRAWLL 99 (198)
T ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccC-CCcCCcccchhH
Confidence 3344444444454445666667777766677788899999999999999999988665666642221 122222333222
Q ss_pred HHHHHHHHhhChhhhHhHHhhHHHHHHHHh---cC----CCHHHHHHHHHHHHHHHHHhCh---------hhHHHHHHHH
Q 000143 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTAL---CD----SILEVRESAGLAFSTLFKSAGM---------QAIDEIVPTL 2008 (2058)
Q Consensus 1945 ~aL~eii~~~~~~~l~~~~~~ll~~L~~~L---~D----~d~~VR~~Aa~a~~~l~~~~g~---------~~~~~ilp~L 2008 (2058)
=-|.+-+. ...+.-|.+.++|.....- .+ .+..-..........+|...+. ..+.++-..|
T Consensus 100 PlLr~~i~---~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~~L 176 (198)
T PF08161_consen 100 PLLRDHIR---NASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAKLL 176 (198)
T ss_pred HHHHHhcc---CCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHHHH
Confidence 22333222 2234445566666555421 11 1111111111223444443321 2334555556
Q ss_pred HHhcCC-CcchHHHHHHHHHHH
Q 000143 2009 LHALED-DQTSDTALDGLKQIL 2029 (2058)
Q Consensus 2009 l~~L~~-~~~~~~al~aL~~i~ 2029 (2058)
.+.|.+ ++-|..++.||+.++
T Consensus 177 ~~~L~~~~~LR~~Ic~aL~~Lv 198 (198)
T PF08161_consen 177 GNALYDQPDLRPIICQALRRLV 198 (198)
T ss_pred HHHHhcCcchHHHHHHHHHHHC
Confidence 666665 556788888887653
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.83 E-value=1.3e+02 Score=41.39 Aligned_cols=90 Identities=18% Similarity=0.099 Sum_probs=66.0
Q ss_pred hHHHHhhhcCCCChhHHHHHHHHHHHHH--HhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh---
Q 000143 1924 IIPILSRGLKDPSASRRQGVCIGLSEVM--ASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM--- 1998 (2058)
Q Consensus 1924 llp~L~~~l~d~~~~vR~~a~~aL~eii--~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~--- 1998 (2058)
++..-...+++++-..|..+...|...+ -..-++.+-|.+.+..|.+...+.+.|+-+-+.|..++-.+..+.|+
T Consensus 804 Il~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~ 883 (1014)
T KOG4524|consen 804 ILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVA 883 (1014)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHH
Confidence 3333445567777777877766554322 12224556777788888899999999999999999999999999885
Q ss_pred -hhHHHHHHHHHHhcC
Q 000143 1999 -QAIDEIVPTLLHALE 2013 (2058)
Q Consensus 1999 -~~~~~ilp~Ll~~L~ 2013 (2058)
+.+.+++|.+...+.
T Consensus 884 sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 884 SRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 567788888876554
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.62 E-value=2.4e+02 Score=44.43 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=97.9
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHh----hhCCC--CchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCS----LVTEP--KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~----~l~~~--~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l 1650 (2058)
.++.+...+...+..++.....++..+-. .++++ ....|..+.+++.+..++.|+.|.-|.....+|+.+.+.+
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Confidence 45555556665556666665555544432 23322 2346777889999999999999999999999999888877
Q ss_pred ccc----CccchHHHHHhhcccCCChHHHh----hHHHHHHHHHHHhc---------hhHHHHhhHHHHHhhccCChhHH
Q 000143 1651 GEE----NFPDLVSWLLDALKSDNSNVERS----GAAQGLSEVLAALG---------TVYFEHILPDIIRNCSHQRASVR 1713 (2058)
Q Consensus 1651 g~~----~~~~llp~L~~~L~~d~~~~~R~----~aa~~L~~i~~~~g---------~~~l~~llp~Ll~~l~~~~~~vR 1713 (2058)
... +..+++..++..++. ...++-. .+-..+-.+.+.+- ......++..+...+.+++..||
T Consensus 1065 ~~~~l~d~~~d~~~~l~fvl~d-~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1065 PSLWLLDFQVDILKALFFVLKD-TESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred hHHHHHHHHHHHhhhHHHhhcC-CccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 643 223455555555542 1111111 12222222222221 11235566777788889999999
Q ss_pred HHHHHHHHHhHHHhchhHHHhH
Q 000143 1714 DGYLTLFKYLPRSLGVQFQNYL 1735 (2058)
Q Consensus 1714 ~~al~~l~~la~~~g~~f~pyl 1735 (2058)
+.+..++..+....|......+
T Consensus 1144 ~~~~~~L~~i~~~s~~~v~~L~ 1165 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSVVKLL 1165 (3550)
T ss_pred HHHHHHHHHHHHHcCCcHHHHH
Confidence 9999999999998876544333
|
|
| >KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.28 E-value=1.1e+02 Score=40.04 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=49.0
Q ss_pred HhCcch-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1915 KLGERV-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1915 ~lg~~~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~ 1993 (2058)
.+|+++ ..-.+-.+...+.=..+.+|..+=.|++ ++.-..|+ -.++.+|.+...|.|.+|--+|..++|-+.
T Consensus 631 AMgeeig~eM~lR~f~h~l~yge~~iRravPLal~-llsvSNPq------~~vlDtLsk~shd~D~eva~naIfamGLiG 703 (878)
T KOG2005|consen 631 AMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALG-LLSVSNPQ------VNVLDTLSKFSHDGDLEVAMNAIFAMGLIG 703 (878)
T ss_pred hhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhccCCCc------chHHHHHHHhccCcchHHHHHHHHHhcccc
Confidence 345553 2233444445555557889998888888 33333232 357888999999999999999999998764
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=87.13 E-value=1e+02 Score=39.45 Aligned_cols=286 Identities=14% Similarity=0.100 Sum_probs=133.9
Q ss_pred HcCCCCHHHHHHHHHHHHHHHHhhhhh----hHHhHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhChhh--HhhhhhhH
Q 000143 1428 AFSDQVVAVREAAECAARAMMSQLSAQ----GVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQ--LSQCLPKI 1500 (2058)
Q Consensus 1428 ~l~D~~~~VR~aA~~al~~l~~~l~~~----~v~~llp~Ll~~L~~~-~~~~R~~a~~~Lg~la~~~p~~--l~~~L~~I 1500 (2058)
.+..++..+...|...+..++..-+.. ....++..+.+.+... +.+....++..+..+....+-. +.. ...
T Consensus 109 lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~--~~~ 186 (429)
T cd00256 109 LLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL--ADG 186 (429)
T ss_pred HHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH--ccC
Confidence 445667888898888888887532221 1123344444455433 3556666778888877654322 111 124
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHhhcC-chhH--HhHHHHHHhccCCCC--hhHHHHHHHHHhcccccc---CC
Q 000143 1501 VPKLTEVLTDT--HPKVQSAGQTALQQVGSVIK-NPEI--ASLVPTLLMGLTDPN--DHTKYSLDILLQTTFVNT---VD 1570 (2058)
Q Consensus 1501 ip~L~~~L~D~--~~~VR~aA~~aL~~l~~~~~-~~~i--~~lvp~Ll~~l~d~~--~~vr~al~~L~~~~f~~~---~~ 1570 (2058)
++.|...++.. .......++-|+=.+.-.-. .+.. ..++|.+.+.+.+.. +.+|-++.++-..--... ..
T Consensus 187 v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~ 266 (429)
T cd00256 187 VPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVK 266 (429)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchh
Confidence 45555555432 23445554444322221100 0111 457777777776653 345755555443100000 00
Q ss_pred hhhH----h-hHHHHHHHhhcC---CCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHH
Q 000143 1571 APSL----A-LLVPIVHRGLRE---RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA 1642 (2058)
Q Consensus 1571 ~~~l----~-~llp~L~~~L~d---~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~a 1642 (2058)
.... . .+.+.+ ..|.. .++++.......-..+-+.+..-..+..|...+..+-+.= .|--+. -..
T Consensus 267 ~~~~~~mv~~~l~~~l-~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~W----Sp~H~s--e~F 339 (429)
T cd00256 267 KTAALQMVQCKVLKTL-QSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHW----SPVHKS--EKF 339 (429)
T ss_pred hhHHHHHHHcChHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccC----CCCCCC--chH
Confidence 0000 0 122222 22222 2233332222222222222222223444544433322210 010000 011
Q ss_pred HHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHh--chhHHHH--hhHHHHHhhccCChhHHHHHHH
Q 000143 1643 IGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL--GTVYFEH--ILPDIIRNCSHQRASVRDGYLT 1718 (2058)
Q Consensus 1643 Lg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~--g~~~l~~--llp~Ll~~l~~~~~~vR~~al~ 1718 (2058)
+..=+..+.++. -+++..|.+.|....++..-..|+.-+|++++.. |...+++ .=..+++.+.++++.||..++.
T Consensus 340 W~EN~~kf~~~~-~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~ 418 (429)
T cd00256 340 WRENADRLNEKN-YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALL 418 (429)
T ss_pred HHHHHHHHHhcc-hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 111222232322 2466777777754334434556777889998886 4433332 2345778888999999999999
Q ss_pred HHHHh
Q 000143 1719 LFKYL 1723 (2058)
Q Consensus 1719 ~l~~l 1723 (2058)
++..+
T Consensus 419 avQkl 423 (429)
T cd00256 419 AVQKL 423 (429)
T ss_pred HHHHH
Confidence 88765
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=86.73 E-value=9.5 Score=38.54 Aligned_cols=93 Identities=18% Similarity=0.282 Sum_probs=67.3
Q ss_pred HHhHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHHhCcc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000143 1880 KEIMPVLMNTLISSLASS----SSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2058)
Q Consensus 1880 ~~~l~~L~~~l~~~L~~~----~~~~R~~A~~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~ 1952 (2058)
++++=.++..+-..+.|. ....|..+.++++.+++.+|.. +.|++.-.|...++ .++.|..++.+...++.
T Consensus 6 ~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~ 83 (107)
T smart00802 6 KDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIK 83 (107)
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHH
Confidence 334434444444444443 4567889999999999977744 36777777777775 45689999999999999
Q ss_pred hhChhhhHhHHhhHHHHHHHHh
Q 000143 1953 SAGKSQLLSFMDELIPTIRTAL 1974 (2058)
Q Consensus 1953 ~~~~~~l~~~~~~ll~~L~~~L 1974 (2058)
.++.+.+.+.+++++..+....
T Consensus 84 ~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 84 TLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred hCCHHHHHHHHHHHHHHHHHhc
Confidence 9998888888787777776543
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=85.39 E-value=52 Score=38.60 Aligned_cols=205 Identities=13% Similarity=0.088 Sum_probs=104.1
Q ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000143 1422 LPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2058)
Q Consensus 1422 lp~Ll~-~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2058)
+|.++. .-+..++.+.....+++..++.+-. .....++..+......+.-..+..+..++..+....+..+ +++..+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-~~L~~~ 79 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-PFLQPL 79 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH-HHHHHH
Confidence 344444 4556678888888888888775543 3334444444444455555555566677777666554333 333333
Q ss_pred HHH-HHH---Hh--cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhcc-CCCChhHH-HHHHHHHhccccccCChh
Q 000143 1501 VPK-LTE---VL--TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTK-YSLDILLQTTFVNTVDAP 1572 (2058)
Q Consensus 1501 ip~-L~~---~L--~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l-~d~~~~vr-~al~~L~~~~f~~~~~~~ 1572 (2058)
+.. ..+ .. .+...++..+...++..++...++ .-.++++.+...+ .+.++.++ -+++.+...--..-++
T Consensus 80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd-- 156 (234)
T PF12530_consen 80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVD-- 156 (234)
T ss_pred HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhcc--
Confidence 222 111 11 233466666767788888887655 5567888888888 45555554 2444433200000001
Q ss_pred hHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCC
Q 000143 1573 SLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI 1632 (2058)
Q Consensus 1573 ~l~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~ 1632 (2058)
.......+.+.+. +..+.+-+..+..+..+...-.+.+....+...++..+-+.....+
T Consensus 157 -~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 157 -FYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred -HHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 1112233333332 3345555544444444433222333334445556666666655544
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=85.04 E-value=1.6e+02 Score=39.73 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=91.8
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-------HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-------QMLPLLLVAFSDQVVAVREAAECAARAMMSQ 1450 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~-------~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~ 1450 (2058)
.++..-...+...++..+-+++.-++..++-+.+. +..|+. ..+|.++.++..+++.|-.++..+++.+...
T Consensus 518 ~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~-~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 518 SVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWT-WSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCc-chhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 34333233444445677777777777777655442 333433 3568899999988899988888899888766
Q ss_pred hhhhhH--HhHHHHHHHhccCC------ChHHHHHHHHHHHHHHhhChhhHhhhhh-hHHHHHHHHhc-CCCHHHHHHHH
Q 000143 1451 LSAQGV--KLVLPSLLKGLEDK------AWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLT-DTHPKVQSAGQ 1520 (2058)
Q Consensus 1451 l~~~~v--~~llp~Ll~~L~~~------~~~~R~~a~~~Lg~la~~~p~~l~~~L~-~Iip~L~~~L~-D~~~~VR~aA~ 1520 (2058)
.....+ +..+|.|...|.+. +|.+-..+|..|-.|....+..-...+. .=++.|+.... -.++++-++|+
T Consensus 597 ~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs 676 (717)
T KOG1048|consen 597 IRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAAS 676 (717)
T ss_pred chhhhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHH
Confidence 555443 67889999988643 4677777777777777543332221110 12333333333 23467777777
Q ss_pred HHHHHHH
Q 000143 1521 TALQQVG 1527 (2058)
Q Consensus 1521 ~aL~~l~ 1527 (2058)
.-|..+-
T Consensus 677 ~vL~~lW 683 (717)
T KOG1048|consen 677 SVLDVLW 683 (717)
T ss_pred HHHHHHH
Confidence 7666654
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=83.96 E-value=1.2e+02 Score=37.56 Aligned_cols=148 Identities=13% Similarity=0.138 Sum_probs=89.6
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hcccc---hhhH----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEK-LGRLF---EPYV----IQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~-lg~~~---~p~l----~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~ 1449 (2058)
+++..|...+..- +.+.|..+...+..+... .+..+ ..|+ .+++..++.+.++++... .+..-++.+++
T Consensus 76 dll~~Li~~L~~L-~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~k 152 (335)
T PF08569_consen 76 DLLYLLIRNLPKL-DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECIK 152 (335)
T ss_dssp THHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHTT
T ss_pred CHHHHHHHHhhhC-CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHHh
Confidence 4555566655544 678888888877777654 33323 2243 467888888888765321 22222222221
Q ss_pred hhh--hhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh----hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHH
Q 000143 1450 QLS--AQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 1522 (2058)
Q Consensus 1450 ~l~--~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p----~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~a 1522 (2058)
.-. ...+ ...+-.+++.++.++..+-..|...+..+...-+ +.+..+....+....+++..++--+|..+.+-
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 100 0000 2233446677778888888888887777665433 33556677888888888999999999998888
Q ss_pred HHHHHh
Q 000143 1523 LQQVGS 1528 (2058)
Q Consensus 1523 L~~l~~ 1528 (2058)
|+.+..
T Consensus 233 L~elll 238 (335)
T PF08569_consen 233 LGELLL 238 (335)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888864
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.56 E-value=50 Score=40.37 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1471 AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1471 ~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
....++.|.+.++.+..+.|.-- ...+..-+.++.|.+..||.+|+..|..||..
T Consensus 37 ~~k~k~lasq~ip~~fk~fp~la----~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 37 TSKEKRLASQFIPRFFKHFPSLA----DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred chHHHHHHHHHHHHHHhhCchhh----hHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 34566677788888777666432 23445556678888899999999999888874
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=82.54 E-value=1.6e+02 Score=42.24 Aligned_cols=55 Identities=13% Similarity=0.180 Sum_probs=30.9
Q ss_pred HHHhhHHHHHHHHHHHhchh----H---HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch
Q 000143 1673 VERSGAAQGLSEVLAALGTV----Y---FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729 (2058)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~g~~----~---l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~ 1729 (2058)
..|..+..+|..+- +|.. + .+.+|..+...+.+....+.+.+...|.+|......
T Consensus 366 aLRrYa~MALTNLT--FGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~ 427 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLT--FGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADS 427 (2195)
T ss_pred HHHHHHHHHhhccc--cccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccc
Confidence 35666666665442 2221 1 245676777766666556666666666666654433
|
|
| >PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] | Back alignment and domain information |
|---|
Probab=82.50 E-value=32 Score=39.05 Aligned_cols=166 Identities=16% Similarity=0.205 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHH-
Q 000143 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY- 1555 (2058)
Q Consensus 1477 ~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~- 1555 (2058)
..+..++.+....+....+.+..++..+.++-.+.+...|+++-.+++.....++.+.+=.++|.-+.. .+.....|.
T Consensus 19 ~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~-~~~~~~~raW 97 (198)
T PF08161_consen 19 EVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDN-ADDSQPGRAW 97 (198)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccC-CCcCCcccch
Confidence 345666666666555556677788888888888877889999999999999999876665666644332 111111121
Q ss_pred HHHHHHhcccccc-CChhhHhhHHHHHHHhh----c----CCCHHHH---HHHHHHHHHHHhhhCCCCchhhhHhhhhHH
Q 000143 1556 SLDILLQTTFVNT-VDAPSLALLVPIVHRGL----R----ERSAETK---KKAAQIVGNMCSLVTEPKDMIPYIGLLLPE 1623 (2058)
Q Consensus 1556 al~~L~~~~f~~~-~~~~~l~~llp~L~~~L----~----d~s~~vr---~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~ 1623 (2058)
-+-.+-+ ++.. .-.-....++|.....- + .++.+.| .-..++++.+-.....|.|+...++.+-+.
T Consensus 98 LLPlLr~--~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F~~~a~~ 175 (198)
T PF08161_consen 98 LLPLLRD--HIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESFPSFAKL 175 (198)
T ss_pred hHHHHHH--hccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHHHHHHHH
Confidence 1111111 0000 00012234555444321 1 1111222 223344444444444556665555666666
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHH
Q 000143 1624 VKKVLVDPIPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1624 L~~~l~d~~~~vR~~a~~aLg~l 1646 (2058)
|.+++.|. +++|....++|-.+
T Consensus 176 L~~~L~~~-~~LR~~Ic~aL~~L 197 (198)
T PF08161_consen 176 LGNALYDQ-PDLRPIICQALRRL 197 (198)
T ss_pred HHHHHhcC-cchHHHHHHHHHHH
Confidence 66666553 56676666666543
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.28 E-value=89 Score=37.28 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=56.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhcCc----hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHH
Q 000143 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578 (2058)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~ll 1578 (2058)
.+.+++.+.+|.||++|...+-.+... +- .+-...++.+.+.+.++.. .+.|..+++...-.......-++.++
T Consensus 7 elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~~ll~~~~ 84 (353)
T KOG2973|consen 7 ELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRKKLLQDLL 84 (353)
T ss_pred HHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 467789999999999999877666543 21 1234567778888877765 33344444331100000001112233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000143 1579 PIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2058)
Q Consensus 1579 p~L~~~L~d~s~~vr~~A~~~l~~L~~ 1605 (2058)
..+...+.|+.+..-...|..+.|+++
T Consensus 85 k~l~~~~~~p~~~lad~~cmlL~NLs~ 111 (353)
T KOG2973|consen 85 KVLMDMLTDPQSPLADLICMLLSNLSR 111 (353)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence 333344455545555667777777765
|
|
| >KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.89 E-value=1.9e+02 Score=38.48 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=62.6
Q ss_pred HHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhh
Q 000143 1880 KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959 (2058)
Q Consensus 1880 ~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l 1959 (2058)
...+..++..+... ...+..|...-.++++++..+|++++|.+=..+...++|.++..-.+...-+..++.... ...
T Consensus 694 ~~~ldvil~~ls~f--~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kEmvdfl~flsQLihkfk-~~~ 770 (980)
T KOG2021|consen 694 SNILDVILVTLSFF--NKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKEMVDFLGFLSQLIHKFK-TDC 770 (980)
T ss_pred HHHHHHHHHHHhhc--cccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH-HHH
Confidence 34444444443322 235678988889999999999999888776666777888887766666666777776554 345
Q ss_pred HhHHhhHHHHHHHH
Q 000143 1960 LSFMDELIPTIRTA 1973 (2058)
Q Consensus 1960 ~~~~~~ll~~L~~~ 1973 (2058)
.+.+.+++|++...
T Consensus 771 ~~ilnqmlppll~r 784 (980)
T KOG2021|consen 771 YQILNQMLPPLLNR 784 (980)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777777766654
|
|
| >COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=80.98 E-value=2e+02 Score=37.98 Aligned_cols=243 Identities=17% Similarity=0.138 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHHhHhcc-----C-C----cchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch----HHHHH
Q 000143 1275 LVREGVVIFTGALAKHLAK-----D-D----PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA----PTLVS 1340 (2058)
Q Consensus 1275 ~vR~~av~~Lg~La~~l~~-----~-~----p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~----~~~v~ 1340 (2058)
.+|.-.+.+|..++..+.+ + + .+++.+++-+...+++.+..++-.++..+.......+... -++++
T Consensus 211 ~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~ 290 (993)
T COG5234 211 ALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIE 290 (993)
T ss_pred HHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHH
Confidence 4555555556665543322 1 1 2456677777777888888898878776666555543322 22222
Q ss_pred HHHHH-----HhcC-----CCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhC-------CCCHHHHHHHHHHH
Q 000143 1341 RLLDQ-----LMKS-----DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD-------RNSAKRREGALLAF 1403 (2058)
Q Consensus 1341 ~Ll~~-----L~~~-----~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~-------~~~~~~R~~al~al 1403 (2058)
-..+. +.+. .++-+..++..-++ ++...|.+... --+.+.+...+.- -+...+|+.+++.+
T Consensus 291 ~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d-~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~v 368 (993)
T COG5234 291 LMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSD-CLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFV 368 (993)
T ss_pred hcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhh-hhhhhheccccceeehheeeeccceeecccceee
Confidence 22222 1110 13445555555444 44333333321 1144444443321 12345788888777
Q ss_pred HHHHHHhcccchhhHHHHHHH-HHH-HcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChH--HHHHH
Q 000143 1404 ECLCEKLGRLFEPYVIQMLPL-LLV-AFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWR--TKQSS 1478 (2058)
Q Consensus 1404 ~~L~~~lg~~~~p~l~~llp~-Ll~-~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~--~R~~a 1478 (2058)
..+.......+.+-+...+-+ ++. .+-|++-.||.+|..++-.......+... ...+. ++ +|. .|...
T Consensus 369 Ws~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIs-lI------N~~sv~r~s~ 441 (993)
T COG5234 369 WSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADGLSLIS-LI------NYVSVTRISN 441 (993)
T ss_pred eeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccchhhhh-hc------cceecchhhh
Confidence 777665444444444444433 333 78899999999998888776654222111 11111 11 332 12221
Q ss_pred H-HHHHHHHhhChhhHhhhhhhHHHH-HHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1479 V-QLLGAMAYCAPQQLSQCLPKIVPK-LTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1479 ~-~~Lg~la~~~p~~l~~~L~~Iip~-L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
| ..+.....+.| ....+. +++.. |.+-|.+-+++|+.....+|.++.+
T Consensus 442 csg~~~r~~~~~~-k~~~Ce-dVF~diLl~Nl~H~~~~~k~~~~y~l~~liK 491 (993)
T COG5234 442 CSGDLCRKVAHFP-KFRSCE-DVFQDILLTNLQHWDVKVKQLSAYSLRQLIK 491 (993)
T ss_pred cchHHHHHhcCcc-ccchHH-HHHHHHHHhhhhccchhhhhhccccHHHHhc
Confidence 1 12222222222 222221 22222 4555566678888888888888854
|
|
| >PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=80.95 E-value=19 Score=38.57 Aligned_cols=123 Identities=16% Similarity=0.105 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc----------------chh
Q 000143 1353 GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL----------------FEP 1416 (2058)
Q Consensus 1353 ~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~----------------~~p 1416 (2058)
.+|...+.+++.++....+..++ ++++.+.+.+.+ ++...+..+..+..+.+.+.+. +..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~Wp--~~l~~l~~~~~~--~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQWP--DFLEDLLQLLQS--SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTST--THHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhCc--hHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 46777888888888877666654 678888877765 4677788888888888766420 111
Q ss_pred hHHHHHHHHHHHcCCC---C-HHHHHHHHHHHHHHHHhhhhhhH--HhHHHHHHHhccCCChHHHHHHHHH
Q 000143 1417 YVIQMLPLLLVAFSDQ---V-VAVREAAECAARAMMSQLSAQGV--KLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2058)
Q Consensus 1417 ~l~~llp~Ll~~l~D~---~-~~VR~aA~~al~~l~~~l~~~~v--~~llp~Ll~~L~~~~~~~R~~a~~~ 1481 (2058)
....++..+...+... . ..+...+.++++..+...+.+.+ ..+++.+++.+.+++- +..|++.
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~l~~~~~--~~~A~~c 147 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQLLQSPEL--REAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHHTTSCCC--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHHcCCHHH--HHHHHHh
Confidence 2233444444444332 2 77888888898888876665554 3578888888865544 5555554
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B .... |
| >PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=80.72 E-value=1.4e+02 Score=38.76 Aligned_cols=233 Identities=15% Similarity=0.040 Sum_probs=114.9
Q ss_pred chhhHHHHHHHHHhhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCcc--c--hhhHHHHHHHHhccc
Q 000143 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD--N--VSLLFPIFENYLNKK 1266 (2058)
Q Consensus 1191 ~~~R~~~~~al~~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~--~--~~~Ll~~l~~~L~~~ 1266 (2058)
+..|..++.+||.+..++..+....++.-++..+|.++...-|..+.-...+........ . ...+.+.+...|..+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~~ 180 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILENP 180 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcCC
Confidence 468999999999999999777777777643347888887777766655555554433221 1 245556666666632
Q ss_pred CC--Chh---HHHHHHHHHHHHHHHHHhH--hccCC-cchHHHHHHHHhhhC--CCC----HHHHHHHHHhhHhhHhhcc
Q 000143 1267 AS--DEE---KYDLVREGVVIFTGALAKH--LAKDD-PKVHAVVDKLLDVLN--TPS----EAVQRAVSSCLSPLMQSMQ 1332 (2058)
Q Consensus 1267 ~~--~~e---~~~~vR~~av~~Lg~La~~--l~~~~-p~i~~iv~~Ll~~L~--~~~----~~V~~av~~~L~~l~~~~~ 1332 (2058)
.. =.| ....+|..+-.++..+..+ ++... |.+..++ +.-. .|+ +.....+..+...+...++
T Consensus 181 ~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v----~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~ 256 (441)
T PF12054_consen 181 EPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVV----QGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLS 256 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhcccccccc----ccccccCCccCCHHHHHHHHHHHHHHHHHhcC
Confidence 10 011 1223444444455554432 11110 1111111 1000 111 1122222222222322221
Q ss_pred cc--------hH---HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHH
Q 000143 1333 DE--------AP---TLVSRLLDQLMK-SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGAL 1400 (2058)
Q Consensus 1333 ~~--------~~---~~v~~Ll~~L~~-~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al 1400 (2058)
.. +. .-+...++.... .....+|..|+.+-+.+.-+.=++.+ .+++.-|.+.++.+.+...+..+.
T Consensus 257 ~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KL--nPiIrpLMdSIK~Een~~LQ~rsA 334 (441)
T PF12054_consen 257 PSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKKL--NPIIRPLMDSIKREENELLQQRSA 334 (441)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc--cHHHHHHHHHhhccccHHHHHHHH
Confidence 11 11 111111111111 12345566666555544433223333 378888888888888888777777
Q ss_pred HHHHHHHHHhcccchhhHHHHHHHHHHHc
Q 000143 1401 LAFECLCEKLGRLFEPYVIQMLPLLLVAF 1429 (2058)
Q Consensus 1401 ~al~~L~~~lg~~~~p~l~~llp~Ll~~l 1429 (2058)
.++..+.+.+...-..-.+.|+..|...+
T Consensus 335 ~slA~Li~~~~~rkp~PndKIvkNLc~fl 363 (441)
T PF12054_consen 335 ESLARLIQLCVDRKPCPNDKIVKNLCTFL 363 (441)
T ss_pred HHHHHHHHHHhCCCCCCcHHHHHHHhhhh
Confidence 77777776654211222345666666554
|
This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important. |
| >KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.11 E-value=1.9e+02 Score=37.37 Aligned_cols=182 Identities=14% Similarity=0.205 Sum_probs=114.0
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC-----h---hhHHHhHHHHHHHHHHHhcCCC------------HHH
Q 000143 1842 RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT-----P---KTLKEIMPVLMNTLISSLASSS------------SER 1901 (2058)
Q Consensus 1842 ~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~-----~---~~l~~~l~~L~~~l~~~L~~~~------------~~~ 1901 (2058)
+-..+..+..+.......|-.+....|-.+.... . .-+++|...++..+....+-+. .+.
T Consensus 289 ~l~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~f 368 (559)
T KOG2081|consen 289 FLRIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEF 368 (559)
T ss_pred chhHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHH
Confidence 3345555666655555677777777776665321 1 2467888888888887655332 356
Q ss_pred HHHHHHHHHHHHHHhCcc-hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcC--CC
Q 000143 1902 RQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD--SI 1978 (2058)
Q Consensus 1902 R~~A~~~Lg~L~~~lg~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D--~d 1978 (2058)
|....+.+.+++--.|.+ .+.++.-.+.. +..+.+.-+++...+..++...+++. .+++|.+.+.+.+ .-
T Consensus 369 R~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e-----~~i~pevl~~i~nlp~Q 441 (559)
T KOG2081|consen 369 RLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE-----NTIMPEVLKLICNLPEQ 441 (559)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc-----cchHHHHHHHHhCCccc
Confidence 788888888888888865 45555444443 34455677788888888887776543 6788888887653 23
Q ss_pred HHHHHHHHHHHHHHHHHhCh-h-hHHHHHHHHHHhcCCCcchHHHHHHHHHHHh
Q 000143 1979 LEVRESAGLAFSTLFKSAGM-Q-AIDEIVPTLLHALEDDQTSDTALDGLKQILS 2030 (2058)
Q Consensus 1979 ~~VR~~Aa~a~~~l~~~~g~-~-~~~~ilp~Ll~~L~~~~~~~~al~aL~~i~~ 2030 (2058)
..+|..+..-+|.+.+.+.. + -++-++..+...+....-...+-.++..++.
T Consensus 442 ~~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~~as~~a~~~~~i~~ 495 (559)
T KOG2081|consen 442 APLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKRLASAAALAFHRICS 495 (559)
T ss_pred hhHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 34999999999999877653 2 3344455555555543322333333444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2058 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-27 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 8e-24 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 9e-24 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 422 bits (1085), Expect = e-126
Identities = 100/472 (21%), Positives = 190/472 (40%), Gaps = 18/472 (3%)
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREG 1386
S ++ ++ L +L R A +A + G I L +G
Sbjct: 4 HHHSDSQQSIKVLEELFQKL-SVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKG 62
Query: 1387 LADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446
+ D+ +A A+ A L EPY++Q++P + ++ ++ A +
Sbjct: 63 IKDKKTAANAMQAV-AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLIS 121
Query: 1447 MMSQLSAQGVKLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLT 1505
+++ ++ +K +LP L + + W+ K + + AM A Q++ +P+++P L+
Sbjct: 122 IVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLS 181
Query: 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565
E + DT +V++A A+ + + N +I +P+L+ + DP ++ +L TTF
Sbjct: 182 ETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP-TEVPETVHLLGATTF 240
Query: 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVK 1625
V V +L+++VP++ RGL ER K+K+A I+ NMC LV +P+ + P++G LLP +K
Sbjct: 241 VAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLK 300
Query: 1626 KVLVDP-IPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSE 1684
PE R V RA+ +L R +G D + L A + S Q ++E
Sbjct: 301 SNFATIADPEAREVTLRALKTLRR-VGNVGEDDAIPELSHA-------GDVSTTLQVVNE 352
Query: 1685 VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFK-----YLPRSLGVQFQNYLQQVL 1739
+L I+ + I R + Y+ L + +
Sbjct: 353 LLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEF 412
Query: 1740 PAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRI 1791
+ D + ++ +L R
Sbjct: 413 RKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRY 464
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 6e-27
Identities = 65/404 (16%), Positives = 139/404 (34%), Gaps = 46/404 (11%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQR 1709
+ ++ L L ++ R A ++ L + EH ++ + ++
Sbjct: 9 SQQSIKVLEELFQKLSVATAD-NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKK 67
Query: 1710 ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA 1769
+ +L + Y+ Q++PAI ++++ ++ A +V
Sbjct: 68 TAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN 127
Query: 1770 TTSLPLLLPAVEDGIFNDN-WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828
++ LLP + + I N W+ + + + ++ + E
Sbjct: 128 PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE------------ 175
Query: 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWK---TIVANTPKTLKEIMPV 1885
+I VL +E + D V+ AA V N K+I
Sbjct: 176 ----LIPVL-----SETM-------WDTKKEVKAAATAAMTKATETVDN-----KDIER- 213
Query: 1886 LMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCI 1945
+ +LI +A + V V ++ L ++P+LSRGL + ++ +
Sbjct: 214 FIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAV 273
Query: 1946 GLSEVMAS--AGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFSTLFKSAGMQAID 2002
+ + M + F+ +L+P +++ + E RE A TL + G D
Sbjct: 274 -IIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR-VGNVGED 331
Query: 2003 EIVPTLLHALEDDQTSDTALDGLKQILSVRTTAVLPHILPKLVH 2046
+ +P L HA + T + LK ++ + +
Sbjct: 332 DAIPELSHAGDVSTTLQVVNELLKDETVAPRFKIVVEYIAAIGA 375
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 6e-10
Identities = 26/182 (14%), Positives = 64/182 (35%), Gaps = 11/182 (6%)
Query: 1874 NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS--IIPILSRG 1931
+ + + ++ L L+ ++++ R + + L++G
Sbjct: 3 HHHHSDSQQSIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKG 62
Query: 1932 LKDP-SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFS 1990
+KD +A+ S + ++ +L+P I T + E++ A
Sbjct: 63 IKDKKTAANAMQAV--AHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLI 120
Query: 1991 TLFKSAGMQAIDEIVPTLLHALEDD---QTSDTALDGLKQILSVRTTAV---LPHILPKL 2044
++ + AI ++P L +A+ + Q L ++ V +P ++P L
Sbjct: 121 SIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVL 180
Query: 2045 VH 2046
Sbjct: 181 SE 182
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 8e-05
Identities = 51/329 (15%), Positives = 118/329 (35%), Gaps = 44/329 (13%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLY--IRDIGLGGDNVDAGWL 1192
LF+ LS + + R A +A+ + G++ ++ G +
Sbjct: 19 LFQKLSVATADNRHEIASEVASF-------LNGNIIEHDVPEHFFGELAKGIKDKKTA-A 70
Query: 1193 GRQGIALALHSAADVLRTKDLPVIMTFL--ISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
A+A + L P I+ + I + + +++ I I++
Sbjct: 71 NAMQ-AVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA--KHLAKDDPKVHA-----VVD 1303
+ L P N + + +EK LA + A ++
Sbjct: 130 AIKALLPHLTNAIVETNKWQEK-----------IAILAAFSAMVDAAKDQVALRMPELIP 178
Query: 1304 KLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-DEAPTLVSRLLDQLMKSDKYGERRGAAFGL 1362
L + + + V+ A ++ ++ +++ + + L+ + + E L
Sbjct: 179 VLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPE---TVHLL 235
Query: 1363 AGV--VKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLFEPYV 1418
V ++L + L GL +R + +R+ A++ + +C+ + ++ P++
Sbjct: 236 GATTFVAEVTPATLSI--MVPLLSRGLNERETGIKRKSAVI-IDNMCKLVEDPQVIAPFL 292
Query: 1419 IQMLPLLLVAFSDQVVAVREAAECAARAM 1447
++LP L F+ +A EA E RA+
Sbjct: 293 GKLLPGLKSNFAT--IADPEAREVTLRAL 319
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 284 bits (728), Expect = 6e-83
Identities = 120/672 (17%), Positives = 228/672 (33%), Gaps = 96/672 (14%)
Query: 1329 QSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388
+ D++ ++ L+D+L +++ R + L+ + G+ + + L + +
Sbjct: 2 AADGDDSLYPIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERTRSE-LLPFLTDTIY 59
Query: 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMM 1448
D + +G YV +LP L + + VR+ A + RA+
Sbjct: 60 DEDEV--LLALAEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAIS 115
Query: 1449 SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508
+ S ++ L+K L W T ++S G + C P+ S ++ +
Sbjct: 116 HEHSPSDLEAHFVPLVKRLAGGDWFTSRTSA--CGLFSVCYPRVSSAVKAELRQYFRNLC 173
Query: 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568
+D P V+ A + L + V++ + S
Sbjct: 174 SDDTPMVRRAAASKLGEFAKVLELDNVKS------------------------------- 202
Query: 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628
++P+ + + A + N+ L+ + L++P +++
Sbjct: 203 -------EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEALVMPTLRQAA 251
Query: 1629 VDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA 1688
D VR + A L + +G E + L D R+ A+ + E
Sbjct: 252 EDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311
Query: 1689 LG-----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIL 1743
L V ILP I S V+ ++ L LG N ++ +LP L
Sbjct: 312 LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFL 369
Query: 1744 DGLADENESVRDAALGAGHVLVEHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
L DE VR + + E L LLPA+ + + WR+R + +E + L
Sbjct: 370 AQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLL 429
Query: 1803 LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR-SDVSLSVR 1861
LG + +E L +L M D ++R
Sbjct: 430 -------------------------------AGQLGVEFFDEKLNSLCMAWLVDHVYAIR 458
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-ERV 1920
+AA K +V K + ++ +++ + R + L G +
Sbjct: 459 EAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDIT 516
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980
++P + R DP A+ R V L ++ S L E+ P + D ++
Sbjct: 517 TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ---SEVKPILEKLTQDQDVD 573
Query: 1981 VRESAGLAFSTL 1992
V+ A A + L
Sbjct: 574 VKYFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 4e-29
Identities = 74/406 (18%), Positives = 150/406 (36%), Gaps = 20/406 (4%)
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716
++ L+D L++++ + R + + LS + ALG L + + + V
Sbjct: 10 YPIAVLIDELRNEDVQL-RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68
Query: 1717 LTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL 1776
+G Y+ +LP + E VRD A+ + + ++ + L
Sbjct: 69 AEQLGTFTTLVG--GPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH 126
Query: 1777 LPAVEDGIFNDNWR-IRQSSVELLGDLLFKVAGTSGKALL----EGGSDDEG---ASTEA 1828
+ + +W R S+ L +V+ L SDD + +
Sbjct: 127 FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAAS 186
Query: 1829 HGRAIIEVLGRDK-RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLM 1887
+VL D ++E++ + SD SVR A+ I P+ +++ ++M
Sbjct: 187 KLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--EDLEALVM 244
Query: 1888 NTLISSLASSSSERRQVAGRALGELVRKLGERVLPS-IIPILSRGLKDPSASRRQGVCIG 1946
TL + S R + EL + +G + + ++P +KD A R
Sbjct: 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHK 304
Query: 1947 LSEVMASAGKSQLLS-FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQ-AIDEI 2004
+ E + + M +++P I+ + D+ V+ + L G I+ +
Sbjct: 305 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHL 364
Query: 2005 VPTLLHALEDD--QTSDTALDGLKQILSVR-TTAVLPHILPKLVHL 2047
+P L L+D+ + + L + V + +LP +V L
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVEL 410
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 2e-07
Identities = 78/548 (14%), Positives = 159/548 (29%), Gaps = 67/548 (12%)
Query: 859 VQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSR---- 914
V L+ L + + P + H LP L ++ +V D A E+L +S
Sbjct: 64 VLLALAEQLGTFTTL-VGGPEYVHCLLPPLESLAT--VEETVVRDKAVESLRAISHEHSP 120
Query: 915 ----------CTAMPLCNWALDIATALRLIVTEEVHVDS----DLIPSVGEAAKNKESLC 960
+ +W +A L V S +L + +
Sbjct: 121 SDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMV 180
Query: 961 LFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRT--GLHDDVLQMLYKHMDPLL 1018
+ V S + P+ + + + L + + + +
Sbjct: 181 RRAAASKLGEFAKVLELDNVKSE--IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED 238
Query: 1019 PLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTK-----DVHV 1073
+ M ++ + + EL + P + L + + V
Sbjct: 239 LEALV-MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1074 RMACLNAVKCIPAVSTRSLPENI---EVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGT 1130
R A + VK + EN+ ++ + V D + V A + G
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1131 DYS------GLFKALSHSNYNVRLAAAEALAT-----ALDEYPDSIQGSLSTLFSLYIRD 1179
D + L VRL L + + S+ ++ L
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE----- 412
Query: 1180 IGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA 1239
DA W R I + A L + + L L D +R +
Sbjct: 413 --------DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSN 464
Query: 1240 GIMIIDKHGRDNV-SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV 1298
+++K G++ + + P + L R + L++ +D
Sbjct: 465 LKKLVEKFGKEWAHATIIPKVLAMSG------DPNYLHRMTTLFCINVLSEVCGQDITTK 518
Query: 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-PTLVSRLLDQLMKSDKYGERRG 1357
H ++ +L + P V+ V+ L + + + + V +L++L + +
Sbjct: 519 H-MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYF 577
Query: 1358 AAFGLAGV 1365
A L +
Sbjct: 578 AQEALTVL 585
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 281 bits (720), Expect = 2e-77
Identities = 119/763 (15%), Positives = 270/763 (35%), Gaps = 64/763 (8%)
Query: 1290 HLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKS 1349
+ DD VV +L +L + VQ CL PL+ +++ + L M S
Sbjct: 38 SIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS 97
Query: 1350 DKYGERRGAAFGLAGVVK-------GFGISSLKKYGIAATLREGLADRNSAKRREGALLA 1402
DK R ++ GL V+ G +++ I L +A + + AL
Sbjct: 98 DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDI 157
Query: 1403 FECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPS 1462
+ + G L + +L LL + +AVR+ A ++ ++
Sbjct: 158 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEH 217
Query: 1463 LLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQT 1521
LL L ++ + T ++ +Q + A++ A ++ + L KI+P + + +++
Sbjct: 218 LLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277
Query: 1522 ALQQVGSVIKN---PEIASLVPTLLMGLT-DPNDHTKYSLDILLQTTFVNTVDAPSLALL 1577
A + P +++++ L LT DPN + + D +
Sbjct: 278 AFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDD 337
Query: 1578 VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637
+ S + ++ AA+ + + S T + + + + P + + V++
Sbjct: 338 EYSDD---DDMSWKVRRAAAKCLDAVVS--TRHEMLPEFYKTVSPALISRFKEREENVKA 392
Query: 1638 VAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHI 1697
A SL++ ++ ++ + ++ +I
Sbjct: 393 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS-----------------QVPNI 435
Query: 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES--VRD 1755
+ + + + R + L L ++ ++P I+ L D++ S ++
Sbjct: 436 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKI 495
Query: 1756 AALGAGHVLVEHYATTSL----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811
AL +V++ +++ L+P V + + ++I ++ + L+ +
Sbjct: 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI----- 550
Query: 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
+ L + S D + I+ L D+ V++ A+ I
Sbjct: 551 RPLDQPSSFDATPYIKDLFTCTIKRLKAA--------------DIDQEVKERAISCMGQI 596
Query: 1872 VANTPKTLKEIMPVLMNTLISSLASSSSERRQVA--GRALGELVRKLGERVLPSIIPILS 1929
+ N L +P + + L + + V G ++ VL +PIL+
Sbjct: 597 ICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILA 656
Query: 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAF 1989
L+ + + G L ++ + S + +D ++ + + +S + V + A
Sbjct: 657 SFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFL 716
Query: 1990 STLFK---SAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQIL 2029
+TL K S+ + I+ L+ + AL +
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFF 759
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 161 bits (408), Expect = 7e-40
Identities = 95/597 (15%), Positives = 198/597 (33%), Gaps = 41/597 (6%)
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVP 1540
L+ + + + K+V + ++L D + +VQ+ L + S +K ++ ++V
Sbjct: 30 LMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVD 89
Query: 1541 TLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--SAETKKKAAQ 1598
TL + + + I L+T A S + L V + + R SA K++
Sbjct: 90 TLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149
Query: 1599 IVGNMCSLVTE-----PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653
+ ++ + ++ + +L + L P VR A+G L+ G
Sbjct: 150 VQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI 209
Query: 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRA 1710
F DL+ LL L ++S Q ++ + G Y E I+P +++ C+
Sbjct: 210 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDD 269
Query: 1711 SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA-DENESVRDAALGAGHVLVEHYA 1769
+R+ + F+ R + ++ ++ L L D N + D + +
Sbjct: 270 ELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD 329
Query: 1770 TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAH 1829
+ +W++R+++ + L + T + L E A
Sbjct: 330 --DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAV----VSTRHEMLPEFYKTVSPALISRF 383
Query: 1830 GRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNT 1889
V + +V A + L+ +P ++
Sbjct: 384 KEREENV-----KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKA 438
Query: 1890 LISSLASSSSERRQVAGRALGELVRKLG---ERVLPSIIPILSRGLKDPSASR--RQGVC 1944
L + S + RQ L ELV L + +P ++P + L D S+S +
Sbjct: 439 LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDAL 498
Query: 1945 IGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK------SAGM 1998
L ++ + + L+P + + D ++ A L L K
Sbjct: 499 SCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSS 558
Query: 1999 QAIDEIVPTLLHALED--------DQTSDTALDGLKQILSVRTTAVLPHILPKLVHL 2047
+ L + + A+ + QI+ + + L
Sbjct: 559 FDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 2e-34
Identities = 150/1006 (14%), Positives = 308/1006 (30%), Gaps = 141/1006 (14%)
Query: 1063 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA--VHDPEKSVAEAAED- 1119
+ D +R C+ A + + + ++ ++ + +DP + + ED
Sbjct: 261 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 320
Query: 1120 --IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYI 1177
+ G D + ++ VR AAA+ L + + + T+ I
Sbjct: 321 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 380
Query: 1178 RDIGLGGDNV----------------DAGWLGRQGIALALHSAADVLRTKDLPVIMTFLI 1221
+NV A+ + +P I+ L
Sbjct: 381 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 440
Query: 1222 SRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDLVRE 1278
+ + + + R N +++ ++ +L P LN K+S ++
Sbjct: 441 -KQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSN----LKI 495
Query: 1279 GVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNTPSEAVQ-----------RAVSSCLS 1325
+ + + + P V A+V ++ + P + + +
Sbjct: 496 DALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ 555
Query: 1326 PLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLRE 1385
P L + + +L +D E + A G + +L
Sbjct: 556 PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615
Query: 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAAR 1445
+N R L P + + +P+L A++ A
Sbjct: 616 LERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 1446 AMM----SQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501
++ L+A + VL L + + Q ++ L +A P LS+ I+
Sbjct: 676 ILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSIL 735
Query: 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILL 1561
+L L + A L +++ LL LT P
Sbjct: 736 NELIG-LVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGP------------ 782
Query: 1562 QTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLL 1621
V + S AL ++S + K + C PK+ +G +
Sbjct: 783 -------VYSQSTALT--------HKQSYYSIAKCVAALTRAC-----PKEGPAVVGQFI 822
Query: 1622 PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQG 1681
+VK +R +A ++G + + +L S +L+A S + V +S A+
Sbjct: 823 QDVKNS--RSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEV-KSAASYA 879
Query: 1682 LSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741
L + Y +L +I Q + +L + + + V + Y++ +
Sbjct: 880 LGSISVGNLPEYLPFVLQEITSQPKRQYLLLH----SLKEIISSASVVGLKPYVENIWAL 935
Query: 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGD 1801
+L E R+ L T LP L + + R S V +
Sbjct: 936 LLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLIS----GSSYARSSVVTAVKF 991
Query: 1802 LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR 1861
+ H + I +L + D L+VR
Sbjct: 992 TISD-----------------------HPQPIDPLL-----KNCIGDFLKTLEDPDLNVR 1023
Query: 1862 QAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS------------------ERRQ 1903
+ AL + + N P +++++ ++ L + + R+
Sbjct: 1024 RVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRK 1083
Query: 1904 VAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQG--VCIGLSEVMASAGKSQLL 1960
A + L+ +R+ + + + GLKD + + + LS + SA +L
Sbjct: 1084 AAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQRLD 1143
Query: 1961 SFMDELIPTIRTALCDSIL--EVRESAGLAFSTLFKSAGMQAIDEI 2004
++ L T T + + + E + L S + A + I E
Sbjct: 1144 RLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEA 1189
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 83.2 bits (204), Expect = 7e-16
Identities = 56/310 (18%), Positives = 112/310 (36%), Gaps = 26/310 (8%)
Query: 1718 TLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLL 1777
L L + + ++V+ IL L D+N V++ A+ LV + ++
Sbjct: 29 DLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIV 88
Query: 1778 PAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVL 1837
+ + +D ++R S L ++ ++ S + L + I L
Sbjct: 89 DTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL----------AANVCKKITGRL 138
Query: 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASS 1897
+ +SV+ AL + +++ L P ++ L+ L S
Sbjct: 139 -----------TSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP 187
Query: 1898 SSERRQVAGRALGELVRKLGERVLPSIIPILSRGL-KDPSASRRQGVCIGLSEVMASAGK 1956
R+ ALG LV G V +I L L K+ S S + ++ + AG
Sbjct: 188 RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH 247
Query: 1957 SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA---IDEIVPTLLHALE 2013
++ +++++IP + E+RE AF + + + + I+ L L
Sbjct: 248 -RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLT 306
Query: 2014 DDQTSDTALD 2023
D + +
Sbjct: 307 YDPNYNYDDE 316
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 53.6 bits (127), Expect = 7e-07
Identities = 125/1048 (11%), Positives = 301/1048 (28%), Gaps = 86/1048 (8%)
Query: 267 ILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKSSNPDALE 326
++ +G L+ V + + L + ++ R ++ + + E
Sbjct: 68 AVKCLGPLVSKVKEYQVETIVDTLCTNMLS--DKEQLRDISSIGLKTVIGELPPASSGSA 125
Query: 327 AMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATE--GKYLNSLSLTICKFLLSCYK 384
K + G +A + AL +++ G L + +I LL
Sbjct: 126 LAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT 185
Query: 385 DEGNEEVKLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE--ALRRGHLRCLRVICTN 442
V+ + A+ +I+ DL+ S L + + + R +++C+ I
Sbjct: 186 SP-RLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR- 243
Query: 443 TDAVLQVSSLLGPLIQLVKTGFTKAVQRLDGIYAFLIVGKIAAADIKAEETVTKEKLWSL 502
Q +G ++ + K D + + ++ ++++
Sbjct: 244 -----QAGHRIGEYLEKIIPLVVKFCNVDDDE-----LREYCIQAFESFVRRCPKEVYPH 293
Query: 503 VSQNEPSLVPTAMISKLSVDDCMACVELLVVLLVEHSHRVLETFSVKLLLQLVLLFTCHP 562
VS + + L+ D + +
Sbjct: 294 VST-----IINICLKYLTYDPNYNYDDEDEDENAMDA---DGGDDDDQGSDDEYSDDDDM 345
Query: 563 SWDIRKMAHDATRKIITSVPHLSEALLLEFSNFLSLVGEKIIISKTSDTDDFVDSQVPFL 622
SW +R+ A ++++ + F V +I ++
Sbjct: 346 SWKVRRAAAKCLDAVVSTRHEM-------LPEFYKTVSPALISRFKEREENVKADVFHAY 398
Query: 623 PSVEVQVKTLLVIASVALARGPSASARVIFCSHHPSIVGTGKR---DAVWQRLHKCLRAV 679
S+ Q + + A + + S P+IV + + + C +
Sbjct: 399 LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNML 458
Query: 680 GFNVIEI---VSADVGNLCKVLLGSLGLMSANLLEQQAAINSLSTLMSITPKDTYVAFEK 736
V + ++ + L ++ SL S++ + A++ L ++ + +
Sbjct: 459 TELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQ 518
Query: 737 HLKDLPDCYVHDSLSENDIQVFYTPEGML----------SSEQGVYIAEIVAAKNTKQSK 786
L V D + + + ++ S + YI ++ +
Sbjct: 519 ALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA 578
Query: 787 GRFRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKDIGKSTKKADKGKTAKEEARELLL 846
++ + +G ++ ++ + + + + + T K
Sbjct: 579 ADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGS 638
Query: 847 NEEASIREKVQGVQRNLSLMLSALGEMAIANPVFAHSQLPSLVKFVDPLLQSPIVGDVAY 906
+ +R + L+ L S L L+K L + ++ V
Sbjct: 639 PLKIDLRPVLGEGVPILASFLRKNQRALKLG---TLSALDILIKNYSDSLTAAMIDAVLD 695
Query: 907 EALVKLSRCTAMPLCNWALDIATALRLIVTEEVH-VDSDLIPSVGEAAKNKESLCLFERI 965
E L L + M + A+ T L + + + ++ + ++
Sbjct: 696 E-LPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSA 754
Query: 966 VNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRM 1025
+ + + + ++ + S H + K + L
Sbjct: 755 MLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG 814
Query: 1026 ISVLYHVLGVVPSYQA----------AIGSALNELCLGLQPNEVASALHGVYTKDVHVRM 1075
+V+ + V + ++ ++G + + L Q + L + V+
Sbjct: 815 PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKS 874
Query: 1076 ACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYS-- 1133
A A + ++S +LPE + + + + + ++I Y
Sbjct: 875 A---ASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN 931
Query: 1134 ---GLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAG 1190
L K + R AE L P+++ L L + A
Sbjct: 932 IWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRLKGY---------LISGSSYAR 982
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
+ + + I FL + L D + +VR L
Sbjct: 983 SSVVTAVKFTISDHPQPIDPLLKNCIGDFL--KTLEDPDLNVRRVALVTFNSAAHNKPSL 1040
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVRE 1278
LL + + N+ +E L+RE
Sbjct: 1041 IRDLLDTVLPHLYNETKVRKE---LIRE 1065
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 2e-40
Identities = 37/214 (17%), Positives = 84/214 (39%), Gaps = 2/214 (0%)
Query: 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPK 1514
+ + LE+K W ++ S+++L + P+ + +V L +V+T D++
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1515 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574
+ + L + + ++ + L + K ++ L+ + SL
Sbjct: 73 LVAMAGKCLALLAKGLAK-RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE 1634
+ L ++ K + A + + + LL + K L +P P
Sbjct: 132 EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPT 191
Query: 1635 VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
VR +A A+G+LI+ MG++ L++ + +
Sbjct: 192 VRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMA 225
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 35/215 (16%), Positives = 83/215 (38%), Gaps = 9/215 (4%)
Query: 1334 EAPTLVSRL---LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG-IAATLREGLAD 1389
+ ++S++ ++ K+ R+ + L ++ +YG + + L++ +
Sbjct: 8 DPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITK 67
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
++ A L + L + F Y +P LL F ++ V A A A+ +
Sbjct: 68 DSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYA 127
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLS-QCLPKIVPKLTEV 1507
S + S+++ L +K K + + P L+ + L + L +
Sbjct: 128 STSLE---AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184
Query: 1508 LTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542
L + P V+ + AL + ++ + + L+ +
Sbjct: 185 LNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 6e-16
Identities = 30/237 (12%), Positives = 70/237 (29%), Gaps = 31/237 (13%)
Query: 1773 LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRA 1832
L + D + W +R+ S+E+L LL
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGA---------------- 56
Query: 1833 IIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892
++ L ++ D ++ + A + K + +L+
Sbjct: 57 LVSAL-----------KKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLE 105
Query: 1893 SLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952
A+ + L + + L + + S + + ++ +
Sbjct: 106 KFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALT 162
Query: 1953 SAGKSQLL-SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTL 2008
+ L + L ++ L + VR+S+ A TL K G +A+ ++ +
Sbjct: 163 RTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 4e-11
Identities = 24/160 (15%), Positives = 58/160 (36%), Gaps = 8/160 (5%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA---LGTVYFEHILPDIIRNCSH- 1707
+ + D L+ R + + L ++L L + ++ + + +
Sbjct: 10 VDILSKMPKDFYDKLEEKKWT-LRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68
Query: 1708 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767
+ L + L +F NY +P++L+ ++ +V A A +
Sbjct: 69 SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREA---IDAI 125
Query: 1768 YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVA 1807
YA+TSL ++ + + N N ++ + + L +
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQ 165
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 39/216 (18%), Positives = 87/216 (40%), Gaps = 14/216 (6%)
Query: 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-DPI 1632
L+ + + L E+ +K++ +++ + + PK G L+ +KKV+ D
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH--PKLENGEYGALVSALKKVITKDSN 70
Query: 1633 PEVRSVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
+ ++A + + L +G+ + V LL+ K NV L E + A+
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNV-----VTALREAIDAI 125
Query: 1690 -GTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ--FQNYLQQVLPAILDGL 1746
+ E I+ + S++ SV+ + L+ + +++ L
Sbjct: 126 YASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTL 185
Query: 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782
+ + +VRD++ A L++ ++ LL V+
Sbjct: 186 NEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDP 221
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 5e-08
Identities = 35/207 (16%), Positives = 76/207 (36%), Gaps = 13/207 (6%)
Query: 1735 LQQVLPAILDGLADENESVRDAALGAGHVLVE---HYATTSLPLLLPAVEDGIFND-NWR 1790
L ++ D L ++ ++R +L L+ L+ A++ I D N
Sbjct: 13 LSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVV 72
Query: 1791 IRQSSVELLGDL-------LFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843
+ + + L L A +LLE + + A AI +
Sbjct: 73 LVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE 132
Query: 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT--LKEIMPVLMNTLISSLASSSSER 1901
++ S+ + SV+ + T T K+++ +L +L+ +L
Sbjct: 133 AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTV 192
Query: 1902 RQVAGRALGELVRKLGERVLPSIIPIL 1928
R + ALG L++ +G++ + ++ +
Sbjct: 193 RDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 30/213 (14%), Positives = 79/213 (37%), Gaps = 18/213 (8%)
Query: 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSER 1901
+++ Y + ++R+ +L V + ++ + PK L++ L + S+
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVL 73
Query: 1902 RQVAGRALGELVRKLGERVLP---SIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQ 1958
+AG+ L L + L +R + +P L K+ + + + + AS
Sbjct: 74 VAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--- 130
Query: 1959 LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-----IDEIVPTLLHALE 2013
++ +I +L + V+ L + A + + +L+ L
Sbjct: 131 ----LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN 186
Query: 2014 DDQTS--DTALDGLKQILSVRTTAVLPHILPKL 2044
+ + D++ + L ++ + + +L +
Sbjct: 187 EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 19/177 (10%), Positives = 56/177 (31%), Gaps = 13/177 (7%)
Query: 1881 EIMPVLMNTLISSLASSSSERRQVAGRALGELVR---KLGERVLPSIIPILSRGLKDPSA 1937
+I+ + L R+ + L +L+ KL +++ L + + S
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997
+ ++A + ++ +P++ + V + A ++ S
Sbjct: 71 VVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130
Query: 1998 MQAIDEIVPTLLHALEDD--QTSDTALDGLKQILS-----VRTTAVLPHILPKLVHL 2047
++ +++ +L + + + L+ +L + LV
Sbjct: 131 ---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-28
Identities = 84/545 (15%), Positives = 178/545 (32%), Gaps = 71/545 (13%)
Query: 1498 PKIVPKLTEVLTDTH---PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554
+ + ++ ++L ++ +Q Q L+Q+ + P+ + + +L L ++ T+
Sbjct: 9 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTR 65
Query: 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614
++L K + + + D I
Sbjct: 66 SLSGLIL--------------------------------KNN--VKAHFQNFPNGVTDFI 91
Query: 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE 1674
E + D P +R+ I ++ +N+PDL+ L L S++ N
Sbjct: 92 ------KSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNT- 144
Query: 1675 RSGAAQGLSEVLAALGTVYFEH--------ILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726
GA L ++ + ++P ++ H +R + S
Sbjct: 145 CEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204
Query: 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE---DG 1783
++ + + DE VR A +L+E LP + VE
Sbjct: 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQR 264
Query: 1784 IFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN 1843
+ + + + E L A + + +G ++ +
Sbjct: 265 TQDQDENVALEACEFWLTL----AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320
Query: 1844 EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQ 1903
+V + ++R+ + + E++P ++ L L ++
Sbjct: 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKE 377
Query: 1904 VAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
LG + + + LP +IP L + L D A R C LS
Sbjct: 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHALEDDQT 2017
+++ L+ + + DS V+E+A AF+TL + A + + I+ TL+ A Q
Sbjct: 438 TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQH 497
Query: 2018 SDTAL 2022
+ +
Sbjct: 498 KNLLI 502
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-25
Identities = 102/687 (14%), Positives = 218/687 (31%), Gaps = 66/687 (9%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194
L L +YN A AL ++ + + + + L + R
Sbjct: 133 LCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFK-HSSPKIR 191
Query: 1195 QGIALALHSAADVLRTKDLPVIMTFL--ISRALADTNADVRGRMLNAGIMIIDKHGRDNV 1252
++ + I +F+ + D +VR + A +M+++ +
Sbjct: 192 SHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251
Query: 1253 SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP 1312
+ I E L + +E V F LA+ P V+ + L L
Sbjct: 252 PHMHNIVEYMLQRTQDQDEN---VALEACEFWLTLAEQ-----PICKDVLVRHLPKL--- 300
Query: 1313 SEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD--KYGERRGAAFGLAGVVKGFG 1370
+ ++ + S D + R+ +A L + +
Sbjct: 301 -------IPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR 353
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430
L I L+E L +E +L + E + PY+ +++P L+ S
Sbjct: 354 DELLPH--ILPLLKELLFHHEW-VVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS 410
Query: 1431 DQVVAVREAAECA----ARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486
D+ VR A ++SQ +K ++ LLK + D R ++++ +
Sbjct: 411 DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE 470
Query: 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE-----IASLVPT 1541
A +L L I+ L + K A+ + + + I L+P
Sbjct: 471 EEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPP 530
Query: 1542 LLMGLTDPNDHTKYSLDIL---------LQTTFVNTVDAPSLALLVPIVHRGLRERSAET 1592
L+ D K +L LQ+ F+ + P V +V + L +
Sbjct: 531 LIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCE-PVYQRCVNLVQKTLAQAMLNN 589
Query: 1593 KKK-------------AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 1639
+ A ++ + + + + +L + + + D +PEVR +
Sbjct: 590 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 649
Query: 1640 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNV--ERSGAAQGLSEVLAALGTV---YF 1694
+G L + + P + ++ + N + A + E+ +G Y
Sbjct: 650 FALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYI 709
Query: 1695 EHILPDIIRNCSHQRA--SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD-ENE 1751
+L ++ + ++ + L + LQQ + L + +
Sbjct: 710 PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDN 769
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLP 1778
+D+A ++ + + +
Sbjct: 770 EEKDSAFRGICTMISVNPSGVIQDFIF 796
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 2e-22
Identities = 108/749 (14%), Positives = 233/749 (31%), Gaps = 76/749 (10%)
Query: 1105 AVHDPEKSVAEAAEDIWDRYGY--DFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYP 1162
P+ ++ + ++ DF + L + R + L + +
Sbjct: 21 ESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF 80
Query: 1163 DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLIS 1222
+ ++ +I+ L D+ L R + + + + A ++ P ++ L S
Sbjct: 81 QNFPNGVTD----FIKSECLNNIG-DSSPLIRATVGILITTIASKGELQNWPDLLPKLCS 135
Query: 1223 RALADTNADVRGRMLNAGIMIID---KHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279
++ G + D D + I + +R
Sbjct: 136 LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK--IRSH 193
Query: 1280 VVIFTGALAKHLAKDD-PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
V + + + ++ L + V++ V L L++ D
Sbjct: 194 AVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ +++ +++ + + A +L + I + + G
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEF------WLTLAEQPICKDVLVRHLPKLIPVLVNG 307
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458
+ + G + + +R+ + A + + + +
Sbjct: 308 MKYSDIDIILLKGDVEGGSGGDD--------TISDWNLRKCSAAALDVLANVYRDELLPH 359
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+LP L + L W K+S + +LGA+A Q + LP+++P L + L+D V+S
Sbjct: 360 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSI 419
Query: 1519 GQTALQQ----VGSVIKNPEIASLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVD 1570
L + V S + + L+ LL + D N + + L + T
Sbjct: 420 TCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE--ACTEL 477
Query: 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD 1630
P LA ++ + + + +G + V + YI +L+P + +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 1631 ---------PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVE------- 1674
P+ E S A A+ S E + V+ + L N
Sbjct: 538 LKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEA 597
Query: 1675 ------------RSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722
SG A+GL + L V +IL + + + VR L
Sbjct: 598 PDKDFMIVALDLLSGLAEGLGGNIEQL--VARSNILTLMYQCMQDKMPEVRQSSFALLGD 655
Query: 1723 LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-------YATTSLPL 1775
L ++ + + +P + L E SV + A A + Y L
Sbjct: 656 LTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQ 715
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804
L+ + + +++ +G L +
Sbjct: 716 LVEIINRPNTPKT--LLENTAITIGRLGY 742
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 4e-06
Identities = 30/181 (16%), Positives = 62/181 (34%), Gaps = 21/181 (11%)
Query: 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRK----LGERVLPSIIPILSRGLKDPSASR 1939
+ +++ L S R ++G L V+ V I + D S
Sbjct: 47 NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLI 106
Query: 1940 RQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG-- 1997
R V I ++ + + +L+P + + L E A A + + +
Sbjct: 107 RATVGILITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI 162
Query: 1998 ------MQAIDEIVPTLLHALEDD--QTSDTALDGLKQILSVRTTAVLPHI---LPKLVH 2046
+ ++ ++P L + + A+ + Q + RT A++ HI + L
Sbjct: 163 LDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFA 222
Query: 2047 L 2047
L
Sbjct: 223 L 223
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 101 bits (251), Expect = 2e-21
Identities = 110/710 (15%), Positives = 234/710 (32%), Gaps = 92/710 (12%)
Query: 1140 SHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 1199
+ NV+ A+ AL + Q +S+ ++ I + + + R
Sbjct: 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAV-RLAALN 203
Query: 1200 ALHSAADVLRTKD-----LPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
AL + ++ +M + A + +V+ I+ K+ +
Sbjct: 204 ALADSLIFIKNNMEREGERNYLMQVVCE-ATQAEDIEVQAAAFGCLCKIMSKY----YTF 258
Query: 1255 LFPIFENYLN--KKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP 1312
+ P E L A+ + D V V F + + ++ L N
Sbjct: 259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNF- 317
Query: 1313 SEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSD--KYGERRGAAFGLAGVVKGFG 1370
+ S++D P L++ L Q + + A L + G
Sbjct: 318 --------------ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG 363
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQMLPLLLVAF 1429
L+ + + + + N + RE A++AF + + ++ YV Q LP +L
Sbjct: 364 NHILEP--VLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420
Query: 1430 SDQVVAVREAAECAARAMMSQLS-----AQGVKLVLPSLLKGLEDKAWRTKQSS----VQ 1480
+DQ + V+E + ++ Q + V+ + L GL+D + + +
Sbjct: 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHP-KVATNCSWTIIN 479
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN------PE 1534
L+ +A P + P +V L + + A + ++++
Sbjct: 480 LVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARAS-AFSALTTMVEYATDTVAET 538
Query: 1535 IASLVPTLLMGLTDPNDHTKYSLDIL-------LQTTFVNTVDA----------PSLALL 1577
AS+ ++ L + L + LQ+ + + A P +L
Sbjct: 539 SASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADML 598
Query: 1578 VPIVHRGLRER-SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636
+ + R L ++ SA + + + + + + Y+ P + K L V
Sbjct: 599 MGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEKYLETFSPYLLKALNQVDSPVS 656
Query: 1637 SVAARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSN-VERSGAAQGLSEVLAALGTV 1692
A I + + E+ +++ L + + N+ + ++ + +G
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA- 715
Query: 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES 1752
F L DI+ C + P + ++ +Y +VL A+LD
Sbjct: 716 DFIPYLNDIMALC-----------VAAQNTKPENGTLEALDYQIKVLEAVLDAYV----G 760
Query: 1753 VRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
+ L Y T + ED +++V L+GD+
Sbjct: 761 IVAGLHDKPEALFP-YVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 91.4 bits (226), Expect = 2e-18
Identities = 64/464 (13%), Positives = 139/464 (29%), Gaps = 79/464 (17%)
Query: 1626 KVLVDPIPEVRSVAARAIGSLIR-GMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS- 1683
LV P + + AA+ I ++ + +P+L+ ++D ++ + + L
Sbjct: 102 TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGY 161
Query: 1684 --EVLAALGTVYFEH---ILPDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQF--QNY 1734
E IL I++ + +VR L + +
Sbjct: 162 MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE 221
Query: 1735 LQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE----DGIFNDNWR 1790
++ + + E+ V+ AA G ++ Y T P + A+ + + N +
Sbjct: 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281
Query: 1791 IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850
+ +VE ST I L +
Sbjct: 282 VASMTVEFW-------------------------STICEEEIDIAYELAQFPQSPLQSYN 316
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSE---RRQVAGR 1907
S +K+++P L+N L + AG
Sbjct: 317 FALSS-----------------------IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGA 353
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967
L + G +L ++ + + + + R+ + +M K Q ++ + +
Sbjct: 354 CLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413
Query: 1968 PTIRTALCDSILEVRESAGLAFSTLFKS-----AGMQAIDEIVPTLLHALEDDQ------ 2016
P+I + D L+V+E+ + S Q + +V L L+D
Sbjct: 414 PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNC 473
Query: 2017 --TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSYVSLYLLL 2058
T ++ L + P ++ L+ + +
Sbjct: 474 SWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNAR 517
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 4e-17
Identities = 107/782 (13%), Positives = 232/782 (29%), Gaps = 99/782 (12%)
Query: 1305 LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAG 1364
L + + +P + ++ + L + D L+ + E R A
Sbjct: 10 LENSILSPDQNIRLTSETQLK---KLSNDNFLQFAGLSSQVLIDENTKLEGRILA----- 61
Query: 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 1424
L +N ++ + + ++ Q+
Sbjct: 62 ---------------------ALTLKNELVSKDSVKTQ-QFAQRWITQVSPEAKNQIKTN 99
Query: 1425 LLVAFSDQVVAVRE-AAECAARAMMSQLSAQGVKLVLPSLLKGLE-DKAWRTKQSSVQLL 1482
L A + AA+ A +L ++ ++ ++ K++S+ L
Sbjct: 100 ALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLAL 159
Query: 1483 GAMAYCAPQQLSQCLPKIVPKLTEVL-----TDTHPKVQSAGQTALQQVGSVIKN----- 1532
G M A Q + L ++ T+T V+ A AL IKN
Sbjct: 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMERE 219
Query: 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD--APSLALLV-PIVHRGLRERS 1589
E L+ + + + + L P + + + ++ +
Sbjct: 220 GERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPN 279
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
+ + +C + + + + I +V
Sbjct: 280 DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDV-------------- 325
Query: 1650 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQR 1709
N +L++ + + D+ NV A L G E +L + +N +
Sbjct: 326 --VPNLLNLLTRQNEDPEDDDWNV-SMSAGACLQLFAQNCGNHILEPVLEFVEQNITADN 382
Query: 1710 ASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768
R+ + F + VQ Y+ Q LP+IL+ + D++ V++ + +
Sbjct: 383 WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSV 442
Query: 1769 A-----TTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1823
A LP ++ A G+ D+ ++ + + L+E ++
Sbjct: 443 AESIDPQQHLPGVVQACLIGL-QDHPKVATN------------CSWTIINLVEQLAEATP 489
Query: 1824 ASTEAHGRAIIEVLGR-----DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT 1878
+ A+++ L D A+ + + + +I
Sbjct: 490 SPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDK 549
Query: 1879 LKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---SIIPILSRGLKDP 1935
L + M V N L A S E + L ++RK V P ++ + R L+
Sbjct: 550 LGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKK 609
Query: 1936 SASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKS 1995
++ + +A++ +++ P + AL V +A + + S
Sbjct: 610 DSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNS 669
Query: 1996 AGMQA---IDEIVPTLLHALEDDQTSD----TALDGLKQILSVRTTAVLPH---ILPKLV 2045
D ++ L + + L I S +P+ I+ V
Sbjct: 670 LEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCV 729
Query: 2046 HL 2047
Sbjct: 730 AA 731
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 1e-12
Identities = 91/733 (12%), Positives = 206/733 (28%), Gaps = 94/733 (12%)
Query: 961 LFERIVNGLTVSCKSGPLPVDSFTFVFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPL 1020
+ IV G + S + + + + + I + +R G + ++Q++ +
Sbjct: 180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE 239
Query: 1021 PRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKDVHVRMACLNA 1080
+ L ++ ++ + + + L + + + + V +
Sbjct: 240 VQAAAFGCLCKIMSKYYTF---MKPYMEQALYALT-------IATMKSPNDKVASMTVEF 289
Query: 1081 VKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALS 1140
I E + S + + S+ + ++ +
Sbjct: 290 WSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED------- 342
Query: 1141 HSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200
++NV ++A L + I + I W R+ +A
Sbjct: 343 -DDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA---------DNWRNREAAVMA 392
Query: 1201 LHSAAD----VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--DNVSL 1254
S D V RT + + +++ + D + V+ I D D
Sbjct: 393 FGSIMDGPDKVQRTYYVHQALPSILN-LMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD-----PKVHAVVDKLLDVL 1309
L + + D K V L + LA+ A+VD L+
Sbjct: 452 LPGVVQA-CLIGLQDHPK---VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAA 507
Query: 1310 NTPS----------EAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDK-------- 1351
N A+ V + ++ + ++ +L + +
Sbjct: 508 NRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQ 567
Query: 1352 -YGERRGAAFGLAGVVKGFGISSLKKYG--IAATLREGLADRNSAKRREGALLAFECLCE 1408
E + + V SS++ + L ++SA + A L
Sbjct: 568 SLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAA 627
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL---VLPSLLK 1465
LG+ FE Y+ P LL A + V A + + L + ++ L +
Sbjct: 628 SLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQ 687
Query: 1466 GLEDKAWRT--KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTAL 1523
+ + R K + + + G +A L I+
Sbjct: 688 MISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQ 747
Query: 1524 QQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHR 1583
+V + ++ GL D + + + Q + +
Sbjct: 748 IKV-----LEAVLDAYVGIVAGLHDKPEALFPYVGTIFQ-------------FIAQVAED 789
Query: 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPI--PEVRSV 1638
T + A ++G++ ++ P I ++ +K+ + +
Sbjct: 790 PQLYSEDATSRAAVGLIGDIAAMF--PDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDT 847
Query: 1639 AARAIGSLIRGMG 1651
A A R +
Sbjct: 848 ARWAREQQKRQLS 860
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 2e-12
Identities = 85/685 (12%), Positives = 195/685 (28%), Gaps = 101/685 (14%)
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQS 1477
+ LL + +R +E + +LS + L E+ +
Sbjct: 5 EFAQLLENSILSPDQNIRLTSE----TQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRIL 60
Query: 1478 SVQLL-----GAMAYCAPQQLSQCLPKIVP--------KLTEVLTDTHPKVQSAGQTALQ 1524
+ L + Q + + ++ P L P++ +A +
Sbjct: 61 AALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIA 120
Query: 1525 QVGSV-IKNPEIASLVPTLLMGLTDPNDHTKY--SLDILLQTTFVNTVDAPSL-----AL 1576
+ + + + L+ ++ SL L + +L +
Sbjct: 121 AIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNI 180
Query: 1577 LVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635
L+ IV E S + A + + + + L+ V + EV
Sbjct: 181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEV 240
Query: 1636 RSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695
++ A + ++ P + L + + A+ + F
Sbjct: 241 QAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVE----------FW 290
Query: 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRD 1755
+ + + +++ A L + + S+ N L +L + D++ +V
Sbjct: 291 STICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN-LLNLLTRQNEDPEDDDWNVSM 349
Query: 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815
+A + ++ L +L VE I DNWR R+++V G ++
Sbjct: 350 SAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIM------------ 397
Query: 1816 EGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875
+G + + L +L + +D SL V++ I +
Sbjct: 398 ------DGPDKVQRTYYVHQAL-----PSILNLM----NDQSLQVKETTAWCIGRIADSV 442
Query: 1876 PKTL--KEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV-------LPSIIP 1926
+++ ++ +P ++ + L + + LV +L E P+++
Sbjct: 443 AESIDPQQHLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVD 501
Query: 1927 ILSRGLKDPSASRR-QGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC---------- 1975
L + M + + + L
Sbjct: 502 GLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQL 561
Query: 1976 --DSILEVRESAGLAFSTL------FKSAGMQAIDEIVPTLLHALEDDQTSD------TA 2021
+ ++E + L S+ D ++ LE ++ A
Sbjct: 562 TLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYA 621
Query: 2022 LDGLKQILSVRTTAVLPHILPKLVH 2046
+ L L L P L+
Sbjct: 622 ISALAASLGKGFEKYLETFSPYLLK 646
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 99.2 bits (246), Expect = 8e-21
Identities = 128/897 (14%), Positives = 266/897 (29%), Gaps = 111/897 (12%)
Query: 1108 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSNY--NVRLAAAEALATALDEYPDS 1164
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 12 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71
Query: 1165 IQGSLSTLFSLYIRDI----------GLGGDNVDAGWLGRQGIALALHSAADVLRTKDLP 1214
I+ + + LG + A + P
Sbjct: 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP----SSASQCVAGIACAEIPVNQWP 127
Query: 1215 VIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENY----LNKKASDE 1270
++ L++ TN + M + + I +D N + + E
Sbjct: 128 ELIPQLVANV---TNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE 184
Query: 1271 EKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT----PSEAVQRAVSSCLSP 1326
E + V+ + K + + ++ V+ P V+ A L
Sbjct: 185 EPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVK 243
Query: 1327 LMQS----MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAAT 1382
+M M+ + + + MKSD F + +
Sbjct: 244 IMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI--------EFWSNVCDEE----- 290
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
+ + +A++ + + + P + Q L D +AA
Sbjct: 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPKIV 1501
+ + V VLP + + +++ WR + ++V G + P QL + + +
Sbjct: 351 CLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM 410
Query: 1502 PKLTEVLTDTHPKVQSA-----GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYS 1556
P L E++ D V+ G+ + I + +A L+ L+ GL+
Sbjct: 411 PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNV 470
Query: 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616
A L +K + +
Sbjct: 471 CWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG--HQNNLRSSA 528
Query: 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS 1676
L+ VK D P V+ + L + + S + N +S
Sbjct: 529 YESLMEIVKNSAKDCYPAVQKTTLVIMERL------QQVLQMESHIQSTSDRIQFNDLQS 582
Query: 1677 GAAQGLSEVLAALGTVYFEHILPDIIR------NCSHQRASVRDGYLTLFKYLPRSLGVQ 1730
L VL + I ++ + V++ L L LG +
Sbjct: 583 LLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE 642
Query: 1731 FQNYLQQVLPAILDGLAD-ENESVRDAALG-------AGHVLVEHYATTSLPLLLPAVED 1782
F Y++ P + GL + V AA+G A + + + LLL + +
Sbjct: 643 FLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN 702
Query: 1783 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842
+ + ++ + + GD+ + G + + ++ L + +
Sbjct: 703 ENVHRS--VKPQILSVFGDIALAI----------------GGEFKKYLEVVLNTLQQASQ 744
Query: 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIV-------ANTPKTLKEIMPVLMN-----TL 1890
+V + Y + D +R++ L + IV N + + P +
Sbjct: 745 AQVDKSDYDMV-DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDH 803
Query: 1891 ISSLASSSSERRQVAGRALGELVRKLGERVL------PSIIPILSRGLKDPSASRRQ 1941
I+ + A +G+L G+ VL P I +L+ G + + +
Sbjct: 804 IAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKT 860
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 5e-17
Identities = 115/804 (14%), Positives = 250/804 (31%), Gaps = 128/804 (15%)
Query: 1305 LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAG 1364
+L+ +P A L ++ + PT + L L R AA
Sbjct: 6 ILEKTVSPDRLELEAAQKFLE---RAAVENLPTFLVELSRVLANPGNSQVARVAA----- 57
Query: 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 1424
++ L ++ + + ++ + ++
Sbjct: 58 ---------------GLQIKNSLTSKDPDIKAQYQ--------QRWLAIDANARREVKNY 94
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 1482
+L + A++C A +++ ++P L+ + + K+S+++ +
Sbjct: 95 VLHTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154
Query: 1483 GAMA-YCAPQQLSQCLPKIVPKLTEVLTDTHP--KVQSAGQTALQQVGSVIK-NPEIASL 1538
G + P+QL +I+ + + + P V+ A AL K N + S
Sbjct: 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE 214
Query: 1539 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD------APSLA-LLVPIVHRGLRERSAE 1591
++ + + + + V + + L I ++ E
Sbjct: 215 RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE 274
Query: 1592 TKKKAAQIVGNMCSLVTE-------------PKDMIP--YIGLLLPEVKKVLVDPIPE-- 1634
+ + N+C + P + Y L + +L + +
Sbjct: 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334
Query: 1635 ---------VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
A + L ++ P ++ ++ + +K+ + R A +
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR-YRDAAVMAFGCI 393
Query: 1686 LAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN--YLQQVL 1739
L +P +I VRD + L N YL +L
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453
Query: 1740 PAILDGLADENESVRDAALGAGHVLVEH---------------------YATTSLPLLLP 1778
+++GL V A L E + LL
Sbjct: 454 QCLIEGL-SAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE 512
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD--DEGASTEAHGRAIIEV 1836
+ + N +R S+ E L +++ A A+ + + I
Sbjct: 513 TTDRPDGHQN-NLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQST 571
Query: 1837 LGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS 1896
R + N++ + L +V V + +I V+M +L+ S
Sbjct: 572 SDRIQFNDLQSLLCATLQNVLRKV--------------QHQDALQISDVVMASLLRMFQS 617
Query: 1897 S--SSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951
+ S ++ A A+ LV LG + + P L GLK+ + + +GL +
Sbjct: 618 TAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDL 677
Query: 1952 ASAGKSQLLSFMDELIPTIRTAL--CDSILEVRESAGLAFSTLFKSAG---MQAIDEIVP 2006
A +S ++ F DE++ + L + V+ F + + G + ++ ++
Sbjct: 678 CRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLN 737
Query: 2007 TLLHAL--EDDQTSDTALDGLKQI 2028
TL A + D++ +D L ++
Sbjct: 738 TLQQASQAQVDKSDYDMVDYLNEL 761
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 5e-12
Identities = 80/555 (14%), Positives = 166/555 (29%), Gaps = 75/555 (13%)
Query: 1144 YNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203
+N AA L D I + +I++ W R +A
Sbjct: 342 WNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKN---------PDWRYRDAAVMAFGC 392
Query: 1204 AADVLRTKDLPVIMTFLIS---RALADTNADVRGRMLNAGIMIIDKHGRDNVS-----LL 1255
+ L ++ + + D + VR I + ++ L
Sbjct: 393 ILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452
Query: 1256 FPIFENYLNKKASDEEK--------YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLD 1307
L+ + + E + +V KLL+
Sbjct: 453 LQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE 512
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPT---LVSRLLDQLMK----------SDKYGE 1354
+ P SS LM+ +++ A V + +M+ +
Sbjct: 513 TTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTS 572
Query: 1355 RRGAAFGLAGVVKGFGISSLKKYG-----------IAATLREGLADRNSAKRREGALLAF 1403
R L ++ + L+K +A+ LR + S +E AL+A
Sbjct: 573 DRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAV 632
Query: 1404 ECLCEKLGRLFEPYVIQMLPLLLVAFSDQV-VAVREAAECA----ARAMMSQLSAQGVKL 1458
L E LG F Y+ P L + + V AA RA+ S +
Sbjct: 633 STLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNII-PFCDE 691
Query: 1459 VLPSLLKGLEDKAWRT--KQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 1516
V+ LL+ L ++ K + + G +A + + L ++ L + K
Sbjct: 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSD 751
Query: 1517 SAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576
L ++ ++ GL ++ + ++ L+
Sbjct: 752 YDMVDYLNELRE-----SCLEAYTGIVQGLKGDQENVHPDVMLVQP------RVEFILSF 800
Query: 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVDPIP 1633
+ I + + AA ++G++C+ KD++ + ++ + +
Sbjct: 801 IDHIAGD--EDHTDGVVACAAGLIGDLCTAF--GKDVLKLVEARPMIHELLTEGRRSKTN 856
Query: 1634 EVRSVAARAIGSLIR 1648
+ +++A A L +
Sbjct: 857 KAKTLARWATKELRK 871
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 68.4 bits (166), Expect = 2e-11
Identities = 103/690 (14%), Positives = 195/690 (28%), Gaps = 107/690 (15%)
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 1482
+L EAA+ + + + + + L L + L + + ++ +
Sbjct: 6 ILEKTVSPDRLELEAAQ----KFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQI 61
Query: 1483 ------------GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
+ ++ + L + SA Q + I
Sbjct: 62 KNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRPSSASQCVAGIACAEI 121
Query: 1531 KNPEIASLVPTLLMGLTDPND--HTKYSLDILLQTTF---VNTVDAPSLALLVPIVHRGL 1585
+ L+P L+ +T+PN H K S + ++ + +G+
Sbjct: 122 PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM 181
Query: 1586 R--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643
R E S K A + N D ++ V + P VR A + +
Sbjct: 182 RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 241
Query: 1644 GSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703
++ + + L + A QG+ D+
Sbjct: 242 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN------VCDEEMDLAI 295
Query: 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763
S R T Y +L L Q L + D++ + AA +
Sbjct: 296 EASEAAEQGRPPEHTSKFYAKGALQYLVPI-LTQTLTKQDENDDDDDWNPCKAAGVCLML 354
Query: 1764 LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1823
L +P +LP +++ I N +WR R ++V G +LEG +
Sbjct: 355 LATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFG------------CILEGPEPSQL 402
Query: 1824 ASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHV------WKTIVANTPK 1877
+ + L + D S+ VR A A
Sbjct: 403 KPLV---------------IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447
Query: 1878 TLKEIMPVLMNTL-------------ISSLASSSSERRQVAGRALGELVRKLGERVLPSI 1924
L ++ L+ L SSLA ++ E VA L I
Sbjct: 448 YLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCL-SSSFELI 506
Query: 1925 IPILSRGLKDPSASR---RQGVCIGLSEVMASAGKS---QLLSFMDELIPTIRTAL---- 1974
+ L P + R L E++ ++ K + ++ ++ L
Sbjct: 507 VQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMES 566
Query: 1975 ----CDSILEVRESAGLAFSTL-------FKSAGMQAIDEIVPTLLHALEDDQTSDT--- 2020
++ + L +TL +Q D ++ +LL + S
Sbjct: 567 HIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQE 626
Query: 2021 ----ALDGLKQILSVRTTAVLPHILPKLVH 2046
A+ L ++L + P L
Sbjct: 627 DALMAVSTLVEVLGGEFLKYMEAFKPFLGI 656
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 92.6 bits (229), Expect = 1e-18
Identities = 107/661 (16%), Positives = 194/661 (29%), Gaps = 197/661 (29%)
Query: 1244 IDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVD 1303
+D + +FE+ ++ D+ + I + H+ V
Sbjct: 14 HQYQYKD----ILSVFEDAFVDNFDCKDVQDMPKS---ILSKEEIDHIIMSKDAVSGT-L 65
Query: 1304 KLLDVL-NTPSEAVQRAVSSCLSP----LMQSMQDE--APTLVSRL----LDQLMKS--- 1349
+L L + E VQ+ V L LM ++ E P++++R+ D+L
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 1350 ---------DKYGERRGAAFGL---AGVV----KGFGISSLKKYGIAATLREGLADRNSA 1393
Y + R A L V+ G G + +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV----ALDVCLS-------- 173
Query: 1394 KRREGALLAFEC----LCEKLGRLFEP-YVIQMLPLLLVAF-------SDQVVAVR---E 1438
+ L L P V++ML LL SD ++
Sbjct: 174 ---YKVQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 1439 AAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP 1498
+ + R ++ + LVL + + A C
Sbjct: 229 SIQAELRRLLKSKPYENCLLVL--------LNVQ-----NAKAWNAFNL-------SC-- 266
Query: 1499 KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA--SLVPTLLMGLTDPNDHTKYS 1556
KI+ LT T +QV + SL M LT
Sbjct: 267 KIL------LT-----------TRFKQVTDFLSAATTTHISLDH-HSMTLTPDE-----V 303
Query: 1557 LDILLQTTFVNTVDAPSLA-----LLVPIVHRGLRERSA-------ETKKKAAQIVGNMC 1604
+LL+ D P + I+ +R+ A K I+
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-ESS 362
Query: 1605 SLVTEPKDMIP-YIGL-LLPE-VK---KVLV----DPIP-EVRSVAARAIG-SLIRGMGE 1652
V EP + + L + P +L D I +V V + SL+ +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 1653 EN---FPDLVSWLLD-ALKSDNS-NVERSGAAQGLSEVLAALGTVYFEHILPDIIRN--C 1705
E+ P + L+ +K +N + RS + + T + ++P +
Sbjct: 423 ESTISIPSI---YLELKVKLENEYALHRS-----IVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 1706 S----HQRASVRDGYLTLFKYLPRSLGVQFQNY--LQQVL----------PAILDGLAD- 1748
S H + +TLF+ + F ++ L+Q + +IL+ L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV-------FLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 1749 --------ENESVRDAALGA--------GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR 1792
+N+ + + A L+ T L + L A ++ IF + +
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 1793 Q 1793
Q
Sbjct: 588 Q 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 2e-16
Identities = 110/721 (15%), Positives = 205/721 (28%), Gaps = 240/721 (33%)
Query: 723 MSITPKDTYVAF-EKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSSEQGVYIAEIVAAKN 781
KD F + + + DC D+Q P+ +LS E+ I I+ +K+
Sbjct: 14 HQYQYKDILSVFEDAFVDNF-DCK--------DVQDM--PKSILSKEE---IDHIIMSKD 59
Query: 782 TKQSKGR-FRMYEEQDGVDHVGSNHSAKRESANREVSGAGKKD---IGKSTKKADKGKTA 837
R F + + E + V + + + K + +
Sbjct: 60 AVSGTLRLFWTLLSK------------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 838 K----EEARELLLNEEASIREKVQGVQRNLSLML---SALGEMAIANPVFAHSQL----P 886
E R+ L N+ K V R L L AL E+ A V L
Sbjct: 108 MTRMYIEQRDRLYNDNQVFA-KYN-VSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 887 SLVKFV--DPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVDSD 944
+ V +Q + + + + L C + L++ L + SD
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFW---LNLKNCNSPETV---LEMLQKLLYQIDPNWTSRSD 218
Query: 945 L---IPSVGEAAKNKESL---------CLF-------ERIVNGLTVSCKSGPLPVDSFTF 985
I + + + CL + N +SCK
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK----------- 267
Query: 986 VFPIIERILLSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGS 1045
ILL+ + + D + H+
Sbjct: 268 -------ILLTTRFKQVTDFLSAATTTHI------------------------------- 289
Query: 1046 ALNELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIA 1105
+L+ + L P+EV S L + L+ + LP + + ++
Sbjct: 290 SLDHHSMTLTPDEVKSLL-----------LKYLD-------CRPQDLPREVLTTNPRRLS 331
Query: 1106 VHDPEKSVAEAAED---IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAE--ALATALDE 1160
+ +AE+ D WD + + + L + S NV L AE + L
Sbjct: 332 I------IAESIRDGLATWDNWKH---VNCDKLTTIIESS-LNV-LEPAEYRKMFDRLSV 380
Query: 1161 YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFL 1220
+P S L + W + D+ V++ L
Sbjct: 381 FPPSAHIPTILLSLI---------------WFD--------------VIKSDVMVVVNKL 411
Query: 1221 ISRALADTNA------------DVRGRMLNAGIM---IIDKH----GRDNVSLLFPIFEN 1261
+L + +++ ++ N + I+D + D+ L+ P +
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 1262 Y--------LNKKASDEEKYDLVR---------EGVVIFTGALA---------------- 1288
Y L K E+ L R E +
Sbjct: 472 YFYSHIGHHL-KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 1289 -KHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM 1347
++ +DPK +V+ +LD L E + + + L L ++ E + Q+
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL--LRIALMAEDEAIFEEAHKQVQ 588
Query: 1348 K 1348
+
Sbjct: 589 R 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 4e-13
Identities = 92/610 (15%), Positives = 183/610 (30%), Gaps = 154/610 (25%)
Query: 143 HIVMQRSFRERRACKQTFFHLFSQSPDIYKTYTDELKDARIPYKHSPELICLLLEFLSKS 202
HI+M + + F+ L S+ ++ + + +E+ + SP ++ +
Sbjct: 53 HIIMSKD-AVSGT-LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP------IKTEQRQ 104
Query: 203 PSLFEKCRPIFLDIYVKAVLNAKEKPMKGLSESFLPLFTHMSREDFQSIVLPASIKMLKR 262
PS+ + +Y++ + ++ F ++SR + L ++ L+
Sbjct: 105 PSMMTR-------MYIEQR-----DRLYNDNQVFAKY--NVSRLQ-PYLKLRQALLELRP 149
Query: 263 NPEIILES---IGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGALTIIGCLSEKS 319
++++ G K+ + L V LS K L + +
Sbjct: 150 AKNVLIDGVLGSG---KTW---V------ALDVCLSYKVQCKMDFKIFWLNL-KNCNSPE 196
Query: 320 SNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGK-YLNSL------- 371
+ + L+ + Y I + RI + EL + K Y N L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQ 254
Query: 372 -SLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSDL-----LSFFASGLKEK 425
+ F LSC K IL + + K+ D + + L + L
Sbjct: 255 NAKAWNAFNLSC---------K--IL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 426 EALRRGHLRCLRVICTNTDA------VLQVSSLLGPL-IQLVKTGFTKAVQRLDGIYAFL 478
E L + + VL + P + ++ + D + +
Sbjct: 302 EVKS------LLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDN-WKHV 350
Query: 479 IVGKIAAADIKA-----EETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCMACVELLVV 533
K+ I++ E ++ L + +PT ++S + D + V ++V
Sbjct: 351 NCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 534 LLVEHS----HRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITS--------- 580
L ++S T S + + L + H R I+
Sbjct: 410 KLHKYSLVEKQPKESTIS---IPSIYLELKVKL--ENEYALH---RSIVDHYNIPKTFDS 461
Query: 581 ---VP-------------HLSEALLLE----FSN-FLSL--VGEKIIISKT------SDT 611
+P HL E F FL + +KI T S
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 612 DDFVDSQV--PFL----PSVEVQVKTL---LVIASVALARGPSAS-ARVIFCSHHPSIVG 661
+ + P++ P E V + L L R+ + +I
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 662 TGKRDAVWQR 671
+ QR
Sbjct: 582 EAHKQV--QR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 6e-10
Identities = 84/528 (15%), Positives = 160/528 (30%), Gaps = 156/528 (29%)
Query: 1011 YKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNEVASALHGVYTKD 1070
+ HMD Y ++ ++ A + C +V + +K+
Sbjct: 4 HHHMD-------FETGEHQYQYKDILSVFEDAFVDNFD--C-----KDVQDMPKSILSKE 49
Query: 1071 VHVRMACLNAVKCIPAVSTRSLPENIEVSTSL-WIAVHDPEKSVAEAAEDIWDRYGYDF- 1128
+ I + + + L W + E+ V + E++ R Y F
Sbjct: 50 E---------IDHI-----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFL 94
Query: 1129 --------------GTDYSGLFKALSHSN-----YNV-RLAAAEALATALDEYPDSIQGS 1168
Y L + N YNV RL L AL E +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKN- 152
Query: 1169 LSTLFSLYIRDIGLGGDNVDAG--WLGRQGIALALHSAADVLRTKDLPVIMTFLI---SR 1223
+ G+ G +G W+ A DV + + M F I +
Sbjct: 153 ----VLID----GVLG----SGKTWV-----------ALDVCLSYKVQCKMDFKIFWLNL 189
Query: 1224 ALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283
++ V ML + ID + I L + E L++ +
Sbjct: 190 KNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKP--Y 243
Query: 1284 TGALAKHLAKDD---PKVHAVVD---KLLDVLNTPSEAVQRAVSS------CLSPLMQSM 1331
L L + K + K+L L T + V +S+ L ++
Sbjct: 244 ENCL---LVLLNVQNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 1332 -QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR 1390
DE +L+ + LD + L V + + IA ++R+GLA
Sbjct: 299 TPDEVKSLLLKYLD--CRPQD----------LPREVL--TTNPRRLSIIAESIRDGLATW 344
Query: 1391 NSAKRREGALLAFECLCEKLGRLFE-------PYVIQMLPLLLVAFSD------QVVAV- 1436
++ K C+KL + E P + + L F ++++
Sbjct: 345 DNWKHVN---------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 1437 -REAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLG 1483
+ + ++++L SL++ + K+S++ +
Sbjct: 396 WFDVIKSDVMVVVNKLHKY-------SLVEK------QPKESTISIPS 430
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 6e-10
Identities = 96/677 (14%), Positives = 178/677 (26%), Gaps = 245/677 (36%)
Query: 32 DVTSLIRNTEMSPEIASFL--------VDIIFKTFSVYDDRGSRKAVDDVIEKGLGEVTF 83
DV + ++ EI + +F T + +K V++V+ F
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK---F 93
Query: 84 MKT-FAAALVQAMEKQSKFQS---------------HVGCYRL-----LKWSCLL-LSKS 121
+ + Q + +V RL L+ LL L +
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLR-QALLELRPA 150
Query: 122 QFATV------SKNALCRVAAAQASLLHIVMQR--------SFRERRACK------QTFF 161
+ + K + A L + V + + + + + Q
Sbjct: 151 KNVLIDGVLGSGKTWV----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLL 206
Query: 162 HL----FSQSPDIYKTY---TDELKDA--RI----PYKHSPELICLLLEFLS--KSPSLF 206
+ ++ D ++ R+ PY++ CLL+ L ++ +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-----CLLV--LLNVQNAKAW 259
Query: 207 E----KCRPIFL--DIYVKAVLNAK-------EKPMKGL----SESFLPLFTHMSREDFQ 249
C+ + V L+A + L +S L + +D
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-- 317
Query: 250 SIVLPASIKMLKRNPEIILESIGILLKSVNLDLSKYATEILSVVLSQVRHADEGRKTGAL 309
LP +L NP L I ++ L +H + + T
Sbjct: 318 ---LPRE--VLTTNP-RRLSIIAESIRD-GLATWDN-----------WKHVNCDKLT--- 356
Query: 310 TIIGCLSEKSSNPDALEAMFYAIKAVIGGSEGRLAFPYQRIGMVNALQELSNATEGKYLN 369
TII S P MF + +V FP ++
Sbjct: 357 TIIE-SSLNVLEPAEYRKMFDRL-SV---------FP-----------PSAHIPTI---- 390
Query: 370 SLSLTICKFLLSCYKDEGNEEV---KLAILSAVASWAKRSADIIQSDLLSFFASGLKEKE 426
+ L+ + + V KL S V K S I + L+ +
Sbjct: 391 ----LLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLENEY 443
Query: 427 ALRR---GHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLDG-IYAFLIVGK 482
AL R H + ++ L P LD Y+ + G
Sbjct: 444 ALHRSIVDHYNIPKTFDSDD---------LIPP-------------YLDQYFYSHI--GH 479
Query: 483 -IAAADIKAEETVTKEKL-----WSLVSQNEPSLVPTAMISKLSVDD--CMACVELLVVL 534
+ + E + + + K+ D A +L L
Sbjct: 480 HLKNIE-HPERMTLFRMVFLDFRF--------------LEQKIRHDSTAWNASGSILNTL 524
Query: 535 LVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIIT-SVPHLSEALLLEFS 593
++ + I + P E L+
Sbjct: 525 Q-----------------------------QLKFY-----KPYICDNDPKY-ERLVNAIL 549
Query: 594 NFLSLVGEKIIISKTSD 610
+FL + E +I SK +D
Sbjct: 550 DFLPKIEENLICSKYTD 566
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 7e-08
Identities = 76/458 (16%), Positives = 136/458 (29%), Gaps = 125/458 (27%)
Query: 1650 MGEEN--FPDLVSWLLDALKSD--NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
GE + D++S DA + +V+ +L+ +HI+
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-----PKSILS---KEEIDHII------- 55
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL----PAILDGLADENESVRDAALGAG 1761
G L LF L Q ++++VL ++ + E R ++
Sbjct: 56 --MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSM--- 107
Query: 1762 HVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV---ELLGDLLFKVAGTSGKALLEGG 1818
+ Y D ++NDN + +V + L +ALLE
Sbjct: 108 --MTRMYIEQ---------RDRLYNDNQVFAKYNVSRLQPYLKLR--------QALLE-- 146
Query: 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHV-WKTI-VANTP 1876
+ G VLG K +A V + + + W + N+P
Sbjct: 147 -LRPAKNVLIDG-----VLGSGK--TWVAL--DVCLSYKV-QCKMDFKIFWLNLKNCNSP 195
Query: 1877 KTLKEIMPVLMNTL---ISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLK 1933
+T+ E++ L+ + +S + SS + EL R L + + + +L ++
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-LNVQ 254
Query: 1934 DPSASRRQGVCIGLSEVMASAGKSQLL------SFMDELIPTIRTALC----DSILEVRE 1983
+ A A ++L D L T + L E
Sbjct: 255 NAKA------------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 1984 SAGLAFSTLFKSAGMQAID------EIVPTLLHAL-----ED-----DQTSDTALDGLKQ 2027
L L K + D P ++ D D D L
Sbjct: 303 VKSL----LLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 2028 ILSVRTTAVLPH----------ILPKLVHLPLSYVSLY 2055
I+ + P + P H+P +SL
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 5e-07
Identities = 80/552 (14%), Positives = 173/552 (31%), Gaps = 165/552 (29%)
Query: 1371 ISSLKKYGIAATLREGLADR------NSAKRREGALLAFECLCEKLGRLFEPYVIQML-- 1422
+ + + + L+ S G L F L K + + +V ++L
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 1423 --PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQ 1480
L+ E +MM+++ + D+ + Q
Sbjct: 90 NYKFLMSPI---------KTEQRQPSMMTRMYIEQR------------DRLYN----DNQ 124
Query: 1481 LLGAMAYCAPQQLSQCLPKIVPKLTEVLT--DTHPKV-----QSAGQTALQQVGSVIKNP 1533
+ A +S+ + KL + L V +G+T + V +
Sbjct: 125 VF------AKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSY 174
Query: 1534 EIASLVPT----LLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERS 1589
++ + L + N ++ ++ +LQ +D + + LR S
Sbjct: 175 KVQCKMDFKIFWLNLK----NCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHS 229
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
+ + + L+ PY LL VL + ++ A + I
Sbjct: 230 IQAELR---------RLLKSK----PYENCLL-----VL-LNVQNAKAWNAFNLSCKI-- 268
Query: 1650 MGEENFPDLV----SWLLDALKSDN-SNVERSGAAQGLSE-----VLA-ALGTVYFEHIL 1698
L+ + D L + +++ + L+ +L L + L
Sbjct: 269 --------LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD--L 318
Query: 1699 PDIIRNCSHQR-----ASVRDGYLTL--FKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751
P + + +R S+RDG T +K++ + L ++ + L+ L + E
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVL-EPAE 370
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELL-GDLLFKVAGTS 1810
R + + L +F + I + L+ D++
Sbjct: 371 -YR-----------KMF--DRL---------SVFPPSAHIPTILLSLIWFDVIK------ 401
Query: 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWK 1869
SD + H +++E + E ++ + ++ + + + ALH +
Sbjct: 402 --------SDVMVVVNKLHKYSLVE---KQ-PKESTISIPSIYLELKVKLENEYALH--R 447
Query: 1870 TIVA--NTPKTL 1879
+IV N PKT
Sbjct: 448 SIVDHYNIPKTF 459
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 2e-16
Identities = 50/265 (18%), Positives = 100/265 (37%), Gaps = 15/265 (5%)
Query: 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486
++ ++ +REA + A+ + VL L++ L+D W ++++ ++ +A
Sbjct: 1 MSMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIA 60
Query: 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL 1546
L K+ L + A Q+ K + S++P L
Sbjct: 61 KTREDLYEPMLKKLFSLLK---KSEAIPLTQEIAKAFGQMAKE-KPELVKSMIPVLFANY 116
Query: 1547 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606
++ TK ++ L+ + + +A +V L ++ E K A + M
Sbjct: 117 RIGDEKTKINVSYALEE--IAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE- 173
Query: 1607 VTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDAL 1666
K + P+ LP + +L D VR+ A A+ L + +V L+ L
Sbjct: 174 -NSFKYVNPF----LPRIINLLHDGDEIVRASAVEALVHL--ATLNDKLRKVVIKRLEEL 226
Query: 1667 KSDNSNVERSGAAQGLSEVLAALGT 1691
D S++ +G+S +L G
Sbjct: 227 N-DTSSLVNKTVKEGISRLLLLEGH 250
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 78.2 bits (192), Expect = 1e-15
Identities = 37/223 (16%), Positives = 87/223 (39%), Gaps = 14/223 (6%)
Query: 1828 AHGRAIIEVLGRDKRNE-VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL 1886
A+G + ++L K +E VL L + D +V + A+ + I + ++ L
Sbjct: 15 ANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKL 74
Query: 1887 MNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIG 1946
+ L S + Q +A G++ ++ E V +IP+L + + V
Sbjct: 75 FSLLKK---SEAIPLTQEIAKAFGQMAKEKPELVKS-MIPVLFANYRIGDEKTKINVSYA 130
Query: 1947 LSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVP 2006
L E+ + M ++ + L E + +A + ++ + ++ +P
Sbjct: 131 LEEIAKANPML-----MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SFKYVNPFLP 184
Query: 2007 TLLHALEDDQTS--DTALDGLKQILSVRTTAVLPHILPKLVHL 2047
+++ L D +A++ L + + + ++ +L L
Sbjct: 185 RIINLLHDGDEIVRASAVEALVHL-ATLNDKLRKVVIKRLEEL 226
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 4e-12
Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 13/230 (5%)
Query: 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQ 1793
Y + VL +++ L D+ +V A+ V+ + P+L ++ + Q
Sbjct: 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQ 88
Query: 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR------DKRNEVLA 1847
+ G + K K+++ + E + L ++
Sbjct: 89 EIAKAFG-QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR 147
Query: 1848 ALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907
+ S + + AL+ + + N+ K + +P ++N L R A
Sbjct: 148 DFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINL----LHDGDEIVRASAVE 203
Query: 1908 ALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKS 1957
AL L L +++ +I L L D S+ + V G+S ++ G S
Sbjct: 204 ALVHLA-TLNDKLRKVVIKRLEE-LNDTSSLVNKTVKEGISRLLLLEGHS 251
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 3e-11
Identities = 41/292 (14%), Positives = 102/292 (34%), Gaps = 53/292 (18%)
Query: 1745 GLADENESVRDAALGAGH----VLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
+ +E +R+A H +++ Y + L L+ ++D D W + ++++ ++
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDD----DLWTVVKNAISIIM 57
Query: 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSV 1860
+ + E +++ L +++ ++ +
Sbjct: 58 VI--------------------AKTREDLYEPMLKKL-----------FSLLKKSEAIPL 86
Query: 1861 RQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV 1920
Q + + P+ +K ++PVL + + + AL E+ + +
Sbjct: 87 TQEIAKAFGQMAKEKPELVKSMIPVLFA----NYRIGDEKTKINVSYALEEIAKANPMLM 142
Query: 1921 LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILE 1980
I+ L + + + + ++ K +++ +P I L D
Sbjct: 143 AS-IVRDFMSMLSSKNREDKLTALNFIEAMGENSFK-----YVNPFLPRIINLLHDGDEI 196
Query: 1981 VRESAGLAFSTLFKSAGMQAIDEIVPTLLHALED--DQTSDTALDGLKQILS 2030
VR SA A L + + ++V L L D + T +G+ ++L
Sbjct: 197 VRASAVEALVHL--ATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 1e-08
Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 18/236 (7%)
Query: 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636
++ + L + K A I+ + T P + L +KK +
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAK--TREDLYEPMLKKLFSLLKK---SEAIPLT 87
Query: 1637 SVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696
A+A G + + E ++ L + + + + L E+ A +
Sbjct: 88 QEIAKAFGQMAKEKPEL-VKSMIPVLFANYRIGDEKT-KINVSYALEEIAKANPML-MAS 144
Query: 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756
I+ D + S + + L ++G Y+ LP I++ L D +E VR +
Sbjct: 145 IVRDFMSMLSSKNREDKLTALNFI----EAMGENSFKYVNPFLPRIINLLHDGDEIVRAS 200
Query: 1757 ALGA-GHV-LVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTS 1810
A+ A H+ + + L + D + + ++ E + LL +S
Sbjct: 201 AVEALVHLATLNDKLRKVVIKRLEELND----TSSLVNKTVKEGISRLLLLEGHSS 252
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 4e-08
Identities = 38/239 (15%), Positives = 86/239 (35%), Gaps = 23/239 (9%)
Query: 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194
L + L + V A + D + L LFSL + + +
Sbjct: 37 LIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKS-----EAIPL----T 87
Query: 1195 QGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSL 1254
Q IA A A +I + + + A +++ + N L
Sbjct: 88 QEIAKAFGQMAKEKPELVKSMIPVLFA--NYRIGDEKTKINVSYA----LEEIAKANPML 141
Query: 1255 LFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSE 1314
+ I ++++ +S + + + F A+ ++ K V+ + +++++L+ E
Sbjct: 142 MASIVRDFMSMLSSKNRE---DKLTALNFIEAMGENSFKY---VNPFLPRIINLLHDGDE 195
Query: 1315 AVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS 1373
V+ + L L D+ +V + L++L + + G++ ++ G SS
Sbjct: 196 IVRASAVEALVHLATL-NDKLRKVVIKRLEELNDTSSL-VNKTVKEGISRLLLLEGHSS 252
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 2e-06
Identities = 39/276 (14%), Positives = 94/276 (34%), Gaps = 29/276 (10%)
Query: 1224 ALADTNADVRGRMLNA----GIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREG 1279
++ + D+R + N I+I+ K+ + L + + D+ V +
Sbjct: 2 SMEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLD--------DDLWT--VVKN 51
Query: 1280 VVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT-PSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
+ +AK ++ KL +L + + + ++ + + + ++
Sbjct: 52 AISIIMVIAKTREDL---YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSM 108
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ L D+ + ++ L + K + I L+ +N +
Sbjct: 109 IPVLFANYRIGDEK-TKINVSYALEEIAKANPMLMAS---IVRDFMSMLSSKNREDKLTA 164
Query: 1399 ALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458
E +G YV LP ++ D VR +A A ++ L+ + K+
Sbjct: 165 LNF-----IEAMGENSFKYVNPFLPRIINLLHDGDEIVRASA-VEALVHLATLNDKLRKV 218
Query: 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494
V+ L+ L D + ++ + + + S
Sbjct: 219 VIK-RLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 3e-14
Identities = 28/210 (13%), Positives = 61/210 (29%), Gaps = 12/210 (5%)
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GISSLKKYGIAATL 1383
+ +Q L + + + A L + +S+ TL
Sbjct: 35 HISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL 94
Query: 1384 REGLADRNSAKRREGALL---AFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440
R + N A + L E + + + + V +P LL+ + +R +
Sbjct: 95 R--FFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSV 152
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500
+ + + P LL L+ K R + + ++ A + +
Sbjct: 153 RDIVNVLSDVVGPL---KMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK-SLSV 208
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
+ + D V++A L
Sbjct: 209 EKTVAPFVGDKDVNVRNAAINVLVACFKFE 238
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 66.7 bits (162), Expect = 1e-11
Identities = 33/221 (14%), Positives = 81/221 (36%), Gaps = 14/221 (6%)
Query: 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504
+SQL SL+ L K ++ +++ L +A +P+ L ++
Sbjct: 33 DEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWC 92
Query: 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKN-------PEIASLVPTLLMGLTDPNDHTKYSL 1557
T +T+P + + +I++ E+++ VP LL+ + D+ + S+
Sbjct: 93 TLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSV 152
Query: 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617
+ D + P++ L+ ++A + + ++ +T
Sbjct: 153 ----RDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECLLVIEYY---ITNAGISPLKS 205
Query: 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658
+ V + D VR+ A + + + G++ +
Sbjct: 206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAA 246
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 4e-06
Identities = 11/85 (12%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
+ + + + Q + +P +L + +++R + +VL + + P
Sbjct: 114 IVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV---GPLKMTP 170
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLL 1803
+ D + + N R R + ++ +
Sbjct: 171 MLLDALKSKNARQRSECLLVIEYYI 195
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 1e-04
Identities = 26/206 (12%), Positives = 63/206 (30%), Gaps = 8/206 (3%)
Query: 1547 TDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606
D H ++ + LL+ E + K ++ + L
Sbjct: 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVEL 117
Query: 1607 VTEPKDMI--PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664
+ + + + + +P + + +R+ + L +G + LLD
Sbjct: 118 IRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL---KMTPMLLD 174
Query: 1665 ALKSDNSNVERSGAAQGLSEVLAALGT--VYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722
ALKS N+ RS + + G + + + + +VR+ + +
Sbjct: 175 ALKSKNARQ-RSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVA 233
Query: 1723 LPRSLGVQFQNYLQQVLPAILDGLAD 1748
+ G Q ++ + +
Sbjct: 234 CFKFEGDQMWKAAGRMADKDKSLVEE 259
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 2e-04
Identities = 34/246 (13%), Positives = 77/246 (31%), Gaps = 25/246 (10%)
Query: 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSP 1326
+DE L +L L D K H A +D L+ + +T ++ L
Sbjct: 32 TDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKW 91
Query: 1327 LMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA--TLR 1384
+ P + ++L+ + +++ ++ A L
Sbjct: 92 CTLRFFETNPAALIKVLELCK-------------VIVELIRDTETPMSQEEVSAFVPYLL 138
Query: 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444
+ R L + +G ++M P+LL A + R
Sbjct: 139 LKTGEAK-DNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKSKNARQRSECLLVI 191
Query: 1445 RAMMSQ--LSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
++ +S V ++ + DK + +++ +L A Q+ + ++
Sbjct: 192 EYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMAD 251
Query: 1503 KLTEVL 1508
K ++
Sbjct: 252 KDKSLV 257
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 5e-14
Identities = 44/306 (14%), Positives = 83/306 (27%), Gaps = 66/306 (21%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + L D N R ++ L ++ L + D N+ R
Sbjct: 22 KLNDDELFRLLDDHNSLKRISSARV---LQLRGGQDAVRLAIEFCSD----KNYIRRDIG 74
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
+LG + + + +L M +D
Sbjct: 75 AFILGQI---------------------KICKKCEDNVFNIL-----------NNMALND 102
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915
S VR A+ P +I+ + S+ R+ A+ +
Sbjct: 103 KSACVRATAIESTAQRCKKNPIYSPKIVEQS----QITAFDKSTNVRRATAFAISVIND- 157
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975
+ IP+L LKDP+ R ++ ++ L
Sbjct: 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQ 202
Query: 1976 DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVRTTA 2035
D EVR A + S ++ L L+ + D ++ ++
Sbjct: 203 DKNEEVRIEAIIGLSYR-------KDKRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLP 255
Query: 2036 VLPHIL 2041
VL +L
Sbjct: 256 VLDTML 261
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 67.1 bits (164), Expect = 7e-12
Identities = 55/310 (17%), Positives = 99/310 (31%), Gaps = 48/310 (15%)
Query: 1492 QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551
+QC +L +L D + + + LQ G V + +D N
Sbjct: 16 LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNY 68
Query: 1552 HTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP 1610
+ IL Q + +L + L ++SA + A + C
Sbjct: 69 IRRDIGAFILGQIKICKKCEDNVFNILN---NMALNDKSACVRATAIESTAQRCKKNPIY 125
Query: 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDN 1670
++ + + D VR A AI + N + L++ LK N
Sbjct: 126 SP------KIVEQSQITAFDKSTNVRRATAFAISVI-------NDKATIPLLINLLKDPN 172
Query: 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730
+V R+ AA ++ + I + + VR + L
Sbjct: 173 GDV-RNWAAFAIN--INKYDN---SDIRDCFVEMLQDKNEEVRIEAI-------IGLS-Y 218
Query: 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR 1790
++ ++VL + D L V D + A E T LP+L + D+
Sbjct: 219 RKD--KRVLSVLCDELKKNT--VYDDIIEA---AGELGDKTLLPVLDTMLYK---FDDNE 268
Query: 1791 IRQSSVELLG 1800
I S+++ L
Sbjct: 269 IITSAIDKLK 278
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 59/335 (17%), Positives = 102/335 (30%), Gaps = 67/335 (20%)
Query: 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALAL 1201
SN + A++ + L L D L R
Sbjct: 2 SNTYQKRKASKEYGLYNQCKKLNDD-ELFRLLD-------------DHNSLKR------- 40
Query: 1202 HSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNA--GIMIIDKHGRDNVSLLFPIF 1259
S+A VL+ + + I +D N R I I K + ++L +
Sbjct: 41 ISSARVLQLRGGQDAVRLAI-EFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMA 99
Query: 1260 ENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRA 1319
N D+ VR + + A+ K+ +V++ S V+RA
Sbjct: 100 LN-------DKSAC--VRATAI---ESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRA 147
Query: 1320 VSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379
+ +S + + L+ L+K R AAF + I+ I
Sbjct: 148 TAFAISVI------NDKATIPLLI-NLLKDPNGDVRNWAAFAI-------NINKYDNSDI 193
Query: 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
E L D+N R E A++ L + ++L +L V
Sbjct: 194 RDCFVEMLQDKNEEVRIE-AIIG-------LSYRKDK---RVLSVLCDELKKNTVYDD-- 240
Query: 1440 AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474
A +L + + VL ++L +D T
Sbjct: 241 ---IIEAAG-ELGDKTLLPVLDTMLYKFDDNEIIT 271
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 8e-14
Identities = 63/385 (16%), Positives = 143/385 (37%), Gaps = 37/385 (9%)
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAA-LGTVYFEHILPDIIRNCSHQRA 1710
++ +++L L ++ S A+Q ++ + A + + ++P ++ N ++ +
Sbjct: 85 ANARREVKNYVLQTLGTETYR--PSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS 142
Query: 1711 SV--RDGYLTLFKYLPRSL-GVQFQNYLQQVLPAILDGLADENES--VRDAALGAGHVLV 1765
+ ++ L Y+ + + Q Q+ ++L AI+ G+ E S V+ AA A +
Sbjct: 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202
Query: 1766 EHYATTSL-----PLLLPAVEDGIFNDNWRIRQSSVELLGDLLFK--------VAGTSGK 1812
E ++ V + + R+R ++++ L ++ +
Sbjct: 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA 262
Query: 1813 ALLEG-GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871
+E SD + + + IE E+ A+ + +
Sbjct: 263 ITIEAMKSDIDEVALQG-----IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK----- 312
Query: 1872 VANTPKTLKEIMPVLMNTLISSL---ASSSSERRQVAGRALGELVRKLGERVLPSIIPIL 1928
L+ ++P+L TL + AG L L + ++P ++P +
Sbjct: 313 -FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 371
Query: 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988
+K+P R + ++ SQL + + +PT+ + D + VR++A
Sbjct: 372 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWT 431
Query: 1989 FSTLFKSAGMQAI-DEIVPTLLHAL 2012
+ + AI D + LL L
Sbjct: 432 VGRICELLPEAAINDVYLAPLLQCL 456
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 8e-07
Identities = 60/490 (12%), Positives = 145/490 (29%), Gaps = 81/490 (16%)
Query: 1305 LLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAG 1364
+L+ +P A L ++ + PT + L L R AA
Sbjct: 6 ILEKTVSPDRLELEAAQKFLE---RAAVENLPTFLVELSRVLANPGNSQVARVAA----- 57
Query: 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPL 1424
++ L ++ + + ++ + ++
Sbjct: 58 ---------------GLQIKNSLTSKDPDIKAQYQ--------QRWLAIDANARREVKNY 94
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLL 1482
+L + A++C A +++ ++P L+ + + K+S+++ +
Sbjct: 95 VLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAI 154
Query: 1483 G-AMAYCAPQQLSQCLPKIVPKLTEVLTDTHP--KVQSAGQTALQQVGSVIK-NPEIASL 1538
G P+QL +I+ + + + P V+ A AL K N + S
Sbjct: 155 GYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE 214
Query: 1539 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVD------APSLALLV-PIVHRGLRERSAE 1591
++ + + + + V + + + I ++ E
Sbjct: 215 RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE 274
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIP---------------YIGLLLPEVKKVLVDPIPE-- 1634
+ + N+C + Y L + +L + +
Sbjct: 275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQD 334
Query: 1635 ---------VRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
A + L ++ P ++ ++ + +K+ + R A +
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR-YRDAAVMAFGCI 393
Query: 1686 LAALGTVYFEH----ILPDIIRNCSHQRASVRDGYL----TLFKYLPRSLGVQFQNYLQQ 1737
L + +P +I VRD + + LP + YL
Sbjct: 394 LEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA--AINDVYLAP 451
Query: 1738 VLPAILDGLA 1747
+L +++GL+
Sbjct: 452 LLQCLIEGLS 461
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-06
Identities = 43/322 (13%), Positives = 101/322 (31%), Gaps = 45/322 (13%)
Query: 1391 NSAKRREGALLAFECLCEKL-GRLFEPYVIQMLPLLLVAF--SDQVVAVREAAECAARAM 1447
++ +E L A +C+ + + ++L ++ + V+ AA A
Sbjct: 142 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNS 201
Query: 1448 MSQLSAQGVK-----LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
+ A K ++ + + + R + +++Q L + Q + + +
Sbjct: 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALF 261
Query: 1503 KLTEVLTDT--------------------HPKVQSAGQTALQQVGSVIKNPEIAS----- 1537
+T + A + A Q + A
Sbjct: 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQY 321
Query: 1538 LVPTLLMGLTDPNDH------TKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
LVP L LT +++ + + + ++P + ++
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 381
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ A G + P + P + +P + +++ DP VR AA +G + +
Sbjct: 382 YRDAAVMAFGCILEGPE-PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440
Query: 1652 E-----ENFPDLVSWLLDALKS 1668
E L+ L++ L +
Sbjct: 441 EAAINDVYLAPLLQCLIEGLSA 462
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 7e-04
Identities = 55/354 (15%), Positives = 128/354 (36%), Gaps = 45/354 (12%)
Query: 1135 LFKALSHSN--YNVRLAAAEALATALDEY-PDSIQGSLSTLFSLYIRDIGLGGDNVDAGW 1191
L +++ N +++ + EA+ + P+ +Q + + + I+ + + +
Sbjct: 133 LVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV-- 190
Query: 1192 LGRQGIALALHSAADVLRT-KDLPVIMTFL---ISRALADTNADVRGRMLNAGIMIIDKH 1247
+ AL ++ + + D F+ + A + VR L + I+ +
Sbjct: 191 --KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248
Query: 1248 GRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLD 1307
+ + + P + A + ++ +G+ ++ V D+ +D
Sbjct: 249 YQYMETYMGPALFAITIE-AMKSDIDEVALQGIEFWS---------------NVCDEEMD 292
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE------RRGAAFG 1361
+ SEA ++ + + LV L L K D+ + + A
Sbjct: 293 LAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVC 351
Query: 1362 LAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR-LFEPYVIQ 1420
L + + + ++E + + + R+ A++AF C+ E +P VIQ
Sbjct: 352 LMLLATCCEDDIVPH--VLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQ 408
Query: 1421 MLPLLLVAFSDQVVAVREAAECAARAMMS------QLSAQGVKLVLPSLLKGLE 1468
+P L+ D V VR+ A + ++ + +L L++GL
Sbjct: 409 AMPTLIELMKDPSVVVRDTA-AWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 4e-11
Identities = 22/222 (9%), Positives = 75/222 (33%), Gaps = 14/222 (6%)
Query: 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL---SQCLPKIVPKLTEVLT-DTHPKVQ 1516
+ + W+ + +++ ++L SQ ++ ++ D + +
Sbjct: 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAV 78
Query: 1517 SAGQTALQQVGSVIKNPEIAS-----LVPTLLMGLTDPNDHTKYSLDILLQTTFVN---T 1568
+ +++ + +K P + + LL + ++ L T
Sbjct: 79 ALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPL 138
Query: 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKK 1626
+ ++ + ++ ++ + + + Q+ + + ++P V +
Sbjct: 139 ASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQ 198
Query: 1627 VLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
++ D P +R++ + LI+ G F + L + +
Sbjct: 199 IVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 5e-11
Identities = 25/177 (14%), Positives = 58/177 (32%), Gaps = 18/177 (10%)
Query: 1620 LLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENF-----PDLVSWLLDALKSDNSNV 1673
LL ++ D + ++AA+++ + + F + + LLD K +V
Sbjct: 61 LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSV 120
Query: 1674 ERSGAAQGLSEVL----AALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYL----PR 1725
+ L + + E +L DI+ + H+ +R LF
Sbjct: 121 -IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179
Query: 1726 SLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782
+ +V+P ++ + D ++R + + + +E
Sbjct: 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES---FAILIKIFGMNTFVKTLEH 233
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 7e-09
Identities = 32/195 (16%), Positives = 68/195 (34%), Gaps = 14/195 (7%)
Query: 1343 LDQLMKSDKYGERRGA----AFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREG 1398
+ + S K+ +R A + K +S + + + +
Sbjct: 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80
Query: 1399 ALLAFECLCEKLGR--LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV 1456
A + E +C+KL + YV + LL ++ +V EA A +
Sbjct: 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS 140
Query: 1457 KL----VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS----QCLPKIVPKLTEVL 1508
+L +L+ ++ K + + QL A S ++VP + +++
Sbjct: 141 SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIV 200
Query: 1509 TDTHPKVQSAGQTAL 1523
DT P +++ G +
Sbjct: 201 NDTQPAIRTIGFESF 215
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 5e-06
Identities = 21/167 (12%), Positives = 53/167 (31%), Gaps = 9/167 (5%)
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTL--KEIMPVLMNTLISSLASSSSERRQVAGRA 1908
+++ D ++ A + I K+ + ++ L+ + +A
Sbjct: 68 IIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKA 127
Query: 1909 LGELVRKLGERV----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---SQLLS 1961
L + + ++ + +K + R + M +
Sbjct: 128 LLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRY 187
Query: 1962 FMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTL 2008
DE++P + + D+ +R +F+ L K GM + + L
Sbjct: 188 LKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 23/170 (13%), Positives = 56/170 (32%), Gaps = 16/170 (9%)
Query: 1861 RQAAL-HVWKTIVANTPK--TLKEIMPVLMNTLISSLASSSSER-RQVAGRALGELVRKL 1916
R AL W ++++ T K + + L+ + ++ + +A +++ + KL
Sbjct: 33 RVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKL 92
Query: 1917 GERVL-----PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971
+ L K+ S + + L + ++++ I
Sbjct: 93 KTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDIL 152
Query: 1972 TALCDSILEVRESAGLAFSTLFKSAGM-------QAIDEIVPTLLHALED 2014
+ ++R F+ K DE+VP ++ + D
Sbjct: 153 EHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND 202
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 5e-09
Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 54/232 (23%)
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 1479
+ + + + D VR AA L G + + L+K L+D+ ++++
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKDEDAWVRRAAA 71
Query: 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539
LG + + V L + L D V+ + AL Q+G V
Sbjct: 72 DALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAV 114
Query: 1540 PTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL-----VPIVHRGLRERSAETKK 1594
L+ L D + + + A +L + V + + L++ ++
Sbjct: 115 EPLIKALKDEDWFVRIAA-------------AFALGEIGDERAVEPLIKALKDEDGWVRQ 161
Query: 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646
AA +G + ++K+ R VA + +
Sbjct: 162 SAADALGEIGGERV------------RAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 46/231 (19%), Positives = 80/231 (34%), Gaps = 48/231 (20%)
Query: 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRLLDQLMKSDKYGERRG 1357
V+ + L S V+RA + L + DE L+ L D + RR
Sbjct: 19 EKVEMYIKNLQDDSYYVRRAAAYALG----KIGDERAVEPLIKALKD-----EDAWVRRA 69
Query: 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417
AA L + L + L D + R+ A +A LG++ +
Sbjct: 70 AADALG---------QIGDERAVEPLIKALKDEDGWVRQS-AAVA-------LGQIGDE- 111
Query: 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQS 1477
+ + L+ A D+ VR AA A A L G + + L+K L+D+ +QS
Sbjct: 112 --RAVEPLIKALKDEDWFVRIAA---AFA----LGEIGDERAVEPLIKALKDEDGWVRQS 162
Query: 1478 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528
+ LG + ++ + ++ + L+ S
Sbjct: 163 AADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 41/215 (19%), Positives = 80/215 (37%), Gaps = 33/215 (15%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
+ + + L D++ VR AA A L + ++ L+ A++D ++ +R+++
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYA---LGKIGDERAVEPLIKALKD----EDAWVRRAA 70
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
+ LG + + A + L++ D++G ++ LG+ + L D
Sbjct: 71 ADALGQIGDERA---VEPLIKALKDEDGWVR----QSAAVALGQIGDERAVEPLIKALKD 123
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
VR AA L EI + LI +L RQ A ALG
Sbjct: 124 EDWFVRIAAAFA-----------LGEIGDERAVEPLIKALKDEDGWVRQSAADALG---- 168
Query: 1915 KLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
++G + + + + + R+ L
Sbjct: 169 EIGG---ERVRAAMEKLAETGTGFARKVAVNYLET 200
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 26/178 (14%)
Query: 1736 QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSS 1795
++ + ++ L DE+ VR AA A L + ++ L+ A++D ++ +RQS+
Sbjct: 49 ERAVEPLIKALKDEDAWVRRAAADA---LGQIGDERAVEPLIKALKD----EDGWVRQSA 101
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD 1855
LG + + A L+ +D A LG + L D
Sbjct: 102 AVALGQIGDERAVEPLIKALK--DEDWFVRIAA-----AFALGEIGDERAVEPLIKALKD 154
Query: 1856 VSLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGEL 1912
VRQ+A L EI + + + + R+VA L
Sbjct: 155 EDGWVRQSAA-----------DALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 40/193 (20%), Positives = 67/193 (34%), Gaps = 45/193 (23%)
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 1557
P+ V + L D V+ A AL ++G V L+ L D + + +
Sbjct: 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAA 70
Query: 1558 DILLQTTFVNTVDAPSLALL-----VPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612
A +L + V + + L++ ++ AA +G +
Sbjct: 71 -------------ADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERA---- 113
Query: 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSN 1672
+ + K L D VR AA A+G + V L+ ALK ++
Sbjct: 114 --------VEPLIKALKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGW 158
Query: 1673 VERSGAAQGLSEV 1685
V R AA L E+
Sbjct: 159 V-RQSAADALGEI 170
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 57/242 (23%)
Query: 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED 1469
+P + + + + D VR AA L G + + L+K L+D
Sbjct: 7 HHHHTDP---EKVEMYIKNLQDDSYYVRRAA-------AYALGKIGDERAVEPLIKALKD 56
Query: 1470 KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529
+ ++++ LG + + V L + L D V+ + AL Q+G
Sbjct: 57 EDAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD- 105
Query: 1530 IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALL-----VPIVHRG 1584
V L+ L D + + + A +L + V + +
Sbjct: 106 ------ERAVEPLIKALKDEDWFVRIAA-------------AFALGEIGDERAVEPLIKA 146
Query: 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644
L++ ++ AA +G + ++K+ R VA +
Sbjct: 147 LKDEDGWVRQSAADALGEIGGERV------------RAAMEKLAETGTGFARKVAVNYLE 194
Query: 1645 SL 1646
+
Sbjct: 195 TH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 48/231 (20%)
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA--PTLVSRLLDQLMKSDKYGERRGAA 1359
V+ + L S V+RA + L + DE L+ L D + RR AA
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYALG----KIGDERAVEPLIKALKD-----EDAWVRRAAA 66
Query: 1360 FGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419
L + L + L D + R+ A +A LG++ +
Sbjct: 67 DALG---------QIGDERAVEPLIKALKDEDGWVRQS-AAVA-------LGQIGDE--- 106
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSV 1479
+ + L+ A D+ VR AA A A L G + + L+K L+D+ +QS+
Sbjct: 107 RAVEPLIKALKDEDWFVRIAA---AFA----LGEIGDERAVEPLIKALKDEDGWVRQSAA 159
Query: 1480 QLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
LG + ++ + ++ + L+ S+I
Sbjct: 160 DALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSLI 200
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 8e-08
Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 33/214 (15%)
Query: 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV 1796
+ + + L D++ VR AA A L + ++ L+ A++D ++ +R+++
Sbjct: 14 EKVEMYIKNLQDDSYYVRRAAAYA---LGKIGDERAVEPLIKALKD----EDAWVRRAAA 66
Query: 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856
+ LG + + A L+ +D ++ LG+ + L D
Sbjct: 67 DALGQIGDERAVEPLIKALK--DEDGWVR-----QSAAVALGQIGDERAVEPLIKALKDE 119
Query: 1857 SLSVRQAALHVWKTIVANTPKTLKEI-MPVLMNTLISSLASSSSERRQVAGRALGELVRK 1915
VR AA L EI + LI +L RQ A ALGE
Sbjct: 120 DWFVRIAAA-----------FALGEIGDERAVEPLIKALKDEDGWVRQSAADALGE---- 164
Query: 1916 LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSE 1949
+G + + + + + R+ L
Sbjct: 165 IGG---ERVRAAMEKLAETGTGFARKVAVNYLET 195
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 32/182 (17%)
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
+ + K L D VR AA A+G + V L+ ALK ++ V R AA
Sbjct: 47 VEPLIKALKDEDAWVRRAAADALGQI-------GDERAVEPLIKALKDEDGWV-RQSAAV 98
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
ALG + E + +I+ + VR +LG + + ++ +
Sbjct: 99 -------ALGQIGDERAVEPLIKALKDEDWFVRIAAA-------FALG-EIGD--ERAVE 141
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
++ L DE+ VR +A A L E + E R+ +V L
Sbjct: 142 PLIKALKDEDGWVRQSAADA---LGEIGGERVRAAMEKLAET----GTGFARKVAVNYLE 194
Query: 1801 DL 1802
Sbjct: 195 TH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 42/232 (18%), Positives = 77/232 (33%), Gaps = 41/232 (17%)
Query: 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEG 1817
+ H H + + + ++D D++ +R+++ LG + + A + L++
Sbjct: 1 MRGSHHHHHHTDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGDERAV---EPLIKA 53
Query: 1818 GSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1877
D++ RA + LG+ + L D VRQ+A
Sbjct: 54 LKDEDAWVR----RAAADALGQIGDERAVEPLIKALKDEDGWVRQSAA-----------V 98
Query: 1878 TLKEIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPS 1936
L +I + LI +L R A ALGE+ G+ + L + LKD
Sbjct: 99 ALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEI----GD---ERAVEPLIKALKDED 151
Query: 1937 ASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988
RQ L E+ + + + R+ A
Sbjct: 152 GWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 192
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 41/189 (21%), Positives = 68/189 (35%), Gaps = 37/189 (19%)
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHT-KYS 1556
P+ V + L D V+ A AL ++G V L+ L D + + +
Sbjct: 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAA 65
Query: 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616
D L D ++ L+ + L++ ++ AA +G +
Sbjct: 66 ADAL-----GQIGDERAVEPLI----KALKDEDGWVRQSAAVALGQIGDERA-------- 108
Query: 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERS 1676
+ + K L D VR AA A+G + V L+ ALK ++ V R
Sbjct: 109 ----VEPLIKALKDEDWFVRIAAAFALGEI-------GDERAVEPLIKALKDEDGWV-RQ 156
Query: 1677 GAAQGLSEV 1685
AA L E+
Sbjct: 157 SAADALGEI 165
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 2e-07
Identities = 52/402 (12%), Positives = 129/402 (32%), Gaps = 53/402 (13%)
Query: 1633 PEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV--LAALG 1690
E+ + AI + I + + + + L+ + + ++ + + +
Sbjct: 253 SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIA 312
Query: 1691 TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAI-LDGLADE 1749
E+ ++ H + F + ++ + G
Sbjct: 313 VALGENHSRALLDQVEHWQ--------------------SFLALVNMIMFCTGIPGHYPV 352
Query: 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809
NE+ L + L + +L + R +L+ LL K
Sbjct: 353 NETTSSLTLTFWYTLQDD--------ILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFP 404
Query: 1810 SGKALLEGGSDDEGASTEAHGR------AIIEVLGRDKRNEVLA----ALYMVRSDVSLS 1859
S + SD++ + E+LG + + + L S
Sbjct: 405 SDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQ 464
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER 1919
+A L+ +++I +++P L+ LI ++ S+ + +G L L +
Sbjct: 465 HTEALLYGFQSIAETIDVNYSDVVPGLIG-LIPRISISNVQLADTVMFTIGALSEWLADH 523
Query: 1920 --VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS 1977
++ S++P++ L +P S + + + K L + ++ + L
Sbjct: 524 PVMINSVLPLVLHALGNPELSVSSVSTL---KKICRECKYDLPPYAANIVAVSQDVLMKQ 580
Query: 1978 I------LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALE 2013
I + + ++ G S L ++ + ++ + LE
Sbjct: 581 IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLE 622
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 9/156 (5%)
Query: 1567 NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKK 1626
N D L+ + +V R L +A + +AAQ++G V ++ + +G L ++
Sbjct: 73 NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132
Query: 1627 VLVDPIPEVRSVAARAIGSLIRG--MGEENFPDL--VSWLLDALKSDNSNVERSGAAQGL 1682
+ D VR A AI L+R G F L S L+ A++ + + +A L
Sbjct: 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL-KVKSAFLL 191
Query: 1683 SEVLA----ALGTVYFEHILPDIIRNCSHQRASVRD 1714
+L GT+ ++ ++ + + +
Sbjct: 192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHE 227
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-05
Identities = 65/464 (14%), Positives = 130/464 (28%), Gaps = 84/464 (18%)
Query: 1284 TGALAKHLAKDDPKVHAV-----VDKLLDVLNTPSEAVQRAVSSCLS------------- 1325
L L + AV + K++ +LN + + CL
Sbjct: 119 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 178
Query: 1326 -------PLMQ--------SMQDEAPTLVSRL------------------LDQLMKSDKY 1352
L+ + ++ L L +
Sbjct: 179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 238
Query: 1353 GERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC----E 1408
+ + L + G+ TL + L + A L +
Sbjct: 239 RLVQNCLWTLRNLSDA-ATKQEGMEGLLGTLVQ-LLGSDDINVVTCAAGILSNLTCNNYK 296
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA----ECAARAMMSQLSAQGVKL--VLPS 1462
+ + I+ L ++ D+ A +R ++++ V+L LP
Sbjct: 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 356
Query: 1463 LLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQT 1521
++K L W +++V L+ +A C +P+L ++L H Q
Sbjct: 357 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM 416
Query: 1522 ALQQVGSV--IKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579
Q V ++ EI L L + H + + ++ L V
Sbjct: 417 GGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVI-----------RGLNTIPLFVQ 464
Query: 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVA 1639
+ L ++ AA ++ + E + I G + ++L V + A
Sbjct: 465 L----LYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG-ATAPLTELLHSRNEGVATYA 518
Query: 1640 ARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLS 1683
A + + ++ L L +L A GL
Sbjct: 519 AAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMAWNETADLGLD 562
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 2e-05
Identities = 66/383 (17%), Positives = 143/383 (37%), Gaps = 32/383 (8%)
Query: 1293 KDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT-------LVSRLLDQ 1345
+ ++ + ++ LN+ Q + + ++ S + P +V RL++
Sbjct: 80 QFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL-SREHRPPIDVVIQAGVVPRLVEF 138
Query: 1346 LMKSDKYGERRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAF 1403
+ ++ + AA+ L + G + + L + + + A+ A
Sbjct: 139 MRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQ-AIWAL 197
Query: 1404 ECLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECA---ARAMMSQLSAQGVK 1457
+ + YV+Q M P+L + S++ +R A R Q V
Sbjct: 198 GNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVS 256
Query: 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAY-CAPQQLSQCLPKIVPKLTEVLTDTHPKVQ 1516
LP+L K + T + + ++ + +I +L E+L+ VQ
Sbjct: 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316
Query: 1517 SAGQTALQQVGSVIKNPEI------ASLVPTLLMGLTDPNDHT-KYSLDILLQTTFVNTV 1569
+ A+ + V N A ++P L + L+ P ++ K + + T NT
Sbjct: 317 TPALRAVGNI--VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374
Query: 1570 DAPSL--ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI--GLLLPEVK 1625
++ A L+P + + L +TKK+A + N S + D+I Y+ + +
Sbjct: 375 QIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLC 434
Query: 1626 KVLVDPIPEVRSVAARAIGSLIR 1648
+L + V A+ ++++
Sbjct: 435 DLLEIADNRIIEVTLDALENILK 457
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 46/266 (17%), Positives = 94/266 (35%), Gaps = 27/266 (10%)
Query: 1284 TGALAKHLAKDDPKV------HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT 1337
AL +A D ++ +L + N+ ++ R + LS L + + +
Sbjct: 194 IWALGN-VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 1338 LVSR----LLDQLMKSDKYGERRGAAFGLAGVVKGF--GISSLKKYGIAATLREGLADRN 1391
V L +L+ S A + ++ + G I ++ I L E L
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE-LLSHE 311
Query: 1392 SAKRREGALLAFECLC----EKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAM 1447
S + AL A + + + V+ L LLL + + + +EA +
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI--KKEACWTISNIT 369
Query: 1448 MS---QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL----PKI 1500
Q+ A ++P L+K LE ++TK+ + + + Q+
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429
Query: 1501 VPKLTEVLTDTHPKVQSAGQTALQQV 1526
+ L ++L ++ AL+ +
Sbjct: 430 IKPLCDLLEIADNRIIEVTLDALENI 455
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 64/180 (35%)
Query: 1621 LPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQ 1680
L + D VR + A+ MG+E F L+ ++L +++ + R AA
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSR----MGDEAFEPLL----ESLSNEDWRI-RGAAA- 63
Query: 1681 GLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLP 1740
++ ++ +
Sbjct: 64 ---WIIGNFQD--------------------------------------------ERAVE 76
Query: 1741 AILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800
++ L D++ VR A + L + + E R+ +V L
Sbjct: 77 PLIKLLEDDSGFVRSGAARS---LEQIGGERVRAAMEKLAET----GTGFARKVAVNYLE 129
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 29/141 (20%)
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAEC 1442
+AD N RR+ A L R+ + LL + S++ +R AA
Sbjct: 17 RGSHMADENKWVRRD-VSTA-------LSRMGDEAF----EPLLESLSNEDWRIRGAA-- 62
Query: 1443 AARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502
A + + + L+K LED + + + + L + ++
Sbjct: 63 -AWI----IGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRA 107
Query: 1503 KLTEVLTDTHPKVQSAGQTAL 1523
+ ++ + L
Sbjct: 108 AMEKLAETGTGFARKVAVNYL 128
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 25/130 (19%)
Query: 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481
L +D+ VR + A LS G + LL+ L ++ WR + ++ +
Sbjct: 14 LVPRGSHMADENKWVRRDV---STA----LSRMGDEAF-EPLLESLSNEDWRIRGAAAWI 65
Query: 1482 LGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPT 1541
+G + V L ++L D V+S +L+Q+G +
Sbjct: 66 IGNFQD----------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAA 108
Query: 1542 LLMGLTDPND 1551
+
Sbjct: 109 MEKLAETGTG 118
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-05
Identities = 76/588 (12%), Positives = 165/588 (28%), Gaps = 95/588 (16%)
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTK 1554
P I+ + +L + + G L+ + K + + L+ +
Sbjct: 60 TPYILKQTYRLLCGQASEDRRNGARILRSLMFQFKLVTDFKIEYKESSSIYLSSTGEQFN 119
Query: 1555 YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614
+ + + A + + + + K ++ V +
Sbjct: 120 VQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFKAGSGEAIKRHKVDERPIENVLD----- 174
Query: 1615 PYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR------GMGEENFPDLVSWLLDALKS 1668
++ L+ R A A ++ + L S + + L +
Sbjct: 175 -----FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVT 229
Query: 1669 DNSN----------VERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLT 1718
D N V R AA LS + +G I+ ++ V+ L
Sbjct: 230 DKFNDFVDDRTVAPV-RDAAAYLLSRIYPLIGP---NDIIEQLVGFLDSGDWQVQFSGLI 285
Query: 1719 LFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLP 1778
YL +F + ++ L+ +E ++ + L T SL L+L
Sbjct: 286 ALGYL-----KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL---LCHFPITDSLDLVLE 337
Query: 1779 AVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838
W + + + S ++ + ++
Sbjct: 338 KC--------W-------KNIESE-----------------ELISVSKTSNLSLLTKIYR 365
Query: 1839 RDK----RNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISS- 1893
+ E L ++ + VR + L +K + ++ L++
Sbjct: 366 ENPELSIPPERLKDIFPCFTSPVPEVRTSIL-----------NMVKNLSEESIDFLVAEV 414
Query: 1894 -LASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGL--KDPSASRRQGVCIGLSEV 1950
L E R++A + L + +L + I
Sbjct: 415 VLIEEKDEIREMAIKLLKKRRDLPKNLILHFMNVIGGSLYEPYSEDDFVSYEDLYFTKSG 474
Query: 1951 MASAGKSQLLSFMDELIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGMQAIDEIV-PTL 2008
+ GK ++L L I + + + + F +L++S D P
Sbjct: 475 INVVGKDEILKNRCLLFECIMKSGLPDLQSTIETTTSRTFISLYRSVQALVKDTPYTPAN 534
Query: 2009 LHALED--DQTSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSYVSL 2054
+ LE D+ D + LK+ + + I P + L Y +
Sbjct: 535 IEELEYYFDRCKDLKMAPLKEFKKKLSAPGIRSIHPMVDPLYSDYTRM 582
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 3e-04
Identities = 51/424 (12%), Positives = 109/424 (25%), Gaps = 84/424 (19%)
Query: 1631 PIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690
++ + S I+ + P ++ L S R A+ L ++
Sbjct: 37 QSKVLKGYTTDELVSQIKEYVDFT-PYILKQTYRLLCGQASED-RRNGARILRSLMFQFK 94
Query: 1691 TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750
V I + + S +S + + + + + + + A D
Sbjct: 95 LVTDFKI--EYKESSSIYLSSTGEQFNVQAPSIQEQKRMVRKIAKLEHVEANFLSDIDFK 152
Query: 1751 ESVRDA--ALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAG 1808
+A +E+ + D + + W R + + ++
Sbjct: 153 AGSGEAIKRHKVDERPIENVLDFFEQIS-----DNLLSYEWYKRHGAFLAFAAMFSEIDN 207
Query: 1809 TSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVW 1868
+ D ++ I E+L DK N+ + D
Sbjct: 208 GGDIQIRV----DSKLFSK-----IYEILVTDKFNDFV-------DD------------- 238
Query: 1869 KTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPIL 1928
VA PV R A L + +G II L
Sbjct: 239 -RTVA----------PV----------------RDAAAYLLSRIYPLIGPN---DIIEQL 268
Query: 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLA 1988
L + I L + D L + + L +++ +
Sbjct: 269 VGFLDSGDWQVQFSGLIALGYLKEFVED------KDGLCRKLVSLLSSPDEDIKLLSAEL 322
Query: 1989 FSTLFKSAGMQAIDEIVPTLLHAL--EDDQTSDTA--LDGLKQILSV-RTTAVLPHILPK 2043
+ ++D ++ + E+ + L L +I ++ P L
Sbjct: 323 LCHFPIT---DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKD 379
Query: 2044 LVHL 2047
+
Sbjct: 380 IFPC 383
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-05
Identities = 69/397 (17%), Positives = 143/397 (36%), Gaps = 40/397 (10%)
Query: 1285 GALAKHLAKDD----PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT--- 1337
GA+ H A+ + + +++++ + S Q + + L+ S + P
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLL-SKEPNPPIDEV 59
Query: 1338 -----LVSRLLDQLMKSDKYGERRGAAFGLAGVVKG--FGISSLKKYGIAATLREGLADR 1390
+V+R ++ L + + + +A+ L + G + + G E L
Sbjct: 60 ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIE-LLSS 118
Query: 1391 NSAKRREGALLAFECLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECA---- 1443
+E A+ A + + YV+ + PLL + + + A A
Sbjct: 119 EFEDVQEQAVWALGNIAGDSTMCRD-YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177
Query: 1444 ARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVP 1502
R V L L L + L ++ ++ + +
Sbjct: 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCR 237
Query: 1503 KLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-------ASLVPTLLMGLTDPNDHT-K 1554
+L E+L KV S AL+ VG+++ +I S + +LL L+ P + K
Sbjct: 238 RLVELLMHNDYKVVSP---ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294
Query: 1555 YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT-EPK 1611
+ + T N + A + P + L+ T+K+AA + N S + E
Sbjct: 295 EACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQI 354
Query: 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648
+ +G + P + +L ++ VA + +++R
Sbjct: 355 KYLVELGCIKP-LCDLLTVMDSKIVQVALNGLENILR 390
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 7e-05
Identities = 54/303 (17%), Positives = 100/303 (33%), Gaps = 29/303 (9%)
Query: 1483 GAMAYCAPQQLSQCLPK---IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL- 1538
GAM + Q + + I + E++ P+ Q + +++ S NP I +
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVI 60
Query: 1539 -----VPTL--LMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL--ALLVPIVHRGLRERS 1589
V + + S +L N++ + A VPI L
Sbjct: 61 STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120
Query: 1590 AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRG 1649
+ +++A +GN+ T +D + +L P ++ + A A+ +L RG
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180
Query: 1650 MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG-----------TVYFEHIL 1698
VS L+ L S + L++ AL V +
Sbjct: 181 KSPPPEFAKVSPCLNVL----SWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236
Query: 1699 PDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ-VLPAILDGLADENESVRDAA 1757
++ H V L + +Q Q L L ++L L+ ES++ A
Sbjct: 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296
Query: 1758 LGA 1760
Sbjct: 297 CWT 299
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 2e-04
Identities = 57/318 (17%), Positives = 93/318 (29%), Gaps = 35/318 (11%)
Query: 1234 GRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293
G + G++ L I EN D + V++ +L LA
Sbjct: 414 GSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVD--------VLLHGASLGIGLAA 465
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYG 1353
V + L +VL S A + + M + + ++
Sbjct: 466 MGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--EAIHDMFTYSQETQHGN 523
Query: 1354 ERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL 1413
RG A GLA + G ++ + + LA S R G L
Sbjct: 524 ITRGLAVGLALINYG------RQELADDLITKMLASDESLLRYGG------AFTIALAYA 571
Query: 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWR 1473
+ LL VA SD VR AA A + V ++ L +
Sbjct: 572 GTGNNSAVKRLLHVAVSDSNDDVRRAA-VIALGFVLLRDYTTVPRIVQLL---SKSHNAH 627
Query: 1474 TKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI--- 1530
+ + LG + L + D V+ A AL +
Sbjct: 628 VRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEK 681
Query: 1531 KNPEIASLVPTLLMGLTD 1548
NP++A + L +T+
Sbjct: 682 LNPQVADINKNFLSVITN 699
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 5e-04
Identities = 62/382 (16%), Positives = 127/382 (33%), Gaps = 38/382 (9%)
Query: 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 1679
+ L + A ++G + +G E + +L + +S + G+
Sbjct: 359 FIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGS--RASSRFIKGGSL 416
Query: 1680 QGLSEVLAALGTVYFEHILPDIIRNCS----HQRASVRDGYLTLFKYLPRSLGVQF-QNY 1734
GL + A G +++ I+ N + G +G+ +
Sbjct: 417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGAS-------LGIGLAAMGSA 469
Query: 1735 LQQVLPAILDGLADENESVRD-AALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQ 1793
+V A+ + L +++ + + AALG G ++ ++ + ++ + I +
Sbjct: 470 NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE---TQHGNITR 526
Query: 1794 SSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAA---LY 1850
L L+ L+ + + +G A L A L+
Sbjct: 527 GLAVGLA-LINYGRQELADDLITKMLASDESLLR-YGGAFTIALAYAGTGNNSAVKRLLH 584
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALG 1910
+ SD + VR+AA+ ++ T+ I+ +L S ++ R ALG
Sbjct: 585 VAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK-------SHNAHVRCGTAFALG 637
Query: 1911 ELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMA---SAGKSQLLSFMDELI 1967
+ L S I +L KDP RQ I LS ++ Q+ +
Sbjct: 638 IA---CAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694
Query: 1968 PTIRTALCDSI--LEVRESAGL 1987
I + + + G+
Sbjct: 695 SVITNKHQEGLAKFGACVAQGI 716
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 65/462 (14%), Positives = 138/462 (29%), Gaps = 82/462 (17%)
Query: 1284 TGALAKHLAKDDPK------VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT 1337
L +L + + K++ +LN + + CL L Q+
Sbjct: 255 ITTLH-NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 313
Query: 1338 LVS----RLLDQLMKSDKYGERRGAAFGL----------------AGVVK---------- 1367
+++ + L +M++ Y + + AG ++
Sbjct: 314 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 373
Query: 1368 -------GFGISSLKKYGIAATLREG-------LADRNSAKRREGALLAFECLC----EK 1409
+ + +L EG L + A L +
Sbjct: 374 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433
Query: 1410 LGRLFEPYVIQMLPLLLVAFSDQVVAVREAA----ECAARAMMSQLSAQGVKL--VLPSL 1463
+ + I+ L ++ D+ A +R ++++ V+L LP +
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493
Query: 1464 LKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQ--SAGQ 1520
+K L W +++V L+ +A C +P+L ++L H Q ++
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553
Query: 1521 TALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPI 1580
QQ ++ EI L L + H + + ++ L V +
Sbjct: 554 GTQQQFVEGVRMEEIVEACTGALHILA-RDIHNRIVI-----------RGLNTIPLFVQL 601
Query: 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAA 1640
L ++ AA ++ + E + I G + ++L V + AA
Sbjct: 602 ----LYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG-ATAPLTELLHSRNEGVATYAA 655
Query: 1641 RAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
+ + ++ L L +L GL
Sbjct: 656 AVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGL 697
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 9e-04
Identities = 63/386 (16%), Positives = 139/386 (36%), Gaps = 37/386 (9%)
Query: 1294 DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPT------LVSRLLDQLM 1347
+ V+ V+ ++ +N+ + Q + L+ + L+ + + L
Sbjct: 51 NQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG 110
Query: 1348 KSDKYGERRGAAFGLAGVVKG---FGISSLKKYGIAATLREGLADRNSAKRREGALLAFE 1404
K+D + +A+ L + G + + I A + L A E A+ A
Sbjct: 111 KTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS--LLASPHAHISEQAVWALG 168
Query: 1405 CLCEKLGRLFEPYVIQ---MLPLLLVAFSDQVVAVREAAECAARAMMSQLS--------A 1453
+ G F VI+ + PLL + + + +S L
Sbjct: 169 NIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 227
Query: 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLTDTH 1512
V+ +LP+L++ L S + + +++ + +VP+L ++L T
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287
Query: 1513 PKVQSAGQTALQQVGSVIKNPEI-------ASLVPTLLMGLTDPNDHT-KYSLDILLQTT 1564
+ + AL+ +G+++ + A + LT+P + K + + T
Sbjct: 288 LPIVTP---ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344
Query: 1565 FVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP 1622
+ LVP + L + +T+K+AA + N S T + + ++
Sbjct: 345 AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE 404
Query: 1623 EVKKVLVDPIPEVRSVAARAIGSLIR 1648
+ +L ++ V AI ++ +
Sbjct: 405 PLMNLLSAKDTKIIQVILDAISNIFQ 430
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2058 | |||
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 100.0 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 100.0 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.9 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.88 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.88 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.87 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 99.87 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.85 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.83 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.8 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.79 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.79 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.77 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.77 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 99.77 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.75 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.75 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.75 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.7 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.7 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.7 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 99.68 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.68 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.67 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.66 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.65 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.64 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.64 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.63 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.63 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 99.63 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 99.62 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 99.6 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 99.59 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 99.56 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.56 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.56 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.54 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.53 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.51 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.48 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.47 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.47 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.45 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.38 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.37 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.36 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.32 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.31 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 99.29 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 99.28 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 99.21 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 99.15 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.13 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.13 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.05 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.03 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.02 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.02 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.01 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.0 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.0 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.95 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 98.95 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.93 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 98.89 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.88 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 98.87 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.84 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 98.83 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 98.79 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.69 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.67 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.56 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.55 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.52 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.52 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.48 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 98.42 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 98.4 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.4 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 98.4 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 98.39 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.36 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 98.29 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 98.22 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.0 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.95 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.9 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.84 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.83 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.75 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 97.74 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.74 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.54 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 97.5 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 97.38 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 97.26 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 96.84 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 96.71 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 96.53 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 95.71 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 94.73 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 94.38 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 93.34 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 92.68 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 92.6 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 91.64 | |
| 4atg_A | 196 | TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton | 91.51 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 90.27 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 88.66 | |
| 1vsy_4 | 799 | Proteasome activator BLM10; 20S proteasome BLM10, | 80.83 | |
| 2b6c_A | 220 | Hypothetical protein EF3068; structural genomis, D | 80.2 |
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=472.63 Aligned_cols=888 Identities=17% Similarity=0.180 Sum_probs=631.8
Q ss_pred HHhHHHHhcCCCHHHHHHHHHHHHHHHHhC-----CCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhh
Q 000143 1132 YSGLFKALSHSNYNVRLAAAEALATALDEY-----PDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2058)
Q Consensus 1132 ~~~ll~~l~~~~~~vR~aaa~aLa~~~~~~-----~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~ 1206 (2058)
+..+++.+.++|..+|..|...|....... ++....++..+++.+ . +.+|.+|.+++.+++.++.
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L----~------d~~~~vR~~A~~~L~~l~~ 77 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLL----E------DKNGEVQNLAVKCLGPLVS 77 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHT----T------CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHh----c------CCCHHHHHHHHHHHHHHHH
Confidence 377888999999999999988888766432 123445555555542 2 4679999999999999988
Q ss_pred hhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCcc---------chhhHHHHHHHHhcccCCChhHHHHHH
Q 000143 1207 VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD---------NVSLLFPIFENYLNKKASDEEKYDLVR 1277 (2058)
Q Consensus 1207 ~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~---------~~~~Ll~~l~~~L~~~~~~~e~~~~vR 1277 (2058)
..++...+.+++.++ .++.|+++.||..+..+...++...+.. +++.++|.+...+.+ .. + ..+|
T Consensus 78 ~~~~~~~~~i~~~Ll-~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~--~--~~~~ 151 (1230)
T 1u6g_C 78 KVKEYQVETIVDTLC-TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QE--D--VSVQ 151 (1230)
T ss_dssp TSCHHHHHHHHHHHH-HHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CS--C--HHHH
T ss_pred hCCHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CC--c--hHHH
Confidence 776655667777775 5788999999999999888888776654 588999999888864 11 1 2689
Q ss_pred HHHHHHHHHHHhHhcc-CCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccc-hHHHHHHHHHHHhcCCCHHHH
Q 000143 1278 EGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGER 1355 (2058)
Q Consensus 1278 ~~av~~Lg~La~~l~~-~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~-~~~~v~~Ll~~L~~~~~~~vR 1355 (2058)
..++.+++.+++..++ ..|+++.+++.++..|.+++..||..+..|++.++...++. +..+++.+++.+...+++..|
T Consensus 152 ~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r 231 (1230)
T 1u6g_C 152 LEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTT 231 (1230)
T ss_dssp HHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSC
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHH
Confidence 9999999999986654 34789999999999999999999999999999998776543 355688888888776556788
Q ss_pred HHHHHHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCC---
Q 000143 1356 RGAAFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSD--- 1431 (2058)
Q Consensus 1356 ~~Aa~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D--- 1431 (2058)
..++.+++.++...|....+ -..+++.+.+.+.++ ++.+|+.++.+++.+++.++..+.||+..++|.++..+.+
T Consensus 232 ~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~ 310 (1230)
T 1u6g_C 232 RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 310 (1230)
T ss_dssp TTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCC
Confidence 99999999999987753221 127999999999876 7889999999999999999999999999999999876631
Q ss_pred ----------------------------------CCHHHHHHHHHHHHHHHHhhhh---hhHHhHHHHHHHhccCCChHH
Q 000143 1432 ----------------------------------QVVAVREAAECAARAMMSQLSA---QGVKLVLPSLLKGLEDKAWRT 1474 (2058)
Q Consensus 1432 ----------------------------------~~~~VR~aA~~al~~l~~~l~~---~~v~~llp~Ll~~L~~~~~~~ 1474 (2058)
..+.||.+|..+++.++...+. ..+..++|.+...+.+.+..+
T Consensus 311 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~V 390 (1230)
T 1u6g_C 311 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 390 (1230)
T ss_dssp ----------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHH
T ss_pred CCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHH
Confidence 1246899999999999876553 234677888989999999999
Q ss_pred HHHHHHHHHHHHhhC-------------------hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc---
Q 000143 1475 KQSSVQLLGAMAYCA-------------------PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--- 1532 (2058)
Q Consensus 1475 R~~a~~~Lg~la~~~-------------------p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--- 1532 (2058)
|..++.+++.+.... ...+..+++.++|.+.+.++|+++.+|.+++.+++.++...++
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~ 470 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALT 470 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTG
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhH
Confidence 999999999887642 2356778899999999999999999999999999999987653
Q ss_pred hhHHhHHHHHHhccCCCCh--hHH-HHHHHHHhc--cccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1533 PEIASLVPTLLMGLTDPND--HTK-YSLDILLQT--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~--~vr-~al~~L~~~--~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
+++..++|.++..+.|+.. .++ +++..+... .+....-.+.+..++|.+...++|+++.++..+..+++.+++.+
T Consensus 471 ~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~ 550 (1230)
T 1u6g_C 471 QHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVI 550 (1230)
T ss_dssp GGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHh
Confidence 6789999999999999875 555 455555431 11122223567789999999999999999999999999998776
Q ss_pred CC-----CCchhhhHhhhhHHHHHhh--CCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhh
Q 000143 1608 TE-----PKDMIPYIGLLLPEVKKVL--VDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1608 ~~-----~~~l~pyl~~ll~~L~~~l--~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
+. +..+.||++.++|.+...+ .|.++++|..++.++|.++...|+. +++.+++.+.+.+.++. .|..
T Consensus 551 ~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~---~r~~ 627 (1230)
T 1u6g_C 551 RPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI---TRLT 627 (1230)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS---HHHH
T ss_pred cCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch---hHHH
Confidence 54 3578899999999999999 7889999999999999999999876 45677777777765322 3444
Q ss_pred HHHHHHHHHHHhc----hhHHHHhhHHHHHhhccCChhHHHHHHHHHHH-------------------------------
Q 000143 1678 AAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKY------------------------------- 1722 (2058)
Q Consensus 1678 aa~~L~~i~~~~g----~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~------------------------------- 1722 (2058)
+..+++.++...+ ..++..++|.+...+.+.++.+|..++.+++.
T Consensus 628 ~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~ 707 (1230)
T 1u6g_C 628 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMH 707 (1230)
T ss_dssp HHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHH
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHH
Confidence 4444444433211 11334444444444444444455554444444
Q ss_pred -----------hHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc-----cchhchHHhHhhhcCC
Q 000143 1723 -----------LPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT-----TSLPLLLPAVEDGIFN 1786 (2058)
Q Consensus 1723 -----------la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~-----~~l~~llp~L~~~l~d 1786 (2058)
+....+..+.++.+.++|.++..+.++. ++..+..++..++..... ..++.+++.+...+..
T Consensus 708 ~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~ 785 (1230)
T 1u6g_C 708 VSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPL--LQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYS 785 (1230)
T ss_dssp HHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTT--CCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTT
T ss_pred HHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcc--cchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccC
Confidence 4444444444455555666666555432 122233333333333222 1234455555443321
Q ss_pred -----CCHHHHHHHHHHHHHHHHHhhCCcc---cccccCCCCCCCcchHHHHH-HHHHHhCh----hhHHHHHHHHHHhh
Q 000143 1787 -----DNWRIRQSSVELLGDLLFKVAGTSG---KALLEGGSDDEGASTEAHGR-AIIEVLGR----DKRNEVLAALYMVR 1853 (2058)
Q Consensus 1787 -----~~~~vR~sav~ll~~Ll~~~~g~~~---k~~~~~~~e~~~~~~e~~~~-~l~~~Lg~----~~~~~vL~~L~~~~ 1853 (2058)
.++.++..+...++.++.......+ +.+......+.......... .....+|. ....++...+...+
T Consensus 786 ~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l 865 (1230)
T 1u6g_C 786 QSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAF 865 (1230)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGG
T ss_pred CCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHh
Confidence 3566778888888887643221111 11111111000000000000 00111111 01124556666677
Q ss_pred cCCCHHHHHHHHHHHHHHHhhC----------------------------------hhhHHHhHHHHHHHHHHHhcCCCH
Q 000143 1854 SDVSLSVRQAALHVWKTIVANT----------------------------------PKTLKEIMPVLMNTLISSLASSSS 1899 (2058)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~lv~~~----------------------------------~~~l~~~l~~L~~~l~~~L~~~~~ 1899 (2058)
.|.+..||.+|...++.++... ...+.++.+.+++.+.+.+.+.+.
T Consensus 866 ~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~ 945 (1230)
T 1u6g_C 866 SSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEE 945 (1230)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSST
T ss_pred CCCCHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcch
Confidence 8888888888877777654321 123445556777777777777788
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCH
Q 000143 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSIL 1979 (2058)
Q Consensus 1900 ~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~ 1979 (2058)
.+|..+++|+|.++.... ..++|.+.+.+.++++.+|..++.+++.++...+.. ..+|++.+++.+...+.|+++
T Consensus 946 ~~r~~~a~~lg~l~~~~~----~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~-~~~~l~~~~~~ll~~l~d~~~ 1020 (1230)
T 1u6g_C 946 GTRNVVAECLGKLTLIDP----ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQP-IDPLLKNCIGDFLKTLEDPDL 1020 (1230)
T ss_dssp THHHHHHHHHHHHHHSSG----GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCT-HHHHHHHHSTTTHHHHSSSST
T ss_pred hhHHHHHHHHhhhhccCh----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchh-hHHHHHHHHHHHHHhcCCCcH
Confidence 899999999999987632 578899999999999999998888888877766543 467888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCh---hhHHHHHHHHHHhcCC--C------------------cchHHHHHHHHHHHhhcCCc-
Q 000143 1980 EVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALED--D------------------QTSDTALDGLKQILSVRTTA- 2035 (2058)
Q Consensus 1980 ~VR~~Aa~a~~~l~~~~g~---~~~~~ilp~Ll~~L~~--~------------------~~~~~al~aL~~i~~~~~~~- 2035 (2058)
+||++|+++++.+.++.+. +++++++|.|++.+.- + +.|++|++++..++.++.+.
T Consensus 1021 ~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i 1100 (1230)
T 1u6g_C 1021 NVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRL 1100 (1230)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999988764 4778999999988742 1 35899999999999887443
Q ss_pred cchhhhhhhcc
Q 000143 2036 VLPHILPKLVH 2046 (2058)
Q Consensus 2036 ~lp~lip~L~~ 2046 (2058)
-+..+++.++.
T Consensus 1101 ~~~~~~~~~~~ 1111 (1230)
T 1u6g_C 1101 DIFEFLNHVED 1111 (1230)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHc
Confidence 34445555554
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=452.96 Aligned_cols=955 Identities=15% Similarity=0.140 Sum_probs=661.2
Q ss_pred hHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCC--CchhhhhhHhhhhcCCCchHHHHHHHHHHhhcCCCCC----
Q 000143 1056 PNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSL--PENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFG---- 1129 (2058)
Q Consensus 1056 ~~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~--~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~~~~~~---- 1129 (2058)
+.++..+|+++.+||+++|.+|++.|.+......... .....+...++-...|+++.+|..|............
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~ 84 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV 84 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3578999999999999999999999987653321111 1123466677777778999999887654333111111
Q ss_pred CCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCc----------hHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHH
Q 000143 1130 TDY-SGLFKALSHSNYNVRLAAAEALATALDEYPDS----------IQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2058)
Q Consensus 1130 ~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~----------~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~ 1198 (2058)
+.+ +.+++.+.+++..+|.+++.+++.++...+.. ++.+++.|++.+ .+ ++.|.+|.+++
T Consensus 85 ~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l----~~-----~~~~~~~~~al 155 (1230)
T 1u6g_C 85 ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAI----AK-----QEDVSVQLEAL 155 (1230)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHH----SC-----CSCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH----cC-----CCchHHHHHHH
Confidence 234 67778888999999999999999998776542 556666666554 21 24688999999
Q ss_pred HHHHHhhhhhCCC---ChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHH
Q 000143 1199 LALHSAADVLRTK---DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDL 1275 (2058)
Q Consensus 1199 ~al~~l~~~~~~~---~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~ 1275 (2058)
.++..++..++.. ..+.++..++ ..+.|+++.||..++.+...++...+...++.+++.+...+.... + ..
T Consensus 156 ~~l~~~~~~~~~~l~~~~~~ll~~l~-~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~-~----~~ 229 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVNFHPSILTCLL-PQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKND-S----MS 229 (1230)
T ss_dssp HHHHHHHHHTCSSCTTTHHHHHHHHG-GGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTC-S----SC
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCC-c----hh
Confidence 9999998766543 3456666664 678899999999999998888876666667778888877776521 1 14
Q ss_pred HHHHHHHHHHHHHhHhccC-CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhc------
Q 000143 1276 VREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMK------ 1348 (2058)
Q Consensus 1276 vR~~av~~Lg~La~~l~~~-~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~------ 1348 (2058)
+|..++.+++.++...++. .|++..+++.++..+.++++.||..+..++..++...++.+..+++.++..+..
T Consensus 230 ~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~ 309 (1230)
T 1u6g_C 230 TTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDP 309 (1230)
T ss_dssp SCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCC
Confidence 6788999999999876542 478899999999999999999999999999988887766655555544443321
Q ss_pred ----------------------------------CCCHHHHHHHHHHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCH
Q 000143 1349 ----------------------------------SDKYGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSA 1393 (2058)
Q Consensus 1349 ----------------------------------~~~~~vR~~Aa~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~ 1393 (2058)
+..|.+|+.|+.++..++...|....+ ...++|.+...+.+. ++
T Consensus 310 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~-~~ 388 (1230)
T 1u6g_C 310 NYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKER-EE 388 (1230)
T ss_dssp -----------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCS-SS
T ss_pred CCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCC-ch
Confidence 012667999999999999865531111 125677777777665 78
Q ss_pred HHHHHHHHHHHHHHHHhcc-------------------cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-
Q 000143 1394 KRREGALLAFECLCEKLGR-------------------LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA- 1453 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~lg~-------------------~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~- 1453 (2058)
.+|..++.++..+....+. .+.+++..++|.+...+.|+++.+|.+++.+++.++...+.
T Consensus 389 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~ 468 (1230)
T 1u6g_C 389 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGA 468 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhh
Confidence 9999999999988876542 34567778888888889999999999999999999887543
Q ss_pred --hhHHhHHHHHHHhccCCCh--HHHHHHHHHHHHHHhhC-hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1454 --QGVKLVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1454 --~~v~~llp~Ll~~L~~~~~--~~R~~a~~~Lg~la~~~-p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
..++.++|.+++.+.+.++ .+|..++..++.+.... ++.+.++++.++|.+...++|.++.||..|+.+++.+++
T Consensus 469 l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~ 548 (1230)
T 1u6g_C 469 LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVK 548 (1230)
T ss_dssp TGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH
Confidence 2358899999999998876 88999999999988644 555889999999999999999999999999999999998
Q ss_pred hcCc----------hhHHhHHHHHHhcc--CCCChhHH-HHHHHHHhc-cccccCChhhHhhHHHHHHHhhcCCCHHHHH
Q 000143 1529 VIKN----------PEIASLVPTLLMGL--TDPNDHTK-YSLDILLQT-TFVNTVDAPSLALLVPIVHRGLRERSAETKK 1594 (2058)
Q Consensus 1529 ~~~~----------~~i~~lvp~Ll~~l--~d~~~~vr-~al~~L~~~-~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~ 1594 (2058)
.++. |+++.++|.++..+ .|++..+| .++.+++.. ......-.+.+..++|.+...+.+.. +|.
T Consensus 549 ~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~--~r~ 626 (1230)
T 1u6g_C 549 VIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI--TRL 626 (1230)
T ss_dssp HHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSS--HHH
T ss_pred HhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccch--hHH
Confidence 7765 68899999999998 67777787 455665541 22222223556778888888777653 677
Q ss_pred HHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCc-cchHHHHHhhcc--cCCC
Q 000143 1595 KAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALK--SDNS 1671 (2058)
Q Consensus 1595 ~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~-~~llp~L~~~L~--~d~~ 1671 (2058)
.++.+++.++... .+.++.+|++.++|.+...+.++++.+|..++.+++.++...+.... +.+.|.+...+. ++.+
T Consensus 627 ~~~~al~~i~~~~-~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D 705 (1230)
T 1u6g_C 627 TTVKALTLIAGSP-LKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESD 705 (1230)
T ss_dssp HHHHHHHHHTTCS-SCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTC
T ss_pred HHHHHHHHHHhCc-cccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcch
Confidence 8888898887643 23467899999999999999999999999999999999998876432 233333322211 2455
Q ss_pred hHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhccCC--hhHHHHHHHHHHHhHHHhc--hhHHHhHHH-------
Q 000143 1672 NVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQR--ASVRDGYLTLFKYLPRSLG--VQFQNYLQQ------- 1737 (2058)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~~~~--~~vR~~al~~l~~la~~~g--~~f~pyl~~------- 1737 (2058)
..++..+..+++.++...+.. +.+.++|.++..+.++. .......+.++..+..... ..|.++++.
T Consensus 706 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~ 785 (1230)
T 1u6g_C 706 MHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYS 785 (1230)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTT
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccC
Confidence 656777778888777655433 34566666666555432 1122222222222221110 012222211
Q ss_pred -------------------------------HHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhc
Q 000143 1738 -------------------------------VLPAILDGLAD--ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI 1784 (2058)
Q Consensus 1738 -------------------------------ilp~Ll~~L~d--~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l 1784 (2058)
+++.+...+.+ ..+.++..++.+++.+.....-...+.+.+.+.+.+
T Consensus 786 ~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l~~~~~~~l 865 (1230)
T 1u6g_C 786 QSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAF 865 (1230)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGG
T ss_pred CCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcccccHHHHHHHHh
Confidence 12222222222 234455555555555433211111234567777888
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHH---hChh----hHHHHHHHHHHhhcCCC
Q 000143 1785 FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEV---LGRD----KRNEVLAALYMVRSDVS 1857 (2058)
Q Consensus 1785 ~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~---Lg~~----~~~~vL~~L~~~~~D~~ 1857 (2058)
.+.+..||.++..++|.+.........+.++.....+.. .......++.+. .+.+ +...+++.|+....+.+
T Consensus 866 ~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~-~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~ 944 (1230)
T 1u6g_C 866 SSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPK-RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAE 944 (1230)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGG-GHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSS
T ss_pred CCCCHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccch-hhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcc
Confidence 888999999999999887532100000111110000000 011111222222 2222 23456666666666667
Q ss_pred HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcch---hhchHHHHhhhcCC
Q 000143 1858 LSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKD 1934 (2058)
Q Consensus 1858 ~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~---l~~llp~L~~~l~d 1934 (2058)
..+|..+..+++.+....+. . ++|.+.+.+.+++...|..++.+++.++...+..+ ++.++|.+...++|
T Consensus 945 ~~~r~~~a~~lg~l~~~~~~---~----l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d 1017 (1230)
T 1u6g_C 945 EGTRNVVAECLGKLTLIDPE---T----LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1017 (1230)
T ss_dssp TTHHHHHHHHHHHHHHSSGG---G----THHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSS
T ss_pred hhhHHHHHHHHhhhhccChH---H----HHHHHHHHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCC
Confidence 78999999999998876552 3 34445556789999999999988888776665443 55666777778899
Q ss_pred CChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHh
Q 000143 1935 PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC------------------DSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1935 ~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~------------------D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
+++++|+.++.+++.++... ++.+.++++.++|.|.+.+. |..-++|++|..|+..+.++.
T Consensus 1018 ~~~~vr~~a~~~l~~~~~~~-~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~ 1096 (1230)
T 1u6g_C 1018 PDLNVRRVALVTFNSAAHNK-PSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSC 1096 (1230)
T ss_dssp SSTHHHHHHHHHHHHHHHHC-GGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSS
T ss_pred CcHHHHHHHHHHHHHHHhcC-hHhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888654 56778899999999988663 444599999999999999875
Q ss_pred Ch-hhHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhcCCccch
Q 000143 1997 GM-QAIDEIVPTLLHALEDDQ-TSDTALDGLKQILSVRTTAVLP 2038 (2058)
Q Consensus 1997 g~-~~~~~ilp~Ll~~L~~~~-~~~~al~aL~~i~~~~~~~~lp 2038 (2058)
.. -.+.++++.++..|+|++ .+.-++..|..++..+|..+++
T Consensus 1097 ~~~i~~~~~~~~~~~gl~d~~di~~~~~~~l~~l~~~~~~~~~~ 1140 (1230)
T 1u6g_C 1097 LDRLDIFEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPSAVLQ 1140 (1230)
T ss_dssp CSSSCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCHHHHT
T ss_pred HHhCCHHHHHHHHHcccCchHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 43 357899999999999853 4567888888888887765554
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-37 Score=429.34 Aligned_cols=743 Identities=13% Similarity=0.153 Sum_probs=567.2
Q ss_pred HhHHHHh-cCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhh-----
Q 000143 1133 SGLFKAL-SHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD----- 1206 (2058)
Q Consensus 1133 ~~ll~~l-~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~----- 1206 (2058)
..++... .++|..+|+.|.+.|..+.+.. .+..+..|...+.. .+.+..+|..++..|++...
T Consensus 7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~---~~~~~~~l~~il~~--------~~~~~~vR~~A~~~lk~~i~~~w~~ 75 (861)
T 2bpt_A 7 AQLLENSILSPDQNIRLTSETQLKKLSNDN---FLQFAGLSSQVLID--------ENTKLEGRILAALTLKNELVSKDSV 75 (861)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHC---HHHHHHHHHHHHTC--------TTSCHHHHHHHHHHHHTTTCCSSHH
T ss_pred HHHHHHcccCcCHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHhC--------CCCChHHHHHHHHHHHhhccCcChH
Confidence 4566666 7889999999999998866542 12233334333211 02346789999998888642
Q ss_pred ----------h-hCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc-cchhhHHHHHHHHhcccCCChhHHH
Q 000143 1207 ----------V-LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYD 1274 (2058)
Q Consensus 1207 ----------~-~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~e~~~ 1274 (2058)
. ++.+....+...++ ..+.++++.+|..+..+...+.....+ ..|++++|.+...+.+. + ..
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~-~----~~ 149 (861)
T 2bpt_A 76 KTQQFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-Q----PE 149 (861)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-S----CH
T ss_pred HHHHHHHhHhhhCCHHHHHHHHHHHH-HHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcC-C----CH
Confidence 1 33333445556665 568888999999998888777766544 47999999998887541 1 12
Q ss_pred HHHHHHHHHHHHHHhHhccC----CcchHHHHHHHHhhhCCC--CHHHHHHHHHhhHhhHhhcccch-----HH-HHHHH
Q 000143 1275 LVREGVVIFTGALAKHLAKD----DPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PT-LVSRL 1342 (2058)
Q Consensus 1275 ~vR~~av~~Lg~La~~l~~~----~p~i~~iv~~Ll~~L~~~--~~~V~~av~~~L~~l~~~~~~~~-----~~-~v~~L 1342 (2058)
.+|+.++.+++.+++.+... .++...+++.+...+.++ +..||.++.+|+..++...+... .. +++.+
T Consensus 150 ~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l 229 (861)
T 2bpt_A 150 NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVV 229 (861)
T ss_dssp HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHH
Confidence 68999999999999876543 357888999999999988 89999999999988765443221 12 34444
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhCccccc-hh-chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc---------
Q 000143 1343 LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKLG--------- 1411 (2058)
Q Consensus 1343 l~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~-~~-~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg--------- 1411 (2058)
. .+..++++.+|..+..++..++...+....+ .. .+++.+...+.+. +..+|..++.++..+++...
T Consensus 230 ~-~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 307 (861)
T 2bpt_A 230 C-EATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQF 307 (861)
T ss_dssp H-HHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred H-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 3 4456678999999999999999877533221 11 5666666666665 78999999999999887631
Q ss_pred --------ccchhhHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHH
Q 000143 1412 --------RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2058)
Q Consensus 1412 --------~~~~p~l~~llp~Ll~~l~D-------~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~ 1476 (2058)
..+.+++..++|.++..+.+ ++..+|.++..+++.++..++...+..++|.+.+.+.+.+|+.|.
T Consensus 308 ~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~ 387 (861)
T 2bpt_A 308 PQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNRE 387 (861)
T ss_dssp TTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHH
Confidence 23467788899999988874 346899999999999999988777788999999999999999999
Q ss_pred HHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHH
Q 000143 1477 SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555 (2058)
Q Consensus 1477 ~a~~~Lg~la~~~p-~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~ 1555 (2058)
+++.++|.++.++. +.+.++++.++|.+...+.|+++.||.++++++++++..++... .
T Consensus 388 ~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~-------------~------- 447 (861)
T 2bpt_A 388 AAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI-------------D------- 447 (861)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS-------------C-------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc-------------C-------
Confidence 99999999998874 77889999999999999999999999999999999998654210 0
Q ss_pred HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC--CCchhhhHhhhhHHHHHhhC--CC
Q 000143 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLV--DP 1631 (2058)
Q Consensus 1556 al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~--~~~l~pyl~~ll~~L~~~l~--d~ 1631 (2058)
..+.+..++|.+...++|. +.+|..++.++++++..+++ +..+.||++.+++.+...+. |.
T Consensus 448 --------------~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~ 512 (861)
T 2bpt_A 448 --------------PQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDN 512 (861)
T ss_dssp --------------TTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCC
T ss_pred --------------CHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCc
Confidence 0112334555566666665 78888999999999886542 46688999999999999998 44
Q ss_pred CHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccC--------------CChHHHhhHHHHHHHHHHHhchh--
Q 000143 1632 IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD--------------NSNVERSGAAQGLSEVLAALGTV-- 1692 (2058)
Q Consensus 1632 ~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d--------------~~~~~R~~aa~~L~~i~~~~g~~-- 1692 (2058)
++.+|..++++++.++...|++ +++.++|.+++.+... ....+|..++.+++.++..+|..
T Consensus 513 ~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 592 (861)
T 2bpt_A 513 EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVE 592 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred chHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 5899999999999999998876 5667888887777531 13346778899999999999874
Q ss_pred -HHHHhhHHHHHhhccCCh-hHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1693 -YFEHILPDIIRNCSHQRA-SVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1693 -~l~~llp~Ll~~l~~~~~-~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
+++.+++.++..+++.++ .+|+.++.+++.++...|.+|.||++.++|.++..+.++++.+|..++.++..++...+.
T Consensus 593 ~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~ 672 (861)
T 2bpt_A 593 PVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE 672 (861)
T ss_dssp GGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch
Confidence 678899999998888877 899999999999999999999999999999999999888888998888888877766543
Q ss_pred cchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHH
Q 000143 1771 TSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850 (2058)
Q Consensus 1771 ~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~ 1850 (2058)
. +.|.+. .+++.++
T Consensus 673 ~----~~~~~~--------------------------------------------------------------~l~~~l~ 686 (861)
T 2bpt_A 673 D----FRRYSD--------------------------------------------------------------AMMNVLA 686 (861)
T ss_dssp G----GHHHHH--------------------------------------------------------------HHHHHHH
T ss_pred h----ccchHH--------------------------------------------------------------HHHHHHH
Confidence 2 111110 1111111
Q ss_pred HhhcC--CCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHHHhC
Q 000143 1851 MVRSD--VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVAGRALGELVRKLG 1917 (2058)
Q Consensus 1851 ~~~~D--~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~-----------~~~R~~A~~~Lg~L~~~lg 1917 (2058)
..+.+ .+..+|..+..+++.++...+..+.+|++.+++.+...+.... ..+|..+.++++.++..+|
T Consensus 687 ~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~ 766 (861)
T 2bpt_A 687 QMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766 (861)
T ss_dssp HHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11112 1246788888899998888888899999999999988877432 4689999999999999988
Q ss_pred c--c----hhhchHHHHhhhcCCC----ChhHHHHHHHHHHHHHHhhChhhhHhHHh-hHHHHHHHHhc---CCCHHHHH
Q 000143 1918 E--R----VLPSIIPILSRGLKDP----SASRRQGVCIGLSEVMASAGKSQLLSFMD-ELIPTIRTALC---DSILEVRE 1983 (2058)
Q Consensus 1918 ~--~----~l~~llp~L~~~l~d~----~~~vR~~a~~aL~eii~~~~~~~l~~~~~-~ll~~L~~~L~---D~d~~VR~ 1983 (2058)
+ . +++.+++.+...+.|. +..+|..++.+++.++..+++..+.+|.+ .+++.+.+.+. +.+..+++
T Consensus 767 ~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~ 846 (861)
T 2bpt_A 767 DKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKD 846 (861)
T ss_dssp TCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHH
Confidence 3 2 3466777777777663 78899999999999999884446788888 89999888775 57789999
Q ss_pred HHHHHHHHHHHH
Q 000143 1984 SAGLAFSTLFKS 1995 (2058)
Q Consensus 1984 ~Aa~a~~~l~~~ 1995 (2058)
+|..|.+.+.+.
T Consensus 847 ~~~wa~~~~~~~ 858 (861)
T 2bpt_A 847 TARWAREQQKRQ 858 (861)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998753
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=417.47 Aligned_cols=725 Identities=15% Similarity=0.194 Sum_probs=553.5
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh-h---
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-L--- 1208 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~-~--- 1208 (2058)
..++....++|..+|+.|.+.|..+ +..|+.. ..+..+.. . . .+.+..+|..++..|++.... .
T Consensus 16 ~~~l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~-~~l~~il~---~-~------~~~~~~vR~~a~~~Lkn~i~~~w~~~ 83 (852)
T 4fdd_A 16 LQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFN-NYLIFVLT---K-L------KSEDEPTRSLSGLILKNNVKAHFQNF 83 (852)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHH-TTSHHHH-HHHHHHHH---T-C------TTSCHHHHHHHHHHHHHHTTTSGGGC
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHH-HhCCCHH-HHHHHHHh---c-c------CCCChHHHHHHHHHHHHHHHHccCCC
Confidence 3455555688999999999999765 3344322 22223322 1 0 023457999999999987542 2
Q ss_pred CCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHH
Q 000143 1209 RTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288 (2058)
Q Consensus 1209 ~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La 1288 (2058)
+++....+...++ +++.|+++.||..+..+...++...+...|+++++.+.+.+.+. + ..+|+.++.+|+.++
T Consensus 84 ~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~----~--~~~r~~al~~L~~i~ 156 (852)
T 4fdd_A 84 PNGVTDFIKSECL-NNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSE----D--YNTCEGAFGALQKIC 156 (852)
T ss_dssp CHHHHHHHHHHHH-TTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCS----S--HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCC----C--HHHHHHHHHHHHHHH
Confidence 2222234555554 67899999999999999888887767788999999998887652 1 268999999999999
Q ss_pred hHhccC------CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc----chHHHHHHHHHHHhcCCCHHHHHHH
Q 000143 1289 KHLAKD------DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD----EAPTLVSRLLDQLMKSDKYGERRGA 1358 (2058)
Q Consensus 1289 ~~l~~~------~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~----~~~~~v~~Ll~~L~~~~~~~vR~~A 1358 (2058)
+..+.. ...+..+++.+++.+.+++..||.++..|+..++..... ....+++.++..+ .++++.+|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~-~d~~~~vr~~a 235 (852)
T 4fdd_A 157 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALA-GDEEPEVRKNV 235 (852)
T ss_dssp HHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHH-TCCCHHHHHHH
T ss_pred HHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc-CCCCHHHHHHH
Confidence 866432 234788999999999999999999999999887754322 2346666666644 45679999999
Q ss_pred HHHHHHHHhhhCccccc-hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH--hcccchhhHHHHHHHHHHHc------
Q 000143 1359 AFGLAGVVKGFGISSLK-KYGIAATLREGLADRNSAKRREGALLAFECLCEK--LGRLFEPYVIQMLPLLLVAF------ 1429 (2058)
Q Consensus 1359 a~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~--lg~~~~p~l~~llp~Ll~~l------ 1429 (2058)
+.+|..+++..+....+ -..+++.+...+.++ ++.+|..|+.++..+++. ....+.||+..++|.++..+
T Consensus 236 ~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d 314 (852)
T 4fdd_A 236 CRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDID 314 (852)
T ss_dssp HHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhH
Confidence 99999999865422111 125778888887776 889999999988888763 22346889999999999887
Q ss_pred -----CC-----------CCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhH
Q 000143 1430 -----SD-----------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2058)
Q Consensus 1430 -----~D-----------~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l 1493 (2058)
+| .+..||.+|..+++.++...+.+.++.++|.+.+.+.+++|++|.+|+.++|.++.++++.+
T Consensus 315 ~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~ 394 (852)
T 4fdd_A 315 IILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGM 394 (852)
T ss_dssp HHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHH
Confidence 44 34568999999999999998877778899999999999999999999999999999999988
Q ss_pred hhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhh
Q 000143 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPS 1573 (2058)
Q Consensus 1494 ~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~ 1573 (2058)
.++++.++|.+...++|+++.||.+|+++++++++.++... ..+.
T Consensus 395 ~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-----------------------------------~~~~ 439 (852)
T 4fdd_A 395 IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP-----------------------------------PDTY 439 (852)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC-----------------------------------TTTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch-----------------------------------HHHH
Confidence 99999999999999999999999999999999987543100 0122
Q ss_pred HhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1574 LALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1574 l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
+..++|.+...+.|.++.+|..|+.+++++++..+ ..+.||++.+++.|...+.+.+......+..+++.++...|+.
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~--~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~ 517 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC--TELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHH 517 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG--GGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh--HhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhh
Confidence 34466667777777788999999999999998654 3589999999999999998888888888999999999988864
Q ss_pred -----CccchHHHHHh---hcccCCChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhc----------------
Q 000143 1654 -----NFPDLVSWLLD---ALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCS---------------- 1706 (2058)
Q Consensus 1654 -----~~~~llp~L~~---~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~---------------- 1706 (2058)
|++.++|.+++ .+. +.+...| .+..+++.++..+|.. +++.+++.++..+.
T Consensus 518 ~~~~~~~~~l~p~l~~~~~~l~-d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~ 595 (852)
T 4fdd_A 518 LNKPEYIQMLMPPLIQKWNMLK-DEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQY 595 (852)
T ss_dssp GCCHHHHHHHHHHHHHHHHHSC-TTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred hccHHHHHHHHHHHHHHHHhcc-cccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 66778888874 333 3334344 6789999999999875 44556664444332
Q ss_pred -cCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc---chhchHHhH
Q 000143 1707 -HQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SLPLLLPAV 1780 (2058)
Q Consensus 1707 -~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~---~l~~llp~L 1780 (2058)
.++..++..++.+++.++..+|.+|.+|+ +.+++.++..+.|+.++||..+..+++.++..++.. .++.++|.+
T Consensus 596 ~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l 675 (852)
T 4fdd_A 596 EAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPIL 675 (852)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 12567899999999999999999999998 789999999999999999999999999999877654 345688888
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcC--CCH
Q 000143 1781 EDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD--VSL 1858 (2058)
Q Consensus 1781 ~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D--~~~ 1858 (2058)
.+.+.++++.+|..++..+|.+...+... + .++.+.+++.++..+.+ ...
T Consensus 676 ~~~l~~~~~~v~~~a~~alg~i~~~~~~~---------------------------~-~p~~~~il~~L~~~l~~~~~~~ 727 (852)
T 4fdd_A 676 GTNLNPEFISVCNNATWAIGEISIQMGIE---------------------------M-QPYIPMVLHQLVEIINRPNTPK 727 (852)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHHHHGGG---------------------------G-GGGTHHHHHHHHHHHTCSSCCH
T ss_pred HHHcCccchHHHHHHHHHHHHHHHHhhHh---------------------------H-HHHHHHHHHHHHHHhCCCCCCc
Confidence 89998888999999999999986432100 0 12334556666655433 356
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhh--cCCC
Q 000143 1859 SVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS-SSSERRQVAGRALGELVRKLGERVLPSIIPILSRG--LKDP 1935 (2058)
Q Consensus 1859 ~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~-~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~--l~d~ 1935 (2058)
.+++.+..+++.+....|..+.++++.+++.+++.+.+ .+.+.|..|.++++.+++..+....+.+..++... ..+.
T Consensus 728 ~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~~ 807 (852)
T 4fdd_A 728 TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINP 807 (852)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSSC
T ss_pred hHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHhcCCC
Confidence 89999999999999988888889999999999988864 56678999999999999986665555554332222 2344
Q ss_pred ChhHHHHHHH
Q 000143 1936 SASRRQGVCI 1945 (2058)
Q Consensus 1936 ~~~vR~~a~~ 1945 (2058)
.++.+.....
T Consensus 808 ~~~l~~~~~~ 817 (852)
T 4fdd_A 808 KDDLRDMFCK 817 (852)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5555554444
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=424.67 Aligned_cols=753 Identities=14% Similarity=0.153 Sum_probs=554.6
Q ss_pred ChHHHHHHHhhh-cCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHHH-------------
Q 000143 1055 QPNEVASALHGV-YTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDI------------- 1120 (2058)
Q Consensus 1055 ~~~~l~~ll~~l-~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~~------------- 1120 (2058)
+.+++.++|.++ .+||+++|.+|++.|++.... +.+.....+..+. ...+.++.+|..|...
T Consensus 2 d~~~l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~---~~~~~~~~l~~il-~~~~~~~~vR~~A~~~lk~~i~~~w~~~~ 77 (861)
T 2bpt_A 2 STAEFAQLLENSILSPDQNIRLTSETQLKKLSND---NFLQFAGLSSQVL-IDENTKLEGRILAALTLKNELVSKDSVKT 77 (861)
T ss_dssp CHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHTTTCCSSHHHH
T ss_pred CHHHHHHHHHHcccCcCHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHH-hCCCCChHHHHHHHHHHHhhccCcChHHH
Confidence 456788899999 999999999999999875411 0111222222222 1223467788887653
Q ss_pred ------Hhh-cCCCCCCCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CC-CchHHHHHHHHHHHHhhcCCCCCCCCC-
Q 000143 1121 ------WDR-YGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YP-DSIQGSLSTLFSLYIRDIGLGGDNVDA- 1189 (2058)
Q Consensus 1121 ------w~~-~~~~~~~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~- 1189 (2058)
|.. .+.+....+ ..+++.+.+++..+|+.++++++.++.. +| ..|+++++.|.+.+. ++
T Consensus 78 ~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~----------~~~ 147 (861)
T 2bpt_A 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTG----------AEQ 147 (861)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTS----------TTS
T ss_pred HHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHh----------cCC
Confidence 332 332222345 7788899999999999999999999865 46 388888888887642 22
Q ss_pred CchhhHHHHHHHHHhhhhhCCC------ChHHHHHHHHHhhccCC--CHHHHHHHHHHHHHHHHhhCc-----cchhhHH
Q 000143 1190 GWLGRQGIALALHSAADVLRTK------DLPVIMTFLISRALADT--NADVRGRMLNAGIMIIDKHGR-----DNVSLLF 1256 (2058)
Q Consensus 1190 ~~~~R~~~~~al~~l~~~~~~~------~~~~l~~~Li~~~L~d~--~~~VR~~al~a~~~~i~~~g~-----~~~~~Ll 1256 (2058)
.+..|.+++.+++.++..+.++ ..+.+++.+. .++.|+ ++.||..++++...++...+. ..++.++
T Consensus 148 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~-~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll 226 (861)
T 2bpt_A 148 PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIV-QGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLM 226 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHH-HHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHH-HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHH
Confidence 5689999999999998876544 2345666664 577887 899999999987765432211 1235577
Q ss_pred HHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccC-CcchH-HHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcc--
Q 000143 1257 PIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQ-- 1332 (2058)
Q Consensus 1257 ~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~-~p~i~-~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~-- 1332 (2058)
+.+...+.+. + ..+|..++.+++.++...+.. .+++. .+++.++..+.+.++.|+..+..++..++....
T Consensus 227 ~~l~~~~~~~----~--~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 300 (861)
T 2bpt_A 227 QVVCEATQAE----D--IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI 300 (861)
T ss_dssp HHHHHHHTCS----C--HHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC----C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 7777665431 1 268999999999999866543 35677 888888889999999999988888777765421
Q ss_pred -------------------cchHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHH
Q 000143 1333 -------------------DEAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL 1387 (2058)
Q Consensus 1333 -------------------~~~~~~v~~Ll~~L~~------~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l 1387 (2058)
.....+++.++..+.. +++|.+|..+..+|+.++..+|...+. .+++.+.+.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~--~l~~~l~~~l 378 (861)
T 2bpt_A 301 AYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE--PVLEFVEQNI 378 (861)
T ss_dssp HHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHT
T ss_pred hhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHH--HHHHHHHHHc
Confidence 1124566777776654 235789999999999999988855443 7888888888
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-----hhHHhHHH
Q 000143 1388 ADRNSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-----QGVKLVLP 1461 (2058)
Q Consensus 1388 ~~~~~~~~R~~al~al~~L~~~lg-~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-----~~v~~llp 1461 (2058)
.+. +|..|++++.+++.++++++ ..+.+|+..++|.++..+.|+++.||.++..+++.++..+++ ..++.++|
T Consensus 379 ~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~ 457 (861)
T 2bpt_A 379 TAD-NWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457 (861)
T ss_dssp TCS-SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHH
T ss_pred CCC-ChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 876 89999999999999998876 668899999999999999999999999999999999987754 24688999
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhhCh----hhHhhhhhhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhcCc---
Q 000143 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLT--DTHPKVQSAGQTALQQVGSVIKN--- 1532 (2058)
Q Consensus 1462 ~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p----~~l~~~L~~Iip~L~~~L~--D~~~~VR~aA~~aL~~l~~~~~~--- 1532 (2058)
.+++.+.+. +++|..++.+++.++..++ ..+.+|++.+++.+...+. |.++.||.+++.+++.++...++
T Consensus 458 ~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~ 536 (861)
T 2bpt_A 458 ACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536 (861)
T ss_dssp HHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhH
Confidence 999999876 9999999999999998754 6688999999999999998 45589999999999999988764
Q ss_pred hhHHhHHHHHHhccCCCChhHHHHHHHHHhcccccc-CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000143 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT-VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~-~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~ 1611 (2058)
+++..++|.+++.+.+. .. +... ...+ -.+....+|..++.+++.++..++.
T Consensus 537 ~~~~~l~~~l~~~l~~~-----------~~--~~~~i~~~~------------~~~~~~~~~~~~~~~l~~l~~~~~~-- 589 (861)
T 2bpt_A 537 ETSASISTFVMDKLGQT-----------MS--VDENQLTLE------------DAQSLQELQSNILTVLAAVIRKSPS-- 589 (861)
T ss_dssp HHHHHHHHHHHHHHHHH-----------TT--SCGGGCCHH------------HHHHHHHHHHHHHHHHHHHHHHCGG--
T ss_pred HHHHHHHHHHHHHHHHH-----------Hh--hhcccCChh------------hHHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 34556666655543210 00 0000 0000 0011235778888999999886543
Q ss_pred chhhhHhhhhHHHHHhhCCCCH-HHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHH
Q 000143 1612 DMIPYIGLLLPEVKKVLVDPIP-EVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2058)
Q Consensus 1612 ~l~pyl~~ll~~L~~~l~d~~~-~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~ 1687 (2058)
.+.||.+.+++.+...+.+.++ .+|..+..+++.++...|++ |++.++|.+++.+. +++..+|..++..++.++.
T Consensus 590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~-~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALN-QVDSPVSITAVGFIADISN 668 (861)
T ss_dssp GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHH
Confidence 6889999999999999998887 89999999999999999886 67889999999996 5566689999999999999
Q ss_pred Hhchh---HHHHhhHHHHHhhccCC--hhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCC----HHHHHHHH
Q 000143 1688 ALGTV---YFEHILPDIIRNCSHQR--ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN----ESVRDAAL 1758 (2058)
Q Consensus 1688 ~~g~~---~l~~llp~Ll~~l~~~~--~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~----~~VR~~a~ 1758 (2058)
.+|.. +++.++|.++..+.+++ +.+|..++.+++.++..+|..|.||++.++|.++..+.... ++..
T Consensus 669 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~---- 744 (861)
T 2bpt_A 669 SLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEAL---- 744 (861)
T ss_dssp HTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHH----
T ss_pred HhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHH----
Confidence 99865 56788898888888764 89999999999999999999999999999999999886422 1000
Q ss_pred HHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhC
Q 000143 1759 GAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLG 1838 (2058)
Q Consensus 1759 ~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg 1838 (2058)
+..+.+|.++++.++.++..+.+. . . .+
T Consensus 745 ---------------------------~~~~~vr~~~l~~~~~i~~~l~~~----------------~----~----~~- 772 (861)
T 2bpt_A 745 ---------------------------DYQIKVLEAVLDAYVGIVAGLHDK----------------P----E----AL- 772 (861)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHTTTC----------------H----H----HH-
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHccC----------------H----H----HH-
Confidence 001234444444444443221000 0 0 00
Q ss_pred hhhHHHHHHHHHHhhcCC----CHHHHHHHHHHHHHHHhhC-hhhHHHhHH-HHHHHHHHHhc---CCCHHHHHHHHHHH
Q 000143 1839 RDKRNEVLAALYMVRSDV----SLSVRQAALHVWKTIVANT-PKTLKEIMP-VLMNTLISSLA---SSSSERRQVAGRAL 1909 (2058)
Q Consensus 1839 ~~~~~~vL~~L~~~~~D~----~~~VR~aA~~~l~~lv~~~-~~~l~~~l~-~L~~~l~~~L~---~~~~~~R~~A~~~L 1909 (2058)
..+...++..+.....|. +..+|.+|..+++.++... +..+.++++ .+++.+++.+. +.+..++..|..++
T Consensus 773 ~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~ 852 (861)
T 2bpt_A 773 FPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAR 852 (861)
T ss_dssp GGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHH
Confidence 011122333333333342 6789999999999999888 777888888 88888877666 46678899999999
Q ss_pred HHHHHHh
Q 000143 1910 GELVRKL 1916 (2058)
Q Consensus 1910 g~L~~~l 1916 (2058)
+.+.+.+
T Consensus 853 ~~~~~~~ 859 (861)
T 2bpt_A 853 EQQKRQL 859 (861)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887644
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=416.10 Aligned_cols=719 Identities=15% Similarity=0.213 Sum_probs=555.4
Q ss_pred chhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhh
Q 000143 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS 1330 (2058)
Q Consensus 1251 ~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~ 1330 (2058)
...++...+...+.. +. .+|..|-..|..+- ..|.....+..++..+.+.+..||..++..+...+..
T Consensus 11 ~~~~l~~~l~~~~s~-----d~--~~r~~Ae~~L~~~~-----~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~ 78 (852)
T 4fdd_A 11 GLQQILQLLKESQSP-----DT--TIQRTVQQKLEQLN-----QYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKA 78 (852)
T ss_dssp HHHHHHHHHHHHTCS-----CH--HHHHHHHHHHHHHT-----TSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHhCc-----CH--HHHHHHHHHHHHHH-----hCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 345566666666432 12 57888888776542 2343444455555555677889999887777666543
Q ss_pred ----cccchHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000143 1331 ----MQDEAPTLVSR-LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFEC 1405 (2058)
Q Consensus 1331 ----~~~~~~~~v~~-Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~ 1405 (2058)
..++....+.. +++. ..+++..+|..++.+++.+++..++..+ +++++.+.+.+.+. ++..|++++.+++.
T Consensus 79 ~w~~~~~~~~~~ik~~ll~~-l~~~~~~vr~~~a~~i~~ia~~~~~~~w--p~ll~~L~~~l~~~-~~~~r~~al~~L~~ 154 (852)
T 4fdd_A 79 HFQNFPNGVTDFIKSECLNN-IGDSSPLIRATVGILITTIASKGELQNW--PDLLPKLCSLLDSE-DYNTCEGAFGALQK 154 (852)
T ss_dssp SGGGCCHHHHHHHHHHHHTT-TTCSSHHHHHHHHHHHHHHHHHTTTTTC--TTHHHHHHHHHSCS-SHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHhcCcccc--HHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 23334444444 4444 4566789999999999999987666554 38999999999886 89999999999999
Q ss_pred HHHHhcccch-----hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh---hHHhHHHHHHHhccCCChHHHHH
Q 000143 1406 LCEKLGRLFE-----PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GVKLVLPSLLKGLEDKAWRTKQS 1477 (2058)
Q Consensus 1406 L~~~lg~~~~-----p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~---~v~~llp~Ll~~L~~~~~~~R~~ 1477 (2058)
+++..+..+. .++..++|.++..++|+++.||..|..++..++...+.. .++.+++.++..+.++++.+|..
T Consensus 155 i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~ 234 (852)
T 4fdd_A 155 ICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKN 234 (852)
T ss_dssp HHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 9998875443 347889999999999999999999999998776544332 23678899999999999999999
Q ss_pred HHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc-----CchhHHhHHHHHHhcc------
Q 000143 1478 SVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-----KNPEIASLVPTLLMGL------ 1546 (2058)
Q Consensus 1478 a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~-----~~~~i~~lvp~Ll~~l------ 1546 (2058)
++.+|+.++...|+.+.++++.+++.+...+.|.++.||..|++.+..+++.. -.|++..++|.++..+
T Consensus 235 a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d 314 (852)
T 4fdd_A 235 VCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDID 314 (852)
T ss_dssp HHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhH
Confidence 99999999999999999999999999999999999999999999999998632 1467788999998887
Q ss_pred -----CC-----------CChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCC
Q 000143 1547 -----TD-----------PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609 (2058)
Q Consensus 1547 -----~d-----------~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~ 1609 (2058)
.| .+..+| .+..++.... .......+..++|.+...+.+.+|.+|..|+.++|.+++..
T Consensus 315 ~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la--~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~-- 390 (852)
T 4fdd_A 315 IILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA--NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGC-- 390 (852)
T ss_dssp HHHHHC------------CCCCHHHHHHHHHHHHH--HHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT--
T ss_pred HHHhcCCcccccccccccccchHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc--
Confidence 34 223455 3444443311 11112345668899999999999999999999999998743
Q ss_pred CCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHH
Q 000143 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2058)
Q Consensus 1610 ~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i 1685 (2058)
.+.+.+|++.++|.+...+.|+++.||..++.++|.++..+++. +++.+++.+++.+. +.+..+|..++.+++.+
T Consensus 391 ~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~-d~~~~vr~~a~~aL~~l 469 (852)
T 4fdd_A 391 MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL-DSNKRVQEAACSAFATL 469 (852)
T ss_dssp HHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 34667899999999999999999999999999999999877653 67789999999887 45677999999999999
Q ss_pred HHHhchh---HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhH--HHhHHHHHHHHHH---hccCCCHHHHHHH
Q 000143 1686 LAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF--QNYLQQVLPAILD---GLADENESVRDAA 1757 (2058)
Q Consensus 1686 ~~~~g~~---~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f--~pyl~~ilp~Ll~---~L~d~~~~VR~~a 1757 (2058)
+..+|.. +++.+++.+...+++.+......++.+++.++...|..+ .+|++.++|.+++ .+.|.++.+| .+
T Consensus 470 ~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~ 548 (852)
T 4fdd_A 470 EEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PL 548 (852)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HH
T ss_pred HHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HH
Confidence 9988865 678888888888887777777788999999999888766 3599999999984 5667777776 78
Q ss_pred HHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHh
Q 000143 1758 LGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVL 1837 (2058)
Q Consensus 1758 ~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~L 1837 (2058)
++++..++..++.. +.|.+...+ ...+..+...+.. ......
T Consensus 549 ~~~l~~i~~~~g~~----~~~~~~~i~--------~~~~~~l~~~l~~--------------------------~~~~~~ 590 (852)
T 4fdd_A 549 LECLSSVATALQSG----FLPYCEPVY--------QRCVNLVQKTLAQ--------------------------AMLNNA 590 (852)
T ss_dssp HHHHHHHHHHHGGG----GHHHHHHHH--------HHHHHHHHHHHHH--------------------------HHHHHH
T ss_pred HHHHHHHHHHHhHh----HHHHHHHHH--------HHHHHHHHHHHHH--------------------------HHHhhc
Confidence 89999988887764 233322211 0112222221100 000000
Q ss_pred ChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000143 1838 GRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIM--PVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2058)
Q Consensus 1838 g~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l--~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~ 1915 (2058)
.++ ...+.+..+|..+++.++.++...+..+.+++ +.+++.+...+.++++++|..+..++|++++.
T Consensus 591 ~~~-----------~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~ 659 (852)
T 4fdd_A 591 QPD-----------QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA 659 (852)
T ss_dssp CTT-----------TSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCc-----------ccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Confidence 000 00112344677888899999888888888887 78999999999999999999999999999999
Q ss_pred hCcc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCC--CHHHHHHHHHHHH
Q 000143 1916 LGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS--ILEVRESAGLAFS 1990 (2058)
Q Consensus 1916 lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~--d~~VR~~Aa~a~~ 1990 (2058)
++.. +++.++|.+.+.++++++.+|.++++++|++....+. .+.||++.+++.+.+.+.++ ...++++|+.++|
T Consensus 660 ~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~-~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~ig 738 (852)
T 4fdd_A 660 CFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI-EMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIG 738 (852)
T ss_dssp CGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG-GGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH-hHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 8865 4578999999999888899999999999999988865 58899999999999999876 5689999999999
Q ss_pred HHHHHhCh---hhHHHHHHHHHHhcCC---CcchHHHHHHHHHHHhhcCCccchhhh
Q 000143 1991 TLFKSAGM---QAIDEIVPTLLHALED---DQTSDTALDGLKQILSVRTTAVLPHIL 2041 (2058)
Q Consensus 1991 ~l~~~~g~---~~~~~ilp~Ll~~L~~---~~~~~~al~aL~~i~~~~~~~~lp~li 2041 (2058)
++....+. ++++++++.|++.|++ .++++.++.+|+.+++.+|+.+++.+.
T Consensus 739 rl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~~~~~~~ 795 (852)
T 4fdd_A 739 RLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFI 795 (852)
T ss_dssp HHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGGTGGGHH
T ss_pred HHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence 99987432 5789999999999974 346899999999999999988877655
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=413.52 Aligned_cols=745 Identities=15% Similarity=0.169 Sum_probs=545.7
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhh------
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD------ 1206 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~------ 1206 (2058)
..++..+.+++..+|+.|.+.|..+.+.+ .+.+...|...+.. . +.+..+|..++..|++...
T Consensus 4 ~~~L~~~~s~d~~~r~~A~~~L~~~~~~~---~~~~~~~L~~~l~~---~-----~~~~~vR~~a~~~Lk~~i~~~~~~~ 72 (876)
T 1qgr_A 4 ITILEKTVSPDRLELEAAQKFLERAAVEN---LPTFLVELSRVLAN---P-----GNSQVARVAAGLQIKNSLTSKDPDI 72 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHC---T-----TSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcC---hhhHHHHHHHHHhC---C-----CCCHHHHHHHHHHHHHhccccchHh
Confidence 45667777889999999999998766532 22334444443321 0 1235689999999988642
Q ss_pred ---------hhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC-ccchhhHHHHHHHHhcccCCChhHHHHH
Q 000143 1207 ---------VLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDNVSLLFPIFENYLNKKASDEEKYDLV 1276 (2058)
Q Consensus 1207 ---------~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g-~~~~~~Ll~~l~~~L~~~~~~~e~~~~v 1276 (2058)
.+.++....+...++ +++.++++.+ ..+..+...+....+ ..+|++++|.+...+.++. . ...+
T Consensus 73 ~~~~~~~w~~l~~~~~~~ik~~ll-~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~-~---~~~~ 146 (876)
T 1qgr_A 73 KAQYQQRWLAIDANARREVKNYVL-HTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPN-S---TEHM 146 (876)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH-HHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTT-C---CHHH
T ss_pred HHHHHhhhccCCHHHHHHHHHHHH-HHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCC-C---CHHH
Confidence 111122233444444 5677777777 777777666666544 3789999999999886521 0 1268
Q ss_pred HHHHHHHHHHHHhHhcc--CCcchHHHHHHHHhhhCCC--CHHHHHHHHHhhHhhHhhcccch-----HH-HHHHHHHHH
Q 000143 1277 REGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDEA-----PT-LVSRLLDQL 1346 (2058)
Q Consensus 1277 R~~av~~Lg~La~~l~~--~~p~i~~iv~~Ll~~L~~~--~~~V~~av~~~L~~l~~~~~~~~-----~~-~v~~Ll~~L 1346 (2058)
|+.++.+++.+++.+.. ..+++..+++.+...+.++ +..+|..+.+|+..++...+... .. +++.+.+ +
T Consensus 147 r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~-~ 225 (876)
T 1qgr_A 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-A 225 (876)
T ss_dssp HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-H
Confidence 99999999999986532 1356788999999999887 68999999999988776543221 12 3444444 4
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCccccc-hh-chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-------------
Q 000143 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKLG------------- 1411 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~-~~-~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg------------- 1411 (2058)
..++++.+|..+..++..++...+....+ -. .+++.+...+.+. +..+|..++..+..+++...
T Consensus 226 ~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 304 (876)
T 1qgr_A 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (876)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHhHhhhhccccccC
Confidence 45667899999999999999876533221 11 5777777777665 78899999998888886531
Q ss_pred --------ccchhhHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHH
Q 000143 1412 --------RLFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2058)
Q Consensus 1412 --------~~~~p~l~~llp~Ll~~l~-------D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~ 1476 (2058)
....+++..++|.++..+. |++..+|.+|..+++.++..++...++.++|.+...+.+.+|++|.
T Consensus 305 ~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~~~~~r~ 384 (876)
T 1qgr_A 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 384 (876)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred CCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCCChHHHH
Confidence 1234567788999988875 3467899999999999999888766788999999999999999999
Q ss_pred HHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHH
Q 000143 1477 SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555 (2058)
Q Consensus 1477 ~a~~~Lg~la~~~p-~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~ 1555 (2058)
+++.++|.++.+.+ +.+.++++.++|.+...++|+++.||.+|+++++++++.+++..
T Consensus 385 ~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--------------------- 443 (876)
T 1qgr_A 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA--------------------- 443 (876)
T ss_dssp HHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGT---------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhc---------------------
Confidence 99999999998876 66788999999999999999999999999999999998754200
Q ss_pred HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC------------CCCchhhhHhhhhHH
Q 000143 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT------------EPKDMIPYIGLLLPE 1623 (2058)
Q Consensus 1556 al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~------------~~~~l~pyl~~ll~~ 1623 (2058)
...+.+..++|.+...+.+. +.+|..++.++++++...+ ....+.||++.++|.
T Consensus 444 -------------~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~ 509 (876)
T 1qgr_A 444 -------------INDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQK 509 (876)
T ss_dssp -------------SSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHH
T ss_pred -------------ccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHH
Confidence 00112333455555555553 6677778888888876543 124578999999999
Q ss_pred HHHhhCCC---CHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhccc----------CCC----hHHHhhHHHHHH
Q 000143 1624 VKKVLVDP---IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKS----------DNS----NVERSGAAQGLS 1683 (2058)
Q Consensus 1624 L~~~l~d~---~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~----------d~~----~~~R~~aa~~L~ 1683 (2058)
+...+.+. .+.+|..+.++++.++...|.+ +.+.++|.+++.+.. +.+ ...|..+..+++
T Consensus 510 L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~ 589 (876)
T 1qgr_A 510 LLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQ 589 (876)
T ss_dssp HHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHH
Confidence 99998865 4689999999999999999876 445777777766652 222 335677888999
Q ss_pred HHHHHhc-hh---HHHHhhHHHHHhhccCC--hhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCC-CHHHHHH
Q 000143 1684 EVLAALG-TV---YFEHILPDIIRNCSHQR--ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE-NESVRDA 1756 (2058)
Q Consensus 1684 ~i~~~~g-~~---~l~~llp~Ll~~l~~~~--~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~-~~~VR~~ 1756 (2058)
.++..+| .. +++.++|.++..+.+.. +.+|+.++.+++.++...|..|.||++.++|.+...+.+. ++.+|..
T Consensus 590 ~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~ 669 (876)
T 1qgr_A 590 NVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLA 669 (876)
T ss_dssp HHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 9998888 43 66888999998888764 5899999999999999999999999999999999999886 7889999
Q ss_pred HHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHH
Q 000143 1757 ALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEV 1836 (2058)
Q Consensus 1757 a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~ 1836 (2058)
+..+++.++...+.. +.|.+. .++..+ .+.
T Consensus 670 a~~~l~~l~~~~~~~----~~~~~~---------------~i~~~l-------------------------------~~~ 699 (876)
T 1qgr_A 670 AVGLVGDLCRALQSN----IIPFCD---------------EVMQLL-------------------------------LEN 699 (876)
T ss_dssp HHHHHHHHHHHHGGG----GHHHHH---------------HHHHHH-------------------------------HHH
T ss_pred HHHHHHHHHHHHHHh----hhhhHH---------------HHHHHH-------------------------------HHH
Confidence 999888887766532 111110 011111 111
Q ss_pred hChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCC-----------HHHHHHH
Q 000143 1837 LGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-----------SERRQVA 1905 (2058)
Q Consensus 1837 Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~-----------~~~R~~A 1905 (2058)
+.. .+.+..+|..+..+++.++...+..+.++++.+++.+...+.++. ..+|..+
T Consensus 700 l~~--------------~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~ 765 (876)
T 1qgr_A 700 LGN--------------ENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESC 765 (876)
T ss_dssp HTC--------------TTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHH
T ss_pred hCC--------------ccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHH
Confidence 110 012234677777888888777777778889999998888776542 2789999
Q ss_pred HHHHHHHHHHhCcc-------------hhhchHHHHhhhcCCC--ChhHHHHHHHHHHHHHHhhChhhhHhH-HhhHHHH
Q 000143 1906 GRALGELVRKLGER-------------VLPSIIPILSRGLKDP--SASRRQGVCIGLSEVMASAGKSQLLSF-MDELIPT 1969 (2058)
Q Consensus 1906 ~~~Lg~L~~~lg~~-------------~l~~llp~L~~~l~d~--~~~vR~~a~~aL~eii~~~~~~~l~~~-~~~ll~~ 1969 (2058)
..+++.++..+|.. +++.+++.+.....++ +..+|..++.++++++...|...+.+| .+.+++.
T Consensus 766 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ 845 (876)
T 1qgr_A 766 LEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHE 845 (876)
T ss_dssp HHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHH
Confidence 99999999887641 2355566665555666 678999999999999999976356777 4778888
Q ss_pred HHH-HhcCCCHHHHHHHHHHHHHHHHH
Q 000143 1970 IRT-ALCDSILEVRESAGLAFSTLFKS 1995 (2058)
Q Consensus 1970 L~~-~L~D~d~~VR~~Aa~a~~~l~~~ 1995 (2058)
+.. .+.|+++++|++|++|+|.+.+.
T Consensus 846 ll~~~l~~~~~~~r~~a~~a~~~~~~~ 872 (876)
T 1qgr_A 846 LLTEGRRSKTNKAKTLARWATKELRKL 872 (876)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCHhHHHHHHHHHHHHHHh
Confidence 888 89999999999999999999864
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=395.67 Aligned_cols=564 Identities=19% Similarity=0.223 Sum_probs=454.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH
Q 000143 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV 1418 (2058)
Q Consensus 1339 v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l 1418 (2058)
+..+++.+.+ +++.+|..|+..++.++...|+... ...++|.|.... ++ ++.+|..+..+++.+....+. ..|.
T Consensus 12 i~~l~~~l~s-~~~~~R~~A~~~l~~i~~~~~~~~~-~~~l~~~L~~~~-d~-~~~vr~~~~~~L~~~~~~~~~--~~~~ 85 (588)
T 1b3u_A 12 IAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERT-RSELLPFLTDTI-YD-EDEVLLALAEQLGTFTTLVGG--PEYV 85 (588)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHH-HHTHHHHHHHTC-CC-CHHHHHHHHHHHTTCSGGGTS--GGGG
T ss_pred HHHHHHHhhc-ccHHHHHHHHHhHHHHHHHhCHHHH-HHHHHHHHHHhc-CC-cHHHHHHHHHHHHHHHhccCc--HHHH
Confidence 5666776654 4689999999999998887776543 236888888766 43 788999988888776665543 3466
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1419 ~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
..++|.+...+.|+++.||..|..++..++..++++.+ +.++|.+.....+++|..|..++.+++.++...+.. ..
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~~ 162 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---VK 162 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---HH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---HH
Confidence 77888888888999999999999999999998887766 456677766667888999999999999998877654 34
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhh
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~ 1576 (2058)
+.++|.+...++|+++.||.+|+.+|+.+++.++++ +...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~--------------------------------------- 203 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE--------------------------------------- 203 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHT---------------------------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHH---------------------------------------
Confidence 678899999999999999999999999999876542 1233
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-Cc
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NF 1655 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-~~ 1655 (2058)
++|.+...++|.++.+|..|+.+++.++..+++ ..+.+.++|.+...+.|++|.+|..++.++|.++...|++ +.
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 279 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccch
Confidence 445555555666677777788888887765322 2345567888888888999999999999999999888765 34
Q ss_pred cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh-----HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchh
Q 000143 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2058)
Q Consensus 1656 ~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~-----~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~ 1730 (2058)
++++|.+.+.++ |+++.+|..++.+++.++..+|.+ +.+.++|.+...++++++.+|..++.+++.++..+|..
T Consensus 280 ~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~ 358 (588)
T 1b3u_A 280 TDLVPAFQNLMK-DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 678888888776 567778999999999998888764 56789999999999999999999999999999999975
Q ss_pred HHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccc-hhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCC
Q 000143 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2058)
Q Consensus 1731 f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~-l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~ 1809 (2058)
. +.+.++|.+...+.|++++||..++.++..+...++... .+.++|.+...+.|.+|++|..+++.++.+...
T Consensus 359 ~--~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~---- 432 (588)
T 1b3u_A 359 N--TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ---- 432 (588)
T ss_dssp H--HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----
T ss_pred H--HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH----
Confidence 4 467789999999999999999999999999988766442 356899999999999999999999999887522
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHHhChhhH-HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHH
Q 000143 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR-NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888 (2058)
Q Consensus 1810 ~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~-~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~ 1888 (2058)
+|.+++ +.+++.+...+.|.+..||.+|...++.++...+.. .+.+.+++
T Consensus 433 ---------------------------~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp 483 (588)
T 1b3u_A 433 ---------------------------LGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIP 483 (588)
T ss_dssp ---------------------------HCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHH
T ss_pred ---------------------------cCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHH
Confidence 232222 245666666788999999999999999998766543 24566777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHH
Q 000143 1889 TLISSLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2058)
Q Consensus 1889 ~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll 1967 (2058)
.+.....++++.+|..++.+++.++..+|.. +.+.++|.+.+.++|+++++|..++.+++.+....+.+.+ .+.++
T Consensus 484 ~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~---~~~~~ 560 (588)
T 1b3u_A 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVK 560 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH---HHHHH
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh---HHHHH
Confidence 7777788999999999999999999988865 5689999999999999999999999999999988876432 26788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1968 PTIRTALCDSILEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1968 ~~L~~~L~D~d~~VR~~Aa~a~~~l~ 1993 (2058)
|.+..++.|+|++||++|..|++.+.
T Consensus 561 p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 561 PILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 88988889999999999999998763
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=387.56 Aligned_cols=714 Identities=14% Similarity=0.149 Sum_probs=552.5
Q ss_pred HHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCC--CCHHHHHHHHHhhHhhHhh---------------cccchHH
Q 000143 1275 LVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQS---------------MQDEAPT 1337 (2058)
Q Consensus 1275 ~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~--~~~~V~~av~~~L~~l~~~---------------~~~~~~~ 1337 (2058)
.+|..|...|..+... ..+.+...|+..+.+ .+..+|..++.++...+.. +.+....
T Consensus 16 ~~r~~A~~~L~~~~~~------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~ 89 (876)
T 1qgr_A 16 LELEAAQKFLERAAVE------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARR 89 (876)
T ss_dssp HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHhc------ChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHH
Confidence 6899999988887642 134566777777766 4578888888777765421 1222223
Q ss_pred HH-HHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-cccchhchHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhc-cc
Q 000143 1338 LV-SRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLADRN-SAKRREGALLAFECLCEKLG-RL 1413 (2058)
Q Consensus 1338 ~v-~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~-~~l~~~~il~~L~~~l~~~~-~~~~R~~al~al~~L~~~lg-~~ 1413 (2058)
.+ ..+++.+.+ ++..+ ..++.+++.++...++ ..+ .++++.+.+.+.+++ ++.+|++++.+++.+++.++ +.
T Consensus 90 ~ik~~ll~~l~~-~~~~~-~~~~~~l~~i~~~~~~~~~w--~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (876)
T 1qgr_A 90 EVKNYVLHTLGT-ETYRP-SSASQCVAGIACAEIPVNQW--PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (876)
T ss_dssp HHHHHHHHHTTT-CCSSS-CHHHHHHHHHHHHHGGGTCC--TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHhCC-CcHHH-HHHHHHHHHHHHhhCccccc--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh
Confidence 33 345555544 44556 8899999999987654 333 489999999998764 78999999999999998763 55
Q ss_pred chhhHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHHHhhhhh----hH-HhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1414 FEPYVIQMLPLLLVAFSDQ--VVAVREAAECAARAMMSQLSAQ----GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~--~~~VR~aA~~al~~l~~~l~~~----~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
+.+++..+++.+...+.|+ +..||..|.+++..++..++.. .. ..+++.+.+.+.+.++.+|..++..++.++
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 7889999999999999987 6899999999999987654432 11 347788888888889999999999999999
Q ss_pred hhChhhHhhhhh-hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC------------------------chhHHhHHHH
Q 000143 1487 YCAPQQLSQCLP-KIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK------------------------NPEIASLVPT 1541 (2058)
Q Consensus 1487 ~~~p~~l~~~L~-~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~------------------------~~~i~~lvp~ 1541 (2058)
...++.+.+++. .+++.+...+.|.++.||..|++.+..+++... .+++..++|.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 325 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHH
Confidence 999999999999 999999999999999999999999998886420 1234678888
Q ss_pred HHhccC-------CCChhHH-HHHHHHHhc-cccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCc
Q 000143 1542 LLMGLT-------DPNDHTK-YSLDILLQT-TFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2058)
Q Consensus 1542 Ll~~l~-------d~~~~vr-~al~~L~~~-~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~ 1612 (2058)
++..+. |.++.+| .+..++... ...+ ...+..++|.+...+.+.+|.+|..++.+++.++... .++.
T Consensus 326 ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~-~~~~ 401 (876)
T 1qgr_A 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP-EPSQ 401 (876)
T ss_dssp HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHH
T ss_pred HHHHhhcccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC-CHHH
Confidence 888774 2345566 344444331 1111 2345678888889999999999999999999988642 2245
Q ss_pred hhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc-----cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHH
Q 000143 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-----ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2058)
Q Consensus 1613 l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~-----~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~ 1687 (2058)
+.+|++.++|.+...+.|+++.||..|+.+++.++...++ .+++.+++.++..+.+ . ..+|..++.+++.++.
T Consensus 402 ~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 402 LKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-E-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-C-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-C-HHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999998765 4778899999999875 3 6689999999999998
Q ss_pred Hhc-----------------hhHHHHhhHHHHHhhccC---ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhcc
Q 000143 1688 ALG-----------------TVYFEHILPDIIRNCSHQ---RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2058)
Q Consensus 1688 ~~g-----------------~~~l~~llp~Ll~~l~~~---~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~ 1747 (2058)
.++ ..+++.++|.++..+.+. +..+|..++.+++.++...|.++.+|+..++|.++..+.
T Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~ 559 (876)
T 1qgr_A 480 AAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQ 559 (876)
T ss_dssp HHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHH
T ss_pred HhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHH
Confidence 876 126788999999888765 468999999999999999999999999999999988765
Q ss_pred C-----------CC----HHHHHHHHHHHHHHHHHhc-cc---chhchHHhHhhhcCCCC--HHHHHHHHHHHHHHHHHh
Q 000143 1748 D-----------EN----ESVRDAALGAGHVLVEHYA-TT---SLPLLLPAVEDGIFNDN--WRIRQSSVELLGDLLFKV 1806 (2058)
Q Consensus 1748 d-----------~~----~~VR~~a~~al~~lv~~~~-~~---~l~~llp~L~~~l~d~~--~~vR~sav~ll~~Ll~~~ 1806 (2058)
+ ++ +++|..++.++..++..++ .. .++.++|.+...+.+.+ +.+|..++.+++.++...
T Consensus 560 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~ 639 (876)
T 1qgr_A 560 QVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL 639 (876)
T ss_dssp HHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH
Confidence 2 22 4678888999998887766 32 34557888888887664 578999999888876331
Q ss_pred hCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhHHHhHHH
Q 000143 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV-SLSVRQAALHVWKTIVANTPKTLKEIMPV 1885 (2058)
Q Consensus 1807 ~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~-~~~VR~aA~~~l~~lv~~~~~~l~~~l~~ 1885 (2058)
. . .+ ..+.+.+++.+...+.+. ...+|..|..+++.++...+..+.++++.
T Consensus 640 ~-~--------------------------~~-~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 691 (876)
T 1qgr_A 640 G-G--------------------------EF-LKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDE 691 (876)
T ss_dssp G-G--------------------------GG-GGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred H-h--------------------------hH-HHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 1 0 00 012234555555555555 78899999999999998777788899999
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhCcc---hhhchHHHHhhhcCCCC-----------hhHHHHHHHHHHH
Q 000143 1886 LMNTLISSLAS--SSSERRQVAGRALGELVRKLGER---VLPSIIPILSRGLKDPS-----------ASRRQGVCIGLSE 1949 (2058)
Q Consensus 1886 L~~~l~~~L~~--~~~~~R~~A~~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~-----------~~vR~~a~~aL~e 1949 (2058)
+++.+...+.+ .+.++|..++.++|.++..+|+. +++.++|.+.+.++++. ..+|.++..+++.
T Consensus 692 i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~ 771 (876)
T 1qgr_A 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTG 771 (876)
T ss_dssp HHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 46789999999999999999876 36788888888776442 2688899999998
Q ss_pred HHHhhCh---------hhhHhHHhhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhCh-h---h-HHHHHHHHHH-hc
Q 000143 1950 VMASAGK---------SQLLSFMDELIPTIRTALCDS--ILEVRESAGLAFSTLFKSAGM-Q---A-IDEIVPTLLH-AL 2012 (2058)
Q Consensus 1950 ii~~~~~---------~~l~~~~~~ll~~L~~~L~D~--d~~VR~~Aa~a~~~l~~~~g~-~---~-~~~ilp~Ll~-~L 2012 (2058)
++...+. +.+.+|++.+++.+.....|+ +..||..|+.++|.+....|. . + .+.+++.++. .+
T Consensus 772 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l 851 (876)
T 1qgr_A 772 IVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGR 851 (876)
T ss_dssp HHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHh
Confidence 8877653 467889999998888877777 789999999999999999886 3 2 3568999999 88
Q ss_pred CCCc--chHHHHHHHHHHHhhc
Q 000143 2013 EDDQ--TSDTALDGLKQILSVR 2032 (2058)
Q Consensus 2013 ~~~~--~~~~al~aL~~i~~~~ 2032 (2058)
.+++ .|.+|..|++.+.+..
T Consensus 852 ~~~~~~~r~~a~~a~~~~~~~~ 873 (876)
T 1qgr_A 852 RSKTNKAKTLARWATKELRKLK 873 (876)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHhHHHHHHHHHHHHHHhh
Confidence 6654 6889999999888654
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=370.20 Aligned_cols=556 Identities=17% Similarity=0.207 Sum_probs=456.5
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhhCc-cchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHH
Q 000143 1223 RALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301 (2058)
Q Consensus 1223 ~~L~d~~~~VR~~al~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~i 1301 (2058)
..+.++++.+|..++..+..+....|+ ..+++++|.+...+ + ++ +.+|..+...||.++.++... .+...+
T Consensus 17 ~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d----~~--~~vr~~~~~~L~~~~~~~~~~-~~~~~l 88 (588)
T 1b3u_A 17 DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-Y----DE--DEVLLALAEQLGTFTTLVGGP-EYVHCL 88 (588)
T ss_dssp HHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-C----CC--HHHHHHHHHHHTTCSGGGTSG-GGGGGG
T ss_pred HHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-C----Cc--HHHHHHHHHHHHHHHhccCcH-HHHHHH
Confidence 568899999999998887776665554 34678889887654 1 12 268999999999888766432 345667
Q ss_pred HHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccc-hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchH
Q 000143 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIA 1380 (2058)
Q Consensus 1302 v~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~-~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il 1380 (2058)
++.|...+.++++.||..+..++..+....++. ....+..++..+.+++++..|..|+..++.++...+... ...++
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~--~~~l~ 166 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KAELR 166 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--HHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH--HHHHH
Confidence 777777778899999999999999988765432 344455566667777788999999999999887776433 23688
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhH-HhH
Q 000143 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGV-KLV 1459 (2058)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v-~~l 1459 (2058)
+.+.+.+.|+ ++.+|..++.+++.+++..|. +.+...++|.+...++|+++.||..|..+++.++...+++.. +.+
T Consensus 167 ~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~ 243 (588)
T 1b3u_A 167 QYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243 (588)
T ss_dssp HHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHT
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8888888776 899999999999999988775 456778999999999999999999999999999988877654 678
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-----hh
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PE 1534 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~ 1534 (2058)
+|.+...+.|++|++|..++.++|.++...+.. .+.+.++|.+...++|+++.||.+|+++++.++..++. ++
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 321 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVI 321 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHH
Confidence 899999999999999999999999999865443 23467899999999999999999999999999998865 35
Q ss_pred HHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCC-hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCc
Q 000143 1535 IASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr~-al~~L~~~~f~~~~~-~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~ 1612 (2058)
...++|.+...+.|+++.+|. ++.+++.. ..... ......++|.+...++|+++++|..++..++.++..++.
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l--~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--- 396 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGL--SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--- 396 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGG--HHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH---
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--HHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH---
Confidence 688999999999999999984 44444431 11111 122456889999999999999999999999998875432
Q ss_pred hhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCc-cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch
Q 000143 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2058)
Q Consensus 1613 l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~-~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~ 1691 (2058)
..+.+.++|.+...+.|++|.+|..++.+++.++..+|.+.+ +.++|.++..+. |..+.+|..++.+++.++..+|.
T Consensus 397 -~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 397 -RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-DHVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp -HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHHCH
T ss_pred -HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHhCc
Confidence 235567889999999999999999999999999999998744 578999988887 56677999999999999999998
Q ss_pred h-HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc
Q 000143 1692 V-YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT 1770 (2058)
Q Consensus 1692 ~-~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~ 1770 (2058)
+ +.+.++|.+.....++++.+|..++.+++.++..+|..+ |.+.++|.++..+.|++++||..++++++.+...++.
T Consensus 475 ~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 475 EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 7 457899999988889999999999999999999998764 8899999999999999999999999999999877765
Q ss_pred cch-hchHHhHhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1771 TSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1771 ~~l-~~llp~L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
... +.++|.+.+.+.|.++.+|..+.+.++.+
T Consensus 553 ~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 553 STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 543 45889898888999999999999988764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=268.37 Aligned_cols=310 Identities=26% Similarity=0.477 Sum_probs=280.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--ccch
Q 000143 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG--RLFE 1415 (2058)
Q Consensus 1338 ~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg--~~~~ 1415 (2058)
.+..+++.+..++ ...++.++..++.++.+-+........+++.+...+.++++. ++|+.+++.+++..+ ..++
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~~e 90 (986)
T 2iw3_A 15 VLEELFQKLSVAT-ADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPSVE 90 (986)
T ss_dssp HHHHHHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTTTH
T ss_pred HHHHHHhhccccc-hhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCCcc
Confidence 4455666666554 566788999999998865444333357888999999887666 999999999997665 4789
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhChhhHh
Q 000143 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLS 1494 (2058)
Q Consensus 1416 p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~-~~~~R~~a~~~Lg~la~~~p~~l~ 1494 (2058)
||+-.++|.++..++|....||.+|..++..++..++++.++.++|.+++.+.+. .|+.|.+|+.+++.++..+|+++.
T Consensus 91 ~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~ 170 (986)
T 2iw3_A 91 PYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVA 170 (986)
T ss_dssp HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999855 699999999999999999999999
Q ss_pred hhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhH
Q 000143 1495 QCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1495 ~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l 1574 (2058)
.++|+++|.+.+++.|..++|..+|..++..++..+.|.++...+|.|++++.+|+ .+.+|+..|+.++|+..++.|.+
T Consensus 171 ~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~-~~~~~~~~l~~~tfv~~v~~~~l 249 (986)
T 2iw3_A 171 LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPT-EVPETVHLLGATTFVAEVTPATL 249 (986)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTT-HHHHHHHHHTTCCCCSCCCHHHH
T ss_pred HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChh-hhHHHHHHhhcCeeEeeecchhH
Confidence 99999999999999999999999999999999999999999999999999999995 58899999999999999999999
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCC-CCHHHHHHHHHHHHHHHHhhcc
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d-~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
+.+.|.|.++|++++..++++++-+++|||+++.+|.+..||++.++|.+.+.... .+|++|+.+.+|+..+.+..+.
T Consensus 250 ~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 250 SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999998764 6899999999999999876554
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-18 Score=244.08 Aligned_cols=649 Identities=12% Similarity=0.119 Sum_probs=408.0
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcC--C
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYG--Y 1126 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~--~ 1126 (2058)
.++.++|.++++||..+| |++.|++.. ..+.....+..+. ...+.+..+|..|.. -|.... .
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~-----~~p~~~~~L~~il-~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~ 76 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLE-----TQDGFGLTLLHVI-ASTNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHH-----TSTTHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhh-----cCCCHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 467888999999999999 999998763 1123333444443 233456788888754 365211 1
Q ss_pred CCC----CCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHH
Q 000143 1127 DFG----TDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2058)
Q Consensus 1127 ~~~----~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~a 1200 (2058)
.++ ..+ ..+++.+.+++..+|..++.+++.++.. +|+.|+++++.|.+.+. + .+...+.++..+
T Consensus 77 ~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~----s------~~~~~~~~aL~~ 146 (960)
T 1wa5_C 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLS----N------DDMVTNKGVLTV 146 (960)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCC----S------SCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhC----C------CCHHHHHHHHHH
Confidence 122 234 6788888777799999999999999864 78889999998886531 1 223578899999
Q ss_pred HHHhhhhhCC--C--C----h--------HHHHHHHH--HhhccCCCH---HHHH--HHHHHHHHHHHh---h--C---c
Q 000143 1201 LHSAADVLRT--K--D----L--------PVIMTFLI--SRALADTNA---DVRG--RMLNAGIMIIDK---H--G---R 1249 (2058)
Q Consensus 1201 l~~l~~~~~~--~--~----~--------~~l~~~Li--~~~L~d~~~---~VR~--~al~a~~~~i~~---~--g---~ 1249 (2058)
+..+++.... . + . +.++..+. ..++.+... .+|. .++.....++.. . + .
T Consensus 147 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~ 226 (960)
T 1wa5_C 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226 (960)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 9999876542 1 1 1 11112221 123554422 2442 111222222211 1 1 1
Q ss_pred cchhhHHHHHHHHhcccCC----C--h---hHHHHHHHHHHHHHHHHHhHhcc-CCcchHHHHHHHHhhhC-----CCCH
Q 000143 1250 DNVSLLFPIFENYLNKKAS----D--E---EKYDLVREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLN-----TPSE 1314 (2058)
Q Consensus 1250 ~~~~~Ll~~l~~~L~~~~~----~--~---e~~~~vR~~av~~Lg~La~~l~~-~~p~i~~iv~~Ll~~L~-----~~~~ 1314 (2058)
+++...++.|...+....+ + + .....+|..++.++..+++...+ -.|+++.+++.+++.+. ..++
T Consensus 227 ~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (960)
T 1wa5_C 227 DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306 (960)
T ss_dssp HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcH
Confidence 3456667777777654211 1 0 12235788889999988864332 23567777777776664 2345
Q ss_pred HHHHHHHHhhHhhHhhc------c--cchHHHH-HHHHHHHh----------------------cCCCHHHHHHHHHHHH
Q 000143 1315 AVQRAVSSCLSPLMQSM------Q--DEAPTLV-SRLLDQLM----------------------KSDKYGERRGAAFGLA 1363 (2058)
Q Consensus 1315 ~V~~av~~~L~~l~~~~------~--~~~~~~v-~~Ll~~L~----------------------~~~~~~vR~~Aa~~L~ 1363 (2058)
.+...+.+.+..++..- . +....++ ..++..+. .++.+..|++|..+|.
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 55555555544443211 1 1122333 22222221 1223568999999999
Q ss_pred HHHhhhCccccchhchHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHHHh-----c-c------cchhhHHHHHHHHH
Q 000143 1364 GVVKGFGISSLKKYGIAATLREGLAD-----RNSAKRREGALLAFECLCEKL-----G-R------LFEPYVIQMLPLLL 1426 (2058)
Q Consensus 1364 ~l~~~~g~~~l~~~~il~~L~~~l~~-----~~~~~~R~~al~al~~L~~~l-----g-~------~~~p~l~~llp~Ll 1426 (2058)
.++...|...++ .+++++.+.+.. ..+|+.|++|+.+++.++++. + . .+.+++.. .++
T Consensus 387 ~l~~~~~~~v~~--~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~---~v~ 461 (960)
T 1wa5_C 387 ELKEKNEVLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK---EIA 461 (960)
T ss_dssp HHHHHCHHHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH---HTH
T ss_pred HHHHHcchhHHH--HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHH---HhH
Confidence 999988743332 567777776651 348999999999999998642 1 1 34444332 233
Q ss_pred HHcCCC---CHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh-----------Chhh
Q 000143 1427 VAFSDQ---VVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC-----------APQQ 1492 (2058)
Q Consensus 1427 ~~l~D~---~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~-----------~p~~ 1492 (2058)
..+.|+ ++.||..|+++++++...+.++....++|.+++.+.+++.++|..|+.+|..+++. .+..
T Consensus 462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~ 541 (960)
T 1wa5_C 462 PDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKED 541 (960)
T ss_dssp HHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred HHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHH
Confidence 344555 89999999999999998887777789999999999999999999999999999873 2456
Q ss_pred HhhhhhhHHHHHHHHhcCCC---HH--HHHHHHHHHHHHHhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000143 1493 LSQCLPKIVPKLTEVLTDTH---PK--VQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2058)
Q Consensus 1493 l~~~L~~Iip~L~~~L~D~~---~~--VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2058)
+.+|++.+++.+..+++... +. ....+..+++.++...++ |++..+++.+...+
T Consensus 542 l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l------------------ 603 (960)
T 1wa5_C 542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIV------------------ 603 (960)
T ss_dssp TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHH------------------
T ss_pred hhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------------------
Confidence 89999999999999987641 11 346777888887776553 34444444443322
Q ss_pred ccccCChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHH
Q 000143 1565 FVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2058)
Q Consensus 1565 f~~~~~~~~l~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aL 1643 (2058)
....+ ..+...+..++++++.++.. ..+..+.++.+.++|.+...+.....+....+...+
T Consensus 604 -----------------~~~~~~~~~~~~~~~~~e~l~~l~~~-~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~ 665 (960)
T 1wa5_C 604 -----------------TIMAKNPSNPRFTHYTFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQII 665 (960)
T ss_dssp -----------------HHHTTSCCCHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred -----------------HHHHhCCCCcHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 11112 23455666678888888875 355677888999999999998877677888888888
Q ss_pred HHHHHhhc--ccCccchHHHHH--hhcccCCChHHHhhHHHHHHHHHHHhchhHH--HHhhHHHHHhhccCChhHHHHHH
Q 000143 1644 GSLIRGMG--EENFPDLVSWLL--DALKSDNSNVERSGAAQGLSEVLAALGTVYF--EHILPDIIRNCSHQRASVRDGYL 1717 (2058)
Q Consensus 1644 g~l~~~lg--~~~~~~llp~L~--~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l--~~llp~Ll~~l~~~~~~vR~~al 1717 (2058)
+.+..... .+++..++|.+. ..+... . .-......+..++...+.... +.++..+...+.+.. .+..++
T Consensus 666 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~a~ 740 (960)
T 1wa5_C 666 AFVVEQSATIPESIKPLAQPLLAPNVWELK-G--NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGF 740 (960)
T ss_dssp HHHHHHCSSCCTTTGGGHHHHTSGGGGCCT-T--THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHcCHHHhcCC-C--CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCc--ccchHH
Confidence 88887651 125667777776 555432 1 122334445444433332211 222322222233333 347889
Q ss_pred HHHHHhHHHhchh-HHHhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhc
Q 000143 1718 TLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYA 1769 (2058)
Q Consensus 1718 ~~l~~la~~~g~~-f~pyl~~ilp~Ll~~L~d~-~~~VR~~a~~al~~lv~~~~ 1769 (2058)
.+++.++..+|.+ |.||++.+++.++..+..+ .+..+...+..+..++..++
T Consensus 741 ~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 794 (960)
T 1wa5_C 741 DLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLG 794 (960)
T ss_dssp HHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcC
Confidence 9999999999988 9999999999999998765 45566555555555443443
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-19 Score=250.87 Aligned_cols=720 Identities=13% Similarity=0.120 Sum_probs=421.5
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcCCCC
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYDF 1128 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~~~~ 1128 (2058)
.++.+++..+.+||++.|..|.+.|++.... +....+...+ ...+.++.+|..|.. .|.....+.
T Consensus 7 ~~l~~~l~~~~~~d~~~r~~A~~~L~~~~~~-----p~~w~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~ 79 (971)
T 2x1g_F 7 ARLEEAVVSFYRSNSQNQAITHEWLTDAEAS-----PQAWQFSWQL--MQLGKSQEVQFFGAITLHSKLMKHWHEVPPEN 79 (971)
T ss_dssp ----CTHHHHHTSTTTC----CHHHHHTTTS-----THHHHHHHHH--TCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-----HHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHccHhhCCHHH
Confidence 3466677778889999999999999887511 2222233333 344567788877754 365544333
Q ss_pred CCCH-HhHHHHhcC---CCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHH
Q 000143 1129 GTDY-SGLFKALSH---SNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHS 1203 (2058)
Q Consensus 1129 ~~~~-~~ll~~l~~---~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~ 1203 (2058)
...+ ..+++.+.+ ....||+..+.+++.++.. +| .|++.+..+......... +. -++...+..+...+..
T Consensus 80 ~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~~~~~~---~~-~~~~~~~~~~l~iL~~ 154 (971)
T 2x1g_F 80 REELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTFQNQRM---PN-VSADVQLWIMLEVLTA 154 (971)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C------HHHHHHHHTC--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHHhcccc---cc-CCCHHHHHHHHHHHHH
Confidence 3344 667766643 2589999999999999865 56 888888888876542100 00 0112355666666666
Q ss_pred hhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCC--ChhHHHHHHHHHH
Q 000143 1204 AADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKAS--DEEKYDLVREGVV 1281 (2058)
Q Consensus 1204 l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~--~~e~~~~vR~~av 1281 (2058)
+++-+ . ...-.++...++.. + ..+++.+++++..++..... .++....++..++
T Consensus 155 l~EEi--------~----~~~~~~~r~~~~~~--------l----~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al 210 (971)
T 2x1g_F 155 IPEEA--------Q----VIHTSVKRVVLRAE--------I----AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAV 210 (971)
T ss_dssp HHHHH--------H----HCCCSSCHHHHHHH--------H----HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred hHHHH--------h----ccCcHHHHHHHHHH--------H----HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHH
Confidence 55311 0 00000111111111 1 13456677777776654211 1111225788899
Q ss_pred HHHHHHHhH--hccCCcchHHHHHHHHhhh----------------CCCCHHHHHHHHHhhHhhHhhcc-cc----hHHH
Q 000143 1282 IFTGALAKH--LAKDDPKVHAVVDKLLDVL----------------NTPSEAVQRAVSSCLSPLMQSMQ-DE----APTL 1338 (2058)
Q Consensus 1282 ~~Lg~La~~--l~~~~p~i~~iv~~Ll~~L----------------~~~~~~V~~av~~~L~~l~~~~~-~~----~~~~ 1338 (2058)
.+++....+ ++.. ....+++.++. | .++++.++.++.+|+..++.... .+ ...+
T Consensus 211 ~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l 287 (971)
T 2x1g_F 211 KCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVL 287 (971)
T ss_dssp HHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHH
T ss_pred HHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccHHHHHHH
Confidence 999887763 3322 34566666666 4 11456788889999998886421 11 2233
Q ss_pred HHHHHHH---Hh---cCCCH---HHHHHHHHHHHHHHhhhCcc-----------ccc-hhchHHHHHHHHhC----CCCH
Q 000143 1339 VSRLLDQ---LM---KSDKY---GERRGAAFGLAGVVKGFGIS-----------SLK-KYGIAATLREGLAD----RNSA 1393 (2058)
Q Consensus 1339 v~~Ll~~---L~---~~~~~---~vR~~Aa~~L~~l~~~~g~~-----------~l~-~~~il~~L~~~l~~----~~~~ 1393 (2058)
++.++.. +. ..++. ......+..+..+....... ... -..+++.+...... .++.
T Consensus 288 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~ 367 (971)
T 2x1g_F 288 IKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEE 367 (971)
T ss_dssp HHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTC
T ss_pred HHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcch
Confidence 3333321 11 22232 44445555555544321000 000 01445555555433 2366
Q ss_pred HHHHHHHHHHHHHHHHh------------cccchhhHHHHHHHHHHHcC---CC-----C-------HHHHHHHHHHHHH
Q 000143 1394 KRREGALLAFECLCEKL------------GRLFEPYVIQMLPLLLVAFS---DQ-----V-------VAVREAAECAARA 1446 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~l------------g~~~~p~l~~llp~Ll~~l~---D~-----~-------~~VR~aA~~al~~ 1446 (2058)
.++..++..+..+++.. ...+.|++.++++.++..+. |+ + ...|.++.+++..
T Consensus 368 ~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~ 447 (971)
T 2x1g_F 368 SCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMY 447 (971)
T ss_dssp TTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHH
Confidence 78888888888887632 12356788888888887763 11 1 1478888899988
Q ss_pred HHHhhhhhhHHhHHHHHHHhccC-----CChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh-cCCCHHHHHHHH
Q 000143 1447 MMSQLSAQGVKLVLPSLLKGLED-----KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL-TDTHPKVQSAGQ 1520 (2058)
Q Consensus 1447 l~~~l~~~~v~~llp~Ll~~L~~-----~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L-~D~~~~VR~aA~ 1520 (2058)
++..++...+..+++.+.+.+.. .+|+.|.+++.++|.+++++++...++++.+++.+..+. .|+++.||..++
T Consensus 448 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~ 527 (971)
T 2x1g_F 448 CYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTAL 527 (971)
T ss_dssp HHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHH
Confidence 88877755556777776666653 789999999999999999988777788888888444433 267999999999
Q ss_pred HHHHHHHhhcCc--hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHH
Q 000143 1521 TALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2058)
Q Consensus 1521 ~aL~~l~~~~~~--~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~ 1598 (2058)
++++++++.+.+ .++..+ +|.+..++ + +.++..|+.
T Consensus 528 ~~l~~~~~~l~~~~~~l~~v---------------------------------------l~~l~~~l-~--~~v~~~A~~ 565 (971)
T 2x1g_F 528 ETMGSYCNWLMENPAYIPPA---------------------------------------INLLVRGL-N--SSMSAQATL 565 (971)
T ss_dssp HHHHHTHHHHC----CHHHH---------------------------------------HHHHHHHH-H--SSCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHH---------------------------------------HHHHHHHh-C--hHHHHHHHH
Confidence 999999987652 123333 33333334 2 356778888
Q ss_pred HHHHHHhhhCCCCchhhhHhhhhHHHHHhhCC--CCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcc----c
Q 000143 1599 IVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALK----S 1668 (2058)
Q Consensus 1599 ~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d--~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~----~ 1668 (2058)
++.++++.. ...+.||++.++..+..++.. .+...+..+.+++|.++...+.+ ++..+++.+++.+. .
T Consensus 566 al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~ 643 (971)
T 2x1g_F 566 GLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643 (971)
T ss_dssp HHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888743 356889999999999999886 35789999999999999877632 55566666655443 2
Q ss_pred CC-ChHHHhh---HHHHHHHHHHHhch----------------hHHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHH
Q 000143 1669 DN-SNVERSG---AAQGLSEVLAALGT----------------VYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRS 1726 (2058)
Q Consensus 1669 d~-~~~~R~~---aa~~L~~i~~~~g~----------------~~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~ 1726 (2058)
.. +...+.. +...|+.++..++. .+.+.++|.+...+.+. +..+.+.++.+++.++.+
T Consensus 644 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 723 (971)
T 2x1g_F 644 DSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITN 723 (971)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHh
Confidence 21 2223333 33445555555542 13567888777766543 678999999999999999
Q ss_pred hchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHh
Q 000143 1727 LGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2058)
Q Consensus 1727 ~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~ 1806 (2058)
+|.+|.||++.+++.++..+..... ..++..++.++..++.+. .+.+.+. +++..+.
T Consensus 724 ~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~--~~~~~l~---------------~~~~~~~--- 780 (971)
T 2x1g_F 724 LRSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDE--GCKPLMQ---------------QLLREFI--- 780 (971)
T ss_dssp HHC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-------HHHH---------------HHHHHHH---
T ss_pred hhhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCc--chHHHHH---------------HHHHHHH---
Confidence 9999999999999999988876432 235566666665554420 0111111 1111110
Q ss_pred hCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHH--Hh-H
Q 000143 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--EI-M 1883 (2058)
Q Consensus 1807 ~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~--~~-l 1883 (2058)
..+...+.... ....+..+.+++.....+..++.+.|..+. +. +
T Consensus 781 ------------------------~~~~~~l~~~~---------~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l 827 (971)
T 2x1g_F 781 ------------------------QHSFKLFESTP---------EQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAY 827 (971)
T ss_dssp ------------------------HHHHHHHTSCT---------TTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCH
T ss_pred ------------------------HHHHHHHhccc---------ccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccH
Confidence 00011111000 000012356777788888888877775553 55 7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000143 1884 PVLMNTLISSLASSSSERRQVAGRALGELVRK 1915 (2058)
Q Consensus 1884 ~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~ 1915 (2058)
+.+++..+..+..++......+...+..++..
T Consensus 828 ~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 828 DRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp HHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 77788777777777766667777888777665
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-18 Score=240.17 Aligned_cols=714 Identities=14% Similarity=0.172 Sum_probs=438.0
Q ss_pred HHHHHHHhh-hcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcCCC
Q 000143 1057 NEVASALHG-VYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYD 1127 (2058)
Q Consensus 1057 ~~l~~ll~~-l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~~~ 1127 (2058)
.++.+++.. ..++|++.|..|.+.|++.... +....+...+ ...+.+..+|..|.. .|.....+
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~-----p~~~~~~~~l--L~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~ 96 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQVS-----PQAWHFSWQL--LQPDKVPEIQYFGASALHIKISRYWSDIPTD 96 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS-----TTHHHHHHHH--TSTTSCHHHHHHHHHHHHHHHHHCGGGSCGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHH--hcCCCchHHHHHHHHHHHHHHHhCHHhCCHH
Confidence 457777877 4458999999999999876411 1222233333 334567788877754 36554433
Q ss_pred CCCCH-HhHHHHhcC---CCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHH
Q 000143 1128 FGTDY-SGLFKALSH---SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALH 1202 (2058)
Q Consensus 1128 ~~~~~-~~ll~~l~~---~~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~ 1202 (2058)
....+ ..+++.+.+ ....||+..+.+++.++. .+|+.|++.+..|...... ..+. ..+...+..+...+.
T Consensus 97 ~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~----~~~~-~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 97 QYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQA----EDSP-VDGQGRCLALLELLT 171 (963)
T ss_dssp GHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhh----hccC-CCcHHHHHHHHHHHH
Confidence 33344 667776654 368999999999999986 4788888888888876421 0000 012234556666666
Q ss_pred HhhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHH
Q 000143 1203 SAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVI 1282 (2058)
Q Consensus 1203 ~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~ 1282 (2058)
.+++....... ...|+.. +...-..+++.+++.+..++.+...+ ..++..++.
T Consensus 172 ~l~ee~~~~~~----------------~~~~r~~-------~~~~l~~~~~~i~~ll~~~l~~~~~~----~~~~~~~l~ 224 (963)
T 2x19_B 172 VLPEEFQTSRL----------------PQYRKGL-------VRTSLAVECGAVFPLLEQLLQQPSSP----SCVRQKVLK 224 (963)
T ss_dssp HHHHHHTTCCC--------------------------------CCSGGGHHHHHHHHHHHHSCTTCC----HHHHHHHHH
T ss_pred hCHHHHhcccC----------------cHHHHHH-------HHHHHHHHHHHHHHHHHHHHhCCCCc----hHHHHHHHH
Confidence 65532211100 0111110 01111234667788888887653211 136777888
Q ss_pred HHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc-ccchHHHHHHHHHHHh----------cCCC
Q 000143 1283 FTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDEAPTLVSRLLDQLM----------KSDK 1351 (2058)
Q Consensus 1283 ~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~-~~~~~~~v~~Ll~~L~----------~~~~ 1351 (2058)
++..... +.........+++.+++.+.+ +.++..+.+|+..++... .......+..+++.+. ..++
T Consensus 225 ~l~~wi~-~~~~~~~~~~ll~~l~~~l~~--~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d 301 (963)
T 2x19_B 225 CFSSWVQ-LEVPLQDCEALIQAAFAALQD--SELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD 301 (963)
T ss_dssp HHHHHHT-SSCCGGGTHHHHHHHHHHTTS--TTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHHHc-CCCCcccchHHHHHHHHHhCC--chHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC
Confidence 8766554 222111126777888877754 457777888988887642 1122223333322211 1223
Q ss_pred HHHHHHHHHHHHHHHhhhCcccc------c-hhchHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHh----------
Q 000143 1352 YGERRGAAFGLAGVVKGFGISSL------K-KYGIAATLREGLAD----RNSAKRREGALLAFECLCEKL---------- 1410 (2058)
Q Consensus 1352 ~~vR~~Aa~~L~~l~~~~g~~~l------~-~~~il~~L~~~l~~----~~~~~~R~~al~al~~L~~~l---------- 1410 (2058)
....+..+..+..+......... . -..+++.+.+...+ ..++.++..++..+..+++..
T Consensus 302 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~ 381 (963)
T 2x19_B 302 METSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAV 381 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHH
Confidence 44444445555554432110000 0 01455556555554 224556777777777776632
Q ss_pred -cccchhhHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhc----cCC
Q 000143 1411 -GRLFEPYVIQMLPLLLVAFSDQV---------------VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL----EDK 1470 (2058)
Q Consensus 1411 -g~~~~p~l~~llp~Ll~~l~D~~---------------~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L----~~~ 1470 (2058)
...+.|++.++++.++..+..++ ...|.++.+++..+....+.+.+..+++.+.+.+ .+.
T Consensus 382 ~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~ 461 (963)
T 2x19_B 382 YQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPY 461 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhcCCCC
Confidence 13457888888888887664221 1347778888888887777666666777776666 667
Q ss_pred ChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhHHhHHHHHHhccCC
Q 000143 1471 AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTD 1548 (2058)
Q Consensus 1471 ~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i~~lvp~Ll~~l~d 1548 (2058)
+|+.|.+++.++|.+++++.+...++++.+++.+.. +.++++.||..++++++++++.+.+ +++..
T Consensus 462 ~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~----------- 529 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADTVMFTIGALSEWLADHPVMINS----------- 529 (963)
T ss_dssp CHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTT-----------
T ss_pred chHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHH-----------
Confidence 999999999999999998876666777788875443 4556899999999999999986541 22333
Q ss_pred CChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhh
Q 000143 1549 PNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2058)
Q Consensus 1549 ~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l 1628 (2058)
+++.+..++.+ +.++..|+.++.++++.. +..+.||++.++..+...+
T Consensus 530 ----------------------------vl~~l~~~l~~--~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l 577 (963)
T 2x19_B 530 ----------------------------VLPLVLHALGN--PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVL 577 (963)
T ss_dssp ----------------------------THHHHHHHTTC--GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHhCC--chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHh
Confidence 34444444443 467788888899988743 3568899999999999888
Q ss_pred CC--CCHHHHHHHHHHHHHHHHhhc-cc---CccchHHHHHhhcc----cCCChHHHh---hHHHHHHHHHHHhch----
Q 000143 1629 VD--PIPEVRSVAARAIGSLIRGMG-EE---NFPDLVSWLLDALK----SDNSNVERS---GAAQGLSEVLAALGT---- 1691 (2058)
Q Consensus 1629 ~d--~~~~vR~~a~~aLg~l~~~lg-~~---~~~~llp~L~~~L~----~d~~~~~R~---~aa~~L~~i~~~~g~---- 1691 (2058)
.. -....|..+.+++|.++...+ ++ |+..+++.+.+.+. +..+...+. ....+++.++++++.
T Consensus 578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~ 657 (963)
T 2x19_B 578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHE 657 (963)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC
T ss_pred ccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 74 357899999999999998776 32 56677776666553 222333333 456677788877762
Q ss_pred -----------------h----HHHHhhHHHHHhhcc--CChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccC
Q 000143 1692 -----------------V----YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2058)
Q Consensus 1692 -----------------~----~l~~llp~Ll~~l~~--~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d 1748 (2058)
+ .++.++|.+...+.. .+..+.+.++.+++.++..+|..|.||++.+++.++.....
T Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 737 (963)
T 2x19_B 658 DDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYST 737 (963)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHc
Confidence 1 346677766665543 36789999999999999999999999999988888776543
Q ss_pred -CCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchH
Q 000143 1749 -ENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTE 1827 (2058)
Q Consensus 1749 -~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e 1827 (2058)
+.+ ..+..+..++..++... .+.|.+. ..+..++
T Consensus 738 ~~~~----~~l~l~~~li~~f~~~~--~~~~~~~---------------~~l~~~~------------------------ 772 (963)
T 2x19_B 738 IPQA----SALDLTRQLVHIFAHEP--AHFPPIE---------------ALFLLVT------------------------ 772 (963)
T ss_dssp SCCH----HHHHHHHHHHHHHTTCT--TTCHHHH---------------HHHHHHH------------------------
T ss_pred CCcc----HHHHHHHHHHHHhCCCc--chHHHHH---------------HHHHHHH------------------------
Confidence 121 23333444444332210 0001000 0011110
Q ss_pred HHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHH--Hh-HHHHHHHHHHHhcCCCHHHHHH
Q 000143 1828 AHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK--EI-MPVLMNTLISSLASSSSERRQV 1904 (2058)
Q Consensus 1828 ~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~--~~-l~~L~~~l~~~L~~~~~~~R~~ 1904 (2058)
. .++.-+- ...+..+.+|+.....+..++.+.+..+- +. ++.+++.++..+..++.++...
T Consensus 773 ---~------------~~l~~~~-~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 836 (963)
T 2x19_B 773 ---S------------VTLTLFQ-QGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKA 836 (963)
T ss_dssp ---H------------HHHHHHH-HCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHH
T ss_pred ---H------------HHHHHHh-hCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHH
Confidence 0 0000000 01122467888888888888877765442 44 7778888888899999999999
Q ss_pred HHHHHHHHHHHhC
Q 000143 1905 AGRALGELVRKLG 1917 (2058)
Q Consensus 1905 A~~~Lg~L~~~lg 1917 (2058)
+...+.+++...+
T Consensus 837 ~l~~l~~l~~~~~ 849 (963)
T 2x19_B 837 SCGFFTELLPRCG 849 (963)
T ss_dssp HHHHHHHHGGGTT
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987654
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-18 Score=244.48 Aligned_cols=707 Identities=11% Similarity=0.105 Sum_probs=419.4
Q ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh-hC---
Q 000143 1134 GLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV-LR--- 1209 (2058)
Q Consensus 1134 ~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~-~~--- 1209 (2058)
.++....++|..+| |.+.|..+ +..|+.+..+++.+.+ . +.+-.+|..++..|++.... ..
T Consensus 9 ~~L~~~~spd~~~r--Ae~~L~~~-~~~p~~~~~L~~il~~-------~-----~~~~~vR~~A~i~lkn~i~~~w~~~~ 73 (960)
T 1wa5_C 9 KFLAESVIASTAKT--SERNLRQL-ETQDGFGLTLLHVIAS-------T-----NLPLSTRLAGALFFKNFIKRKWVDEN 73 (960)
T ss_dssp HHHHHTTSGGGHHH--HHHHHHHH-HTSTTHHHHHHHHHHC-------T-----TSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred HHHHHhcCCCHHHH--HHHHHHHh-hcCCCHHHHHHHHHhc-------C-----CCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 34444556677777 66666544 5566544433333321 0 12346788888888876543 21
Q ss_pred ------CCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHH
Q 000143 1210 ------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIF 1283 (2058)
Q Consensus 1210 ------~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~ 1283 (2058)
++....+-..++ .++.+....||..+..+...++....++.|+++++.+.+.+... + . ..+.+++.+
T Consensus 74 ~~~~l~~~~k~~ik~~ll-~~l~~~~~~ir~~l~~~ia~ia~~d~p~~Wp~ll~~L~~~l~s~--~--~--~~~~~aL~~ 146 (960)
T 1wa5_C 74 GNHLLPANNVELIKKEIV-PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSND--D--M--VTNKGVLTV 146 (960)
T ss_dssp SCBSSCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCCSS--C--T--THHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHhCCC--C--H--HHHHHHHHH
Confidence 111223444443 34444558899999888877777655678999999998887542 1 1 357889999
Q ss_pred HHHHHhHhcc--CC----cc----hHHHHHHHHh-------hhCCCCH---HHH------HHHHHhhHhhHhh-c----c
Q 000143 1284 TGALAKHLAK--DD----PK----VHAVVDKLLD-------VLNTPSE---AVQ------RAVSSCLSPLMQS-M----Q 1332 (2058)
Q Consensus 1284 Lg~La~~l~~--~~----p~----i~~iv~~Ll~-------~L~~~~~---~V~------~av~~~L~~l~~~-~----~ 1332 (2058)
+..+++.... .. +. +....+.+++ .+.++.. .++ ..+.+++..+... . .
T Consensus 147 l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~ 226 (960)
T 1wa5_C 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226 (960)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH
Confidence 9999976532 11 11 2223333322 2454422 122 2234444433211 1 1
Q ss_pred cchHHHHHHHHHHHhcC----------CC----HHHHHHHHHHHHHHHhhhCccccc-hhchHHHHHHHHhC----CCCH
Q 000143 1333 DEAPTLVSRLLDQLMKS----------DK----YGERRGAAFGLAGVVKGFGISSLK-KYGIAATLREGLAD----RNSA 1393 (2058)
Q Consensus 1333 ~~~~~~v~~Ll~~L~~~----------~~----~~vR~~Aa~~L~~l~~~~g~~~l~-~~~il~~L~~~l~~----~~~~ 1393 (2058)
+.+..+++.+++.+... ++ +.+|+.+..++..+....+....+ -..+++.+.+.+.+ ..+.
T Consensus 227 ~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (960)
T 1wa5_C 227 DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306 (960)
T ss_dssp HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcH
Confidence 12344454444444221 01 356788888998888765432211 01344444444431 3355
Q ss_pred HHHHHHHHHHHHHHHHh--cccch--hhHHHHH-HHHHHHcC-----------------------CCCHHHHHHHHHHHH
Q 000143 1394 KRREGALLAFECLCEKL--GRLFE--PYVIQML-PLLLVAFS-----------------------DQVVAVREAAECAAR 1445 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~l--g~~~~--p~l~~ll-p~Ll~~l~-----------------------D~~~~VR~aA~~al~ 1445 (2058)
..+..++..+..+++.- ...|. +++.+++ +.++..+. ++...+|.+|..+++
T Consensus 307 ~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~ 386 (960)
T 1wa5_C 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (960)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHH
Confidence 67777777777666421 23454 8888888 66666542 112368999999999
Q ss_pred HHHHhhhhhhHHhHHHHHHHhcc------CCChHHHHHHHHHHHHHHhhC--hh-hHhh-----hhhhH-HHHHHHHhcC
Q 000143 1446 AMMSQLSAQGVKLVLPSLLKGLE------DKAWRTKQSSVQLLGAMAYCA--PQ-QLSQ-----CLPKI-VPKLTEVLTD 1510 (2058)
Q Consensus 1446 ~l~~~l~~~~v~~llp~Ll~~L~------~~~~~~R~~a~~~Lg~la~~~--p~-~l~~-----~L~~I-ip~L~~~L~D 1510 (2058)
.++..++...++.+++.+.+.+. +.+|+.|.+|+.++|.++.+. .+ .... .+..+ ...+...++|
T Consensus 387 ~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~ 466 (960)
T 1wa5_C 387 ELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTS 466 (960)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHC
T ss_pred HHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcC
Confidence 99999886666777777777665 678999999999999998642 11 1111 22222 2334555677
Q ss_pred C---CHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcC
Q 000143 1511 T---HPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRE 1587 (2058)
Q Consensus 1511 ~---~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d 1587 (2058)
+ ++.||.+|+++++++++.+...++..+++.++ +.+.|
T Consensus 467 ~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~---------------------------------------~~L~d 507 (960)
T 1wa5_C 467 NNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILA---------------------------------------TFLQT 507 (960)
T ss_dssp SSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH---------------------------------------HHTTC
T ss_pred CCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHH---------------------------------------HHhCC
Confidence 7 99999999999999998764334444444444 44445
Q ss_pred CCHHHHHHHHHHHHHHHhhhC---------CCCchhhhHhhhhHHHHHhhCCCC---H--HHHHHHHHHHHHHHHhhccc
Q 000143 1588 RSAETKKKAAQIVGNMCSLVT---------EPKDMIPYIGLLLPEVKKVLVDPI---P--EVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1588 ~s~~vr~~A~~~l~~L~~~l~---------~~~~l~pyl~~ll~~L~~~l~d~~---~--~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
.+..||..|+.++.++++... ....+.||++.+++.|..++.... . .....+.++++.++..++++
T Consensus 508 ~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~ 587 (960)
T 1wa5_C 508 DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS 587 (960)
T ss_dssp SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT
T ss_pred CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 556778888888888887422 235688999999999999987641 1 13468899999999988876
Q ss_pred ---CccchHHHHHhhccc----CCChHHHhhHHHHHHHHHHHhchh----HHHHhhHHHHHhhccCChhHHHHHHHHHHH
Q 000143 1654 ---NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722 (2058)
Q Consensus 1654 ---~~~~llp~L~~~L~~----d~~~~~R~~aa~~L~~i~~~~g~~----~l~~llp~Ll~~l~~~~~~vR~~al~~l~~ 1722 (2058)
|++.+++.+...+.. ..+...+.....+++.++...+++ +.+.++|.+...+........+.++..+..
T Consensus 588 ~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~ 667 (960)
T 1wa5_C 588 IQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAF 667 (960)
T ss_dssp TGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 555666666665542 334455666788888888875554 446778877777776656677777777777
Q ss_pred hHHHhchhHHHhHHHHHHHHH--HhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHH
Q 000143 1723 LPRSLGVQFQNYLQQVLPAIL--DGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2058)
Q Consensus 1723 la~~~g~~f~pyl~~ilp~Ll--~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~ 1800 (2058)
+.... ..|.+|+..++|.+. ..+.... .+ ....+++..++...+.. ++. +
T Consensus 668 l~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~-~~~~~~L~~~~~~~~~~----~~~----------~----------- 719 (960)
T 1wa5_C 668 VVEQS-ATIPESIKPLAQPLLAPNVWELKG-NI-PAVTRLLKSFIKTDSSI----FPD----------L----------- 719 (960)
T ss_dssp HHHHC-SSCCTTTGGGHHHHTSGGGGCCTT-TH-HHHHHHHHHHHHHHGGG----CSC----------S-----------
T ss_pred HHHhc-cCCCHHHHHHHHHHcCHHHhcCCC-Cc-hhHHHHHHHHHHhChHH----HHH----------H-----------
Confidence 76655 556677777788777 5555432 11 12333333332222111 000 0
Q ss_pred HHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhh-H
Q 000143 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKT-L 1879 (2058)
Q Consensus 1801 ~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~-l 1879 (2058)
+ .++..+.....+.. .+..+..+++.++.+.+.. +
T Consensus 720 --------------------------~----------------~~l~~~~~~~~~~~--~~~~a~~ll~~i~~~~~~~~~ 755 (960)
T 1wa5_C 720 --------------------------V----------------PVLGIFQRLIASKA--YEVHGFDLLEHIMLLIDMNRL 755 (960)
T ss_dssp --------------------------H----------------HHHHHHHHHHTCTT--THHHHHHHHHHHHHHSCHHHH
T ss_pred --------------------------H----------------HHHHHHHHHhCCCc--ccchHHHHHHHHHHHCCHHHH
Confidence 0 00000000111111 1255667777888878877 8
Q ss_pred HHhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCcchh-------------h----chHHHHhhhcCCCChhHHH
Q 000143 1880 KEIMPVLMNTLISSLASS-SSERRQVAGRALGELVRKLGERVL-------------P----SIIPILSRGLKDPSASRRQ 1941 (2058)
Q Consensus 1880 ~~~l~~L~~~l~~~L~~~-~~~~R~~A~~~Lg~L~~~lg~~~l-------------~----~llp~L~~~l~d~~~~vR~ 1941 (2058)
.+|+|.+++.++..+..+ ..+.+......++.++-.+|...+ . ..+|.+.+. .....|.
T Consensus 756 ~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~---~~~~erk 832 (960)
T 1wa5_C 756 RPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTI---GNLLDRK 832 (960)
T ss_dssp GGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGC---CSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhc---cCHHHHH
Confidence 899999999999888765 455665666666666655554311 1 122222211 2356788
Q ss_pred HHHHHHHHHHHhhC--hhhhHhHHhhHHHHHHHHhcC
Q 000143 1942 GVCIGLSEVMASAG--KSQLLSFMDELIPTIRTALCD 1976 (2058)
Q Consensus 1942 ~a~~aL~eii~~~~--~~~l~~~~~~ll~~L~~~L~D 1976 (2058)
.++.++..++.... +..+.+....++..+...+..
T Consensus 833 ~~~~gl~~ll~~~~~~~~~~~~~~~~~~~~i~~l~~~ 869 (960)
T 1wa5_C 833 IALIGVLNMVINGQFFQSKYPTLISSTMNSIIETASS 869 (960)
T ss_dssp HHHHHHHHHHHSCHHHHHHCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhC
Confidence 88888988886541 333445567777777776643
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-19 Score=231.72 Aligned_cols=396 Identities=13% Similarity=0.156 Sum_probs=295.5
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh----
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV---- 1207 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~---- 1207 (2058)
..++..+.+++..+|+.|.+.|..+.+. .|+ ....|...+.. .+.+..+|..++..|+++...
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~~----~~~~L~~il~~--------~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVENLPT----FLVELSRVLAN--------PGNSQVARVAAGLQIKNSLTSKDPD 71 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHC--------TTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhChHH----HHHHHHHHHHc--------CCCChHHHHHHHHHHHHhccccchH
Confidence 4567777788999999999999886543 233 33333333221 123567999999999987521
Q ss_pred -----------hCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc-cchhhHHHHHHHHhcccCCChhHHHH
Q 000143 1208 -----------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR-DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2058)
Q Consensus 1208 -----------~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~-~~~~~Ll~~l~~~L~~~~~~~e~~~~ 1275 (2058)
++.+....+...++ ..+.+.++.+ ..+..+...+....++ ..|++++|.+...+.+. .. +..
T Consensus 72 ~~~~~~~~~~~l~~~~~~~ik~~ll-~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~-~~---~~~ 145 (462)
T 1ibr_B 72 IKAQYQQRWLAIDANARREVKNYVL-QTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNP-NS---TEH 145 (462)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCT-TC---CHH
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHH-HHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccC-CC---CHH
Confidence 22222334555554 5677777778 7777777666665444 47899999988887652 10 126
Q ss_pred HHHHHHHHHHHHHhHhcc--CCcchHHHHHHHHhhhCCC--CHHHHHHHHHhhHhhHhhcccc-----hHHHHHHHHHHH
Q 000143 1276 VREGVVIFTGALAKHLAK--DDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQL 1346 (2058)
Q Consensus 1276 vR~~av~~Lg~La~~l~~--~~p~i~~iv~~Ll~~L~~~--~~~V~~av~~~L~~l~~~~~~~-----~~~~v~~Ll~~L 1346 (2058)
+|+.++.+++.+++.+.. ..+++..+++.++..+.++ +..||..+.+|+..++....+. ...++-..+..+
T Consensus 146 ~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 146 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 899999999999986532 2467888999999999998 7999999999998866543221 223333333345
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCccccc-hh-chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--------------
Q 000143 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLK-KY-GIAATLREGLADRNSAKRREGALLAFECLCEKL-------------- 1410 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~-~~-~il~~L~~~l~~~~~~~~R~~al~al~~L~~~l-------------- 1410 (2058)
..++++.+|..++.++..++...+....+ .. .+++.+...+.+. +..+|..++..+..+++..
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 56667999999999999999876532111 12 6788877777776 8899999999999998753
Q ss_pred -------cccchhhHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHH
Q 000143 1411 -------GRLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476 (2058)
Q Consensus 1411 -------g~~~~p~l~~llp~Ll~~l~D-------~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~ 1476 (2058)
...+++|+..++|.++..+.+ ++..+|.+|..+++.++..++...++.++|.+.+.+.+.+|++|.
T Consensus 305 ~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~r~ 384 (462)
T 1ibr_B 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRD 384 (462)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHH
T ss_pred CCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCChHHHH
Confidence 123567888999999988853 346899999999999999988656688999999999999999999
Q ss_pred HHHHHHHHHHhhCh-hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-----hhHHhHHHHHHhccC
Q 000143 1477 SSVQLLGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGLT 1547 (2058)
Q Consensus 1477 ~a~~~Lg~la~~~p-~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~i~~lvp~Ll~~l~ 1547 (2058)
+++.++|.++.++. +.+.++++.++|.+...++|+++.||.+|+++|+++++.+++ ++++.++|.++..++
T Consensus 385 aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~~L~ 461 (462)
T 1ibr_B 385 AAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHCC--
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhc
Confidence 99999999998765 567888999999999999999999999999999999998764 567888888877653
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-18 Score=223.90 Aligned_cols=390 Identities=16% Similarity=0.239 Sum_probs=297.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCC--CCHHHHHHHHHHHHHHHHh-------------
Q 000143 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRG------------- 1649 (2058)
Q Consensus 1585 L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d--~~~~vR~~a~~aLg~l~~~------------- 1649 (2058)
+.+.+.++|+.|.+.+..+... + .+.....+...+.+ .++.+|..|+..|..+...
T Consensus 10 ~~s~d~~~r~~Ae~~L~~~~~~--~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 10 TVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHhh--C-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 4466788999999888876541 1 12233444444444 3689999999999988632
Q ss_pred --hcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh-HHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhH
Q 000143 1650 --MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLP 1724 (2058)
Q Consensus 1650 --lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~-~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la 1724 (2058)
++++....+-..+++.+.+++.. + ..++.+++.++...+++ ..++++|.+...+.++ ++.+|++++.+++.++
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~ 158 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 158 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 22333344666677777755444 5 78899999999887664 6688999999999988 8999999999999999
Q ss_pred HHh-chhHHHhHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHhccc----c-hhchHHhHhhhcCCCCHHHHHHHH
Q 000143 1725 RSL-GVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLVEHYATT----S-LPLLLPAVEDGIFNDNWRIRQSSV 1796 (2058)
Q Consensus 1725 ~~~-g~~f~pyl~~ilp~Ll~~L~d~--~~~VR~~a~~al~~lv~~~~~~----~-l~~llp~L~~~l~d~~~~vR~sav 1796 (2058)
... +..+.+|.+.+++.++..+.|+ ++.||..+++++..++..+... . .+.+++.+.+.+.+.++.+|..++
T Consensus 159 ~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~ 238 (462)
T 1ibr_B 159 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 238 (462)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 876 6667889999999999999998 7999999999998865432211 1 123577777778888999999999
Q ss_pred HHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC
Q 000143 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVANT 1875 (2058)
Q Consensus 1797 ~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~-~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~ 1875 (2058)
+.++.+....... ++ .+.. .+++.+.....|....||..++..|..++...
T Consensus 239 ~~l~~l~~~~~~~---------------------------~~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 239 QNLVKIMSLYYQY---------------------------ME-TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp HHHHHHHHHCGGG---------------------------CT-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------------------------HH-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 9999986432110 00 1111 33344444456778899999999998887542
Q ss_pred ---------------------hhhHHHhHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHhCcchhhchHHH
Q 000143 1876 ---------------------PKTLKEIMPVLMNTLISSLAS-------SSSERRQVAGRALGELVRKLGERVLPSIIPI 1927 (2058)
Q Consensus 1876 ---------------------~~~l~~~l~~L~~~l~~~L~~-------~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~ 1927 (2058)
...++.+++.+++.++..+.+ +++.+|..|..+++.++..+|+.+++.++|.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~ 370 (462)
T 1ibr_B 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPF 370 (462)
T ss_dssp HHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 123445667788877777643 3568999999999999999998888999999
Q ss_pred HhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh-----hhHH
Q 000143 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-----QAID 2002 (2058)
Q Consensus 1928 L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~-----~~~~ 2002 (2058)
+...++++++.+|.+++.+++.+....+++.+.++++.++|.+...+.|+++.||.+|+.+++.+....+. ++++
T Consensus 371 l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~ 450 (462)
T 1ibr_B 371 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLA 450 (462)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHH
Confidence 99999999999999999999999887765567788899999999999999999999999999999988765 4677
Q ss_pred HHHHHHHHhcC
Q 000143 2003 EIVPTLLHALE 2013 (2058)
Q Consensus 2003 ~ilp~Ll~~L~ 2013 (2058)
.++|.|+..|.
T Consensus 451 ~ll~~Ll~~L~ 461 (462)
T 1ibr_B 451 PLLQCLIEGLS 461 (462)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHHHhc
Confidence 88888887764
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-15 Score=213.84 Aligned_cols=789 Identities=10% Similarity=0.086 Sum_probs=443.6
Q ss_pred hcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhh
Q 000143 1052 LGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDR 1123 (2058)
Q Consensus 1052 ~~~~~~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~ 1123 (2058)
...+..++.+++..+.+|+.+.|..|.+.|++... . +....+...+. ..+.+..+|..|.. .|..
T Consensus 11 ~~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~--~---p~~~~~l~~iL--~~s~~~~vr~~aa~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 11 NDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQD--N---PDAWQKADQIL--QFSTNPQSKFIALSILDKLITRKWKL 83 (1049)
T ss_dssp SCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--S---TTGGGGHHHHH--HHCSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred CcccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHh--C---chHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHhhCcc
Confidence 33455678889999999999999999999987741 1 12233344442 33557788877754 3654
Q ss_pred cCCCCCCCH-HhHHHHhcCC---------CHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCch
Q 000143 1124 YGYDFGTDY-SGLFKALSHS---------NYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWL 1192 (2058)
Q Consensus 1124 ~~~~~~~~~-~~ll~~l~~~---------~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~ 1192 (2058)
.+.+....+ ..+++.+.+. +..+|+..+.+++.++.. +|+.|++.++.|.+... .+..
T Consensus 84 l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~-----------~~~~ 152 (1049)
T 3m1i_C 84 LPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS-----------SSVN 152 (1049)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHT-----------TCHH
T ss_pred CCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHc-----------cChH
Confidence 333323345 6677766532 478999999999999865 78889999998887642 1113
Q ss_pred hhHHHHHHHHHhhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhH
Q 000143 1193 GRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEK 1272 (2058)
Q Consensus 1193 ~R~~~~~al~~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~ 1272 (2058)
.+..+..+|..+++.+..- .-.+.... |..-++ ..+. .+++.+++.+...+.+. .
T Consensus 153 ~~~~~l~~L~~l~eev~~~------------~~~~~~~~-r~~~lk---~~l~----~~~~~i~~~~~~~l~~~-~---- 207 (1049)
T 3m1i_C 153 VCENNMIVLKLLSEEVFDF------------SAEQMTQA-KALHLK---NSMS----KEFEQIFKLCFQVLEQG-S---- 207 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTS------------CTTTSCHH-HHHHHH---HHHH----HHHHHHHHHHHHHHHHC-C----
T ss_pred HHHHHHHHHHHHHHHHHHh------------cchhhhhH-HHHHHH---HHHH----HHHHHHHHHHHHHHHhc-C----
Confidence 4666677776665432110 00011111 111111 1111 13556777777776652 1
Q ss_pred HHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc-ccc-------hHHHHHHHHH
Q 000143 1273 YDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM-QDE-------APTLVSRLLD 1344 (2058)
Q Consensus 1273 ~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~-~~~-------~~~~v~~Ll~ 1344 (2058)
...++..++.+++.....++.....-..+++.+++.+. .++.++.++.+|+..++... ++. +..+++.+++
T Consensus 208 ~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~ 286 (1049)
T 3m1i_C 208 SSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQ 286 (1049)
T ss_dssp CHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHH
Confidence 12578888888887665333110000123343442221 25788888999998887542 221 1222233343
Q ss_pred HHhc-----------------CCCHHHHHHHHHHHHHHHhhhC-----ccccch--hchHHHHHHHHhCCCCHHHHHHHH
Q 000143 1345 QLMK-----------------SDKYGERRGAAFGLAGVVKGFG-----ISSLKK--YGIAATLREGLADRNSAKRREGAL 1400 (2058)
Q Consensus 1345 ~L~~-----------------~~~~~vR~~Aa~~L~~l~~~~g-----~~~l~~--~~il~~L~~~l~~~~~~~~R~~al 1400 (2058)
.+.. +.+.......+..+..+..... ...... ..+++.+......+ +..++..++
T Consensus 287 ~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~-d~~v~~~~l 365 (1049)
T 3m1i_C 287 QIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERELFKTTL 365 (1049)
T ss_dssp HHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS-CHHHHHHHH
T ss_pred HHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC-cHHHHHHHH
Confidence 3211 2233334444444444433210 000111 13566666655555 778888888
Q ss_pred HHHHHHHHHh------cccchhhHHHHHHHHHHHcCCC-------------------C---HHHHHHHHHHHHHHHHhhh
Q 000143 1401 LAFECLCEKL------GRLFEPYVIQMLPLLLVAFSDQ-------------------V---VAVREAAECAARAMMSQLS 1452 (2058)
Q Consensus 1401 ~al~~L~~~l------g~~~~p~l~~llp~Ll~~l~D~-------------------~---~~VR~aA~~al~~l~~~l~ 1452 (2058)
..+..+++.+ ...+.+++.++++.++..+.-+ + ...|.++.+++..+....+
T Consensus 366 efw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~ 445 (1049)
T 3m1i_C 366 DYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV 445 (1049)
T ss_dssp HHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH
Confidence 8888888732 2457789999999988765211 1 1457788889998886655
Q ss_pred hhhHHhHHHHHHHhcc--CCChHHHHHHHHHHHHHHhhChhhHh-hhhhhHHHHHHHHhc-----CCCHHHHHHHHHHHH
Q 000143 1453 AQGVKLVLPSLLKGLE--DKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQ 1524 (2058)
Q Consensus 1453 ~~~v~~llp~Ll~~L~--~~~~~~R~~a~~~Lg~la~~~p~~l~-~~L~~Iip~L~~~L~-----D~~~~VR~aA~~aL~ 1524 (2058)
...+..+++.+-+.+. +.+|+.|.+++.++|.++.++..... .+++.+++.+..... |+++.||..++++++
T Consensus 446 ~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lg 525 (1049)
T 3m1i_C 446 IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVG 525 (1049)
T ss_dssp HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHH
Confidence 5555666777766665 46899999999999999987766543 458888888877542 567888888999999
Q ss_pred HHHhhcCc-h-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000143 1525 QVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2058)
Q Consensus 1525 ~l~~~~~~-~-~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~ 1602 (2058)
++++.+.+ + ++.. +++.+..++.+.++.++..||.++.+
T Consensus 526 ry~~~~~~~~~~l~~---------------------------------------vl~~ll~~l~~~~~~V~~~A~~al~~ 566 (1049)
T 3m1i_C 526 QYPRFLKAHWNFLRT---------------------------------------VILKLFEFMHETHEGVQDMACDTFIK 566 (1049)
T ss_dssp HCHHHHHHCHHHHHH---------------------------------------HHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHH---------------------------------------HHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99876532 1 2233 34444445555566777888888888
Q ss_pred HHhhhC------CCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcc-c----CccchHHHHHhhcccCCC
Q 000143 1603 MCSLVT------EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGE-E----NFPDLVSWLLDALKSDNS 1671 (2058)
Q Consensus 1603 L~~~l~------~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~-~----~~~~llp~L~~~L~~d~~ 1671 (2058)
+++... .+.++.||++.++..+..++.+...+-+....+|+|.++...|. + ++..+++.+.+.+.
T Consensus 567 l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~---- 642 (1049)
T 3m1i_C 567 IVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWD---- 642 (1049)
T ss_dssp HHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHH----
T ss_pred HHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH----
Confidence 776422 11233499999999999988887777778889999999987763 2 22222222222211
Q ss_pred hHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccC-Chh-HH--HHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhcc
Q 000143 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RAS-VR--DGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLA 1747 (2058)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~-~~~-vR--~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~ 1747 (2058)
.+. .....+..+. ++. ++ ...+.++..++..+|..|.|++..+++.++..+.
T Consensus 643 ------------~~~------------~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~ 698 (1049)
T 3m1i_C 643 ------------TIV------------EQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYR 698 (1049)
T ss_dssp ------------HHH------------HHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHH
T ss_pred ------------HHH------------HHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 111 0000000100 111 12 2346677888899999999998887776654332
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcccchh-chHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcch
Q 000143 1748 DENESVRDAALGAGHVLVEHYATTSLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2058)
Q Consensus 1748 d~~~~VR~~a~~al~~lv~~~~~~~l~-~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~ 1826 (2058)
.- ...+...+...+..... ..+..+. .+......++..+..+. + ..
T Consensus 699 ~~--------~~~~~~~~~~~g~~~~~~p~~~~~~--------~~~~~l~~ll~~~~~~~-------------~----~l 745 (1049)
T 3m1i_C 699 AV--------SSMISAQVAAEGLIATKTPKVRGLR--------TIKKEILKLVETYISKA-------------R----NL 745 (1049)
T ss_dssp HH--------HHHHHHHHHHHCGGGGGSHHHHHHH--------HHHHHHHHHHHHHHHHC-------------S----CH
T ss_pred HH--------HHHHHHHHHccCchhhhhHHHHHHH--------HHHHHHHHHHHHHHHhC-------------C----CH
Confidence 10 01111111111110000 0000000 01111111222211100 0 00
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHH-HHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH----hc---CCC
Q 000143 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVR-QAALHVWKTIVANTPKTLKEIMPVLMNTLISS----LA---SSS 1898 (2058)
Q Consensus 1827 e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR-~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~----L~---~~~ 1898 (2058)
+.... .+.+..+..++..........| ..++.+++.++...+..+.++++.+++.+..+ +. ++.
T Consensus 746 ~~~~~--------~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~ 817 (1049)
T 3m1i_C 746 DDVVK--------VLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEY 817 (1049)
T ss_dssp HHHHH--------HTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSS
T ss_pred HHHHH--------HHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhC
Confidence 11000 1111222222111100000000 23556666677666666667777777666654 32 467
Q ss_pred HHHHHHHHHHHHHHHHHhCcch-------hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh----hh----hHhHH
Q 000143 1899 SERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK----SQ----LLSFM 1963 (2058)
Q Consensus 1899 ~~~R~~A~~~Lg~L~~~lg~~~-------l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~----~~----l~~~~ 1963 (2058)
+++|......++.+++++...+ +..++.....+++.+++++...++..+.+++..... +. ...|.
T Consensus 818 pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~ 897 (1049)
T 3m1i_C 818 PEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYF 897 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 9999999999999998876543 334555666678888888888888888888876431 11 23455
Q ss_pred hhHHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Q 000143 1964 DELIPTIRTALCDSI-LEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1964 ~~ll~~L~~~L~D~d-~~VR~~Aa~a~~~l~ 1993 (2058)
..++..+...+.|.. ...-+.-+..+..+.
T Consensus 898 ~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~ 928 (1049)
T 3m1i_C 898 FIFVSETFFVLTDSDHKSGFSKQALLLMKLI 928 (1049)
T ss_dssp HHHHHHHHHHHHSTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHhhhHHHHHHHHHHHH
Confidence 566777777776654 222333334444443
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.1e-15 Score=197.52 Aligned_cols=513 Identities=11% Similarity=0.080 Sum_probs=356.6
Q ss_pred HHHHHHHHHhhHhhHhhcc-----cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC---ccccchhchHHHHHH
Q 000143 1314 EAVQRAVSSCLSPLMQSMQ-----DEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLRE 1385 (2058)
Q Consensus 1314 ~~V~~av~~~L~~l~~~~~-----~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g---~~~l~~~~il~~L~~ 1385 (2058)
+++|..++-|+..+...+. +.+.+.+...+.......+......|+.++..+..+.. ...+.....++.+..
T Consensus 218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~ 297 (810)
T 3now_A 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILA 297 (810)
T ss_dssp TTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHH
Confidence 4678888999998887764 44566677777766666777888889999999887542 222223478889999
Q ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh---------hhh
Q 000143 1386 GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---------AQG 1455 (2058)
Q Consensus 1386 ~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~-~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~---------~~~ 1455 (2058)
.+.++ +..+++.|+.+++.++... ....++. .-+|.|...+..+++.+|.-|..+|..+..... ...
T Consensus 298 Ll~s~-~~~~q~~A~~al~~aa~~~--~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~ 374 (810)
T 3now_A 298 MATTD-DELQQRVACECLIAASSKK--DKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGA 374 (810)
T ss_dssp HHHSS-CHHHHHHHHHHHHHHTTSH--HHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTH
T ss_pred HhCCC-CHHHHHHHHHHHHHHcCCc--HHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhcc
Confidence 88887 8889999999998876542 2233322 224888888988889999999999999874322 123
Q ss_pred HHhHHHHHHHhccCC--ChHHHHHHHHHHHHHHhhChhhHhhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1456 VKLVLPSLLKGLEDK--AWRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1456 v~~llp~Ll~~L~~~--~~~~R~~a~~~Lg~la~~~p~~l~~~-L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
+..+++.+.+.|.++ +..+|..|+++|..++........-. -...+|.|+.++...++.++..|.++|+.++.....
T Consensus 375 i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 577889999999877 88999999999999986543221111 147899999999988999999999999999874321
Q ss_pred h----hHHhHHHHHHhccCCCC-----hhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000143 1533 P----EIASLVPTLLMGLTDPN-----DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNM 1603 (2058)
Q Consensus 1533 ~----~i~~lvp~Ll~~l~d~~-----~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L 1603 (2058)
+ .+..+-...-....++. +.+++-+..+.. +-.+|.|...+...++.+|..|+.+++++
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve------------aGaVp~LV~LL~s~s~~vqe~Aa~aL~NL 522 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN------------EGITTALCALAKTESHNSQELIARVLNAV 522 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH------------TTHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH------------CcCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1 11111000000000001 111111122211 23689999999999999999999999999
Q ss_pred HhhhCCCCchhhhH--hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-Cc-----cchHHHHHhhcccCCChHHH
Q 000143 1604 CSLVTEPKDMIPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NF-----PDLVSWLLDALKSDNSNVER 1675 (2058)
Q Consensus 1604 ~~~l~~~~~l~pyl--~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-~~-----~~llp~L~~~L~~d~~~~~R 1675 (2058)
+. ++. ....+ ...+|.|..++.+..+.+|..|+.||+.++....++ .+ .+.+|.|++.|.++.....+
T Consensus 523 A~---d~~-~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~ 598 (810)
T 3now_A 523 CG---LKE-LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALEN 598 (810)
T ss_dssp HT---SHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHH
T ss_pred cC---CHH-HHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHH
Confidence 85 222 22222 357899999999999999999999999998654333 12 24789999999866555455
Q ss_pred hhHHHHHHHHHHHhch---hHH-HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCC
Q 000143 1676 SGAAQGLSEVLAALGT---VYF-EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADE 1749 (2058)
Q Consensus 1676 ~~aa~~L~~i~~~~g~---~~l-~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~ 1749 (2058)
..++.+|+.++..-.. ... ...+|.+...+.+.++.+|..++.++++++..-. ....+. ...+|.++..+..+
T Consensus 599 ~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~ 677 (810)
T 3now_A 599 FESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDE 677 (810)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCC
Confidence 6788888887753211 111 3568888888889999999999999999986322 223344 25899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhc---ccchh--chHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCc
Q 000143 1750 NESVRDAALGAGHVLVEHYA---TTSLP--LLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGA 1824 (2058)
Q Consensus 1750 ~~~VR~~a~~al~~lv~~~~---~~~l~--~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~ 1824 (2058)
+..+|..|+.++..+..... ...++ ..+|.|.+++.+.+..+|..++..+..+... +
T Consensus 678 d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-------------s----- 739 (810)
T 3now_A 678 DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-------------G----- 739 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-------------C-----
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-------------C-----
Confidence 99999999999998876322 11232 4789999999999999999999999998521 0
Q ss_pred chHHHHHHHHHHhChhhHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHHh
Q 000143 1825 STEAHGRAIIEVLGRDKRNEVLAALYMVRSD---VSLSVRQAALHVWKTIVA 1873 (2058)
Q Consensus 1825 ~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D---~~~~VR~aA~~~l~~lv~ 1873 (2058)
. .....+.+ ...++.|.....+ .+..+++.|.+.+..+..
T Consensus 740 -~-e~~~~l~e-------~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 740 -E-EIAKKLFE-------TDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp -H-HHHHHHHT-------STHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred -H-HHHHHHHH-------CCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 0 11111111 1244555555432 367889999988887764
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-15 Score=208.97 Aligned_cols=743 Identities=11% Similarity=0.043 Sum_probs=403.6
Q ss_pred chhhHHHHHHHHHhhhh----hCCCChHHHHHHHHH---hhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHh
Q 000143 1191 WLGRQGIALALHSAADV----LRTKDLPVIMTFLIS---RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYL 1263 (2058)
Q Consensus 1191 ~~~R~~~~~al~~l~~~----~~~~~~~~l~~~Li~---~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L 1263 (2058)
.++|..++..|++.... ++.++...+-..++. ..-+ ....||..+..+...++....+ .|+++++.+...+
T Consensus 54 ~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~-~~~~vr~kl~~~la~i~~~~~p-~Wp~~l~~l~~~~ 131 (971)
T 2x1g_F 54 QEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAG-GPKIVLNRLCISLGAYIVHMLG-EWPGAIEEVINTF 131 (971)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHHHHTTC-C------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHccc-cccHHHHHHHHHH
Confidence 35666666666665432 233333333333332 1112 2478999999988888877655 8888888877766
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHH
Q 000143 1264 NKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLL 1343 (2058)
Q Consensus 1264 ~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll 1343 (2058)
.....+.-.+...++.++..|..+++.+...++. .....++.... ..++..++.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~-------------~~r~~~~~~l~-----------~~~~~vl~ll~ 187 (971)
T 2x1g_F 132 QNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTS-------------VKRVVLRAEIA-----------KRVQLVIHTVE 187 (971)
T ss_dssp HHTC----CHHHHHHHHHHHHHHHHHHHHHCCCS-------------SCHHHHHHHHH-----------TTHHHHHHHHH
T ss_pred hccccccCCCHHHHHHHHHHHHHhHHHHhccCcH-------------HHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 4311110001246788899999888532211100 00001111011 11222222222
Q ss_pred HHHhcCC-------CHHHHHHHHHHHHHHHh--hhCccccchhchHHHHHHHHh---------------CCCCHHHHHHH
Q 000143 1344 DQLMKSD-------KYGERRGAAFGLAGVVK--GFGISSLKKYGIAATLREGLA---------------DRNSAKRREGA 1399 (2058)
Q Consensus 1344 ~~L~~~~-------~~~vR~~Aa~~L~~l~~--~~g~~~l~~~~il~~L~~~l~---------------~~~~~~~R~~a 1399 (2058)
+.+.... .+.++..+..|+...+. ..+.. ....+++.+.. +. ...++..|+.|
T Consensus 188 ~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a 264 (971)
T 2x1g_F 188 RYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESC 264 (971)
T ss_dssp HHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHH
T ss_pred HHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHH
Confidence 2221111 13688899999988877 34333 23467777666 41 11256789999
Q ss_pred HHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCCh---HHH
Q 000143 1400 LLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAW---RTK 1475 (2058)
Q Consensus 1400 l~al~~L~~~lg-~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~---~~R 1475 (2058)
+.++..+..... ..+.+++..++|.++... +.+...+.+.+. ...
T Consensus 265 ~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~-------------------------------~~~~~~~~~~d~~~~~~~ 313 (971)
T 2x1g_F 265 LKTMVNIIIQPDCHNYPKTAFVLIKMFLDSL-------------------------------SEITKTEWKRENDNEDII 313 (971)
T ss_dssp HHHHHHHHHCSGGGGCHHHHHHHHHHHHHHH-------------------------------HHHHHHHSSSSCSCSHHH
T ss_pred HHHHHHHHcCccccccHHHHHHHHHHHHHhH-------------------------------HHHHHHHhcccccchHHH
Confidence 999988876422 223344555555444211 000001111110 112
Q ss_pred HHHHHHHHHHHhhChhh-----------HhhhhhhHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhhc-C-------
Q 000143 1476 QSSVQLLGAMAYCAPQQ-----------LSQCLPKIVPKLTEVLTD-----THPKVQSAGQTALQQVGSVI-K------- 1531 (2058)
Q Consensus 1476 ~~a~~~Lg~la~~~p~~-----------l~~~L~~Iip~L~~~L~D-----~~~~VR~aA~~aL~~l~~~~-~------- 1531 (2058)
...++.+..++...+.. ..+++..+++.++.+... .+..|+..+++.+..+++.. .
T Consensus 314 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~ 393 (971)
T 2x1g_F 314 VHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQK 393 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccch
Confidence 22233333333222221 224566777777776533 46789999999988887622 1
Q ss_pred -------chhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000143 1532 -------NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2058)
Q Consensus 1532 -------~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~ 1604 (2058)
.+.+..+++.++..+.-|++.. +.. .+... .+.....|+.+.+++..++
T Consensus 394 ~~~~~~~~~~~~~ll~~l~~~~~~p~~~~-----------~~~-~d~~e------------~~~f~~~R~~~~~~l~~~~ 449 (971)
T 2x1g_F 394 HKCWEYIKPLYAHLTRILVRKSEQPDEKS-----------LAK-WSSDD------------LECFRCYRQDISDTFMYCY 449 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCCTTT-----------TSC-SCHHH------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccc-----------ccc-cCHhH------------HHHHHHHHHHHHHHHHHHH
Confidence 1233444555544443222100 000 00000 0001246777888888887
Q ss_pred hhhCCCCchhhhHhhhhHHHHHhhCC-----CCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcc-cCCChHHH
Q 000143 1605 SLVTEPKDMIPYIGLLLPEVKKVLVD-----PIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALK-SDNSNVER 1675 (2058)
Q Consensus 1605 ~~l~~~~~l~pyl~~ll~~L~~~l~d-----~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~-~d~~~~~R 1675 (2058)
..++ + ..++.+++.+...+.. ++|..|+++..++|++++.+.+. +++.+++ ++..+. +|....+|
T Consensus 450 ~~~~--~---~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~-~l~~l~~~d~~~~vr 523 (971)
T 2x1g_F 450 DVLN--D---YILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMR-VLAEIPYEKLNVKLL 523 (971)
T ss_dssp TTCT--T---HHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHH-HHHHSCTTTSCHHHH
T ss_pred HHHh--H---HHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHH-HHHhcCccccCHHHH
Confidence 7543 2 2344455555555443 78999999999999999877653 3455666 333344 24567799
Q ss_pred hhHHHHHHHHHHHhch--hHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccC--CCH
Q 000143 1676 SGAAQGLSEVLAALGT--VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD--ENE 1751 (2058)
Q Consensus 1676 ~~aa~~L~~i~~~~g~--~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d--~~~ 1751 (2058)
..++++++.+...++. +++..+++.++..+ + +.|+..++.++..+++..+..+.||++.++..+...+.. -..
T Consensus 524 ~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~ 600 (971)
T 2x1g_F 524 GTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKN 600 (971)
T ss_dssp HHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCCh
Confidence 9999999999988874 47888999999888 4 789999999999999999999999999999999999887 357
Q ss_pred HHHHHHHHHHHHHHHHhccc----chhchHHhHh----hhcCCC--CHHHHHHHHHHHHHH---HHHhhCCcccccccCC
Q 000143 1752 SVRDAALGAGHVLVEHYATT----SLPLLLPAVE----DGIFND--NWRIRQSSVELLGDL---LFKVAGTSGKALLEGG 1818 (2058)
Q Consensus 1752 ~VR~~a~~al~~lv~~~~~~----~l~~llp~L~----~~l~d~--~~~vR~sav~ll~~L---l~~~~g~~~k~~~~~~ 1818 (2058)
..+..+++++..++...+.. .+..+++.+. ..+... +..-+...+..++.+ +..+.+... .
T Consensus 601 ~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~------~ 674 (971)
T 2x1g_F 601 SDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVD------E 674 (971)
T ss_dssp HHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcC------c
Confidence 88999999999988765422 2223333333 333322 232333333444333 222111000 0
Q ss_pred CCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhh--cCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcC
Q 000143 1819 SDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVR--SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS 1896 (2058)
Q Consensus 1819 ~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~--~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~ 1896 (2058)
...+.+..+. -....+.+++.+.... ...+..+.+.+..+|+.++...+..+.+++|.+++.++..+..
T Consensus 675 ~~~~~~~~~~---------~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~ 745 (971)
T 2x1g_F 675 QATDQPIVQP---------VLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQT 745 (971)
T ss_dssp ---------C---------CHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-
T ss_pred ccccccCCCc---------hHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhc
Confidence 0000000000 0011222333222221 2235678888899999988877878888999999999888776
Q ss_pred CCHHHHHHHHHHHHHHHHHhCcc-----hhhch----HHHHhhhcCC-------CChhHHHHHHHHHHHHHHhhChhhh-
Q 000143 1897 SSSERRQVAGRALGELVRKLGER-----VLPSI----IPILSRGLKD-------PSASRRQGVCIGLSEVMASAGKSQL- 1959 (2058)
Q Consensus 1897 ~~~~~R~~A~~~Lg~L~~~lg~~-----~l~~l----lp~L~~~l~d-------~~~~vR~~a~~aL~eii~~~~~~~l- 1959 (2058)
... ..+...++.++..+|.+ .+.++ ...+...++. .+++++......++.++......-+
T Consensus 746 ~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~ 822 (971)
T 2x1g_F 746 RCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLED 822 (971)
T ss_dssp -CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGC
T ss_pred CCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcC
Confidence 433 45788999999988863 12222 2222233332 3678888887778888876643222
Q ss_pred HhH-HhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-hhhHHH----HHH----HHHHhcCC---CcchHHHHHHHH
Q 000143 1960 LSF-MDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG-MQAIDE----IVP----TLLHALED---DQTSDTALDGLK 2026 (2058)
Q Consensus 1960 ~~~-~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g-~~~~~~----ilp----~Ll~~L~~---~~~~~~al~aL~ 2026 (2058)
.+. ++.+++.....+.-+++.+..++...+..+....+ ...+.+ ..+ .++..+.+ ...-+++...|+
T Consensus 823 s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~ 902 (971)
T 2x1g_F 823 KTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILL 902 (971)
T ss_dssp TTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHH
T ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHH
Confidence 145 67788888877776777777778777777665532 122222 222 33332221 122244555666
Q ss_pred HHHhhcCCccchhhhhhh
Q 000143 2027 QILSVRTTAVLPHILPKL 2044 (2058)
Q Consensus 2027 ~i~~~~~~~~lp~lip~L 2044 (2058)
.+...++....+++-..|
T Consensus 903 ~l~~~~~~~~~~~l~~~l 920 (971)
T 2x1g_F 903 AMNRKYAAEMAVWMKSLM 920 (971)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCcHHHHHHHHHHh
Confidence 666666655555544333
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-13 Score=193.73 Aligned_cols=766 Identities=12% Similarity=0.046 Sum_probs=443.5
Q ss_pred HhHHHH-hcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh----
Q 000143 1133 SGLFKA-LSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV---- 1207 (2058)
Q Consensus 1133 ~~ll~~-l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~---- 1207 (2058)
..++.. ..++++..|+.|.+.|.. .+..|+.|.-.+.-|. . +.+..+|..++..|++....
T Consensus 27 ~~~l~~l~~~~~~~~r~~A~~~L~~-~~~~p~~~~~~~~lL~--------~-----~~~~~vr~~aa~~L~~~i~~~w~~ 92 (963)
T 2x19_B 27 EKALHQLYYDPNIENKNLAQKWLMQ-AQVSPQAWHFSWQLLQ--------P-----DKVPEIQYFGASALHIKISRYWSD 92 (963)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHH-HHHSTTHHHHHHHHTS--------T-----TSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH-HhcCHHHHHHHHHHhc--------C-----CCchHHHHHHHHHHHHHHHhCHHh
Confidence 444554 445788999998888866 4556776664333221 0 23457899999999987643
Q ss_pred hCCCChHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q 000143 1208 LRTKDLPVIMTFLISRAL--ADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTG 1285 (2058)
Q Consensus 1208 ~~~~~~~~l~~~Li~~~L--~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg 1285 (2058)
++.++...+-..++.... .+....||..+..+...++....++.|+++++.+...+.. ..+...+...++.++.+|.
T Consensus 93 l~~~~~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~-~~~~~~~~~~~~~~l~iL~ 171 (963)
T 2x19_B 93 IPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQA-EDSPVDGQGRCLALLELLT 171 (963)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC-------CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhh-hccCCCcHHHHHHHHHHHH
Confidence 344444444444442111 1235889999999888888776667799999988877653 1110001245788899999
Q ss_pred HHHhHhccC--------------CcchHHHHHHHHhhhCCCC--HHHHHHHHHhhHhhHhhcccch---HHHHHHHHHHH
Q 000143 1286 ALAKHLAKD--------------DPKVHAVVDKLLDVLNTPS--EAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQL 1346 (2058)
Q Consensus 1286 ~La~~l~~~--------------~p~i~~iv~~Ll~~L~~~~--~~V~~av~~~L~~l~~~~~~~~---~~~v~~Ll~~L 1346 (2058)
.+++.+... ...++.+++.+...+.+.+ ..+...+.+|+...+. .+... ..+++.+++.+
T Consensus 172 ~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l 250 (963)
T 2x19_B 172 VLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAAL 250 (963)
T ss_dssp HHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHT
T ss_pred hCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHh
Confidence 998643111 1235666666666665543 2477778888877765 33222 66777777665
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCccccch--hchHHHHHH-------HHhCCCCHHHHHHHHHHHHHHHHHhcccc---
Q 000143 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGIAATLRE-------GLADRNSAKRREGALLAFECLCEKLGRLF--- 1414 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~--~~il~~L~~-------~l~~~~~~~~R~~al~al~~L~~~lg~~~--- 1414 (2058)
. ++..|..|..++..++.......... ..+++.+.. .+.+. |..........+..+++.....+
T Consensus 251 ~---~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-d~~~~~~~~~l~~~~~~~~~~~l~~~ 326 (963)
T 2x19_B 251 Q---DSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNG-DMETSHGICRIAVALGENHSRALLDQ 326 (963)
T ss_dssp T---STTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred C---CchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 2 46789999999999987543221110 022222221 22333 33333444455555554322222
Q ss_pred ---hhhHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 000143 1415 ---EPYVIQMLPLLLVAFSD-----QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1415 ---~p~l~~llp~Ll~~l~D-----~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la 1486 (2058)
.+++..++..++....+ .++.++..+..-+..++..... + ....+.
T Consensus 327 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~-------------~---~~~~~~---------- 380 (963)
T 2x19_B 327 VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILS-------------F---EAEKQA---------- 380 (963)
T ss_dssp GGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTT-------------S---CHHHHH----------
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHh-------------h---hhhhhH----------
Confidence 24555666666666553 3445555555544444331100 0 000000
Q ss_pred hhChhhHhhhhhhHHHHHHHHhcCCCH---------------HHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCCh
Q 000143 1487 YCAPQQLSQCLPKIVPKLTEVLTDTHP---------------KVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551 (2058)
Q Consensus 1487 ~~~p~~l~~~L~~Iip~L~~~L~D~~~---------------~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~ 1551 (2058)
.....+.++++.+++.++..+..+.. ..|.++..+|..++...++
T Consensus 381 -~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~------------------- 440 (963)
T 2x19_B 381 -VYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA------------------- 440 (963)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH-------------------
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH-------------------
Confidence 00112234444555555444432211 1233333333333322221
Q ss_pred hHHHHHHHHHhccccccCChhhHhhHHHHHHHhh----cCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHh
Q 000143 1552 HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGL----RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKV 1627 (2058)
Q Consensus 1552 ~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L----~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~ 1627 (2058)
..+..+++.+...+ .+.+|..+..++.++|.+++.+.+ +..++++.+++.+..
T Consensus 441 --------------------~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~--~~~~~l~~l~~~l~~- 497 (963)
T 2x19_B 441 --------------------ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV--NYSDVVPGLIGLIPR- 497 (963)
T ss_dssp --------------------HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS--SCCSHHHHHHHHGGG-
T ss_pred --------------------HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc--hhhHHHHHHHHHHHh-
Confidence 12233344444444 456799999999999999886433 335677777775443
Q ss_pred hCCCCHHHHHHHHHHHHHHHHhhcc--cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHH
Q 000143 1628 LVDPIPEVRSVAARAIGSLIRGMGE--ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDII 1702 (2058)
Q Consensus 1628 l~d~~~~vR~~a~~aLg~l~~~lg~--~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll 1702 (2058)
+.++++.+|..++.++|.+++-++. ++++.+++.++..|.+ ..++..++.++..++..++.. +++.++..+.
T Consensus 498 l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~ 574 (963)
T 2x19_B 498 ISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN---PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQ 574 (963)
T ss_dssp SCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3446889999999999999987664 4788999999999863 568899999999999888764 6677777777
Q ss_pred Hhhcc--CChhHHHHHHHHHHHhHHHhc-hhHHHhHHHHHHHHHHhcc-----CCCHHHHHH---HHHHHHHHHHHhccc
Q 000143 1703 RNCSH--QRASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDGLA-----DENESVRDA---ALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1703 ~~l~~--~~~~vR~~al~~l~~la~~~g-~~f~pyl~~ilp~Ll~~L~-----d~~~~VR~~---a~~al~~lv~~~~~~ 1771 (2058)
..+.+ .+...|..++.+++.++...+ ..+.+|+..+++++...+. ..+++.+.. .++++..++..++..
T Consensus 575 ~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~ 654 (963)
T 2x19_B 575 DVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDIS 654 (963)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77665 367899999999999998887 7899999999999987663 123333332 223333333222211
Q ss_pred chhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHH-
Q 000143 1772 SLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY- 1850 (2058)
Q Consensus 1772 ~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~- 1850 (2058)
. +. ...+.. ... ...++... +.. . ...+.+++.+.
T Consensus 655 ~-----~~---~~~~~~------------~~~-------------~~~~~~~~--~~~----~-----~~~~~~~~~~~~ 690 (963)
T 2x19_B 655 H-----HE---DDHEGP------------ELR-------------KLPVPQGP--NPV----V-----VVLQQVFQLIQK 690 (963)
T ss_dssp C-----CC-------------------------------------------CC--CHH----H-----HHHHHHHHHHHH
T ss_pred c-----cc---cccccc------------ccc-------------cCCCCCCC--Cch----H-----HHHHHHHHHHHH
Confidence 0 00 000000 000 00000000 000 0 01112222221
Q ss_pred --HhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc-----hhhc
Q 000143 1851 --MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGER-----VLPS 1923 (2058)
Q Consensus 1851 --~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~-----~l~~ 1923 (2058)
.... .+..+.+.+..+++.++...+..+.+++|.+++.+........ -......++.++...|.. .++.
T Consensus 691 ~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~---~~~~l~l~~~li~~f~~~~~~~~~~~~ 766 (963)
T 2x19_B 691 VLSKWL-NDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP---QASALDLTRQLVHIFAHEPAHFPPIEA 766 (963)
T ss_dssp HHHHHT-TCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC---CHHHHHHHHHHHHHHTTCTTTCHHHHH
T ss_pred HHHhcc-CchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC---ccHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 1112 2357788888899998888888888889988888776554321 123556677777744322 2222
Q ss_pred hHHH----HhhhcC---CCChhHHHHHHHHHHHHHHhhChhhh-HhH-HhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1924 IIPI----LSRGLK---DPSASRRQGVCIGLSEVMASAGKSQL-LSF-MDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2058)
Q Consensus 1924 llp~----L~~~l~---d~~~~vR~~a~~aL~eii~~~~~~~l-~~~-~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~ 1994 (2058)
++.. +...++ ++.+++|......++.++..+....+ .+. +..+++.+...+...++++..++...+..+..
T Consensus 767 ~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~ 846 (963)
T 2x19_B 767 LFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLP 846 (963)
T ss_dssp HHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3222 222222 24689999999889999887754433 233 67888888889999999999999999999886
Q ss_pred HhC-h--------hhHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhhcCCccch
Q 000143 1995 SAG-M--------QAIDEIVPTLLHALEDDQ---TSDTALDGLKQILSVRTTAVLP 2038 (2058)
Q Consensus 1995 ~~g-~--------~~~~~ilp~Ll~~L~~~~---~~~~al~aL~~i~~~~~~~~lp 2038 (2058)
..+ . .+...++..++..+.+.. .-+.....|..++..++.....
T Consensus 847 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l~~~~~~~~~~ 902 (963)
T 2x19_B 847 RCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFALNKHCFSLLSM 902 (963)
T ss_dssp GTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHSHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHHHChHHHHH
Confidence 654 1 234456666666666422 2234444455565555443333
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-15 Score=203.23 Aligned_cols=473 Identities=13% Similarity=0.145 Sum_probs=331.9
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHh
Q 000143 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~ 1458 (2058)
..+.+.+.+.++ +...|+.+..++..+++... .....+++.+.+.++|+++.+|..|..+++.+. .++..+.
T Consensus 50 ~~~~vi~l~~s~-~~~~Krl~yl~l~~~~~~~~----e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~ 121 (591)
T 2vgl_B 50 LFPDVVNCMQTD-NLELKKLVYLYLMNYAKSQP----DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEY 121 (591)
T ss_dssp GHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHSH----HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHcccCc----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHH
Confidence 445555666665 78888888887877766422 223345677778899999999999887776653 4455678
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch----h
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP----E 1534 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~----~ 1534 (2058)
++|.+.+.+.|+++.+|+.|+.+++.+....|+.+.. ..++|.+.++++|+++.|+.+|+.+|+.++..-.+. .
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l 199 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL 199 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc
Confidence 8899999999999999999999999999877765433 368899999999999999999999999998754322 1
Q ss_pred HHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh-CCCCc
Q 000143 1535 IASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV-TEPKD 1612 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l-~~~~~ 1612 (2058)
....++.++..+.+.++..+ ..++.+.. +. ..+.+....+++.+...+++.++.++..|+.++..+...+ .+++.
T Consensus 200 ~~~~~~~Ll~~l~~~~~~~q~~il~~l~~--l~-~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~ 276 (591)
T 2vgl_B 200 NPQNINKLLTALNECTEWGQIFILDCLSN--YN-PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDY 276 (591)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHT--SC-CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBS
T ss_pred cHHHHHHHHHcCCCCCchHHHHHHHHHHH--hC-CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHH
Confidence 23455666666666665554 45555543 22 2233445678888888899999999999999999876533 23334
Q ss_pred hhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh
Q 000143 1613 MIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV 1692 (2058)
Q Consensus 1613 l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~ 1692 (2058)
+....+.+.+.|..++ ++++++|..+.++++.++...+ +.+...+..++ .+.+|+ ..+|..++..+..++ ..+
T Consensus 277 ~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p-~~~~~~~~~~~-~~~~d~-~~Ir~~al~~L~~l~---~~~ 349 (591)
T 2vgl_B 277 YNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRP-EILKQEIKVFF-VKYNDP-IYVKLEKLDIMIRLA---SQA 349 (591)
T ss_dssp HHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCC-STTTTCTTTTS-CCTTSC-HHHHHHHHHHHHHTC---CSS
T ss_pred HHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhCh-HHHHHHHHhhe-eccCCh-HHHHHHHHHHHHHHC---Chh
Confidence 4445566777777655 5889999999999999987643 32322222221 222344 668888887776654 233
Q ss_pred HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccc
Q 000143 1693 YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS 1772 (2058)
Q Consensus 1693 ~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~ 1772 (2058)
..+.+++.+...+.+.++.+|..++..++.++..++ +....+++.++..+.+....++..+..+++.++..+...
T Consensus 350 nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~----~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~- 424 (591)
T 2vgl_B 350 NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVE----QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK- 424 (591)
T ss_dssp THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCh----hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-
Confidence 467889999999999999999999999999887654 345667788888899999999999999999988776542
Q ss_pred hhchHHhHhhhcCC-CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHH
Q 000143 1773 LPLLLPAVEDGIFN-DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYM 1851 (2058)
Q Consensus 1773 l~~llp~L~~~l~d-~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~ 1851 (2058)
...+++.|.+.+.+ ....+|.+++.++|+.... ..+ ...++..++.
T Consensus 425 ~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~------------~~~---------------------~~~~l~~l~~ 471 (591)
T 2vgl_B 425 YESIIATLCENLDSLDEPDARAAMIWIVGEYAER------------IDN---------------------ADELLESFLE 471 (591)
T ss_dssp CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTT------------CTT---------------------HHHHHHHHST
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHccccc------------ccC---------------------HHHHHHHHHH
Confidence 23466777777753 5678899998888875210 000 1134445555
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 000143 1852 VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA-SSSSERRQVAGRALGEL 1912 (2058)
Q Consensus 1852 ~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~-~~~~~~R~~A~~~Lg~L 1912 (2058)
...+.+..||..++..+..+....|....+.+..++.. +.. +.+.++|.-|.+.++-+
T Consensus 472 ~~~~~~~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~---~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 472 GFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSL---ATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHH---HHTTCCCHHHHHHHHHHHTTT
T ss_pred hhccCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH---hhhcCCChHHHHHHHHHHHHH
Confidence 55677789999998888888776664433333333332 234 47889999888776544
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-14 Score=191.45 Aligned_cols=658 Identities=12% Similarity=0.104 Sum_probs=432.6
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHh-hhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000143 1337 TLVSRLLDQLMK-SDKYGERRGAAFGLAGVVK-GFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2058)
Q Consensus 1337 ~~v~~Ll~~L~~-~~~~~vR~~Aa~~L~~l~~-~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~ 1414 (2058)
.-+..+++.+++ +.+-+.|+.|+.-|-.+++ .-|.+.+-+.+-+..+.+.+++.+++...-+|+.++..+|++-....
T Consensus 6 ~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~ 85 (810)
T 3now_A 6 TKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERT 85 (810)
T ss_dssp HHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHH
Confidence 346667776664 3456678888887777765 33444444446677788888876789999999999998887643222
Q ss_pred hhhHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh------------------hhHHhHHHHHHHhccCC--ChH
Q 000143 1415 EPYVIQ-MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA------------------QGVKLVLPSLLKGLEDK--AWR 1473 (2058)
Q Consensus 1415 ~p~l~~-llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~------------------~~v~~llp~Ll~~L~~~--~~~ 1473 (2058)
...+.. =+|.+...+.-+++.+-.++..++..+...+++ ..++.++..++..+.+. .-.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 165 (810)
T 3now_A 86 KGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGA 165 (810)
T ss_dssp HHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHH
T ss_pred HHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChh
Confidence 222211 135566667777888888898999888877653 12366777788888775 467
Q ss_pred HHHHHHHHHHHHHhhC----hhhHhhhhhhHHHHHHHHhc---CC--------CHHHHHHHHHHHHHHHhhcCc----hh
Q 000143 1474 TKQSSVQLLGAMAYCA----PQQLSQCLPKIVPKLTEVLT---DT--------HPKVQSAGQTALQQVGSVIKN----PE 1534 (2058)
Q Consensus 1474 ~R~~a~~~Lg~la~~~----p~~l~~~L~~Iip~L~~~L~---D~--------~~~VR~aA~~aL~~l~~~~~~----~~ 1534 (2058)
.|-.++++|..-.... +..+.. ..=+..++++.. +. .+.+|..|.-++.++-+.+.. ..
T Consensus 166 ~r~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~ 243 (810)
T 3now_A 166 ARDGVIELITRNVHYTALEWAERLVE--IRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKAR 243 (810)
T ss_dssp HHHHHHHHHHHHTTCTTTTHHHHHHH--TTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred hHHHHHHHHHHhCCccccccccchhh--HhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHH
Confidence 8888888887665322 111111 111223333322 21 478999999999999998872 22
Q ss_pred HHhHHHH-HHhccCCCC--hhHH--HHHHHHHhccccccCChh--hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1535 IASLVPT-LLMGLTDPN--DHTK--YSLDILLQTTFVNTVDAP--SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1535 i~~lvp~-Ll~~l~d~~--~~vr--~al~~L~~~~f~~~~~~~--~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
+.+.+.. +...+..++ ..++ .++.++....+- .... .....+|.+...+..++..++..|+.++++++.-
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~--~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~- 320 (810)
T 3now_A 244 FTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLD--VGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK- 320 (810)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHH--HHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHH--HHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-
Confidence 3333333 333343343 2344 244444321110 0000 0124678888888888999999999999997752
Q ss_pred CCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----C-----ccchHHHHHhhcccCC-ChHHHh
Q 000143 1608 TEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----N-----FPDLVSWLLDALKSDN-SNVERS 1676 (2058)
Q Consensus 1608 ~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~-----~~~llp~L~~~L~~d~-~~~~R~ 1676 (2058)
...+.++ ..-+|.|..++.+.+..+|..|+.+|..+....+.+ . ..++++.+...|.++. +.++|.
T Consensus 321 ---~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~ 397 (810)
T 3now_A 321 ---KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRR 397 (810)
T ss_dssp ---HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHH
T ss_pred ---cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHH
Confidence 2223322 112388999998888999999888888887543311 2 2456888888887652 556899
Q ss_pred hHHHHHHHHHHHhchh-H-H--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch-----------------------
Q 000143 1677 GAAQGLSEVLAALGTV-Y-F--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV----------------------- 1729 (2058)
Q Consensus 1677 ~aa~~L~~i~~~~g~~-~-l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~----------------------- 1729 (2058)
.++++|+.+...-... . . ..++|.++..+.+.+..+...+++++++++.....
T Consensus 398 ~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ 477 (810)
T 3now_A 398 WAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHE 477 (810)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSC
T ss_pred HHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccc
Confidence 9999998875432111 1 1 46899999999989999999999999999874310
Q ss_pred ----hHH----H--hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc--ccchh-chHHhHhhhcCCCCHHHHHHHH
Q 000143 1730 ----QFQ----N--YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA--TTSLP-LLLPAVEDGIFNDNWRIRQSSV 1796 (2058)
Q Consensus 1730 ----~f~----p--yl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~--~~~l~-~llp~L~~~l~d~~~~vR~sav 1796 (2058)
++. . .-...+|++...+..+++.+|+.+.+++..+...-. ...++ ..+|.|...+.+.+...|..|.
T Consensus 478 ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa 557 (810)
T 3now_A 478 LDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHAT 557 (810)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHH
Confidence 010 0 112478999999999999999999999999863211 11112 2678888888888889999999
Q ss_pred HHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhC
Q 000143 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS-DVSLSVRQAALHVWKTIVANT 1875 (2058)
Q Consensus 1797 ~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~-D~~~~VR~aA~~~l~~lv~~~ 1875 (2058)
..++.+.... ++ +. .++.......++.|...+. |.....+..|+.++..++...
T Consensus 558 ~AL~nL~~~~-------------~p-----~~-------~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 558 QALARIGITI-------------NP-----EV-------SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HHHHHHHHHS-------------CH-----HH-------HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhcCC-------------Ch-----hh-------hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 9999885320 00 00 0000000123444444433 334444556777777777644
Q ss_pred hhhHHHhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc----hh--hchHHHHhhhcCCCChhHHHHHHHHHH
Q 000143 1876 PKTLKEIMP-VLMNTLISSLASSSSERRQVAGRALGELVRKLGER----VL--PSIIPILSRGLKDPSASRRQGVCIGLS 1948 (2058)
Q Consensus 1876 ~~~l~~~l~-~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~----~l--~~llp~L~~~l~d~~~~vR~~a~~aL~ 1948 (2058)
+..-..++. ..++.++..+.+++..+|..|+++++.++. +.. +. ...+|.|...+++++..+|..+|++|+
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA 690 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 332222222 345666666788899999999999999985 322 22 357889999999889999999999999
Q ss_pred HHHHhhChhhhHhHH--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhh---H--HHHHHHHHHhcCCCc-----
Q 000143 1949 EVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA---I--DEIVPTLLHALEDDQ----- 2016 (2058)
Q Consensus 1949 eii~~~~~~~l~~~~--~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~---~--~~ilp~Ll~~L~~~~----- 2016 (2058)
.+.... +......+ ...+|.|..++.+++.++|..|+.++..+... +... + ...+|.|.+.|.+++
T Consensus 691 nLt~~s-~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~ 768 (810)
T 3now_A 691 IITSVS-VKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAK 768 (810)
T ss_dssp HHHHHC-HHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHH
T ss_pred HHhCCC-HHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHH
Confidence 887642 33333334 36889999999999999999999999999762 3322 2 267899999987542
Q ss_pred chHHHHHHHHHHHhh
Q 000143 2017 TSDTALDGLKQILSV 2031 (2058)
Q Consensus 2017 ~~~~al~aL~~i~~~ 2031 (2058)
..+.|+.+|..++..
T Consensus 769 i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 769 AREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 357899999988864
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-13 Score=188.08 Aligned_cols=783 Identities=11% Similarity=0.092 Sum_probs=431.6
Q ss_pred HHHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------
Q 000143 1048 NELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED-------- 1119 (2058)
Q Consensus 1048 ~~~~~~~~~~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~-------- 1119 (2058)
.++...++...+.+++..+.+|+...|.+|.+.|++.... +....+...+. ..+.++.+|-.|..
T Consensus 7 l~~~~~~dv~~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----p~aw~~~~~iL--~~s~~~~vR~faa~~Lk~~I~~ 79 (1023)
T 4hat_C 7 LDFSNDLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----PDAWQKADQIL--QFSTNPQSKFIALSILDKLITR 79 (1023)
T ss_dssp GCTTSCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----TTGGGGHHHHH--HHCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----ccHHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHh
Confidence 3444456667888899999999888999999999876511 12222333333 23446677776654
Q ss_pred HHhhcCCCCCCCH-HhHHHHhc----CC-----CHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCC
Q 000143 1120 IWDRYGYDFGTDY-SGLFKALS----HS-----NYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVD 1188 (2058)
Q Consensus 1120 ~w~~~~~~~~~~~-~~ll~~l~----~~-----~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~ 1188 (2058)
.|...+.+....+ ..+++.+. ++ ...+|+..+.+++.++. .||+.|++.+..+.+...
T Consensus 80 ~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~----------- 148 (1023)
T 4hat_C 80 KWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSS----------- 148 (1023)
T ss_dssp HGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTT-----------
T ss_pred hhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhc-----------
Confidence 4665443322334 55665553 22 47788999999999985 578899999999887642
Q ss_pred CCchhhHHHHHHHHHhhhhhCCCChHHHHHHHHHhhccCCCHHHHHH-HHHHHHHHHHhhCccchhhHHHHHHHHhcccC
Q 000143 1189 AGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGR-MLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267 (2058)
Q Consensus 1189 ~~~~~R~~~~~al~~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~-al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~ 1267 (2058)
.+...+...+..+..+.+-+.. .-.+.-..-|+. ..+... .+++.+++.+...+...
T Consensus 149 ~~~~~~~~~L~iL~~L~EEV~~-------------~~~~~l~~~r~~~lk~~l~--------~~~~~I~~ll~~iL~~~- 206 (1023)
T 4hat_C 149 SSVNVCENNMIVLKLLSEEVFD-------------FSAEQMTQAKALHLKNSMS--------KEFEQIFKLCFQVLEQG- 206 (1023)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHT-------------SCTTTSCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-------------hhhccchHHHHHHHHHHHH--------HHHHHHHHHHHHHHhCC-
Confidence 1112344444444444332100 000111111221 111111 12556777777777652
Q ss_pred CChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHH-hhhCCCCHHHHHHHHHhhHhhHhh-c-cc--chH----HH
Q 000143 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-DVLNTPSEAVQRAVSSCLSPLMQS-M-QD--EAP----TL 1338 (2058)
Q Consensus 1268 ~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll-~~L~~~~~~V~~av~~~L~~l~~~-~-~~--~~~----~~ 1338 (2058)
.. . .+...++.+++....-++-..-.-..+++.++ ..|. ++..+.++++|+..++.. . ++ ... .+
T Consensus 207 ~~--~--~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~l 280 (1023)
T 4hat_C 207 AS--S--SLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLF 280 (1023)
T ss_dssp SS--C--HHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHH
T ss_pred CC--H--HHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHH
Confidence 11 1 45667788888766533211000013555666 5554 467888999999988862 2 22 122 22
Q ss_pred HHHHHHHH---------------hc--CCCHHHHHHHHHHHHHHHhhhCcccc--ch-hchHH----HHHHHHhCCCCHH
Q 000143 1339 VSRLLDQL---------------MK--SDKYGERRGAAFGLAGVVKGFGISSL--KK-YGIAA----TLREGLADRNSAK 1394 (2058)
Q Consensus 1339 v~~Ll~~L---------------~~--~~~~~vR~~Aa~~L~~l~~~~g~~~l--~~-~~il~----~L~~~l~~~~~~~ 1394 (2058)
++..++.+ .. +++....++-+..+..+.+....-.. +. .+++. .|......+ ++.
T Consensus 281 f~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~-d~e 359 (1023)
T 4hat_C 281 FQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE-ERE 359 (1023)
T ss_dssp HHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS-CHH
T ss_pred HHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC-cHH
Confidence 23333322 11 12233333334444433332211100 11 12322 333333333 555
Q ss_pred HHHHHHHHHHHHHHHhc------ccchhhHHHHHHHHHHHcCCCC---------------------H-HHHHHHHHHHHH
Q 000143 1395 RREGALLAFECLCEKLG------RLFEPYVIQMLPLLLVAFSDQV---------------------V-AVREAAECAARA 1446 (2058)
Q Consensus 1395 ~R~~al~al~~L~~~lg------~~~~p~l~~llp~Ll~~l~D~~---------------------~-~VR~aA~~al~~ 1446 (2058)
+=..++..+..+.+.+- ..+.|++.++++.++..+.-++ . ..-+...+++..
T Consensus 360 i~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~ 439 (1023)
T 4hat_C 360 LFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVY 439 (1023)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHH
Confidence 55556666666766442 3478889999999987654321 1 111122366666
Q ss_pred HHHhhhhhhHHhHHHHHHHhccC--CChHHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHHhc-----CCCHHHHHH
Q 000143 1447 MMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT-----DTHPKVQSA 1518 (2058)
Q Consensus 1447 l~~~l~~~~v~~llp~Ll~~L~~--~~~~~R~~a~~~Lg~la~~~p~-~l~~~L~~Iip~L~~~L~-----D~~~~VR~a 1518 (2058)
+....+.+.++.+++.+.+.+.+ .+|+.|.+++.++|+++.+..+ ...++++.++|.|+.++. |+++.||..
T Consensus 440 l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t 519 (1023)
T 4hat_C 440 LTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASD 519 (1023)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHH
Confidence 65555555567777877777764 6899999999999999988654 477899999999999886 566788999
Q ss_pred HHHHHHHHHhhcCc-h-hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHH
Q 000143 1519 GQTALQQVGSVIKN-P-EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596 (2058)
Q Consensus 1519 A~~aL~~l~~~~~~-~-~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A 1596 (2058)
+++++|++++++.. + +++.+ +..+..++.+.++.+...|
T Consensus 520 ~~~~lGry~~wl~~~~~~L~~v---------------------------------------l~~L~~~l~~~~~~v~~~A 560 (1023)
T 4hat_C 520 IMYVVGQYPRFLKAHWNFLRTV---------------------------------------ILKLFEFMHETHEGVQDMA 560 (1023)
T ss_dssp HHHHHHTCHHHHHHCHHHHHHH---------------------------------------HHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHH---------------------------------------HHHHHHHhhcCCHHHHHHH
Confidence 99999999987641 1 23333 3344445555556677777
Q ss_pred HHHHHHHHhhhC------CCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-CccchHHHHHhhcccC
Q 000143 1597 AQIVGNMCSLVT------EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NFPDLVSWLLDALKSD 1669 (2058)
Q Consensus 1597 ~~~l~~L~~~l~------~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-~~~~llp~L~~~L~~d 1669 (2058)
|.++.++|+-.. .+....||++.++..+.....+-.+.-+..+.+|+|.++...+.+ ..++++..|+..+..
T Consensus 561 ~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~- 639 (1023)
T 4hat_C 561 CDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNM- 639 (1023)
T ss_dssp HHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHH-
T ss_pred HHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHH-
Confidence 777777776322 123346899999999999888878888899999999999988754 122333333322210
Q ss_pred CChHHHhhHHHHHHHHHHH--hchhHHHHhhHHHHHhhccCC-hhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc
Q 000143 1670 NSNVERSGAAQGLSEVLAA--LGTVYFEHILPDIIRNCSHQR-ASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746 (2058)
Q Consensus 1670 ~~~~~R~~aa~~L~~i~~~--~g~~~l~~llp~Ll~~l~~~~-~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L 1746 (2058)
.+..+... -++..+ .+++ ...--..+.++..++...|..|.||+..++|.+++..
T Consensus 640 -----------~~~~l~~~~~~~~~~~-----------~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y 697 (1023)
T 4hat_C 640 -----------AWDTIVEQSTANPTLL-----------LDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLY 697 (1023)
T ss_dssp -----------HHHHHHHHHHHCTTGG-----------GCHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHhcCchhh-----------cCHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 01111110 011100 0000 0001124567778889999999999999999988754
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcch
Q 000143 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2058)
Q Consensus 1747 ~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~ 1826 (2058)
+-.... +...+..-|....+. | ..+.+ ..+|...++++...+.+. ++ .
T Consensus 698 ~~~s~~--------i~~~~~~~g~~~~~~--~-~~r~~----r~ik~~il~l~~~~i~~~------------~~-----~ 745 (1023)
T 4hat_C 698 RAVSSM--------ISAQVAAEGLIATKT--P-KVRGL----RTIKKEILKLVETYISKA------------RN-----L 745 (1023)
T ss_dssp HHHHHH--------HHHHHHHHCGGGGGS--H-HHHHH----HHHHHHHHHHHHHHHHHC------------SC-----H
T ss_pred HHHHHH--------HHHHHHhCCchhhcc--H-HHHHH----HHHHHHHHHHHHHHHhcC------------CC-----H
Confidence 322111 111111111111110 1 11111 134555556665554221 00 0
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHH----HHhcC---CC
Q 000143 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSD-VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLI----SSLAS---SS 1898 (2058)
Q Consensus 1827 e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D-~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~----~~L~~---~~ 1898 (2058)
+.. ...+-+...+.++...-....+ ....| +.+...++...+..+.+.+|.+++.+. ..+.+ +.
T Consensus 746 ~~~----~~~~~~~l~~~vl~dY~~~~~~~r~~~v----L~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~ 817 (1023)
T 4hat_C 746 DDV----VKVLVEPLLNAVLEDYMNNVPDARDAEV----LNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEY 817 (1023)
T ss_dssp HHH----HHHTHHHHHHHHHHHHHHSCGGGCCHHH----HHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSS
T ss_pred HHH----HHHhHHHHHHHHHHHHHhCChhhccHHH----HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccC
Confidence 111 1111011111112111111111 11222 333444444444444444554444443 33443 57
Q ss_pred HHHHHHHHHHHHHHHHHhCcc-------hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh--------hhhHhHH
Q 000143 1899 SERRQVAGRALGELVRKLGER-------VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK--------SQLLSFM 1963 (2058)
Q Consensus 1899 ~~~R~~A~~~Lg~L~~~lg~~-------~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~--------~~l~~~~ 1963 (2058)
++.|..-.+.+..+..++-.. .+..++..+..+++.+..++-..+...+.+++.+... .-+..|.
T Consensus 818 Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~ 897 (1023)
T 4hat_C 818 PEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYF 897 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 899999999888888876543 3345666677788888888888777888888765432 1233566
Q ss_pred hhHHHHHHHHhcCCCH
Q 000143 1964 DELIPTIRTALCDSIL 1979 (2058)
Q Consensus 1964 ~~ll~~L~~~L~D~d~ 1979 (2058)
..++.-+...+.|++.
T Consensus 898 ~~~~~~~~~v~td~~h 913 (1023)
T 4hat_C 898 FIFVSETFFVLTDSDH 913 (1023)
T ss_dssp HHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHhCchh
Confidence 6666666667777653
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-13 Score=189.00 Aligned_cols=621 Identities=12% Similarity=0.119 Sum_probs=360.0
Q ss_pred hHHHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCC--chHHHHHHHHHHhh----cCCC
Q 000143 1056 PNEVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDP--EKSVAEAAEDIWDR----YGYD 1127 (2058)
Q Consensus 1056 ~~~l~~ll~~l~~~--~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~--~~~~r~~a~~~w~~----~~~~ 1127 (2058)
.+++...++.+.+| |++.|..|.+.|++.... +....+...+ ....+ ++.+|-.|..+.+. .+.+
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-----p~aw~~~~~i--L~~~~~~~~~vr~fa~~~L~~~I~~l~~e 77 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-----STGWKICHEI--FSEKTKYKPSTRLICLQTLSEKVREWNNE 77 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-----TTHHHHHHHH--TTCTTTSCHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-----hhHHHHHHHH--HhCCCCCCHHHHHHHHHHHHHHHHhCChh
Confidence 35666667666666 688999999988876411 1122222222 22322 67777777665543 1211
Q ss_pred ----CCCCH-HhHHHHhc-----CCCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHH
Q 000143 1128 ----FGTDY-SGLFKALS-----HSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQG 1196 (2058)
Q Consensus 1128 ----~~~~~-~~ll~~l~-----~~~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~ 1196 (2058)
....+ ..+++.+. +....||+..+.+++.++. .||+.|++.+..+.+..... +....-..
T Consensus 78 ~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~---------~~~~~~~~ 148 (980)
T 3ibv_A 78 SNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAAS---------SQSEFSNF 148 (980)
T ss_dssp TSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHH---------CCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCC---------ChhHHHHH
Confidence 11223 55666554 2467899999999999985 47888888888887765421 00011112
Q ss_pred HHHHHHHhhhhhCC----------------------CChHHHHHHH---HHhhccCCCHHHHHHHHHHHHHHHHhhCccc
Q 000143 1197 IALALHSAADVLRT----------------------KDLPVIMTFL---ISRALADTNADVRGRMLNAGIMIIDKHGRDN 1251 (2058)
Q Consensus 1197 ~~~al~~l~~~~~~----------------------~~~~~l~~~L---i~~~L~d~~~~VR~~al~a~~~~i~~~g~~~ 1251 (2058)
....+..+.+-+.. ++.+.+++.. +..+....++.++..+++|....+.--+...
T Consensus 149 ~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~ 228 (980)
T 3ibv_A 149 YLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININL 228 (980)
T ss_dssp HHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHH
T ss_pred HHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHh
Confidence 22233322222111 0111122222 1234444678888888888877776333222
Q ss_pred h--hhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHH-----HHhhhC--CCCHHHHHHHHH
Q 000143 1252 V--SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDK-----LLDVLN--TPSEAVQRAVSS 1322 (2058)
Q Consensus 1252 ~--~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~-----Ll~~L~--~~~~~V~~av~~ 1322 (2058)
+ ..+++.+...+.. +.+|.+|+++|..+...-.+.+.++ .++.. .+..+. +.+.++.+..++
T Consensus 229 i~~~~ll~~l~~~L~~--------~~~r~~A~ecL~ei~~k~~~~~~k~-~li~~l~L~~~~~~l~~~~~D~d~~~~la~ 299 (980)
T 3ibv_A 229 IVNEPCMNLLYSFLQI--------EELRCAACETMTEIVNKKMKPLEKL-NLLNILNLNLFFSKSQEQSTDPNFDEHVAK 299 (980)
T ss_dssp HHCHHHHHHHHHHTTS--------HHHHHHHHHHHHHHHHSCCCHHHHH-HHHHHHHHHHHHCC-----CCHHHHHHHHH
T ss_pred hhcchHHHHHHHHcCC--------hHHHHHHHHHHHHHHHcCCChhhHH-HHHHHHhHHHHHHHHhcccccHHHHHHHHH
Confidence 1 4677777777654 2689999999999986321111111 11211 112222 233333332222
Q ss_pred hhHhhHhhcccchHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHH
Q 000143 1323 CLSPLMQSMQDEAPTLVSRLLDQLMKSD---KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGA 1399 (2058)
Q Consensus 1323 ~L~~l~~~~~~~~~~~v~~Ll~~L~~~~---~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~a 1399 (2058)
.+..+. + .++.. .... +...+..+...+ ..+++.+.....++ +..+-..+
T Consensus 300 L~~~~g----e---~l~~~-----~~~~~~~~~~~~~~~~~~l--------------~~ll~~lL~~~~~~-~deVs~~t 352 (980)
T 3ibv_A 300 LINAQG----V---ELVAI-----KSDPSELSPELKENCSFQL--------------YNLFPYLIRYLSDD-YDETSTAV 352 (980)
T ss_dssp HHHHHH----H---HHHHH-----HTSCC--CHHHHHHHHHHH--------------HHTHHHHHHHHTCS-SHHHHHTT
T ss_pred HHHHHH----H---HHHHH-----ccCccccchhhhhhHHHHH--------------HHHHHHHHHHhCCC-chhHHHHH
Confidence 221111 1 11111 1111 111111111111 14566666666665 44444444
Q ss_pred HHHHHHHHHH---------hcccchhhHHHHHHHHHHHcCC-------C----C-----HHHHHHHHHHHHHHHHhhhhh
Q 000143 1400 LLAFECLCEK---------LGRLFEPYVIQMLPLLLVAFSD-------Q----V-----VAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1400 l~al~~L~~~---------lg~~~~p~l~~llp~Ll~~l~D-------~----~-----~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
+..+..+.+. +...+.|++.++++.++..+.- + + ...|.... .+..+...++++
T Consensus 353 ~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~ 431 (980)
T 3ibv_A 353 FPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSS 431 (980)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChH
Confidence 4444433332 1234567888888888876531 1 1 13565555 444444445544
Q ss_pred hH-H----hHHHHHHHhcc---CCChHHHHHHHHHHHHHHhhChhhH------hhhhhhHHHHHHHHhc-----CCCHHH
Q 000143 1455 GV-K----LVLPSLLKGLE---DKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKLTEVLT-----DTHPKV 1515 (2058)
Q Consensus 1455 ~v-~----~llp~Ll~~L~---~~~~~~R~~a~~~Lg~la~~~p~~l------~~~L~~Iip~L~~~L~-----D~~~~V 1515 (2058)
.+ . .+.+.+.+.+. +.+|+.+.+++.+++.++++++... ..++|.+++.+..+++ ++||.|
T Consensus 432 ~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V 511 (980)
T 3ibv_A 432 LFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLV 511 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHH
Confidence 43 3 34444445553 4579999999999999999876532 2567888888888766 899999
Q ss_pred HHHHHHHHHHHHhhcCc--hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHH
Q 000143 1516 QSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593 (2058)
Q Consensus 1516 R~aA~~aL~~l~~~~~~--~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr 1593 (2058)
|..++++++++++++.. .++..+++.++. + +++.+++..++
T Consensus 512 ~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~----~---------------------------------~gl~~~~~~V~ 554 (980)
T 3ibv_A 512 QLLYMEILVRYASFFDYESAAIPALIEYFVG----P---------------------------------RGIHNTNERVR 554 (980)
T ss_dssp HHHHHHHHHHTGGGGGTCCTTHHHHHHHHTS----T---------------------------------TTTTCCCTTTH
T ss_pred HHHHHHHHHHHHHHHhcCchhHHHHHHHHhc----c---------------------------------ccccCCChhHH
Confidence 99999999999998752 233333333333 0 04455556777
Q ss_pred HHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCC---C------------------CHHHHHHHHHHHHHHHHhhcc
Q 000143 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD---P------------------IPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1594 ~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d---~------------------~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
..|+.++.++|+.. ...+.||++.++..+..++.- + ..+-+-...+|+|.++...+.
T Consensus 555 ~~a~~af~~f~~~~--~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~ 632 (980)
T 3ibv_A 555 PRAWYLFYRFVKSI--KKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNL 632 (980)
T ss_dssp HHHHHHHHHHHHHT--TTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHh--hHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCC
Confidence 88888888888853 245678888888887776652 1 122356689999999987652
Q ss_pred ---c---CccchHHHHHhhcc----cCCCh-HHHh---hHHHHHHHHHHHhch---------hHHHHhhHHHHHhhc--c
Q 000143 1653 ---E---NFPDLVSWLLDALK----SDNSN-VERS---GAAQGLSEVLAALGT---------VYFEHILPDIIRNCS--H 1707 (2058)
Q Consensus 1653 ---~---~~~~llp~L~~~L~----~d~~~-~~R~---~aa~~L~~i~~~~g~---------~~l~~llp~Ll~~l~--~ 1707 (2058)
+ ++..+++.+++.+. ..... ..+. ....+++.+++++.. ..+.++++.++..+. .
T Consensus 633 ~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~ 712 (980)
T 3ibv_A 633 TPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMG 712 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcC
Confidence 1 56667777665553 11111 1111 344566777777632 245677777777666 3
Q ss_pred CChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc
Q 000143 1708 QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1708 ~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~ 1771 (2058)
.+..+|+++..+|..+..++|.++.||++.++..++..+.-.+ -...+..++.++..|+.+
T Consensus 713 ~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e---~~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 713 FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNE---LVDVLSFISQLIHIYKDN 773 (980)
T ss_dssp CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTT---HHHHHHHHHHHHHHTTTT
T ss_pred CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999996554322 234567778888888876
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-15 Score=201.76 Aligned_cols=503 Identities=16% Similarity=0.160 Sum_probs=348.0
Q ss_pred hhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHH
Q 000143 1223 RALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVV 1302 (2058)
Q Consensus 1223 ~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv 1302 (2058)
+.+.+++...|..++.-...... .|.+. ..+++.+.+.+.++ +. .+|..+...+..+++.-+ ....-++
T Consensus 20 ~~L~~~~~~~k~~~~~kli~~~~-~G~d~-~~~~~~vi~l~~s~----~~--~~Krl~yl~l~~~~~~~~---e~~~l~~ 88 (591)
T 2vgl_B 20 AELNNEKKEKRKEAVKKVIAAMT-VGKDV-SSLFPDVVNCMQTD----NL--ELKKLVYLYLMNYAKSQP---DMAIMAV 88 (591)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHH-TTCCC-GGGHHHHHHTTSSS----CH--HHHHHHHHHHHHHHHHSH---HHHHTTH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHH-CCCCh-HHHHHHHHHHhCCC----CH--HHHHHHHHHHHHHcccCc---hHHHHHH
Confidence 45677777777666544443332 34433 33444444454431 12 578888888877765311 1123346
Q ss_pred HHHHhhhCCCCHHHHHHHHHhhHhhHhhcccc-hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHH
Q 000143 1303 DKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381 (2058)
Q Consensus 1303 ~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~-~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~ 1381 (2058)
+.+.+.|.++++.+|..+..+++.+. .++ .+.+++.+... ..+.++.+|+.|+.++..+... +++.++...+++
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~~l~~~l~~~-L~d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~ 163 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR---VDKITEYLCEPLRKC-LKDEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLD 163 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHHHHHHHHHHH-SSCSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHHHHHHHHHHH-cCCCChHHHHHHHHHHHHHHhh-ChhhcccccHHH
Confidence 77888899999999988877777654 223 34445555544 4567899999999999999884 455554346889
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 000143 1382 TLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVL 1460 (2058)
Q Consensus 1382 ~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~-~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~ll 1460 (2058)
.+.+.+.|+ ++.+|.+|+.+++.++..-+.. +-+.....++.++..+.|.++..+....+++..+... ++.....++
T Consensus 164 ~l~~lL~d~-d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~-~~~~~~~~l 241 (591)
T 2vgl_B 164 SLRDLIADS-NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK-DDREAQSIC 241 (591)
T ss_dssp HHHHTTSCS-CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC-SHHHHHHHH
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC-ChHHHHHHH
Confidence 999999876 8999999999999987754322 2233445666677777778888887776666544311 123347788
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHHhh---ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHh
Q 000143 1461 PSLLKGLEDKAWRTKQSSVQLLGAMAYC---APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2058)
Q Consensus 1461 p~Ll~~L~~~~~~~R~~a~~~Lg~la~~---~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2058)
+.+...+.+.++.++.+|+.+++.+... .++.+......+.+.+..++ ++++.||..|+.+++.++...++ .+..
T Consensus 242 ~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~ 319 (591)
T 2vgl_B 242 ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQ 319 (591)
T ss_dssp HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHH
Confidence 9999999999999999999999998753 23445555566777777655 47899999999999999875432 1222
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh
Q 000143 1538 LVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2058)
Q Consensus 1538 lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py 1616 (2058)
.+..++....|| ..+| .+++.+.... . ......+++.+...+++.++++|..++..++.++.. +.+.
T Consensus 320 ~~~~~~~~~~d~-~~Ir~~al~~L~~l~--~---~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~------~~~~ 387 (591)
T 2vgl_B 320 EIKVFFVKYNDP-IYVKLEKLDIMIRLA--S---QANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK------VEQS 387 (591)
T ss_dssp CTTTTSCCTTSC-HHHHHHHHHHHHHTC--C---SSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT------CHHH
T ss_pred HHHhheeccCCh-HHHHHHHHHHHHHHC--C---hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------ChhH
Confidence 222233334555 6776 7888876521 1 223556888888888999999999999999998863 2344
Q ss_pred HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHH
Q 000143 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~ 1696 (2058)
....++.+..++.+....++..+..+++.+....++ ....+++.|.+.+.+...+..|..+++.+|+++..... ..+
T Consensus 388 ~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~-~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~~~ 464 (591)
T 2vgl_B 388 AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN-KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--ADE 464 (591)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS-SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--HHH
T ss_pred HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc-hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--HHH
Confidence 566788888999999999999999999998876543 34678888888888777777899999999987654422 345
Q ss_pred hhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhc-cC-CCHHHHHHHHHHHHHH
Q 000143 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-AD-ENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1697 llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L-~d-~~~~VR~~a~~al~~l 1764 (2058)
++..+++.+.+.++.+|..++.++..+....+... ...+..+++.. .| .+.+||+.|...++.+
T Consensus 465 ~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll 530 (591)
T 2vgl_B 465 LLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET----QELVQQVLSLATQDSDNPDLRDRGYIYWRLL 530 (591)
T ss_dssp HHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence 66666767777789999999999988877655432 23344444443 45 6789999987766544
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-15 Score=190.88 Aligned_cols=344 Identities=13% Similarity=0.071 Sum_probs=256.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hcccchhhHH--HHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhhhh-
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEK-LGRLFEPYVI--QMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQ- 1454 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~-lg~~~~p~l~--~llp~Ll~~l~D~-~~~VR~aA~~al~~l~~~l~~~- 1454 (2058)
++.+.+.+.++ ++.+|..|+.++..+... ........+. .++|.++..+.++ ++.+|..|.+++..++...+..
T Consensus 22 l~~l~~~l~s~-~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMIEMIFSK-SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHHHHHHSS-CHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 56677777766 889999999999887652 2223344444 5899999999988 8999999999999987633221
Q ss_pred -h-H-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhh
Q 000143 1455 -G-V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTD-THPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1455 -~-v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~ 1529 (2058)
. + ...+|.+.+.+.++++.+|..|+.+|+.++...+..-...+ ..++|.+...+.+ .++.||..|+++|+.++..
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 1 2 46899999999999999999999999999987654322111 3688999999985 7899999999999999965
Q ss_pred c-C---chhHHhHHHHHHhccCCCChhHH-HHHHHHHhcccccc--CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000143 1530 I-K---NPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2058)
Q Consensus 1530 ~-~---~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~--~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~ 1602 (2058)
. . ...+..++|.++..+.+++..++ .++.++........ ...-....++|.+...+.+.++.+|..++.++++
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 3 1 12347889999999998888776 45555554211100 0000113468888899999999999999999999
Q ss_pred HHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---Cc-cchHHHHHhhcccCCChHHHhh
Q 000143 1603 MCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NF-PDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1603 L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~-~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
++.. .+....... ..+++.+..++.++++.+|..|+.+|+.++....+. .. ..++|.+++.+.+ .+..+|..
T Consensus 261 l~~~--~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~ 337 (450)
T 2jdq_A 261 IVTG--DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT-AEFRTRKE 337 (450)
T ss_dssp HTTS--CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH-SCHHHHHH
T ss_pred HhhC--ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc-CCHHHHHH
Confidence 9862 211111122 258899999999999999999999999998532211 11 3688999888884 45679999
Q ss_pred HHHHHHHHHHHhchhHH-----HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHh
Q 000143 1678 AAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL 1727 (2058)
Q Consensus 1678 aa~~L~~i~~~~g~~~l-----~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~ 1727 (2058)
++++|+.++....++.. ..++|.++..+.+.++.+|..++.++..+....
T Consensus 338 a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 338 AAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999876433322 358899999999999999999999999988743
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-14 Score=196.65 Aligned_cols=506 Identities=12% Similarity=0.068 Sum_probs=328.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhh-HhhhhhhH
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKI 1500 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~-l~~~L~~I 1500 (2058)
+|.++..+.++++.+|.++...+...-. .......+|.+...+.+.+..+|..|+.+|+.++...+.. .....+.+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~---~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhH---HHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 5667778888889999988887764421 1112567888989888999999999999999998753322 11123478
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHH
Q 000143 1501 VPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVP 1579 (2058)
Q Consensus 1501 ip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp 1579 (2058)
++.|+..|.+ .++.+|..|+.+|..++..-.+ +.. +. -...+|
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~---------------------~~~---i~------------~~g~I~ 237 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREG---------------------LLA---IF------------KSGGIP 237 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH---------------------HHH---HH------------HTTHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh---------------------HHH---HH------------HcCCHH
Confidence 8888888864 4899999999999998753100 000 00 012567
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----C
Q 000143 1580 IVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----N 1654 (2058)
Q Consensus 1580 ~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~ 1654 (2058)
.|...+++.+..++..|+.++.+++.. .......+. ...++.|..++.++++.++..+..++..++....+. .
T Consensus 238 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~--~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~ 315 (780)
T 2z6g_A 238 ALVNMLGSPVDSVLFHAITTLHNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 315 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--STTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCC--ChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 777788888889999999999999874 212212222 468899999999999999999999999887421110 1
Q ss_pred ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch-hH--HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhH
Q 000143 1655 FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VY--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF 1731 (2058)
Q Consensus 1655 ~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~-~~--l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f 1731 (2058)
-...++.|+..+++......+..++.++..++..-.. .. -...+|.++..+.+.+..++..++.++..++......
T Consensus 316 ~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~- 394 (780)
T 2z6g_A 316 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ- 394 (780)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC-
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh-
Confidence 2357888888888655554455566666665531111 11 1346788889999889999999999999988655331
Q ss_pred HHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc---ch-hchHHhHhhhcCC-C-CHHHHHHHHHHHHHHHHH
Q 000143 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SL-PLLLPAVEDGIFN-D-NWRIRQSSVELLGDLLFK 1805 (2058)
Q Consensus 1732 ~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~---~l-~~llp~L~~~l~d-~-~~~vR~sav~ll~~Ll~~ 1805 (2058)
.....++|.++..+.++++.+|..++.++..+....... .+ ...+|.|.+.+.+ . ...+|..++.+++.+..
T Consensus 395 -~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~- 472 (780)
T 2z6g_A 395 -EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS- 472 (780)
T ss_dssp -SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS-
T ss_pred -hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh-
Confidence 123578999999999999999999999998875421110 01 1256777776654 2 34899999999988721
Q ss_pred hhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHhhChhhHH----
Q 000143 1806 VAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLK---- 1880 (2058)
Q Consensus 1806 ~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~-~~VR~aA~~~l~~lv~~~~~~l~---- 1880 (2058)
.+.+ .+.....+... ..++.|...+.+.. ..+|..|..+++.++.+.. ...
T Consensus 473 -------------~~~~---~~~~~~~v~~~-------~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~ 528 (780)
T 2z6g_A 473 -------------RHQD---AEMAQNAVRLH-------YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE 528 (780)
T ss_dssp -------------SSTT---HHHHHHHHHHT-------TCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHHH
T ss_pred -------------cCch---HHHHHHHHHHc-------CCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHHH
Confidence 0000 11111111111 12444555544433 5899999999888875221 111
Q ss_pred -HhHHHHHHHHHHH----------------hc--CCCHHHHHHHHHHHHHHHHHhCcc--h-hhchHHHHhhhcCCCChh
Q 000143 1881 -EIMPVLMNTLISS----------------LA--SSSSERRQVAGRALGELVRKLGER--V-LPSIIPILSRGLKDPSAS 1938 (2058)
Q Consensus 1881 -~~l~~L~~~l~~~----------------L~--~~~~~~R~~A~~~Lg~L~~~lg~~--~-l~~llp~L~~~l~d~~~~ 1938 (2058)
..+|.++..+... +. ....+++..++.+|+.++..-... + -...+|.|.+.+.+++++
T Consensus 529 ~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~ 608 (780)
T 2z6g_A 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIEN 608 (780)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHH
T ss_pred CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHH
Confidence 1234444433221 00 012456778888888876321100 1 246789999999999999
Q ss_pred HHHHHHHHHHHHHHhhChhhhHhHH--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Q 000143 1939 RRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2058)
Q Consensus 1939 vR~~a~~aL~eii~~~~~~~l~~~~--~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~ 1998 (2058)
+|..++.+|+.+... ++ ....+ ...++.|..++.+++++||++|+.++..+....+.
T Consensus 609 v~~~a~~aL~~L~~~--~~-~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~ 667 (780)
T 2z6g_A 609 IQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 667 (780)
T ss_dssp HHHHHHHHHHHHHTS--HH-HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHhcC--HH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999987632 21 22222 23678889999999999999999999999876543
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-15 Score=190.72 Aligned_cols=379 Identities=15% Similarity=0.102 Sum_probs=281.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhh-hh---hhH-H-hHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhChhhHh
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQL-SA---QGV-K-LVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQLS 1494 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l-~~---~~v-~-~llp~Ll~~L~~~-~~~~R~~a~~~Lg~la~~~p~~l~ 1494 (2058)
+|.++..+.++++.+|..|..+++.+.... .+ ..+ . .++|.+++.+.+. ++.+|..|+.+|+.++...++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 677777788889999999999999986522 21 122 2 6899999999988 899999999999999986655433
Q ss_pred hhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--h-hH-HhHHHHHHhccCC-CChhHH-HHHHHHHhcccc-
Q 000143 1495 QCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--P-EI-ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFV- 1566 (2058)
Q Consensus 1495 ~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~-~i-~~lvp~Ll~~l~d-~~~~vr-~al~~L~~~~f~- 1566 (2058)
... ..++|.+.++++++++.||..|+++|+.++..... . .+ ..++|.++..+.+ ++..+| .++.+++.....
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 222 47899999999999999999999999999874321 1 11 3678999999985 667776 566666652211
Q ss_pred -ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh-HhhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1567 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1567 -~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py-l~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
+.........++|.+...+.+.+..++..++.++++++.. .+...... -..++|.+..++.++++.+|..++.+++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG--PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC--CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence 1222233466889999999999999999999999999862 21111111 2357899999999999999999999999
Q ss_pred HHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HH-HHhhHHHHHhhccCChhHHHHH
Q 000143 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGY 1716 (2058)
Q Consensus 1645 ~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l-~~llp~Ll~~l~~~~~~vR~~a 1716 (2058)
.++...+.. .-..++|.+++.+.+ .++.+|..++.+|+.++.+.... .+ ..++|.++..+.++++.+|..+
T Consensus 260 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a 338 (450)
T 2jdq_A 260 NIVTGDDIQTQVILNCSALQSLLHLLSS-PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEA 338 (450)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHH
T ss_pred HHhhCChHHHHHHHHCccHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998643321 113688999998885 56779999999999987532221 12 3688999999999999999999
Q ss_pred HHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----------chhch-----HHh
Q 000143 1717 LTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------SLPLL-----LPA 1779 (2058)
Q Consensus 1717 l~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----------~l~~l-----lp~ 1779 (2058)
+.+++.++.........++ ..++|.++..+.++++.+|..++.++..++...... ....+ ++.
T Consensus 339 ~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 418 (450)
T 2jdq_A 339 AWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDK 418 (450)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHH
Confidence 9999999876443333333 358999999999999999999999999887643321 11112 455
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1780 VEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1780 L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
|.....+++..++..++.++..++
T Consensus 419 l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 419 IEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHC
Confidence 666667778889999998888874
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-14 Score=195.32 Aligned_cols=492 Identities=12% Similarity=0.070 Sum_probs=328.9
Q ss_pred HHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccc-cc-hhch
Q 000143 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISS-LK-KYGI 1379 (2058)
Q Consensus 1302 v~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~-l~-~~~i 1379 (2058)
++.+++.|.++++.++.+++..+...-.. .-....++.++..|. +++..+|..|+.+|..+........ +. ...+
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~--~i~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDA--ELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHH--HHHhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 56788888999988888777766533211 012456777777555 5578999999999999886432111 11 1257
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--h
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l--~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~ 1455 (2058)
++.|.+.+.+..++..|..|+.++..++..... ...+ ...+|.++..+.++++.+|..|..+|..++...... .
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~ 271 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHHREG--LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh--HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHH
Confidence 888888887655899999999999887653211 1111 247899999999999999999999999998764332 1
Q ss_pred H--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhcC
Q 000143 1456 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHP-KVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1456 v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~-~L~~Iip~L~~~L~D~~~-~VR~aA~~aL~~l~~~~~ 1531 (2058)
+ ...+|.+++.+.+.+++++..++.+|..++...++.-.. .-...++.|+.++.+.++ .++..++.+|..++..-.
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~ 351 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 351 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTT
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChH
Confidence 2 467899999999999999999999999888654432111 112567888888887654 456678888888885322
Q ss_pred ch-hH--HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1532 NP-EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1532 ~~-~i--~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
+. .+ ...+|.|+..+.+++..++ .++.++......... ......++|.|...+++.++++|..|+.++++++..
T Consensus 352 ~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~- 429 (780)
T 2z6g_A 352 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 429 (780)
T ss_dssp HHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT-CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh-hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-
Confidence 21 12 3568999999998876654 555555442111100 112345889999999999999999999999999762
Q ss_pred CCCCchhhh-HhhhhHHHHHhhCC-CC-HHHHHHHHHHHHHHHHhhccc-------CccchHHHHHhhcccCCChHHHhh
Q 000143 1608 TEPKDMIPY-IGLLLPEVKKVLVD-PI-PEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1608 ~~~~~l~py-l~~ll~~L~~~l~d-~~-~~vR~~a~~aLg~l~~~lg~~-------~~~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
.+...... -...++.|..++.+ .+ ..+|..|+.+|+.++...++. .-...+|.|++.|.++..+.+|..
T Consensus 430 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~ 508 (780)
T 2z6g_A 430 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508 (780)
T ss_dssp -CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred -CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHH
Confidence 21111111 12467778777765 33 489999999999987432221 113578999999987666678999
Q ss_pred HHHHHHHHHHHhchh-HH--HHhhHHHHHhhccCC----------------------hhHHHHHHHHHHHhHHHhchhHH
Q 000143 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQR----------------------ASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1678 aa~~L~~i~~~~g~~-~l--~~llp~Ll~~l~~~~----------------------~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
++++|+.++..-... .+ ..++|.+...+.+.+ ..++..++.+++.++... ...
T Consensus 509 A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~--~~~ 586 (780)
T 2z6g_A 509 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI--HNR 586 (780)
T ss_dssp HHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH--HHH
T ss_pred HHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh--hhH
Confidence 999999987421111 11 245666666554432 456777778888776422 111
Q ss_pred HhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc-ccchh--chHHhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSLP--LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1733 pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~-~~~l~--~llp~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
..+ ..++|+++..+.++++.|+..+..++..+...-. ...+. ..++.|.+.+.+.+..+|..|...+..+.
T Consensus 587 ~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 587 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp HHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 112 3468999999999999999999999988752200 01111 25778888899999999999999999885
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.8e-15 Score=192.99 Aligned_cols=381 Identities=13% Similarity=0.096 Sum_probs=287.4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh---hH--HhHHHHHHHhccCC-ChHHHHHHHHHHHHHHhhChhhH
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---GV--KLVLPSLLKGLEDK-AWRTKQSSVQLLGAMAYCAPQQL 1493 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~---~v--~~llp~Ll~~L~~~-~~~~R~~a~~~Lg~la~~~p~~l 1493 (2058)
..++.++..+.++++.+|..|..++..++...... .+ ..++|.+++.+.+. ++.+|..|+.+|+.++...+...
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 45777888888889999999999999886543211 12 46899999999987 89999999999999998665432
Q ss_pred hhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hh-H-HhHHHHHHhccCCCChhHH-HHHHHHHhcc-cc
Q 000143 1494 SQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PE-I-ASLVPTLLMGLTDPNDHTK-YSLDILLQTT-FV 1566 (2058)
Q Consensus 1494 ~~~-L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~-i-~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~-f~ 1566 (2058)
... -..++|.|+.++.++++.||..|+++|+.++..... .. + ..++|.|+..+.+++..++ .++.++.... ..
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 221 147889999999999999999999999999864211 11 1 4688999999988777775 5666655421 11
Q ss_pred -ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1567 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1567 -~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
..........++|.|...+.+.++.++..++.++++++.. .+....... ..++|.|..++.++++.+|..++.+|+
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 2223334566889999999999999999999999999862 222222233 268899999999999999999999999
Q ss_pred HHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HH-HHhhHHHHHhhccCChhHHHHH
Q 000143 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YF-EHILPDIIRNCSHQRASVRDGY 1716 (2058)
Q Consensus 1645 ~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l-~~llp~Ll~~l~~~~~~vR~~a 1716 (2058)
.++...+.. .-..++|.++..|.+. ++.+|..++++|+.++.+.... .+ ..++|.++..+.++++.+|..+
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998533221 1136889999998854 6779999999999987532221 11 4678899999999999999999
Q ss_pred HHHHHHhHHHhch--hHHHhHHH--HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----------c---hh--chH
Q 000143 1717 LTLFKYLPRSLGV--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVLVEHYATT----------S---LP--LLL 1777 (2058)
Q Consensus 1717 l~~l~~la~~~g~--~f~pyl~~--ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----------~---l~--~ll 1777 (2058)
+.+++.++...+. ....++.. ++|.++..+.++++.+|..++.++..++...... . +. ..+
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcH
Confidence 9999999887554 44455444 8999999999999999999999999887654321 1 11 146
Q ss_pred HhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1778 PAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1778 p~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
+.|.....+++..++..+...+..++
T Consensus 484 ~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 484 EKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 67777788899999999998888763
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-14 Score=186.36 Aligned_cols=388 Identities=14% Similarity=0.108 Sum_probs=277.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc---ccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc
Q 000143 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF 1414 (2058)
Q Consensus 1338 ~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~---~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~ 1414 (2058)
.++.+++.|. ++++.+|..|+.+|..++...... .+....++|.|.+.+.+++++.+|..|+.+++.++.......
T Consensus 75 ~l~~lv~~L~-s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 75 SLPAMIGGVY-SDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp CHHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3556666664 346788888888888887654311 122336889999999887559999999999999987432211
Q ss_pred hhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhc-cCCChHHHHHHHHHHHHHHhh
Q 000143 1415 EPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1415 ~p~l~-~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L-~~~~~~~R~~a~~~Lg~la~~ 1488 (2058)
...+. ..+|.++..+.++++.||..|.++++.++...+.. .+ ...+|.++..+ .+.++.++..++.+|+.++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 22222 48999999999999999999999999998653331 12 34789999999 577899999999999999987
Q ss_pred ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcccccc
Q 000143 1489 APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNT 1568 (2058)
Q Consensus 1489 ~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~ 1568 (2058)
.+.........++|.|..++.+.++.|+..|+++|+.++.... ...+ .+.
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~-~~~~----------------------~~~------- 283 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTN-DKIQ----------------------AVI------- 283 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCH-HHHH----------------------HHH-------
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHH----------------------HHH-------
Confidence 5544344557899999999999999999999999999975311 1100 000
Q ss_pred CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCC-CHHHHHHHHHHHHHH
Q 000143 1569 VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDP-IPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1569 ~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~-~~~vR~~a~~aLg~l 1646 (2058)
-..++|.+...+.+.++.++..|+.++++++.. .+......+ ..++|.|..++.++ ++.+|..|+.+|+.+
T Consensus 284 -----~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl 356 (528)
T 4b8j_A 284 -----EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTG--DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNI 356 (528)
T ss_dssp -----HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred -----HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcC--CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 012566677777777888999999999998762 222222222 35788999999988 999999999999999
Q ss_pred HHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhH---H--HHhhHHHHHhhccCChhHHHHHH
Q 000143 1647 IRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---F--EHILPDIIRNCSHQRASVRDGYL 1717 (2058)
Q Consensus 1647 ~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~---l--~~llp~Ll~~l~~~~~~vR~~al 1717 (2058)
+....+. .-..++|.|++.|.+. +..+|..++.+|+.++.....+. + ..+++.+...+.+.++.++..++
T Consensus 357 ~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al 435 (528)
T 4b8j_A 357 TAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 435 (528)
T ss_dssp HTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence 8632221 1236889999988754 66689999999999987643432 2 35788999999999999999999
Q ss_pred HHHHHhHHHhchh----------HHHhHHH--HHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000143 1718 TLFKYLPRSLGVQ----------FQNYLQQ--VLPAILDGLADENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1718 ~~l~~la~~~g~~----------f~pyl~~--ilp~Ll~~L~d~~~~VR~~a~~al~~l 1764 (2058)
.++..+....... +..++.. .++.+.....+++++++..+...+..+
T Consensus 436 ~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 436 EGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999987754331 2222211 244555555666666666665555443
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-14 Score=187.21 Aligned_cols=381 Identities=14% Similarity=0.110 Sum_probs=286.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hhH--HhHHHHHHHhccCCC-hHHHHHHHHHHHHHHhhChhhH
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQL 1493 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~v--~~llp~Ll~~L~~~~-~~~R~~a~~~Lg~la~~~p~~l 1493 (2058)
.-+|.++..+.++++.+|..|..++..++..... ..+ ..++|.+++.+.+.+ +.+|..|+.+|+.++...++..
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 3477888888888999999999999998765431 112 468999999999876 9999999999999998765543
Q ss_pred hhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhcc-CCCChhHH-HHHHHHHhcccc
Q 000143 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGL-TDPNDHTK-YSLDILLQTTFV 1566 (2058)
Q Consensus 1494 ~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l-~d~~~~vr-~al~~L~~~~f~ 1566 (2058)
.... ...+|.|+.++.++++.||..|+++|+.++..... ..+ ...+|.|+..+ .+++..++ .++.++......
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 2222 26899999999999999999999999999864221 112 35788999998 56666665 455555542111
Q ss_pred -ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh-HhhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1567 -NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1567 -~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py-l~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
+.........++|.|...+.+.++.++..++.++++++.. ........ -..+++.|..++.++++.+|..|+.+|+
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~ 311 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG--TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG 311 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS--CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence 2222234466889999999999999999999999998852 21111122 2368899999999999999999999999
Q ss_pred HHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh--H--HHHhhHHHHHhhccCChhHHHHH
Q 000143 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y--FEHILPDIIRNCSHQRASVRDGY 1716 (2058)
Q Consensus 1645 ~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~--~--l~~llp~Ll~~l~~~~~~vR~~a 1716 (2058)
.++...... .-..++|.|+..|.+..+..+|..++++|+.++.+.... . -..++|.++..+.+.++.+|..+
T Consensus 312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 391 (528)
T 4b8j_A 312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391 (528)
T ss_dssp HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 998633221 124678999999986536779999999999998632211 1 13678999999999999999999
Q ss_pred HHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----------c---hh--chHHh
Q 000143 1717 LTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----------S---LP--LLLPA 1779 (2058)
Q Consensus 1717 l~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----------~---l~--~llp~ 1779 (2058)
+.+++.++.........|+ ..+++.++..+.++++.++..++.++..++...... . +. ..+..
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 9999999987556666666 458999999999999999999999999887644220 0 11 13556
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1780 VEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1780 L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
+.....+++..++..+..++..+
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~ 494 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAY 494 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH
Confidence 67777888999999998888876
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5e-11 Score=164.25 Aligned_cols=779 Identities=10% Similarity=0.081 Sum_probs=416.8
Q ss_pred HHHhcCChHHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------H
Q 000143 1049 ELCLGLQPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------I 1120 (2058)
Q Consensus 1049 ~~~~~~~~~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~ 1120 (2058)
++.+.++...+..++..+.+|+++.|..|.+.|.+.... +........+ ...+.++.+|-.|.. .
T Consensus 20 d~~~~~Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-----p~aw~~~~~i--L~~s~~~~vR~fAa~~L~~~I~~~ 92 (1073)
T 3gjx_A 20 DFSQKLDINLLDNVVNCLYHGEGAQQRMAQEVLTHLKEH-----PDAWTRVDTI--LEFSQNMNTKYYGLQILENVIKTR 92 (1073)
T ss_dssp SSSCCCSHHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCC-----SCHHHHHTCC-----CCSHHHHHHHHHHHHHHHHHT
T ss_pred CcCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-----chHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHhh
Confidence 333445557888999999999999999999999887511 1222222222 234457777777654 3
Q ss_pred HhhcCCCCCCCH-HhHHHHhcC---------CCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCC
Q 000143 1121 WDRYGYDFGTDY-SGLFKALSH---------SNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDA 1189 (2058)
Q Consensus 1121 w~~~~~~~~~~~-~~ll~~l~~---------~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~ 1189 (2058)
|...+.+....+ ..+++.+.. .++.+++..+++++.++.. ||+.|+..+..+.+....
T Consensus 93 W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~~~----------- 161 (1073)
T 3gjx_A 93 WKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGASRT----------- 161 (1073)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHH-----------
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHhCC-----------
Confidence 655443322344 566665531 3578899999999999864 888899888888876531
Q ss_pred CchhhHHHHHHHHHhhhhhCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCC
Q 000143 1190 GWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASD 1269 (2058)
Q Consensus 1190 ~~~~R~~~~~al~~l~~~~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~ 1269 (2058)
+...+...+..|..+.+.+..- - ..-+ . ..|..-+ ...+. ..++.+++.+..++... .+
T Consensus 162 ~~~~~~~~L~IL~~L~EEV~d~--------~-~~~l---~-~~r~~~l---k~~L~----~~~~~Il~ll~~iL~~~-~~ 220 (1073)
T 3gjx_A 162 SESLCQNNMVILKLLSEEVFDF--------S-SGQI---T-QVKAKHL---KDSMC----NEFSQIFQLCQFVMENS-QN 220 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTS--------H-HHHB---C-HHHHHHH---HHHHH----HTCHHHHHHHHHHHHHC-CC
T ss_pred CHHHHHHHHHHHHHHHHHHHhc--------c-cccc---c-HHHHHHH---HHHHH----HHHHHHHHHHHHHhccc-CC
Confidence 1124455555555554432110 0 0001 0 1111111 11111 23667777777777652 21
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHH-HhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHh-
Q 000143 1270 EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKL-LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM- 1347 (2058)
Q Consensus 1270 ~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~L-l~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~- 1347 (2058)
..+...++.+++....-++-+.-.-..+++.+ ...|. ++..+.++++|+..++..-.+...+.+..+++.+.
T Consensus 221 ----~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~~~~ 294 (1073)
T 3gjx_A 221 ----APLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVSQYEEQFETLFTLTMM 294 (1073)
T ss_dssp ----HHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 24566778888887764432100001345555 35554 46789999999998876422222233333332211
Q ss_pred -----------------cCCCHHHHHHHHHHHHHHHhhhCccccc------h--h---chHHHHHHHHhCCCCHHHHHHH
Q 000143 1348 -----------------KSDKYGERRGAAFGLAGVVKGFGISSLK------K--Y---GIAATLREGLADRNSAKRREGA 1399 (2058)
Q Consensus 1348 -----------------~~~~~~vR~~Aa~~L~~l~~~~g~~~l~------~--~---~il~~L~~~l~~~~~~~~R~~a 1399 (2058)
.+++.+ ..-..+++.+...+|..... . . ..+.++......+ +..+=+.+
T Consensus 295 ~i~~ilp~~~~l~~~y~~~~~~d--~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~-d~ei~kit 371 (1073)
T 3gjx_A 295 QLKQMLPLNTNIRLAYSNGKDDE--QNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVE-ETEIFKIC 371 (1073)
T ss_dssp HHHHHSCTTSCHHHHHHTCCTTH--HHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCS-CHHHHHHH
T ss_pred HHHHhcCCchhHHHHHhccchhh--HHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 011100 11223333333322211100 0 0 1222233333333 55555556
Q ss_pred HHHHHHHHHHhc-------------------------ccchhhHHHHHHHHHHHcCCCC---------------------
Q 000143 1400 LLAFECLCEKLG-------------------------RLFEPYVIQMLPLLLVAFSDQV--------------------- 1433 (2058)
Q Consensus 1400 l~al~~L~~~lg-------------------------~~~~p~l~~llp~Ll~~l~D~~--------------------- 1433 (2058)
+..+..+.+.+- ..+.|++.++...++..+.-++
T Consensus 372 f~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~ 451 (1073)
T 3gjx_A 372 LEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTD 451 (1073)
T ss_dssp HHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCH
T ss_pred HHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcc
Confidence 665555555431 0156677777777776654221
Q ss_pred -HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccC--CChHHHHHHHHHHHHHHhhChh-hHhhhhhhHHHHHHHHhc
Q 000143 1434 -VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED--KAWRTKQSSVQLLGAMAYCAPQ-QLSQCLPKIVPKLTEVLT 1509 (2058)
Q Consensus 1434 -~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~--~~~~~R~~a~~~Lg~la~~~p~-~l~~~L~~Iip~L~~~L~ 1509 (2058)
-.+++..-+++..+..-.+.+....+++.+-+.+.. .+|+.+.++|.++|+++.+... .-..+++.+++.|..+..
T Consensus 452 ~~~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e 531 (1073)
T 3gjx_A 452 SINLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCE 531 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccc
Confidence 023444555665544222333345666666665553 4699999999999999866554 456889999999998875
Q ss_pred CC-----CHHHHHHHHHHHHHHHhhcCc--hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHH
Q 000143 1510 DT-----HPKVQSAGQTALQQVGSVIKN--PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2058)
Q Consensus 1510 D~-----~~~VR~aA~~aL~~l~~~~~~--~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~ 1582 (2058)
.+ .+.|+...++.+|++.+++.+ .+++.++..+++
T Consensus 532 ~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~-------------------------------------- 573 (1073)
T 3gjx_A 532 QKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFE-------------------------------------- 573 (1073)
T ss_dssp HSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH--------------------------------------
T ss_pred cccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHH--------------------------------------
Confidence 44 356777788999999887642 233444444444
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhhCC------CCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC-c
Q 000143 1583 RGLRERSAETKKKAAQIVGNMCSLVTE------PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN-F 1655 (2058)
Q Consensus 1583 ~~L~d~s~~vr~~A~~~l~~L~~~l~~------~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~-~ 1655 (2058)
.+.+.++.++..||.++..+|.-... +.+..||++.++..+.....+-.++-.....+|+|.++...|.+. .
T Consensus 574 -~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~ 652 (1073)
T 3gjx_A 574 -FMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQ 652 (1073)
T ss_dssp -HTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred -HHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchH
Confidence 44444556666777777777653221 123467888888888888877778888889999999999887642 2
Q ss_pred cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHh--chhHHHHhhHHHHHhhccCChhHH--HHHHHHHHHhHHHhchhH
Q 000143 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL--GTVYFEHILPDIIRNCSHQRASVR--DGYLTLFKYLPRSLGVQF 1731 (2058)
Q Consensus 1656 ~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~--g~~~l~~llp~Ll~~l~~~~~~vR--~~al~~l~~la~~~g~~f 1731 (2058)
+.++..|+..+.. .+..+.... +.+ .+.|++ .++ -.++.+...++...|..|
T Consensus 653 ~~~i~~Lm~~~~~------------~w~~l~~~~~~~~~-----------~~~d~~-~i~~l~~il~~n~~v~~~~g~~f 708 (1073)
T 3gjx_A 653 EHLIEKYMLLPNQ------------VWDSIIQQATKNVD-----------ILKDPE-TVKQLGSILKTNVRACKAVGHPF 708 (1073)
T ss_dssp HHHHHHHTHHHHH------------HHHHHHHHHHHCGG-----------GGGCHH-HHHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHH------------HHHHHHHHhhcCch-----------hccChH-HHHHHHHHHhhhHHHHhhcchhH
Confidence 3333333222210 111111111 111 011110 011 124456677888999999
Q ss_pred HHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcc
Q 000143 1732 QNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSG 1811 (2058)
Q Consensus 1732 ~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~ 1811 (2058)
.|++..+.|-++...+- ....+...+..-|....+. .+.+++ ..+|...+.++...+.+
T Consensus 709 ~~~~~~i~~~~l~~y~~--------~s~~i~~~v~~~g~~~~~~---~~~~~~----r~ik~eil~l~~~~i~~------ 767 (1073)
T 3gjx_A 709 VIQLGRIYLDMLNVYKC--------LSENISAAIQANGEMVTKQ---PLIRSM----RTVKRETLKLISGWVSR------ 767 (1073)
T ss_dssp HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCGGGGSS---HHHHHH----HHHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHhCCchhhcc---HHHHHH----HHHHHHHHHHHHHHHhc------
Confidence 99999998877753321 1111111111111111110 111111 13455555666554311
Q ss_pred cccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHH
Q 000143 1812 KALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSD-VSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTL 1890 (2058)
Q Consensus 1812 k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D-~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l 1890 (2058)
.++ .+ .+.+.+=+...+.++...-....+ ....| +.++..++...+..+.+.+|.+++.+
T Consensus 768 -------~~~----~~----~v~~~~i~pl~~~vl~dY~~~~p~~r~~ev----L~l~s~iv~k~~~~~~~~~~~il~~v 828 (1073)
T 3gjx_A 768 -------SND----PQ----MVAENFVPPLLDAVLIDYQRNVPAAREPEV----LSTMAIIVNKLGGHITAEIPQIFDAV 828 (1073)
T ss_dssp -------CSC----HH----HHHHHTSHHHHHHTHHHHHHSCGGGCCTHH----HHHHHHHHHHHGGGTGGGHHHHHHHH
T ss_pred -------CCC----HH----HHHHHhHHHHHHHHHHHHhcCCcccccHHH----HHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 010 11 111111111222222221111100 11222 23333444433333334444444443
Q ss_pred H----HHhc---CCCHHHHHHHHHHHHHHHHHhCcch-------hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh
Q 000143 1891 I----SSLA---SSSSERRQVAGRALGELVRKLGERV-------LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK 1956 (2058)
Q Consensus 1891 ~----~~L~---~~~~~~R~~A~~~Lg~L~~~lg~~~-------l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~ 1956 (2058)
. ..+. .+.++.|..-.+.+..+..++-... +..++..+..+++.+..++-..+...+.+++.+...
T Consensus 829 f~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~ 908 (1073)
T 3gjx_A 829 FECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQ 908 (1073)
T ss_dssp HHHHHHHHSSCSSSCHHHHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCcccCcHHHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhc
Confidence 3 3344 4579999999999998888865432 345677777888888877777777777777766432
Q ss_pred ------hhhHhHHhhHHHHHHHHhcCCC
Q 000143 1957 ------SQLLSFMDELIPTIRTALCDSI 1978 (2058)
Q Consensus 1957 ------~~l~~~~~~ll~~L~~~L~D~d 1978 (2058)
.-+..|.-.++.-+...+.|++
T Consensus 909 ~~~~~~~F~~~~~~~~~~~i~~v~td~~ 936 (1073)
T 3gjx_A 909 EEAAAQSFYQTYFCDILQHIFSVVTDTS 936 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 1234455566666666666664
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.1e-14 Score=184.89 Aligned_cols=384 Identities=13% Similarity=0.098 Sum_probs=283.0
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccchhhH-HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhhhhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFEPYV-IQMLPLLLVAFSDQ-VVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg-~~~~p~l-~~llp~Ll~~l~D~-~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
..++.+.+.+.++ ++..|..|+.++..+....+ ......+ ..++|.++..+.++ ++.+|..|.+++..++...+..
T Consensus 87 ~~i~~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 87 QELPQMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp CCHHHHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 4567777778776 78999999888887754321 1222222 25789999999997 8999999999999997643322
Q ss_pred --hH--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1455 --GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1455 --~v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~-~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
.+ ...+|.++..+.+.++.+|..|+.+|+.++...+..-.. .-..++|.|..++.+.++.|+..|+++|..++..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 12 467899999999999999999999999999765432111 1136889999999999999999999999999965
Q ss_pred c-Cc---hhHHhHHHHHHhccCCCChhHH-HHHHHHHhcccccc--CChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHH
Q 000143 1530 I-KN---PEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT--VDAPSLALLVPIVHRGLRERSAETKKKAAQIVGN 1602 (2058)
Q Consensus 1530 ~-~~---~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~--~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~ 1602 (2058)
- .. .....++|.|+..+.+++..++ .++.++........ ...-.-..++|.+...+.+.++.++..|+.++++
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 4 21 2347899999999999888776 45555554211110 0000112467889999999999999999999999
Q ss_pred HHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---C-ccchHHHHHhhcccCCChHHHhh
Q 000143 1603 MCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---N-FPDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1603 L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~-~~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
++.. .+....... ..++|.+..++.++++.+|..|+.+|+.++....+. . -..++|.|++.|.+ .+..+|..
T Consensus 326 l~~~--~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~ 402 (530)
T 1wa5_B 326 IVTG--NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV-AEYKTKKE 402 (530)
T ss_dssp HTTS--CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-SCHHHHHH
T ss_pred HHcC--CHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc-CCHHHHHH
Confidence 9862 222112222 368899999999999999999999999998632221 1 14688889888874 56679999
Q ss_pred HHHHHHHHHHHhch--hH---H--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchh-------HHHhHHH-----H
Q 000143 1678 AAQGLSEVLAALGT--VY---F--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ-------FQNYLQQ-----V 1738 (2058)
Q Consensus 1678 aa~~L~~i~~~~g~--~~---l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~-------f~pyl~~-----i 1738 (2058)
++++|+.++...+. ++ + ..++|.+...+.+.++.+|..++.++..+....... ..+|... .
T Consensus 403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~ 482 (530)
T 1wa5_B 403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGG 482 (530)
T ss_dssp HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCc
Confidence 99999999887544 32 2 348899999999999999999999999988754321 1223332 4
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHH
Q 000143 1739 LPAILDGLADENESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1739 lp~Ll~~L~d~~~~VR~~a~~al~~lv 1765 (2058)
++.+...+.+++++|++.+..++..++
T Consensus 483 ~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 483 MEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 778888889999999998888877654
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-13 Score=180.81 Aligned_cols=477 Identities=12% Similarity=0.066 Sum_probs=313.3
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHh-hhhhhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhcCchhH
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS-QCLPKIVPKLTEVLTDT-HPKVQSAGQTALQQVGSVIKNPEI 1535 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~-~~L~~Iip~L~~~L~D~-~~~VR~aA~~aL~~l~~~~~~~~i 1535 (2058)
..+|.+...+.++++.+|..|+.+|+.++...+.... ...+.+++.+++.|.+. ++.+|..|+.+|..++..- .
T Consensus 14 g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~---~- 89 (644)
T 2z6h_A 14 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR---E- 89 (644)
T ss_dssp TTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH---H-
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh---h-
Confidence 3466777777777778888888888888765432211 11246788888888764 8999999999998876521 1
Q ss_pred HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000143 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2058)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p 1615 (2058)
.+. .+. -...+|.|.+.+++.++.++..|+.++.+++.. .......
T Consensus 90 -----------------~~~---~i~------------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~--~~~~~~~ 135 (644)
T 2z6h_A 90 -----------------GLL---AIF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH--QEGAKMA 135 (644)
T ss_dssp -----------------HHH---HHH------------TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH--STTHHHH
T ss_pred -----------------hHH---HHH------------HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhC--cchhHHH
Confidence 010 010 012567777778888889999999999999874 2122222
Q ss_pred hH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhc
Q 000143 1616 YI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690 (2058)
Q Consensus 1616 yl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g 1690 (2058)
+. ...+|.|..++.+++++++..++.+|..++...++. .-...++.|++.+++......+..++.+|..++..-.
T Consensus 136 v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~ 215 (644)
T 2z6h_A 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 215 (644)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcc
Confidence 22 478999999999999999999999999988532211 1135788888888866555556666777666542111
Q ss_pred h-hHH--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 000143 1691 T-VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2058)
Q Consensus 1691 ~-~~l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~ 1767 (2058)
. ..+ ...++.+...+.+.+..++..++.++..++...... .....++|.++..+.++++.+|..++.++..+...
T Consensus 216 ~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 216 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 0 111 347888899998889999999999999998754331 23457899999999999999999999999887643
Q ss_pred hcc---cch-hchHHhHhhhcCC--CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhh
Q 000143 1768 YAT---TSL-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841 (2058)
Q Consensus 1768 ~~~---~~l-~~llp~L~~~l~d--~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~ 1841 (2058)
... ... ...+|.|.+.+.+ +.+.+|..++..++.+.. .+.+ .+.....+..
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~--------------~~~~---~~~~q~~v~~------ 350 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS--------------RHQE---AEMAQNAVRL------ 350 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--------------SSTT---HHHHHHHHHH------
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc--------------CCch---HHHHHHHHHH------
Confidence 111 011 1256777777654 247999999999998731 0000 0111111111
Q ss_pred HHHHHHHHHHhhcCC-CHHHHHHHHHHHHHHHhhChhhHHHhH-HHHHHHHHHHhcC----------------------C
Q 000143 1842 RNEVLAALYMVRSDV-SLSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLAS----------------------S 1897 (2058)
Q Consensus 1842 ~~~vL~~L~~~~~D~-~~~VR~aA~~~l~~lv~~~~~~l~~~l-~~L~~~l~~~L~~----------------------~ 1897 (2058)
...++.+...+.+. ...+|..|..+++.+..+.. ....+. ..+++.++..+.+ .
T Consensus 351 -~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~ 428 (644)
T 2z6h_A 351 -HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 428 (644)
T ss_dssp -TTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSC
T ss_pred -ccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhccccc
Confidence 12345555555444 46899999988888875322 112111 1233333333332 2
Q ss_pred CHHHHHHHHHHHHHHHHHhCcc--h-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH--hhHHHHHHH
Q 000143 1898 SSERRQVAGRALGELVRKLGER--V-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRT 1972 (2058)
Q Consensus 1898 ~~~~R~~A~~~Lg~L~~~lg~~--~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~--~~ll~~L~~ 1972 (2058)
+.+++..+..+|+.++...... + -...+|.|.+.+.+.++++|..++.+|+.+... ++ ....+ ...++.|..
T Consensus 429 ~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~-~~~~i~~~g~l~~L~~ 505 (644)
T 2z6h_A 429 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KE-AAEAIEAEGATAPLTE 505 (644)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HH-HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HH-HHHHHHHcCChhHHHH
Confidence 3556677778888776432111 1 246789999999999999999999999887642 21 11222 335678888
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhChhhHH
Q 000143 1973 ALCDSILEVRESAGLAFSTLFKSAGMQAID 2002 (2058)
Q Consensus 1973 ~L~D~d~~VR~~Aa~a~~~l~~~~g~~~~~ 2002 (2058)
++.+++++||++|+.+++.+....+..+..
T Consensus 506 ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~ 535 (644)
T 2z6h_A 506 LLHSRNEGVATYAAAVLFRMSEDKPQDYKK 535 (644)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTTTSCHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhccCcHhhhc
Confidence 999999999999999999998766544433
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-13 Score=181.16 Aligned_cols=539 Identities=14% Similarity=0.094 Sum_probs=327.8
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHH
Q 000143 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2058)
Q Consensus 1425 Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L 1504 (2058)
+-..+.+++...|..+..-+-.+ ..-++.+....+.+++.+.+++...|+.+...+..++...++.+ ..+++.+
T Consensus 39 ir~~l~~~~~~~k~~~l~kli~~--~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~----~l~in~l 112 (618)
T 1w63_A 39 IRSSFREEDNTYRCRNVAKLLYM--HMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH----LLMTNCI 112 (618)
T ss_dssp HHHHHTTTCTTTHHHHHHHHHHH--HHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH----HHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHH--HHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH----HHHHHHH
Confidence 33445555555555443222222 22334455677778888889999999888887777776554322 3567778
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHH
Q 000143 1505 TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHR 1583 (2058)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~ 1583 (2058)
.+-++|+++.+|..|+++|+.++. ....+.++|.+.+.+.|+++++| .|+.++....- ........+++.+..
T Consensus 113 ~kDL~~~n~~vr~lAL~~L~~i~~---~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~---~~p~~v~~~~~~l~~ 186 (618)
T 1w63_A 113 KNDLNHSTQFVQGLALCTLGCMGS---SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIR---KVPELMEMFLPATKN 186 (618)
T ss_dssp HHHHSCSSSHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH---HCGGGGGGGGGGTTT
T ss_pred HHhcCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---HChHHHHHHHHHHHH
Confidence 888999999999999999999873 23457889999999999999998 46655554110 111223456777788
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC---------------CCCHHHHHHHHHHHHHHHH
Q 000143 1584 GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---------------DPIPEVRSVAARAIGSLIR 1648 (2058)
Q Consensus 1584 ~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~---------------d~~~~vR~~a~~aLg~l~~ 1648 (2058)
.+.|+++.++..|+.+++.++.. ++ +...++..++|.+...+. .+++-.+....++++.++.
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~--~~-~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCER--SP-DMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCS--HH-HHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred HhCCCCHhHHHHHHHHHHHHHHh--Ch-HHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 88999999999999888888752 21 112233445555555443 2467778888888888875
Q ss_pred hhcc--cCccchHHHHHhhccc--CCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhH
Q 000143 1649 GMGE--ENFPDLVSWLLDALKS--DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLP 1724 (2058)
Q Consensus 1649 ~lg~--~~~~~llp~L~~~L~~--d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la 1724 (2058)
.-.+ +.+.++++.+...... ..+..+...++.++..+.. ........++.+...+.++++.+|..++.+++.++
T Consensus 264 ~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~--~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~ 341 (618)
T 1w63_A 264 NDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS--ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTV 341 (618)
T ss_dssp TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 3211 1222344433332211 1122344555555544311 11122345666777788889999999999999999
Q ss_pred HHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHH
Q 000143 1725 RSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLF 1804 (2058)
Q Consensus 1725 ~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~ 1804 (2058)
...+..|.+|. +.++..+.|++..||..+++.+..++. ...++.+++.+.+.+.+.+..+|..++..++.+..
T Consensus 342 ~~~p~~~~~~~----~~i~~~l~d~d~~Ir~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 342 QTDHNAVQRHR----STIVDCLKDLDVSIKRRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp HHHHHHHGGGH----HHHHHGGGSSCHHHHHHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hhCHHHHHHHH----HHHHHHccCCChhHHHHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 87666555554 466677889999999999988877643 34466788888888888889999999999999853
Q ss_pred HhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHH
Q 000143 1805 KVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP 1884 (2058)
Q Consensus 1805 ~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~ 1884 (2058)
+..+ ..+.....+.+.+ .+....++..+...+..++.+.|..-...++
T Consensus 415 k~~~----------------~~~~~v~~ll~lL----------------~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~ 462 (618)
T 1w63_A 415 KYAP----------------SKRWHIDTIMRVL----------------TTAGSYVRDDAVPNLIQLITNSVEMHAYTVQ 462 (618)
T ss_dssp SSCC----------------CHHHHHHHHHHHH----------------HHTGGGSCSSHHHHHHHHHHHSCSTHHHHHH
T ss_pred HhCc----------------cHHHHHHHHHHHH----------------HhccchhHHHHHHHHHHHHhcChhHHHHHHH
Confidence 2110 0111112222222 1111223333455566666656644444555
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc---------h-hhchHHHHhhhcC--CCChhHHHHHHHHHHHHHH
Q 000143 1885 VLMNTLISSLASSSSERRQVAGRALGELVRKLGER---------V-LPSIIPILSRGLK--DPSASRRQGVCIGLSEVMA 1952 (2058)
Q Consensus 1885 ~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~---------~-l~~llp~L~~~l~--d~~~~vR~~a~~aL~eii~ 1952 (2058)
.+...+.... ..+.. ...+++++|+.+..+... . ...+++.+...++ ..++.+|..+..++..+..
T Consensus 463 ~L~~~l~~~~-~~~~~-~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~ 540 (618)
T 1w63_A 463 RLYKAILGDY-SQQPL-VQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLST 540 (618)
T ss_dssp HHHHHHHHCC-SCSHH-HHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccc-ccHHH-HHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 5555543211 12344 446899999998866321 1 1234455555443 4678899999999988877
Q ss_pred hhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc
Q 000143 1953 SAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSDTALDGLKQILSVR 2032 (2058)
Q Consensus 1953 ~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~~~~~~al~aL~~i~~~~ 2032 (2058)
..+.. .+.+...+.....|.|++||+.|...+..+.. . +++...++..++-.++ .......+|+.+.
T Consensus 541 ~~~~~-----~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~~--~----~~~~~~vl~~~P~~~~--~~~~~~~~~~~~~ 607 (618)
T 1w63_A 541 RFTCT-----VNRIKKVVSIYGSSIDVELQQRAVEYNALFKK--Y----DHMRSALLERMPVMEK--VTTNGPSEIVQTN 607 (618)
T ss_dssp TCSSC-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT--T----TTHHHHHHSCCCCCCC---------------
T ss_pred hCcch-----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--c----HHHHHHHhhcCCCCCc--cccCCcccccCCC
Confidence 66421 24445555666789999999999987777653 1 1345556666664332 2344456666554
Q ss_pred CC
Q 000143 2033 TT 2034 (2058)
Q Consensus 2033 ~~ 2034 (2058)
++
T Consensus 608 ~~ 609 (618)
T 1w63_A 608 GE 609 (618)
T ss_dssp --
T ss_pred CC
Confidence 43
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-13 Score=180.56 Aligned_cols=460 Identities=11% Similarity=0.052 Sum_probs=308.3
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc--c---hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-cc
Q 000143 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD--E---APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SS 1373 (2058)
Q Consensus 1300 ~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~--~---~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~-~~ 1373 (2058)
..++.|+..|+++++.+|..++.++..+...... . ....++.++..|..++++.+|+.|+.+|..+...... ..
T Consensus 17 ~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~ 96 (529)
T 1jdh_A 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred hhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHH
Confidence 4577888888899999999999998887753211 1 2357888888887776899999999999987653211 11
Q ss_pred cchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh
Q 000143 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2058)
Q Consensus 1374 l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~ 1452 (2058)
+.....+|.|.+.+.++ ++..|..++.++..++......-.... ...+|.++..+.++++.+|..+..++..++...+
T Consensus 97 i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~ 175 (529)
T 1jdh_A 97 IFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCH
Confidence 11236788898888876 789999999999999876432212221 3589999999999999999999999988764322
Q ss_pred hh--hH--HhHHHHHHHhccCCC-hHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1453 AQ--GV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2058)
Q Consensus 1453 ~~--~v--~~llp~Ll~~L~~~~-~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2058)
.. .+ ...+|.++..+.+.+ ...+..++.+|..++.+....-.-.-...++.+...+.+.++.++..++++|..++
T Consensus 176 ~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~ 255 (529)
T 1jdh_A 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh
Confidence 11 11 245777777776544 45566778888888754221111111368899999999999999999999999998
Q ss_pred hhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1528 SVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1528 ~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
....... ....++|.+.+.+.+.+++++..++.++++++..
T Consensus 256 ~~~~~~~--------------------------------------~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~- 296 (529)
T 1jdh_A 256 DAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN- 296 (529)
T ss_dssp TTCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-
T ss_pred cCChhhH--------------------------------------HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-
Confidence 6422100 0113566666777777788888888888888652
Q ss_pred CCCCchhhhH-hhhhHHHHHhhCC--CCHHHHHHHHHHHHHHHHhhccc-------CccchHHHHHhhcccCCChHHHhh
Q 000143 1608 TEPKDMIPYI-GLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1608 ~~~~~l~pyl-~~ll~~L~~~l~d--~~~~vR~~a~~aLg~l~~~lg~~-------~~~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
++....... ...++.+..++.+ .++.+|..++.+|+.++...++. .-...+|.|.+.|.++..+.+|..
T Consensus 297 -~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~ 375 (529)
T 1jdh_A 297 -NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp -CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred -CHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHH
Confidence 211111111 2457777777764 44899999999999997532221 112578999999987665678999
Q ss_pred HHHHHHHHHHHhchh-HH--HHhhHHHHHhhccCChhHHHHHHHHHH----------------------HhHHHhchhHH
Q 000143 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQRASVRDGYLTLFK----------------------YLPRSLGVQFQ 1732 (2058)
Q Consensus 1678 aa~~L~~i~~~~g~~-~l--~~llp~Ll~~l~~~~~~vR~~al~~l~----------------------~la~~~g~~f~ 1732 (2058)
++++++.++..-... .+ ..++|.+...+.+.++.+|..+.++++ .++... +..
T Consensus 376 a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~--~~~ 453 (529)
T 1jdh_A 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV--HNR 453 (529)
T ss_dssp HHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSH--HHH
T ss_pred HHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCc--hHH
Confidence 999999887532111 11 356788888777766666665544443 333211 111
Q ss_pred HhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH--hcccch-hchHHhHhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1733 NYL--QQVLPAILDGLADENESVRDAALGAGHVLVEH--YATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1733 pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~--~~~~~l-~~llp~L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
..+ ...+|.++..+.+++++++..+..++..+... +..... ...++.|.+.+.+++..+|..+...+..+
T Consensus 454 ~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 111 23678999999999999999999998876521 111001 12567888888999999999988887654
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-13 Score=183.38 Aligned_cols=462 Identities=11% Similarity=0.069 Sum_probs=319.3
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC-cccc
Q 000143 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG-ISSL 1374 (2058)
Q Consensus 1301 iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~-----~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g-~~~l 1374 (2058)
.++.|+..|.++++.+|..++.+|..+....... ....++.++..|..+++..+|..|+.+|..+..... ...+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 4677778888899999999999998887643211 236788888888777678999999999987765321 1111
Q ss_pred chhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh
Q 000143 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2058)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~ 1453 (2058)
.....++.|.+.+.++ ++.+|..|+.++..++.........+. ...+|.++..+.++++.++..+..++..++...+.
T Consensus 95 ~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~ 173 (644)
T 2z6h_A 95 FKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173 (644)
T ss_dssp HTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcH
Confidence 1236788899888876 789999999999999876543223333 36899999999999999999999999988753222
Q ss_pred h--hH--HhHHHHHHHhccCCC-hHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1454 Q--GV--KLVLPSLLKGLEDKA-WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1454 ~--~v--~~llp~Ll~~L~~~~-~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
. .+ ...+|.+++.+.+.+ ...+..++.+|..++.+....-.-.-...++.+...+.+.++.++..++++|..++.
T Consensus 174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~ 253 (644)
T 2z6h_A 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 253 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence 1 11 346788888887654 566778888988888543211111113578999999999999999999999999976
Q ss_pred hcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhC
Q 000143 1529 VIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608 (2058)
Q Consensus 1529 ~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~ 1608 (2058)
...+.. ....++|.|.+.+.+.+++++..++.++++++..
T Consensus 254 ~~~~~~--------------------------------------~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-- 293 (644)
T 2z6h_A 254 AATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-- 293 (644)
T ss_dssp GCTTCC--------------------------------------SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT--
T ss_pred cchhhh--------------------------------------hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--
Confidence 421100 0113566666777777788888888888888752
Q ss_pred CCCchhhh-HhhhhHHHHHhhCCC--CHHHHHHHHHHHHHHHHhhccc-------CccchHHHHHhhcccCCChHHHhhH
Q 000143 1609 EPKDMIPY-IGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSGA 1678 (2058)
Q Consensus 1609 ~~~~l~py-l~~ll~~L~~~l~d~--~~~vR~~a~~aLg~l~~~lg~~-------~~~~llp~L~~~L~~d~~~~~R~~a 1678 (2058)
.+...... -...++.|..++.+. .+.+|..++.+|+.++...++. .....+|.|.+.|.++.+..+|..+
T Consensus 294 ~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a 373 (644)
T 2z6h_A 294 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 373 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHH
T ss_pred CHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHH
Confidence 21111111 124677788877653 3899999999999997532321 1135789999999876666789999
Q ss_pred HHHHHHHHHHhchh-HH--HHhhHHHHHhhccC----------------------ChhHHHHHHHHHHHhHHHhchhHHH
Q 000143 1679 AQGLSEVLAALGTV-YF--EHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQN 1733 (2058)
Q Consensus 1679 a~~L~~i~~~~g~~-~l--~~llp~Ll~~l~~~----------------------~~~vR~~al~~l~~la~~~g~~f~p 1733 (2058)
+++|+.++..-... .+ ..++|.+.+.+.+. +..++..++.++..++........-
T Consensus 374 ~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l 453 (644)
T 2z6h_A 374 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVI 453 (644)
T ss_dssp HHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99998886432111 11 34566666665543 2456667777777776543222111
Q ss_pred hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhc-ccch--hchHHhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1734 YLQQVLPAILDGLADENESVRDAALGAGHVLVEHYA-TTSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~-~~~l--~~llp~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
.-...+|+++..+.+.+++++..+..++..+...-. ...+ ...++.|.+.+.+++..+|..+...++.+.
T Consensus 454 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~ 526 (644)
T 2z6h_A 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526 (644)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 123478999999999999999999999887753200 0011 125678888899999999999999999873
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-10 Score=165.90 Aligned_cols=787 Identities=10% Similarity=0.074 Sum_probs=423.0
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh----h
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV----L 1208 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~----~ 1208 (2058)
..++..+.+++...|+.|.+.|..+ +..|+.|.....-+.. +.+..+|..++..|++.... +
T Consensus 19 ~~~l~~~~~p~~~~r~~Ae~~L~~~-~~~p~~~~~l~~iL~~-------------s~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 19 DQVVSTFYQGSGVQQKQAQEILTKF-QDNPDAWQKADQILQF-------------STNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHH-HHSTTGGGGHHHHHHH-------------CSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHH-HhCchHHHHHHHHHhh-------------CCCHHHHHHHHHHHHHHHHhhCccC
Confidence 4555555667777888888888655 5667776654444422 12346899999999887642 2
Q ss_pred CCCChHHHHHHHHHhhc---cCC-----CHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHH
Q 000143 1209 RTKDLPVIMTFLISRAL---ADT-----NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2058)
Q Consensus 1209 ~~~~~~~l~~~Li~~~L---~d~-----~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~a 1280 (2058)
+.++...+-..++.... .++ +..||..+..+...++....++.|+++++.+...+.. + +..++.+
T Consensus 85 ~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~---~----~~~~~~~ 157 (1049)
T 3m1i_C 85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---S----VNVCENN 157 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTT---C----HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHcc---C----hHHHHHH
Confidence 33333334444432111 112 4678888888888877776667899999988877642 1 1357788
Q ss_pred HHHHHHHHhHhccCCc-chHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHH
Q 000143 1281 VIFTGALAKHLAKDDP-KVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAA 1359 (2058)
Q Consensus 1281 v~~Lg~La~~l~~~~p-~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa 1359 (2058)
+..|..+++.+..... .+. ..-+...-. .+...++.++..+...+....+..++..+.
T Consensus 158 l~~L~~l~eev~~~~~~~~~--------------~~r~~~lk~-------~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL 216 (1049)
T 3m1i_C 158 MIVLKLLSEEVFDFSAEQMT--------------QAKALHLKN-------SMSKEFEQIFKLCFQVLEQGSSSSLIVATL 216 (1049)
T ss_dssp HHHHHHHHHHHHTSCTTTSC--------------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhh--------------hHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 8888888865432110 000 000000000 001112333333344444444567888888
Q ss_pred HHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-hccc---chhhHHHHHHHHHH--------
Q 000143 1360 FGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEK-LGRL---FEPYVIQMLPLLLV-------- 1427 (2058)
Q Consensus 1360 ~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~-lg~~---~~p~l~~llp~Ll~-------- 1427 (2058)
.++...+.-..........+++.+.+.+.. ++..|..|+.++..+... ++.. +...+..+++.++.
T Consensus 217 ~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p 294 (1049)
T 3m1i_C 217 ESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMP 294 (1049)
T ss_dssp HHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCC
Confidence 888877664432222223567766643322 678899999888887754 1111 22222222222222
Q ss_pred ----------HcCCCCHHHHHHHHHHHHHHHHhhh---------hhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhh
Q 000143 1428 ----------AFSDQVVAVREAAECAARAMMSQLS---------AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYC 1488 (2058)
Q Consensus 1428 ----------~l~D~~~~VR~aA~~al~~l~~~l~---------~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~ 1488 (2058)
...|.+..+.....+.+..++..+. ...+..+++.++.....++..+...+++.+..+++.
T Consensus 295 ~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~ 374 (1049)
T 3m1i_C 295 VTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVAD 374 (1049)
T ss_dssp TTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 1234455555444444444433211 112345667777766667788888888888887762
Q ss_pred ------ChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCCh-h----HHHHH
Q 000143 1489 ------APQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPND-H----TKYSL 1557 (2058)
Q Consensus 1489 ------~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~-~----vr~al 1557 (2058)
......++++.+++.++..+.-+.. + .+..+.+.+. +-....|.+. . .+.++
T Consensus 375 l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed-~------------~~~~dd~~e~----~r~~~~d~d~~~~~~~~~~~L 437 (1049)
T 3m1i_C 375 LFYEPLKKHIYEEICSQLRLVIIENMVRPEE-V------------LVVENDEGEI----VREFVKESDTIQLYKSEREVL 437 (1049)
T ss_dssp HHHSTTCGGGGHHHHHHHHHHHHHTCCCCTT-C------------CEEECTTSCE----EECSSCCHHHHHHHHHHHHHH
T ss_pred HHhchhHHHHHHHHHHHHHHHHHHhcCCCcc-e------------eeeeCCCCcc----hHhhhccchHHHHHHHHHHHH
Confidence 2234556777777777665532110 0 0000000000 0000000000 0 11222
Q ss_pred HHHHhccccccCChhhHhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC-----C
Q 000143 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLR--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV-----D 1630 (2058)
Q Consensus 1558 ~~L~~~~f~~~~~~~~l~~llp~L~~~L~--d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~-----d 1630 (2058)
..+... .....+..+.+.+...+. ..+|..+..++.++|.++..+.. ..-.++++.+++.+..+.. |
T Consensus 438 ~~l~~~-----~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~-~~e~~~l~~v~~~l~~l~~~~~~~~ 511 (1049)
T 3m1i_C 438 VYLTHL-----NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSE-DTEKRFVVTVIKDLLDLTVKKRGKD 511 (1049)
T ss_dssp HHHHHH-----CHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCH-HHHHHHHHHHHHHHHHHTTSSCSHH
T ss_pred HHHHcc-----CHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCc-hhhHHHHHHHHHHHHHHHhhhcccc
Confidence 222210 001223344555555554 36799999999999988764322 1123567788888777543 3
Q ss_pred CCHHHHHHHHHHHHHHHHhhcc--cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh-----------HHHHh
Q 000143 1631 PIPEVRSVAARAIGSLIRGMGE--ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----------YFEHI 1697 (2058)
Q Consensus 1631 ~~~~vR~~a~~aLg~l~~~lg~--~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~-----------~l~~l 1697 (2058)
+.+.+|..++.++|.+++-+.. ++++.+++.+++.+. +.+..++..|+.++..++..++.. +++.+
T Consensus 512 ~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~-~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~i 590 (1049)
T 3m1i_C 512 NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMH-ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTI 590 (1049)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHH
Confidence 5666777788899988765543 377888888888886 456779999999999999887753 35566
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHhHHHhc--hhHHHhHHHHHHHHHHhccC-----------C-CH-HHHH--HHHHH
Q 000143 1698 LPDIIRNCSHQRASVRDGYLTLFKYLPRSLG--VQFQNYLQQVLPAILDGLAD-----------E-NE-SVRD--AALGA 1760 (2058)
Q Consensus 1698 lp~Ll~~l~~~~~~vR~~al~~l~~la~~~g--~~f~pyl~~ilp~Ll~~L~d-----------~-~~-~VR~--~a~~a 1760 (2058)
+..+...+.+.+...+..++.+++.+....| +...+|+..+++++...+.. . ++ .++. ..+.+
T Consensus 591 l~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~ 670 (1049)
T 3m1i_C 591 IRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKT 670 (1049)
T ss_dssp HHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHH
Confidence 6666566666666667888999999988887 35889999999988755421 0 11 1222 22344
Q ss_pred HHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChh
Q 000143 1761 GHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD 1840 (2058)
Q Consensus 1761 l~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~ 1840 (2058)
+..++..++.. +.|.+...+.+- ....+....++.......|.... .. .. ...
T Consensus 671 ~~~~~~~l~~~----f~p~~~~i~~~~-----l~~~~~~~~~~~~~~~~~g~~~~-------~~---p~----~~~---- 723 (1049)
T 3m1i_C 671 NVAVCTSMGAD----FYPQLGHIYYNM-----LQLYRAVSSMISAQVAAEGLIAT-------KT---PK----VRG---- 723 (1049)
T ss_dssp HHHHHHHHGGG----GHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCGGGG-------GS---HH----HHH----
T ss_pred HHHHHHHhhHH----HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHccCchhh-------hh---HH----HHH----
Confidence 44555555544 334332221100 00011111111000000000000 00 00 000
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhC---hhhHHHhHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHh
Q 000143 1841 KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANT---PKTLKEIMPVLMNTLISSLASSSSERR-QVAGRALGELVRKL 1916 (2058)
Q Consensus 1841 ~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~---~~~l~~~l~~L~~~l~~~L~~~~~~~R-~~A~~~Lg~L~~~l 1916 (2058)
...+.+.+. ..+....... +....+++|.+++.++..........| ..+..+++.++..+
T Consensus 724 -~~~~~~~l~---------------~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~ 787 (1049)
T 3m1i_C 724 -LRTIKKEIL---------------KLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKV 787 (1049)
T ss_dssp -HHHHHHHHH---------------HHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHH---------------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHH
Confidence 000111110 1111111111 112345566666655544322111101 34778889999988
Q ss_pred Ccch---hhchHHHHhhh----cC---CCChhHHHHHHHHHHHHHHhhChhhhH--h-HHhhHHHHHHHHhcCCCHHHHH
Q 000143 1917 GERV---LPSIIPILSRG----LK---DPSASRRQGVCIGLSEVMASAGKSQLL--S-FMDELIPTIRTALCDSILEVRE 1983 (2058)
Q Consensus 1917 g~~~---l~~llp~L~~~----l~---d~~~~vR~~a~~aL~eii~~~~~~~l~--~-~~~~ll~~L~~~L~D~d~~VR~ 1983 (2058)
|+.+ ++.+++.+... ++ ++.|++|......++.++..+...-+. + ....++.....++..+++++..
T Consensus 788 ~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~ 867 (1049)
T 3m1i_C 788 GHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEV 867 (1049)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHH
Confidence 8553 44555444433 32 357999999988889888877543221 1 2456677777788899999999
Q ss_pred HHHHHHHHHHHHhCh----h--------hHHHHHHHHHHhcCCCcch---HHHHHHHHHHHh
Q 000143 1984 SAGLAFSTLFKSAGM----Q--------AIDEIVPTLLHALEDDQTS---DTALDGLKQILS 2030 (2058)
Q Consensus 1984 ~Aa~a~~~l~~~~g~----~--------~~~~ilp~Ll~~L~~~~~~---~~al~aL~~i~~ 2030 (2058)
.+...+..+....+. . +...++..++..|.|..-+ +....-|++++.
T Consensus 868 ~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 868 NGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLIS 929 (1049)
T ss_dssp HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHHHHHHHH
Confidence 999999998766432 1 1224455556666554321 344445555543
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-13 Score=173.99 Aligned_cols=467 Identities=12% Similarity=0.074 Sum_probs=294.2
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhH-hhhhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHH
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIA 1536 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l-~~~L~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2058)
.+|.+.+.+.+++..+|..|+..|+.++...+... ....+..++.+.+.+.+ +++.+|..|+.+|..++.. ++
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~---~~-- 92 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---RE-- 92 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---HH--
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC---ch--
Confidence 45555555555566666666666666654322110 00123577788888864 4899999999999988652 11
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh
Q 000143 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2058)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py 1616 (2058)
.+..+. -...+|.+.+.+++.++.++..++.++.+++.. ++......
T Consensus 93 ----------------~~~~i~---------------~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~i 139 (529)
T 1jdh_A 93 ----------------GLLAIF---------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH--QEGAKMAV 139 (529)
T ss_dssp ----------------HHHHHH---------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CTTHHHHH
T ss_pred ----------------hHHHHH---------------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--CcchHHHH
Confidence 111000 012567777778888889999999999999873 21111111
Q ss_pred -HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch
Q 000143 1617 -IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT 1691 (2058)
Q Consensus 1617 -l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~ 1691 (2058)
-...+|.|..++.+++++++..+..++..++..-.+. .-...+|.+++.+++......+..+...|..+...-..
T Consensus 140 ~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 219 (529)
T 1jdh_A 140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 219 (529)
T ss_dssp HHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTH
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCccc
Confidence 2468899999999999999999999999887521110 11256888888887665554555556666555421110
Q ss_pred -hHH--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Q 000143 1692 -VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHY 1768 (2058)
Q Consensus 1692 -~~l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~ 1768 (2058)
..+ ...++.+...+.+.++.++..+++++..++...... .....++|.+++.+.++++.+|..++.++..+....
T Consensus 220 ~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 297 (529)
T 1jdh_A 220 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297 (529)
T ss_dssp HHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 111 357888899999999999999999999998754331 134578999999999999999999999998875421
Q ss_pred ccc---ch-hchHHhHhhhcCC--CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhH
Q 000143 1769 ATT---SL-PLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842 (2058)
Q Consensus 1769 ~~~---~l-~~llp~L~~~l~d--~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~ 1842 (2058)
... .. ...+|.+.+.+.+ +++.+|..++..++.+.. .+.+ .+.....+.+.
T Consensus 298 ~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~--------------~~~~---~~~~~~~i~~~------ 354 (529)
T 1jdh_A 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS--------------RHQE---AEMAQNAVRLH------ 354 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--------------SSTT---HHHHHHHHHHT------
T ss_pred HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc--------------CCch---HHHHHHHHHHc------
Confidence 100 01 1256777777653 458999999999998731 0000 11111122211
Q ss_pred HHHHHHHHHhhcCCC-HHHHHHHHHHHHHHHhhChhhHHHhH-HHHHHHHHHHhcCCCHHHHHHHH--------------
Q 000143 1843 NEVLAALYMVRSDVS-LSVRQAALHVWKTIVANTPKTLKEIM-PVLMNTLISSLASSSSERRQVAG-------------- 1906 (2058)
Q Consensus 1843 ~~vL~~L~~~~~D~~-~~VR~aA~~~l~~lv~~~~~~l~~~l-~~L~~~l~~~L~~~~~~~R~~A~-------------- 1906 (2058)
..++.+...+.+.. ..+|..+..+++.+..+.. ....+. ..+++.++..+.++++++|..|+
T Consensus 355 -~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~ 432 (529)
T 1jdh_A 355 -YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432 (529)
T ss_dssp -TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCH
T ss_pred -CChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccH
Confidence 12445555555544 6889999888888875322 222222 23455555556665666665444
Q ss_pred --------HHHHHHHHHhCcc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH-hhHHHHHHHHh
Q 000143 1907 --------RALGELVRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTAL 1974 (2058)
Q Consensus 1907 --------~~Lg~L~~~lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~-~~ll~~L~~~L 1974 (2058)
.+++.++...... .-...+|.|...+.++++++|..++.+++.+... ++...... ...++.|...+
T Consensus 433 ~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~~~~~~~L~~l~ 510 (529)
T 1jdh_A 433 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELL 510 (529)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHHcCChHHHHHHh
Confidence 3444443211000 1235678899999999999999999999876532 21111111 35678889999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 000143 1975 CDSILEVRESAGLAFSTL 1992 (2058)
Q Consensus 1975 ~D~d~~VR~~Aa~a~~~l 1992 (2058)
.++|++||+.|..++.++
T Consensus 511 ~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 511 HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 999999999999998775
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-10 Score=157.04 Aligned_cols=586 Identities=10% Similarity=0.058 Sum_probs=351.0
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCC----ChHHHH
Q 000143 1142 SNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTK----DLPVIM 1217 (2058)
Q Consensus 1142 ~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~----~~~~l~ 1217 (2058)
.++..|+.|-+-|..+- ..|+.|.....-|.. + + ..+..+|..++..|++....++.+ +...+-
T Consensus 20 sd~~~r~~A~~~L~~~q-~sp~aw~~~~~iL~~-------~--~--~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr 87 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLR-SSSTGWKICHEIFSE-------K--T--KYKPSTRLICLQTLSEKVREWNNESNLLELQMIR 87 (980)
T ss_dssp SCHHHHHHHHHHHHHHH-HSTTHHHHHHHHTTC-------T--T--TSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH-cChhHHHHHHHHHhC-------C--C--CCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH
Confidence 37888888877776554 457766544333321 0 0 114578999999988877766666 555555
Q ss_pred HHHHHhh--cc--CCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhcc
Q 000143 1218 TFLISRA--LA--DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAK 1293 (2058)
Q Consensus 1218 ~~Li~~~--L~--d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~ 1293 (2058)
..++.-. .. +....+|..+..+...++....+..|+.+++-+...+..... . ..-...+..|..+.+.+..
T Consensus 88 ~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~~i~~l~~~~~~~~~---~--~~~~~~LriL~~i~EEv~~ 162 (980)
T 3ibv_A 88 DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWNDFFASLQGVIAASSQ---S--EFSNFYLKVLLSIGDEIAD 162 (980)
T ss_dssp HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHHHHCC---H--HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCchHHHHHHHHhcCCCh---h--HHHHHHHHHHHHhHHHHHh
Confidence 5544211 11 345679999888888877776667888888877776654111 0 1122334445544444322
Q ss_pred CC-c-------------------chHHHHHHHHhhhC----CCCHHHHHHHHHhhHhhHhhcccch---HHHHHHHHHHH
Q 000143 1294 DD-P-------------------KVHAVVDKLLDVLN----TPSEAVQRAVSSCLSPLMQSMQDEA---PTLVSRLLDQL 1346 (2058)
Q Consensus 1294 ~~-p-------------------~i~~iv~~Ll~~L~----~~~~~V~~av~~~L~~l~~~~~~~~---~~~v~~Ll~~L 1346 (2058)
.+ + .++.+++..+..|. ..++.++..+.+|+..++.-.+... ..+++.++..+
T Consensus 163 ~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L 242 (980)
T 3ibv_A 163 SLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFL 242 (980)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHT
T ss_pred cccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHc
Confidence 11 0 02223444444442 2566777888899888887543221 46777777655
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHH--HHHH----hCCCCHHHHHHHHHHHHHHHHHhcc--------
Q 000143 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATL--REGL----ADRNSAKRREGALLAFECLCEKLGR-------- 1412 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L--~~~l----~~~~~~~~R~~al~al~~L~~~lg~-------- 1412 (2058)
. +...|..|+.||..++....... ....++..+ ...+ .++.|.+.+++....+..+++.+-.
T Consensus 243 ~---~~~~r~~A~ecL~ei~~k~~~~~-~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~ 318 (980)
T 3ibv_A 243 Q---IEELRCAACETMTEIVNKKMKPL-EKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSEL 318 (980)
T ss_dssp T---SHHHHHHHHHHHHHHHHSCCCHH-HHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred C---ChHHHHHHHHHHHHHHHcCCChh-hHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 3 37899999999999987543211 111223222 1212 1134666666554444444332111
Q ss_pred ------cchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh---h-----hh----HHhHHHHHHHhcc---CCC
Q 000143 1413 ------LFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS---A-----QG----VKLVLPSLLKGLE---DKA 1471 (2058)
Q Consensus 1413 ------~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~---~-----~~----v~~llp~Ll~~L~---~~~ 1471 (2058)
...+.+..+++.++.+++++++.|-..+..-+..+...+. . .. +..+++.++..+. +.+
T Consensus 319 ~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~ 398 (980)
T 3ibv_A 319 SPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQE 398 (980)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCC
T ss_pred chhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccc
Confidence 1226777899999999999999988877776666654321 1 11 2445555555553 112
Q ss_pred h-------------HHHHHHHHHHHHHHhhChhhHhhhhh-hHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhhcCchh
Q 000143 1472 W-------------RTKQSSVQLLGAMAYCAPQQLSQCLP-KIVPKLTEVLT---DTHPKVQSAGQTALQQVGSVIKNPE 1534 (2058)
Q Consensus 1472 ~-------------~~R~~a~~~Lg~la~~~p~~l~~~L~-~Iip~L~~~L~---D~~~~VR~aA~~aL~~l~~~~~~~~ 1534 (2058)
| ..|+....++..++...|+....++- .+.+.+.+.+. +.++..+++++.+|+.+++.+++..
T Consensus 399 ~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~ 478 (980)
T 3ibv_A 399 WDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPD 478 (980)
T ss_dssp CCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGG
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 2 23444445555555555655444222 33333444442 3468999999999999999776421
Q ss_pred HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhc-----CCCHHHHHHHHHHHHHHHhhhCC
Q 000143 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-----ERSAETKKKAAQIVGNMCSLVTE 1609 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~-----d~s~~vr~~A~~~l~~L~~~l~~ 1609 (2058)
.. . .+ ..+.+..+++.+...++ +..+.+|..++.++|..++.+..
T Consensus 479 ~~---------~-~~--------------------~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~ 528 (980)
T 3ibv_A 479 AF---------F-NE--------------------VDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY 528 (980)
T ss_dssp GT---------B-CS--------------------SSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT
T ss_pred cc---------c-Cc--------------------ccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 10 0 00 00112224444444433 67789999999999999987654
Q ss_pred CCchhhhHhhhhHHHHH--hhCCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccC----C----------
Q 000143 1610 PKDMIPYIGLLLPEVKK--VLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSD----N---------- 1670 (2058)
Q Consensus 1610 ~~~l~pyl~~ll~~L~~--~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d----~---------- 1670 (2058)
. ..|++.+++.+.. .+.++++.||..|+.++..+++.++.. |.+.++..+...|... .
T Consensus 529 ~---~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~ 605 (980)
T 3ibv_A 529 E---SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLN 605 (980)
T ss_dssp C---CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHH
T ss_pred C---chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchh
Confidence 2 2477888888888 788899999999999999999988765 4455555554444311 0
Q ss_pred ------ChHHHhhHHHHHHHHHHHhch--h----HHHHhhHHHHHhhc----cC----ChhHH-HHHHHHHHHhHHHhch
Q 000143 1671 ------SNVERSGAAQGLSEVLAALGT--V----YFEHILPDIIRNCS----HQ----RASVR-DGYLTLFKYLPRSLGV 1729 (2058)
Q Consensus 1671 ------~~~~R~~aa~~L~~i~~~~g~--~----~l~~llp~Ll~~l~----~~----~~~vR-~~al~~l~~la~~~g~ 1729 (2058)
..+.+.....++|.++...+. + +++.+++.++..+. .. +...+ ...+.+++.+++.+..
T Consensus 606 ~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~ 685 (980)
T 3ibv_A 606 SSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPA 685 (980)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCS
T ss_pred hhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCc
Confidence 012456688899999987652 1 56667766655443 11 11111 1346677888877642
Q ss_pred h------HHHhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhh
Q 000143 1730 Q------FQNYLQQVLPAILDGLA--DENESVRDAALGAGHVLVEHYATTSLPLLLPAVED 1782 (2058)
Q Consensus 1730 ~------f~pyl~~ilp~Ll~~L~--d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~ 1782 (2058)
. ....+..+++.++..+. ..++.||+.+..+++.++..++.. +..++|.+.+
T Consensus 686 ~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~-~~p~lp~~i~ 745 (980)
T 3ibv_A 686 RGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPD-MLPKVPQLIS 745 (980)
T ss_dssp CC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHH-HTTTHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHh-HHHHHHHHHH
Confidence 1 45567778888877776 457889999999999999888766 3334454443
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-09 Score=152.41 Aligned_cols=767 Identities=13% Similarity=0.099 Sum_probs=412.7
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh----h
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV----L 1208 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~----~ 1208 (2058)
+.++..+-+++...|+.|-+-|.. .+..|+.|.....-| .. +.+..+|..++..|+..... +
T Consensus 19 e~av~~ly~p~~~~r~~A~~~L~~-~q~sp~aw~~~~~iL-~~------------s~~~~vR~faa~~Lk~~I~~~W~~L 84 (1023)
T 4hat_C 19 DQVVSTFYQGSGVQQKQAQEILTK-FQDNPDAWQKADQIL-QF------------STNPQSKFIALSILDKLITRKWKLL 84 (1023)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHH-HHHCTTGGGGHHHHH-HH------------CCCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHhCCChHHHHHHHHHHHH-HHcCccHHHHHHHHh-cC------------CCCHHHHHHHHHHHHHHHHhhhhcC
Confidence 556666656666677777766654 445677776554444 21 12347888888888876553 3
Q ss_pred CCCChHHHHHHHHH---hhccCC-----CHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHH
Q 000143 1209 RTKDLPVIMTFLIS---RALADT-----NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGV 1280 (2058)
Q Consensus 1209 ~~~~~~~l~~~Li~---~~L~d~-----~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~a 1280 (2058)
+.++...+-..++. +...++ ...++.....+...++....++.|+.+++-+...+... . ...+.+
T Consensus 85 ~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~-----~--~~~~~~ 157 (1023)
T 4hat_C 85 PNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSS-----V--NVCENN 157 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTC-----H--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCC-----H--HHHHHH
Confidence 33333333333331 111222 35667777777777776665678999998888776431 1 345667
Q ss_pred HHHHHHHHhHhccC-CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHH
Q 000143 1281 VIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAA 1359 (2058)
Q Consensus 1281 v~~Lg~La~~l~~~-~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa 1359 (2058)
+..|..+.+.+... ...+ ...-+...-.. +...++..+..+...+....+......+.
T Consensus 158 L~iL~~L~EEV~~~~~~~l--------------~~~r~~~lk~~-------l~~~~~~I~~ll~~iL~~~~~~~l~~~~L 216 (1023)
T 4hat_C 158 MIVLKLLSEEVFDFSAEQM--------------TQAKALHLKNS-------MSKEFEQIFKLCFQVLEQGASSSLIVATL 216 (1023)
T ss_dssp HHHHHHHHHHHHTSCTTTS--------------CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccc--------------hHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77887777643220 0000 00000000011 11113334444444444445566777788
Q ss_pred HHHHHHHhhhCccccchhchHHHHH-HHHhCCCCHHHHHHHHHHHHHHHH-Hh-cc--cchhhHHHHHHHHHHH----cC
Q 000143 1360 FGLAGVVKGFGISSLKKYGIAATLR-EGLADRNSAKRREGALLAFECLCE-KL-GR--LFEPYVIQMLPLLLVA----FS 1430 (2058)
Q Consensus 1360 ~~L~~l~~~~g~~~l~~~~il~~L~-~~l~~~~~~~~R~~al~al~~L~~-~l-g~--~~~p~l~~llp~Ll~~----l~ 1430 (2058)
.++...+.-.....+...++++.+. ..+. ++..|+.|+.++..+.. .. +. .++..+..+++.++.. +-
T Consensus 217 ~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~---~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~ 293 (1023)
T 4hat_C 217 ESLLRYLHWIPYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVM 293 (1023)
T ss_dssp HHHHHHTTTSCTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHhcchhHHHHHHHHHcC---CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 8888877755444333447888888 7775 56789999998887764 12 11 1332333333332211 11
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhH------hhhhhhHHHHH
Q 000143 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL------SQCLPKIVPKL 1504 (2058)
Q Consensus 1431 D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l------~~~L~~Iip~L 1504 (2058)
......+. .+ ..-.+.+...-..-+.++..+.+.....+ .+.+...+..+
T Consensus 294 p~~~~l~~-----------------------~~-~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~L 349 (1023)
T 4hat_C 294 PVTADLKA-----------------------TY-ANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYL 349 (1023)
T ss_dssp CTTCCHHH-----------------------HH-HHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHH
T ss_pred CCcchHHH-----------------------HH-hccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence 11111110 00 00011111111122223322222211111 12222223345
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhcC---------chhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHh
Q 000143 1505 TEVLTDTHPKVQSAGQTALQQVGSVIK---------NPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575 (2058)
Q Consensus 1505 ~~~L~D~~~~VR~aA~~aL~~l~~~~~---------~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~ 1575 (2058)
+.+...++.+|-..++.-+..+++.+- .|.+..+++.++..+.-|.+.. .+....+.-..
T Consensus 350 l~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~-----------ive~d~~~~~~ 418 (1023)
T 4hat_C 350 IQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVL-----------VVENDEGEIVR 418 (1023)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCC-----------EEECTTSCEEE
T ss_pred HHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccc-----------cCCCCCccHHH
Confidence 555555677777777777777765321 2345677777777776664210 00000000000
Q ss_pred hHHHHHHHhhcCCCH-HHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCC--CCHHHHHHHHHHHHHHHHhhcc
Q 000143 1576 LLVPIVHRGLRERSA-ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVD--PIPEVRSVAARAIGSLIRGMGE 1652 (2058)
Q Consensus 1576 ~llp~L~~~L~d~s~-~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d--~~~~vR~~a~~aLg~l~~~lg~ 1652 (2058)
...+|.+. +.-+..-+++..++.+.++ + .++.+++.+.+.+.+ .+|..|+++.-|+|++++++.+
T Consensus 419 -------e~~~d~d~~~~f~~~Rd~L~~l~~l~~~--~---~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~ 486 (1023)
T 4hat_C 419 -------EFVKESDTIQLYKSEREVLVYLTHLNVI--D---TEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSE 486 (1023)
T ss_dssp -------CSSCCGGGHHHHHHHHHHHHHHHHHCHH--H---HHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCH
T ss_pred -------HhccchHHHHHHHHHHHHHHHHhccCHH--H---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCc
Confidence 00011110 0001111556666654221 2 344456666666654 6899999999999999987765
Q ss_pred c----CccchHHHHHhhccc----CCChHHHhhHHHHHHHHHHHhc--hhHHHHhhHHHHHhhccCChhHHHHHHHHHHH
Q 000143 1653 E----NFPDLVSWLLDALKS----DNSNVERSGAAQGLSEVLAALG--TVYFEHILPDIIRNCSHQRASVRDGYLTLFKY 1722 (2058)
Q Consensus 1653 ~----~~~~llp~L~~~L~~----d~~~~~R~~aa~~L~~i~~~~g--~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~ 1722 (2058)
+ ++++++|.|++.+.. |....+|..+++.+|.+.+.+. +++++.+++.++..+.++++.+...++.+|..
T Consensus 487 ~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~ 566 (1023)
T 4hat_C 487 DTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIK 566 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 3 567888888776643 2334466677888988877664 34788999999999988899999999999999
Q ss_pred hHHHhchhHH--------HhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc-----chhchHHhHhhhcC----
Q 000143 1723 LPRSLGVQFQ--------NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIF---- 1785 (2058)
Q Consensus 1723 la~~~g~~f~--------pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~-----~l~~llp~L~~~l~---- 1785 (2058)
++...+..+. ||++.++..+...+.+-.+.-+..+.+|++.++...+.. .++.+++.+...+.
T Consensus 567 l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~ 646 (1023)
T 4hat_C 567 IVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVE 646 (1023)
T ss_dssp HHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHH
Confidence 9999888774 699999998888887777777788999999998876533 22223332221110
Q ss_pred ----CCC-HHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHH---HHHHH---HHh--
Q 000143 1786 ----NDN-WRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE---VLAAL---YMV-- 1852 (2058)
Q Consensus 1786 ----d~~-~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~---vL~~L---~~~-- 1852 (2058)
+.+ |. -......+..++. ....+...+|..+... ++..+ |..
T Consensus 647 ~~~~~~~~~~-d~~~~~~l~~il~------------------------~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s 701 (1023)
T 4hat_C 647 QSTANPTLLL-DSETVKIIANIIK------------------------TNVAVCTSMGADFYPQLGHIYYNMLQLYRAVS 701 (1023)
T ss_dssp HHHHCTTGGG-CHHHHHHHHHHHH------------------------HHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCchhhc-CHHHHHHHHHHHH------------------------HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 0000111111111 1112233444333221 11111 110
Q ss_pred ------------hcCCCH------HHHHHHHHHHHHHHhhCh---hhHHHhHHHHHHHHHHHhcCCCHHHH-HHHHHHHH
Q 000143 1853 ------------RSDVSL------SVRQAALHVWKTIVANTP---KTLKEIMPVLMNTLISSLASSSSERR-QVAGRALG 1910 (2058)
Q Consensus 1853 ------------~~D~~~------~VR~aA~~~l~~lv~~~~---~~l~~~l~~L~~~l~~~L~~~~~~~R-~~A~~~Lg 1910 (2058)
...... .+|+..+..+...+...+ .....++|.+++.++.-.....+..| .....+++
T Consensus 702 ~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s 781 (1023)
T 4hat_C 702 SMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMT 781 (1023)
T ss_dssp HHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHH
T ss_pred HHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHH
Confidence 011112 234444555555554332 12344567776666654333333333 23567778
Q ss_pred HHHHHhCcchh---hchHHHH----hhhcCC---CChhHHHHHHHHHHHHHHhhChhhhH---hHHhhHHHHHHHHhcCC
Q 000143 1911 ELVRKLGERVL---PSIIPIL----SRGLKD---PSASRRQGVCIGLSEVMASAGKSQLL---SFMDELIPTIRTALCDS 1977 (2058)
Q Consensus 1911 ~L~~~lg~~~l---~~llp~L----~~~l~d---~~~~vR~~a~~aL~eii~~~~~~~l~---~~~~~ll~~L~~~L~D~ 1977 (2058)
.++.++|..+. +.++..+ .+++++ +.|+.|.....-+..+...+...-+. +....++..+.-++..+
T Consensus 782 ~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~ 861 (1023)
T 4hat_C 782 TVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN 861 (1023)
T ss_dssp HHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 88888886532 2222221 223433 47999999888888887776442221 13355777777788899
Q ss_pred CHHHHHHHHHHHHHHHHHhCh------------hhHHHHHHHHHHhcCCCc
Q 000143 1978 ILEVRESAGLAFSTLFKSAGM------------QAIDEIVPTLLHALEDDQ 2016 (2058)
Q Consensus 1978 d~~VR~~Aa~a~~~l~~~~g~------------~~~~~ilp~Ll~~L~~~~ 2016 (2058)
+++|-+.+...+-.+.+++.. .+.-.++..++..+.|..
T Consensus 862 ~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~~~~~~~~~~~~~~v~td~~ 912 (1023)
T 4hat_C 862 NRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSD 912 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred chHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 999999988888777654432 123345555666666643
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-12 Score=169.58 Aligned_cols=476 Identities=12% Similarity=0.059 Sum_probs=305.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~l 1459 (2058)
...+.+.+.++ +...|..+..++..++ ... ......++..+.+.+.|+++.+|..|..+++.+. .++..+.+
T Consensus 72 ~~~vik~~~s~-~~~~Krl~Yl~~~~~~---~~~-~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~~~~~~l 143 (618)
T 1w63_A 72 QLECLKLIASQ-KFTDKRIGYLGAMLLL---DER-QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SSEMCRDL 143 (618)
T ss_dssp HHHHHHHHHSS-SHHHHHHHHHHHHHHC---CCC-HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CHHHHHHH
T ss_pred HHHHHHHHcCC-chHHHHHHHHHHHHHh---CCC-cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CHHHHHHH
Confidence 33444556655 6777776655444333 211 1223457788888999999999999999998885 34445788
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhHHh
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEIAS 1537 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i~~ 1537 (2058)
+|.+.+.+.+.++.+|+.|+.+++.+....|+.+. .+++.+..+++|.++.|+.+|+.+|..++..-.+ ..+..
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~ 219 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRK 219 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 99999999999999999999999999998886543 5667777889999999999999999999864221 13456
Q ss_pred HHHHHHhccCC---------------CChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhc------CCCHHHHHH
Q 000143 1538 LVPTLLMGLTD---------------PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLR------ERSAETKKK 1595 (2058)
Q Consensus 1538 lvp~Ll~~l~d---------------~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~------d~s~~vr~~ 1595 (2058)
++|.++..+.+ +++..+ ..++.++.. .. .+......+.+.+.+.+. +.+..+...
T Consensus 220 ~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l--~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~e 296 (618)
T 1w63_A 220 LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRIL--GR-NDDDSSEAMNDILAQVATNTETSKNVGNAILYE 296 (618)
T ss_dssp THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHH--TT-TCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 67766654432 233333 344444431 11 111112334445544432 234567777
Q ss_pred HHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHH
Q 000143 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675 (2058)
Q Consensus 1596 A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R 1675 (2058)
++.++..+. .. .......++.+...+.++++++|..|..+++.++..-+ +.+.+..+.++..+. |++..+|
T Consensus 297 a~~~i~~l~----~~---~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-~~~~~~~~~i~~~l~-d~d~~Ir 367 (618)
T 1w63_A 297 TVLTIMDIK----SE---SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-NAVQRHRSTIVDCLK-DLDVSIK 367 (618)
T ss_dssp HHHHHHHSC----CC---HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-HHHGGGHHHHHHGGG-SSCHHHH
T ss_pred HHHHHHhcC----CC---HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-HHHHHHHHHHHHHcc-CCChhHH
Confidence 777776542 21 11223467778888888999999999999999997543 334556667777777 5566689
Q ss_pred hhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHH
Q 000143 1676 SGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRD 1755 (2058)
Q Consensus 1676 ~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~ 1755 (2058)
..+...+..++. ...++.+++.+...+.+.+..+|..++.+++.++..+...+..|++. +++.+.+....++.
T Consensus 368 ~~alelL~~l~~---~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~----ll~lL~~~~~~v~~ 440 (618)
T 1w63_A 368 RRAMELSFALVN---GNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDT----IMRVLTTAGSYVRD 440 (618)
T ss_dssp HHHHHHHHHHCC---SSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHH----HHHHHHHTGGGSCS
T ss_pred HHHHHHHHHHcc---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHH----HHHHHHhccchhHH
Confidence 998888877654 22356788888888888999999999999999999887766666554 44555544455666
Q ss_pred HHHHHHHHHHHHhcccchhchHHhHhhhcCC--CCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCC--CcchHHHHH
Q 000143 1756 AALGAGHVLVEHYATTSLPLLLPAVEDGIFN--DNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDE--GASTEAHGR 1831 (2058)
Q Consensus 1756 ~a~~al~~lv~~~~~~~l~~llp~L~~~l~d--~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~--~~~~e~~~~ 1831 (2058)
.+...+..++..+.+- -...++.+.+.+.+ .+......++.++|++...+.... .++++ .......
T Consensus 441 ~~~~~l~~ii~~~p~l-~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~-------~~~~~~~~~~~~~~-- 510 (618)
T 1w63_A 441 DAVPNLIQLITNSVEM-HAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQ-------CEEEEPIQVTEDEV-- 510 (618)
T ss_dssp SHHHHHHHHHHHSCST-HHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCC-------CSSSCCCCCCHHHH--
T ss_pred HHHHHHHHHHhcChhH-HHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccc-------cccccccCCCHHHH--
Confidence 6777777777665421 22244455544442 234555678999999854332100 00000 0001111
Q ss_pred HHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1832 AIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGE 1911 (2058)
Q Consensus 1832 ~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~ 1911 (2058)
.+.+..+.... ..+..+|..++..+..+....|.. . +.+...+-.+..+.+.++|+-|...+.-
T Consensus 511 -----------~~~l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~~~-~---~~l~~~L~~~~~~~d~evrdRA~~y~~l 574 (618)
T 1w63_A 511 -----------LDILESVLISN-MSTSVTRGYALTAIMKLSTRFTCT-V---NRIKKVVSIYGSSIDVELQQRAVEYNAL 574 (618)
T ss_dssp -----------HHHHHHHHHST-TCCHHHHHHHHHHHHHHHTTCSSC-H---HHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhCcch-H---HHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 11222222111 456789998888887777666532 2 3333334445678889999988877654
Q ss_pred H
Q 000143 1912 L 1912 (2058)
Q Consensus 1912 L 1912 (2058)
+
T Consensus 575 l 575 (618)
T 1w63_A 575 F 575 (618)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=162.55 Aligned_cols=193 Identities=18% Similarity=0.231 Sum_probs=165.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-cccchhchHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcccchhhHH
Q 000143 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SSLKKYGIAATLREGLA-DRNSAKRREGALLAFECLCEKLGRLFEPYVI 1419 (2058)
Q Consensus 1342 Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~-~~l~~~~il~~L~~~l~-~~~~~~~R~~al~al~~L~~~lg~~~~p~l~ 1419 (2058)
+++.+ .+.+|..|++|+.+|..++++.+. ..-....+++.+...+. +. +..+|.+|+.+++.++..+|..|.+|+.
T Consensus 20 l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 20 FYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444 567899999999999999987432 11112378888988885 65 9999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhC-hh-hHhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-PQ-QLSQCL 1497 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~-p~-~l~~~L 1497 (2058)
.++|.++..++|.++.||.+|..++..++...+ ++.++|.+...+.+++|++|..++..++.++... |+ ...+++
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~---~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS---LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH
Confidence 999999999999999999999999999987654 5788999999999999999999999999977665 55 367899
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHH
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLV 1539 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lv 1539 (2058)
+.++|.+.++++|+++.||.+|..+++.++..+++..+..++
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l 216 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLL 216 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGG
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 999999999999999999999999999999998865444433
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.8e-13 Score=160.03 Aligned_cols=196 Identities=18% Similarity=0.213 Sum_probs=168.9
Q ss_pred hcCCCHHHHHHHHHHHHH-HHhhhCcc---ccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-ccch-hhHHH
Q 000143 1347 MKSDKYGERRGAAFGLAG-VVKGFGIS---SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLG-RLFE-PYVIQ 1420 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~-l~~~~g~~---~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg-~~~~-p~l~~ 1420 (2058)
..+.+|..|++|...|.. ++.+...- ......++..|.+.+.++.|..+|..|+.+++.++++++ ..|. +|...
T Consensus 25 l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~ 104 (249)
T 2qk1_A 25 ITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL 104 (249)
T ss_dssp HTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH
Confidence 356789999999999999 88653211 111236788888899544599999999999999999999 8899 99999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh---h-HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhCh---hhH
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ---G-VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP---QQL 1493 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~---~-v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p---~~l 1493 (2058)
++|.++..++|..+.||+++..++..++...++. . ++.+++.++..+++++|++|.+++..|+.++...+ ..+
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l 184 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTL 184 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhH
Confidence 9999999999999999999999999999987542 2 56889999999999999999999999999998877 678
Q ss_pred hhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHH
Q 000143 1494 SQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTL 1542 (2058)
Q Consensus 1494 ~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~L 1542 (2058)
.+++ +.++|.+.++++|+++.||.+|..+++.++..+++..+..+++.+
T Consensus 185 ~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 185 QRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 8999 999999999999999999999999999999999986665555543
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-12 Score=165.02 Aligned_cols=377 Identities=14% Similarity=0.126 Sum_probs=272.0
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hhH--HhHHHHHHHhccC-CChHHHHHHHHHHHHHHhhChhhHhh
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~v--~~llp~Ll~~L~~-~~~~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2058)
++-+++.+..+++.++..|..+++.+...-.. +.+ ..++|.|++.|.. ++...+..|+.+|+.++.+.++....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566778888999999999999988643222 222 3579999999974 55889999999999999877765333
Q ss_pred hh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhccCCCChh------HHHHHHHHHhcc
Q 000143 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDILLQTT 1564 (2058)
Q Consensus 1496 ~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~~------vr~al~~L~~~~ 1564 (2058)
.. ...+|.|+.+|.++++.||..|+++|+.++....+ ..+ ...++.++..+..++.. .|.+..++....
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 22 25899999999999999999999999999864221 111 35678888888776532 234444444311
Q ss_pred c--cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh--hHhhhhHHHHHhhCCCCHHHHHHHH
Q 000143 1565 F--VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAA 1640 (2058)
Q Consensus 1565 f--~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p--yl~~ll~~L~~~l~d~~~~vR~~a~ 1640 (2058)
. ...........++|.|.+.+.+.+.+++..++.++.+++.. . .+... .-..++|.|..++.++++.++..++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~--~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al 295 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--P-NERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--C-HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhc--h-hhhHHHHHhcccchhhhhhhcCCChhhhhHHH
Confidence 1 11112223456889999999999999999999999998752 2 11111 1235789999999999999999999
Q ss_pred HHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh--H--HHHhhHHHHHhhccCChhH
Q 000143 1641 RAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y--FEHILPDIIRNCSHQRASV 1712 (2058)
Q Consensus 1641 ~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~--~--l~~llp~Ll~~l~~~~~~v 1712 (2058)
.+++.++..-... .-...++.|...|.+ .+..+|..++++|+.++...... . -..++|.++..+.+.+..+
T Consensus 296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 374 (510)
T 3ul1_B 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT 374 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred HHHHHhhcCCHHHHHHHhhccchHHHHHHhcC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHH
Confidence 9999987532221 113466777777764 55668999999999987543221 1 1458899999999999999
Q ss_pred HHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----c----hh--chHHhH
Q 000143 1713 RDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----S----LP--LLLPAV 1780 (2058)
Q Consensus 1713 R~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----~----l~--~llp~L 1780 (2058)
|..+++++.+++.....+...|+ ..++|+|+..|...++.++..+++++..++...... . +. ..+..|
T Consensus 375 ~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~i 454 (510)
T 3ul1_B 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454 (510)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHH
Confidence 99999999999876544433444 347899999999999999999999999887543211 0 11 134566
Q ss_pred hhhcCCCCHHHHHHHHHHHHHH
Q 000143 1781 EDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1781 ~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
+....+++..|+..|..++...
T Consensus 455 e~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 455 EALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHH
Confidence 7777889999999999888776
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-11 Score=162.23 Aligned_cols=378 Identities=14% Similarity=0.126 Sum_probs=273.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hhH--HhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhhHh
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~v--~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~ 1494 (2058)
.++.++..+..+++..+..|..++..+...-.. +.+ ..++|.|++.|. +++...+..|+.+|+.++.+.+....
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 456677788888999999999988887643222 122 468999999997 45688999999999999988766533
Q ss_pred hh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhccCCCChh------HHHHHHHHHhc
Q 000143 1495 QC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDILLQT 1563 (2058)
Q Consensus 1495 ~~-L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~~------vr~al~~L~~~ 1563 (2058)
.. -...+|.|+.++.++++.||..|+++|+.++..-.+ ..+ ...++.|+..+.+++.. .|.+..++...
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 236 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 236 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence 22 236899999999999999999999999999864211 111 35678888888876532 23344444331
Q ss_pred c-c-cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh--hHhhhhHHHHHhhCCCCHHHHHHH
Q 000143 1564 T-F-VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVA 1639 (2058)
Q Consensus 1564 ~-f-~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p--yl~~ll~~L~~~l~d~~~~vR~~a 1639 (2058)
. . ...........++|.|.+.+.+.+.+++..++.++.+++.. . .+... .-..++|.|..++.++++.++..+
T Consensus 237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~--~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a 313 (529)
T 3tpo_A 237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--P-NERIEMVVKKGVVPQLVKLLGATELPIVTPA 313 (529)
T ss_dssp HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS--C-HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhh--h-hhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence 1 1 11112223456889999999999999999999999998762 2 22111 123578999999999999999999
Q ss_pred HHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh--H-H-HHhhHHHHHhhccCChh
Q 000143 1640 ARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRAS 1711 (2058)
Q Consensus 1640 ~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~--~-l-~~llp~Ll~~l~~~~~~ 1711 (2058)
+.+++.++..-... .-...++.|...|.+ .+..+|..++++|+.++.+-... . . ..++|.++..+.+.+..
T Consensus 314 ~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~-~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 314 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHHccchHHHHHHhhcccHHHHHHHHcC-CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH
Confidence 99999997532211 123577778888874 55668999999999987543221 1 1 35889999999999999
Q ss_pred HHHHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc----c----hh--chHHh
Q 000143 1712 VRDGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATT----S----LP--LLLPA 1779 (2058)
Q Consensus 1712 vR~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~----~----l~--~llp~ 1779 (2058)
+|..+++++++++.....+-..|+ ..++|+|+..|...++.++..+++++..++...... . +. ..+..
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 472 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 472 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH
Confidence 999999999999876544433444 247999999999999999999999998887543211 0 11 13556
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1780 VEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1780 L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
|+....+++..|+..|..++...
T Consensus 473 ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 473 IEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH
Confidence 77777889999999999888876
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-11 Score=164.05 Aligned_cols=480 Identities=13% Similarity=0.100 Sum_probs=302.6
Q ss_pred hhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1453 AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1453 ~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
++.+....+.+++.+.+++...|+.+...+..++...++.+ --+++.+.+-++|+++.+|..|+.+|+.+.. .
T Consensus 69 G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~---~ 141 (621)
T 2vgl_A 69 GHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI----RLINNAIKNDLASRNPTFMGLALHCIANVGS---R 141 (621)
T ss_dssp SCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC---H
T ss_pred CCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC---H
Confidence 44555677888899999999999999999998887776543 3566778888999999999999999999854 3
Q ss_pred hhHHhHHHHHHhcc--CCCChhHH-HHHHHHHhccccccCChhhHh--hHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1533 PEIASLVPTLLMGL--TDPNDHTK-YSLDILLQTTFVNTVDAPSLA--LLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l--~d~~~~vr-~al~~L~~~~f~~~~~~~~l~--~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
...+.++|.+.+.+ .|+++++| .|+-++...- ..+..... .+++.+...+.|+++.|+..|..++..++..
T Consensus 142 e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~---~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~- 217 (621)
T 2vgl_A 142 EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLY---RTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQK- 217 (621)
T ss_dssp HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHH---HHCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH---HhChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHh-
Confidence 35588999999999 99999998 4544444310 01111122 5788889999999999999999999988873
Q ss_pred CCCCchhhhHhhhhHHHHHhhCCC-------------CHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCC-
Q 000143 1608 TEPKDMIPYIGLLLPEVKKVLVDP-------------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDN- 1670 (2058)
Q Consensus 1608 ~~~~~l~pyl~~ll~~L~~~l~d~-------------~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~- 1670 (2058)
++..+.++.+.++..|.+++.+. ++-.+-...+.++.++..-.++ .+.++++.++..+...+
T Consensus 218 -~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 218 -NPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPK 296 (621)
T ss_dssp -CHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred -ChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcc
Confidence 44556667777777777665432 4566766666666554211111 22234444443322111
Q ss_pred -------C--hHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHH
Q 000143 1671 -------S--NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2058)
Q Consensus 1671 -------~--~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~ 1741 (2058)
+ ..+...++.++-.+. -..+........+...+.++++.+|-.++..+..++...+. .+++....+.
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~--~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~ 372 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHD--SEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIET 372 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHH
T ss_pred cccccccchHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHH
Confidence 0 012222222222211 11224556677777778888999999999999998876542 1233444566
Q ss_pred HHHhcc-CCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCC
Q 000143 1742 ILDGLA-DENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD 1820 (2058)
Q Consensus 1742 Ll~~L~-d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e 1820 (2058)
++..+. |++..||..+++.+..++ .+..++.++..|.+.+.+.+..+|..++..++.+..+....
T Consensus 373 i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~----------- 438 (621)
T 2vgl_A 373 VINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVD----------- 438 (621)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSS-----------
T ss_pred HHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc-----------
Confidence 677788 999999998888876664 33456778888888888888899999999999886443210
Q ss_pred CCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCC--
Q 000143 1821 DEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSS-- 1898 (2058)
Q Consensus 1821 ~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~-- 1898 (2058)
.+.....+.+.+. ...+ .+...+...+..++.+.+..-...+ ..+...+.++.
T Consensus 439 -----~~~~v~~Ll~ll~-------------~~~~---~v~~ev~~~l~~ii~~~~~~~~~~~----~~l~~~l~~~~~~ 493 (621)
T 2vgl_A 439 -----YTWYVDTILNLIR-------------IAGD---YVSEEVWYRVIQIVINRDDVQGYAA----KTVFEALQAPACH 493 (621)
T ss_dssp -----THHHHHHHHHHHH-------------HHGG---GSCSHHHHHHHHHHGGGCSCHHHHH----HHHHHHHTSSSCC
T ss_pred -----HHHHHHHHHHHHH-------------hhcc---cchHHHHHHHHHHHhCChhHHHHHH----HHHHHHHcCccch
Confidence 1112222222221 1111 1112222333334433332111122 22334455543
Q ss_pred HHHHHHHHHHHHHHHHHhCcc--hh-hchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhc
Q 000143 1899 SERRQVAGRALGELVRKLGER--VL-PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALC 1975 (2058)
Q Consensus 1899 ~~~R~~A~~~Lg~L~~~lg~~--~l-~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~ 1975 (2058)
..+-..++..+|+.+...... .. .+++..+.+.+.+.++.+|..+..++..+....+ + .. +.+...+.....
T Consensus 494 ~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p-~-~~---~~i~~~l~~~~~ 568 (621)
T 2vgl_A 494 ENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFP-E-VK---ATIQDVLRSDSQ 568 (621)
T ss_dssp HHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCG-G-GH---HHHHHHHSSHHH
T ss_pred HHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHCh-H-HH---HHHHHHHHHHhc
Confidence 345566779999987765432 11 2556667666777889999998888887766542 2 11 334444444555
Q ss_pred --CCCHHHHHHHHHHHHHH
Q 000143 1976 --DSILEVRESAGLAFSTL 1992 (2058)
Q Consensus 1976 --D~d~~VR~~Aa~a~~~l 1992 (2058)
|.|++||+.|..-..-+
T Consensus 569 ~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 569 LKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HSCSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 99999999998765554
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.9e-13 Score=156.82 Aligned_cols=199 Identities=19% Similarity=0.275 Sum_probs=162.3
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcCc---
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKN--- 1532 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~--- 1532 (2058)
..+-+.+.+.+.+.+|+.|++|+..|+.++.++++.....+..+++.+...+. |++..||..|+.+++.++..++.
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34445688888999999999999999999998766555566789999999995 99999999999999999998875
Q ss_pred hhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCC
Q 000143 1533 PEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~vr~-al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~ 1611 (2058)
+++..++|.++..+.|++..+|+ +..++... ... ..+..++|.+...++++++.+|..++.+++.+....+...
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~--~~~---~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAI--YAS---TSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHH--HTT---SCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HHc---CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 67899999999999999999984 33333221 111 1256789999999999999999999999998765422212
Q ss_pred chhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHH
Q 000143 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2058)
Q Consensus 1612 ~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp 1660 (2058)
.+.+|++.++|.+...+.|++++||..|..+++.++..+|++.+..+++
T Consensus 169 ~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 169 LNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred ccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 4678999999999999999999999999999999999999864444443
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-11 Score=159.39 Aligned_cols=387 Identities=15% Similarity=0.129 Sum_probs=263.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhC---ccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000143 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2058)
Q Consensus 1339 v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g---~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~ 1415 (2058)
++.+++.+. +++...+..|.+.+..++..-. .+.+....++|.|.+.+.+.+++..+..|..+++.|+.+-.+.-.
T Consensus 59 i~~~v~~l~-s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 59 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344444443 3346666666666666554221 112223468899999998776889999999999999854332222
Q ss_pred hhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCCh-----HHHHHHHHHHHHH
Q 000143 1416 PYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAM 1485 (2058)
Q Consensus 1416 p~l~-~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~-----~~R~~a~~~Lg~l 1485 (2058)
..+. ..+|.++..+.++++.||+.|.++|+.++...+.. .+ ...++.++..+.+.+. .....++.++..+
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 2222 47899999999999999999999999998654332 12 3468888888876543 3456678888888
Q ss_pred HhhCh-hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000143 1486 AYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2058)
Q Consensus 1486 a~~~p-~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2058)
+.+.. ..-......++|.|..++.+.++.|+..|+++|..++..-. +.. ..+.
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~--~~~---------------------~~i~--- 271 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---------------------EMVV--- 271 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH--HHH---------------------HHHH---
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchh--hhH---------------------HHHH---
Confidence 86532 22223446789999999999999999999999999875311 100 0000
Q ss_pred ccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh-hHhhhhHHHHHhhCCCCHHHHHHHHHHH
Q 000143 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAI 1643 (2058)
Q Consensus 1565 f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p-yl~~ll~~L~~~l~d~~~~vR~~a~~aL 1643 (2058)
...++|.+...+.+.+..++..++.++++++.. +...... .-...++.|..++.+++..+|..++.+|
T Consensus 272 ---------~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL 340 (510)
T 3ul1_B 272 ---------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340 (510)
T ss_dssp ---------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHH
T ss_pred ---------hcccchhhhhhhcCCChhhhhHHHHHHHHhhcC--CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHH
Confidence 012456667777777888888888899988752 2111111 1124677777888899999999999999
Q ss_pred HHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHH-----HHhhHHHHHhhccCChhHHH
Q 000143 1644 GSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRD 1714 (2058)
Q Consensus 1644 g~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l-----~~llp~Ll~~l~~~~~~vR~ 1714 (2058)
+.++..-... .-..++|.|++.+.+ .+..+|..++++|+.++.....+.. ...++.+...+.++++.++.
T Consensus 341 ~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~ 419 (510)
T 3ul1_B 341 SNITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQ 419 (510)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHcCcHHHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHH
Confidence 9997533221 123688999998885 4566899999999998876544432 35788999999999999999
Q ss_pred HHHHHHHHhHHHh---ch--hHHHhHHH--HHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000143 1715 GYLTLFKYLPRSL---GV--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1715 ~al~~l~~la~~~---g~--~f~pyl~~--ilp~Ll~~L~d~~~~VR~~a~~al~~l 1764 (2058)
.++.++..+.... |. .+..++.. .+..+..+..+++++|++.|...+...
T Consensus 420 ~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 420 VILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999998887643 21 22222322 355666667788999988877665543
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.45 E-value=8.1e-11 Score=154.61 Aligned_cols=386 Identities=14% Similarity=0.121 Sum_probs=263.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc---cccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchh
Q 000143 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEP 1416 (2058)
Q Consensus 1340 ~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~---~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p 1416 (2058)
+.+++.+. +++...+..|...+..++..-.. +.+....++|.|.+.+....++..+..|..++..++.+-......
T Consensus 79 ~~lv~~l~-s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 79 EDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHT-SSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33444333 33455566666666555432111 112234788999999977668899999999999998643321122
Q ss_pred hHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCCh-----HHHHHHHHHHHHHH
Q 000143 1417 YVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1417 ~l~-~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~-----~~R~~a~~~Lg~la 1486 (2058)
.+. ..+|.++..+.++++.||+.|.++|+.++...+.. .+ ...++.++..+.+.+. .....++.++..++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 222 47899999999999999999999999997543322 12 3468889888876543 34566788888887
Q ss_pred hhChh-hHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccc
Q 000143 1487 YCAPQ-QLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTF 1565 (2058)
Q Consensus 1487 ~~~p~-~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f 1565 (2058)
.+... .-......++|.|..++.+.++.|+..|+++|..++..-. +.. ..+.
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~--~~~---------------------~~v~---- 290 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN--ERI---------------------EMVV---- 290 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH--HHH---------------------HHHH----
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh--hhH---------------------HHHH----
Confidence 65422 2223446789999999999999999999999999876321 100 0000
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh-hHhhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1566 ~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p-yl~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
...++|.+...+.+.+..++..++.++++++.. +...... .-...++.|..++.++++.+|..|+.+|+
T Consensus 291 --------~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~--~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 291 --------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp --------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred --------hccchHHHHHHhcCCChhHHHHHHHHHHHHHcc--chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 012456667777778888888899999988752 2111111 12357788899999999999999999999
Q ss_pred HHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHH-----HHhhHHHHHhhccCChhHHHH
Q 000143 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVRDG 1715 (2058)
Q Consensus 1645 ~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l-----~~llp~Ll~~l~~~~~~vR~~ 1715 (2058)
.++..-... .-..++|.++..+.+ .+..+|..++++|+.++.....+.. ..+++.+...+.++++.++..
T Consensus 361 nl~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~ 439 (529)
T 3tpo_A 361 NITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439 (529)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred HHhcccHHHHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHH
Confidence 998632221 123588999998885 4566899999999998876544432 347889999999999999999
Q ss_pred HHHHHHHhHHHh---ch--hHHHhHHH--HHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000143 1716 YLTLFKYLPRSL---GV--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1716 al~~l~~la~~~---g~--~f~pyl~~--ilp~Ll~~L~d~~~~VR~~a~~al~~l 1764 (2058)
++.++..+.... |. .+..++.. .+..+..+..+++++|++.|...+...
T Consensus 440 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 440 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999998887643 21 22222221 245555666788999998887666543
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-09 Score=141.65 Aligned_cols=498 Identities=14% Similarity=0.070 Sum_probs=307.4
Q ss_pred CHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcC
Q 000143 1351 KYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFS 1430 (2058)
Q Consensus 1351 ~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~ 1430 (2058)
+...|+.+..-+-.+. ..|.+.- .....+.+.+.++ +...|..+..++..+++.- ...+.-++..+.+.+.
T Consensus 51 ~~~~k~~~l~Kli~l~-~~G~d~s---~~~~~vvkl~~s~-~~~~Krl~YL~l~~~~~~~----~e~~~L~iN~l~kDl~ 121 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIF-LLGHDID---FGHMEAVNLLSSN-RYTEKQIGYLFISVLVNSN----SELIRLINNAIKNDLA 121 (621)
T ss_dssp CHHHHHHHHHHHHHHH-HHSCCCC---SCHHHHHHGGGCS-CHHHHHHHHHHHHHSCCCC----HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HcCCCCc---hhHHHHHHHhcCC-CHHHHHHHHHHHHHHccCC----cHHHHHHHHHHHHhcC
Confidence 3444554444333322 2454332 2344455567766 7888887777666555322 2334556778888999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhc--cCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh
Q 000143 1431 DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL--EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2058)
Q Consensus 1431 D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L--~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L 1508 (2058)
|+++.+|-.|..+++.+. .++-.+.++|.+.+.+ .|.++.+|+.|+.++..+....|+.+.. +.+++.+.++|
T Consensus 122 ~~n~~ir~lALr~L~~i~---~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL 196 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVG---SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLL 196 (621)
T ss_dssp SCCHHHHHHHHHHHHHHC---CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHT
T ss_pred CCCHHHHHHHHHHhhccC---CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHh
Confidence 999999999999998873 3455588899999999 8999999999999999999988866542 37788889999
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCc---hhHHhHHHHHHhccCCC-------------ChhHH-HHHHHHHhccccccCCh
Q 000143 1509 TDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDP-------------NDHTK-YSLDILLQTTFVNTVDA 1571 (2058)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~-------------~~~vr-~al~~L~~~~f~~~~~~ 1571 (2058)
+|+++.|+.+|+.++..++..-+. +.++.++..|.+.+.+. ++-.+ ..++.+.. +....+.
T Consensus 197 ~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~--~~~~~d~ 274 (621)
T 2vgl_A 197 NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQC--YPPPEDP 274 (621)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGG--SSSCSSH
T ss_pred CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHH--hCCCCCH
Confidence 999999999999999999875322 12333444443333211 23333 34555443 2221122
Q ss_pred hhHhhHHHHHHHhh---cC---------CC--HHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHH
Q 000143 1572 PSLALLVPIVHRGL---RE---------RS--AETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRS 1637 (2058)
Q Consensus 1572 ~~l~~llp~L~~~L---~d---------~s--~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~ 1637 (2058)
.....+...+.+.+ .+ .+ ..+..+++.++-.+. . ..++....+..|...+.++++++|.
T Consensus 275 ~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~----~---~~~~~~~~~~~L~~~L~~~~~niry 347 (621)
T 2vgl_A 275 AVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD----S---EPNLLVRACNQLGQFLQHRETNLRY 347 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC----C---CHHHHHHHHHHHHHHSSCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC----C---cHHHHHHHHHHHHHHhcCCCcchHH
Confidence 22222333333332 11 12 255555555554432 1 2345667788888888889999999
Q ss_pred HHHHHHHHHHHhhc-ccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHH
Q 000143 1638 VAARAIGSLIRGMG-EENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGY 1716 (2058)
Q Consensus 1638 ~a~~aLg~l~~~lg-~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~a 1716 (2058)
.+..++..++...+ .+.+....+.++..|+.+++..+|..+...+..++ ..+.++.++..+...+.+.+...|..+
T Consensus 348 ~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~~ 424 (621)
T 2vgl_A 348 LALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREEI 424 (621)
T ss_dssp HHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999986543 13455666777777774555668887777766554 344678899999999999999999999
Q ss_pred HHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCC--HHHHHH
Q 000143 1717 LTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDN--WRIRQS 1794 (2058)
Q Consensus 1717 l~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~--~~vR~s 1794 (2058)
+..++.++..+...+.-|++.++..+-. ....+...+...+..++..... .-...+..+.+.+.++. ..+-..
T Consensus 425 v~~I~~la~k~~~~~~~~v~~Ll~ll~~----~~~~v~~ev~~~l~~ii~~~~~-~~~~~~~~l~~~l~~~~~~~~li~~ 499 (621)
T 2vgl_A 425 VLKVAILAEKYAVDYTWYVDTILNLIRI----AGDYVSEEVWYRVIQIVINRDD-VQGYAAKTVFEALQAPACHENLVKV 499 (621)
T ss_dssp HHHHHHHHHHHCSSTHHHHHHHHHHHHH----HGGGSCSHHHHHHHHHHGGGCS-CHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHh----hcccchHHHHHHHHHHHhCChh-HHHHHHHHHHHHHcCccchHHHHHH
Confidence 9999999988777666666655555433 2223444445555555543321 11123334444444432 344455
Q ss_pred HHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1795 SVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN 1874 (2058)
Q Consensus 1795 av~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~ 1874 (2058)
++.++|+....+.. .++... .+++..++....+.+..||..++..+..+...
T Consensus 500 ~~wilGEy~~~~~~------------~~~~~p----------------~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~ 551 (621)
T 2vgl_A 500 GGYILGEFGNLIAG------------DPRSSP----------------LIQFNLLHSKFHLCSVPTRALLLSTYIKFVNL 551 (621)
T ss_dssp HHHHHHHHTHHHHS------------STTSCH----------------HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHhcc------------cCCCCH----------------HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 56777776322110 000000 02233444445567788998888777777665
Q ss_pred ChhhHHHhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 000143 1875 TPKTLKEIMPVLMNTLISSLA--SSSSERRQVAGRALGE 1911 (2058)
Q Consensus 1875 ~~~~l~~~l~~L~~~l~~~L~--~~~~~~R~~A~~~Lg~ 1911 (2058)
.|.. .+.+...+-.+.. +.+.++|+-|.+...-
T Consensus 552 ~p~~----~~~i~~~l~~~~~~~~~d~evrdRA~~y~~L 586 (621)
T 2vgl_A 552 FPEV----KATIQDVLRSDSQLKNADVELQQRAVEYLRL 586 (621)
T ss_dssp CGGG----HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHH
T ss_pred ChHH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 5532 2222222223334 7888888877766543
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-11 Score=145.24 Aligned_cols=199 Identities=10% Similarity=0.204 Sum_probs=161.7
Q ss_pred HHHHhccCCChHHHHHHHHHHHH-HHhhChhhH--hhhhhhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhcC----c-
Q 000143 1462 SLLKGLEDKAWRTKQSSVQLLGA-MAYCAPQQL--SQCLPKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSVIK----N- 1532 (2058)
Q Consensus 1462 ~Ll~~L~~~~~~~R~~a~~~Lg~-la~~~p~~l--~~~L~~Iip~L~~~L-~D~~~~VR~aA~~aL~~l~~~~~----~- 1532 (2058)
.+.+.+.+++|..|++|+..|+. ++.++++.. ...+..++..+.+.+ +|+|..||..|+++++.+++.++ .
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35567789999999999999999 988777655 445568899999999 89999999999999999999887 2
Q ss_pred hhHHhHHHHHHhccCCCChhHHH----HHHHHHhccccccCC-hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1533 PEIASLVPTLLMGLTDPNDHTKY----SLDILLQTTFVNTVD-APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~vr~----al~~L~~~~f~~~~~-~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
+|...++|.++..+.|....+++ |+.++... ..... .+++..+++.+...+++.+|.+|..++.+++.++...
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~--~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY--YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH--SCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--ccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 67889999999999999887763 44444431 11111 1236679999999999999999999999999988753
Q ss_pred CCC-CchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHH
Q 000143 1608 TEP-KDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL 1662 (2058)
Q Consensus 1608 ~~~-~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L 1662 (2058)
+.. ..+.+|+ +.++|.+...+.|++++||..|..+++.++..+|++.+..+++.|
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 221 4577899 999999999999999999999999999999999987555555543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-11 Score=144.98 Aligned_cols=248 Identities=17% Similarity=0.121 Sum_probs=153.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~l 1459 (2058)
++.+.+.+.++ ++.+|..|+.+++.+.. ...++.+...+.|+++.||..|..+++.+.. ....+..+
T Consensus 25 i~~L~~~L~~~-~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~--~~~~~~~l 91 (280)
T 1oyz_A 25 DDELFRLLDDH-NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKI--CKKCEDNV 91 (280)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCC--CTTTHHHH
T ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHccCC----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcc--ccccchHH
Confidence 55666666665 77888887777766541 2466777777888888888888887776532 12234445
Q ss_pred HHHHHH-hccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000143 1460 LPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2058)
Q Consensus 1460 lp~Ll~-~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~l 1538 (2058)
++.+.+ .+.++++.+|..++.+||.+....+. +.+.+++.+...++|+++.||..|+.+|+.++. ...
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-------~~~ 160 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KAT 160 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-------HHH
Confidence 555553 35677788888888888877654432 224567777777888888888888888877654 235
Q ss_pred HHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH
Q 000143 1539 VPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2058)
Q Consensus 1539 vp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl 1617 (2058)
+|.|...+.|++..+| .++.+++.... . -...+|.+...++|.++.+|..|+.+++.++ +
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~----~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----~-------- 221 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININKY---D----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D-------- 221 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTC---C----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C--------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhcc---C----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----C--------
Confidence 6667777777777776 45555543210 0 1235566666677777777777777766653 1
Q ss_pred hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHH
Q 000143 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 1679 (2058)
Q Consensus 1618 ~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa 1679 (2058)
+..++.|...+.|++ +|..++.+++.+.. +..+|.|.+.+.++.+...+..+.
T Consensus 222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~-------~~~~~~L~~~l~~~~~~~~~~~~~ 274 (280)
T 1oyz_A 222 KRVLSVLCDELKKNT--VYDDIIEAAGELGD-------KTLLPVLDTMLYKFDDNEIITSAI 274 (280)
T ss_dssp GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC-------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc-------hhhhHHHHHHHhcCCCcHHHHHHH
Confidence 124555666666643 66777777766532 356666666665444443333333
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-10 Score=140.30 Aligned_cols=251 Identities=14% Similarity=0.103 Sum_probs=191.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhH
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKI 1500 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~I 1500 (2058)
.++.++..+.|+++.||..|..+++.+.. +..++.+...+.++++.+|..++.+|+.+.... ...+.+
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~-----~~~~~l 91 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK-----KCEDNV 91 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT-----TTHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc-----ccchHH
Confidence 46778888999999999999999987741 356788889999999999999999999875321 123456
Q ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHH
Q 000143 1501 VPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2058)
Q Consensus 1501 ip~L~-~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~ll 1578 (2058)
++.+. .+++|+++.||..++++|+.++.... .....+++.+...+.|++..+| .++.+++.... ...+
T Consensus 92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---------~~~~ 161 (280)
T 1oyz_A 92 FNILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---------KATI 161 (280)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---------HHHH
Confidence 66665 35789999999999999999985421 2345788999999999999998 67777775211 1267
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccch
Q 000143 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDL 1658 (2058)
Q Consensus 1579 p~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~l 1658 (2058)
|.+...++|.++.+|..|+..++.+.. + -+..++.+...+.|+++.||..++.+|+.+. -+..
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~---~-------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~-------~~~~ 224 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININKY---D-------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRV 224 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTC---C-------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhcc---C-------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-------CHhh
Confidence 888889999999999999999988742 1 1346788888999999999999999999875 2467
Q ss_pred HHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhcc-CChhHHHHHHHHH
Q 000143 1659 VSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH-QRASVRDGYLTLF 1720 (2058)
Q Consensus 1659 lp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~-~~~~vR~~al~~l 1720 (2058)
+|.|...+.++ + +|..++.+|+.+ |. +..+|.+...+.+ +++.++..++..+
T Consensus 225 ~~~L~~~l~d~-~--vr~~a~~aL~~i----~~---~~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 225 LSVLCDELKKN-T--VYDDIIEAAGEL----GD---KTLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp HHHHHHHHTSS-S--CCHHHHHHHHHH----CC---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhcCc-c--HHHHHHHHHHhc----Cc---hhhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 88888888742 2 788888888875 33 3677778777765 3556655555444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-07 Score=125.79 Aligned_cols=362 Identities=16% Similarity=0.157 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhC---CCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhccc
Q 000143 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV---DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668 (2058)
Q Consensus 1592 vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~---d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~ 1668 (2058)
.+..|+..+|.+-. ++.++ .+..|...+. ..++.+|..|+-++|.+..+.+. +.+..|.+.|.+
T Consensus 374 ~k~sA~aSLGlIh~--g~~~~-------gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~~~~lL~~~L~~ 440 (963)
T 4ady_A 374 AKFTATASLGVIHK--GNLLE-------GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----DTTDYLKNIIVE 440 (963)
T ss_dssp HHHHHHHHHHHHTS--SCTTT-------HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcc--CchHH-------HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHcC
Confidence 45666677776654 33222 2333333333 56789999999999999877664 356666666664
Q ss_pred CC-------ChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHH
Q 000143 1669 DN-------SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPA 1741 (2058)
Q Consensus 1669 d~-------~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~ 1741 (2058)
+. ...+|.+++.+||.+..+.|.+ ++++.|...+.+.+..+|..+..++|-+-..-|.. ..+..++..
T Consensus 441 ~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e---ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--~ai~~LL~~ 515 (963)
T 4ady_A 441 NSGTSGDEDVDVLLHGASLGIGLAAMGSANI---EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--EAIHDMFTY 515 (963)
T ss_dssp HSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH--HHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH--HHHHHHHHH
Confidence 43 2568889999999876666554 45555566666667777877777777654333432 233333333
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhc-CCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCC
Q 000143 1742 ILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGI-FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSD 1820 (2058)
Q Consensus 1742 Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l-~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e 1820 (2058)
+. .+.++.+|..+.-+++.+. ++.. ...+.+.+.+ .+.++-+|..++-.+|-- + +|...
T Consensus 516 ~~---e~~~e~vrR~aalgLGll~--~g~~---e~~~~li~~L~~~~dp~vRygaa~alglA-y--aGTGn--------- 575 (963)
T 4ady_A 516 SQ---ETQHGNITRGLAVGLALIN--YGRQ---ELADDLITKMLASDESLLRYGGAFTIALA-Y--AGTGN--------- 575 (963)
T ss_dssp HH---HCSCHHHHHHHHHHHHHHT--TTCG---GGGHHHHHHHHHCSCHHHHHHHHHHHHHH-T--TTSCC---------
T ss_pred Hh---ccCcHHHHHHHHHHHHhhh--CCCh---HHHHHHHHHHHhCCCHHHHHHHHHHHHHH-h--cCCCC---------
Confidence 33 4667889999888888663 3222 1233333333 357899999988777642 1 11100
Q ss_pred CCCcchHHHHHHHHHHhChhhHHHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcCCCH
Q 000143 1821 DEGASTEAHGRAIIEVLGRDKRNEVLAA-LYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS 1899 (2058)
Q Consensus 1821 ~~~~~~e~~~~~l~~~Lg~~~~~~vL~~-L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~~~~ 1899 (2058)
. ..++. |..+..|.+..||++|+..++.+....+ +..+.++..+ ..+.++
T Consensus 576 ------~----------------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~----e~v~rlv~~L---~~~~d~ 626 (963)
T 4ady_A 576 ------N----------------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY----TTVPRIVQLL---SKSHNA 626 (963)
T ss_dssp ------H----------------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC----SSHHHHTTTG---GGCSCH
T ss_pred ------H----------------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH----HHHHHHHHHH---HhcCCH
Confidence 0 11121 1223457778899999888887654433 3344444433 457899
Q ss_pred HHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcC--C
Q 000143 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD--S 1977 (2058)
Q Consensus 1900 ~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D--~ 1977 (2058)
.+|..|+.++|.++..-+ .+.++..|....+|++..||++++.+||.+..+... ...|.+.+++..+.+...| .
T Consensus 627 ~VR~gAalALGli~aGn~---~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn-a~~~rva~~l~~L~~~~~dk~~ 702 (963)
T 4ady_A 627 HVRCGTAFALGIACAGKG---LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE-KLNPQVADINKNFLSVITNKHQ 702 (963)
T ss_dssp HHHHHHHHHHHHHTSSSC---CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT-TTCTTHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHhccCCC---cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc-ccchHHHHHHHHHHHHHhcccc
Confidence 999999999998863222 356777888888999999999999999977665533 3345566777777777766 5
Q ss_pred CHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhhc
Q 000143 1978 ILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDD--QTSDTALDGLKQILSVR 2032 (2058)
Q Consensus 1978 d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~--~~~~~al~aL~~i~~~~ 2032 (2058)
|+.+|-.|.-|.|-+. .|...+. ++...++ ..+..++-||..+....
T Consensus 703 d~~~~fga~iAqGll~--aG~~n~t------is~~~s~~~~~~~~a~~Gl~~f~q~w 751 (963)
T 4ady_A 703 EGLAKFGACVAQGIMN--AGGRNVT------IQLENADTGTLDTKSVVGLVMFSQFW 751 (963)
T ss_dssp CHHHHHHHHHHHHHHT--TGGGTEE------ECSBCTTTCCBCHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHh--cCCCceE------EEeeeccCCCCCHHHHHHHHHHHHHH
Confidence 7889999998888875 4443110 0111121 13567777777666544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=99.29 E-value=8e-08 Score=127.56 Aligned_cols=307 Identities=11% Similarity=0.051 Sum_probs=205.1
Q ss_pred HHHHHHHcC---CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCC--------hHHHHHHHHHHHHHHhhCh
Q 000143 1422 LPLLLVAFS---DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA--------WRTKQSSVQLLGAMAYCAP 1490 (2058)
Q Consensus 1422 lp~Ll~~l~---D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~--------~~~R~~a~~~Lg~la~~~p 1490 (2058)
+..+-+.+. .+++.+|..|+-+++.+......+ ++..|.+.+.+.+ ..+|.+|+..||-+..+..
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 444444554 457889999999999886544432 3444555554333 6789999999998765543
Q ss_pred hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch-hHHhHHHHHHhccCCCChhHH-HHHHHHHhcccccc
Q 000143 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNT 1568 (2058)
Q Consensus 1491 ~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~ 1568 (2058)
. +++++.|.+.+.|.+..+|..|+.+||.+.-..++. .++.++..+.. +.++.+| .+.-.|+-+.+...
T Consensus 470 ~------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e---~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 470 N------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE---TQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp C------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTCG
T ss_pred C------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc---cCcHHHHHHHHHHHHhhhCCCh
Confidence 2 256667777888878888999999999875444444 44666666554 4445554 44445543222221
Q ss_pred CChhhHhhHHHHHHH-hhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhH-HHHHhhCCCCHHHHHHHHHHHHHH
Q 000143 1569 VDAPSLALLVPIVHR-GLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLP-EVKKVLVDPIPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1569 ~~~~~l~~llp~L~~-~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~-~L~~~l~d~~~~vR~~a~~aLg~l 1646 (2058)
. ..+.+.+ ...+.++.+|..++-+++.-+...++ ...++ .|..+..|.+..||..|+.+||.+
T Consensus 541 ---e----~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn--------~~aIq~LL~~~~~d~~d~VRraAViaLGlI 605 (963)
T 4ady_A 541 ---E----LADDLITKMLASDESLLRYGGAFTIALAYAGTGN--------NSAVKRLLHVAVSDSNDDVRRAAVIALGFV 605 (963)
T ss_dssp ---G----GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC--------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred ---H----HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC--------HHHHHHHHHHhccCCcHHHHHHHHHHHHhh
Confidence 1 2233333 33568899999988777754432222 12333 333344588899999999999987
Q ss_pred HHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHH
Q 000143 1647 IRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726 (2058)
Q Consensus 1647 ~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~ 1726 (2058)
. +|+ ++.+|.+++.|..+.++.+|.+++.++|.+..+-|. .+++..|.....|++..||.+++.+++.+...
T Consensus 606 ~--~g~---~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 606 L--LRD---YTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL---QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp T--SSS---CSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred c--cCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc---HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 5 343 256777888777777888999999999988766554 35666666777899999999999999988765
Q ss_pred hchhHHHhHHHHHHHHHHhccC--CCHHHHHHHHHHHHHH
Q 000143 1727 LGVQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1727 ~g~~f~pyl~~ilp~Ll~~L~d--~~~~VR~~a~~al~~l 1764 (2058)
..+...|.+..++..+.+...| +++..|-.+.-|.+.+
T Consensus 678 tnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 678 QTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 5554445677777778887765 5677887777666654
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-07 Score=126.72 Aligned_cols=371 Identities=13% Similarity=0.158 Sum_probs=220.0
Q ss_pred HhhhhHHHHHhhC--CCCHHHHHHHHHHHHHHHHhhcc----cCccchHHHHHhhcccCC----ChHHHhhHHHHHHHHH
Q 000143 1617 IGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGE----ENFPDLVSWLLDALKSDN----SNVERSGAAQGLSEVL 1686 (2058)
Q Consensus 1617 l~~ll~~L~~~l~--d~~~~vR~~a~~aLg~l~~~lg~----~~~~~llp~L~~~L~~d~----~~~~R~~aa~~L~~i~ 1686 (2058)
...+++.+.+.+. ..+|..++++.-|+|+++..+.+ .+++.+++.|+....... ...++......+|...
T Consensus 475 ~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~ 554 (1073)
T 3gjx_A 475 EIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYP 554 (1073)
T ss_dssp HHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhH
Confidence 3345666665544 35799999999999999877654 267788888876654322 2223444445677666
Q ss_pred HHhc--hhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhH--------HHhHHHHHHHHHHhccCCCHHHHHH
Q 000143 1687 AALG--TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQF--------QNYLQQVLPAILDGLADENESVRDA 1756 (2058)
Q Consensus 1687 ~~~g--~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f--------~pyl~~ilp~Ll~~L~d~~~~VR~~ 1756 (2058)
+.+. .++++.++..+++.+.++++.|+++++.+|..++...+..| .||++.++..+.....+-.+.-...
T Consensus 555 ~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ 634 (1073)
T 3gjx_A 555 RFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT 634 (1073)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5543 44789999999999999999999999999999999888766 4688888888777777666666667
Q ss_pred HHHHHHHHHHHhcccc-----hhchHHhHhhhcCCCCHHHHH-------------HHHHHHHHHHHHhhCCcccccccCC
Q 000143 1757 ALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQ-------------SSVELLGDLLFKVAGTSGKALLEGG 1818 (2058)
Q Consensus 1757 a~~al~~lv~~~~~~~-----l~~llp~L~~~l~d~~~~vR~-------------sav~ll~~Ll~~~~g~~~k~~~~~~ 1818 (2058)
..+|++.++...+... ++.++|..... |.--. ..+.-+..++.
T Consensus 635 lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~-----w~~l~~~~~~~~~~~~d~~~i~~l~~il~-------------- 695 (1073)
T 3gjx_A 635 FYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQV-----WDSIIQQATKNVDILKDPETVKQLGSILK-------------- 695 (1073)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHH-----HHHHHHHHHHCGGGGGCHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH-----HHHHHHHhhcCchhccChHHHHHHHHHHh--------------
Confidence 7888888887765432 22222222111 11000 00111111111
Q ss_pred CCCCCcchHHHHHHHHHHhChhhHHH---HHH---HHHHhh--------------cCCCH------HHHHHHHHHHHHHH
Q 000143 1819 SDDEGASTEAHGRAIIEVLGRDKRNE---VLA---ALYMVR--------------SDVSL------SVRQAALHVWKTIV 1872 (2058)
Q Consensus 1819 ~e~~~~~~e~~~~~l~~~Lg~~~~~~---vL~---~L~~~~--------------~D~~~------~VR~aA~~~l~~lv 1872 (2058)
....+...+|..+... +.. .+|... ..... .+|...+..+...+
T Consensus 696 ----------~n~~v~~~~g~~f~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i 765 (1073)
T 3gjx_A 696 ----------TNVRACKAVGHPFVIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWV 765 (1073)
T ss_dssp ----------HHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------hhHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 1122334445443321 111 111110 01112 24444455555555
Q ss_pred hhCh---hhHHHhHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHhCcchh---hchHHHH----hhhcC---CCChh
Q 000143 1873 ANTP---KTLKEIMPVLMNTLISSLASSSSERR-QVAGRALGELVRKLGERVL---PSIIPIL----SRGLK---DPSAS 1938 (2058)
Q Consensus 1873 ~~~~---~~l~~~l~~L~~~l~~~L~~~~~~~R-~~A~~~Lg~L~~~lg~~~l---~~llp~L----~~~l~---d~~~~ 1938 (2058)
...+ .....++|.+++.++.--....+..| .....++..++.++|.... +.++..+ .++++ .+.|+
T Consensus 766 ~~~~~~~~v~~~~i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe 845 (1073)
T 3gjx_A 766 SRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPE 845 (1073)
T ss_dssp TTCSCHHHHHHHTSHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHH
T ss_pred hcCCCHHHHHHHhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcH
Confidence 4332 12345667777666653333222223 2356778888888887543 3333222 22343 34699
Q ss_pred HHHHHHHHHHHHHHhhChhhhH---hHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh----------hhHHHHH
Q 000143 1939 RRQGVCIGLSEVMASAGKSQLL---SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM----------QAIDEIV 2005 (2058)
Q Consensus 1939 vR~~a~~aL~eii~~~~~~~l~---~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~----------~~~~~il 2005 (2058)
.|.....-+..+...+-..-+. +....++..+.-++...+++|-+.+...+-.+.+++.. .+.-.++
T Consensus 846 ~r~~ff~ll~~~~~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~~~~~~~ 925 (1073)
T 3gjx_A 846 HRTNFFLLLQAVNSHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQTYFCDIL 925 (1073)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Confidence 9999888788777765332211 23356777777788899999999998888888766542 1333556
Q ss_pred HHHHHhcCCCc
Q 000143 2006 PTLLHALEDDQ 2016 (2058)
Q Consensus 2006 p~Ll~~L~~~~ 2016 (2058)
..++..+.|..
T Consensus 926 ~~i~~v~td~~ 936 (1073)
T 3gjx_A 926 QHIFSVVTDTS 936 (1073)
T ss_dssp HHHHHHHTCTT
T ss_pred HHHHHHHhCch
Confidence 66666677654
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-08 Score=145.88 Aligned_cols=522 Identities=14% Similarity=0.111 Sum_probs=284.1
Q ss_pred HHHHHHhhhcCC--ChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcCCC
Q 000143 1058 EVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGYD 1127 (2058)
Q Consensus 1058 ~l~~ll~~l~~~--~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~~~ 1127 (2058)
++.+++..+.+| ++++|.+|.+.|++.... +........+. ...+.+..+|..|.. .|...+.+
T Consensus 12 ~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-----p~~~~~~~~~L-~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e 85 (1204)
T 3a6p_A 12 QLVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-----CPICVPCGLRL-AEKTQVAIVRHFGLQILEHVVKFRWNGMSRL 85 (1204)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-----CTTHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHHSGGGSCHH
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-----chHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 577788888888 778899999999876411 11112222222 234556778877754 36544333
Q ss_pred CCCCH-HhHHHHhcC-------CCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHH
Q 000143 1128 FGTDY-SGLFKALSH-------SNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIA 1198 (2058)
Q Consensus 1128 ~~~~~-~~ll~~l~~-------~~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~ 1198 (2058)
....+ ..+++.+.+ ....||+..+++++.++. .+|+.|++++..|.+.... +...+.++.
T Consensus 86 ~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~~~-----------~~~~~e~~L 154 (1204)
T 3a6p_A 86 EKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQ-----------GETQTELVM 154 (1204)
T ss_dssp HHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHHT-----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhcC-----------CHHHHHHHH
Confidence 33345 667776642 468999999999999986 4788898888888876531 123577788
Q ss_pred HHHHHhhhh-hCCCC----------------hHHHHHHHHHhhccC-------------------CCHHHHHHHHHHHHH
Q 000143 1199 LALHSAADV-LRTKD----------------LPVIMTFLISRALAD-------------------TNADVRGRMLNAGIM 1242 (2058)
Q Consensus 1199 ~al~~l~~~-~~~~~----------------~~~l~~~Li~~~L~d-------------------~~~~VR~~al~a~~~ 1242 (2058)
.+|..+++- ...+. .+.++..+. ..+.+ .+..++..++++...
T Consensus 155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~-~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~ 233 (1204)
T 3a6p_A 155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLL-NTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAG 233 (1204)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHH-HHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHH
Confidence 888887653 22111 112323221 11211 112233333333322
Q ss_pred HHHhhCccch----hhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHH
Q 000143 1243 IIDKHGRDNV----SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQR 1318 (2058)
Q Consensus 1243 ~i~~~g~~~~----~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~ 1318 (2058)
++.--+...+ ..+++.+...+.+ . .+|..|+++|..++..-.+ + .. ...++..+.
T Consensus 234 ~l~Wi~~~~i~~~~~~ll~~l~~~l~~------~--~lr~~A~ecL~~i~s~~~~--~--~~-~~~li~~l~-------- 292 (1204)
T 3a6p_A 234 YIDWVSMSHITAENCKLLEILCLLLNE------Q--ELQLGAAECLLIAVSRKGK--L--ED-RKPLMVLFG-------- 292 (1204)
T ss_dssp TTTTSCHHHHHTTTSHHHHHHHHGGGC------T--TTHHHHHHHHHHHHTCCSC--H--HH-HGGGGGGGS--------
T ss_pred HHhccCHHHHHhccchHHHHHHHHcCC------H--HHHHHHHHHHHHHHhCCCC--h--hh-HHHHHHHHh--------
Confidence 2211111010 1255555444332 1 3566677777766642110 0 00 000111110
Q ss_pred HHHHhhHhhHhhcccchHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHH-------hhh----CccccchhchH
Q 000143 1319 AVSSCLSPLMQSMQDEAPTLVSRLLDQLM-------KSDKYGERRGAAFGLAGVV-------KGF----GISSLKKYGIA 1380 (2058)
Q Consensus 1319 av~~~L~~l~~~~~~~~~~~v~~Ll~~L~-------~~~~~~vR~~Aa~~L~~l~-------~~~----g~~~l~~~~il 1380 (2058)
...+..+++... .++++..++.-+..+..+. ... ....+ ..++
T Consensus 293 -----------------~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l--~~~l 353 (1204)
T 3a6p_A 293 -----------------DVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNF--GKYL 353 (1204)
T ss_dssp -----------------HHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTH--HHHH
T ss_pred -----------------hHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHH--HHHH
Confidence 011112222211 0011222222222222221 110 11111 2677
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHh----cccchhhHHHHHHHH---HHHcCC-----------------CC---
Q 000143 1381 ATLREGLADRNSAKRREGALLAFECLCEKL----GRLFEPYVIQMLPLL---LVAFSD-----------------QV--- 1433 (2058)
Q Consensus 1381 ~~L~~~l~~~~~~~~R~~al~al~~L~~~l----g~~~~p~l~~llp~L---l~~l~D-----------------~~--- 1433 (2058)
+.+.....++ +..+-..++..+..+.+.. ...+.+++.++++.+ +..+.- .+
T Consensus 354 ~~lL~~t~~~-~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~ 432 (1204)
T 3a6p_A 354 ESFLAFTTHP-SQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDF 432 (1204)
T ss_dssp HHHHHHHTSS-CHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHH
T ss_pred HHHHHHHhCc-cHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHH
Confidence 8888777765 5555555555555454432 134667888888888 333211 01
Q ss_pred ----HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhcc-------------------------CCChHHHHHHHHHHHH
Q 000143 1434 ----VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-------------------------DKAWRTKQSSVQLLGA 1484 (2058)
Q Consensus 1434 ----~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~-------------------------~~~~~~R~~a~~~Lg~ 1484 (2058)
...|....+.++.++...+..++..+.+.+.+.+. +..|....+....+++
T Consensus 433 ~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~lea 512 (1204)
T 3a6p_A 433 NAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLES 512 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHH
Confidence 13577777788888777666666555555544332 2346666777777777
Q ss_pred HHhhChhhH-hhhhh-hHHHHHHHHh---cCCCHHHHHHHHHHHHHHHhhcC-ch-hHHhHHHHHHhccCCCCh-hHHHH
Q 000143 1485 MAYCAPQQL-SQCLP-KIVPKLTEVL---TDTHPKVQSAGQTALQQVGSVIK-NP-EIASLVPTLLMGLTDPND-HTKYS 1556 (2058)
Q Consensus 1485 la~~~p~~l-~~~L~-~Iip~L~~~L---~D~~~~VR~aA~~aL~~l~~~~~-~~-~i~~lvp~Ll~~l~d~~~-~vr~a 1556 (2058)
+++++.... .++++ .++|.++..+ +..+|.+|..++.+++.++..+. +| ++..++..++..+.++.. ..+
T Consensus 513 v~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~-- 590 (1204)
T 3a6p_A 513 VITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESK-- 590 (1204)
T ss_dssp HHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTT--
T ss_pred HHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCccccc--
Confidence 776653322 23333 2445555543 45689999999999999998765 22 455566655555433110 000
Q ss_pred HHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCC---H
Q 000143 1557 LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPI---P 1633 (2058)
Q Consensus 1557 l~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~---~ 1633 (2058)
. +. .+.+.++|..|+.++..+|.. -+..+.||++.+...+..++.... .
T Consensus 591 -------------~-~~------------~~~~k~vr~~a~~al~~L~~~--~~~~L~p~~~~i~~~~~~~l~~~~~l~~ 642 (1204)
T 3a6p_A 591 -------------A-PR------------TRAVRNVRRHACSSIIKMCRD--YPQLVLPNFDMLYNHVKQLLSNELLLTQ 642 (1204)
T ss_dssp -------------S-CC------------CHHHHHHHHHHHHHHHHHHHH--CHHHHGGGHHHHHHHHHHHHHSTTTSCH
T ss_pred -------------c-cc------------cHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhCcccccH
Confidence 0 00 001247889999999999984 345788999999999888876433 5
Q ss_pred HHHHHHHHHHHHHHHhhccc-----CccchHHHHHhhccc
Q 000143 1634 EVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKS 1668 (2058)
Q Consensus 1634 ~vR~~a~~aLg~l~~~lg~~-----~~~~llp~L~~~L~~ 1668 (2058)
.-+.....+++.++..+++. ++..+++.+++.+.+
T Consensus 643 ~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~ 682 (1204)
T 3a6p_A 643 MEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS 682 (1204)
T ss_dssp HHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 55677788888887655443 466677777777653
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-10 Score=135.89 Aligned_cols=256 Identities=10% Similarity=0.038 Sum_probs=181.7
Q ss_pred HHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHHHHhhcCCCCCCCHHhHHHH
Q 000143 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKA 1138 (2058)
Q Consensus 1059 l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~~~~~~~~~~~ll~~ 1138 (2058)
...|+..+.+|.|++|++|..+|+++.+..+.. .+.. ...+.|-.+|-+.--..+..| ++
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~G-------AGR~--~~~N~DLAvRLLCVLALDRFG-----------DY 235 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNG-------GDIQ--IRVDSKLFSKIYEILVTDKFN-----------DF 235 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC--CCCCTTHHHHHHHHHHHBCCB-----------BC
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccC-------Ccee--ccccHHHHHHHHHHHHhcccc-----------cc
Confidence 356788999999999999999999987544211 1111 111112233322222233322 34
Q ss_pred hcCC-CHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCChHHHH
Q 000143 1139 LSHS-NYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM 1217 (2058)
Q Consensus 1139 l~~~-~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~~~~l~ 1217 (2058)
++|. .+.||+++||+|+.+ ..-|+.+ .++..|.. .+ ....|++|+|++.+++++...+.. .+.++
T Consensus 236 VSDqVVAPVRETaAQtLGaL-~hLp~e~-~IL~qLV~----~l------~~~~WEVRHGGLLGLKYL~DLL~~--Ld~Vv 301 (800)
T 3oc3_A 236 VDDRTVAPVRDAAAYLLSRI-YPLIGPN-DIIEQLVG----FL------DSGDWQVQFSGLIALGYLKEFVED--KDGLC 301 (800)
T ss_dssp SSSSCBCHHHHHHHHHHHHH-TTTSCSC-CHHHHHTT----GG------GCSCHHHHHHHHHHHHHTGGGCCC--HHHHH
T ss_pred ccCeeeeehHHHHHHHHHHH-HhCChhH-HHHHHHHh----hc------CCCCeeehhhhHHHHHHHHHHHHH--HHHHH
Confidence 5544 679999999999999 6656552 34444432 11 136799999999999999555442 77888
Q ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcc
Q 000143 1218 TFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK 1297 (2058)
Q Consensus 1218 ~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~ 1297 (2058)
+.++ .||+|.+++||..+.+++..++ .++.++.++.+++.+|.+- ++-+ .....++.+|..++.+-.... .
T Consensus 302 ~aVL-~GL~D~DDDVRAVAAetLiPIA---~p~~l~~LL~iLWd~L~~L--DDLS--ASTgSVMdLLAkL~s~p~~a~-~ 372 (800)
T 3oc3_A 302 RKLV-SLLSSPDEDIKLLSAELLCHFP---ITDSLDLVLEKCWKNIESE--ELIS--VSKTSNLSLLTKIYRENPELS-I 372 (800)
T ss_dssp HHHH-HHTTCSSHHHHHHHHHHHTTSC---CSSTHHHHHHHHHHHHHTC--CSCC--TTHHHHHHHHHHHHHHCTTCC-C
T ss_pred HHHH-hhcCCcccHHHHHHHHHhhhhc---chhhHHHHHHHHHHHhhhh--cccc--hhhHHHHHHHHHHHcCCcccc-c
Confidence 8876 7999999999999998877766 4577899999999999863 2111 224567999999998643211 1
Q ss_pred hHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000143 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLA 1363 (2058)
Q Consensus 1298 i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~ 1363 (2058)
.+.++|+|...|.++...||.++.+++..+. ....++.+++++.-+++..++..+.+.+.
T Consensus 373 dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL------~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 373 PPERLKDIFPCFTSPVPEVRTSILNMVKNLS------EESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp CSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2388999999999999999999999988876 45688889999888888999988777663
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.7e-10 Score=125.68 Aligned_cols=186 Identities=19% Similarity=0.208 Sum_probs=134.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPK 1499 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~ 1499 (2058)
..++.++..+.|+++.+|..|..+++.+.. +..+|.+.+.+.++++.+|..++.+|+.+.. +.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~ 81 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----------ER 81 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HH
Confidence 456777888899999999999988887632 3567888888899999999999999988752 35
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHH
Q 000143 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLV 1578 (2058)
Q Consensus 1500 Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~ll 1578 (2058)
.++.+...++|+++.||..|+++|+.++. ...++.|...+.|++..+| .++.+++.... ...+
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~ 145 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------ERAV 145 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---------HHHH
Confidence 67788888999999999999999988864 2356777777788877776 56666654211 1245
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2058)
Q Consensus 1579 p~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l 1650 (2058)
|.+...++|.++.+|..++.+++.+.. +..++.|..++.|+++.||..|..+|+.+....
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 667777777777788777777776532 235666666677777778888777777766543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.4e-10 Score=124.72 Aligned_cols=189 Identities=19% Similarity=0.202 Sum_probs=153.6
Q ss_pred chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhH
Q 000143 1414 FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493 (2058)
Q Consensus 1414 ~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l 1493 (2058)
+.++-....+.++..++|+++.+|..|..+++.+.. ...++.+.+.+.++++.+|..++.+|+.+..
T Consensus 8 ~~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 8 HHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CCCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred ccccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 344455778889999999999999999999987642 2467888899999999999999999998742
Q ss_pred hhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChh
Q 000143 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAP 1572 (2058)
Q Consensus 1494 ~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~ 1572 (2058)
+..++.+...++|+++.||..|+++|+.++. ...++.+...+.|++..+| .++.+++...
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------- 135 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-------ERAVEPLIKALKDEDWFVRIAAAFALGEIG-------- 135 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHT--------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------
Confidence 2567888889999999999999999999864 2467778888899999888 5777776521
Q ss_pred hHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000143 1573 SLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2058)
Q Consensus 1573 ~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~ 1647 (2058)
....++.+...++|.++.+|..|+.+++.+. + +..++.|..++.|+++.||..|..+|+.+.
T Consensus 136 -~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 -DERAVEPLIKALKDEDGWVRQSAADALGEIG----G--------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----S--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----c--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 1236788888999999999999999998873 2 246777888888999999999999998754
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-08 Score=118.62 Aligned_cols=237 Identities=19% Similarity=0.134 Sum_probs=175.2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhh--
Q 000143 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI-QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG-- 1455 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~-~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~-- 1455 (2058)
.++.+.+.+.++ ++..|..|+.++..++..........+. ..+|.++..+.++++.+|..|..++..++...+...
T Consensus 3 ~i~~L~~~L~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 3 DVEKLVKLLTST-DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 467777788776 6899999999999887654322222222 488999999999999999999999999975422211
Q ss_pred H--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1456 V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1456 v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~-~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
+ ...+|.++..+.+++..+|..++.+|+.++...++.... .-...+|.+.+.+.++++.+|..|+++|+.++...
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~-- 159 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-- 159 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--
Confidence 1 357899999999999999999999999999765543221 11368999999999999999999999999997631
Q ss_pred hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCc
Q 000143 1533 PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKD 1612 (2058)
Q Consensus 1533 ~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~ 1612 (2058)
+... + .+. -...+|.+...+.+.++.+|..++.++++++. +++..
T Consensus 160 ~~~~-----------------~----~~~------------~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~ 204 (252)
T 4hxt_A 160 DEAI-----------------K----AIV------------DAGGVEVLVKLLTSTDSEVQKEAARALANIAS--GPTSA 204 (252)
T ss_dssp HHHH-----------------H----HHH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--SBHHH
T ss_pred HHHH-----------------H----HHH------------HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHH
Confidence 1110 0 000 01256677777777788899999999999875 22221
Q ss_pred hhhh-HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1613 MIPY-IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1613 l~py-l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
.... -...++.+..++.++++.+|..|..+|+.++...+..
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 1111 1357899999999999999999999999999765544
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-08 Score=130.55 Aligned_cols=345 Identities=14% Similarity=0.093 Sum_probs=229.9
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-h-hH--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhh-h
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSA-Q-GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ-C 1496 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-~-~v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~-~ 1496 (2058)
+|.+...+..+++.++..|..++..++..-+. . .+ ...+|.+++.|.+++...+..|+.+|..++...++.-.. .
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~ 83 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETR 83 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 56677777788899999999999998743332 1 22 457999999999999999999999999999864432111 1
Q ss_pred hhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcCch--hHHhHHHHHHhccCC--------CChhHHHHHHHHHhccc
Q 000143 1497 LPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGLTD--------PNDHTKYSLDILLQTTF 1565 (2058)
Q Consensus 1497 L~~Iip~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~--~i~~lvp~Ll~~l~d--------~~~~vr~al~~L~~~~f 1565 (2058)
-...+|.|+++|. +.++.++..|+++|..++..-... .+...+|.|+..+.. +....|
T Consensus 84 ~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~----------- 152 (457)
T 1xm9_A 84 RQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSR----------- 152 (457)
T ss_dssp HTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC-------------------
T ss_pred HcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhc-----------
Confidence 1367899999998 778999999999999999752111 123556666665521 110000
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH---hhhhHHHHHhhCC------CCHHHH
Q 000143 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI---GLLLPEVKKVLVD------PIPEVR 1636 (2058)
Q Consensus 1566 ~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl---~~ll~~L~~~l~d------~~~~vR 1636 (2058)
...+..+.+.|+.++.+++.. +. ....+ +..+|.|..++.+ ++..+.
T Consensus 153 --------------------e~~~~~v~~~a~~aL~nLs~~---~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~ 208 (457)
T 1xm9_A 153 --------------------EVVDPEVFFNATGCLRNLSSA---DA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSV 208 (457)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHTTS---HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTH
T ss_pred --------------------ccccHHHHHHHHHHHHHHccC---HH-HHHHHHHcCCCHHHHHHHHHhhccccCCchHHH
Confidence 002356677788888888752 21 12221 1456666666542 333445
Q ss_pred HHHHHHHHHHHHhh----------------------------------------------------ccc--CccchHHHH
Q 000143 1637 SVAARAIGSLIRGM----------------------------------------------------GEE--NFPDLVSWL 1662 (2058)
Q Consensus 1637 ~~a~~aLg~l~~~l----------------------------------------------------g~~--~~~~llp~L 1662 (2058)
+.+..++..++... |-+ ...+.++.|
T Consensus 209 e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L 288 (457)
T 1xm9_A 209 ENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTY 288 (457)
T ss_dssp HHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHH
T ss_pred HHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHH
Confidence 55555454442100 001 123467778
Q ss_pred HhhcccCCChHHHhhHHHHHHHHHHHhchh-------HH--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHH
Q 000143 1663 LDALKSDNSNVERSGAAQGLSEVLAALGTV-------YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733 (2058)
Q Consensus 1663 ~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~-------~l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~p 1733 (2058)
+..|.+..+..++..++++|+.++.+-+.. .+ ...+|.+.+.+.+++..+|..+++++.+++..-... ..
T Consensus 289 ~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~-~~ 367 (457)
T 1xm9_A 289 LNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH-RV 367 (457)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH-HH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH-HH
Confidence 888876666778889999999987643321 12 357899999999999999999999999997743221 12
Q ss_pred hHHHHHHHHHHhccCCC------HHHHHHHHHHHHHHHHHhccc--ch--hchHHhHhhhcCCC-CHHHHHHHHHHHHHH
Q 000143 1734 YLQQVLPAILDGLADEN------ESVRDAALGAGHVLVEHYATT--SL--PLLLPAVEDGIFND-NWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~------~~VR~~a~~al~~lv~~~~~~--~l--~~llp~L~~~l~d~-~~~vR~sav~ll~~L 1802 (2058)
.-...+|++++.|...+ +++...++.++..++..-... .+ ...+|.|.+.+.+. +.+++..|..++..+
T Consensus 368 i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 368 MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447 (457)
T ss_dssp HHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 23568999999998753 357778888888776432211 11 12678888888888 899999999888765
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.6e-09 Score=119.29 Aligned_cols=87 Identities=23% Similarity=0.323 Sum_probs=57.4
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHh
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIAS 1537 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~ 1537 (2058)
..++.+++.+.++++.+|..++..|+.+.. +..+|.|.+.+.|+++.||..|+++|+.++. ..
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-------~~ 81 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------ER 81 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------GG
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------HH
Confidence 456777777788888888888888876542 3566777777888888888888888877753 13
Q ss_pred HHHHHHhccCCCChhHH-HHHHHHH
Q 000143 1538 LVPTLLMGLTDPNDHTK-YSLDILL 1561 (2058)
Q Consensus 1538 lvp~Ll~~l~d~~~~vr-~al~~L~ 1561 (2058)
.++.+...+.|++..+| .++.+++
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALG 106 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555555555555554 3344443
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.4e-09 Score=139.51 Aligned_cols=302 Identities=15% Similarity=0.271 Sum_probs=217.7
Q ss_pred HHhhHHHHHHHHHHHhchhH--HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch--hHHHhHHHHHHHHHHhccCC
Q 000143 1674 ERSGAAQGLSEVLAALGTVY--FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--QFQNYLQQVLPAILDGLADE 1749 (2058)
Q Consensus 1674 ~R~~aa~~L~~i~~~~g~~~--l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~--~f~pyl~~ilp~Ll~~L~d~ 1749 (2058)
.+..++..++.+..+-+... -..++..+...+.+.+.. ++++.++..++..+|. .+.||+-.++|.++..+.|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 45666777777665332211 025666666666665444 9999999999977754 77899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCC-CHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHH
Q 000143 1750 NESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFND-NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEA 1828 (2058)
Q Consensus 1750 ~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~-~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~ 1828 (2058)
...||.+|..|...++..+.+.++..++|.|...+.+. .|..+..++.+++.+...
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~----------------------- 164 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDA----------------------- 164 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------------
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH-----------------------
Confidence 99999999999999999999999989999999999655 699999999999998522
Q ss_pred HHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh-hhHHHhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 000143 1829 HGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP-KTLKEIMPVLMNTLISSLASSSSERRQVAGR 1907 (2058)
Q Consensus 1829 ~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~-~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~ 1907 (2058)
+...+.. ...++++.+..+..|....|..+|..++..++.-.. .++.+++|.|+ +++.+|+. .-+
T Consensus 165 ~~~~~~~-----~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~----~~~~~p~~-----~~~ 230 (986)
T 2iw3_A 165 AKDQVAL-----RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLI----QCIADPTE-----VPE 230 (986)
T ss_dssp SHHHHHH-----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHH----HHHHCTTH-----HHH
T ss_pred hHHHHHH-----hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHH----HHhcChhh-----hHH
Confidence 1111222 233667777888999999999999999998886443 56667766654 55677754 223
Q ss_pred HHHHHHHH-----hCcchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhh-ChhhhHhHHhhHHHHHHHHhc-CCCHH
Q 000143 1908 ALGELVRK-----LGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASA-GKSQLLSFMDELIPTIRTALC-DSILE 1980 (2058)
Q Consensus 1908 ~Lg~L~~~-----lg~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~-~~~~l~~~~~~ll~~L~~~L~-D~d~~ 1980 (2058)
|+..|... +....+.-+.|.|.++|+++...++..++.-+..|.+-. .+....+|++.++|.+.+... -++|+
T Consensus 231 ~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe 310 (986)
T 2iw3_A 231 TVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPE 310 (986)
T ss_dssp HHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHH
T ss_pred HHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHH
Confidence 33333221 112235678899999999887665554554466555443 345678999999999998664 57999
Q ss_pred HHHHHHHHHHHHHHHhCh-h-----------hHHHHHHHHHHhcCC
Q 000143 1981 VRESAGLAFSTLFKSAGM-Q-----------AIDEIVPTLLHALED 2014 (2058)
Q Consensus 1981 VR~~Aa~a~~~l~~~~g~-~-----------~~~~ilp~Ll~~L~~ 2014 (2058)
+|+.|..|++.+.+..+. . ....++..+-..|..
T Consensus 311 ~r~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (986)
T 2iw3_A 311 AREVTLRALKTLRRVGNVGEDDAIPELSHAGDVSTTLQVVNELLKD 356 (986)
T ss_dssp HHHHHHHHHHHHHHHHTCBTTTBCCCCCCTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccchHHHHHHHHHHHhcc
Confidence 999999999999876543 1 133455556666654
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.4e-07 Score=116.25 Aligned_cols=479 Identities=11% Similarity=0.095 Sum_probs=287.5
Q ss_pred CCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHhhhC---ccccchhchHHH
Q 000143 1310 NTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLM----KSDKYGERRGAAFGLAGVVKGFG---ISSLKKYGIAAT 1382 (2058)
Q Consensus 1310 ~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~----~~~~~~vR~~Aa~~L~~l~~~~g---~~~l~~~~il~~ 1382 (2058)
+...++|+..+.-.+..+....++.+.+.+...++.+. .+........+..++..+.--.. ...+......+.
T Consensus 180 ~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~ 259 (778)
T 3opb_A 180 RISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL 259 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred ccChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence 34456777766666666666555566666666666444 11112223334444443322111 001111245666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh--hhHHhH
Q 000143 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA--QGVKLV 1459 (2058)
Q Consensus 1383 L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~--~~v~~l 1459 (2058)
+.+.+...++.....+++..+...|.. +....|+ ...++.|...+++ +.+|..|.-+|..+...... ..+..+
T Consensus 260 l~~~~~~~~~~~~~~a~L~lLsaACi~--~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~L 335 (778)
T 3opb_A 260 FKKRVFEEQDLQFTKELLRLLSSACID--ETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQL 335 (778)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHhCC--cHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHH
Confidence 666665554566666666655554431 2223333 3566777777765 57888887777777543322 235678
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhCh--hhHhhhhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCc----
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAP--QQLSQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKN---- 1532 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p--~~l~~~L~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~---- 1532 (2058)
.+.+.+.+.+.+-..|..|++.|+.+..... +.+... +..++.|++.+.+ .+..+...+...+..+.....+
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d-~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e 414 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSN-ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXX 414 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHC-HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhC-HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchh
Confidence 8888888888766668889999998875432 223332 5667888888875 5667888888888888775442
Q ss_pred -hhHHhHHHHHHhccC--CCChh-H--HHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1533 -PEIASLVPTLLMGLT--DPNDH-T--KYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2058)
Q Consensus 1533 -~~i~~lvp~Ll~~l~--d~~~~-v--r~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~ 1606 (2058)
+.+.++-+..-...- .+++. . .+.+..... ..+. -..++|.|...++..++.+|..++.++.+|+.
T Consensus 415 ~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~-~~l~------eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~- 486 (778)
T 3opb_A 415 XXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNE-KYIL------RTELISFLKREMHNLSPNCKQQVVRIIYNITR- 486 (778)
T ss_dssp CC------------------CCTHHHHHHHHHHHHH-HHTT------TTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-
T ss_pred hhhhhhhhhhccccCcccCcccccccchHHHHHHHH-HHHH------HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-
Confidence 122222221111100 01100 0 011111000 0111 12378888899988999999999999999985
Q ss_pred hCCCCchhhhH-hhhhHHHHHhhCCCCHH---HHHHHHHHHHHHHHhhccc-----C-ccchHHHHHhhcccCCCh----
Q 000143 1607 VTEPKDMIPYI-GLLLPEVKKVLVDPIPE---VRSVAARAIGSLIRGMGEE-----N-FPDLVSWLLDALKSDNSN---- 1672 (2058)
Q Consensus 1607 l~~~~~l~pyl-~~ll~~L~~~l~d~~~~---vR~~a~~aLg~l~~~lg~~-----~-~~~llp~L~~~L~~d~~~---- 1672 (2058)
+++.-.... +..++.|+.++.+.... +|..|+.||..+.....+. + ....+|.|++.|..++..
T Consensus 487 --d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~ 564 (778)
T 3opb_A 487 --SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNP 564 (778)
T ss_dssp --SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC
T ss_pred --CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccc
Confidence 222222222 35688888888776544 8999999999998543322 1 127889999998732211
Q ss_pred ---------HHHhhHHHHHHHHHHHhc---hh----HHH--HhhHHHHHhhccCChhHHHHHHHHHHHhHHHhc---hhH
Q 000143 1673 ---------VERSGAAQGLSEVLAALG---TV----YFE--HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG---VQF 1731 (2058)
Q Consensus 1673 ---------~~R~~aa~~L~~i~~~~g---~~----~l~--~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g---~~f 1731 (2058)
-.+..++.+|..++..-+ .+ .+. ..+|.+.+.+.+.+..+|.+++.++.+++..-. ..|
T Consensus 565 l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~ 644 (778)
T 3opb_A 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKF 644 (778)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGT
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 125678889888887542 11 233 488999999999999999999999999986443 233
Q ss_pred HHh----HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc---cchh--chHHhHhhhcCC--CCHHHHHHHHHHHH
Q 000143 1732 QNY----LQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSLP--LLLPAVEDGIFN--DNWRIRQSSVELLG 1800 (2058)
Q Consensus 1732 ~py----l~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~---~~l~--~llp~L~~~l~d--~~~~vR~sav~ll~ 1800 (2058)
... -.+-+++++..+..++..+|.+|..++..+...... ..+. ..++.+...+.+ ++..+|..++-++.
T Consensus 645 ~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 645 FNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFF 724 (778)
T ss_dssp SCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 211 112388999999999999999999999887533221 1111 244455555655 78899999888888
Q ss_pred HHH
Q 000143 1801 DLL 1803 (2058)
Q Consensus 1801 ~Ll 1803 (2058)
.+.
T Consensus 725 NL~ 727 (778)
T 3opb_A 725 GLF 727 (778)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=115.48 Aligned_cols=152 Identities=23% Similarity=0.259 Sum_probs=89.7
Q ss_pred HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHH
Q 000143 1457 KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA 1536 (2058)
Q Consensus 1457 ~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2058)
....+.+++.+.++++.+|..|+..|+.+.. +..++.+.+.+.|+++.||..|+.+|+.++. .
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-------~ 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD-------E 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------G
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------H
Confidence 4566778888888888888888888887642 2556777778888888888888888887753 1
Q ss_pred hHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000143 1537 SLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2058)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p 1615 (2058)
..++.+...+.|++..+| .++.+++.... ...++.+...+.|.++.+|..|+.+++.+..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------- 136 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD---------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---------- 136 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------
Confidence 345555556666655554 34444443110 1133444444555555555555555544321
Q ss_pred hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHH
Q 000143 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1616 yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l 1646 (2058)
+..++.|...+.|+++.||..++.+|+.+
T Consensus 137 --~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 137 --ERAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp --GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 12344444555555555555555555544
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.00 E-value=7.8e-06 Score=106.77 Aligned_cols=555 Identities=12% Similarity=0.093 Sum_probs=290.2
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~ 1457 (2058)
.++.-|...+...++. ....-+.++-.+....+-.|.. +.-++..+ +..-..+.||..+.-...++....+.+.-+
T Consensus 132 ~ll~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~-~~~l~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~ 207 (778)
T 3opb_A 132 ALLNELQIRIHYGEDT-HVTYLLSIILQLLNKFKYNFKE-VRFLVKEL--ILRISEDEVKSMMLIIFAELQSSFQKDFDK 207 (778)
T ss_dssp HHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCCCSTT-TTHHHHHH--HTTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHcCccccc-hhhHHHHh--ccccChhhhHHHHHHHHHHHHHhCchHHHH
Confidence 4555555555533344 3344455555666665544443 22222222 235567889888877777776666543323
Q ss_pred hHHHHHHHhc----cCCChHHHHHHHHHHHHHHhhChhhHhhh-h-hhHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhh-
Q 000143 1458 LVLPSLLKGL----EDKAWRTKQSSVQLLGAMAYCAPQQLSQC-L-PKIVPKLTEVL-TDTHPKVQSAGQTALQQVGSV- 1529 (2058)
Q Consensus 1458 ~llp~Ll~~L----~~~~~~~R~~a~~~Lg~la~~~p~~l~~~-L-~~Iip~L~~~L-~D~~~~VR~aA~~aL~~l~~~- 1529 (2058)
.+...+-..+ .+..-..-..++.++..+..-.|+..+.- + ....+.+.+.+ .+....+..++.+.+...|..
T Consensus 208 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~ 287 (778)
T 3opb_A 208 AVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDE 287 (778)
T ss_dssp HHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCc
Confidence 3222222222 11112222334555555544444432221 1 23455555555 345567777777777766642
Q ss_pred -cCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1530 -IKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1530 -~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
+++-..+..++.|...+.+ +.+| .|+-.|..+.........+...+.+.+.+.+.+.+.+.++.|++.+..+.-
T Consensus 288 ~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl-- 363 (778)
T 3opb_A 288 TMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSL-- 363 (778)
T ss_dssp HHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC--
Confidence 1111235667777777765 3444 344444443222222234556688888888887666668888777776643
Q ss_pred CCCCchhhh---HhhhhHHHHHhhCC-CCHHHHHHHHHHHHHHHHhhcccCc-cchHHHHHhhcccC-CChH---HHhhH
Q 000143 1608 TEPKDMIPY---IGLLLPEVKKVLVD-PIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSD-NSNV---ERSGA 1678 (2058)
Q Consensus 1608 ~~~~~l~py---l~~ll~~L~~~l~d-~~~~vR~~a~~aLg~l~~~lg~~~~-~~llp~L~~~L~~d-~~~~---~R~~a 1678 (2058)
++ ++... -+.+++.|..++.+ .+..+...+...|+.+......... .+=+..|....+.. +... .....
T Consensus 364 -~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~ 441 (778)
T 3opb_A 364 -KA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAA 441 (778)
T ss_dssp -SS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHH
T ss_pred -CH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccc
Confidence 22 22222 23567778888874 5666777777777777654322100 01111122221110 0000 00000
Q ss_pred HHHHHH-HHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHH---HH
Q 000143 1679 AQGLSE-VLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENES---VR 1754 (2058)
Q Consensus 1679 a~~L~~-i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~---VR 1754 (2058)
...+.+ ....+-. ..++|.+...+.+.++.+|+.+++++..++..-...-.-.-...+|+++..+.+..+. +|
T Consensus 442 ~~~v~~~~~~~l~e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k 518 (778)
T 3opb_A 442 KEDILLFNEKYILR---TELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIR 518 (778)
T ss_dssp HHHHHHHHHHHTTT---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHH
T ss_pred hHHHHHHHHHHHHH---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHH
Confidence 111111 1111111 3588889999999999999999999999976532211111235788899988776543 78
Q ss_pred HHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHH
Q 000143 1755 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII 1834 (2058)
Q Consensus 1755 ~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~ 1834 (2058)
..|+.|+..+.....+.. +++ + ... ..++.-+-.|+..-.+..+..+ .+++.
T Consensus 519 ~~AA~ALArLlis~np~~---~f~----~-~~~-----~~aI~pLv~LL~~~~~~~~~~l----~~~~~----------- 570 (778)
T 3opb_A 519 ILGCRALTRMLIFTNPGL---IFK----K-YSA-----LNAIPFLFELLPRSTPVDDNPL----HNDEQ----------- 570 (778)
T ss_dssp HHHHHHHHHHHHTSCHHH---HSS----S-SCS-----TTHHHHHHHTSCCSSSCSSCC-------CCC-----------
T ss_pred HHHHHHHHHHHhcCCHHH---HcC----C-Ccc-----ccchHHHHHHcCCCCCcccccc----ccccc-----------
Confidence 899999988764322110 000 0 000 0112222222100000000000 00000
Q ss_pred HHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh---hhH-HHhHH--HHHHHHHHHhcCCCHHHHHHHHHH
Q 000143 1835 EVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP---KTL-KEIMP--VLMNTLISSLASSSSERRQVAGRA 1908 (2058)
Q Consensus 1835 ~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~---~~l-~~~l~--~L~~~l~~~L~~~~~~~R~~A~~~ 1908 (2058)
....-+..|+.++..++.... +.. ..++. ..++.+...+.+++..+|..|.++
T Consensus 571 ---------------------~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~el 629 (778)
T 3opb_A 571 ---------------------IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLEL 629 (778)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred ---------------------ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHH
Confidence 001112334444555554321 122 22332 356677777888999999999999
Q ss_pred HHHHHHHhCc---chh----hc---hHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH--hhHHHHHHHHhcC
Q 000143 1909 LGELVRKLGE---RVL----PS---IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCD 1976 (2058)
Q Consensus 1909 Lg~L~~~lg~---~~l----~~---llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~--~~ll~~L~~~L~D 1976 (2058)
++.++..-.. .++ +. -++.|...++.++.++|..++.+|+.+.... +......+ ...++.+...+.+
T Consensus 630 I~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~-~~ia~~ll~~~~gi~~Ll~lL~~ 708 (778)
T 3opb_A 630 ISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTI-PLIAKELLTKKELIENAIQVFAD 708 (778)
T ss_dssp HHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-hHHHHHHHHccccHHHHHHHHhc
Confidence 9999963321 222 11 2778888898889999999999998654332 21112222 3467778888888
Q ss_pred --CCHHHHHHHHHHHHHHHHH
Q 000143 1977 --SILEVRESAGLAFSTLFKS 1995 (2058)
Q Consensus 1977 --~d~~VR~~Aa~a~~~l~~~ 1995 (2058)
+++++|..++.++..+..+
T Consensus 709 ~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 709 QIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp TTTCHHHHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999874
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.8e-09 Score=120.76 Aligned_cols=223 Identities=17% Similarity=0.170 Sum_probs=164.4
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-
Q 000143 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL- 1497 (2058)
Q Consensus 1423 p~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L- 1497 (2058)
+.+...+.++++.+|..|..++..++...... .+ ...+|.+++.+.+.+..+|..|+.+|+.++...++.-....
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44556677888999999999997766542221 11 45789999999999999999999999999986554322221
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch--hH--HhHHHHHHhccCCCChhHH-HHHHHHHhccccccCC--
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP--EI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVD-- 1570 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~--~i--~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~-- 1570 (2058)
...+|.+..+++++++.||..|+++|+.++..-... .+ ...+|.+++.+.+++..++ .++.++..........
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 174 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 258999999999999999999999999998753322 11 4588999999999888776 5666666532211000
Q ss_pred hhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000143 1571 APSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2058)
Q Consensus 1571 ~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~ 1647 (2058)
.-.-...+|.+...+.+.++.++..|+.++++++. .++....... ...++.+..++.++++++|..|..+|+.++
T Consensus 175 ~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIAS--GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT--SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 00113468889999999999999999999999985 2322222222 257888999999999999999999998765
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.1e-08 Score=116.14 Aligned_cols=237 Identities=19% Similarity=0.152 Sum_probs=168.2
Q ss_pred HHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000143 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2058)
Q Consensus 1460 lp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~l 1538 (2058)
+|.+++.+.++++.+|..|+.+|+.++...++...... ..++|.+.+.+.++++.||..|+++|+.++..- +...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~-- 79 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP--DEAI-- 79 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHH--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--hHHH--
Confidence 56777777777777788888888888766553222211 368899999999999999999999999997531 1111
Q ss_pred HHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh-hH
Q 000143 1539 VPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YI 1617 (2058)
Q Consensus 1539 vp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p-yl 1617 (2058)
.. +. -...+|.+...+++.++.++..++.++++++.. .+..... .-
T Consensus 80 ----------------~~---~~------------~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~ 126 (252)
T 4hxt_A 80 ----------------KA---IV------------DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PDEAIKAIVD 126 (252)
T ss_dssp ----------------HH---HH------------HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS--CHHHHHHHHH
T ss_pred ----------------HH---HH------------HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 00 00 012456677777777888999999999998852 2111111 12
Q ss_pred hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh-
Q 000143 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV- 1692 (2058)
Q Consensus 1618 ~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~- 1692 (2058)
...++.+..++.++++.+|..++.+++.++...... .-...+|.|++.+.+ .+..+|..++.+|+.++......
T Consensus 127 ~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~ 205 (252)
T 4hxt_A 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPTSAI 205 (252)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 357899999999999999999999999998632221 124688999999884 55678999999999887522111
Q ss_pred -HH--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHh
Q 000143 1693 -YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNY 1734 (2058)
Q Consensus 1693 -~l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~py 1734 (2058)
.+ ...++.+...+.++++.+|..++.+++.++...+..+.+|
T Consensus 206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 250 (252)
T 4hxt_A 206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLEHHHH 250 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC---
T ss_pred HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcccccc
Confidence 11 4578899999999999999999999999998766544333
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-07 Score=122.08 Aligned_cols=342 Identities=13% Similarity=0.077 Sum_probs=219.2
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhH-hhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh--cCch-
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV--IKNP- 1533 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l-~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~--~~~~- 1533 (2058)
.-+|.+++.|.+.+...+..|+.+|..++...++.- .-.-...+|.|+.+|...++.|+..|+++|..++.. -.+.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 345666666666666666666666666665433221 111136789999999999999999999999999863 1121
Q ss_pred hH--HhHHHHHHhccCC-CChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhh------------------cCCCHH
Q 000143 1534 EI--ASLVPTLLMGLTD-PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGL------------------RERSAE 1591 (2058)
Q Consensus 1534 ~i--~~lvp~Ll~~l~d-~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L------------------~d~s~~ 1591 (2058)
.+ ...+|.|+..+.. ++..++ .+..+|................-+|.|.+.+ ...+.+
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 22 3567888888875 444554 3333433321211111111122345555543 112578
Q ss_pred HHHHHHHHHHHHHhhhCCCCchhhh---HhhhhHHHHHhhC------CCCHHHHHHHHHHHHHHHHhhccc---------
Q 000143 1592 TKKKAAQIVGNMCSLVTEPKDMIPY---IGLLLPEVKKVLV------DPIPEVRSVAARAIGSLIRGMGEE--------- 1653 (2058)
Q Consensus 1592 vr~~A~~~l~~L~~~l~~~~~l~py---l~~ll~~L~~~l~------d~~~~vR~~a~~aLg~l~~~lg~~--------- 1653 (2058)
++..|+.++.+++.. + .+.... ...+++.|+..+. +++....+.|+.+|..++.....+
T Consensus 208 V~~nAa~~L~NLs~~--~-~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~ 284 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSE--R-SEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQE 284 (584)
T ss_dssp HHHHHHHHHHHHTSS--C-HHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC---
T ss_pred HHHHHHHHHHHHhcC--C-HHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 999999999999862 2 111111 1245555655544 345667788888887777543110
Q ss_pred --------------------CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh------HH--HHhhHHHHHhh
Q 000143 1654 --------------------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV------YF--EHILPDIIRNC 1705 (2058)
Q Consensus 1654 --------------------~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~------~l--~~llp~Ll~~l 1705 (2058)
+-+..++.|+..|+......++..++.+|..++.+-+.. .+ ...+|.|...+
T Consensus 285 ~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL 364 (584)
T 3l6x_A 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL 364 (584)
T ss_dssp -----------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGG
T ss_pred hcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHH
Confidence 112456777888875556778899999999887532211 12 46789999999
Q ss_pred ccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCC--------CHHHHHHHHHHHHHHHHHhccc---chh
Q 000143 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--------NESVRDAALGAGHVLVEHYATT---SLP 1774 (2058)
Q Consensus 1706 ~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~--------~~~VR~~a~~al~~lv~~~~~~---~l~ 1774 (2058)
.+++..++..++.++.+++...... ...-...+|.++..|.+. .+++...++.++..++..-... .++
T Consensus 365 ~s~~~~v~~~A~~aL~nLs~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~ 443 (584)
T 3l6x_A 365 TNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE 443 (584)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999998865432 233467899999999875 4678888888888776321111 111
Q ss_pred -chHHhHhhhcCCC--CHHHHHHHHHHHHHHH
Q 000143 1775 -LLLPAVEDGIFND--NWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1775 -~llp~L~~~l~d~--~~~vR~sav~ll~~Ll 1803 (2058)
..+|.|...+.+. ..+++..|..++..+.
T Consensus 444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 2678888888765 7888999988888875
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-07 Score=119.33 Aligned_cols=339 Identities=13% Similarity=0.106 Sum_probs=222.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--h
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G 1455 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l--~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~ 1455 (2058)
+|.+...+.+. ++..+..|..++..++..-. .....+ ...+|.+...+.++++.++..|..++..++...+.. .
T Consensus 4 l~~lv~~L~s~-~~~~q~~A~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ-DEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS-CTHHHHHHHHHHHHHTSSCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 56667777776 78889999999988874221 122122 247899999999999999999999999998642222 1
Q ss_pred H--HhHHHHHHHhcc-CCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh--------cCC--------CHHHH
Q 000143 1456 V--KLVLPSLLKGLE-DKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL--------TDT--------HPKVQ 1516 (2058)
Q Consensus 1456 v--~~llp~Ll~~L~-~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L--------~D~--------~~~VR 1516 (2058)
+ ...+|.+++.|. +.+...+..++.+|+.++.+..... ......+|.|+.++ .++ ++.|.
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~-~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHH-HHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 2 356899999998 7889999999999999998722111 12237888888888 322 45677
Q ss_pred HHHHHHHHHHHhhcCc--hhH---HhHHHHHHhccCC------CCh-hHHHHHHHHHhccccc-----------------
Q 000143 1517 SAGQTALQQVGSVIKN--PEI---ASLVPTLLMGLTD------PND-HTKYSLDILLQTTFVN----------------- 1567 (2058)
Q Consensus 1517 ~aA~~aL~~l~~~~~~--~~i---~~lvp~Ll~~l~d------~~~-~vr~al~~L~~~~f~~----------------- 1567 (2058)
..|+++|..++.. .+ ..+ ...+|.|+..+.+ ++. .+..|+..+....|..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 7999999999875 21 112 1567777766643 222 2223333322211100
Q ss_pred -------------c-------------------CCh-h--hHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhhCCCC
Q 000143 1568 -------------T-------------------VDA-P--SLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPK 1611 (2058)
Q Consensus 1568 -------------~-------------------~~~-~--~l~~llp~L~~~L~d-~s~~vr~~A~~~l~~L~~~l~~~~ 1611 (2058)
. ... . .....++.+...+.+ .++.++..|+.++.+++.. +..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~--~~~ 317 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS--KGL 317 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC--SSS
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC--cCc
Confidence 0 000 0 012345666666653 5689999999999999862 211
Q ss_pred ---ch-hhhH--hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc--CccchHHHHHhhcccCCC-----hHHHhhH
Q 000143 1612 ---DM-IPYI--GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLDALKSDNS-----NVERSGA 1678 (2058)
Q Consensus 1612 ---~l-~pyl--~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~--~~~~llp~L~~~L~~d~~-----~~~R~~a 1678 (2058)
.+ ...+ ...+|.|..++.+++.+++..|+.+|..++..-.-. .-...+|.|++.|..... .++...+
T Consensus 318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 318 MSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred chHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 11 1112 357899999999999999999999999998632111 123588889999975422 2344566
Q ss_pred HHHHHHHHHHhchh--HH--HHhhHHHHHhhccC-ChhHHHHHHHHHHHhH
Q 000143 1679 AQGLSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLP 1724 (2058)
Q Consensus 1679 a~~L~~i~~~~g~~--~l--~~llp~Ll~~l~~~-~~~vR~~al~~l~~la 1724 (2058)
+.+++.++..-... .+ ...++.+.+.+.+. +..++..+...+..+.
T Consensus 398 l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 67777776432221 12 35778888888888 8899999888887654
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-07 Score=116.08 Aligned_cols=212 Identities=11% Similarity=0.072 Sum_probs=152.4
Q ss_pred CHHHHHHHHHHHHHHHhhhCCCCchhhh---HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---C--ccchHH
Q 000143 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPY---IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---N--FPDLVS 1660 (2058)
Q Consensus 1589 s~~vr~~A~~~l~~L~~~l~~~~~l~py---l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~--~~~llp 1660 (2058)
+..+++.|+.++.+++. ++. ..... ....+|.|..++.+++++++..|+.+|+.++..-.++ . -...+|
T Consensus 213 ~~~l~~~Aa~aL~nLa~--~~~-~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~ 289 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTF--GDV-ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK 289 (458)
T ss_dssp HHHHHHHHHHHHHHHHT--TCH-HHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHhC--CCc-ccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHH
Confidence 35788999999999986 231 12222 2457999999999999999999999999997531111 1 135788
Q ss_pred HHHhhcccCCChHHHhhHHHHHHHHHHHhch--hHH---HHhhHHHHHhhccCCh----hHHHHHHHHHHHhHHH--hch
Q 000143 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF---EHILPDIIRNCSHQRA----SVRDGYLTLFKYLPRS--LGV 1729 (2058)
Q Consensus 1661 ~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~--~~l---~~llp~Ll~~l~~~~~----~vR~~al~~l~~la~~--~g~ 1729 (2058)
.|++.|....+..++..++.+|..++..... ..+ ...+|.+...+.+.+. .+++.++.++.+++.. .++
T Consensus 290 ~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~ 369 (458)
T 3nmz_A 290 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 369 (458)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH
Confidence 9999765445566788888888887763321 112 4578888888887643 4888899999998863 222
Q ss_pred hHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc---cchh-chHHhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1730 QFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYAT---TSLP-LLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1730 ~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~---~~l~-~llp~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
+....+ ...+|.++..|.+.+..+++.|+.++..+...... ..++ -.+|.|.+.+.+.+.++|..+...+..++
T Consensus 370 ~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 370 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449 (458)
T ss_dssp HHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 222222 34789999999999999999999999988632111 1111 36899999999999999999999999986
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=98.87 E-value=6.7e-07 Score=115.40 Aligned_cols=344 Identities=13% Similarity=0.077 Sum_probs=224.9
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc---ch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh---Ccc
Q 000143 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD---EA--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF---GIS 1372 (2058)
Q Consensus 1301 iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~---~~--~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~---g~~ 1372 (2058)
-++.|+..|.++++.+|..++.++..+.....+ .+ ...++.|++.| .+++..++..|+.+|..++.+- ...
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL-~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHH-CCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 467788888999999999888888777643211 11 23567777655 4567899999999999998631 112
Q ss_pred ccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHc------------------CCCCH
Q 000143 1373 SLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF------------------SDQVV 1434 (2058)
Q Consensus 1373 ~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l------------------~D~~~ 1434 (2058)
.+.....+|.|.+.+.+..+...++.+..++..++.. ...-...+...+|.|...+ ..+++
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccccccH
Confidence 2234467889999988755778888888888888752 1111122334566666543 12357
Q ss_pred HHHHHHHHHHHHHHHhhhh--hhH---HhHHHHHHHhccC------CChHHHHHHHHHHHHHHhhChhhH----------
Q 000143 1435 AVREAAECAARAMMSQLSA--QGV---KLVLPSLLKGLED------KAWRTKQSSVQLLGAMAYCAPQQL---------- 1493 (2058)
Q Consensus 1435 ~VR~aA~~al~~l~~~l~~--~~v---~~llp~Ll~~L~~------~~~~~R~~a~~~Lg~la~~~p~~l---------- 1493 (2058)
.|+..|..+|..++..... ..+ ..+++.|+..+.+ .+.+....|+.+|.++++......
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 9999999999998754322 112 2345666666542 456777888999988887632111
Q ss_pred ---------------hh-hhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCc--h----hH--HhHHHHHHhccCC
Q 000143 1494 ---------------SQ-CLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKN--P----EI--ASLVPTLLMGLTD 1548 (2058)
Q Consensus 1494 ---------------~~-~L~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~--~----~i--~~lvp~Ll~~l~d 1548 (2058)
.. +-+.+++.++.++.+ .++.++++|+.+|..++..-.. . .+ ...+|.|.+.+..
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 00 123567888888853 5799999999999999753210 1 12 3568999999998
Q ss_pred CChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCC--------CHHHHHHHHHHHHHHHhhhCCCCchhhhH-h
Q 000143 1549 PNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER--------SAETKKKAAQIVGNMCSLVTEPKDMIPYI-G 1618 (2058)
Q Consensus 1549 ~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~--------s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~ 1618 (2058)
++..++ .++.+|.............-...+|.|.+.|... +.++...|+.++++++. +++....... .
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a--~~~~~~~~I~~~ 444 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA--ENLEAAKKLRET 444 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc--CCHHHHHHHHHC
Confidence 887775 4555555422222222222345778888888654 46788889999998875 2322222222 2
Q ss_pred hhhHHHHHhhCCC--CHHHHHHHHHHHHHHHH
Q 000143 1619 LLLPEVKKVLVDP--IPEVRSVAARAIGSLIR 1648 (2058)
Q Consensus 1619 ~ll~~L~~~l~d~--~~~vR~~a~~aLg~l~~ 1648 (2058)
..+|.|..++.+. .+.+++.|+.+|..+..
T Consensus 445 g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp THHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 5788888888775 77888888888888773
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.7e-08 Score=116.98 Aligned_cols=225 Identities=17% Similarity=0.175 Sum_probs=166.3
Q ss_pred HHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccch-----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc--ccc
Q 000143 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEA-----PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSL 1374 (2058)
Q Consensus 1302 v~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~-----~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~--~~l 1374 (2058)
++.+...|.++++.++..++.++..++....+.. ...++.+++.+.. +++.+|..|+.+|+.+..+... ..+
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAV 92 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4556667778888899888888866554321111 1345666665544 4589999999999998763211 111
Q ss_pred chhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh
Q 000143 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA 1453 (2058)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~ 1453 (2058)
.....++.|.+.+.++ ++.+|+.|+.+++.++..........+ ...+|.++..+.++++.+|..|..++..++...+.
T Consensus 93 ~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 93 IDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 1235789999999886 899999999999999764332112222 24889999999999999999999999999754332
Q ss_pred hh---H-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1454 QG---V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1454 ~~---v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
.. + ..++|.+++.+.+++..+|..++.+|+.++...+....... ..+++.+..++.+.++.||..|+++|..++.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 21 1 46789999999999999999999999999976665433222 3588999999999999999999999998764
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.7e-05 Score=109.92 Aligned_cols=140 Identities=11% Similarity=0.132 Sum_probs=90.5
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcC------------CCHHHHHHHHHHHHHHHHHhCcc--
Q 000143 1854 SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS------------SSSERRQVAGRALGELVRKLGER-- 1919 (2058)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~------------~~~~~R~~A~~~Lg~L~~~lg~~-- 1919 (2058)
+..++.+|..++.+|+.+...+.. -.++++.+++.++..+.+ .+.++|..|+.++..+++.+++.
T Consensus 542 ~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~ 620 (1204)
T 3a6p_A 542 DTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 620 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred CCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344678999999999888754332 136777777777776655 23579999999999999998765
Q ss_pred -hhhchHHHHhhhcCCC---ChhHHHHHHHHHHHHHHhhC-hhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000143 1920 -VLPSIIPILSRGLKDP---SASRRQGVCIGLSEVMASAG-KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFK 1994 (2058)
Q Consensus 1920 -~l~~llp~L~~~l~d~---~~~vR~~a~~aL~eii~~~~-~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~ 1994 (2058)
+++++...+...+... +...+.....+++-+....+ .+....|+..+++.+.....++ +.+. +......++.
T Consensus 621 p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~~--~~~~-~~s~~~~f~~ 697 (1204)
T 3a6p_A 621 PNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPVASIWLSQ--DMHR-VLSDVDAFIA 697 (1204)
T ss_dssp GGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSCH--HHHH-HHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHccH--HHHH-hhcCHHHHHH
Confidence 4556666666655432 34556666667775543333 3344556888888888877543 3443 3333344444
Q ss_pred HhC
Q 000143 1995 SAG 1997 (2058)
Q Consensus 1995 ~~g 1997 (2058)
.+|
T Consensus 698 ~~G 700 (1204)
T 3a6p_A 698 YVG 700 (1204)
T ss_dssp HHT
T ss_pred HhC
Confidence 444
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=5.3e-07 Score=113.88 Aligned_cols=313 Identities=12% Similarity=0.030 Sum_probs=199.2
Q ss_pred chHHHHHHHHhCCC-----------CHHHHHHHHHHHHHHHHHhcccchhhH----HH-------HHHHHHHHcCCC---
Q 000143 1378 GIAATLREGLADRN-----------SAKRREGALLAFECLCEKLGRLFEPYV----IQ-------MLPLLLVAFSDQ--- 1432 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~-----------~~~~R~~al~al~~L~~~lg~~~~p~l----~~-------llp~Ll~~l~D~--- 1432 (2058)
.++|.|.+.++..+ ++..|..|..++..|+.+-++....-. -. ..+.+++.+...
T Consensus 70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 149 (458)
T 3nmz_A 70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149 (458)
T ss_dssp TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence 56777777776532 378999999999999987654333211 11 113333333221
Q ss_pred -C---HHHHH-------HHHHHHHHHHHhhhhh--hH--HhHHHHHHHhcc----------C-CChHHHHHHHHHHHHHH
Q 000143 1433 -V---VAVRE-------AAECAARAMMSQLSAQ--GV--KLVLPSLLKGLE----------D-KAWRTKQSSVQLLGAMA 1486 (2058)
Q Consensus 1433 -~---~~VR~-------aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~----------~-~~~~~R~~a~~~Lg~la 1486 (2058)
+ ..||+ .|.++|..++.. +.. .+ ...++.|+..+. + .+...+..|+.+|..++
T Consensus 150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 1 11666 778888877433 211 11 245666666663 1 23567889999999999
Q ss_pred hhChhh--HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000143 1487 YCAPQQ--LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2058)
Q Consensus 1487 ~~~p~~--l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2058)
...+.. ........+|.|+.+|...++.|+..|+++|..++.. .++. .|.++..
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~-~~~~------------------~k~~I~~----- 284 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWR-ADVN------------------SKKTLRE----- 284 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS-CCHH------------------HHHHHHH-----
T ss_pred CCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC-CCHH------------------HHHHHHH-----
Confidence 876432 1112356799999999999999999999999998642 1111 1111110
Q ss_pred ccccCChhhHhhHHHHHHHh-hcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh--HhhhhHHHHHhhCCCCH----HHHH
Q 000143 1565 FVNTVDAPSLALLVPIVHRG-LRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIP----EVRS 1637 (2058)
Q Consensus 1565 f~~~~~~~~l~~llp~L~~~-L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py--l~~ll~~L~~~l~d~~~----~vR~ 1637 (2058)
...+|.|.+. +...+..++..|+.++.+|+.. .+ ..-... ....+|.|..++.++.. +++.
T Consensus 285 ----------~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~-~~-~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~ 352 (458)
T 3nmz_A 285 ----------VGSVKALMECALEVKKESTLKSVLSALWNLSAH-CT-ENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 352 (458)
T ss_dssp ----------TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH-CH-HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHH
T ss_pred ----------cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccC-CH-HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHH
Confidence 1134555554 3445677888888888888762 11 111112 23578889998886543 4889
Q ss_pred HHHHHHHHHHHh--hcccC-----ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch--hHH--HHhhHHHHHhhc
Q 000143 1638 VAARAIGSLIRG--MGEEN-----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF--EHILPDIIRNCS 1706 (2058)
Q Consensus 1638 ~a~~aLg~l~~~--lg~~~-----~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~--~~l--~~llp~Ll~~l~ 1706 (2058)
.|+.+|..++.. .+++. -...+|.|++.|++. +..++..++.+|+.++..-.. ..+ ...+|.+.+.+.
T Consensus 353 ~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~ 431 (458)
T 3nmz_A 353 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 431 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTT
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 999999988852 12221 135789999999854 455888999999988742111 122 457899999999
Q ss_pred cCChhHHHHHHHHHHHhHHHhc
Q 000143 1707 HQRASVRDGYLTLFKYLPRSLG 1728 (2058)
Q Consensus 1707 ~~~~~vR~~al~~l~~la~~~g 1728 (2058)
+.+..+|+.+..++.+++..-.
T Consensus 432 s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 432 SKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp CSSHHHHHHHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999999886543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.3e-07 Score=103.37 Aligned_cols=191 Identities=16% Similarity=0.142 Sum_probs=142.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhh
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~ 1495 (2058)
...|.+...+.++++.+|..|..++..++...+.. .+ ...+|.+++.+.+.++.+|..|+.+|+.++...+.....
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 34567778889999999999999999997443322 12 357899999999999999999999999999765543222
Q ss_pred hh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhH
Q 000143 1496 CL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1496 ~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l 1574 (2058)
.. ...+|.++..++++++.||..|+++|+.++... +... ..+. -
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~---------------------~~~~------------~ 136 (210)
T 4db6_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQI---------------------QAVI------------D 136 (210)
T ss_dssp HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHH---------------------HHHH------------H
T ss_pred HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHH---------------------HHHH------------H
Confidence 11 368899999999999999999999999997521 1110 0000 1
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh-hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHH
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP-YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLI 1647 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p-yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~ 1647 (2058)
...+|.+.+.+++.+..++..|+.++++++.. .+..... .-...++.|..++.++++++|..|..+|+.++
T Consensus 137 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 137 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 12567777777777889999999999999862 2221111 12357899999999999999999999999876
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.67 E-value=2.2e-07 Score=105.81 Aligned_cols=188 Identities=19% Similarity=0.164 Sum_probs=141.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc--cccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh
Q 000143 1340 SRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417 (2058)
Q Consensus 1340 ~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~--~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~ 1417 (2058)
...+..+..++++.+|..|+.+|..+..+... ..+.....++.|.+.+.+. ++.+|+.|+.+++.++..........
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 33444555667788898899988888753211 1122236788899999887 89999999999999874322111111
Q ss_pred H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--h-H-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhh
Q 000143 1418 V-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--G-V-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ 1492 (2058)
Q Consensus 1418 l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~-v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~ 1492 (2058)
+ ...+|.++..+.++++.+|..|..++..++...... . + ...+|.+++.+.+.+..+|..++.+|+.++...+..
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 172 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH
Confidence 1 247899999999999999999999999997543322 1 1 457899999999999999999999999999875544
Q ss_pred Hhh-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1493 LSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1493 l~~-~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
... .-...++.|.+++.+.++.||+.|+++|..+++
T Consensus 173 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 173 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 222 123688999999999999999999999999864
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.3e-05 Score=81.35 Aligned_cols=192 Identities=15% Similarity=0.153 Sum_probs=134.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Q 000143 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVA 1428 (2058)
Q Consensus 1349 ~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~ 1428 (2058)
++-|.+++.|...+..+++....-. .+++..|...+..+..-..-++...+||.++..-+ ..+..++|.++..
T Consensus 43 DDlwtV~kNAl~vi~~i~~~~~el~---epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P----e~v~~vVp~lfan 115 (253)
T 2db0_A 43 DDLWTVVKNAISIIMVIAKTREDLY---EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP----ELVKSMIPVLFAN 115 (253)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCGGGH---HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHhHHHH---HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----HHHHhhHHHHHHH
Confidence 3346666666665555555432110 12333333333322222233344456777665432 2456788999988
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh
Q 000143 1429 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2058)
Q Consensus 1429 l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L 1508 (2058)
+.-.++..|-....+++.++...+. ....+...+...+.+++-..|..++..++.+.+..++...++ +|.+..+|
T Consensus 116 yrigd~kikIn~~yaLeeIaranP~-l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~Pf----LprL~aLL 190 (253)
T 2db0_A 116 YRIGDEKTKINVSYALEEIAKANPM-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPF----LPRIINLL 190 (253)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGGG----HHHHHGGG
T ss_pred HhcCCccceecHHHHHHHHHHhChH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCcc----hHHHHHHH
Confidence 8877899999999999999876543 345566677788889998889999999999988877766655 55677899
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH
Q 000143 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554 (2058)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr 1554 (2058)
.|.+..||..|.++|..++.. +|.+..++...++-++|+++-+.
T Consensus 191 ~D~deiVRaSaVEtL~~lA~~--npklRkii~~kl~e~~D~S~lv~ 234 (253)
T 2db0_A 191 HDGDEIVRASAVEALVHLATL--NDKLRKVVIKRLEELNDTSSLVN 234 (253)
T ss_dssp GCSSHHHHHHHHHHHHHHHTS--CHHHHHHHHHHHHHCCCSCHHHH
T ss_pred cCcchhhhHHHHHHHHHHHHc--CHHHHHHHHHHHHHhcCcHHHHH
Confidence 999999999999999999975 66788888888888999987653
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-06 Score=99.40 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=131.6
Q ss_pred CCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHH----hCCCCHHHHHHHHHHHHHHHHHhcc---cchhh-HHHH
Q 000143 1350 DKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL----ADRNSAKRREGALLAFECLCEKLGR---LFEPY-VIQM 1421 (2058)
Q Consensus 1350 ~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l----~~~~~~~~R~~al~al~~L~~~lg~---~~~p~-l~~l 1421 (2058)
.++..|..|...|...+.......+ ..++.+...+ .+. |..+-..++..+..+...+++ .+.+| ...+
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~---~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~ 133 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLL---SNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETPMSQEEVSAF 133 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHH---HTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHH---HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3688888777777776654221111 2233334433 354 888888888888888776643 46666 4789
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHH
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Ii 1501 (2058)
+|.++..++|+.+.||+.+...+..+...+++ ..+++.+.+++.+++||+|.+++..++.+....+-.. ...+
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~----~~~l 206 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP----LKSL 206 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG----GGGG
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc----cccc
Confidence 99999999999999999999999888765554 3567788889999999999999999999986644332 2456
Q ss_pred ---HHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch
Q 000143 1502 ---PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP 1533 (2058)
Q Consensus 1502 ---p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~ 1533 (2058)
|.+.++++|++..||.+|..++..+....++.
T Consensus 207 ~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 207 SVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp CHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 88899999999999999999999988877764
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.6e-05 Score=80.99 Aligned_cols=216 Identities=19% Similarity=0.156 Sum_probs=169.1
Q ss_pred HHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhc
Q 000143 1299 HAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378 (2058)
Q Consensus 1299 ~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~ 1378 (2058)
+.++..++..|.|.-|.||..+...+..+....++-....+..++-.+..++.-..-...+.+++.++... ++.+. .
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-Pe~v~--~ 107 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-PELVK--S 107 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-HHHHH--H
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-HHHHH--h
Confidence 67788899999999999999999888888887777778888899988888876666667778888877643 33332 5
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHh
Q 000143 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~ 1458 (2058)
++|.+.....-. +++.|-+.-.+++.|+...++ ....+..-++..+.+++..=|-+|..-++.+..+- ...+..
T Consensus 108 vVp~lfanyrig-d~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-~~yv~P 181 (253)
T 2db0_A 108 MIPVLFANYRIG-DEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-FKYVNP 181 (253)
T ss_dssp HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-HHHHGG
T ss_pred hHHHHHHHHhcC-CccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-ccccCc
Confidence 677777766555 889999999999999886553 23455666677888988888888877666654332 233567
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
++|.++..|.|.+--+|..+++.|+.++...|+ +..++-..++-++|++..|....-.+|+.+.-
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npk-----lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDK-----LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH-----HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999987765 34556666777999999999999999988863
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.52 E-value=5.4e-05 Score=103.94 Aligned_cols=463 Identities=11% Similarity=0.078 Sum_probs=232.4
Q ss_pred HHHHHHhhcCchhHHhHHHHHHhccCCCCh-hH-H-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHH
Q 000143 1522 ALQQVGSVIKNPEIASLVPTLLMGLTDPND-HT-K-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQ 1598 (2058)
Q Consensus 1522 aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~-~v-r-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~ 1598 (2058)
++..|++.+....++.++..+.+--.+.+. .. + .-+..+.+.-+ .......+..+.|.+.....+.+..-.+.|++
T Consensus 452 i~~~f~~~~~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~-rn~~~~~l~~l~~~~e~L~~~~dk~~qr~aaE 530 (997)
T 1vsy_5 452 VLKTAGHLLTREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLIS-SGFCELNMSDLFELCESYYNKDDKASMIMSVE 530 (997)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHT-TTTCCCCGGGHHHHHHHTCCSSCHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHh-cccchhhHHHHHHHHHHHhccccHHHHHHHHH
Confidence 345566555555667777766532111111 11 1 12222221000 11123457789999999888888888899999
Q ss_pred HHHHHHhhhC--CCCchhhhHhhhhHHHHHhhC-CCCHHHHHHHHHHHHHHHHhhcccCccchHHHH--Hhh--cccCCC
Q 000143 1599 IVGNMCSLVT--EPKDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWL--LDA--LKSDNS 1671 (2058)
Q Consensus 1599 ~l~~L~~~l~--~~~~l~pyl~~ll~~L~~~l~-d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L--~~~--L~~d~~ 1671 (2058)
+++.+..... ..+.....-.-+.|.+...+. +-.++....=..++..+.....+..++.++..+ ++. ..+...
T Consensus 531 i~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~~l~~~~~s 610 (997)
T 1vsy_5 531 IVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDA 610 (997)
T ss_dssp HHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCCCCCCCSSC
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhcccCCCCCc
Confidence 9988765211 113344455568888888888 567776655555555565555554455555544 221 111112
Q ss_pred hHHHhhHHHHHHHHHHHhchh--HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhc-hhHHHhHHHHHHHHHHh---
Q 000143 1672 NVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG-VQFQNYLQQVLPAILDG--- 1745 (2058)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~--~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g-~~f~pyl~~ilp~Ll~~--- 1745 (2058)
.........-|..++...|-. ..++++..++ +.++...||+.+...+..+....- +.+ +....++......
T Consensus 611 sf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~-~~~~~~l~~~~~~~~~ 687 (997)
T 1vsy_5 611 ATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSI-SDPTTLLEAERNDPDG 687 (997)
T ss_dssp CCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCB-SCHHHHHHHHHSCSSS
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCC-CCHHHHHHhhcccccc
Confidence 212223344444444444432 1345555555 777889999999999988776541 001 1112222111110
Q ss_pred --c--cCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHH--HHHHHHHHHHHH---------HhhCCc
Q 000143 1746 --L--ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIR--QSSVELLGDLLF---------KVAGTS 1810 (2058)
Q Consensus 1746 --L--~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR--~sav~ll~~Ll~---------~~~g~~ 1810 (2058)
+ .+..+.+.+...+.+..+-...... +..-| .-......++ ...+..+...+. -+.+..
T Consensus 688 ~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~--~~~~~----~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~l 761 (997)
T 1vsy_5 688 LGLPLKSVPEKVDAYIKKQFEIIKNLEDSV--VGLNP----QQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYV 761 (997)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHHHTGGGGTT--SSCCS----TTTTTSHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTT
T ss_pred ccCccccCcchHHHHHHHHHHHHHHhhhcc--cccCc----cccchHHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHH
Confidence 0 0111222222222222111000000 00000 0000000000 011111111000 000001
Q ss_pred ccccccCCCCCCC-cchHHHHHHHHHHh-----ChhhHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHh-hChhhHHHh
Q 000143 1811 GKALLEGGSDDEG-ASTEAHGRAIIEVL-----GRDKRNEVLAALYMVRS-DVSLSVRQAALHVWKTIVA-NTPKTLKEI 1882 (2058)
Q Consensus 1811 ~k~~~~~~~e~~~-~~~e~~~~~l~~~L-----g~~~~~~vL~~L~~~~~-D~~~~VR~aA~~~l~~lv~-~~~~~l~~~ 1882 (2058)
.+.++.-.+.+|. .........+...+ .++..+.++..+..... +.++ .|.+++..+..++- |..--..+-
T Consensus 762 lP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~ 840 (997)
T 1vsy_5 762 LPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE 840 (997)
T ss_dssp TTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH
T ss_pred HHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH
Confidence 1111110111110 00000011122233 22333445555544333 6788 99999888766652 221100112
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCc-chhhchHHHHhhhcCC------------CChhHHHHHHHHHH
Q 000143 1883 MPVLMNTLISSLASSS-SERRQVAGRALGELVRKLGE-RVLPSIIPILSRGLKD------------PSASRRQGVCIGLS 1948 (2058)
Q Consensus 1883 l~~L~~~l~~~L~~~~-~~~R~~A~~~Lg~L~~~lg~-~~l~~llp~L~~~l~d------------~~~~vR~~a~~aL~ 1948 (2058)
-..+.+.++..|.|+. .+||..|+.+|+.+++..+. .....++..+.+.+.. .....|.+++.+|+
T Consensus 841 ~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~ 920 (997)
T 1vsy_5 841 KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLG 920 (997)
T ss_dssp HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHH
Confidence 2466777888899999 99999999999999975423 3334555555554422 01146788999999
Q ss_pred HHHHhhChhh-hHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000143 1949 EVMASAGKSQ-LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSA 1996 (2058)
Q Consensus 1949 eii~~~~~~~-l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~ 1996 (2058)
.++.+.+-+. .-+|++.++..|-....|+.+ |+..+-.+++.+.+.-
T Consensus 921 AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH 968 (997)
T 1vsy_5 921 AIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVR 968 (997)
T ss_dssp HHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHT
T ss_pred HHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhcc
Confidence 9998875432 146888888888878888776 9999999999987653
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-06 Score=101.98 Aligned_cols=187 Identities=18% Similarity=0.171 Sum_probs=137.1
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHhhChhh-----HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-----
Q 000143 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ-----LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----- 1532 (2058)
Q Consensus 1463 Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~-----l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----- 1532 (2058)
+.+.+.+.+|..|..|++.+..+....+.. ....+..+.+.+.+.+.|+|..|...++.++..++...+.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 568899999999999999998888664432 2223456667778889999999999999999999886542
Q ss_pred ----hhHHhHHHHHHhc-cCCCChhHH-HHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1533 ----PEIASLVPTLLMG-LTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2058)
Q Consensus 1533 ----~~i~~lvp~Ll~~-l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~ 1606 (2058)
.+...++|.++.. +.|+...++ .+++++....... .....+++.+..+++..++.++..++..+..+...
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~----~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD----TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS----SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc----CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 2346788888865 788888776 4555554311111 11234677788899999999999999888887765
Q ss_pred hCCC-CchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1607 VTEP-KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1607 l~~~-~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
.+.. ....+.++.+++.+..++.|+++.||..|..+++.+...+|+.
T Consensus 170 fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 170 FGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp HTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred hCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 4432 2345567778888999999999999999999999999999865
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00019 Score=98.64 Aligned_cols=656 Identities=12% Similarity=0.061 Sum_probs=307.9
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhC---CCCHHHHHHHHHHHH--HHHHHh
Q 000143 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD---RNSAKRREGALLAFE--CLCEKL 1410 (2058)
Q Consensus 1336 ~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~---~~~~~~R~~al~al~--~L~~~l 1410 (2058)
..++..+++ +..+.=..+|+.|..+|..+.+.+.... ..++|.+.+.++. ..+...-+||+..+. .++..+
T Consensus 132 ~~ll~dL~~-Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~---~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~ 207 (997)
T 1vsy_5 132 NLLLVDIIQ-LATSLYPDIYKPAQGTLVHCMKQLVGSY---GVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKL 207 (997)
T ss_dssp HHHHHHHHH-HHTSSCHHHHHHHHHHHHHHHTTBTTHH---HHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHG
T ss_pred HHHHHHHHH-HhcCchHHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHH
Confidence 455666665 4455557899999999998888663322 2566666666544 346677788887655 333333
Q ss_pred cccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-----------------------hh------------
Q 000143 1411 GRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-----------------------QG------------ 1455 (2058)
Q Consensus 1411 g~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-----------------------~~------------ 1455 (2058)
... -.++..+++.++.+...+.+.|+..+..+...++..+.. .+
T Consensus 208 ~~d-~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r 286 (997)
T 1vsy_5 208 MTD-YKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKR 286 (997)
T ss_dssp GGC-HHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHH
T ss_pred hcC-hHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHH
Confidence 221 235678889999888777888877776665555542111 00
Q ss_pred --H----HhHHHHHHHhc-cCCC--hHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000143 1456 --V----KLVLPSLLKGL-EDKA--WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQV 1526 (2058)
Q Consensus 1456 --v----~~llp~Ll~~L-~~~~--~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l 1526 (2058)
. ..+...+++.. .+.. |+....++..+-.+..... .+.-+.++..+.+.+.|.||.+|..|..++..+
T Consensus 287 ~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d---~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 287 EYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLE---SKPDKRAVFSIISQISTKHPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSS---CCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 1 11222223333 2356 9888777766444432111 122246777888999999999999999999777
Q ss_pred HhhcCchh-----HHhH-----HHHHHhccCCCC-hhHHHHHHHHHh---cc-ccccC------C---------------
Q 000143 1527 GSVIKNPE-----IASL-----VPTLLMGLTDPN-DHTKYSLDILLQ---TT-FVNTV------D--------------- 1570 (2058)
Q Consensus 1527 ~~~~~~~~-----i~~l-----vp~Ll~~l~d~~-~~vr~al~~L~~---~~-f~~~~------~--------------- 1570 (2058)
...+.... +..+ .|.-+....+++ .....-.+.+.. .. |+... .
T Consensus 364 l~~~k~~~~~~~d~~~~~~~~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~yfid~~~~~Gwl~Wp~~~~vy~p~~~~l 443 (997)
T 1vsy_5 364 CNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDLRAYVGWLCWGRLMYVMSPKALKL 443 (997)
T ss_dssp HHHHHHHHHHTTCGGGGSSSSCCCTTEEEEESCSTTTHHHHHHHHSCCSSCCCBCCSCCCSBTTBCCSEEEEECTTCCCC
T ss_pred HHHHHhhhcCCCcHHHhhccccCCCCceecCCCCccHHHHHHHHHhcccCCccceeCCCCCeEeeeCCceeEeCCCCCCC
Confidence 66432100 0000 000000000010 011111111110 01 22100 0
Q ss_pred --hhhHhhHHHHHHH-------------hhcCC--CHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCH
Q 000143 1571 --APSLALLVPIVHR-------------GLRER--SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP 1633 (2058)
Q Consensus 1571 --~~~l~~llp~L~~-------------~L~d~--s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~ 1633 (2058)
.+.-..++..+.+ ..+|. +..-+..-+..+..+..++... .-...++.+.+.+..+..|.+.
T Consensus 444 ~~~~~e~~i~~~f~~~~~~~~~~~l~~~l~qe~~~~~~F~~~~v~l~k~lf~l~~rn-~~~~~l~~l~~~~e~L~~~~dk 522 (997)
T 1vsy_5 444 NLRENELEVLKTAGHLLTREFLRDVTMNLVQDNETRGVFSSGNVSFFSLVILLISSG-FCELNMSDLFELCESYYNKDDK 522 (997)
T ss_dssp CCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTTT-TCCCCGGGHHHHHHHTCCSSCH
T ss_pred CCCHHHHHHHHHHHhhcCHHHHHHHHHHHHhhccccCccccchHHHHHHHHHHHhcc-cchhhHHHHHHHHHHHhccccH
Confidence 0000011111110 01111 0000111222333333322100 0012356677788888888888
Q ss_pred HHHHHHHHHHHHHHHhhccc---C----ccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHH--h
Q 000143 1634 EVRSVAARAIGSLIRGMGEE---N----FPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR--N 1704 (2058)
Q Consensus 1634 ~vR~~a~~aLg~l~~~lg~~---~----~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~--~ 1704 (2058)
.-+..+++.++.+..+...- . ..-+.|.+...+.++-..+....=..++.-+.....+..+..++..+.. .
T Consensus 523 ~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L~e~l~~~~~ 602 (997)
T 1vsy_5 523 ASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADG 602 (997)
T ss_dssp HHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHHHHHHHHhhc
Confidence 88888899888887643211 1 1235555555554222222222212233344444444445555554422 1
Q ss_pred h---ccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHh
Q 000143 1705 C---SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVE 1781 (2058)
Q Consensus 1705 l---~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~ 1781 (2058)
. .+.+.-....-+.++..+....|-.+.. ...++..++ +.++...||+.....+..+....-.... |..
T Consensus 603 ~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~-~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~~----~~~- 674 (997)
T 1vsy_5 603 MFDRESDAATHQTSKIYMLRSILMSMEFRAPD-VGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPSI----SDP- 674 (997)
T ss_dssp CCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCC-CHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCCB----SCH-
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHhcccccc-HHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccCC----CCH-
Confidence 1 1111111111233343333333433322 344555555 8889999999998888877654321110 000
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHH---HHhChhhHHHHHHHHHHhhcC---
Q 000143 1782 DGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAII---EVLGRDKRNEVLAALYMVRSD--- 1855 (2058)
Q Consensus 1782 ~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~---~~Lg~~~~~~vL~~L~~~~~D--- 1855 (2058)
..++.......+...+. .. .........+. +.+.....+ ...+..
T Consensus 675 ------------------~~~l~~~~~~~~~~~~~--~~---~~~~~~~~~i~~~f~~l~~~~~~------~~~~~~~~~ 725 (997)
T 1vsy_5 675 ------------------TTLLEAERNDPDGLGLP--LK---SVPEKVDAYIKKQFEIIKNLEDS------VVGLNPQQF 725 (997)
T ss_dssp ------------------HHHHHHHHSCSSSSCCC--SS---CCCHHHHHHHHHHHHHHTGGGGT------TSSCCSTTT
T ss_pred ------------------HHHHHhhccccccccCc--cc---cCcchHHHHHHHHHHHHHHhhhc------ccccCcccc
Confidence 01111000000000000 00 00011111111 111100000 000000
Q ss_pred -CCHHHHHHHHHHHHHHHhhC----hhhHHHhHHH-HHHHHHHHhcCCCH-HHHHH-HHHHHHHHHHHh-CcchhhchHH
Q 000143 1856 -VSLSVRQAALHVWKTIVANT----PKTLKEIMPV-LMNTLISSLASSSS-ERRQV-AGRALGELVRKL-GERVLPSIIP 1926 (2058)
Q Consensus 1856 -~~~~VR~aA~~~l~~lv~~~----~~~l~~~l~~-L~~~l~~~L~~~~~-~~R~~-A~~~Lg~L~~~l-g~~~l~~llp 1926 (2058)
.+...+ .+..++.=+.... ...+.++++. ++|.+.......+. +.... |..++..+.... .....+.++.
T Consensus 726 ~~s~y~~-~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~ 804 (997)
T 1vsy_5 726 IKTDYFY-RTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVD 804 (997)
T ss_dssp TTSHHHH-HHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHH
T ss_pred chHHHHH-HHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 011111 0111111111111 2235566665 66666554444433 33333 334443332111 1223455555
Q ss_pred HHhhhcC-CCChhHHHHHHHHHHHHHH-h---hChhhhHhHHhhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHhCh-h
Q 000143 1927 ILSRGLK-DPSASRRQGVCIGLSEVMA-S---AGKSQLLSFMDELIPTIRTALCDSI-LEVRESAGLAFSTLFKSAGM-Q 1999 (2058)
Q Consensus 1927 ~L~~~l~-d~~~~vR~~a~~aL~eii~-~---~~~~~l~~~~~~ll~~L~~~L~D~d-~~VR~~Aa~a~~~l~~~~g~-~ 1999 (2058)
.+.+..+ +++. .|..+..-+.-+.- + ++.+. ...+...+..+|.|+. .+||+.|+.+++.+.+..+. .
T Consensus 805 ~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~----~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~ 879 (997)
T 1vsy_5 805 YVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE----KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQ 879 (997)
T ss_dssp HSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH----HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHH
T ss_pred HHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchh
Confidence 5555554 4456 88877665433322 1 12221 1567888888999999 99999999999999876523 4
Q ss_pred hHHHHHHHHHHhcCC---C-----------cchHHHHHHHHHHHhhcCCc-cchhhhhh
Q 000143 2000 AIDEIVPTLLHALED---D-----------QTSDTALDGLKQILSVRTTA-VLPHILPK 2043 (2058)
Q Consensus 2000 ~~~~ilp~Ll~~L~~---~-----------~~~~~al~aL~~i~~~~~~~-~lp~lip~ 2043 (2058)
..++++..+...+.. . ..+..++-||+.++...|=. +.|.-+|.
T Consensus 880 ~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~ 938 (997)
T 1vsy_5 880 PLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPK 938 (997)
T ss_dssp HHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHH
T ss_pred hHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHH
Confidence 455666766666522 1 13568999999999776533 23444443
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-06 Score=105.36 Aligned_cols=211 Identities=16% Similarity=0.141 Sum_probs=158.5
Q ss_pred HHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc-------chHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHH
Q 000143 1301 VVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-------EAPTLVSRLLDQLMKS---------DKYGERRGAAFGLAG 1364 (2058)
Q Consensus 1301 iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~-------~~~~~v~~Ll~~L~~~---------~~~~vR~~Aa~~L~~ 1364 (2058)
+...|+.-|-++.|++|..++-+|..+++..+. ...++.-.++..+.-+ --..+|..++++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 788899999999999999999999988876531 1124445555544422 135799999999999
Q ss_pred HHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000143 1365 VVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAA 1444 (2058)
Q Consensus 1365 l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al 1444 (2058)
+ ..+..+ ..++..+...+..+ .|++|++++.++.++.+- +.. ++.+++.++.+++|.+++||..|+.++
T Consensus 255 L-~hLp~e----~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL~DL----L~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetL 323 (800)
T 3oc3_A 255 I-YPLIGP----NDIIEQLVGFLDSG-DWQVQFSGLIALGYLKEF----VED-KDGLCRKLVSLLSSPDEDIKLLSAELL 323 (800)
T ss_dssp H-TTTSCS----CCHHHHHTTGGGCS-CHHHHHHHHHHHHHTGGG----CCC-HHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred H-HhCChh----HHHHHHHHhhcCCC-CeeehhhhHHHHHHHHHH----HHH-HHHHHHHHHhhcCCcccHHHHHHHHHh
Confidence 9 777655 35666555544444 899999999999988222 222 788999999999999999999999999
Q ss_pred HHHHHhhhhhhHHhHHHHHHHhccCC-Ch-HHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHH
Q 000143 1445 RAMMSQLSAQGVKLVLPSLLKGLEDK-AW-RTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTA 1522 (2058)
Q Consensus 1445 ~~l~~~l~~~~v~~llp~Ll~~L~~~-~~-~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~a 1522 (2058)
.-++ .++.++.++..+++.|.+- +- ..-...+.+|+.++...+. ....+.++|.|...+..+-+.||.++.++
T Consensus 324 iPIA---~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL~T 398 (800)
T 3oc3_A 324 CHFP---ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSILNM 398 (800)
T ss_dssp TTSC---CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHHHH
T ss_pred hhhc---chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 8887 4456788888888887642 22 3334457788888876542 22235899999999999999999999999
Q ss_pred HHHHH
Q 000143 1523 LQQVG 1527 (2058)
Q Consensus 1523 L~~l~ 1527 (2058)
+..|.
T Consensus 399 L~tfL 403 (800)
T 3oc3_A 399 VKNLS 403 (800)
T ss_dssp TTTCC
T ss_pred HHHHH
Confidence 87765
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.40 E-value=9.7e-06 Score=99.32 Aligned_cols=227 Identities=15% Similarity=0.111 Sum_probs=159.2
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hhH--HhHHHHH
Q 000143 1392 SAKRREGALLAFECLCEKLGRLFEPYV---IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSL 1463 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~~~~p~l---~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~v--~~llp~L 1463 (2058)
++..++.|..++..++..-.. ....+ ..++|.|+..+..+++.++..|..+|..++..-.. ..+ ...+|.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~-~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVA-NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHH-HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHH-HHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 456788888888888743221 22222 35799999999999999999999999999753111 222 3568999
Q ss_pred HHhc-cCCChHHHHHHHHHHHHHHhhChhh-Hhhh-hhhHHHHHHHHhcCCCH----HHHHHHHHHHHHHHhhc-CchhH
Q 000143 1464 LKGL-EDKAWRTKQSSVQLLGAMAYCAPQQ-LSQC-LPKIVPKLTEVLTDTHP----KVQSAGQTALQQVGSVI-KNPEI 1535 (2058)
Q Consensus 1464 l~~L-~~~~~~~R~~a~~~Lg~la~~~p~~-l~~~-L~~Iip~L~~~L~D~~~----~VR~aA~~aL~~l~~~~-~~~~i 1535 (2058)
++.| .+.+...+..++.+|..++.++++. ..-. -...+|.|.+++.+.++ .|++.|+.+|..++..+ ++++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 9874 5678889999999999999855432 1111 25789999999987654 59999999999988632 11111
Q ss_pred HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000143 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2058)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p 1615 (2058)
|.. +. -...+|.|...+.+.+..+++.|+.++.+++. ++++....
T Consensus 256 ------------------~~~---i~------------~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~--~~~~~~~~ 300 (354)
T 3nmw_A 256 ------------------RQI---LR------------ENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA--RNPKDQEA 300 (354)
T ss_dssp ------------------HHH---HH------------TTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCHHHHHH
T ss_pred ------------------HHH---HH------------HcCCHHHHHHHHcCCChHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 111 00 01246777777888888899999999999874 23222222
Q ss_pred hH-hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccC
Q 000143 1616 YI-GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEEN 1654 (2058)
Q Consensus 1616 yl-~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~ 1654 (2058)
.. ...+|.|..++.+++..+|+.|+.+|..++..-+..|
T Consensus 301 i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 22 3578999999999999999999999999997654443
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.2e-06 Score=99.76 Aligned_cols=196 Identities=15% Similarity=0.195 Sum_probs=141.6
Q ss_pred HHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCC
Q 000143 1777 LPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDV 1856 (2058)
Q Consensus 1777 lp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~ 1856 (2058)
+| +.+.+.+.+|..|..+++-+..++....... .+++ ....++ .....+.....|.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~--------~~~~----------~~~~~~-----~~~~~lkk~l~Ds 67 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDI--------SRDD----------NIQIYW-----RDPTLFAQYITDS 67 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------------------------CCTT-----SCTHHHHHHTTCS
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccc--------cchh----------HHHHHH-----HHHHHHHHHhccc
Confidence 45 6778899999999999998888753211000 0000 000011 1222333456799
Q ss_pred CHHHHHHHHHHHHHHHhhCh------hhHHHhHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHh
Q 000143 1857 SLSVRQAALHVWKTIVANTP------KTLKEIMPVLMNTLISS-LASSSSERRQVAGRALGELVRKLGERVLPSIIPILS 1929 (2058)
Q Consensus 1857 ~~~VR~aA~~~l~~lv~~~~------~~l~~~l~~L~~~l~~~-L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~ 1929 (2058)
+..|...++.++..++...+ .....++..+++.++.. +++....+|..+..++-.++...+. ...+++.+.
T Consensus 68 N~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~~~~~e~l~ 145 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--ITQSVELVI 145 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--SHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--HHHHHHHHH
Confidence 99999999999999886443 23445667777777754 8999999999999999888875432 345667778
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhhChhh--hHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh
Q 000143 1930 RGLKDPSASRRQGVCIGLSEVMASAGKSQ--LLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM 1998 (2058)
Q Consensus 1930 ~~l~d~~~~vR~~a~~aL~eii~~~~~~~--l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~ 1998 (2058)
.++++.+|.+|..++..|..++...|... ..+.++.+++.+.+++.|+|++||++|..+++.++.++|.
T Consensus 146 ~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~ 216 (278)
T 4ffb_C 146 PFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN 216 (278)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence 88899999999999999999998877543 3445677888888999999999999999999999998885
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.4e-05 Score=91.96 Aligned_cols=182 Identities=17% Similarity=0.229 Sum_probs=140.4
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-------hh
Q 000143 1462 SLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-------PE 1534 (2058)
Q Consensus 1462 ~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-------~~ 1534 (2058)
.+...+.+.+|+.+..+++.|.......++.+...++-+++-+.-.+.|+|+.|-..+++.|..+...+.+ .+
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e 129 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE 129 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 34556778899999999999999888888777777766666655566799999999999999998765542 23
Q ss_pred HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchh
Q 000143 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMI 1614 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~ 1614 (2058)
...++|.|+..+.|+.+.+|+.+..+... ...+ .....+.+.+..++++.++++|..++..++.+....|-+
T Consensus 130 a~~~lP~LveKlGd~k~~vR~~~r~il~~--l~~v--~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---- 201 (266)
T 2of3_A 130 VSAFVPYLLLKTGEAKDNMRTSVRDIVNV--LSDV--VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---- 201 (266)
T ss_dssp HHHHHHHHHHGGGCSSHHHHHHHHHHHHH--HHHH--HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHH--HHHH--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence 57899999999999999888655544431 0001 123457888888999999999999999988887754442
Q ss_pred hhHhhhh---HHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1615 PYIGLLL---PEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1615 pyl~~ll---~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
| ...+ |.+...+.|++..||.+|..++..+....|+.
T Consensus 202 ~--~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 202 P--LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp G--GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred c--cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 1 2356 88889999999999999999999999999887
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1e-05 Score=96.43 Aligned_cols=168 Identities=17% Similarity=0.150 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHhcccchhhH-HHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHhhhhhh---H-HhHHHHHHHhc
Q 000143 1394 KRREGALLAFECLCEKLGRLFEPYV-IQMLPLLLV-AFSDQVVAVREAAECAARAMMSQLSAQG---V-KLVLPSLLKGL 1467 (2058)
Q Consensus 1394 ~~R~~al~al~~L~~~lg~~~~p~l-~~llp~Ll~-~l~D~~~~VR~aA~~al~~l~~~l~~~~---v-~~llp~Ll~~L 1467 (2058)
..|..|+..|..+++..... ..+. ...+|.++. .+..+++.||..|+++++.++...+... + ...+|.|+..+
T Consensus 55 e~k~~Al~~L~~lv~~~dna-~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHH-HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhH-HHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 56777888777777643310 1111 246788888 9999999999999999999987654321 2 36889999999
Q ss_pred cC-CChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHH
Q 000143 1468 ED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPT 1541 (2058)
Q Consensus 1468 ~~-~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~ 1541 (2058)
.+ .+..+|..|+.+|+.++.+.+....... ...+|.|..+|+++++.|+..|+++|..++..-.+ ..+ ...+|.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 84 5788999999999999987765433322 36899999999999999999999999999876221 122 468899
Q ss_pred HHhccCCCChhHH-HHHHHHHh
Q 000143 1542 LLMGLTDPNDHTK-YSLDILLQ 1562 (2058)
Q Consensus 1542 Ll~~l~d~~~~vr-~al~~L~~ 1562 (2058)
|+..+..++..++ .++.+++.
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~ 235 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCS 235 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHH
T ss_pred HHHHHcCCChhHHHHHHHHHHH
Confidence 9999998887776 46666554
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-05 Score=97.16 Aligned_cols=218 Identities=16% Similarity=0.118 Sum_probs=155.6
Q ss_pred CHHHHHHHHHhhHhhHhhcc---cch---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc---cccchhchHHHH
Q 000143 1313 SEAVQRAVSSCLSPLMQSMQ---DEA---PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATL 1383 (2058)
Q Consensus 1313 ~~~V~~av~~~L~~l~~~~~---~~~---~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~---~~l~~~~il~~L 1383 (2058)
+..+|+.++.+|..+..... ..+ ...++.++..|. +++..++..|+.+|..+..+-+. ..+.....+|.|
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 35688888888888764321 111 245777777554 56789999999999999764111 122234678888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcCCCCH----HHHHHHHHHHHHHHHhh--hhhh
Q 000143 1384 REGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFSDQVV----AVREAAECAARAMMSQL--SAQG 1455 (2058)
Q Consensus 1384 ~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l--~~llp~Ll~~l~D~~~----~VR~aA~~al~~l~~~l--~~~~ 1455 (2058)
.+.+....+...++.|+.++..++......-.... ...+|.|...+.+.++ .+++.|..++..++... .++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 88754434788899998999888763321112222 3588999988886654 58898999998887521 2221
Q ss_pred ---H--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1456 ---V--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1456 ---v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
+ ...+|.+++.|.+.+..++..|+.+|+.++...+++..... ...+|.|.+++.+.++.+|+.|+++|..++..
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 2 34789999999999999999999999999876555432211 36899999999999999999999999999876
Q ss_pred cC
Q 000143 1530 IK 1531 (2058)
Q Consensus 1530 ~~ 1531 (2058)
-+
T Consensus 336 ~~ 337 (354)
T 3nmw_A 336 RP 337 (354)
T ss_dssp CC
T ss_pred CH
Confidence 43
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=95.52 Aligned_cols=175 Identities=18% Similarity=0.137 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHhhhCcc-ccchhchHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHHHHHHHH
Q 000143 1353 GERRGAAFGLAGVVKGFGIS-SLKKYGIAATLRE-GLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QMLPLLLVA 1428 (2058)
Q Consensus 1353 ~vR~~Aa~~L~~l~~~~g~~-~l~~~~il~~L~~-~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~llp~Ll~~ 1428 (2058)
..|..|...|..++...... .+.....+|.+.. .+.+. ++.+|+.|+.+++.++..-.. ....+. ..+|.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~-~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH-HHHHHHHCCCHHHHHHH
Confidence 45666777777766543211 1112255677777 77766 899999999999999864321 222332 478888888
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHH
Q 000143 1429 FS-DQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVP 1502 (2058)
Q Consensus 1429 l~-D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip 1502 (2058)
+. +++..+|..|.+++..++...++. .+ ...+|.|...+.+.+..+|..|+.+|+.++.+.++...... ..++|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 87 458899999999999998755442 23 35789999999999999999999999999988664422211 36889
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1503 KLTEVLTDTHPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1503 ~L~~~L~D~~~~VR~aA~~aL~~l~~~ 1529 (2058)
.|+.+|.++++.||..|+.+|+.++..
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999875
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00039 Score=76.05 Aligned_cols=219 Identities=12% Similarity=0.048 Sum_probs=160.7
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh----cccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCccc
Q 000143 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHY----ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGK 1812 (2058)
Q Consensus 1737 ~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~----~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k 1812 (2058)
..+..+...+.|+++.++..++.++..+++.. ....++.++|.+.+.+.+++.++-..|+++++.++..+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v------ 106 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV------ 106 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC------
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC------
Confidence 36677888899999999999999999998874 33356779999999999999999999999999997321
Q ss_pred ccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHH
Q 000143 1813 ALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS 1892 (2058)
Q Consensus 1813 ~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~ 1892 (2058)
-++++.+..+..++.....+.++.++..+...++.+-. ....+.+.+.+.+
T Consensus 107 -----------------------pL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv------~~~~~~V~~~l~s 157 (265)
T 3b2a_A 107 -----------------------PMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQP------LEDSKLVRTYINE 157 (265)
T ss_dssp -----------------------CBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCB------SCCCHHHHHHHHH
T ss_pred -----------------------CCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCc------ccchHHHHHHHHH
Confidence 02334455566666666668888899999888887611 1334556666666
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHhCcc-hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHH
Q 000143 1893 SLASSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIR 1971 (2058)
Q Consensus 1893 ~L~~~~~~~R~~A~~~Lg~L~~~lg~~-~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~ 1971 (2058)
.+.+.+..++.+|..++-++...-++. ++..++.-+...++++|+.++.-+..++-+++..-=.+...+-+..+...+.
T Consensus 158 Ll~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~ 237 (265)
T 3b2a_A 158 LVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVD 237 (265)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHH
Confidence 679999999999999999998877643 5677777777888888999999998888877654222223333344444444
Q ss_pred HHh-cCCCHHHHHHHHHHHH
Q 000143 1972 TAL-CDSILEVRESAGLAFS 1990 (2058)
Q Consensus 1972 ~~L-~D~d~~VR~~Aa~a~~ 1990 (2058)
... -...|.+|.-|-..-.
T Consensus 238 ~l~~~~~~~~~~~ka~~v~~ 257 (265)
T 3b2a_A 238 GLVYREGAPIIRLKAKKVSD 257 (265)
T ss_dssp HGGGCSSCHHHHHHHHHHHH
T ss_pred HHHHhcCChhHHHHHHHHHH
Confidence 444 5678888888854433
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00088 Score=73.31 Aligned_cols=178 Identities=12% Similarity=0.098 Sum_probs=142.9
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh--hh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLF-EPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS--AQ 1454 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~-~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~--~~ 1454 (2058)
+.+..+...+.++ |+.++..++++++.+....+..+ ...+..++|.++..+.++++.|--.|.+|++.+....+ ++
T Consensus 33 ~~l~~L~~LL~dk-D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGED-DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhcc-chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4566667777665 99999999999999998875433 34577899999999999999999999999999997654 46
Q ss_pred hHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchh
Q 000143 1455 GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 1534 (2058)
Q Consensus 1455 ~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~ 1534 (2058)
++..+...+..-+.+++.-.+..+.+.+|.+- .....+.++..+..++...++.|+.+|..++-.++...+++.
T Consensus 112 ~y~Kl~~aL~dlik~~~~il~~eaae~Lgklk------v~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~ 185 (265)
T 3b2a_A 112 TFLKAAKTLVSLLESPDDMMRIETIDVLSKLQ------PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG 185 (265)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCC------BSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhCcCC------cccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence 67888888888889999999999999999881 222335677778888888899999999999999999877764
Q ss_pred -HHhHHHHHHhccCCCChhHH-HHHHHHHh
Q 000143 1535 -IASLVPTLLMGLTDPNDHTK-YSLDILLQ 1562 (2058)
Q Consensus 1535 -i~~lvp~Ll~~l~d~~~~vr-~al~~L~~ 1562 (2058)
+..++.-+-..+..+++.++ .|++.+-.
T Consensus 186 i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ 215 (265)
T 3b2a_A 186 HLTLILDEIPSLLQNDNEFIVELALDVLEK 215 (265)
T ss_dssp CGGGTTTTHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46666666777777788776 47776654
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.90 E-value=8.3e-05 Score=89.88 Aligned_cols=282 Identities=10% Similarity=0.025 Sum_probs=133.2
Q ss_pred HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH
Q 000143 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI 1535 (2058)
Q Consensus 1456 v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i 1535 (2058)
...+.+.+.+.+.+++...|+.....+..++.. +++. + -+++.+.+-++|+++.+|..|+.+|+.+.. ...+
T Consensus 66 ~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~---i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~---~~m~ 137 (355)
T 3tjz_B 66 ATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDV---I-IVTSSLTKDMTGKEDSYRGPAVRALCQITD---STML 137 (355)
T ss_dssp HHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCG---G-GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC---TTTH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHH---H-HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC---HHHH
Confidence 456777888888999998888877777766654 2221 2 556777888889999999999998888753 1122
Q ss_pred HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh
Q 000143 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615 (2058)
Q Consensus 1536 ~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p 1615 (2058)
+. +.+.+.+.+.|+++.||+.|+-+...+... .|+
T Consensus 138 ~~---------------------------------------l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~--~pe---- 172 (355)
T 3tjz_B 138 QA---------------------------------------IERYMKQAIVDKVPSVSSSALVSSLHLLKC--SFD---- 172 (355)
T ss_dssp HH---------------------------------------HHHHHHHHHTCSSHHHHHHHHHHHHHHTTT--CHH----
T ss_pred HH---------------------------------------HHHHHHHHcCCCCHHHHHHHHHHHHHHhcc--CHH----
Confidence 33 444555566666666777766665555431 221
Q ss_pred hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHH
Q 000143 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFE 1695 (2058)
Q Consensus 1616 yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~ 1695 (2058)
....+++.+..++.|.++-|...|..++..+... +...+..+++.+.+. .-.++-........++.++..-.++.-.
T Consensus 173 ~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~~kLv~~l~~~--~l~~~~~q~~llr~l~~~~~~d~~~~~~ 249 (355)
T 3tjz_B 173 VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAVSKMISKFTRH--GLKSPFAYCMMIRVASRQLEDEDGSRDS 249 (355)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHSS--CCSCHHHHHHHHHHHTCC----------
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHHHHHHHHHhcC--CCcChHHHHHHHHHHHHhccccchhhHH
Confidence 2345677777788888888876555555555432 111222333333221 0001111111111111111110011124
Q ss_pred HhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhc
Q 000143 1696 HILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775 (2058)
Q Consensus 1696 ~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~ 1775 (2058)
.+++.+...+++.++.|--.++.++..+...-.. .+......+...+..+++++|-.+++.+..++.... ..+..
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P-~~v~~ 324 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP-SAVTA 324 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC--------------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc-HHHHH
Confidence 5666666777788888888888877766552222 223345556666777788899999999998876543 45556
Q ss_pred hHHhHhhhcCCCCHHHHHHHHHH
Q 000143 1776 LLPAVEDGIFNDNWRIRQSSVEL 1798 (2058)
Q Consensus 1776 llp~L~~~l~d~~~~vR~sav~l 1798 (2058)
.-..+++++.|.|..|+.-|+..
T Consensus 325 ~n~~ie~li~d~n~sI~t~Aitt 347 (355)
T 3tjz_B 325 CNLDLENLVTDANRSIATLAITT 347 (355)
T ss_dssp -----------------------
T ss_pred HHHHHHHHccCCcHhHHHHHHHH
Confidence 67788889999988877766543
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.84 E-value=3.5e-06 Score=87.91 Aligned_cols=119 Identities=18% Similarity=0.244 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1418 VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1418 l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
...-++.+...+.|+++.||..|..+++.+. .. -++.+.+.+.+++|.+|..++.+||.+..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~---------- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMG----DE----AFEPLLESLSNEDWRIRGAAAWIIGNFQD---------- 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCS----ST----THHHHHHGGGCSCHHHHHHHHHHHGGGCS----------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhC----ch----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC----------
Confidence 3455677888899999999999988877552 22 14888899999999999999999998752
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHH
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILL 1561 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~ 1561 (2058)
+..++.|...++|+++.||..|+++|+.++. ...+|.|...+.|++..+| .+..+|.
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-------~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 2567788888999999999999999999863 2456777777788877776 4555443
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.83 E-value=3.4e-06 Score=96.87 Aligned_cols=188 Identities=19% Similarity=0.171 Sum_probs=102.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHH
Q 000143 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQM 1421 (2058)
Q Consensus 1342 Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~l 1421 (2058)
++..+..++++.+|..++..+ ++. .+...++|+ ++.+|..+...+ +.
T Consensus 54 l~~~ll~d~~~~VR~~AA~~l-------~~~---------~l~~L~~D~-~~~VR~~aA~~L-------~~--------- 100 (244)
T 1lrv_A 54 LAVQYLADPFWERRAIAVRYS-------PVE---------ALTPLIRDS-DEVVRRAVAYRL-------PR--------- 100 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTS-------CGG---------GGGGGTTCS-SHHHHHHHHTTS-------CS---------
T ss_pred HHHHHhcCCCHHHHHHHHHhC-------CHH---------HHHHHccCc-CHHHHHHHHHHC-------CH---------
Confidence 344455666788888777643 111 122334444 777887765432 21
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHH
Q 000143 1422 LPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIV 1501 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Ii 1501 (2058)
+.+...++|+++.||.++...+ +.. .+...+.|++|.+|.+++..+ +. .
T Consensus 101 -~~L~~ll~D~d~~VR~~aA~~l-------~~~-------~L~~L~~D~d~~VR~~aA~~l-------~~-------~-- 149 (244)
T 1lrv_A 101 -EQLSALMFDEDREVRITVADRL-------PLE-------QLEQMAADRDYLVRAYVVQRI-------PP-------G-- 149 (244)
T ss_dssp -GGGGGTTTCSCHHHHHHHHHHS-------CTG-------GGGGGTTCSSHHHHHHHHHHS-------CG-------G--
T ss_pred -HHHHHHHcCCCHHHHHHHHHhC-------CHH-------HHHHHHcCCCHHHHHHHHHhc-------CH-------H--
Confidence 2345567788888887776532 211 123335677788877766521 11 1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCChhhHhhHHHH
Q 000143 1502 PKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPI 1580 (2058)
Q Consensus 1502 p~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~-al~~L~~~~f~~~~~~~~l~~llp~ 1580 (2058)
.+..+++|+++.||.++...+ .. +.+...+.|+++.||. ++..+. .+.
T Consensus 150 -~l~~l~~D~d~~VR~~aa~~l-------~~-------~ll~~ll~D~d~~VR~aaa~~l~----------------~~~ 198 (244)
T 1lrv_A 150 -RLFRFMRDEDRQVRKLVAKRL-------PE-------ESLGLMTQDPEPEVRRIVASRLR----------------GDD 198 (244)
T ss_dssp -GGGGTTTCSCHHHHHHHHHHS-------CG-------GGGGGSTTCSSHHHHHHHHHHCC----------------GGG
T ss_pred -HHHHHHcCCCHHHHHHHHHcC-------CH-------HHHHHHHcCCCHHHHHHHHHhCC----------------HHH
Confidence 223456778888887776651 11 2334556777777763 332210 123
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1581 L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
+...++|.+|.||..++..++ .+.+..+ .|++|.||..+...||
T Consensus 199 L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 199 LLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 445567777777776654321 1334344 7777777777766554
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00046 Score=83.42 Aligned_cols=248 Identities=13% Similarity=0.110 Sum_probs=153.1
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHh
Q 000143 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKL 1458 (2058)
Q Consensus 1379 il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~ 1458 (2058)
+...+.+.+.++ |...|.-+...+..+++... -+.-+...+.+.+.|+++.+|-.|..++..+. .++-++.
T Consensus 69 lf~~v~kl~~s~-d~~lKrLvYLyl~~~~~~~~-----e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~---~~~m~~~ 139 (355)
T 3tjz_B 69 AFFAMTKLFQSN-DPTLRRMCYLTIKEMSCIAE-----DVIIVTSSLTKDMTGKEDSYRGPAVRALCQIT---DSTMLQA 139 (355)
T ss_dssp HHHHHHGGGGCC-CHHHHHHHHHHHHHHTTTSS-----CGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHC---CTTTHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCHH-----HHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCC---CHHHHHH
Confidence 444556667766 78888877776666555421 12256678888999999999999998888773 4455678
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCch-hHHh
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNP-EIAS 1537 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~-~i~~ 1537 (2058)
+.+.+.+.+.|.+..+|+.|+.+...+....|+... ..++.+.++++|.++.|...|..++..+... ++ .+..
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~--d~~a~~k 213 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK----RWVNEAQEAASSDNIMVQYHALGLLYHVRKN--DRLAVSK 213 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhh--chHHHHH
Confidence 889999999999999999999999999888887654 4667788899999999999888888888653 22 3455
Q ss_pred HHHHHHhc-cCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh
Q 000143 1538 LVPTLLMG-LTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY 1616 (2058)
Q Consensus 1538 lvp~Ll~~-l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py 1616 (2058)
+++.+.+. +.+|-..+ .-+..+.. +....+...-..+++.+...++..+..|..+|+.++-.+... ....
T Consensus 214 Lv~~l~~~~l~~~~~q~-~llr~l~~--~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~--~~~~---- 284 (355)
T 3tjz_B 214 MISKFTRHGLKSPFAYC-MMIRVASR--QLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC--SAKE---- 284 (355)
T ss_dssp HHHHHHSSCCSCHHHHH-HHHHHHTC--C-----------------CCCCCSSHHHHHHHHHHHTC--------------
T ss_pred HHHHHhcCCCcChHHHH-HHHHHHHH--hccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC--CHHH----
Confidence 56655442 21221111 22222221 222111122345777888888888999999988888765441 1111
Q ss_pred HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l 1650 (2058)
+...+..+...+..+++++|..|.+.+..++..-
T Consensus 285 ~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~ 318 (355)
T 3tjz_B 285 LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKH 318 (355)
T ss_dssp ---CCCTHHHHHHSSSSSSHHHHHHCC-------
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHC
Confidence 2234455566677788899999999888887643
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=97.74 E-value=1.3e-05 Score=92.00 Aligned_cols=185 Identities=17% Similarity=0.078 Sum_probs=126.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHHHh
Q 000143 1506 EVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRG 1584 (2058)
Q Consensus 1506 ~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~-al~~L~~~~f~~~~~~~~l~~llp~L~~~ 1584 (2058)
.+++|+++.||..+...+. ...+...+.|++..||. +...+. .+.+...
T Consensus 57 ~ll~d~~~~VR~~AA~~l~--------------~~~l~~L~~D~~~~VR~~aA~~L~----------------~~~L~~l 106 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYSP--------------VEALTPLIRDSDEVVRRAVAYRLP----------------REQLSAL 106 (244)
T ss_dssp GGTTCSSHHHHHHHHTTSC--------------GGGGGGGTTCSSHHHHHHHHTTSC----------------SGGGGGT
T ss_pred HHhcCCCHHHHHHHHHhCC--------------HHHHHHHccCcCHHHHHHHHHHCC----------------HHHHHHH
Confidence 4568999999999988641 12356678999999984 332211 1245667
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHh
Q 000143 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLD 1664 (2058)
Q Consensus 1585 L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~ 1664 (2058)
++|+++.||..++.. + .. +.+..++.|+++.||..++..+ +. .++.
T Consensus 107 l~D~d~~VR~~aA~~---l----~~------------~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~ 152 (244)
T 1lrv_A 107 MFDEDREVRITVADR---L----PL------------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLF 152 (244)
T ss_dssp TTCSCHHHHHHHHHH---S----CT------------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGG
T ss_pred HcCCCHHHHHHHHHh---C----CH------------HHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHH
Confidence 899999999987652 1 11 1234557899999999988732 22 1334
Q ss_pred hcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHH
Q 000143 1665 ALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILD 1744 (2058)
Q Consensus 1665 ~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~ 1744 (2058)
.+..|+++.+|..++.. ++.+ .+...+.|+++.||..++..+ + .+.+..
T Consensus 153 ~l~~D~d~~VR~~aa~~-------l~~~-------ll~~ll~D~d~~VR~aaa~~l-------~----------~~~L~~ 201 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKR-------LPEE-------SLGLMTQDPEPEVRRIVASRL-------R----------GDDLLE 201 (244)
T ss_dssp GTTTCSCHHHHHHHHHH-------SCGG-------GGGGSTTCSSHHHHHHHHHHC-------C----------GGGGGG
T ss_pred HHHcCCCHHHHHHHHHc-------CCHH-------HHHHHHcCCCHHHHHHHHHhC-------C----------HHHHHH
Confidence 55568889999988775 2222 233566889999999888642 1 145677
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHH
Q 000143 1745 GLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2058)
Q Consensus 1745 ~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~ 1800 (2058)
++.|++..||..+..++. .+.|... .|++|.||..+.+.+|
T Consensus 202 Ll~D~d~~VR~~aa~~l~--------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 202 LLHDPDWTVRLAAVEHAS--------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGCSSHHHHHHHHHHSC--------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHcCCCHHHHHHHHHcCC--------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 789999999999888753 2455555 8999999999876544
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.74 E-value=2.3e-06 Score=89.22 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=88.4
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHH
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVK 1457 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~ 1457 (2058)
.-.+.+...++++ ++.+|..|+.+++.+ +. + -++.++..+.|+++.||..|..+++.+.. +
T Consensus 12 ~~~~~l~~~L~~~-~~~vR~~A~~~L~~~----~~---~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~ 72 (131)
T 1te4_A 12 SGLVPRGSHMADE-NKWVRRDVSTALSRM----GD---E----AFEPLLESLSNEDWRIRGAAAWIIGNFQD-------E 72 (131)
T ss_dssp ---------CCSS-CCCSSSSCCSSTTSC----SS---T----THHHHHHGGGCSCHHHHHHHHHHHGGGCS-------H
T ss_pred ccHHHHHHHhcCC-CHHHHHHHHHHHHHh----Cc---h----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------H
Confidence 4456677777776 788898887766543 21 1 14778888999999999999999887632 3
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2058)
..++.+...+.|++|.+|..++.+|+.+.. +..++.|.+.++|+++.||..|+++|+.
T Consensus 73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 457888888899999999999999998752 3567888889999999999999999865
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.02 Score=73.21 Aligned_cols=185 Identities=19% Similarity=0.215 Sum_probs=122.2
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhcc
Q 000143 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR-NSAKRREGALLAFECLCEKLGR 1412 (2058)
Q Consensus 1334 ~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~-~~~~~R~~al~al~~L~~~lg~ 1412 (2058)
...+.++.+.+.+.++.-...||.|..+|..+.+.+....- ..-++.+...++++ +|...-..++..+..+..
T Consensus 18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg--~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~---- 91 (651)
T 3grl_A 18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG--IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIIS---- 91 (651)
T ss_dssp CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH--HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHC----
T ss_pred ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh--hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhC----
Confidence 35688999999999988899999999999999876532211 13356666666543 344433333333322211
Q ss_pred cchhhHHHHHHHHHHHcCCCCHH--------HHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHH
Q 000143 1413 LFEPYVIQMLPLLLVAFSDQVVA--------VREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484 (2058)
Q Consensus 1413 ~~~p~l~~llp~Ll~~l~D~~~~--------VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~ 1484 (2058)
.|+++. ..+.+.+-.+.+... ..-++.++..+++.+..+|..++++|..
T Consensus 92 -----------------~~~~~~~~~~~~~~~~~~~~~~~d~f~~~------~~~i~~Ll~lL~~~df~vR~~alqlL~~ 148 (651)
T 3grl_A 92 -----------------NDEEEEVEENSTRQSEDLGSQFTEIFIKQ------QENVTLLLSLLEEFDFHVRWPGVKLLTS 148 (651)
T ss_dssp -----------------CC--------------CHHHHHHHHHHHS------THHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred -----------------CCCcccccccccccchHHHHHHHHHHHcC------CccHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111110 011112222222211 3567889999999999999999999999
Q ss_pred HHhhChhhHhhhh---hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHH------hHHHHHHhccCCC
Q 000143 1485 MAYCAPQQLSQCL---PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIA------SLVPTLLMGLTDP 1549 (2058)
Q Consensus 1485 la~~~p~~l~~~L---~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~------~lvp~Ll~~l~d~ 1549 (2058)
++...|+....++ |.-++.|+.+|.|++..+|..++-.|..+... +++++ ..++.|+..+...
T Consensus 149 L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~--n~~iQklVAFEnaFe~Lf~Ii~~E 220 (651)
T 3grl_A 149 LLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS--NGAIQKIVAFENAFERLLDIITEE 220 (651)
T ss_dssp HHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC--CHHHHHHHHHhccHHHHHHHHHhc
Confidence 9999988766654 46789999999999999999999999999874 45443 3456666665543
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.048 Score=73.09 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=97.3
Q ss_pred chHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHH--HHH-HHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 000143 1378 GIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVI--QML-PLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1378 ~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~--~ll-p~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
.++|.+.. +++. ++..|..|+.++..|++.. .....+. .++ +.+..++.|++..||.+|..+++.++...+.+
T Consensus 35 ~i~Pll~~-L~S~-~~~~r~~A~~al~~l~~~~--~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 35 KILPVLKD-LKSP-DAKSRTTAAGAIANIVQDA--KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp TTHHHHHH-HSSS-CCSHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hHHHHHHH-cCCC-CHHHHHHHHHHHHHHHcCc--HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 56776654 6766 8899999999999998632 2222222 344 45566799999999999999999987654433
Q ss_pred hH-----HhHHHHHHHhccCC--------------C-------hHHHHHHHHHHHHHHhhChhhHhhh-hhhHHHHHHHH
Q 000143 1455 GV-----KLVLPSLLKGLEDK--------------A-------WRTKQSSVQLLGAMAYCAPQQLSQC-LPKIVPKLTEV 1507 (2058)
Q Consensus 1455 ~v-----~~llp~Ll~~L~~~--------------~-------~~~R~~a~~~Lg~la~~~p~~l~~~-L~~Iip~L~~~ 1507 (2058)
.. ..++|+|...+... . |..-..++.+|..++++..+.+... -...+|.++..
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~ 190 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFR 190 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHH
Confidence 22 34677776655311 0 1122345677888887776544321 12556666666
Q ss_pred hcC---CCHHHHHHHHHHHHHHHhh
Q 000143 1508 LTD---THPKVQSAGQTALQQVGSV 1529 (2058)
Q Consensus 1508 L~D---~~~~VR~aA~~aL~~l~~~ 1529 (2058)
|.+ ....|+.+|+++|..+.+.
T Consensus 191 L~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 191 LISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCcHHHHHHHHHHHHHHhcc
Confidence 532 3478999999999998774
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0034 Score=69.84 Aligned_cols=145 Identities=18% Similarity=0.170 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000143 1336 PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2058)
Q Consensus 1336 ~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~ 1415 (2058)
.+.+..+...|..++...+|..|+..|+.. . . ...+++.+...+.++++|.+|+.+..+++.++...+..
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~--~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----K--DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----T--SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----C--cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 345567778888888899999999977766 2 1 23788999885555559999999999999888644421
Q ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh-hhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHh
Q 000143 1416 PYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS-AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494 (2058)
Q Consensus 1416 p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~-~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~ 1494 (2058)
..++.+..-..|++..||..|.+.+........ ......++|.+.....|+++.+|++....|..+++..|+-+.
T Consensus 139 ----~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp ----TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 256777788999999999999888654322211 122366778777788899999999999999999887776544
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.46 Score=60.82 Aligned_cols=478 Identities=16% Similarity=0.172 Sum_probs=247.7
Q ss_pred hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCC---hhHHHHHHHHHhccccccCChhhH
Q 000143 1499 KIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN---DHTKYSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1499 ~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~---~~vr~al~~L~~~~f~~~~~~~~l 1574 (2058)
+-++.|..-+++ .-.+=|++|+.+|..+++..+...-..-+|.++..+.+.. +.++.++++|... |....+...
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l-~~~~~~~~~- 98 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNI-ISNDEEEEV- 98 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHH-HCCC------
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHH-hCCCCcccc-
Confidence 445555554443 3477799999999999876654444455677777765442 2345666666431 111100000
Q ss_pred hhHHHHHHHhhcCCCHHH-HHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc
Q 000143 1575 ALLVPIVHRGLRERSAET-KKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE 1653 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~v-r~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~ 1653 (2058)
. +.++.. ...+...-..+. .+ +.-++.|..+++..+..+|-.+.+.|..++..-++.
T Consensus 99 ~-----------~~~~~~~~~~~~~~~d~f~---~~--------~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~ 156 (651)
T 3grl_A 99 E-----------ENSTRQSEDLGSQFTEIFI---KQ--------QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ 156 (651)
T ss_dssp --------------------CHHHHHHHHHH---HS--------THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH
T ss_pred c-----------ccccccchHHHHHHHHHHH---cC--------CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH
Confidence 0 000000 000011111111 11 245788888999999999999999999999876653
Q ss_pred ------CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh----HHHHhhHHHHHhhccCC----hhHHHHHHHH
Q 000143 1654 ------NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV----YFEHILPDIIRNCSHQR----ASVRDGYLTL 1719 (2058)
Q Consensus 1654 ------~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~----~l~~llp~Ll~~l~~~~----~~vR~~al~~ 1719 (2058)
.-|.-++.|++.|.+ .....|..+...|..+...-..- .++..++.+++.+.... ..+-+-++.+
T Consensus 157 ~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~l 235 (651)
T 3grl_A 157 VQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLIL 235 (651)
T ss_dssp HHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 245789999999984 45558998888888776543211 23455666666665543 3555666777
Q ss_pred HHHhHHHhchhHHHhHH--HHHHHHHHhccCCCH------HHHHH---HHHHHHHHHHHhcc---c-----ch--hchHH
Q 000143 1720 FKYLPRSLGVQFQNYLQ--QVLPAILDGLADENE------SVRDA---ALGAGHVLVEHYAT---T-----SL--PLLLP 1778 (2058)
Q Consensus 1720 l~~la~~~g~~f~pyl~--~ilp~Ll~~L~d~~~------~VR~~---a~~al~~lv~~~~~---~-----~l--~~llp 1778 (2058)
+..+...-... ..|+. ..+|.+...+..+++ ..... ++..++.++..-+. . .+ ..+++
T Consensus 236 l~nLLr~N~sN-Q~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~ 314 (651)
T 3grl_A 236 LQNLLKNNNSN-QNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQ 314 (651)
T ss_dssp HHHHHTTCHHH-HHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHhcCHHH-HHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHH
Confidence 77776542111 11221 134444455542221 12122 33444444332111 0 11 12566
Q ss_pred hHhhhcCCC--CHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHh-Ch-hhHHHHHHHHHHhh-
Q 000143 1779 AVEDGIFND--NWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVL-GR-DKRNEVLAALYMVR- 1853 (2058)
Q Consensus 1779 ~L~~~l~d~--~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~L-g~-~~~~~vL~~L~~~~- 1853 (2058)
.+.+.+... ...+|..++.++++++.... .....+.+.- +. ..+..++..+....
T Consensus 315 ~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~--------------------~~Q~~fa~~~vp~~~~~p~li~lL~~~~~ 374 (651)
T 3grl_A 315 QLCTILMATGVPADILTETINTVSEVIRGCQ--------------------VNQDYFASVNAPSNPPRPAIVVLLMSMVN 374 (651)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--------------------HHHHHHHHCEESSSSCEEHHHHHHHHHTC
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--------------------HHHHHHhhccCCCCCCcChHHHHHHHHhc
Confidence 677766544 67899999999999752110 0000000000 00 00112222232222
Q ss_pred cCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHH--------------HHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---
Q 000143 1854 SDVSLSVRQAALHVWKTIVANTPKTLKEIMPVL--------------MNTLISSLASSSSERRQVAGRALGELVRKL--- 1916 (2058)
Q Consensus 1854 ~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L--------------~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~l--- 1916 (2058)
......+|-+|..+++.++.+-+..-..+..++ -..+...+-+.++-.--.|+-.+..+...-
T Consensus 375 ~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~ 454 (651)
T 3grl_A 375 ERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ 454 (651)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence 334578899998888888754432111111111 011223333333322222333444433211
Q ss_pred -------------CcchhhchHHHHhhhcC-CCChhHHHHHHHHHHHHHHhhChhhhHhHH--hhHHHHHHHHhcC----
Q 000143 1917 -------------GERVLPSIIPILSRGLK-DPSASRRQGVCIGLSEVMASAGKSQLLSFM--DELIPTIRTALCD---- 1976 (2058)
Q Consensus 1917 -------------g~~~l~~llp~L~~~l~-d~~~~vR~~a~~aL~eii~~~~~~~l~~~~--~~ll~~L~~~L~D---- 1976 (2058)
|+. .-.+++.+...+. +.++.++.+-..-|..|+-.+ +.++.+|+ ..-++.|...+.+
T Consensus 455 K~~~l~v~l~~~~ge~-~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~-p~AV~dFL~~~s~l~~L~~~i~~~~~~ 532 (651)
T 3grl_A 455 KEQLLRVQLATSIGNP-PVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNC-PIAVTHFLHNSANVPFLTGQIAENLGE 532 (651)
T ss_dssp HHHHTTCBCCCCTTCC-CCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHSTTHHHHHHHHHHSCCCH
T ss_pred HHHHHhCcccccCCCC-cccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCC-hHHHHHHHcCCchHHHHHHHHHhccCc
Confidence 111 1234444444443 345666666666667676555 55777777 4456777776643
Q ss_pred CCHHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHhcCCCcchHHHHHHHHHH
Q 000143 1977 SILEVRESAGLAFSTLFKSAGMQ----AIDEIVPTLLHALEDDQTSDTALDGLKQI 2028 (2058)
Q Consensus 1977 ~d~~VR~~Aa~a~~~l~~~~g~~----~~~~ilp~Ll~~L~~~~~~~~al~aL~~i 2028 (2058)
.+.-|+-.++.-+|.+.+.-.++ ....+.+.+.+.+. +++-+.-+.++
T Consensus 533 ~~~lvqGL~a~LLGi~yef~~~~~~~~~R~~l~~ll~~riG----~d~y~~kl~~l 584 (651)
T 3grl_A 533 EEQLVQGLCALLLGISIYFNDNSLETYMKEKLKQLIEKRIG----KENFIEKLGFI 584 (651)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCCGGGCHHHHHHHHHHHTC----HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhccCCCcCccCHHHHHHHHHHhcC----HHHHHHHHHHH
Confidence 24568888999999988754332 22345555555553 44444444443
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.018 Score=65.42 Aligned_cols=198 Identities=15% Similarity=0.045 Sum_probs=121.7
Q ss_pred HHHHHHHcCCCCH--HHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhh---
Q 000143 1422 LPLLLVAFSDQVV--AVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQ--- 1492 (2058)
Q Consensus 1422 lp~Ll~~l~D~~~--~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~--- 1492 (2058)
+|.+...+..+++ .++..|..++..+....++. .+ ...+|.|++.|.+++..++..|+.+|..++...++.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 5667777776666 88888888888877543332 23 357899999999999999999999999999865532
Q ss_pred HhhhhhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhcCch--hHHhHHHHHHhccCCCChhHHHHHHHHHhccccccC
Q 000143 1493 LSQCLPKIVPKLTEVLT-DTHPKVQSAGQTALQQVGSVIKNP--EIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTV 1569 (2058)
Q Consensus 1493 l~~~L~~Iip~L~~~L~-D~~~~VR~aA~~aL~~l~~~~~~~--~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~ 1569 (2058)
+.. ...+|.|+++|. ..+..+++.|+.+|-.++..-.+. ..+.-+|.|...+..|. ....
T Consensus 90 I~~--~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~---------------sG~~ 152 (233)
T 3tt9_A 90 VAE--LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPF---------------SGWP 152 (233)
T ss_dssp HHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHH---------------HCCC
T ss_pred HHH--cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccc---------------cCCc
Confidence 222 368899999997 468999999999999987643221 11223344433322110 0000
Q ss_pred ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh---HhhhhHHHHHhhC------CCCHHHHHHHH
Q 000143 1570 DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY---IGLLLPEVKKVLV------DPIPEVRSVAA 1640 (2058)
Q Consensus 1570 ~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py---l~~ll~~L~~~l~------d~~~~vR~~a~ 1640 (2058)
+... .+..+..+.+++..|..++.+++.. ++ +.+.- .+.+++.|..+++ +.+...++.+.
T Consensus 153 ~~~~--------~~~~~~~~~~v~~na~~~L~nLss~--~~-~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v 221 (233)
T 3tt9_A 153 EGDY--------PKANGLLDFDIFYNVTGCLRNMSSA--GA-DGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCV 221 (233)
T ss_dssp GGGC--------CCCCTTCCHHHHHHHHHHHHHHTTS--CH-HHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred cccc--------ccccccchHHHHHHHHHHHHHHhcC--CH-HHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHH
Confidence 0000 0000113567888888888888752 21 11111 1235555555543 23445677777
Q ss_pred HHHHHHH
Q 000143 1641 RAIGSLI 1647 (2058)
Q Consensus 1641 ~aLg~l~ 1647 (2058)
.+|..+.
T Consensus 222 ~~L~nLs 228 (233)
T 3tt9_A 222 CILHNLS 228 (233)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 7776664
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.067 Score=60.74 Aligned_cols=153 Identities=16% Similarity=0.098 Sum_probs=98.8
Q ss_pred hHHHHHHHhccCCCh--HHHHHHHHHHHHHHhhChhhHhh-hhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchh
Q 000143 1458 LVLPSLLKGLEDKAW--RTKQSSVQLLGAMAYCAPQQLSQ-CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPE 1534 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~--~~R~~a~~~Lg~la~~~p~~l~~-~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~ 1534 (2058)
..+|.+.+.|.+++. ..+..|+..+..++...++.-.. .-...+|.|+.+|..+++.+|..|+++|..++.. +++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~--~~~ 85 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE--DND 85 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--CHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHH
Confidence 357889999998877 88888889999999876542111 1136789999999999999999999999999752 111
Q ss_pred HHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHHhhhCCCCch
Q 000143 1535 IASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMCSLVTEPKDM 1613 (2058)
Q Consensus 1535 i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~~~l~~~~~l 1613 (2058)
.+.++.. .--+|.|.+.+. ..+.++++.|+.++.+++.. .+ .-
T Consensus 86 ------------------nk~~I~~---------------~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~--~k 129 (233)
T 3tt9_A 86 ------------------NKLEVAE---------------LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DK--LK 129 (233)
T ss_dssp ------------------HHHHHHH---------------TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GG--GH
T ss_pred ------------------HHHHHHH---------------cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hh--hH
Confidence 1111111 113455556665 35677888888778777652 11 11
Q ss_pred hhhHhhhhHHHHHhhC----------------CCCHHHHHHHHHHHHHHHH
Q 000143 1614 IPYIGLLLPEVKKVLV----------------DPIPEVRSVAARAIGSLIR 1648 (2058)
Q Consensus 1614 ~pyl~~ll~~L~~~l~----------------d~~~~vR~~a~~aLg~l~~ 1648 (2058)
......-+|.|...+. ..+.+++..|..+|..++.
T Consensus 130 ~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss 180 (233)
T 3tt9_A 130 NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhc
Confidence 1122233444444321 1256888888888888864
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.013 Score=65.22 Aligned_cols=140 Identities=16% Similarity=0.091 Sum_probs=108.9
Q ss_pred HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHH
Q 000143 1617 IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696 (2058)
Q Consensus 1617 l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~ 1696 (2058)
.+.+++....+.+++..+||..|+..||.+ . ..+++++.+...+..|..+.+|..++.++++++...+++ .
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~-----~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~ 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S-----KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---K 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T-----TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---T
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c-----CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---H
Confidence 345677777888899899999999988877 2 236788877766777999999999999999998766665 4
Q ss_pred hhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 000143 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2058)
Q Consensus 1697 llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~ 1767 (2058)
.++.+..-..+++..||..+....--.+. ...+....+.++|.+-....|++..||.+...+++.+.+.
T Consensus 140 ~l~~~~~W~~d~n~~VRR~Ase~~rpW~~--~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 140 ALPIIDEWLKSSNLHTRRAATEGLRIWTN--RPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp THHHHHHHHHCSSHHHHHHHHHHTCSGGG--STTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhhHHHhc--cchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 56667777889999999998876533222 1234445667889999999999999999999999887543
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.012 Score=79.00 Aligned_cols=91 Identities=19% Similarity=0.270 Sum_probs=69.6
Q ss_pred hchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhhH
Q 000143 1922 PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001 (2058)
Q Consensus 1922 ~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~~ 2001 (2058)
.+++|.+.. +++++++.|.++|.++++++.......+..+.+.+.+.+..++.|++.+||.+|+.+|+.++...|+...
T Consensus 34 ~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 467887765 8889999999999999999864333333223233445667789999999999999999999988887544
Q ss_pred H-----HHHHHHHHhcC
Q 000143 2002 D-----EIVPTLLHALE 2013 (2058)
Q Consensus 2002 ~-----~ilp~Ll~~L~ 2013 (2058)
+ .++|+|+..|+
T Consensus 113 ~~l~~~~il~~L~~~l~ 129 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAK 129 (684)
T ss_dssp HHHHHTTHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHH
Confidence 4 48888888774
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=94.73 E-value=2.8 Score=51.41 Aligned_cols=121 Identities=15% Similarity=0.174 Sum_probs=85.2
Q ss_pred hHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCH
Q 000143 1672 NVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENE 1751 (2058)
Q Consensus 1672 ~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~ 1751 (2058)
...+.-+++-+..+...+.. .-++-+..++..+.|.+..+|..++..+-.+|.. .++.++...|.++|..+++
T Consensus 42 ~k~K~LaaQ~I~kffk~FP~-l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~ 114 (507)
T 3u0r_A 42 TKEKRLAAQFIPKFFKHFPE-LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDS 114 (507)
T ss_dssp HHHHHHHHHHHHHHGGGCGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHHHHhhChh-hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccch
Confidence 33555666666665554432 3356667778888888999999888877777654 3688899999999998888
Q ss_pred HHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHH
Q 000143 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803 (2058)
Q Consensus 1752 ~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll 1803 (2058)
.-+..+-+++..++..-....+..++..+..+ +..+|..++..+..=+
T Consensus 115 ~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~----~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 115 AEFNLVNNALLSIFKMDAKGTLGGLFSQILQG----EDIVRERAIKFLSTKL 162 (507)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHccc----chHHHHHHHHHHHHHH
Confidence 77888888888887665554444455555553 5688888777776654
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=94.38 E-value=13 Score=45.60 Aligned_cols=144 Identities=13% Similarity=0.054 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCC
Q 000143 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~ 1471 (2058)
+...++-|...+.... +.|...-.+.+..+++.+.|++..||..|...+-.++.. +.+.++...|.+.|..++
T Consensus 41 ~~k~K~LaaQ~I~kff----k~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFF----KHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPRVADILTQLLQTDD 113 (507)
T ss_dssp CHHHHHHHHHHHHHHG----GGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHH----hhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhhHHHHHHHHHhccc
Confidence 4555554444333222 245666778899999999999999999999988888765 557888888899999888
Q ss_pred hHHHHHHHHHHHHHHhhChhh-HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc----hhH-HhHHHHHHhc
Q 000143 1472 WRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEI-ASLVPTLLMG 1545 (2058)
Q Consensus 1472 ~~~R~~a~~~Lg~la~~~p~~-l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i-~~lvp~Ll~~ 1545 (2058)
.......-.+|-.+....|+. +...+..| .. .+..||..++.-|..-...+.. ++. .-++..+.+.
T Consensus 114 ~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i----~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~ 185 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDAKGTLGGLFSQI----LQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKV 185 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHH----HH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcChHHHHHHHHHHH----cc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHH
Confidence 888888888888888877764 22222222 22 3578998766555443333322 233 2344455555
Q ss_pred cCCCC
Q 000143 1546 LTDPN 1550 (2058)
Q Consensus 1546 l~d~~ 1550 (2058)
+.|-+
T Consensus 186 L~DVT 190 (507)
T 3u0r_A 186 LEDVT 190 (507)
T ss_dssp TTSCC
T ss_pred hcccc
Confidence 65543
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.34 E-value=14 Score=42.25 Aligned_cols=141 Identities=13% Similarity=0.136 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHH
Q 000143 1435 AVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPK 1514 (2058)
Q Consensus 1435 ~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~ 1514 (2058)
..+-........++-+-.+.-.+++++.+++...+.+..+|+-.+..+...+...+ ...+.+++.|..+++|.++.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~----~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV----ELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCHH
Confidence 45555666666655444555668889999887778888999999998888875443 45667888888899999999
Q ss_pred HHHHHHHHHHHHHhhcCchhHHhHHHHHHhcc-CCCC--hhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHH
Q 000143 1515 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPN--DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591 (2058)
Q Consensus 1515 VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l-~d~~--~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~ 1591 (2058)
|.+.++.+...+.. .+++.+ .+++ +....+.+.+. .+-..+...+...+..
T Consensus 106 V~K~~I~~~~~iY~------------~~l~~i~~~~~~~~~~~~~W~~m~--------------~lK~~Il~~~~s~n~g 159 (257)
T 3gs3_A 106 VIKRVIQACGSIYK------------NGLQYLCSLMEPGDSAEQAWNILS--------------LIKAQILDMIDNENDG 159 (257)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHTTSSSCCHHHHHHHHHHH--------------HHHHHHHHGGGSSCHH
T ss_pred HHHHHHHHHHHHHH------------HHHHHHhcCCCCcchHHHHHHHHH--------------HHHHHHHHHHccCCcc
Confidence 99999988877643 223322 2222 11222333222 1223344455667788
Q ss_pred HHHHHHHHHHHHHh
Q 000143 1592 TKKKAAQIVGNMCS 1605 (2058)
Q Consensus 1592 vr~~A~~~l~~L~~ 1605 (2058)
+|..+.+.+..+.-
T Consensus 160 vkl~~iKF~e~vIl 173 (257)
T 3gs3_A 160 IRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 99888888887654
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=92.68 E-value=2.2 Score=59.75 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhh-------hhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHH
Q 000143 1432 QVVAVREAAECAARAMMSQLS-------AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2058)
Q Consensus 1432 ~~~~VR~aA~~al~~l~~~l~-------~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L 1504 (2058)
.++.+|.++.-+++.++...- .+.++.+...+.+.+...+...+..++.+||++.. +..++.+
T Consensus 407 ~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~l~~l 476 (1056)
T 1lsh_A 407 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 476 (1056)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC----------hhHHHHH
Confidence 456788888878877775432 22345566666667777777788889999999864 2445555
Q ss_pred HHHhc-------CCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCC--ChhHH-HHHHHHHhccccccCChhhH
Q 000143 1505 TEVLT-------DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDP--NDHTK-YSLDILLQTTFVNTVDAPSL 1574 (2058)
Q Consensus 1505 ~~~L~-------D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~--~~~vr-~al~~L~~~~f~~~~~~~~l 1574 (2058)
.+++. +...+||.+|++||..++.. .| ..+-+.+++...|. +..+| .|+..+..+ .|..
T Consensus 477 ~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~--~p--~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t-------~P~~ 545 (1056)
T 1lsh_A 477 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR--DP--RKVQEIVLPIFLNVAIKSELRIRSCIVFFES-------KPSV 545 (1056)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT--CH--HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT-------CCCH
T ss_pred HHhhcCccccccccchHHHHHHHHHHHHhhhh--ch--HHHHHHHHHHhcCCCCChHHHHHHHHHHHHH-------CcCH
Confidence 55543 22468999999999999753 22 22334455555444 34567 566655431 2444
Q ss_pred hhHHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000143 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2058)
Q Consensus 1575 ~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~ 1605 (2058)
..+..+....-.|++..|+......+.++++
T Consensus 546 ~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 546 ALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 4444444445567888888887777777776
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=92.60 E-value=2.2 Score=46.40 Aligned_cols=106 Identities=16% Similarity=0.194 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCC---CHHHHHHHHHHHHHHHHhhcccC---ccchHHHHHh
Q 000143 1591 ETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP---IPEVRSVAARAIGSLIRGMGEEN---FPDLVSWLLD 1664 (2058)
Q Consensus 1591 ~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~---~~~vR~~a~~aLg~l~~~lg~~~---~~~llp~L~~ 1664 (2058)
..-....+.+..+.. +..-.+.||+..++|.+..++... ...+|+.|++.++.++...|..| .+.++..+.+
T Consensus 61 ~~L~~lm~~~~ALl~--N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k 138 (196)
T 4atg_A 61 EVLKTCIALYFSLIK--NKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKG 138 (196)
T ss_dssp HHHHHHHHHHHHHHH--CTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHH
Confidence 333334444555544 344578999999999999886431 22799999999999999998763 2344444444
Q ss_pred hccc-CCChHHHhhHHHHHHHHHHHhchhHHHHhh-HHHH
Q 000143 1665 ALKS-DNSNVERSGAAQGLSEVLAALGTVYFEHIL-PDII 1702 (2058)
Q Consensus 1665 ~L~~-d~~~~~R~~aa~~L~~i~~~~g~~~l~~ll-p~Ll 1702 (2058)
.+.+ .......-||..+|.. +|.+.++.++ |.+-
T Consensus 139 ~l~dp~~~l~t~YGAi~GL~~----lG~~~vr~~llP~l~ 174 (196)
T 4atg_A 139 VWMDPNRSEDSQYGALYCLSI----LSKNVVNTVIREHAE 174 (196)
T ss_dssp HHTCTTSCHHHHHHHHHHHHH----HCHHHHHTHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHH----hHHHHHHHhhhcCHH
Confidence 4432 2445566677777764 4555444433 5543
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=91.64 E-value=22 Score=40.55 Aligned_cols=178 Identities=15% Similarity=0.154 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHh-hChhhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcchhhchHHHHhhhcCCCChh
Q 000143 1860 VRQAALHVWKTIVA-NTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSAS 1938 (2058)
Q Consensus 1860 VR~aA~~~l~~lv~-~~~~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L~~~l~d~~~~ 1938 (2058)
.+-..+.-...++- ..|..+.++++.+++ ...+++.++|...++-+++.++. .....+.+++.|...++|+++.
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~----~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~~l~~L~~Ll~d~d~~ 105 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLS----LAHDSNMEVRKQVVAFVEQVCKV-KVELLPHVINVVSMLLRDNSAQ 105 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHG----GGGCSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHH----hccCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHH
Confidence 33334444445432 345444455555444 45788999999999999999865 4567889999999999998888
Q ss_pred HHHHHHHHHHHHH-------HhhCh-----hhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh--------
Q 000143 1939 RRQGVCIGLSEVM-------ASAGK-----SQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM-------- 1998 (2058)
Q Consensus 1939 vR~~a~~aL~eii-------~~~~~-----~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~-------- 1998 (2058)
+-..++.+.+.+. ...+. +..=..+..+-..+.......+..||-.|..-+..+......
T Consensus 106 V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~~~~~ 185 (257)
T 3gs3_A 106 VIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADEDSLKR 185 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcccCCC
Confidence 7665555544332 12221 111122344455566666778999999999888887632210
Q ss_pred ------------------hhH----HHHHHHHHHhcCCCcch----HHHHHHHHHHHhhcCCccchhhhhh
Q 000143 1999 ------------------QAI----DEIVPTLLHALEDDQTS----DTALDGLKQILSVRTTAVLPHILPK 2043 (2058)
Q Consensus 1999 ------------------~~~----~~ilp~Ll~~L~~~~~~----~~al~aL~~i~~~~~~~~lp~lip~ 2043 (2058)
..+ ..++..|+..+.++... ..++.+|..|++.+| ...+.+++.
T Consensus 186 ~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP-~~~~rIl~a 255 (257)
T 3gs3_A 186 DGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRP-IFMGAVVEA 255 (257)
T ss_dssp TTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred CCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCc-HHHHHHHHh
Confidence 011 24556666665554322 356777788888774 344445544
|
| >4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} | Back alignment and structure |
|---|
Probab=91.51 E-value=5.9 Score=43.08 Aligned_cols=142 Identities=16% Similarity=0.174 Sum_probs=96.0
Q ss_pred chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHH
Q 000143 1334 EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGL-----ADRNSAKRREGALLAFECLCE 1408 (2058)
Q Consensus 1334 ~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l-----~~~~~~~~R~~al~al~~L~~ 1408 (2058)
+...++..+.+.+.. ..|..|...| -...|... ++|++.+.+ .+-+|...=...+.....+..
T Consensus 8 Elq~yf~~It~a~~~----~~r~~aL~sL---~~D~gL~~-----LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~ 75 (196)
T 4atg_A 8 ELQLYFDKILSMIKS----DMKDIAIECL---EKESGLQQ-----LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIK 75 (196)
T ss_dssp HHHHHHHHHHHHHTS----TTHHHHHHHH---HHCSSCTT-----THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----HHHHHHHHHH---hcCCChhh-----hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHc
Confidence 345566666666655 2355554444 44555443 455555433 233355555555666666766
Q ss_pred HhcccchhhHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHhhhh--hhH-HhHHHHHHHhccCC--ChHHHHHHHH
Q 000143 1409 KLGRLFEPYVIQMLPLLLVAFSD---QVVAVREAAECAARAMMSQLSA--QGV-KLVLPSLLKGLEDK--AWRTKQSSVQ 1480 (2058)
Q Consensus 1409 ~lg~~~~p~l~~llp~Ll~~l~D---~~~~VR~aA~~al~~l~~~l~~--~~v-~~llp~Ll~~L~~~--~~~~R~~a~~ 1480 (2058)
...-.++||+-+++|.++.++-. ....+|+-|...+..++..++. ..+ .++...+.+.+.|+ ...+..+|+.
T Consensus 76 N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~ 155 (196)
T 4atg_A 76 NKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALY 155 (196)
T ss_dssp CTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 66667899999999999988632 1228999999999999999876 334 67788888887654 6788999998
Q ss_pred HHHHHHh
Q 000143 1481 LLGAMAY 1487 (2058)
Q Consensus 1481 ~Lg~la~ 1487 (2058)
.|..+..
T Consensus 156 GL~~lG~ 162 (196)
T 4atg_A 156 CLSILSK 162 (196)
T ss_dssp HHHHHCH
T ss_pred HHHHhHH
Confidence 8887754
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=90.27 E-value=22 Score=47.60 Aligned_cols=272 Identities=10% Similarity=0.067 Sum_probs=139.9
Q ss_pred hhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC---chhHHhHHHHHHhccCC--CChhHH--HHHHHHHhcc--
Q 000143 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK---NPEIASLVPTLLMGLTD--PNDHTK--YSLDILLQTT-- 1564 (2058)
Q Consensus 1494 ~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~---~~~i~~lvp~Ll~~l~d--~~~~vr--~al~~L~~~~-- 1564 (2058)
......+.|.+...+...+..+...+..+++.++..-+ +-.++.++..+...++. -.+.-| .++.++....
T Consensus 334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~ 413 (799)
T 1vsy_4 334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRF 413 (799)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHH
Confidence 34455677777778888899999999999999998655 33446676666667665 333333 5666655411
Q ss_pred ccc-cCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCC---------------------------------
Q 000143 1565 FVN-TVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEP--------------------------------- 1610 (2058)
Q Consensus 1565 f~~-~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~--------------------------------- 1610 (2058)
.+. ..-..++..++..+..++.-.++.--..+.+.+..++..+.-.
T Consensus 414 lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (799)
T 1vsy_4 414 IVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSK 493 (799)
T ss_dssp HTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSS
T ss_pred HhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccc
Confidence 111 1112334444445555555555555555666776665532100
Q ss_pred -----------------CchhhhHhhhhHHHHHhhC-CCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCCh
Q 000143 1611 -----------------KDMIPYIGLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSN 1672 (2058)
Q Consensus 1611 -----------------~~l~pyl~~ll~~L~~~l~-d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~ 1672 (2058)
..+..++..++..+..++. +.+..+-.....++..+...+.++.++.++..+.+...+....
T Consensus 494 ~~~~d~~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~ 573 (799)
T 1vsy_4 494 TFRVDDELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSF 573 (799)
T ss_dssp SCCCCTTHHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSCSCC
T ss_pred cccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhh
Confidence 0122333344445555554 2333343445556666666666666666666666655432211
Q ss_pred HHHhhHHHH----HHHHHHHhchhHHHHhhHHHHHhhcc----C------------ChhHHHHHHHHHHHhHHHhchhHH
Q 000143 1673 VERSGAAQG----LSEVLAALGTVYFEHILPDIIRNCSH----Q------------RASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1673 ~~R~~aa~~----L~~i~~~~g~~~l~~llp~Ll~~l~~----~------------~~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
........- ++.++..-+. .+..++|.+...+.. . ...--...+.++..+....|..+.
T Consensus 574 ~a~~~v~~L~~~~~~a~~~~~P~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g~~lL 652 (799)
T 1vsy_4 574 KEKDPNYELVTIPLAALVRRNNG-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCHESLL 652 (799)
T ss_dssp CSSSCCTHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTGGGGG
T ss_pred hHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCcHHHH
Confidence 111111111 2333333333 566666665543321 1 111112234455555555666666
Q ss_pred HhHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Q 000143 1733 NYLQQVLPAILDGLA-DENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1733 pyl~~ilp~Ll~~L~-d~~~~VR~~a~~al~~lv~ 1766 (2058)
+|-+.++..+...+. ..+..+-..+..-+..++.
T Consensus 653 ~y~deL~~il~~~~~~~k~~~~~~~~~~ll~~lL~ 687 (799)
T 1vsy_4 653 EYSDELITFMKYLYDNVTNPPLDVITSIVIHSALA 687 (799)
T ss_dssp TTHHHHHHHHHHHHHSCCCHHHHHHHTTHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHH
Confidence 777777776665553 2333333334444444443
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=88.66 E-value=26 Score=48.88 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhcc-
Q 000143 1337 TLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR---NSAKRREGALLAFECLCEKLGR- 1412 (2058)
Q Consensus 1337 ~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~---~~~~~R~~al~al~~L~~~lg~- 1412 (2058)
..+..+.+.+.+++ ... ..|++.+....... .+..+.+..+...+.++ +++..|+.++.+++.+....-.
T Consensus 356 ~a~~~i~~~i~~~~-l~~-~ea~~~l~~~~~~~----~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~ 429 (1056)
T 1lsh_A 356 EALLFLKRTLASEQ-LTS-AEATQIVASTLSNQ----QATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN 429 (1056)
T ss_dssp HHHHHHHHHHHTTC-SCH-HHHHHHHHHHHHTC----CCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC-CCH-HHHHHHHHHhhccC----CCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc
Confidence 44455555554443 221 22556665444322 11225666666666432 3678999999999999875321
Q ss_pred --c-chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhcc-------CCChHHHHHHHHHH
Q 000143 1413 --L-FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLE-------DKAWRTKQSSVQLL 1482 (2058)
Q Consensus 1413 --~-~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~-------~~~~~~R~~a~~~L 1482 (2058)
. -..++..+...+...+...+..-+..++.+|+.+.. +..++.+.+.+. +...++|.+|+.+|
T Consensus 430 ~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~AL 502 (1056)
T 1lsh_A 430 TVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMAL 502 (1056)
T ss_dssp CSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-------hhHHHHHHHhhcCccccccccchHHHHHHHHHH
Confidence 1 123455556666666666666677777888776642 234555555553 22457889999999
Q ss_pred HHHHhhChhhHhhhhhhHHHHHHHHh--cCCCHHHHHHHHHHHH
Q 000143 1483 GAMAYCAPQQLSQCLPKIVPKLTEVL--TDTHPKVQSAGQTALQ 1524 (2058)
Q Consensus 1483 g~la~~~p~~l~~~L~~Iip~L~~~L--~D~~~~VR~aA~~aL~ 1524 (2058)
..++...|+...+ .+.+.. .+.+++||.+|+..|-
T Consensus 503 r~~~~~~p~~v~~-------il~~i~~n~~e~~EvRiaA~~~Lm 539 (1056)
T 1lsh_A 503 RNIAKRDPRKVQE-------IVLPIFLNVAIKSELRIRSCIVFF 539 (1056)
T ss_dssp TTGGGTCHHHHHH-------HHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHhhhhchHHHHH-------HHHHHhcCCCCChHHHHHHHHHHH
Confidence 9988665554433 344555 3457999999998774
|
| >1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 | Back alignment and structure |
|---|
Probab=80.83 E-value=44 Score=44.71 Aligned_cols=200 Identities=11% Similarity=0.103 Sum_probs=120.5
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhCcc--
Q 000143 1845 VLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLAS---SSSERRQVAGRALGELVRKLGER-- 1919 (2058)
Q Consensus 1845 vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~~l~~~L~~---~~~~~R~~A~~~Lg~L~~~lg~~-- 1919 (2058)
+++.+..+....+..+...+..+++.++.-.|....-++|.+++.+...|.. .+.....++.+++..+++.+-..
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~ 419 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKL 419 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTT
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcc
Confidence 3444555666777888888899999998766655567899999999988887 44455567789999998876532
Q ss_pred ---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhCh----------------------------------------
Q 000143 1920 ---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGK---------------------------------------- 1956 (2058)
Q Consensus 1920 ---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~---------------------------------------- 1956 (2058)
++..++..+..+++-.|+..-..+...+..++...+-
T Consensus 420 yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~ 499 (799)
T 1vsy_4 420 YRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDD 499 (799)
T ss_dssp GGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCT
T ss_pred cHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccH
Confidence 2344555555666666666555566666555442211
Q ss_pred -----------hhhHhHHhhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhcCCCc--chHHHH
Q 000143 1957 -----------SQLLSFMDELIPTIRTALC-DSILEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQ--TSDTAL 2022 (2058)
Q Consensus 1957 -----------~~l~~~~~~ll~~L~~~L~-D~d~~VR~~Aa~a~~~l~~~~g~~~~~~ilp~Ll~~L~~~~--~~~~al 2022 (2058)
..+.+++..++.-+...+. +.+..+-..-..++..+...+.++-++.++..+.+-..+.. ....++
T Consensus 500 ~~~~~~~~~sT~~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~~if~~~l~k~~~fv~~n~~~~a~~~v 579 (799)
T 1vsy_4 500 ELLNNAFKASTTVFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDDKIFNYFASLLNRNFWSNDSFKEKDPN 579 (799)
T ss_dssp THHHHHHHHHTSTHHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHSCSCCCSSSCC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 1133444555555555553 34444445555566666666666655666666555443211 111122
Q ss_pred HH-----HHHHHhhcCCccchhhhhhhc
Q 000143 2023 DG-----LKQILSVRTTAVLPHILPKLV 2045 (2058)
Q Consensus 2023 ~a-----L~~i~~~~~~~~lp~lip~L~ 2045 (2058)
.. +..+++.+|. .++.++|.|.
T Consensus 580 ~~L~~~~~~a~~~~~P~-~~~~~~p~l~ 606 (799)
T 1vsy_4 580 YELVTIPLAALVRRNNG-LSKELVRTLL 606 (799)
T ss_dssp THHHHHHHHHHHHHCGG-GHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHH-HHHHHHHHHH
Confidence 12 3444555667 7888888776
|
| >2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17 | Back alignment and structure |
|---|
Probab=80.20 E-value=17 Score=40.57 Aligned_cols=141 Identities=7% Similarity=0.011 Sum_probs=90.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHH
Q 000143 1341 RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQ 1420 (2058)
Q Consensus 1341 ~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~ 1420 (2058)
.++..|..++-.+.|..|+..+....+... ...++.+...+.+..+|.+.+....+++.+... +-..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~-------~~~~ 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFS------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVAL-------HLTE 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCC------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHH-------SGGG
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-------ChHH
Confidence 445556665667777777766654332211 144555666666666898877654334333322 2223
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1421 MLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1421 llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
+.+.+.....|++..+|+.|..++ +........+.+++.+...+.|+++-+|++...+|..++...|+....++
T Consensus 125 ~~~~i~~W~~s~~~w~rR~ai~~~---l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 125 LPTIFALFYGAENFWNRRVALNLQ---LMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHTT---TTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH---HHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 556677889999999999987644 22222233456666666688899999999999999999888777655544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2058 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-46 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 6e-43 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-28 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-24 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-20 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-19 | |
| d1qgra_ | 876 | a.118.1.1 (A:) Importin beta {Human (Homo sapiens) | 1e-30 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-26 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-20 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 7e-13 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 6e-12 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 4e-09 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 2e-07 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 1e-24 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 2e-23 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 3e-23 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 3e-19 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 1e-18 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 1e-16 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 3e-07 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-17 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 2e-13 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 1e-04 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 4e-10 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 3e-09 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 8e-08 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 1e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 6e-08 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 2e-07 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 1e-06 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.002 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 3e-05 | |
| d1oyza_ | 276 | a.118.1.16 (A:) Hypothetical protein YibA {Escheri | 1e-04 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 9e-05 | |
| d1wa5c_ | 959 | a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc | 9e-04 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 182 bits (461), Expect = 1e-46
Identities = 119/813 (14%), Positives = 276/813 (33%), Gaps = 68/813 (8%)
Query: 1263 LNKKASDEEKYDLVREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVS 1321
L +K + +K D L K K DD VV +L +L + VQ
Sbjct: 8 LLEKMTSSDK-DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAV 66
Query: 1322 SCLSPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK---- 1376
CL PL+ + + + T+V L M SDK R ++ GL V+ +S
Sbjct: 67 KCLGPLVSKVKEYQVETIVDTLC-TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 125
Query: 1377 ---YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQV 1433
I L +A + + AL + + G L + +L LL +
Sbjct: 126 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPR 185
Query: 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGL-EDKAWRTKQSSVQLLGAMAYCAPQQ 1492
+AVR+ A ++ ++ LL L ++ + T ++ +Q + A++ A +
Sbjct: 186 LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 245
Query: 1493 LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTD- 1548
+ + L KI+P + + +++ A + P +++++ L LT
Sbjct: 246 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYD 305
Query: 1549 PNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVT 1608
PN + + D + + + S + ++ AA+ + + + T
Sbjct: 306 PNYNYDDEDEDENAMDADGGDDDDQGS---DDEYSDDDDMSWKVRRAAAKCLDAV--VST 360
Query: 1609 EPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKS 1668
+ + + + P + + V++ A SL++ ++ ++
Sbjct: 361 RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET 420
Query: 1669 DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG 1728
+ ++ +I+ + + + R + L L
Sbjct: 421 PLTMLQS-----------------QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP 463
Query: 1729 VQFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATTSLPLLLP----AVED 1782
++ ++P I+ L D + +++ AL +V++ +++ + V
Sbjct: 464 GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA 523
Query: 1783 GIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR 1842
+ + ++I ++ + L+ + + + + T
Sbjct: 524 CVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK------------ 571
Query: 1843 NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERR 1902
+ +D+ V++ A+ I+ N L +P + + L + +
Sbjct: 572 -------RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT 624
Query: 1903 QVA--GRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLL 1960
V G ++ VL +PIL+ L+ + + G L ++ + S
Sbjct: 625 TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTA 684
Query: 1961 SFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGM---QAIDEIVPTLLHALEDDQT 2017
+ +D ++ + + +S + V + A +TL K + I+ L+ +
Sbjct: 685 AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLL 744
Query: 2018 SDTALDGLKQILSVRTTAVLPHILPKLVHLPLS 2050
AL + ++ + L+
Sbjct: 745 QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 777
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 170 bits (430), Expect = 6e-43
Identities = 87/616 (14%), Positives = 201/616 (32%), Gaps = 40/616 (6%)
Query: 1460 LPSLLKGLEDKAWRTKQSSVQ-LLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSA 1518
+ +LL+ + + + L+ + + + K+V + ++L D + +VQ+
Sbjct: 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNL 64
Query: 1519 GQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
L + S +K ++ ++V TL + + + I L+T A S + L
Sbjct: 65 AVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 1579 PIVHRGL---------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLV 1629
V + + ++ + +A I+ +M S + ++ + +L + L
Sbjct: 125 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLS--RQGGLLVNFHPSILTCLLPQLT 182
Query: 1630 DPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAAL 1689
P VR A+G L+ G F DL+ LL L ++S Q ++ +
Sbjct: 183 SPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 242
Query: 1690 GTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL 1746
G Y E I+P +++ C+ +R+ + F+ R + ++ ++ L L
Sbjct: 243 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYL 302
Query: 1747 ADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806
+ D + + + +W++R+++ + L ++
Sbjct: 303 TYDPNYNYDDEDEDENAMDADGG-DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR 361
Query: 1807 AGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALH 1866
+ E + + +V A +
Sbjct: 362 HEMLPEFYKTVSPALISRFKERE---------ENVKADVFHAYLSLLKQTRPVQSWLCDP 412
Query: 1867 VWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLP---S 1923
L+ +P ++ L + S + RQ L ELV L +
Sbjct: 413 DAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 472
Query: 1924 IIPILSRGLKD--PSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEV 1981
++P + L D S++ + L ++ + + L+P + + D ++
Sbjct: 473 LVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKI 532
Query: 1982 RESAGLAFSTLFKSAG----------MQAIDEIVPTLLHALEDDQTSDTALDGLKQILSV 2031
A L L K I ++ + L+ + +
Sbjct: 533 TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 592
Query: 2032 RTTAVLPHILPKLVHL 2047
+ ++ L +
Sbjct: 593 IICNLGDNLGSDLPNT 608
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 122 bits (307), Expect = 2e-28
Identities = 127/928 (13%), Positives = 276/928 (29%), Gaps = 68/928 (7%)
Query: 1140 SHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIAL 1199
+ +V+L A + +A L + ++ + + + R+ +
Sbjct: 141 KQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT------SPRLAVRKRTII 194
Query: 1200 ALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIF 1259
AL ++ L+S + + + I + G L I
Sbjct: 195 ALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKII 254
Query: 1260 ENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQR 1318
+ D+++ RE + + + K+ P V +++ L L
Sbjct: 255 PLVVKFCNVDDDEL---REYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD 311
Query: 1319 AVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYG 1378
+ + D+ R A A V +
Sbjct: 312 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT 371
Query: 1379 IAATLREGLADRNSAKRREGALLAFECLCEKLGR-------------------LFEPYVI 1419
++ L +R + + A+ L ++ + + V
Sbjct: 372 VSPALISRFKEREENVKAD-VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVP 430
Query: 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV---LPSLLKGLEDKAWRTKQ 1476
++ L ++ V R+ +++ L + + +P ++ L DK+ +
Sbjct: 431 NIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNL 490
Query: 1477 SSVQLLGAMAY---CAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN- 1532
L +PQ + +VP + + D K+ S QQ+ VI+
Sbjct: 491 KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL 550
Query: 1533 ---------PEIASLVPTLLMGLTDPNDHTKYSLD-ILLQTTFVNTVDAPSLALLVPIVH 1582
P I L + L + + I + + + L +
Sbjct: 551 DQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQ 610
Query: 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARA 1642
L E + + + D+ P +G +P + L ++ A
Sbjct: 611 IFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSA 670
Query: 1643 IGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV--LAALGTVYFEHILPD 1700
+ LI+ + ++ +LD L S + + +S + LA + I
Sbjct: 671 LDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGS 730
Query: 1701 IIRNCSHQRAS------VRDGYLTLFKYLPRSL--GVQFQNYLQQVLPAILD-GLADENE 1751
I+ S L F+ L + + + + L+ + + A ++
Sbjct: 731 ILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHK 790
Query: 1752 SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF-NDNWRIRQSSVELLGDLLFKVAGTS 1810
+ L ++ ++D IR ++ LG++ + +
Sbjct: 791 QSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG 850
Query: 1811 GKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRS--DVSLSVRQAALHVW 1868
L + + +E A LG + L V + LH
Sbjct: 851 QLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSL 910
Query: 1869 KTIV-ANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPSIIPI 1927
K I+ + + LK + + L+ + R V LG KL +++P
Sbjct: 911 KEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG----KLTLIDPETLLPR 966
Query: 1928 LSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGL 1987
L L S+ R V + ++ + + + I L D L VR A +
Sbjct: 967 LKGYLISGSSYARSSVVTAVKFTISDHPQP-IDPLLKNCIGDFLKTLEDPDLNVRRVALV 1025
Query: 1988 AFSTLFKSAGMQAIDEIVPTLLHALEDD 2015
F++ + I +++ T+L L ++
Sbjct: 1026 TFNSAAHNKP-SLIRDLLDTVLPHLYNE 1052
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (273), Expect = 2e-24
Identities = 127/948 (13%), Positives = 281/948 (29%), Gaps = 91/948 (9%)
Query: 1063 LHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIE--VSTSLWIAVHDPEKSVAEAAED- 1119
+ D +R C+ A + + + ++ ++ L +DP + + ED
Sbjct: 258 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE 317
Query: 1120 --IWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYI 1177
+ G D + ++ VR AAA+ L + + + T+ I
Sbjct: 318 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALI 377
Query: 1178 RDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRML 1237
+NV A L + L ++ +
Sbjct: 378 SRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH 437
Query: 1238 NAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPK 1297
+ +K + + E + + ++ + L
Sbjct: 438 K---QMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVP-------GIIFSLNDKSSS 487
Query: 1298 VHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRG 1357
+ +D L + + + L+ + + ++ ++
Sbjct: 488 SNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVV---ACVGDPFYKITSEALLVTQQLV 544
Query: 1358 AAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY 1417
F + K T++ A + +E A+ + LG
Sbjct: 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604
Query: 1418 VIQMLPLLLVAFSD---QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRT 1474
+ L + L + ++ V+ A + L + +P L L
Sbjct: 605 LPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLR-PVLGEGVPILASFLRKNQRAL 663
Query: 1475 KQSSVQLLGAMAYCAP----QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530
K ++ L + + + +P L ++ + T L +V
Sbjct: 664 KLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSS 723
Query: 1531 KNPEIASLVPTLLMGLTDP--NDHTKYSLDILLQTTFVNTVDAPSLALLVP-IVHRGLRE 1587
+ S++ L+ + P ++ Q V + L+ + +
Sbjct: 724 LSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQ 783
Query: 1588 RSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGS 1645
+A T K++ + + +T PK+ +G + +VK +R +A ++G
Sbjct: 784 STALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD--SIRLLALLSLGE 841
Query: 1646 LIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNC 1705
+ + +L S +L+A S + V +S A+ L + LP +++
Sbjct: 842 VGHHIDLSGQLELKSVILEAFSSPSEEV-KSAASYALGS----ISVGNLPEYLPFVLQEI 896
Query: 1706 SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLV 1765
+ Q +L + + + V + Y++ + +L E R+ L
Sbjct: 897 TSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLT 956
Query: 1766 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAS 1825
T LP L + G + R S V + + D
Sbjct: 957 LIDPETLLPRLKGYLISG----SSYARSSVVTAVKFTI----------------SDHPQP 996
Query: 1826 TEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV 1885
+ + I L L D L+VR+ AL + + N P +++++
Sbjct: 997 IDPLLKNCIGDF--------LKTL----EDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT 1044
Query: 1886 LMNTLISSLASSSSERRQVA------GRALGELVRK-------------LGERVLPSIIP 1926
++ L + R+V G +RK L + +
Sbjct: 1045 VLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLN 1104
Query: 1927 ILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTAL 1974
+ GLKD + + L +++ S +L +D L+ +R
Sbjct: 1105 HVEDGLKDHYDIKMLT-FLMLVR-LSTLCPSAVLQRLDRLVEPLRATC 1150
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.3 bits (238), Expect = 3e-20
Identities = 127/1006 (12%), Positives = 274/1006 (27%), Gaps = 89/1006 (8%)
Query: 811 SANREVSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSLMLSAL 870
R++S G K + A G + + S K + V L L +
Sbjct: 97 EQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA-LDIM 155
Query: 871 GEMAIANPVFAHSQLPSLVKFVDPLLQSP--IVGDVAYEALVKLSRCTAMPLCNWALDIA 928
+M + PS++ + P L SP V AL L +
Sbjct: 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV------ 209
Query: 929 TALRLIVTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF-TFVF 987
DLI + +S+ + + + + + +
Sbjct: 210 ---------------DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKII 254
Query: 988 PIIERILLSPKRTGLHD--DVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGS 1045
P++ + + + + +I++ L P+Y
Sbjct: 255 PLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDED 314
Query: 1046 ALNELCLGLQPNEVASALHGVYTKDVH----VRMACLNAVKCIPAVSTRSLPENIE-VST 1100
++ Y+ D VR A + + + LPE + VS
Sbjct: 315 EDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSP 374
Query: 1101 SLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDE 1160
+L + E++V + S L + + E T L
Sbjct: 375 ALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDA-------MEQGETPLTMLQS 427
Query: 1161 YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFL 1220
+I +L + RQ L +VL I +
Sbjct: 428 QVPNIVKALHKQMK-------------EKSVKTRQCCFNMLTELVNVLPGALTQHIPVLV 474
Query: 1221 --ISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVR- 1277
I +L D ++ ++ + + + A + + +
Sbjct: 475 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITS 534
Query: 1278 -------EGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEA--VQRAVSSCLSPLM 1328
+ V + P + + + L V+ SC+ ++
Sbjct: 535 EALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQII 594
Query: 1329 QSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388
++ D + + L ++ K R ++ G + + + + +
Sbjct: 595 CNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILAS 654
Query: 1389 DRNSAKR--REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARA 1446
+R + G L A + L + +I + L + +
Sbjct: 655 FLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLT 714
Query: 1447 MMSQLSAQGVKLVLPSLL---------KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497
++++ + + S+L L+ A Q L +
Sbjct: 715 TLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR 774
Query: 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSL 1557
P ++ TH + + + + A + + + + L
Sbjct: 775 MLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLL 834
Query: 1558 DILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617
+L + +D L ++ S E K A+ +G++ +
Sbjct: 835 ALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISV---------GNL 885
Query: 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSG 1677
LP V + + P+ + + ++ +I V + L + G
Sbjct: 886 PEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLL-KHCECAEEG 943
Query: 1678 AAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737
++E L L + E +LP + + R +T K+ L+
Sbjct: 944 TRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN 1003
Query: 1738 VLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLL---LPAV 1780
+ L L D + +VR AL + + + LL LP +
Sbjct: 1004 CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.5 bits (228), Expect = 4e-19
Identities = 162/1207 (13%), Positives = 327/1207 (27%), Gaps = 110/1207 (9%)
Query: 354 NALQELSNATEGKYLNSLSLTICKFLLSCYKDEGNEEVKLAILSAVASWAKRSADIIQSD 413
N L K + + K +L +D+ N EV+ + + + +
Sbjct: 25 NDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-NGEVQNLAVKCLGPLVSKVKEYQVET 83
Query: 414 LLSFFASGLKE-KEALRRGHLRCLRVICTNTDAVLQVSSLLGPLIQLVKTGFTKAVQRLD 472
++ + + KE LR L+ + S+L + + + T A+ + +
Sbjct: 84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE 143
Query: 473 GIYAFLIVGKIAAADIKAEETVTKEKLWSLVSQNEPSLVPTAMISKLSVDDCM--ACVEL 530
+ ++ A DI A+ + L+ PS++ + S + +
Sbjct: 144 DVSV-----QLEALDIMADML---SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIA 195
Query: 531 LVVLLVEHSHRVLETFSVKLLLQLVLLFTCHPSWDIRKMAHDATRKIITSVPHLSEALLL 590
L L++ + V L+ L+ + + S + I H L
Sbjct: 196 LGHLVMSCGNIVFV----DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLE 251
Query: 591 EFSNF-LSLVGEKIIISKTSDTDDFVDSQVPFLPSVEVQVKTLLVIASVALARGPSASAR 649
+ + + F V V T++ I L P+ +
Sbjct: 252 KIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD 311
Query: 650 VIFCSHHPSIVGTGKRDAVWQRLHKCLRAVGFNVIEIVSADVGNLCKVLLGSLGLMSANL 709
DA ++ + +S V L ++ +
Sbjct: 312 DEDED-------ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM 364
Query: 710 LEQ--QAAINSLSTLMSITPKDTYVAFEKHLKDLPDCYVHDSLSENDIQVFYTPEGMLSS 767
L + + +L + ++ L D E L+
Sbjct: 365 LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTM 424
Query: 768 EQGV------YIAEIVAAKNTKQSKGRFRMYEE------QDGVDHVGSNHSAKRESANRE 815
Q + + + K+ K + F M E H+ S N +
Sbjct: 425 LQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDK 484
Query: 816 VSGAGKKDIGKSTKKADKGKTAKEEARELLLNEEASIREKVQGVQRNLSL-MLSALGEMA 874
S + K S + + + + V ++ L ++
Sbjct: 485 SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV 544
Query: 875 IANPVFAHSQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLI 934
++ L I A + ++ + ++ L
Sbjct: 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD 604
Query: 935 VTEEVHVDSDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSFTFVFPIIERIL 994
+ + + + L I TV + + P++
Sbjct: 605 LPNTLQIFLE---------------RLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEG- 648
Query: 995 LSPKRTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGL 1054
+L + L L L + +L S AA+ A+ + L
Sbjct: 649 ---------VPILASFLRKNQRALKLGTLSALDILIKNYS--DSLTAAMIDAVLDELPPL 697
Query: 1055 QPNEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVA 1114
+ + +++ I L + S L
Sbjct: 698 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVR-SPLLQGGALSAMLDFF 756
Query: 1115 EAAEDIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFS 1174
+A S S + ++A + + +
Sbjct: 757 QALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVG 816
Query: 1175 LYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRG 1234
+I+D+ N + R L+L + + + ++ A + + +V+
Sbjct: 817 QFIQDV----KNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVIL-EAFSSPSEEVKS 871
Query: 1235 RMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 1294
A I + + + + + + +Y L+ I + A L
Sbjct: 872 AASYALGSISVGNLPEYLPFVLQEITS------QPKRQYLLLHSLKEIISSASVVGL--- 922
Query: 1295 DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGE 1354
P V + LL E + V+ CL L + L + S
Sbjct: 923 KPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPR----LKGYLISGSSYA 978
Query: 1355 RRGAAFGLAGVVKGFG--ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR 1412
R + + I L K I L+ L D + RR AL+ F
Sbjct: 979 RSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKT-LEDPDLNVRR-VALVTFNSAAHNKPS 1036
Query: 1413 LFEPYVIQMLPLLL------------VAFS------DQVVAVREAA-ECAARAMMSQLSA 1453
L + +LP L V D + +R+AA EC + S L
Sbjct: 1037 LIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDR 1096
Query: 1454 QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHP 1513
+ L + GL+D + K + +L ++ P + Q L ++V L T T
Sbjct: 1097 LDIFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLCPSAVLQRLDRLVEPLRATCT-TKV 1154
Query: 1514 KVQSAGQ 1520
K S Q
Sbjct: 1155 KANSVKQ 1161
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 129 bits (325), Expect = 1e-30
Identities = 125/904 (13%), Positives = 272/904 (30%), Gaps = 107/904 (11%)
Query: 1108 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSN--YNVRLAAAEALATALDEYPDS 1164
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 12 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71
Query: 1165 IQGSLSTLFSL-------YIRDI---GLGGDNVDAGWLGRQGIALALHSAADV-LRTKDL 1213
I+ + +++ LG + + + A +
Sbjct: 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYR-----PSSASQCVAGIACAEIPVNQW 126
Query: 1214 PVIMTFLISRALA-DTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEK 1272
P ++ L++ ++ ++ L A I + + + + EE
Sbjct: 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186
Query: 1273 YDLVREGVVIFTGALAKHL---AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329
+ V+ + + + H ++ + + P V+ A L +M
Sbjct: 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMS 246
Query: 1330 SMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLA 1388
+ L +++ K A G+ + + ++ +A E
Sbjct: 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGI----EFWSNVCDEEMDLAIEASEAAE 302
Query: 1389 DRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVV----AVREAAECAA 1444
E + + Y++ +L L + +AA
Sbjct: 303 Q----------GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352
Query: 1445 RAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPKIVPK 1503
+ + V VLP + + +++ WR + ++V G + P QL + + +P
Sbjct: 353 MLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPT 412
Query: 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-----ASLVPTLLMGLTDPNDHTKYSLD 1558
L E++ D V+ + ++ ++ I A L+ L+ GL+
Sbjct: 413 LIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCW 472
Query: 1559 ILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG 1618
A L +K + +
Sbjct: 473 AFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR--PDGHQNNLRSSAYE 530
Query: 1619 LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGA 1678
L+ VK D P V+ + L + + S + N +S
Sbjct: 531 SLMEIVKNSAKDCYPAVQKTTLVIMERL------QQVLQMESHIQSTSDRIQFNDLQSLL 584
Query: 1679 AQGLSEVLAALGTVYFEHILPDIIRNC------SHQRASVRDGYLTLFKYLPRSLGVQFQ 1732
L VL + I ++ + + V++ L L LG +F
Sbjct: 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFL 644
Query: 1733 NYLQQVLPAILDGLADENES-VRDAALG-------AGHVLVEHYATTSLPLLLPAVEDGI 1784
Y++ P + GL + E V AA+G A + + + LLL + +
Sbjct: 645 KYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN-- 702
Query: 1785 FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNE 1844
N + ++ + + GD+ + G + + ++ L + + +
Sbjct: 703 ENVHRSVKPQILSVFGDIALAI----------------GGEFKKYLEVVLNTLQQASQAQ 746
Query: 1845 VLAALYMVRSDVSLSVRQAALHVWKTIV-------ANTPKTLKEIMPVLMN-----TLIS 1892
V + Y D +R++ L + IV N + + P + I+
Sbjct: 747 VDKSDY-DMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIA 805
Query: 1893 SLASSSSERRQVAGRALGELVRKLGERVL------PSIIPILSRGLKDPSASRRQGVCIG 1946
+ A +G+L G+ VL P I +L+ G + + +
Sbjct: 806 GDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWA 865
Query: 1947 LSEV 1950
E+
Sbjct: 866 TKEL 869
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 114 bits (285), Expect = 2e-26
Identities = 92/593 (15%), Positives = 198/593 (33%), Gaps = 43/593 (7%)
Query: 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 1519
+ L+ L ++ + + +S++ L +A + + +++P LT+ + D V A
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVE--RTRSELLPFLTDTIYDEDE-VLLAL 68
Query: 1520 QTALQQVGSVIKNPEIA-SLVPTLLMGLTDPNDHTK----YSLDILLQTTFVNTVDAPSL 1574
L +++ PE L+P L T + SL + + ++A
Sbjct: 69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA--- 125
Query: 1575 ALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPE 1634
VP+V R ++ A + P+ L + + D P
Sbjct: 126 -HFVPLVKRLAGGDWFTSRTSACGLFSVCY-----PRVSSAVKAELRQYFRNLCSDDTPM 179
Query: 1635 VRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY 1693
VR AA +G + + +N +++ + + +V ++
Sbjct: 180 VRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDL 239
Query: 1694 FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESV 1753
++P + + + S R Y+ K+ V + ++PA + + D V
Sbjct: 240 EALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEV 297
Query: 1754 RDAALGAGHVLVEHYATTS-----LPLLLPAVEDGIFNDNWRIRQSSVELLG-------- 1800
R AA E+ + + +LP +++ + + N ++ + ++
Sbjct: 298 RAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK 357
Query: 1801 -DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLS 1859
+ + + L + + + R +L A+ + D
Sbjct: 358 DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWR 417
Query: 1860 VRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG-E 1918
VR A + + + L + ++ L R+ A L +LV K G E
Sbjct: 418 VRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE 475
Query: 1919 RVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSI 1978
+IIP + DP+ R ++ + G+ ++PT+ D +
Sbjct: 476 WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI---TTKHMLPTVLRMAGDPV 532
Query: 1979 LEVRESAGLAFSTLFKSAGMQAIDEIVPTLLHALEDDQTSD---TALDGLKQI 2028
VR + + + + V +L L DQ D A + L +
Sbjct: 533 ANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.0 bits (237), Expect = 2e-20
Identities = 102/619 (16%), Positives = 201/619 (32%), Gaps = 53/619 (8%)
Query: 1381 ATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAA 1440
A L + L + + R ++ + LG E ++LP L D+ + A
Sbjct: 13 AVLIDELRNEDVQLRLN-SIKKLSTIALALG--VERTRSELLPFLTDTIYDEDEVLLALA 69
Query: 1441 ECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMA-YCAPQQLSQCLPK 1499
E + V +LP L + + +V+ L A++ +P L
Sbjct: 70 EQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV- 128
Query: 1500 IVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDI 1559
P + + +++ + + A L +D + +
Sbjct: 129 --PLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAAS 186
Query: 1560 LLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGL 1619
L + ++P+ + + A + N+ L+ + L
Sbjct: 187 KLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED----LEAL 242
Query: 1620 LLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAA 1679
++P +++ D VR + A L + +G E + L D R+ A+
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAAS 302
Query: 1680 QGLSEVLAALGTVYFEHILPDIIRNCSHQRA---SVRDGYLTLFKYLPRSLGVQFQNYLQ 1736
+ E L E+++ I C + + + S + N ++
Sbjct: 303 HKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIE 362
Query: 1737 QVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSS 1795
+LP L L DE VR + + E LLPA+ + + WR+R +
Sbjct: 363 HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAI 422
Query: 1796 VELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RS 1854
+E + L LG + +E L +L M
Sbjct: 423 IEYMPLL-------------------------------AGQLGVEFFDEKLNSLCMAWLV 451
Query: 1855 DVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVR 1914
D ++R+AA K +V K + ++ +++ + R + L
Sbjct: 452 DHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509
Query: 1915 KLGERVL-PSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTA 1973
G+ + ++P + R DP A+ R V L ++ S L E+ P +
Sbjct: 510 VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVKPILEKL 566
Query: 1974 LCDSILEVRESAGLAFSTL 1992
D ++V+ A A + L
Sbjct: 567 TQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.4 bits (173), Expect = 7e-13
Identities = 78/488 (15%), Positives = 158/488 (32%), Gaps = 27/488 (5%)
Query: 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVR 1636
L+P + + + E A+ +G +LV P+ Y+ LLP ++ + VR
Sbjct: 50 LLPFLTDTIYDED-EVLLALAEQLGTFTTLVGGPE----YVHCLLPPLESLATVEETVVR 104
Query: 1637 SVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEH 1696
A ++ ++ + L+ L + R+ A S + +
Sbjct: 105 DKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE 164
Query: 1697 ILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756
+ CS VR + + L + +++P + +DE +SVR
Sbjct: 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK--SEIIPMFSNLASDEQDSVRLL 222
Query: 1757 ALGAGHVLVEHY-ATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKAL- 1814
A+ A + + L++P + + +WR+R + +L V K
Sbjct: 223 AVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDL 282
Query: 1815 -------LEGGSDDEGASTEAHGRAIIEVLGRDKRNEV----LAALYMVRSDVSLSVRQA 1863
++ + A+ + E L D R V + + ++
Sbjct: 283 VPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKS 342
Query: 1864 ALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERVLPS 1923
AL ++ I +L L R + ++ S
Sbjct: 343 ALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS 402
Query: 1924 IIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRE 1983
++P + +D R + + + G F ++L L D + +RE
Sbjct: 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIRE 459
Query: 1984 SAGLAFSTLFKSAGMQ-AIDEIVPTLLHALEDDQTSD--TALDGLKQILSV-RTTAVLPH 2039
+A L + G + A I+P +L D T L + + V H
Sbjct: 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKH 519
Query: 2040 ILPKLVHL 2047
+LP ++ +
Sbjct: 520 MLPTVLRM 527
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.1 bits (167), Expect = 3e-12
Identities = 86/550 (15%), Positives = 170/550 (30%), Gaps = 38/550 (6%)
Query: 1146 VRLAAAEALATALD-----EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200
V LA AE L T EY + L +L ++ + R +
Sbjct: 64 VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV-------------RDKAVES 110
Query: 1201 LHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFE 1260
L + + DL L+ R R + + + L F
Sbjct: 111 LRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 1261 NYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAV 1320
N + VR G AK L + D ++ ++ + ++V+
Sbjct: 171 NLCSDDTPM------VRRAAASKLGEFAKVL-ELDNVKSEIIPMFSNLASDEQDSVRLLA 223
Query: 1321 SSCLSPLMQSM-QDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGI 1379
+ Q + Q++ LV L Q + + R A + K G K +
Sbjct: 224 VEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLV 283
Query: 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
A A+ R A + CE L V ++ +L + V +
Sbjct: 284 PAFQNL--MKDCEAEVRAAASHKVKEFCENLSADCRENV--IMSQILPCIKELVSDANQH 339
Query: 1440 AECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY---CAPQQLSQC 1496
+ A +++ LS K L L + + V+L + Q
Sbjct: 340 VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQL 399
Query: 1497 LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGL-TDPNDHTKY 1555
++P + E+ D +V+ A + + + + +L M D +
Sbjct: 400 SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIRE 459
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
+ L+ + A ++P V + + + ++++E
Sbjct: 460 AATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFC----INVLSEVCGQDI 515
Query: 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVER 1675
+LP V ++ DP+ VR A+++ + + V +L+ L D +
Sbjct: 516 TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVK 575
Query: 1676 SGAAQGLSEV 1685
A + L+ +
Sbjct: 576 YFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.3 bits (165), Expect = 6e-12
Identities = 93/591 (15%), Positives = 193/591 (32%), Gaps = 40/591 (6%)
Query: 1069 KDVHVRMACLNAVKCIPAVSTRSLPENI--EVSTSLWIAVHDPEKSVAEAAEDIWDRYGY 1126
+DV +R LN++K + ++ E E+ L ++D ++ + AE +
Sbjct: 22 EDVQLR---LNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL 78
Query: 1127 DFGTDYSG-----LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIG 1181
G +Y L + VR A E+L E+ S + L R
Sbjct: 79 VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEH--SPSDLEAHFVPLVKRLA- 135
Query: 1182 LGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGI 1241
W + A L S + + + +D VR +
Sbjct: 136 ------GGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 1242 MIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAV 1301
DNV + ASDE+ + + L + V
Sbjct: 190 EFAKVLELDNVK---SEIIPMFSNLASDEQDSVRLLA---VEACVNIAQLLPQEDLEALV 243
Query: 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAF 1360
+ L S V+ V+ + L +++ E T + LMK + R A+
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASH 303
Query: 1361 GLAGVVKGFGISSLKKYGIAATL--REGLADRNSAKRREGALLAFECLCEKLGR--LFEP 1416
+ + + ++ L + L + + L LG+ E
Sbjct: 304 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 363
Query: 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQ 1476
+ L L + + + +C + + Q + +LP++++ ED WR +
Sbjct: 364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRL 420
Query: 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI-KNPEI 1535
+ ++ + +A + K+ L D ++ A + L+++ K
Sbjct: 421 AIIEYMPLLAGQLGVEFFDE--KLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAH 478
Query: 1536 ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKK 1595
A+++P +L DPN + + + + ++P V R + A +
Sbjct: 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFN 538
Query: 1596 AAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646
A+ + + ++ + P ++K+ D +V+ A A+ L
Sbjct: 539 VAKSLQKIGPILDNS----TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.0 bits (141), Expect = 4e-09
Identities = 74/540 (13%), Positives = 149/540 (27%), Gaps = 31/540 (5%)
Query: 1004 DDVLQMLYKHMDPLLPL-----PRLRMISVLYHVLGV-VPSYQAAIGSALNELCLGLQPN 1057
D+VL L + + L ++ L + V + +L + P+
Sbjct: 62 DEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 1058 EVASALHGVYTK--DVHVRMACLNAVKCIPAVSTRSLPENI-EVSTSLWIAVHDPEKSVA 1114
++ + + + + +A R E+ D V
Sbjct: 122 DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVR 181
Query: 1115 EAAEDIWDRYGYDFGTDY------SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGS 1168
AA + D S +VRL A EA P
Sbjct: 182 RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---D 238
Query: 1169 LSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADT 1228
L L +R + + L ++ +T +P +
Sbjct: 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVR 298
Query: 1229 NADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALA 1288
A + D +S + P + ++ + + L+
Sbjct: 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA------LASVIMGLS 352
Query: 1289 KHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMK 1348
L KD+ H + L + + E +S+ + + + +L +
Sbjct: 353 PILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAE 412
Query: 1349 SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCE 1408
K+ R + + G+ + +L + RE A + L E
Sbjct: 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLN--SLCMAWLVDHVYAIREAATSNLKKLVE 470
Query: 1409 KLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-QGVKLVLPSLLKGL 1467
K G+ E ++P +L D R + K +LP++L+
Sbjct: 471 KFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMA 528
Query: 1468 EDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527
D + + + L + Q ++ P L ++ D V+ Q AL +
Sbjct: 529 GDPVANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 2e-07
Identities = 28/160 (17%), Positives = 62/160 (38%), Gaps = 5/160 (3%)
Query: 1657 DLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY-FEHILPDIIRNCSHQRASVRDG 1715
++ L+D L++++ + R + + LS + ALG +LP + + +
Sbjct: 10 YPIAVLIDELRNEDVQL-RLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLAL 68
Query: 1716 YLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPL 1775
L + G Y+ +LP + E VRD A+ + + ++ + L
Sbjct: 69 AEQLGTFTTLVGG---PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALL 1815
+ + +W ++S L + + ++ KA L
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 109 bits (273), Expect = 1e-24
Identities = 101/815 (12%), Positives = 238/815 (29%), Gaps = 67/815 (8%)
Query: 1292 AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLM----QSMQDEAPTLVSRLLDQLM 1347
P + + +L L + E + L + Q+ + + +
Sbjct: 38 LNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNI 97
Query: 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLC 1407
R + + + + + L L EGA A + +C
Sbjct: 98 GDSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDS-EDYNTCEGAFGALQKIC 154
Query: 1408 EKLGRLFEPYVIQ-----MLPLLLVAFSDQVVAVREAAECAARAM---MSQLSAQGVKLV 1459
E + + V+ M+P L F +R A +Q +
Sbjct: 155 EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSF 214
Query: 1460 LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAG 1519
+L D+ +++ + L + +L + IV + + D V
Sbjct: 215 TENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEA 274
Query: 1520 QTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLV 1578
+ ++ +P L+ L + ++ + +L + S +
Sbjct: 275 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334
Query: 1579 PIVHR-------------------------GLRERSAETKKKAAQIVGNMCSLVTEPKDM 1613
P HR +K +A + + ++ ++
Sbjct: 335 PRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY--RDEL 392
Query: 1614 IPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNV 1673
+P+I LL E+ + E + AI P+L+ L+ L + V
Sbjct: 393 LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALV 452
Query: 1674 ERSGAAQGLSEVLAALG----TVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729
RS LS + Y + ++ ++++ V++ + F L
Sbjct: 453 -RSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 511
Query: 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW 1789
+ YL +L ++ + A L + + W
Sbjct: 512 ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 571
Query: 1790 RIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAAL 1849
+ + + L LL ++ S + R + V + + A
Sbjct: 572 NMLKDEDKDLFPLLECLS----SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ 627
Query: 1850 YMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPV--LMNTLISSLASSSSERRQVAGR 1907
AL + + +++++ ++ + + E RQ +
Sbjct: 628 PDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFA 687
Query: 1908 ALGELVRKLGERV---LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMD 1964
LG+L + + V + +PIL L S + E ++ ++ ++
Sbjct: 688 LLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGE-ISIQMGIEMQPYIP 746
Query: 1965 ELIPTIRTAL--CDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHAL---EDDQ 2016
++ + + ++ + E+ + L + + + +L D++
Sbjct: 747 MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNE 806
Query: 2017 TSDTALDGLKQILSVRTTAVLPHILPKLVHLPLSY 2051
D+A G+ ++SV + V+ S+
Sbjct: 807 EKDSAFRGICTMISVNPSGVIQD-FIFFCDAVASW 840
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (263), Expect = 2e-23
Identities = 109/780 (13%), Positives = 246/780 (31%), Gaps = 78/780 (10%)
Query: 1093 PENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGY--DFGTDYSGLFKALSHSNYNVRLAA 1150
+ ++ L P+ ++ + ++ DF + L + R +
Sbjct: 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLS 66
Query: 1151 AEALATALDEYPDSI-QGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLR 1209
L + + + G + S + +IG + R + + + + A
Sbjct: 67 GLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLI------RATVGILITTIASKGE 120
Query: 1210 TKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR--------DNVSLLFPIFEN 1261
++ P ++ L S L + + A I + ++++ P F
Sbjct: 121 LQNWPDLLPKLCS-LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ 179
Query: 1262 YLNKKASD-------------EEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLL-D 1307
+ + + + + FT L ++P+V V + L
Sbjct: 180 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVM 239
Query: 1308 VLNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQL-MKSDKYGERRGAAFGLAGVV 1366
+L + + + + + ++Q QD+ + + +++ + L ++
Sbjct: 240 LLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLI 299
Query: 1367 KGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL 1426
L+ + + + E + + + + I+
Sbjct: 300 PVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDD 359
Query: 1427 VAF----SDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLL 1482
+ +R+ + A + + + + +LP L + L W K+S + +L
Sbjct: 360 DEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVL 419
Query: 1483 GAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASL 1538
GA+A Q + LP+++P L + L+D V+S L + + + + L
Sbjct: 420 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 479
Query: 1539 VPTLLMGLTDPNDHTKYSLDILLQT--TFVNTVDAPSLALLVPIVHRGLRERSAETKKKA 1596
+ LL + D N + + T T P LA ++ + + +
Sbjct: 480 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLIL 539
Query: 1597 AQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL---------VDPIPEVRSVAARAIGSLI 1647
+G + V + YI +L+P + + + P+ E S A A+ S
Sbjct: 540 YDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF 599
Query: 1648 RGMGEENFPDLVSWLLDALKSDNSNVERSG------------AAQGLSEVLAALGT---- 1691
E + V+ + L N + A LS + LG
Sbjct: 600 LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ 659
Query: 1692 -VYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADEN 1750
V +IL + + + VR L L ++ + + +P + L E
Sbjct: 660 LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
Query: 1751 ESVRDAALGAGHVLVEH-------YATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLL 1803
SV + A A + Y L L+ + + +++ +G L
Sbjct: 720 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKT--LLENTAITIGRLG 777
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (262), Expect = 3e-23
Identities = 85/586 (14%), Positives = 188/586 (32%), Gaps = 46/586 (7%)
Query: 1498 PKIVPKLTEVLTDTH---PKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK 1554
+ + ++ ++L ++ +Q Q L+Q+ + P+ + + +L L ++ T+
Sbjct: 7 EQGLQQILQLLKESQSPDTTIQRTVQQKLEQLN---QYPDFNNYLIFVLTKLKSEDEPTR 63
Query: 1555 YSLDILLQTTFV---NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611
++L+ + + + S + ++ + S K
Sbjct: 64 SLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIAS-----K 118
Query: 1612 DMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD--------LVSWLL 1663
+ LLP++ +L A A+ + E D ++ L
Sbjct: 119 GELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL 178
Query: 1664 DALKSDNSNVERSGAAQGLSEVLAALGTVYFEH---ILPDIIRNCSHQRASVRDGYLTLF 1720
K + + RS A +++ + + H ++ + VR
Sbjct: 179 QFFKHSSPKI-RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRAL 237
Query: 1721 KYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH-----YATTSLPL 1775
L + ++ ++ +L D++E+V A L E LP
Sbjct: 238 VMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPK 297
Query: 1776 LLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835
L+P + +G+ + I ++ D + + E +
Sbjct: 298 LIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDD 357
Query: 1836 VLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLA 1895
++ ++R+ + + L + L+ L+
Sbjct: 358 DDDEIDDDDT---------ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 408
Query: 1896 SSSSERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAG 1955
E + A+ E + LP +IP L + L D A R C LS
Sbjct: 409 WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 468
Query: 1956 KSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG---MQAIDEIVPTLLHAL 2012
+++ L+ + + DS V+E+A AF+TL + A + + I+ TL+ A
Sbjct: 469 SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 528
Query: 2013 EDDQTSD--TALDGLKQI-LSVRTTAVLPHILPKLVHLPLSYVSLY 2055
Q + D + + SV P + L+ + ++
Sbjct: 529 SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNML 574
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.4 bits (228), Expect = 3e-19
Identities = 82/734 (11%), Positives = 200/734 (27%), Gaps = 59/734 (8%)
Query: 1068 TKDVHVRMACLNAVKCIPAVSTRSLPENI--EVSTSLWIAVHDPEKSVAEAAEDIWDRYG 1125
++D R +K ++ P + + + + D + +
Sbjct: 57 SEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIA 116
Query: 1126 YDFGTDY-----SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDI 1180
L L +YN A AL ++ + + + +
Sbjct: 117 SKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPK 176
Query: 1181 GLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIMTFLISR--ALADTNADVRGRMLN 1238
L + R ++ + I +F + D +VR +
Sbjct: 177 FLQFFK-HSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCR 235
Query: 1239 AGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKV 1298
A +M+++ + + I E L + +E L + +
Sbjct: 236 ALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL 295
Query: 1299 HAVVDKLLDVL-----------------NTPSEAVQRAVSSCLSPLMQSMQDEAPTLVSR 1341
++ L++ + T ++ Q + Q + +
Sbjct: 296 PKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEE 355
Query: 1342 LLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKK--YGIAATLREGLADRNSAKRREGA 1399
D D + + + L + L + +E
Sbjct: 356 DDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESG 415
Query: 1400 LLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459
+L + E + PY+ +++P L+ SD+ VR + +Q
Sbjct: 416 ILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY 475
Query: 1460 ----LPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKV 1515
+ LLK + D R ++++ + A +L L I+ L + K
Sbjct: 476 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKN 535
Query: 1516 QSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLA 1575
A+ + + + +LM + + P L
Sbjct: 536 LLILYDAIGTLADSVGHHLNKPEYIQMLM---------PPLIQKWNMLKDEDKDLFPLLE 586
Query: 1576 LLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEV 1635
L + + + V + + + P +
Sbjct: 587 CLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN--------AQPDQYEAPDKDF 638
Query: 1636 RSVAARAIGSLIRGMGEENFP-----DLVSWLLDALKSDNSNVERS--GAAQGLSEVLAA 1688
VA + L G+G ++++ + ++ V +S L++
Sbjct: 639 MIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQ 698
Query: 1689 LGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGL-- 1746
+P + N + + SV + + +G++ Q Y+ VL +++ +
Sbjct: 699 HVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINR 758
Query: 1747 ADENESVRDAALGA 1760
+ +++ +
Sbjct: 759 PNTPKTLLENTAIT 772
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.5 bits (220), Expect = 1e-18
Identities = 60/414 (14%), Positives = 131/414 (31%), Gaps = 42/414 (10%)
Query: 1633 PEVRSVAARAIGSLIR---------------GMGEENFPDLVSWLLDALKSDNSNVERSG 1677
R A I + + + ++ +++L L ++ S
Sbjct: 50 QVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETY--RPSS 107
Query: 1678 AAQGLSEVLAALGTVYF----EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQN 1733
A+Q ++ + A V L + N + + Q Q+
Sbjct: 108 ASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 167
Query: 1734 YLQQVLPAILDGLADENES--VRDAALGAGHVLVEHYATTSLPLL-----LPAVEDGIFN 1786
++L AI+ G+ E S V+ AA A +E + V +
Sbjct: 168 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 227
Query: 1787 DNWRIRQSSVELLGD-------LLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGR 1839
+ R+R ++++ L + G + A+ + G +
Sbjct: 228 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 287
Query: 1840 DKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLISSLASSSS 1899
++ + + + + + H K + L I+ + +
Sbjct: 288 EEMDLAI------EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 341
Query: 1900 ERRQVAGRALGELVRKLGERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQL 1959
+ AG L L + ++P ++P + +K+P R + ++ SQL
Sbjct: 342 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 401
Query: 1960 LSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI-DEIVPTLLHAL 2012
+ + +PT+ + D + VR++A + + AI D + LL L
Sbjct: 402 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.9 bits (203), Expect = 1e-16
Identities = 61/461 (13%), Positives = 141/461 (30%), Gaps = 34/461 (7%)
Query: 1108 DPEKSVAEAAEDIWDRYGYDFGTDY-SGLFKALSHSN--YNVRLAAAEALATALDEYPDS 1164
P++ EAA+ +R + + L + L++ R+AA + +L
Sbjct: 11 SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 70
Query: 1165 IQGSLSTLFS-------LYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM 1217
I+ + +++ L + A + P ++
Sbjct: 71 IKAQYQQRWLAIDANARREVKNYVLQT-LGTETYRPSSASQCVAGIACAEIPVNQWPELI 129
Query: 1218 TFLISRALAD-TNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLV 1276
L++ + ++ L A I + + + + EE + V
Sbjct: 130 PQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNV 189
Query: 1277 REGVVIFTGALAKHL---AKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQS--- 1330
+ + + + H ++ + + P V+ A L +M
Sbjct: 190 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 249
Query: 1331 -MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLAD 1389
M+ + + + MKSD + V + +
Sbjct: 250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE-------------MDLAIEA 296
Query: 1390 RNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449
+A++ + + + P + Q L D +AA + +
Sbjct: 297 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 356
Query: 1450 QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAY-CAPQQLSQCLPKIVPKLTEVL 1508
V VLP + + +++ WR + ++V G + P QL + + +P L E++
Sbjct: 357 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 416
Query: 1509 TDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTD 1548
D V+ + ++ ++ I + LL L +
Sbjct: 417 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 3e-07
Identities = 57/474 (12%), Positives = 130/474 (27%), Gaps = 60/474 (12%)
Query: 1208 LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKA 1267
++LP + L R LA+ R+ AG+ +N L K
Sbjct: 27 AAVENLPTFLVELS-RVLANPGNSQVARVA-AGL----------------QIKNSLTSKD 68
Query: 1268 SDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPL 1327
D + + D V + + S C++ +
Sbjct: 69 PDIK-------------AQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGI 115
Query: 1328 MQS------MQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAA 1381
+ + P LV+ + + A + + + + A
Sbjct: 116 ACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 175
Query: 1382 TLREGLADRNSAKRREGALLAFECLCEKLG--RLFEPYVIQMLPLLLVAFSDQVVAVREA 1439
++ + S + A A E E ++ ++ A VR A
Sbjct: 176 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVA 235
Query: 1440 AECAARAMMS----QLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQ 1495
A +MS + + ++ ++ ++ + +
Sbjct: 236 ALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIE 295
Query: 1496 CLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY 1555
+ + ALQ + P + + D + +
Sbjct: 296 ASEAAEQGRPPEH-----TSKFYAKGALQYL-----VPILTQTLTKQDENDDDDDWNPCK 345
Query: 1556 SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP 1615
+ + + + ++P + ++ + A G + EP + P
Sbjct: 346 AAG-VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILE-GPEPSQLKP 403
Query: 1616 YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPD-----LVSWLLD 1664
+ +P + +++ DP VR AA +G + + E D L+ L++
Sbjct: 404 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 86.4 bits (212), Expect = 2e-17
Identities = 91/786 (11%), Positives = 214/786 (27%), Gaps = 76/786 (9%)
Query: 1265 KKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCL 1324
+ S+ + L + + F G ++ L ++ K+ + L + N
Sbjct: 22 RLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFA 81
Query: 1325 SPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLR 1384
+ + EA + + S + AA +A + + + +
Sbjct: 82 QRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIAD-IELPHGAWPELMKIMV 140
Query: 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLL-----VAFSDQVVAVREA 1439
+ + +LLA +CE + V +L+ ++ AVR A
Sbjct: 141 DNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLA 200
Query: 1440 AECAARAMMSQLSAQ-----GVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLS 1494
A A + + ++ + + + + + ++ L + +
Sbjct: 201 ALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMK 260
Query: 1495 QCLPKIVPKLT-EVLTDTHPKVQSAGQTALQQVGSVIKN--------------------P 1533
+ + + LT + + KV S + +
Sbjct: 261 PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALS 320
Query: 1534 EIASLVPTLLMGLTDPN-----DHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRER 1588
I +VP LL LT N D S+ + V
Sbjct: 321 SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITA 380
Query: 1589 SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIR 1648
++AA + + Y+ LP + ++ D +V+ A IG +
Sbjct: 381 DNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIAD 440
Query: 1649 GMGE-----ENFPDLVSWLLDALKSDNSNVERSGA-----AQGLSEVLAALGTVYFEHIL 1698
+ E ++ P +V L L+ + L+E + ++ ++
Sbjct: 441 SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALV 500
Query: 1699 PDIIRNC--SHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDA 1756
+I + R + + + ++D L +
Sbjct: 501 DGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQ 560
Query: 1757 ALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLE 1816
+ +L + I + + L+G + + +
Sbjct: 561 LT----LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIED 616
Query: 1817 GGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP 1876
A + G+ + L L + V V A+ I +
Sbjct: 617 DVFYAISALAASLGKGFEKYL-----ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671
Query: 1877 KTLKEIMPVLMNTLISSLASSSSER--RQVAGRALGELVRKLGE---RVLPSIIPILSRG 1931
+ + +MN L +++ ++ R + G++ +G L I+ +
Sbjct: 672 EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAA 731
Query: 1932 LKDPSASR-----------RQGVCIGLSEVMASAGK--SQLLSFMDELIPTIRTALCDSI 1978
+ + V ++A L ++ + I D
Sbjct: 732 QNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ 791
Query: 1979 LEVRES 1984
L ++
Sbjct: 792 LYSEDA 797
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.3 bits (178), Expect = 2e-13
Identities = 97/708 (13%), Positives = 218/708 (30%), Gaps = 77/708 (10%)
Query: 1135 LFKALSHSN-YNVRLAAAEALATALDEYP---DSIQGSLSTLFSLYIRDIGLGGDNVDAG 1190
+ NV+ A+ AL + ++ S + + ++ +
Sbjct: 139 MVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR 198
Query: 1191 WLGRQGIALALHSAADVLRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRD 1250
+A +L + + + + ++ A + +V+ I+ K+
Sbjct: 199 LAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258
Query: 1251 NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLN 1310
+ A+ + D V V F + + ++ L N
Sbjct: 259 MKPYMEQALYALTI--ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYN 316
Query: 1311 TPSEAVQRAVSSCLSPLMQSMQDEAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFG 1370
+++ V + L+ L + +D + D + A L + G
Sbjct: 317 FALSSIKDVVPNLLNLLTRQNEDP-------------EDDDWNVSMSAGACLQLFAQNCG 363
Query: 1371 ISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL-FEPYVIQMLPLLLVAF 1429
L+ E ++ + RE A++AF + + ++ YV Q LP +L
Sbjct: 364 NHILEPVL---EFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLM 420
Query: 1430 SDQVVAVREAAECAARAMMSQLS-----AQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484
+DQ + V+E + ++ Q + V+ + L GL+D S ++
Sbjct: 421 NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINL 480
Query: 1485 MAYCAPQQLSQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQVGSVIKN------- 1532
+ A S + ++ D +++ +AL + +
Sbjct: 481 VEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA 540
Query: 1533 -------PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSL-------ALLV 1578
++ + LT + + L + T + L+
Sbjct: 541 SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMG 600
Query: 1579 PIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSV 1638
++ SA + + + + + K Y+ P + K L V
Sbjct: 601 LFFRLLEKKDSAFIEDDVFYAISALAASL--GKGFEKYLETFSPYLLKALNQVDSPVSIT 658
Query: 1639 AARAIGSLIRGMGEENFP---DLVSWLLDALKSDNSNVE-RSGAAQGLSEVLAALGTVYF 1694
A I + + E+ +++ L + + N+ E + ++ + +G F
Sbjct: 659 AVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD-F 717
Query: 1695 EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVR 1754
L DI+ C + P + ++ +Y +VL A+LD +
Sbjct: 718 IPYLNDIMALC-----------VAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLH 766
Query: 1755 DAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802
D + Y T + ED +++V L+GD+
Sbjct: 767 DK-----PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDI 809
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 1e-04
Identities = 83/688 (12%), Positives = 193/688 (28%), Gaps = 64/688 (9%)
Query: 883 SQLPSLVKFVDPLLQSPIVGDVAYEALVKLSRCTAMPLCNWALDIATALRLIVTEEVHVD 942
Q +LV + +L + + G + E + L + + I + E +
Sbjct: 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNM------EREGE 221
Query: 943 SDLIPSVGEAAKNKESLCLFERIVNGLTVSCKSGPLPVDSF--TFVFPIIERIL--LSPK 998
+ + V A E + + L + + ++ + + + K
Sbjct: 222 RNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK 281
Query: 999 RTGLHDDVLQMLYKHMDPLLPLPRLRMISVLYHVLGVVPSYQAAIGSALNELCLGLQPNE 1058
+ + + + + S L + S + + + LN L + E
Sbjct: 282 VASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPE 341
Query: 1059 VASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE 1118
+ A + V + A S+ + +
Sbjct: 342 DDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401
Query: 1119 DIWDRYGYDFGTDYSGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIR 1178
+ Y ++ + V+ A + D +SI L +
Sbjct: 402 KVQRTYYVHQALPSI--LNLMNDQSLQVKETTAWCIGRIADSVAESID-PQQHLPGVVQA 458
Query: 1179 DIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLPVIM----TFLISRALADTNADVRG 1234
+ D+ I + A+ + + + D + R
Sbjct: 459 CLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARA 518
Query: 1235 RMLNAGIMIIDKHGRD---NVSLLFPIFENYLNKKASDEEKYDL------VREGVVIFTG 1285
+A +++ + + + L + S +E ++E
Sbjct: 519 SAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILT 578
Query: 1286 ALAKHLAKDDPKVHAVVDKLLDV-----LNTPSEAVQRAVSSCLSPLMQSMQDEAPTLVS 1340
LA + K V V D L+ + S ++ V +S L S+ +
Sbjct: 579 VLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE 638
Query: 1341 RLLDQLMKS--DKYGERRGAAFGLAGVVKGFGISSLKKY--GIAATLREGLADRNSAKR- 1395
L+K+ A G + ++Y + L + +++ N+ +
Sbjct: 639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARREL 698
Query: 1396 REGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQG 1455
+ L F + +G F PY+ ++ L + A + + A ++ +
Sbjct: 699 KPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVL-----EA 753
Query: 1456 VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTD-THPK 1514
V ++ GL DK P+ L + I + +V D
Sbjct: 754 VLDAYVGIVAGLHDK-------------------PEALFPYVGTIFQFIAQVAEDPQLYS 794
Query: 1515 VQSAGQTALQQVG---SVIKNPEIASLV 1539
+ + A+ +G ++ + I
Sbjct: 795 EDATSRAAVGLIGDIAAMFPDGSIKQFY 822
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 45.6 bits (106), Expect = 3e-05
Identities = 33/271 (12%), Positives = 70/271 (25%), Gaps = 34/271 (12%)
Query: 1425 LLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGA 1484
L D R ++ AR L +G + + ++ DK + + +LG
Sbjct: 24 LFRLLDDHNSLKRISS---ARV----LQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQ 76
Query: 1485 MAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLM 1544
+ + + L D V++ + Q +V +
Sbjct: 77 I-KICKKCEDNVFNILNNMA---LNDKSACVRATAIESTAQRCK-KNPIYSPKIVEQSQI 131
Query: 1545 GLTDPNDHTKYS-------------LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAE 1591
D + + + + + +L+ D + A +++ +
Sbjct: 132 TAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRD 191
Query: 1592 TKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMG 1651
+ Q + +L + L V A G L
Sbjct: 192 CFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGELGD--- 246
Query: 1652 EENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682
L+ L L + N + A L
Sbjct: 247 ----KTLLPVLDTMLYKFDDNEIITSAIDKL 273
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Score = 43.7 bits (101), Expect = 1e-04
Identities = 51/311 (16%), Positives = 88/311 (28%), Gaps = 48/311 (15%)
Query: 1491 QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPN 1550
+QC +L +L D + + + LQ G V + +D N
Sbjct: 11 GLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKN 63
Query: 1551 DHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTE 1609
+ IL Q + +L + L ++SA + A + C
Sbjct: 64 YIRRDIGAFILGQIKICKKCEDNVFNIL---NNMALNDKSACVRATAIESTAQRCKKNPI 120
Query: 1610 PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSD 1669
I + D VR A A + N + L++ LK
Sbjct: 121 YSPKIVEQ------SQITAFDKSTNVRRATAFA-------ISVINDKATIPLLINLLKDP 167
Query: 1670 NSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV 1729
N +V I + N + V + ++
Sbjct: 168 NGDVRN----------------WAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIG 211
Query: 1730 QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNW 1789
++VL + D L V D + A E T LP+L + D+
Sbjct: 212 LSYRKDKRVLSVLCDELKKNT--VYDDIIEA---AGELGDKTLLPVLDTMLYK---FDDN 263
Query: 1790 RIRQSSVELLG 1800
I S+++ L
Sbjct: 264 EIITSAIDKLK 274
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (106), Expect = 9e-05
Identities = 53/506 (10%), Positives = 147/506 (29%), Gaps = 52/506 (10%)
Query: 1232 VRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHL 1291
R + + +K+ ++ + ++++ SD K ++ + ALA +
Sbjct: 377 RRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAING 436
Query: 1292 AKDDPKVHAVVDKL-------------LDVLNTPSEAVQRAVSSCLSPLMQSMQDEAPTL 1338
+ V + + L L N P ++ + +
Sbjct: 437 NITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE 496
Query: 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVK----------GFGISSLKKY------GIAAT 1382
+ +L +++D+Y AA + ++ F + + A
Sbjct: 497 LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIAL 556
Query: 1383 LREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF---------SDQV 1433
+ + + E + + + + +P Q+L +
Sbjct: 557 ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFT 616
Query: 1434 VAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL 1493
E+ Q V ++P+ L + Q++ + +
Sbjct: 617 HYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIP 676
Query: 1494 SQCLPKIVPKLTEVLTDTHPKVQSAGQ--TALQQVGSVIKNPEIASLVPTLLMGLTDPND 1551
P P L + + + + + + + S I + L + + +
Sbjct: 677 ESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYE 736
Query: 1552 HTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPK 1611
+ L + P + + ++ + L+ E K + + S
Sbjct: 737 VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSD 796
Query: 1612 DMIPYI-----GLLLPEVKKVLVDPIPEV-----RSVAARAIGSLIRGMGE--ENFPDLV 1659
+I +I GL ++ +P + R +A + +++ +P L+
Sbjct: 797 FLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRKIALIGVLNMVINGQFFQSKYPTLI 856
Query: 1660 SWLLDALKSDNSNVERSGAAQGLSEV 1685
S ++++ S+ + ++
Sbjct: 857 SSTMNSIIETASSQSIANLKNDYVDL 882
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (97), Expect = 9e-04
Identities = 55/462 (11%), Positives = 131/462 (28%), Gaps = 63/462 (13%)
Query: 1626 KVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685
+++ ++ AI S+ + +P L+S L L +D+ G +
Sbjct: 92 PLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLSNDDMVT-NKGVLTVAHSI 150
Query: 1686 LAALGTVY---------------FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730
++ F ++++ Q + + ++
Sbjct: 151 FKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANEN---------NKASLNI 201
Query: 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWR 1790
+ L ++ D + + + G + Y + S PLL E + +
Sbjct: 202 LFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIK 261
Query: 1791 IRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALY 1850
++ S EL+ + G + V +L
Sbjct: 262 VKSSIQELVQLYTTRYEDVFGPMI-------NEFIQITWNLLTSISNQPKYDILVSKSLS 314
Query: 1851 MVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMNTLIS------------SLASSS 1898
+ + + + + T + + + + + S +
Sbjct: 315 FLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDT 374
Query: 1899 SERRQVAGRALGELVRKLGERVLPSIIP----ILSRGLKDPSASRRQGVCIGLSEVMASA 1954
RR+ L EL K V + + + + DPS + + +
Sbjct: 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAI 434
Query: 1955 GKS-------------QLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQAI 2001
+ ++ F + I T+ + +R A T +
Sbjct: 435 NGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL 494
Query: 2002 DEIVPTLLHALEDDQT--SDTALDGLKQILSVRTTAVLPHIL 2041
E++P L L+ D+ A +++IL++R + P +
Sbjct: 495 IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFI 536
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2058 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 100.0 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 100.0 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 100.0 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.98 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.97 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.97 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.96 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.95 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.95 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.71 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.69 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.63 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.47 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.41 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.36 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 99.33 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.3 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.19 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.04 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.98 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.98 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.94 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.73 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.57 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 98.24 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 98.18 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.11 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 98.06 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.68 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 97.6 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.55 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 96.35 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 92.95 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 87.57 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.4e-32 Score=395.21 Aligned_cols=890 Identities=16% Similarity=0.179 Sum_probs=622.1
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHHHHhhcCCCCCCCH-HhH
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAEDIWDRYGYDFGTDY-SGL 1135 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~~w~~~~~~~~~~~-~~l 1135 (2058)
..+..||+++.++|+++|.+|++.|....... . ...|++. .+ .+ +.+
T Consensus 3 ~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~--~-------------~~~~~~~-~~----------------~i~~~l 50 (1207)
T d1u6gc_ 3 YHISNLLEKMTSSDKDFRFMATNDLMTELQKD--S-------------IKLDDDS-ER----------------KVVKMI 50 (1207)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSS--C-------------CSCCTTH-HH----------------HHHHHH
T ss_pred hhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhc--c-------------cccChHH-HH----------------HHHHHH
Confidence 46889999999999999999999888664111 0 0112211 11 23 678
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCCCChH
Q 000143 1136 FKALSHSNYNVRLAAAEALATALDEYPD-SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRTKDLP 1214 (2058)
Q Consensus 1136 l~~l~~~~~~vR~aaa~aLa~~~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~~~~~ 1214 (2058)
++.|+|+++.||..|.++++.++...++ .+..+++.|+... . ++.+..|..+..+++.+...+.....
T Consensus 51 l~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l----~------~~~~~~r~~~~~~L~~i~~~l~~~~~- 119 (1207)
T d1u6gc_ 51 LKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNM----L------SDKEQLRDISSIGLKTVIGELPPASS- 119 (1207)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHT----T------CSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHh----c------CCchhhhHHHHHHHHHHHHhcccccc-
Confidence 8999999999999999999999877654 4455555655432 1 24567888888888876554432110
Q ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCccchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccC
Q 000143 1215 VIMTFLISRALADTNADVRGRMLNAGIMIIDKHGRDNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKD 1294 (2058)
Q Consensus 1215 ~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~ 1294 (2058)
+.. ..+ ...+.+++.+...+.. .++ ..+|..++..++.+..+++..
T Consensus 120 -----------~~~--~~~----------------~~~~~l~~~l~~~~~~---~~~--~~v~~~al~~l~~l~~~~g~~ 165 (1207)
T d1u6gc_ 120 -----------GSA--LAA----------------NVCKKITGRLTSAIAK---QED--VSVQLEALDIMADMLSRQGGL 165 (1207)
T ss_dssp ------------CC--THH----------------HHHHHHHHHHHHHHSC---CSC--HHHHHHHHHHHHHHHHHTCSS
T ss_pred -----------cch--hHH----------------HHHHHHHHHHHHhhcC---CCC--HHHHHHHHHHHHHHHHHhhHh
Confidence 000 000 0112233333333332 111 257888999999999877654
Q ss_pred -CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhcccc-hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc
Q 000143 1295 -DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQDE-APTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS 1372 (2058)
Q Consensus 1295 -~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~~-~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~ 1372 (2058)
.++...+++.++..+.++...||+.+..|++.++...++. +..+++.+++.+..+.++..|+.+.++++.++...|..
T Consensus 166 l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~ 245 (1207)
T d1u6gc_ 166 LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 245 (1207)
T ss_dssp CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchh
Confidence 4678899999999999999999999999999998876543 46678888888887777888999999999999887754
Q ss_pred ccch-hchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1373 SLKK-YGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQL 1451 (2058)
Q Consensus 1373 ~l~~-~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l 1451 (2058)
..+. ..+++.+...+.++ +...|+.++.+++.+...++..+.||+..+++.++..+.++................. .
T Consensus 246 ~~~~l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~-~ 323 (1207)
T d1u6gc_ 246 IGEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDA-D 323 (1207)
T ss_dssp GTTSCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------------------
T ss_pred hHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhh-h
Confidence 3321 37899999998877 7789999999999999999999999999999999888775333222222222222111 1
Q ss_pred hhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC
Q 000143 1452 SAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK 1531 (2058)
Q Consensus 1452 ~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~ 1531 (2058)
.........+.......+..|++|..++.+++.++...|+.+..++..++|.+...+.|.++.||..+..++..+.....
T Consensus 324 ~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~ 403 (1207)
T d1u6gc_ 324 GGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 403 (1207)
T ss_dssp ------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred ccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcc
Confidence 11122334444555567789999999999999999999998889999999999999999999999999999999886543
Q ss_pred c----------------------hhHHhHHHHHHhccCCCChhHH-HHHHHHHhc-cccccCChhhHhhHHHHHHHhhcC
Q 000143 1532 N----------------------PEIASLVPTLLMGLTDPNDHTK-YSLDILLQT-TFVNTVDAPSLALLVPIVHRGLRE 1587 (2058)
Q Consensus 1532 ~----------------------~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~-~f~~~~~~~~l~~llp~L~~~L~d 1587 (2058)
+ ..+..+++.+.+.+.+.+..+| .++..+... ...+....+.+..+++.+...+.+
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~ 483 (1207)
T d1u6gc_ 404 PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLND 483 (1207)
T ss_dssp CC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTC
T ss_pred chhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhc
Confidence 2 1124566777777888887777 344444331 122222345567778888888876
Q ss_pred C--CHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----------Cc
Q 000143 1588 R--SAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----------NF 1655 (2058)
Q Consensus 1588 ~--s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----------~~ 1655 (2058)
. +..+|..++..+..+... ..+..+.+|...+++.+...+.|+.+.++..+..+++.+...+++. ++
T Consensus 484 ~~~~~~~~~~al~~l~~l~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~ 562 (1207)
T d1u6gc_ 484 KSSSSNLKIDALSCLYVILCN-HSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI 562 (1207)
T ss_dssp SSSCHHHHHHHHHHHHHHHHS-SCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHh-ccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHH
Confidence 4 457788888888888774 4557789999999999999999999999999999999999877642 23
Q ss_pred cchHHHHHhhcc-cCCChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHh-chh
Q 000143 1656 PDLVSWLLDALK-SDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSL-GVQ 1730 (2058)
Q Consensus 1656 ~~llp~L~~~L~-~d~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~-g~~ 1730 (2058)
.++++.++..+. .+.+.++|..+..+++.++...|.. ++..+++.+...+.+. ..|..++..+..++... +..
T Consensus 563 ~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~r~~a~~~l~~i~~~~~~~~ 640 (1207)
T d1u6gc_ 563 KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKID 640 (1207)
T ss_dssp HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCC
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcch--hhHHHHHHHHHHHHHhccchh
Confidence 445666666665 3556778999999999999888765 5677777777776654 46788888888776643 456
Q ss_pred HHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccc----hhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHh
Q 000143 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS----LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKV 1806 (2058)
Q Consensus 1731 f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~----l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~ 1806 (2058)
+.+++..+++.+...+.+.+..+|..++.++..++..++... ++.+++.+...+.+.+..++..++..++.+....
T Consensus 641 ~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~ 720 (1207)
T d1u6gc_ 641 LRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVY 720 (1207)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccHHHHHHHHHHHHHHHhhc
Confidence 789999999999999999999999999999999998876542 3446667777788888999998888887764221
Q ss_pred hCCc----cc--------------------c-------cccCCC------------------CCCCcchHH----HHHHH
Q 000143 1807 AGTS----GK--------------------A-------LLEGGS------------------DDEGASTEA----HGRAI 1833 (2058)
Q Consensus 1807 ~g~~----~k--------------------~-------~~~~~~------------------e~~~~~~e~----~~~~l 1833 (2058)
.+.. .. . ...... ......... ..+.+
T Consensus 721 ~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i 800 (1207)
T d1u6gc_ 721 PSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCV 800 (1207)
T ss_dssp GGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHH
Confidence 1000 00 0 000000 000000000 00000
Q ss_pred ---H--------------------------------HHhC-------hhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 000143 1834 ---I--------------------------------EVLG-------RDKRNEVLAALYMVRSDVSLSVRQAALHVWKTI 1871 (2058)
Q Consensus 1834 ---~--------------------------------~~Lg-------~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~l 1871 (2058)
. ..+| ......+...+...+.|.+..||.+|...++.+
T Consensus 801 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l 880 (1207)
T d1u6gc_ 801 AALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSI 880 (1207)
T ss_dssp HHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 0 0011 111112333344456788899999998888766
Q ss_pred HhhCh----------------------------------hhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000143 1872 VANTP----------------------------------KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLG 1917 (2058)
Q Consensus 1872 v~~~~----------------------------------~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg 1917 (2058)
+.... ..+.++.+.+++.+...+.+++..+|..+++|+|.++...
T Consensus 881 ~~~~~~~~lp~il~~l~~~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~- 959 (1207)
T d1u6gc_ 881 SVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID- 959 (1207)
T ss_dssp HHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS-
T ss_pred HHhhHHHHhHHHHHHHhcCchHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-
Confidence 53221 1223455667777767778888999999999999998642
Q ss_pred cchhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Q 000143 1918 ERVLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAG 1997 (2058)
Q Consensus 1918 ~~~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g 1997 (2058)
...++|.+...++++++.+|.+++.+++.++...+ ..+.+|+..+++.+...+.|++++||..|..+|+.+.++.+
T Consensus 960 ---~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~-~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p 1035 (1207)
T d1u6gc_ 960 ---PETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP-QPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP 1035 (1207)
T ss_dssp ---GGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSC-CTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCG
T ss_pred ---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh
Confidence 35688999999999999999999999998887765 45678999999999999999999999999999999998765
Q ss_pred h---hhHHHHHHHHHHhcCC-C-------------------cchHHHHHHHHHHHhhcC
Q 000143 1998 M---QAIDEIVPTLLHALED-D-------------------QTSDTALDGLKQILSVRT 2033 (2058)
Q Consensus 1998 ~---~~~~~ilp~Ll~~L~~-~-------------------~~~~~al~aL~~i~~~~~ 2033 (2058)
. +++++++|.+++...- + +.|..|++++..++....
T Consensus 1036 ~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~ 1094 (1207)
T d1u6gc_ 1036 SLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCL 1094 (1207)
T ss_dssp GGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhh
Confidence 3 6788999999876431 1 147899999999996643
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-32 Score=366.21 Aligned_cols=563 Identities=19% Similarity=0.245 Sum_probs=437.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH
Q 000143 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYV 1418 (2058)
Q Consensus 1339 v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l 1418 (2058)
+..+++.|.+ +++.+|..|+..++.++..+|++... ..++|++.+.++++ ..++.++...++.+....|. ..++
T Consensus 12 i~~l~~~l~~-~~~~~R~~a~~~l~~ia~~lg~~~~~-~~lip~l~~~~~~~--~ev~~~~~~~l~~~~~~~~~--~~~~ 85 (588)
T d1b3ua_ 12 IAVLIDELRN-EDVQLRLNSIKKLSTIALALGVERTR-SELLPFLTDTIYDE--DEVLLALAEQLGTFTTLVGG--PEYV 85 (588)
T ss_dssp HHHHHHHTTC-SCHHHHHHHHHTHHHHHHHSCHHHHH-HTHHHHHHHTCCCC--HHHHHHHHHHHTTCSGGGTS--GGGG
T ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCcHhhH-HHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHHcCC--hhHH
Confidence 4445565544 57999999999999999999987653 47999999988764 34555554545444433331 3356
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccC-CChHHHHHHHHHHHHHHhhChhhHhhhh
Q 000143 1419 IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCL 1497 (2058)
Q Consensus 1419 ~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~-~~~~~R~~a~~~Lg~la~~~p~~l~~~L 1497 (2058)
..++|.+...+.++++.||++|..++..++...+++.+...+.+++..+.+ +.+..|..|+.+++.++...+....
T Consensus 86 ~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~--- 162 (588)
T d1b3ua_ 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK--- 162 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH---
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH---
Confidence 678888889999999999999999999999998888886555556555554 4456788888888888765554433
Q ss_pred hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhH-HhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhh
Q 000143 1498 PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEI-ASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLAL 1576 (2058)
Q Consensus 1498 ~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i-~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~ 1576 (2058)
..+++.+.++++|.++.||++++.+++.+++.++.+.. ..
T Consensus 163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~--------------------------------------- 203 (588)
T d1b3ua_ 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE--------------------------------------- 203 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHT---------------------------------------
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHH---------------------------------------
Confidence 46778888899999999999999999999987654332 23
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-Cc
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-NF 1655 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-~~ 1655 (2058)
++|.+...++|.++.+|..+..+++.++..+.+ ..+...++|.+...+.|++|.||..++++++.++..+|.+ ..
T Consensus 204 l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~ 279 (588)
T d1b3ua_ 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhh
Confidence 445555555666667777777777777664322 2344557888888888888999999999999888887766 33
Q ss_pred cchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh-----HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchh
Q 000143 1656 PDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV-----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQ 1730 (2058)
Q Consensus 1656 ~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~-----~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~ 1730 (2058)
.+++|.+...+. |.+..+|..++.+++.++..++.. .++.++|.+.....+.++.+|..+..++..++..+|..
T Consensus 280 ~~l~~~l~~ll~-d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~ 358 (588)
T d1b3ua_ 280 TDLVPAFQNLMK-DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD 358 (588)
T ss_dssp HTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH
T ss_pred hhhhHHHHHHHh-ccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchh
Confidence 467777776666 566778888888888888877654 35778899999999999999999999999998888864
Q ss_pred HHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccc-hhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCC
Q 000143 1731 FQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS-LPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGT 1809 (2058)
Q Consensus 1731 f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~-l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~ 1809 (2058)
.+.+.++|.+...+.|++++||..+..++..+...++... .+.++|.+.+.+.|.+|++|.++++.++.+..
T Consensus 359 --~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~----- 431 (588)
T d1b3ua_ 359 --NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG----- 431 (588)
T ss_dssp --HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-----
T ss_pred --HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-----
Confidence 4677889999999999999999999999988887766443 45689999999999999999999999988742
Q ss_pred cccccccCCCCCCCcchHHHHHHHHHHhChhhHH-HHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHHHHHH
Q 000143 1810 SGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRN-EVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLKEIMPVLMN 1888 (2058)
Q Consensus 1810 ~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~-~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~~L~~ 1888 (2058)
.+|.+.+. .+.+.+...+.|....||.+|...++.++..++.. ...+.+++
T Consensus 432 --------------------------~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~--~~~~~i~~ 483 (588)
T d1b3ua_ 432 --------------------------QLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIP 483 (588)
T ss_dssp --------------------------HHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHH
T ss_pred --------------------------HcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcH--HHHHHHHH
Confidence 23333332 33344455678999999999999999998766543 23455666
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCcch-hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHH
Q 000143 1889 TLISSLASSSSERRQVAGRALGELVRKLGERV-LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELI 1967 (2058)
Q Consensus 1889 ~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~-l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll 1967 (2058)
.+...+.++++..|..++.+++.+...++... .+.++|.+.+.++|+.+++|.+++.+++.+....+... +...+.
T Consensus 484 ~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~---~~~~i~ 560 (588)
T d1b3ua_ 484 KVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST---LQSEVK 560 (588)
T ss_dssp HHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHH---HHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHh---HHHHHH
Confidence 77777899999999999999999999887654 57899999999999999999999999999987776543 346678
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHH
Q 000143 1968 PTIRTALCDSILEVRESAGLAFSTL 1992 (2058)
Q Consensus 1968 ~~L~~~L~D~d~~VR~~Aa~a~~~l 1992 (2058)
|.+.++++|+|.+||+.|..|++.+
T Consensus 561 ~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 561 PILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 8888889999999999999999876
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-30 Score=342.07 Aligned_cols=561 Identities=17% Similarity=0.230 Sum_probs=448.7
Q ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCcc-chhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCC
Q 000143 1217 MTFLISRALADTNADVRGRMLNAGIMIIDKHGRD-NVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDD 1295 (2058)
Q Consensus 1217 ~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~~-~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~ 1295 (2058)
+..|+ ..+.+.+..+|..+++....+....|.+ ..++++|.+.+.+.+. +.++..+++.||.++..+.. .
T Consensus 12 i~~l~-~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~-------~ev~~~~~~~l~~~~~~~~~-~ 82 (588)
T d1b3ua_ 12 IAVLI-DELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-------DEVLLALAEQLGTFTTLVGG-P 82 (588)
T ss_dssp HHHHH-HHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCC-------HHHHHHHHHHHTTCSGGGTS-G
T ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHcCC-h
Confidence 44454 5789999999999988877766666654 4678999998886541 24777777777777665432 2
Q ss_pred cchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc-chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcccc
Q 000143 1296 PKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSL 1374 (2058)
Q Consensus 1296 p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~-~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l 1374 (2058)
.+...+++.+...+.+++..||.+++.++..+...... .....+..++..+.+++.+..|..|+..++.+....+....
T Consensus 83 ~~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~ 162 (588)
T d1b3ua_ 83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK 162 (588)
T ss_dssp GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHH
T ss_pred hHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHH
Confidence 24667778888888999999999999999988876533 34555666777888877777888888777777665544332
Q ss_pred chhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh
Q 000143 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ 1454 (2058)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~ 1454 (2058)
..+++.+.+.++|+ ++.+|+.+..+++.+++..+. +.....++|.+...++|+++.||..|..++..++..++.+
T Consensus 163 --~~l~~~~~~l~~D~-~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~ 237 (588)
T d1b3ua_ 163 --AELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE 237 (588)
T ss_dssp --HHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred --HHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH
Confidence 25778888887777 899999999999999987764 3334568899999999999999999999999999888776
Q ss_pred hH-HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-
Q 000143 1455 GV-KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN- 1532 (2058)
Q Consensus 1455 ~v-~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~- 1532 (2058)
.. ..++|.+...+.|.+|++|..++..++.++...+..... ..++|.+...++|+++.||..|+.+++.++..++.
T Consensus 238 ~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~ 315 (588)
T d1b3ua_ 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK--TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH--HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhh--hhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhh
Confidence 65 678899999999999999999999999998776554332 47899999999999999999999999999987753
Q ss_pred ----hhHHhHHHHHHhccCCCChhHHHHHH-HHHhccccccC-ChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh
Q 000143 1533 ----PEIASLVPTLLMGLTDPNDHTKYSLD-ILLQTTFVNTV-DAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSL 1606 (2058)
Q Consensus 1533 ----~~i~~lvp~Ll~~l~d~~~~vr~al~-~L~~~~f~~~~-~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~ 1606 (2058)
..+..++|.+...+.|++..+|.++. .+.. ..... .......++|.+...++|.++++|..+...++.+...
T Consensus 316 ~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~--~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~ 393 (588)
T d1b3ua_ 316 CRENVIMSQILPCIKELVSDANQHVKSALASVIMG--LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGG--GHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred hhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhh--hhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Confidence 24588999999999999999985443 2222 11111 1234566889999999999999999998888887765
Q ss_pred hCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCc-cchHHHHHhhcccCCChHHHhhHHHHHHHH
Q 000143 1607 VTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENF-PDLVSWLLDALKSDNSNVERSGAAQGLSEV 1685 (2058)
Q Consensus 1607 l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~-~~llp~L~~~L~~d~~~~~R~~aa~~L~~i 1685 (2058)
++ .....+.++|.+...+.|++|++|..++.+++.++..+|.+.+ +.+.|.++..+. |+.+.+|..++.+++.+
T Consensus 394 ~~----~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-D~~~~VR~~A~~~L~~l 468 (588)
T d1b3ua_ 394 IG----IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-DHVYAIREAATSNLKKL 468 (588)
T ss_dssp SC----HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG-CSSHHHHHHHHHHHHHH
T ss_pred cc----hhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhcc-CCchhHHHHHHHHHHHH
Confidence 32 2345667899999999999999999999999999999998754 567777766665 67788999999999999
Q ss_pred HHHhchhH-HHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 000143 1686 LAALGTVY-FEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVL 1764 (2058)
Q Consensus 1686 ~~~~g~~~-l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~l 1764 (2058)
+..+|.+. .+.++|.+.....++++.+|..++.+++.+...++.++ +.+.++|.+++.+.|+.++||..+++++..+
T Consensus 469 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~--~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i 546 (588)
T d1b3ua_ 469 VEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAKSLQKI 546 (588)
T ss_dssp HHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999874 46788999999999999999999999999998887654 5677999999999999999999999999998
Q ss_pred HHHhcccch-hchHHhHhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1765 VEHYATTSL-PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1765 v~~~~~~~l-~~llp~L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
...+....+ ..+.|.+.....|++..||..|.+.+..|
T Consensus 547 ~~~~~~~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 547 GPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHcCcHhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 776665544 34778888888999999999999888765
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.8e-27 Score=341.74 Aligned_cols=921 Identities=16% Similarity=0.172 Sum_probs=598.9
Q ss_pred HHHHHHHHHHHcc-ccchHHHHHHHHHHHHhcCChHHHH----HHHhhhcCCChhHHHHHHHhhhcCCccccC-----CC
Q 000143 1023 LRMISVLYHVLGV-VPSYQAAIGSALNELCLGLQPNEVA----SALHGVYTKDVHVRMACLNAVKCIPAVSTR-----SL 1092 (2058)
Q Consensus 1023 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~----~ll~~l~~~~~~vR~~al~~L~~~~~~~~~-----~~ 1092 (2058)
.+++..|+.++.. +|.++..|.+||+.++..+....+. .|+..+.+++..+|..+..+|..+...... .+
T Consensus 44 ~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~ 123 (1207)
T d1u6gc_ 44 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 123 (1207)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchh
Confidence 3578888888864 7889999999999999988875444 455667788999999988887665322110 11
Q ss_pred Cc--hhhhhhHhhhhc-CCCchHHHHHHH----HHHhhcCCCCCCC---H-HhHHHHhcCCCHHHHHHHHHHHHHHHHhC
Q 000143 1093 PE--NIEVSTSLWIAV-HDPEKSVAEAAE----DIWDRYGYDFGTD---Y-SGLFKALSHSNYNVRLAAAEALATALDEY 1161 (2058)
Q Consensus 1093 ~~--~~~~~~~~~~a~-~d~~~~~r~~a~----~~w~~~~~~~~~~---~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~~ 1161 (2058)
.. ...+.+.+--+. ...+..++.-+- .+....|..+.+. + ..++..+.+++..||+.|+.+++.++...
T Consensus 124 ~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~ 203 (1207)
T d1u6gc_ 124 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 203 (1207)
T ss_dssp HHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence 00 011222222222 223444444333 3344455433322 3 66777889999999999999999998765
Q ss_pred CC-chHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhCC---CChHHHHHHHHHhhccCCCHHHHHHHH
Q 000143 1162 PD-SIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLRT---KDLPVIMTFLISRALADTNADVRGRML 1237 (2058)
Q Consensus 1162 ~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~~---~~~~~l~~~Li~~~L~d~~~~VR~~al 1237 (2058)
++ .+..++..+++.+.. +..+..|.+++.+++.++...+. ...+.+++.++ +++.+.++.+|..++
T Consensus 204 ~~~~~~~~~~~ll~~l~~---------~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~-~~l~~~~~~~r~~al 273 (1207)
T d1u6gc_ 204 GNIVFVDLIEHLLSELSK---------NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVV-KFCNVDDDELREYCI 273 (1207)
T ss_dssp ----CTTHHHHHHHHHHH---------TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHH-HHHSSCCTTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHcc---------CCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHH-HHhcCccHHHHHHHH
Confidence 54 445566666655432 24566888889999998876543 33466777775 677888999999999
Q ss_pred HHHHHHHHhhCccc---hhhHHHHHHHHhcc-c-------------------------------CCChhHHHHHHHHHHH
Q 000143 1238 NAGIMIIDKHGRDN---VSLLFPIFENYLNK-K-------------------------------ASDEEKYDLVREGVVI 1282 (2058)
Q Consensus 1238 ~a~~~~i~~~g~~~---~~~Ll~~l~~~L~~-~-------------------------------~~~~e~~~~vR~~av~ 1282 (2058)
.+...++...+... ...+++.+..++.. + ..++..+ .+|..++.
T Consensus 274 ~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~-~vR~~a~~ 352 (1207)
T d1u6gc_ 274 QAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSW-KVRRAAAK 352 (1207)
T ss_dssp HHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTT-HHHHHHHH
T ss_pred HHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhH-HHHHHHHH
Confidence 88887777665443 33344333222211 0 0011122 68999999
Q ss_pred HHHHHHhHhccC-CcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc-------------------chHHHHHHH
Q 000143 1283 FTGALAKHLAKD-DPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-------------------EAPTLVSRL 1342 (2058)
Q Consensus 1283 ~Lg~La~~l~~~-~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~-------------------~~~~~v~~L 1342 (2058)
+++.++...+.. .+.++.+++.++..+.++++.|+..+..++..++..... .....++.+
T Consensus 353 ~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i 432 (1207)
T d1u6gc_ 353 CLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNI 432 (1207)
T ss_dssp HHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHH
Confidence 999998654332 134556788899999999999999998888877654311 012233333
Q ss_pred HHH---HhcCCCHHHHHHHHHHHHHHHhhhCccccch-hchHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHhc-ccchh
Q 000143 1343 LDQ---LMKSDKYGERRGAAFGLAGVVKGFGISSLKK-YGIAATLREGLADR-NSAKRREGALLAFECLCEKLG-RLFEP 1416 (2058)
Q Consensus 1343 l~~---L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~-~~il~~L~~~l~~~-~~~~~R~~al~al~~L~~~lg-~~~~p 1416 (2058)
++. ...+.+..+|..+...+..++...+...... ..+++.+...+.+. .....|..++.++..+....+ +.+.|
T Consensus 433 ~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~ 512 (1207)
T d1u6gc_ 433 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHP 512 (1207)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHH
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHH
Confidence 333 2345578899999999999988766443321 24566666666554 245678888888888887655 56889
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh----------hHHhHHHHHHHhcc--CCChHHHHHHHHHHHH
Q 000143 1417 YVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ----------GVKLVLPSLLKGLE--DKAWRTKQSSVQLLGA 1484 (2058)
Q Consensus 1417 ~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~----------~v~~llp~Ll~~L~--~~~~~~R~~a~~~Lg~ 1484 (2058)
|+..+.+.+...+.|....++..+..++..+...+.+. .+..+++.++..+. +.+...|..++.+++.
T Consensus 513 ~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~ 592 (1207)
T d1u6gc_ 513 HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQ 592 (1207)
T ss_dssp HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999888765431 24667777777776 4567889999999999
Q ss_pred HHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc----hhHHhHHHHHHhccCCCChhHH-HHHHH
Q 000143 1485 MAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN----PEIASLVPTLLMGLTDPNDHTK-YSLDI 1559 (2058)
Q Consensus 1485 la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~----~~i~~lvp~Ll~~l~d~~~~vr-~al~~ 1559 (2058)
+....++.+..+++.+++.+...+.+. ..|..+..++..++..... +++..+++.+...+.+.+..+| .++.+
T Consensus 593 l~~~~~~~~~~~~~~~l~~l~~~l~~~--~~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~ 670 (1207)
T d1u6gc_ 593 IICNLGDNLGSDLPNTLQIFLERLKNE--ITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSA 670 (1207)
T ss_dssp HHHHTGGGCCTHHHHHHHHHHHHTTSS--SHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcch--hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 999888888888999999999888764 4688889999888765432 5677888889999998888887 45555
Q ss_pred HHh--ccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCH----
Q 000143 1560 LLQ--TTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIP---- 1633 (2058)
Q Consensus 1560 L~~--~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~---- 1633 (2058)
+.. ..+...........+++.+...+.+.+..++..+..+++.++.. .+....++...+++.+...+.++..
T Consensus 671 L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~--~~~~~~~~~~~il~~l~~~~~s~l~~~~~ 748 (1207)
T d1u6gc_ 671 LDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKV--YPSSLSKISGSILNELIGLVRSPLLQGGA 748 (1207)
T ss_dssp HHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTS--CGGGGGGTTTTTHHHHHHHHTCTTCCHHH
T ss_pred HHHHHHhccccchhHHHhhHHHhhccccccccHHHHHHHHHHHHHHHhh--cchhhhhHHHHHHHHHHHHhcCchhhhhh
Confidence 543 12223333344555666667778888889999888888888763 2333344444444444444332210
Q ss_pred ------------------------------------------HHHHHHHHHHHHHHHhhcccCccchHHHHHhhcc-cCC
Q 000143 1634 ------------------------------------------EVRSVAARAIGSLIRGMGEENFPDLVSWLLDALK-SDN 1670 (2058)
Q Consensus 1634 ------------------------------------------~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~-~d~ 1670 (2058)
.......++++.+....+.. ....+..++.... .+.
T Consensus 749 ~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~~~~l~~~l~~~~~~~~ 827 (1207)
T d1u6gc_ 749 LSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKE-GPAVVGQFIQDVKNSRS 827 (1207)
T ss_dssp HHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCC-SHHHHTTTTTTTTTTTC
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHhcccc
Confidence 11112223333333222221 1111111112121 223
Q ss_pred ChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhch---------------------
Q 000143 1671 SNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGV--------------------- 1729 (2058)
Q Consensus 1671 ~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~--------------------- 1729 (2058)
....|..+..+++++....+.....++.+.++..+.++++.+|.++..++|.++.....
T Consensus 828 ~~~~~~~al~~Lge~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~~~ll 907 (1207)
T d1u6gc_ 828 TDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLL 907 (1207)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHhcCchHHHHHH
Confidence 33456666667777766665544455666666777777777777777777766543222
Q ss_pred -------------hHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHH
Q 000143 1730 -------------QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSV 1796 (2058)
Q Consensus 1730 -------------~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav 1796 (2058)
.+.+|.+.+++.++..+.++++.+|..+.++++.++..... .++|.+...+.++++.+|..++
T Consensus 908 ~al~ei~~~~~~~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~----~~lp~L~~~l~~~~~~~r~~ai 983 (1207)
T d1u6gc_ 908 HSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE----TLLPRLKGYLISGSSYARSSVV 983 (1207)
T ss_dssp HHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG----GTHHHHTTTSSSSCHHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHhCCCCHHHHHHHH
Confidence 22344455555555555555555666666666555433222 2555666666666666666655
Q ss_pred HHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh
Q 000143 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP 1876 (2058)
Q Consensus 1797 ~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~ 1876 (2058)
..++.++. +. +...+ +....++..++..+.|++..||++|+.++..++++.|
T Consensus 984 ~~l~~~~~---------------~~-~~~~~------------~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p 1035 (1207)
T d1u6gc_ 984 TAVKFTIS---------------DH-PQPID------------PLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKP 1035 (1207)
T ss_dssp HHTGGGCC---------------SS-CCTHH------------HHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHH---------------hc-chhhH------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCh
Confidence 55544320 00 00000 0111233344556789999999999999999999999
Q ss_pred hhHHHhHHHHHHHHHHHhc------------------CCCHHHHHHHHHHHHHHHHHhCcc-hhhchHHHHhhhcCCCCh
Q 000143 1877 KTLKEIMPVLMNTLISSLA------------------SSSSERRQVAGRALGELVRKLGER-VLPSIIPILSRGLKDPSA 1937 (2058)
Q Consensus 1877 ~~l~~~l~~L~~~l~~~L~------------------~~~~~~R~~A~~~Lg~L~~~lg~~-~l~~llp~L~~~l~d~~~ 1937 (2058)
.-+.++++.++|.++.... |+.-++|..|.+|+..+...+.+. ...++++.+..++.|. .
T Consensus 1036 ~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~~~~~~~~~gl~d~-~ 1114 (1207)
T d1u6gc_ 1036 SLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKDH-Y 1114 (1207)
T ss_dssp GGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSSC-H
T ss_pred HHHHHHHHHHHHHHHHHhccchhheeeeecCCceeecCCcHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHhcccch-H
Confidence 9999999999999986422 345789999999999999887655 4678889999999885 5
Q ss_pred hHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcC----C--------CHHHHHHHHHHHHHHH
Q 000143 1938 SRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCD----S--------ILEVRESAGLAFSTLF 1993 (2058)
Q Consensus 1938 ~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D----~--------d~~VR~~Aa~a~~~l~ 1993 (2058)
++|.-++..+..++...+ ..+.++++.+++.+++.+.- . ..+....+..++..+.
T Consensus 1115 di~~~~~~~l~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~~l~ 1181 (1207)
T d1u6gc_ 1115 DIKMLTFLMLVRLSTLCP-SAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALL 1181 (1207)
T ss_dssp HHHHHHHHHHHHHHHSCC-HHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHhcccCcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 899999988998887664 45678999999999998742 1 1345555555555554
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.3e-32 Score=380.35 Aligned_cols=686 Identities=15% Similarity=0.172 Sum_probs=498.4
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHH--------HHHhhcCCCC
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAE--------DIWDRYGYDF 1128 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~--------~~w~~~~~~~ 1128 (2058)
.++..+|.++++||.++|..|.+.|++.. ..+++ ..++..++....+.+..+|++|. ..|...+.+.
T Consensus 11 ~ql~~~L~~~~s~d~~~r~~A~~~L~~~~--~~p~~---~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~ 85 (888)
T d1qbkb_ 11 QQILQLLKESQSPDTTIQRTVQQKLEQLN--QYPDF---NNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV 85 (888)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHTTSTTTST--TSTTT---TTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHHTTCSTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHH--hCCCH---HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccCCHHH
Confidence 46778899999999999999999999874 12232 34555565555666777888864 4577665555
Q ss_pred CCCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhh
Q 000143 1129 GTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAAD 1206 (2058)
Q Consensus 1129 ~~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~ 1206 (2058)
.+.+ ..++..+.+++..||+.++.+++.++.. .|+.|+++++.|.+.+. +.++..|.+++.+++.+++
T Consensus 86 ~~~Ik~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~Wpell~~L~~~l~----------s~~~~~~~~al~~L~~i~e 155 (888)
T d1qbkb_ 86 TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLD----------SEDYNTCEGAFGALQKICE 155 (888)
T ss_dssp CHHHHHHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCSSTTTSTTTTTSST----------GGGSSCSSSSSTTTHHHHG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHhC----------CCCHHHHHHHHHHHHHHHH
Confidence 5566 8888999999999999999999999864 35567777776664321 2345678888888888765
Q ss_pred h----hCCC----ChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhCc---cchhhHHHHHHHHhcccCCChhHHHH
Q 000143 1207 V----LRTK----DLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHGR---DNVSLLFPIFENYLNKKASDEEKYDL 1275 (2058)
Q Consensus 1207 ~----~~~~----~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g~---~~~~~Ll~~l~~~L~~~~~~~e~~~~ 1275 (2058)
. +..+ ..+.+++.++ +++.+.++.+|..++.+...++...+. .+++.+++.+..... +++. .
T Consensus 156 ~~~~~~~~~~~~~~~~~ll~~ll-~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~--~ 228 (888)
T d1qbkb_ 156 DSAEILDSDVLDRPLNIMIPKFL-QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAG----DEEP--E 228 (888)
T ss_dssp GGHHHHHTC---CCSTTTTHHHH-TGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSS----CCCS--S
T ss_pred HhHHHhhHHHHHHHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcC----Ccch--H
Confidence 2 2222 2234555554 577888899999988887766654432 234445554444432 2223 6
Q ss_pred HHHHHHHHHHHHHhHhcc-CCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc------ccchHHHHHHHHH----
Q 000143 1276 VREGVVIFTGALAKHLAK-DDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM------QDEAPTLVSRLLD---- 1344 (2058)
Q Consensus 1276 vR~~av~~Lg~La~~l~~-~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~------~~~~~~~v~~Ll~---- 1344 (2058)
+|..++.+++.+.+.... ..|++..+++.++..+.++++.|+..+++.+..+.... .+....+++.++.
T Consensus 229 vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~ 308 (888)
T d1qbkb_ 229 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 308 (888)
T ss_dssp STTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 899999999888764332 35778888888889999999999987776543332110 0000000000000
Q ss_pred -------------------------------------------------HHh---c---CCCHHHHHHHHHHHHHHHhhh
Q 000143 1345 -------------------------------------------------QLM---K---SDKYGERRGAAFGLAGVVKGF 1369 (2058)
Q Consensus 1345 -------------------------------------------------~L~---~---~~~~~vR~~Aa~~L~~l~~~~ 1369 (2058)
... . ...|..|+.++.+|..++...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~ 388 (888)
T d1qbkb_ 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY 388 (888)
T ss_dssp SSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTC
T ss_pred chHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhh
Confidence 000 0 013667999999998888877
Q ss_pred CccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 000143 1370 GISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMS 1449 (2058)
Q Consensus 1370 g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~ 1449 (2058)
|...++ .+++.+.+.+.++ +|..|++|+.+|+.+++++.+.+.|++.+++|.++..+.|+++.||.++++++++++.
T Consensus 389 ~~~il~--~~l~~l~~~l~s~-~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 465 (888)
T d1qbkb_ 389 RDELLP--HILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAH 465 (888)
T ss_dssp CSSSHH--HHHHHHHHTTTSS-SHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHH
T ss_pred HHHHHH--HHHHHHHHhhccc-hhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 766553 6788888888877 8999999999999999988888899999999999999999999999999999999987
Q ss_pred hhhhhh----HHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000143 1450 QLSAQG----VKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQ 1525 (2058)
Q Consensus 1450 ~l~~~~----v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~ 1525 (2058)
...+.. +..+++.++..+.+.++++|..|+.+|+.+++.++..+.+|++.+++.+...+.+....++..+..+++.
T Consensus 466 ~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~ 545 (888)
T d1qbkb_ 466 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGT 545 (888)
T ss_dssp HHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 665432 3678899999999999999999999999999988888999999999999999999888999999999998
Q ss_pred HHhhcCc-----hhHHhHHHHHHhccC---CCChhHH---HHHHHHHh---ccccccCChhhHhhHHHHHHHhh------
Q 000143 1526 VGSVIKN-----PEIASLVPTLLMGLT---DPNDHTK---YSLDILLQ---TTFVNTVDAPSLALLVPIVHRGL------ 1585 (2058)
Q Consensus 1526 l~~~~~~-----~~i~~lvp~Ll~~l~---d~~~~vr---~al~~L~~---~~f~~~~~~~~l~~llp~L~~~L------ 1585 (2058)
+++.+++ ++++.++|.+..... +.+.... +++..+.. ..|..+. .+....++..+...+
T Consensus 546 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~ 624 (888)
T d1qbkb_ 546 LADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYC-EPVYQRCVNLVQKTLAQAMLN 624 (888)
T ss_dssp HHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8876542 356777777766543 3333222 34443332 1111111 111122222222211
Q ss_pred -------cCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh--hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---
Q 000143 1586 -------RERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG--LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--- 1653 (2058)
Q Consensus 1586 -------~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~--~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~--- 1653 (2058)
...+.+....+...++.+.+.++. .+.++.. .+++.+...+.|.++.+|..+...+|.++..++..
T Consensus 625 ~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~ 702 (888)
T d1qbkb_ 625 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKP 702 (888)
T ss_dssp HHCTTTSCCCCTHHHHHHHHHHHHHHHHHTT--TTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred hcccccccchhHHHHHHHHHHHHHHHHHhhh--hhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHH
Confidence 123455666777788888876554 4566654 47888999999999999999999999999988876
Q ss_pred CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhc
Q 000143 1654 NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLG 1728 (2058)
Q Consensus 1654 ~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g 1728 (2058)
|.+.++|.+.+.|.+ ....++..+++++|+++...|.+ |++.+++.+...++++ +..+++.++.++|.++...+
T Consensus 703 ~l~~~~~~l~~~L~~-~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p 781 (888)
T d1qbkb_ 703 CIADFMPILGTNLNP-EFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCP 781 (888)
T ss_dssp GHHHHHHHHHHTCCG-GGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCH
Confidence 667899999998874 45568899999999999998876 5678888888888775 56699999999999999999
Q ss_pred hhHHHhHHHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHHhccc
Q 000143 1729 VQFQNYLQQVLPAILDGLAD-ENESVRDAALGAGHVLVEHYATT 1771 (2058)
Q Consensus 1729 ~~f~pyl~~ilp~Ll~~L~d-~~~~VR~~a~~al~~lv~~~~~~ 1771 (2058)
+.+.||++.++++++..+.+ ++.+-++.+...+..++..-...
T Consensus 782 ~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~ 825 (888)
T d1qbkb_ 782 QEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSG 825 (888)
T ss_dssp HHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHH
Confidence 99999999999999998865 23345778888888887654443
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.1e-33 Score=386.08 Aligned_cols=755 Identities=12% Similarity=0.158 Sum_probs=529.1
Q ss_pred cchhhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCCCHHHHHHHHHhhHhhHh
Q 000143 1250 DNVSLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTPSEAVQRAVSSCLSPLMQ 1329 (2058)
Q Consensus 1250 ~~~~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~ 1329 (2058)
+.+.+|..++..++. ++..+|..|-..|..+.. .|.+...+..++..+.+++..+|..++-.|...+.
T Consensus 8 ~~l~ql~~~L~~~~s-------~d~~~r~~A~~~L~~~~~-----~p~~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~ 75 (888)
T d1qbkb_ 8 QGLQQILQLLKESQS-------PDTTIQRTVQQKLEQLNQ-----YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVK 75 (888)
T ss_dssp TTHHHHHHHHTTCCH-------HHHHHHHHHTTSTTTSTT-----STTTTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHH
T ss_pred HHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 345566665544421 122578777666655422 12233333444555566677788877666655554
Q ss_pred hc----ccchHHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000143 1330 SM----QDEAPTLVS-RLLDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFE 1404 (2058)
Q Consensus 1330 ~~----~~~~~~~v~-~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~ 1404 (2058)
.. .++....+. .++..+ .+.+..+|..++.+++.++...++..++ +++|.|.+.+.+. ++..|++++.+++
T Consensus 76 ~~w~~~~~~~~~~Ik~~ll~~l-~~~~~~vr~~~~~~i~~i~~~~~~~~Wp--ell~~L~~~l~s~-~~~~~~~al~~L~ 151 (888)
T d1qbkb_ 76 AHFQNFPNGVTDFIKSECLNNI-GDSSPLIRATVGILITTIASKGELQNWP--DLLPKLCSLLDSE-DYNTCEGAFGALQ 151 (888)
T ss_dssp HHTTCSTTTCCHHHHHHHTTGG-GCCCSSTTTTTTTTTHHHHTTTSSCSST--TTSTTTTTSSTGG-GSSCSSSSSTTTH
T ss_pred HhhccCCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCccchH--HHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 32 333444554 444444 4556789999999999999877776654 7888888888765 6778999999999
Q ss_pred HHHHHhccc-----chhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hhHHhHHHHHHHhccCCChHHHH
Q 000143 1405 CLCEKLGRL-----FEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGVKLVLPSLLKGLEDKAWRTKQ 1476 (2058)
Q Consensus 1405 ~L~~~lg~~-----~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~v~~llp~Ll~~L~~~~~~~R~ 1476 (2058)
.+++..+.. +..++..++|.++..+.++++.+|..|..++..+....+. ..++.+++.++....++++.+|.
T Consensus 152 ~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~ 231 (888)
T d1qbkb_ 152 KICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRK 231 (888)
T ss_dssp HHHGGGHHHHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTT
T ss_pred HHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 998754432 2334456899999999999999999999999877654443 23477888899999999999999
Q ss_pred HHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcC-----chhHHhHHHHHHhccCCCCh
Q 000143 1477 SSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIK-----NPEIASLVPTLLMGLTDPND 1551 (2058)
Q Consensus 1477 ~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~-----~~~i~~lvp~Ll~~l~d~~~ 1551 (2058)
.++.+++.+....++.+.++++.+++.+...+.|.+..||..|++.+..+++.-. .+++..++|.+...+.+...
T Consensus 232 ~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~ 311 (888)
T d1qbkb_ 232 NVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDI 311 (888)
T ss_dssp HHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSST
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchH
Confidence 9999999999989999999999999999999999999999999988777664311 24556777777666655543
Q ss_pred hHHHHHHHHHh----------c--cccccC--ChhhHhhHHH----HHHHhh---cCCCHHHHHHHHHHHHHHHhhhCCC
Q 000143 1552 HTKYSLDILLQ----------T--TFVNTV--DAPSLALLVP----IVHRGL---RERSAETKKKAAQIVGNMCSLVTEP 1610 (2058)
Q Consensus 1552 ~vr~al~~L~~----------~--~f~~~~--~~~~l~~llp----~L~~~L---~d~s~~vr~~A~~~l~~L~~~l~~~ 1610 (2058)
........... . .+.... .......... ...... .+..|.+|+.+..+++.++...++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~- 390 (888)
T d1qbkb_ 312 DIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRD- 390 (888)
T ss_dssp THHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCS-
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHH-
Confidence 32200000000 0 000000 0000000000 000000 113466788888888887765432
Q ss_pred CchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHH
Q 000143 1611 KDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLA 1687 (2058)
Q Consensus 1611 ~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~ 1687 (2058)
. .++.+++.+...+.+++|..|++|..++|.++++..+. ++++++|.++..+. |++..+|..++++++.++.
T Consensus 391 -~---il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~-d~~~~Vr~~a~~~l~~~~~ 465 (888)
T d1qbkb_ 391 -E---LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS-DKKALVRSITCWTLSRYAH 465 (888)
T ss_dssp -S---SHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHTHH
T ss_pred -H---HHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhcc-CCCHHHHHHHHHHHHHHHH
Confidence 2 45668889999999999999999999999998765443 67889999999887 6777899999999999887
Q ss_pred Hhchh----HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 000143 1688 ALGTV----YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHV 1763 (2058)
Q Consensus 1688 ~~g~~----~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~ 1763 (2058)
.+... ++..+++.++..+.++++.||.+++.++..+....+..+.||++.+++.++..+.+.....+..+.+++..
T Consensus 466 ~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~ 545 (888)
T d1qbkb_ 466 WVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGT 545 (888)
T ss_dssp HHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 66432 56789999999999999999999999999999999999999999999999999999888888888899988
Q ss_pred HHHHhccc-----chhchHHhHhhhc---CCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHH
Q 000143 1764 LVEHYATT-----SLPLLLPAVEDGI---FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIE 1835 (2058)
Q Consensus 1764 lv~~~~~~-----~l~~llp~L~~~l---~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~ 1835 (2058)
++...+.. ..+.++|.+.... .+++ ..+...++.++.+.........+ ..+.....+..
T Consensus 546 l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~le~l~~i~~~~~~~~~~------------~~~~~~~~~~~ 612 (888)
T d1qbkb_ 546 LADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED-KDLFPLLECLSSVATALQSGFLP------------YCEPVYQRCVN 612 (888)
T ss_dssp HHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTC-TTHHHHHHHHHHHHHHSTTTTHH------------HHHHHHHHHHH
T ss_pred HHHhhhccccchHHHHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHhHHHHhh------------hHHHHHHHHHH
Confidence 88766543 2333555544322 2222 22233455555553221100000 00111111111
Q ss_pred HhChhhHHHHHHHHHH-hhcCCCHHHHHHHHHHHHHHHhhChhhHHHhHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000143 1836 VLGRDKRNEVLAALYM-VRSDVSLSVRQAALHVWKTIVANTPKTLKEIMP--VLMNTLISSLASSSSERRQVAGRALGEL 1912 (2058)
Q Consensus 1836 ~Lg~~~~~~vL~~L~~-~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l~--~L~~~l~~~L~~~~~~~R~~A~~~Lg~L 1912 (2058)
.+.............. ...+....+...+.+++..++...+..+.+++. .+++.+..++.+.+.++|+.|..++|++
T Consensus 613 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl 692 (888)
T d1qbkb_ 613 LVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 692 (888)
T ss_dssp HHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 1111000000000000 012234456667778888888766666666654 3778888899999999999999999999
Q ss_pred HHHhCcc---hhhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCC--CHHHHHHHHH
Q 000143 1913 VRKLGER---VLPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDS--ILEVRESAGL 1987 (2058)
Q Consensus 1913 ~~~lg~~---~l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~--d~~VR~~Aa~ 1987 (2058)
+..++.. +++.++|.+.+.++++.++++.++|+++|+++...+ +.+.||++.+++.|.+.++++ +..|+++++.
T Consensus 693 ~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~-~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~ 771 (888)
T d1qbkb_ 693 TKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG-IEMQPYIPMVLHQLVEIINRPNTPKTLLENTAI 771 (888)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTG-GGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHH
Confidence 9998866 467899999999998889999999999999998876 468999999999999999764 5679999999
Q ss_pred HHHHHHHHhCh---hhHHHHHHHHHHhcCC---CcchHHHHHHHHHHHhhcCCccchhh
Q 000143 1988 AFSTLFKSAGM---QAIDEIVPTLLHALED---DQTSDTALDGLKQILSVRTTAVLPHI 2040 (2058)
Q Consensus 1988 a~~~l~~~~g~---~~~~~ilp~Ll~~L~~---~~~~~~al~aL~~i~~~~~~~~lp~l 2040 (2058)
|+|++....+. ++++++++.|+..|+. .++++.++.|++.+++.+|+.+++.+
T Consensus 772 ~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~l 830 (888)
T d1qbkb_ 772 TIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDF 830 (888)
T ss_dssp HHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHHHHH
Confidence 99999876653 4789999999999974 44688999999999999988887764
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=6.6e-25 Score=303.89 Aligned_cols=742 Identities=13% Similarity=0.143 Sum_probs=503.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh-------
Q 000143 1135 LFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV------- 1207 (2058)
Q Consensus 1135 ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~------- 1207 (2058)
|...+.++|+.+|+.|.+.|..+.+..+. ..+..|.+.+. + .+.+-..|..++..|++....
T Consensus 10 L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~---~~~~~l~~il~----~----~~~~~~~r~~A~i~lkn~i~~~~~~~~~ 78 (861)
T d2bpta1 10 LENSILSPDQNIRLTSETQLKKLSNDNFL---QFAGLSSQVLI----D----ENTKLEGRILAALTLKNELVSKDSVKTQ 78 (861)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHT----C----TTSCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcCch---HHHHHHHHHHH----c----CCCCHHHHHHHHHHHHHHhhcccchhhh
Confidence 33456789999999999999888766432 33334443321 1 123456888888888865421
Q ss_pred ---------hCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhhC-ccchhhHHHHHHHHhcccCCChhHHHHHH
Q 000143 1208 ---------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDKHG-RDNVSLLFPIFENYLNKKASDEEKYDLVR 1277 (2058)
Q Consensus 1208 ---------~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~~g-~~~~~~Ll~~l~~~L~~~~~~~e~~~~vR 1277 (2058)
++++....+...++ +++.++++.||..+..+...++.... ...|+++++.+.+.+... ....+|
T Consensus 79 ~~~~~~~~~i~~~~~~~ik~~ll-~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~-----~~~~~~ 152 (861)
T d2bpta1 79 QFAQRWITQVSPEAKNQIKTNAL-TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE-----QPENVK 152 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT-----SCHHHH
T ss_pred hHHhhhHhcCCHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCC-----CcHHHH
Confidence 12222223444443 57889999999999888777665443 347999999887776542 112578
Q ss_pred HHHHHHHHHHHhHhccCC----cchHHHHHHHHhhhC--CCCHHHHHHHHHhhHhhHhhcccc-----hHHHHHHHHHHH
Q 000143 1278 EGVVIFTGALAKHLAKDD----PKVHAVVDKLLDVLN--TPSEAVQRAVSSCLSPLMQSMQDE-----APTLVSRLLDQL 1346 (2058)
Q Consensus 1278 ~~av~~Lg~La~~l~~~~----p~i~~iv~~Ll~~L~--~~~~~V~~av~~~L~~l~~~~~~~-----~~~~v~~Ll~~L 1346 (2058)
..++.+++.+++.++... +.+..++..++..+. +++..|+..+..|+..++...... ....+..++...
T Consensus 153 ~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 232 (861)
T d2bpta1 153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEA 232 (861)
T ss_dssp HHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHH
Confidence 899999999998665432 345667777777664 456889998999988887665332 122233334444
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCccccch-hchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc--------------
Q 000143 1347 MKSDKYGERRGAAFGLAGVVKGFGISSLKK-YGIAATLREGLADRNSAKRREGALLAFECLCEKLG-------------- 1411 (2058)
Q Consensus 1347 ~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~-~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg-------------- 1411 (2058)
..++++.+|..+..++..++...+....+. ..++..+........++.+|..++..+..+++...
T Consensus 233 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 312 (861)
T d2bpta1 233 TQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPL 312 (861)
T ss_dssp HTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSC
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 566779999999999999998775432211 12333333333344488999999888887776421
Q ss_pred ---ccchhhHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHH
Q 000143 1412 ---RLFEPYVIQMLPLLLVAFSD-------QVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQL 1481 (2058)
Q Consensus 1412 ---~~~~p~l~~llp~Ll~~l~D-------~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~ 1481 (2058)
....+++..++|.+...+.+ ++..+|..+..++..++...+...++.+++.+...+.+.+|+.|.+++.+
T Consensus 313 ~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 392 (861)
T d2bpta1 313 QSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMA 392 (861)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHH
Confidence 11245566788888877643 34578999999999999988887778888888888899999999999999
Q ss_pred HHHHHhhCh-hhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-----hhHHhHHHHHHhccCCCChhHHH
Q 000143 1482 LGAMAYCAP-QQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGLTDPNDHTKY 1555 (2058)
Q Consensus 1482 Lg~la~~~p-~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~i~~lvp~Ll~~l~d~~~~vr~ 1555 (2058)
++.++..+. ..+.++++.+++.+.+.+.|+++.||.+++++++.+++.+++ .++..+++.+.....+.....+.
T Consensus 393 l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 472 (861)
T d2bpta1 393 FGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATN 472 (861)
T ss_dssp HHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHH
Confidence 999998654 457788999999999999999999999999999999987653 34677788887777665433333
Q ss_pred HHHHHHh--cccccc---CChhhHhhHHHHHHHhhc--CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhh
Q 000143 1556 SLDILLQ--TTFVNT---VDAPSLALLVPIVHRGLR--ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVL 1628 (2058)
Q Consensus 1556 al~~L~~--~~f~~~---~~~~~l~~llp~L~~~L~--d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l 1628 (2058)
+...+.. ..+... ...+....++..+..... +.+..++..+..+++.+... .+..+.+|...+++.+...+
T Consensus 473 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~--~~~~~~~~~~~l~~~~~~~l 550 (861)
T d2bpta1 473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEY--ATDTVAETSASISTFVMDKL 550 (861)
T ss_dssp HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH--CCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHH
Confidence 3222221 011111 111222333444443332 34567888888888888875 34567788777776665543
Q ss_pred C----CC-----------CHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhc
Q 000143 1629 V----DP-----------IPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690 (2058)
Q Consensus 1629 ~----d~-----------~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g 1690 (2058)
. .. ...++..+..+++.+....+.. +.+.+++.++..+....+..+|..+..+++.++..+|
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~ 630 (861)
T d2bpta1 551 GQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLG 630 (861)
T ss_dssp HHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhh
Confidence 2 11 1234556666777777776655 4567788888877766667788899999999999998
Q ss_pred hh---HHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHH
Q 000143 1691 TV---YFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE--NESVRDAALGAGHVLV 1765 (2058)
Q Consensus 1691 ~~---~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~--~~~VR~~a~~al~~lv 1765 (2058)
.+ +++.++|.++..+++.++.+|..++.+++.++...|..+.||++.+++.++..+.++ +..+|..++.+++.++
T Consensus 631 ~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~ 710 (861)
T d2bpta1 631 KGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIA 710 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 76 678899999999999999999999999999999999999999999999999999875 3579999999999999
Q ss_pred HHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHH
Q 000143 1766 EHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEV 1845 (2058)
Q Consensus 1766 ~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~v 1845 (2058)
...++.. ..++|.+.. .+...+ .. ..++.. . +. .
T Consensus 711 ~~~~~~~-~~~l~~~~~---------------~l~~~~----~~--------~~~~~~--~-~~------------~--- 744 (861)
T d2bpta1 711 SNIGADF-IPYLNDIMA---------------LCVAAQ----NT--------KPENGT--L-EA------------L--- 744 (861)
T ss_dssp HHHGGGG-HHHHHHHHH---------------HHHHHH----TC--------CCSSSS--H-HH------------H---
T ss_pred HHHHHHH-HHHHHHHHH---------------HHHHHh----Cc--------CCCccc--H-HH------------H---
Confidence 8877542 222222211 111110 00 000000 0 00 0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHhh---ChhhHHHhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhCc
Q 000143 1846 LAALYMVRSDVSLSVRQAALHVWKTIVAN---TPKTLKEIMPVLMNTLISSLAS----SSSERRQVAGRALGELVRKLGE 1918 (2058)
Q Consensus 1846 L~~L~~~~~D~~~~VR~aA~~~l~~lv~~---~~~~l~~~l~~L~~~l~~~L~~----~~~~~R~~A~~~Lg~L~~~lg~ 1918 (2058)
|....+|++++..+..++.+ .+..+.++++.+++.+...+.+ .+.+++..++.++|+++..+|+
T Consensus 745 ---------~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 815 (861)
T d2bpta1 745 ---------DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD 815 (861)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTT
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcc
Confidence 11134677777777777653 4566788889888877766655 3677888999999999999986
Q ss_pred chhh------chHHHHhhhcCCC--ChhHHHHHHHHHHHH
Q 000143 1919 RVLP------SIIPILSRGLKDP--SASRRQGVCIGLSEV 1950 (2058)
Q Consensus 1919 ~~l~------~llp~L~~~l~d~--~~~vR~~a~~aL~ei 1950 (2058)
...+ .+...+.+...+. +...|..+-+|..++
T Consensus 816 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 855 (861)
T d2bpta1 816 GSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQ 855 (861)
T ss_dssp STTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhHHHHHHHHHHHhCcchhHHHHHHHHHHHHHH
Confidence 5322 2333444444444 344555555554444
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.5e-23 Score=286.42 Aligned_cols=695 Identities=13% Similarity=0.129 Sum_probs=493.6
Q ss_pred hhHHHHHHHHhcccCCChhHHHHHHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCC--CHHHHHHHHHhhHhhHhh
Q 000143 1253 SLLFPIFENYLNKKASDEEKYDLVREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQS 1330 (2058)
Q Consensus 1253 ~~Ll~~l~~~L~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~--~~~V~~av~~~L~~l~~~ 1330 (2058)
.++.+.++..+.++ +..+|..|-..|..+.+. + ....+..+++.+.+. +..+|..++..+...+..
T Consensus 4 ~~~~~~L~~~~~s~------d~~~r~~Ae~~L~~~~~~----~--~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~ 71 (861)
T d2bpta1 4 AEFAQLLENSILSP------DQNIRLTSETQLKKLSND----N--FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVS 71 (861)
T ss_dssp HHHHHHHHHHHHCS------SHHHHHHHHHHHHHHHHH----C--HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHhc----C--chHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhc
Confidence 45667777654332 126888888888877642 1 245566777777654 457777666555443321
Q ss_pred ----------------cccchHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCcc-ccchhchHHHHHHHHhCCCC
Q 000143 1331 ----------------MQDEAPTLV-SRLLDQLMKSDKYGERRGAAFGLAGVVKGFGIS-SLKKYGIAATLREGLADRNS 1392 (2058)
Q Consensus 1331 ----------------~~~~~~~~v-~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~-~l~~~~il~~L~~~l~~~~~ 1392 (2058)
+.++....+ ..+++.+ .+++..+|..++.+++.++....+. .+ +++++.|.+.+.++++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l-~~~~~~vr~~~a~~i~~i~~~~~p~~~w--peli~~L~~~~~s~~~ 148 (861)
T d2bpta1 72 KDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL-VSIEPRIANAAAQLIAAIADIELPHGAW--PELMKIMVDNTGAEQP 148 (861)
T ss_dssp SSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHGGGTCC--HHHHHHHHHHTSTTSC
T ss_pred ccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCCcCch--HHHHHHHHHHhcCCCc
Confidence 222333333 3444444 4557899999999999998764443 33 4789999999888777
Q ss_pred HHHHHHHHHHHHHHHHHhcccch---hhHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhhhhhh-----HHhHHHH
Q 000143 1393 AKRREGALLAFECLCEKLGRLFE---PYVIQMLPLLLVAF--SDQVVAVREAAECAARAMMSQLSAQG-----VKLVLPS 1462 (2058)
Q Consensus 1393 ~~~R~~al~al~~L~~~lg~~~~---p~l~~llp~Ll~~l--~D~~~~VR~aA~~al~~l~~~l~~~~-----v~~llp~ 1462 (2058)
+..|.+++.+++.+++..+..+. +.+..+++.++..+ .+.+..||..+..++..++..+.... ...+++.
T Consensus 149 ~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 228 (861)
T d2bpta1 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV 228 (861)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHh
Confidence 88999999999999998875544 44556777777665 45678999999999998876665421 2567777
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHH-HHHhcCCCHHHHHHHHHHHHHHHhhcC----------
Q 000143 1463 LLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL-TEVLTDTHPKVQSAGQTALQQVGSVIK---------- 1531 (2058)
Q Consensus 1463 Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L-~~~L~D~~~~VR~aA~~aL~~l~~~~~---------- 1531 (2058)
+.+.+.+.++.+|..++..+..++...++.+.++++.++..+ .....+.++.+|..++..+..+++...
T Consensus 229 l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~ 308 (861)
T d2bpta1 229 VCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFP 308 (861)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888889999999999999999999998888888888877655 455677889999999998887765421
Q ss_pred ----------chhHHhHHHHHHhccCCCC-------hhHHH-HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHH
Q 000143 1532 ----------NPEIASLVPTLLMGLTDPN-------DHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETK 1593 (2058)
Q Consensus 1532 ----------~~~i~~lvp~Ll~~l~d~~-------~~vr~-al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr 1593 (2058)
.+.+..++|.+...+.+.. ...+. +...+.. ............+.+.+...+.+.+|..|
T Consensus 309 ~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (861)
T d2bpta1 309 QSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL--FAQNCGNHILEPVLEFVEQNITADNWRNR 386 (861)
T ss_dssp TCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHH--HHHHHGGGGHHHHHHHHHHHTTCSSHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH--HHhhcchhhhhhhcchhhhhhhhHHHHHH
Confidence 1234567777777664332 12332 2222221 00111123345567777778888999999
Q ss_pred HHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-----CccchHHHHHhhccc
Q 000143 1594 KKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE-----NFPDLVSWLLDALKS 1668 (2058)
Q Consensus 1594 ~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~-----~~~~llp~L~~~L~~ 1668 (2058)
..+...++.++.. .......+|++.+++.+...+.|+++.||..+..++|.++..+++. +++.+++.+...+.
T Consensus 387 ~~a~~~l~~i~~~-~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~- 464 (861)
T d2bpta1 387 EAAVMAFGSIMDG-PDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ- 464 (861)
T ss_dssp HHHHHHHHHTSSS-SCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccc-
Confidence 9999999888764 2334567899999999999999999999999999999999988764 34556666655544
Q ss_pred CCChHHHhhHHHHHHHHHHHhchh-------HHHHhhHHHHHhhcc--CChhHHHHHHHHHHHhHHHhchhHHHhHHHHH
Q 000143 1669 DNSNVERSGAAQGLSEVLAALGTV-------YFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQVL 1739 (2058)
Q Consensus 1669 d~~~~~R~~aa~~L~~i~~~~g~~-------~l~~llp~Ll~~l~~--~~~~vR~~al~~l~~la~~~g~~f~pyl~~il 1739 (2058)
.+..++..++.++..++..+... +...++..++..... .+..+|..++.++..+....+..+.+|...+.
T Consensus 465 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~ 543 (861)
T d2bpta1 465 -DHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIS 543 (861)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHH
T ss_pred -cChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 23445666777777777665432 344555666555443 46789999999999999999999999988888
Q ss_pred HHHHHhccC----CC-----------HHHHHHHHHHHHHHHHHhcccc---hhchHHhHhhhcCC-CCHHHHHHHHHHHH
Q 000143 1740 PAILDGLAD----EN-----------ESVRDAALGAGHVLVEHYATTS---LPLLLPAVEDGIFN-DNWRIRQSSVELLG 1800 (2058)
Q Consensus 1740 p~Ll~~L~d----~~-----------~~VR~~a~~al~~lv~~~~~~~---l~~llp~L~~~l~d-~~~~vR~sav~ll~ 1800 (2058)
+.+...+.. .. ..++..+..++..++...+... .+.+++.+...+.+ +++.+|..++.+++
T Consensus 544 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~ 623 (861)
T d2bpta1 544 TFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS 623 (861)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHH
Confidence 877665431 11 1234445555566555544332 23345555554433 44667777777777
Q ss_pred HHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChh---hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChh
Q 000143 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRD---KRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPK 1877 (2058)
Q Consensus 1801 ~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~---~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~ 1877 (2058)
.+... +|++ +.+.+++.+..++.|....+|..|..+++.++...+.
T Consensus 624 ~l~~~-------------------------------~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~ 672 (861)
T d2bpta1 624 ALAAS-------------------------------LGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE 672 (861)
T ss_dssp HHHHH-------------------------------HGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHH-------------------------------hhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 66422 2222 3346677777788888889999999999999998999
Q ss_pred hHHHhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhCcch---hhchHHHHhhhcCCCC-----------hhHHH
Q 000143 1878 TLKEIMPVLMNTLISSLASS--SSERRQVAGRALGELVRKLGERV---LPSIIPILSRGLKDPS-----------ASRRQ 1941 (2058)
Q Consensus 1878 ~l~~~l~~L~~~l~~~L~~~--~~~~R~~A~~~Lg~L~~~lg~~~---l~~llp~L~~~l~d~~-----------~~vR~ 1941 (2058)
.+.++++.+++.+++.++++ +.++|..+..|+|+++..+|+.+ +++++|.+.+.++... ..+|.
T Consensus 673 ~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 752 (861)
T d2bpta1 673 DFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLE 752 (861)
T ss_dssp GGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHH
T ss_pred HhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHH
Confidence 99999999999999998875 45789999999999999999774 6788888887765321 23688
Q ss_pred HHHHHHHHHHHhhC--hhhhHhHHhhHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHhCh
Q 000143 1942 GVCIGLSEVMASAG--KSQLLSFMDELIPTIRTALCD----SILEVRESAGLAFSTLFKSAGM 1998 (2058)
Q Consensus 1942 ~a~~aL~eii~~~~--~~~l~~~~~~ll~~L~~~L~D----~d~~VR~~Aa~a~~~l~~~~g~ 1998 (2058)
+++.++..++.... ++.+.||++.+++.+...+.| .+.+++.+++.++|.++...|.
T Consensus 753 ~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 815 (861)
T d2bpta1 753 AVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD 815 (861)
T ss_dssp HHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcc
Confidence 88888888876553 456889999999988887776 4678999999999999988875
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.2e-23 Score=284.75 Aligned_cols=742 Identities=15% Similarity=0.161 Sum_probs=487.9
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhh-----
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADV----- 1207 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~----- 1207 (2058)
-.++....++|..+|+.|.+.|..+.+.++. ..+..|.+.+.. . +.+-.+|..++..|++....
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~---~f~~~L~~i~~~---~-----~~~~~iR~~A~i~lKn~i~~~~~~~ 72 (876)
T d1qgra_ 4 ITILEKTVSPDRLELEAAQKFLERAAVENLP---TFLVELSRVLAN---P-----GNSQVARVAAGLQIKNSLTSKDPDI 72 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHC---T-----TSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcChh---HHHHHHHHHHhc---C-----CCCHHHHHHHHHHHHHHhhccccch
Confidence 3566667789999999999999988766422 233334433321 0 23346899999999876531
Q ss_pred ----------hCCCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHh-hCccchhhHHHHHHHHhcccCCChhHHHHH
Q 000143 1208 ----------LRTKDLPVIMTFLISRALADTNADVRGRMLNAGIMIIDK-HGRDNVSLLFPIFENYLNKKASDEEKYDLV 1276 (2058)
Q Consensus 1208 ----------~~~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i~~-~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~v 1276 (2058)
++++....+...++ +++.+++. +|+.+..+...++.. .+...|++++|.+.+.+.++.. ...+
T Consensus 73 ~~~~~~~~~~i~~~~k~~ik~~ll-~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~----~~~~ 146 (876)
T d1qgra_ 73 KAQYQQRWLAIDANARREVKNYVL-HTLGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS----TEHM 146 (876)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH-HHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC----CHHH
T ss_pred hhhhhcccccCCHHHHHHHHHHHH-HHhcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCC----cHHH
Confidence 12222233444444 56666554 455565665554443 3446799999998888765322 1258
Q ss_pred HHHHHHHHHHHHhHhccC--CcchHHHHHHHHhhhCC--CCHHHHHHHHHhhHhhHhhccc-----chHHHHHHHHHHHh
Q 000143 1277 REGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQLM 1347 (2058)
Q Consensus 1277 R~~av~~Lg~La~~l~~~--~p~i~~iv~~Ll~~L~~--~~~~V~~av~~~L~~l~~~~~~-----~~~~~v~~Ll~~L~ 1347 (2058)
|++++.+++.+++.+... .++...+++.+++.+.+ ++..++..+..++......... ....++...+..+.
T Consensus 147 ~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 226 (876)
T d1qgra_ 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 226 (876)
T ss_dssp HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999766532 35678889999998864 4578888888887766654422 22344555555566
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCccccc--hhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-------------
Q 000143 1348 KSDKYGERRGAAFGLAGVVKGFGISSLK--KYGIAATLREGLADRNSAKRREGALLAFECLCEKLGR------------- 1412 (2058)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~l~~~~g~~~l~--~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~------------- 1412 (2058)
.++++.+|..+..++..+++.......+ ...+.+.+.....+. +...+..++..+..+++....
T Consensus 227 ~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 305 (876)
T d1qgra_ 227 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (876)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh
Confidence 6778999999999999999876433221 113444454555554 677777777777777653110
Q ss_pred --------cchhhHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHH
Q 000143 1413 --------LFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQS 1477 (2058)
Q Consensus 1413 --------~~~p~l~~llp~Ll~~l~-------D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~ 1477 (2058)
....+...++|.+...+. |++..+|.+|..+++.++...+.+.++.+++.+.+.+.+.+|+.|.+
T Consensus 306 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~ 385 (876)
T d1qgra_ 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDA 385 (876)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHH
Confidence 012334456666666543 23456999999999999998888888899999999999999999999
Q ss_pred HHHHHHHHHhhC-hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc-----hhHHhHHHHHHhccCCCCh
Q 000143 1478 SVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN-----PEIASLVPTLLMGLTDPND 1551 (2058)
Q Consensus 1478 a~~~Lg~la~~~-p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~-----~~i~~lvp~Ll~~l~d~~~ 1551 (2058)
++..++.+..++ +..+.++++.+++.+...++|+++.||.+++++++++++.+.+ .++..+++.+...+.+. .
T Consensus 386 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~ 464 (876)
T d1qgra_ 386 AVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-P 464 (876)
T ss_dssp HHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-H
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcCC-H
Confidence 999999998764 5668899999999999999999999999999999999987653 35688889888888764 3
Q ss_pred hHH-HHHHHHHh---c------------cccccCChhhHhhHHHHHHHhhcC---CCHHHHHHHHHHHHHHHhhhCCCCc
Q 000143 1552 HTK-YSLDILLQ---T------------TFVNTVDAPSLALLVPIVHRGLRE---RSAETKKKAAQIVGNMCSLVTEPKD 1612 (2058)
Q Consensus 1552 ~vr-~al~~L~~---~------------~f~~~~~~~~l~~llp~L~~~L~d---~s~~vr~~A~~~l~~L~~~l~~~~~ 1612 (2058)
.++ .+...+.. . ......-.+....+++.+...+.+ ....++..+.+.+..+... ..++
T Consensus 465 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~ 542 (876)
T d1qgra_ 465 RVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKN--SAKD 542 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHT--CCST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhh--hhhH
Confidence 443 23322221 0 011122234456677777776654 2356777788888777663 3345
Q ss_pred hhhhHhhhhHHH----HHhhCCC----CH-------HHHHHHHHHHHHHHHhhccc----CccchHHHHHhhccc-CCCh
Q 000143 1613 MIPYIGLLLPEV----KKVLVDP----IP-------EVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKS-DNSN 1672 (2058)
Q Consensus 1613 l~pyl~~ll~~L----~~~l~d~----~~-------~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~-d~~~ 1672 (2058)
..+++..+++.+ ...+... .. +.+.....++..+....|.+ +.+.+++.+.+.+.. ..+.
T Consensus 543 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~ 622 (876)
T d1qgra_ 543 CYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSG 622 (876)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCc
Confidence 556555444444 3333321 11 22334444555555555543 445677777776653 2345
Q ss_pred HHHhhHHHHHHHHHHHhchh---HHHHhhHHHHHhhccC-ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccC
Q 000143 1673 VERSGAAQGLSEVLAALGTV---YFEHILPDIIRNCSHQ-RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLAD 1748 (2058)
Q Consensus 1673 ~~R~~aa~~L~~i~~~~g~~---~l~~llp~Ll~~l~~~-~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d 1748 (2058)
.++..+..+++.++...|.. +++.++|.+...+++. ++.+|..++.+++.+....+..+.||++.+++.++..+.+
T Consensus 623 ~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~ 702 (876)
T d1qgra_ 623 GVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGN 702 (876)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCC
Confidence 57888899999999888875 6788999999888776 5789999999999999999999999999999999999987
Q ss_pred CC--HHHHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcch
Q 000143 1749 EN--ESVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGAST 1826 (2058)
Q Consensus 1749 ~~--~~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~ 1826 (2058)
++ ..+|..++.+++.++..++... ..+++.+... +.... .. ..+.+..
T Consensus 703 ~~~~~~~k~~~~~~i~~i~~~~~~~~-~~yl~~~l~~---------------l~~~~----~~--------~~~~~~~-- 752 (876)
T d1qgra_ 703 ENVHRSVKPQILSVFGDIALAIGGEF-KKYLEVVLNT---------------LQQAS----QA--------QVDKSDY-- 752 (876)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHGGGG-GGGHHHHHHH---------------HHHHH----TC--------CCCTTCH--
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhHhh-HHHHHHHHHH---------------HHHHH----hc--------ccCccch--
Confidence 64 6799999999999998887642 2222322211 11110 00 0000000
Q ss_pred HHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhh----------ChhhHHHhHHHHHHHHHHHh--
Q 000143 1827 EAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVAN----------TPKTLKEIMPVLMNTLISSL-- 1894 (2058)
Q Consensus 1827 e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~----------~~~~l~~~l~~L~~~l~~~L-- 1894 (2058)
...+. ...+|.....+++.++.. ....+.++++.+++.+....
T Consensus 753 -~~~~~------------------------~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 807 (876)
T d1qgra_ 753 -DMVDY------------------------LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGD 807 (876)
T ss_dssp -HHHHH------------------------HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTC
T ss_pred -hHHHH------------------------HHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 00000 011223333333333211 11234455666655443322
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhCcchh------hchHHHHhhhcCCCChhHHHHHHHHHHHH
Q 000143 1895 ASSSSERRQVAGRALGELVRKLGERVL------PSIIPILSRGLKDPSASRRQGVCIGLSEV 1950 (2058)
Q Consensus 1895 ~~~~~~~R~~A~~~Lg~L~~~lg~~~l------~~llp~L~~~l~d~~~~vR~~a~~aL~ei 1950 (2058)
.+.+..++..|..++|+++..+|.+.. +.+.+.+.+..++++...|..+.++..++
T Consensus 808 ~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~~~ 869 (876)
T d1qgra_ 808 EDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 345788899999999999999998753 45667777778888899999888766543
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.1e-23 Score=289.52 Aligned_cols=753 Identities=16% Similarity=0.178 Sum_probs=491.3
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH-----------------
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED----------------- 1119 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~----------------- 1119 (2058)
+++.++|++++|||.++|++|.+.|.+....+. +.+...+..+. ...+.+..+|.+|..
T Consensus 1 ~~l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~---~~f~~~L~~i~-~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~ 76 (876)
T d1qgra_ 1 MELITILEKTVSPDRLELEAAQKFLERAAVENL---PTFLVELSRVL-ANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (876)
T ss_dssp CCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred CCHHHHHHHHhCcCHHHHHHHHHHHHHHHhcCh---hHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence 467889999999999999999999988752211 12222333332 233445678887753
Q ss_pred --HHhhcCCCCCCCH-HhHHHHhcCCCHHHHHHHHHHHHHHHHh-CC-CchHHHHHHHHHHHHhhcCCCCCCCCCCchhh
Q 000143 1120 --IWDRYGYDFGTDY-SGLFKALSHSNYNVRLAAAEALATALDE-YP-DSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGR 1194 (2058)
Q Consensus 1120 --~w~~~~~~~~~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~~-~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R 1194 (2058)
.|...+.+..+.+ ..+++.+.+++ .+|+.++.+++.++.. +| +.|+++++.|.+.+.. .+.....|
T Consensus 77 ~~~~~~i~~~~k~~ik~~ll~~l~~~~-~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~--------~~~~~~~~ 147 (876)
T d1qgra_ 77 QQRWLAIDANARREVKNYVLHTLGTET-YRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTN--------PNSTEHMK 147 (876)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTTCC-SSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHC--------TTCCHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcC--------CCCcHHHH
Confidence 2444333333445 77888888776 4677789999998754 45 4677778887776542 13445789
Q ss_pred HHHHHHHHHhhhhhCCC----ChHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHHhhCc-----cchhhHHHHHHHHh
Q 000143 1195 QGIALALHSAADVLRTK----DLPVIMTFLISRAL--ADTNADVRGRMLNAGIMIIDKHGR-----DNVSLLFPIFENYL 1263 (2058)
Q Consensus 1195 ~~~~~al~~l~~~~~~~----~~~~l~~~Li~~~L--~d~~~~VR~~al~a~~~~i~~~g~-----~~~~~Ll~~l~~~L 1263 (2058)
.+++.+++.++..+.++ ..+.++..++ .++ .+++..+|..++.+....+..... .....+++.+...+
T Consensus 148 ~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~-~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 226 (876)
T d1qgra_ 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAII-QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 226 (876)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHH-HHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Confidence 99999999998765543 2345666554 344 355678999888876655433221 11234556665554
Q ss_pred cccCCChhHHHHHHHHHHHHHHHHHhHhccC-CcchH-HHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhc----------
Q 000143 1264 NKKASDEEKYDLVREGVVIFTGALAKHLAKD-DPKVH-AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSM---------- 1331 (2058)
Q Consensus 1264 ~~~~~~~e~~~~vR~~av~~Lg~La~~l~~~-~p~i~-~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~---------- 1331 (2058)
.++ +. .+|..++.++..++...... .+++. .+...+...+.+..+.++..+...+..+....
T Consensus 227 ~~~----~~--~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 300 (876)
T d1qgra_ 227 QCP----DT--RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEA 300 (876)
T ss_dssp TCS----SH--HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC----CH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 431 22 68999999999999865543 23333 34455667778888887766555443332210
Q ss_pred ----------cc-----chHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCC
Q 000143 1332 ----------QD-----EAPTLVSRLLDQLMK------SDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADR 1390 (2058)
Q Consensus 1332 ----------~~-----~~~~~v~~Ll~~L~~------~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~ 1390 (2058)
.. ....+++.+.+.+.. ++++..|.+|..++..+....|...++ .+++++.+.+.+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~--~~~~~i~~~l~~~ 378 (876)
T d1qgra_ 301 AEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP--HVLPFIKEHIKNP 378 (876)
T ss_dssp HHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHH--HHHHHHHHHTTCS
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhhh--hhHHHHHHhhccc
Confidence 00 012333444443332 235678999999999999888766553 6788888888776
Q ss_pred CCHHHHHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh-----hHHhHHHHHH
Q 000143 1391 NSAKRREGALLAFECLCEKLG-RLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ-----GVKLVLPSLL 1464 (2058)
Q Consensus 1391 ~~~~~R~~al~al~~L~~~lg-~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~-----~v~~llp~Ll 1464 (2058)
+|..|++++.+++.++++.. ..+.+++.++++.+...+.|+++.||.++..+++.++...+.. .+..+++.+.
T Consensus 379 -~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 457 (876)
T d1qgra_ 379 -DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (876)
T ss_dssp -SHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHH
Confidence 89999999999998887665 4578899999999999999999999999999999999877653 2466777777
Q ss_pred HhccCCChHHHHHHHHHHHHHHhhCh--------------hhHhhhhhhHHHHHHHHhcCC---CHHHHHHHHHHHHHHH
Q 000143 1465 KGLEDKAWRTKQSSVQLLGAMAYCAP--------------QQLSQCLPKIVPKLTEVLTDT---HPKVQSAGQTALQQVG 1527 (2058)
Q Consensus 1465 ~~L~~~~~~~R~~a~~~Lg~la~~~p--------------~~l~~~L~~Iip~L~~~L~D~---~~~VR~aA~~aL~~l~ 1527 (2058)
..+.+ +++++..++..+..+..... ..+.++++.+++.+...+++. +..++..+..++..+.
T Consensus 458 ~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 536 (876)
T d1qgra_ 458 EGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIV 536 (876)
T ss_dssp HHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHH
T ss_pred HHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhh
Confidence 77754 68888888988888876422 235677888888888888653 4678888988888887
Q ss_pred hhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Q 000143 1528 SVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMC 1604 (2058)
Q Consensus 1528 ~~~~~---~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~ 1604 (2058)
....+ +++..+++.++..+. .+.. ........... . .....+...+..+..+.
T Consensus 537 ~~~~~~~~~~~~~~~~~~~~~l~-----------~~l~--~~~~~~~~~~~----~-------~~~~~~~~l~~~l~~~~ 592 (876)
T d1qgra_ 537 KNSAKDCYPAVQKTTLVIMERLQ-----------QVLQ--MESHIQSTSDR----I-------QFNDLQSLLCATLQNVL 592 (876)
T ss_dssp HTCCSTTHHHHHHHHHHHHHHHH-----------HHHT--TTTSCCSTTHH----H-------HHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHH-----------HHHH--Hhhhhcchhhh----H-------HHHHHHHHHHHHHHHHH
Confidence 65543 233333333322211 0000 00000000000 0 00112233334444444
Q ss_pred hhhCCCCchhhhHhhhhHHHHHhhC--CCCHHHHHHHHHHHHHHHHhhccc---CccchHHHHHhhcccCCChHHHhhHH
Q 000143 1605 SLVTEPKDMIPYIGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE---NFPDLVSWLLDALKSDNSNVERSGAA 1679 (2058)
Q Consensus 1605 ~~l~~~~~l~pyl~~ll~~L~~~l~--d~~~~vR~~a~~aLg~l~~~lg~~---~~~~llp~L~~~L~~d~~~~~R~~aa 1679 (2058)
..++ .....++.+.+++.+...+. +++..++..+..+++.++..+|+. |++.++|.+...+.+..+..+|..+.
T Consensus 593 ~~~~-~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~ 671 (876)
T d1qgra_ 593 RKVQ-HQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAV 671 (876)
T ss_dssp TTSC-HHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHcc-hhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 3322 23456677888898888876 356789999999999999999876 67889999999998777777899999
Q ss_pred HHHHHHHHHhchh---HHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCC----C
Q 000143 1680 QGLSEVLAALGTV---YFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADE----N 1750 (2058)
Q Consensus 1680 ~~L~~i~~~~g~~---~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~----~ 1750 (2058)
..++.+....+.. +.+.+++.++..++++ ++.+|..++.+++.++..+|..|.+|++.++|.+.+.+... +
T Consensus 672 ~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~ 751 (876)
T d1qgra_ 672 GLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSD 751 (876)
T ss_dssp HHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTC
T ss_pred HHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccc
Confidence 9999998887765 6788999999998775 57899999999999999999999999999999998876532 1
Q ss_pred HH-------HHHHHHHHHHHHHHHhcccchhchHHhHhhhcCCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCC
Q 000143 1751 ES-------VRDAALGAGHVLVEHYATTSLPLLLPAVEDGIFNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEG 1823 (2058)
Q Consensus 1751 ~~-------VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~ 1823 (2058)
.+ +|+.++.++..++..+... . ....
T Consensus 752 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~--------------------------------------~---------~~~~ 784 (876)
T d1qgra_ 752 YDMVDYLNELRESCLEAYTGIVQGLKGD--------------------------------------Q---------ENVH 784 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCS--------------------------------------S---------SSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccc--------------------------------------c---------ccch
Confidence 11 2233333322222211110 0 0000
Q ss_pred cchHHHHHHHHHHhChhhHHHHHHHHHH--hhcCCCHHHHHHHHHHHHHHHhhChhhHHHhH---HHHHHHHHHHhcCCC
Q 000143 1824 ASTEAHGRAIIEVLGRDKRNEVLAALYM--VRSDVSLSVRQAALHVWKTIVANTPKTLKEIM---PVLMNTLISSLASSS 1898 (2058)
Q Consensus 1824 ~~~e~~~~~l~~~Lg~~~~~~vL~~L~~--~~~D~~~~VR~aA~~~l~~lv~~~~~~l~~~l---~~L~~~l~~~L~~~~ 1898 (2058)
..... + .+....++.-+.. ...+....++..+..+++.++...|....+.+ |.+.+.+.+...+++
T Consensus 785 ~~~~~--------~-~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~ 855 (876)
T d1qgra_ 785 PDVML--------V-QPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKT 855 (876)
T ss_dssp GGGGG--------S-GGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSC
T ss_pred hhHHH--------H-HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCC
Confidence 00000 0 0111111111111 12345677888889999999988776655444 677777777889999
Q ss_pred HHHHHHHHHHHHHHHH
Q 000143 1899 SERRQVAGRALGELVR 1914 (2058)
Q Consensus 1899 ~~~R~~A~~~Lg~L~~ 1914 (2058)
...|..|..+.-.+-+
T Consensus 856 ~~~~~~a~~~~~~~~~ 871 (876)
T d1qgra_ 856 NKAKTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888776655433
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=5.7e-15 Score=186.92 Aligned_cols=382 Identities=13% Similarity=0.150 Sum_probs=267.9
Q ss_pred HhHHHHhcCCCHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHHHHHhhhhhC---
Q 000143 1133 SGLFKALSHSNYNVRLAAAEALATALDEYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALALHSAADVLR--- 1209 (2058)
Q Consensus 1133 ~~ll~~l~~~~~~vR~aaa~aLa~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~al~~l~~~~~--- 1209 (2058)
-.+++.+.++|..+|+.|.+.|-.+.+..|. +++..|...+.. . +.+...|..++..|++......
T Consensus 3 ~~il~~~~s~d~~~r~~A~~~L~~~~~~~~~---~~~~~l~~il~~---~-----~~~~~~R~~A~i~lk~~l~~~~~~~ 71 (458)
T d1ibrb_ 3 ITILEKTVSPDRLELEAAQKFLERAAVENLP---TFLVELSRVLAN---P-----GNSQVARVAAGLQIKNSLTSKDPDI 71 (458)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHC---T-----TSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHHHhcCch---HHHHHHHHHHhc---C-----CCCHHHHHHHHHHHHHHhhccCchh
Confidence 3567777889999999999999999876532 233333333221 0 2334689988888886653211
Q ss_pred ------------CCChHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH-HhhCccchhhHHHHHHHHhcccCCChhHHHHH
Q 000143 1210 ------------TKDLPVIMTFLISRALADTNADVRGRMLNAGIMII-DKHGRDNVSLLFPIFENYLNKKASDEEKYDLV 1276 (2058)
Q Consensus 1210 ------------~~~~~~l~~~Li~~~L~d~~~~VR~~al~a~~~~i-~~~g~~~~~~Ll~~l~~~L~~~~~~~e~~~~v 1276 (2058)
++....+...++ ..+.+.++.+|. +..+...++ ...+...++++++.+...+..... ...+
T Consensus 72 ~~~~~~~~~~l~~~~~~~i~~~ll-~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~ 145 (458)
T d1ibrb_ 72 KAQYQQRWLAIDANARREVKNYVL-QTLGTETYRPSS-ASQCVAGIACAEIPVNQWPELIPQLVANVTNPNS----TEHM 145 (458)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH-HHTTCCCSSSCS-HHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTC----CHHH
T ss_pred hhHHhhhhccCCHHHHHHHHHHHH-hccCCCcHHHHH-HHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcc----hHHH
Confidence 111123334443 456666655554 444433333 344556788999988777765222 1257
Q ss_pred HHHHHHHHHHHHhHhccC--CcchHHHHHHHHhhhCC--CCHHHHHHHHHhhHhhHhhccc-----chHHHHHHHHHHHh
Q 000143 1277 REGVVIFTGALAKHLAKD--DPKVHAVVDKLLDVLNT--PSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQLM 1347 (2058)
Q Consensus 1277 R~~av~~Lg~La~~l~~~--~p~i~~iv~~Ll~~L~~--~~~~V~~av~~~L~~l~~~~~~-----~~~~~v~~Ll~~L~ 1347 (2058)
+..++.+++.++...... .++...+++.++..+.+ ++..|+..+.+++..+...... .....+...+..+.
T Consensus 146 ~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 225 (458)
T d1ibrb_ 146 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 225 (458)
T ss_dssp HHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHh
Confidence 888999999998766543 35678889999998875 4678998888888877754422 12233444555566
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhCccccch-hc-hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcc-------------
Q 000143 1348 KSDKYGERRGAAFGLAGVVKGFGISSLKK-YG-IAATLREGLADRNSAKRREGALLAFECLCEKLGR------------- 1412 (2058)
Q Consensus 1348 ~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~-~~-il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~------------- 1412 (2058)
.++++.+|..+..++..+++..+....+. .. +.+.+.....+. +...|..++..+..+++....
T Consensus 226 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~ 304 (458)
T d1ibrb_ 226 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 304 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhh
Confidence 67789999999999999998765332211 12 334444445554 788899999888888764210
Q ss_pred --------cchhhHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHH
Q 000143 1413 --------LFEPYVIQMLPLLLVAFS-------DQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQS 1477 (2058)
Q Consensus 1413 --------~~~p~l~~llp~Ll~~l~-------D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~ 1477 (2058)
....+...+.|.+...+. |++..+|.++..+++.++...+.+.++.++|.+.+.+.+++|+.|.+
T Consensus 305 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~~~~~r~a 384 (458)
T d1ibrb_ 305 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDA 384 (458)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHHHHHhcCCCHHHHHH
Confidence 112345566777766654 33457999999999999998888777899999999999999999999
Q ss_pred HHHHHHHHHhhC-hhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc
Q 000143 1478 SVQLLGAMAYCA-PQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN 1532 (2058)
Q Consensus 1478 a~~~Lg~la~~~-p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~ 1532 (2058)
|+.+||.+++++ ++.+.++++.++|.+...++|+++.||.+|+++|+++++.+++
T Consensus 385 al~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~ 440 (458)
T d1ibrb_ 385 AVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 440 (458)
T ss_dssp HHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 999999999865 5567889999999999999999999999999999999998764
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.2e-14 Score=179.95 Aligned_cols=390 Identities=16% Similarity=0.234 Sum_probs=274.1
Q ss_pred hcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCC--CHHHHHHHHHHHHHHHHh-------------
Q 000143 1585 LRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDP--IPEVRSVAARAIGSLIRG------------- 1649 (2058)
Q Consensus 1585 L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~--~~~vR~~a~~aLg~l~~~------------- 1649 (2058)
+-+++.++|..|.+.+..+... + .+..+..+...+.+. ...+|..|+-.+......
T Consensus 9 ~~s~d~~~r~~A~~~L~~~~~~--~-------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~ 79 (458)
T d1ibrb_ 9 TVSPDRLELEAAQKFLERAAVE--N-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 79 (458)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHhc--C-------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhh
Confidence 3456788999999888887652 2 223445555555443 467888887776655432
Q ss_pred --hcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch-hHHHHhhHHHHHhhccC--ChhHHHHHHHHHHHhH
Q 000143 1650 --MGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT-VYFEHILPDIIRNCSHQ--RASVRDGYLTLFKYLP 1724 (2058)
Q Consensus 1650 --lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~-~~l~~llp~Ll~~l~~~--~~~vR~~al~~l~~la 1724 (2058)
++++....+.+.+++.+.++. . .+..++.+++.++....+ ....++++.+...+.+. ++.++.+++.+++.+.
T Consensus 80 ~~l~~~~~~~i~~~ll~~~~~~~-~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 157 (458)
T d1ibrb_ 80 LAIDANARREVKNYVLQTLGTET-Y-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 157 (458)
T ss_dssp HTSCHHHHHHHHHHHHHHTTCCC-S-SSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccCCCc-H-HHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 112223456666777776543 3 355667788777766443 35577888888887664 6788999999999988
Q ss_pred HHhch-hHHHhHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHhccc-----chhchHHhHhhhcCCCCHHHHHHHH
Q 000143 1725 RSLGV-QFQNYLQQVLPAILDGLAD--ENESVRDAALGAGHVLVEHYATT-----SLPLLLPAVEDGIFNDNWRIRQSSV 1796 (2058)
Q Consensus 1725 ~~~g~-~f~pyl~~ilp~Ll~~L~d--~~~~VR~~a~~al~~lv~~~~~~-----~l~~llp~L~~~l~d~~~~vR~sav 1796 (2058)
...+. .+.++...+++.+...+.+ .+..+|..+++++..++...... ....+.+.+...+.++++.+|..++
T Consensus 158 ~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 237 (458)
T d1ibrb_ 158 QDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAAL 237 (458)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred hhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHH
Confidence 77653 5567889999999999875 45789999999888776433221 1233667777778889999999999
Q ss_pred HHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh
Q 000143 1797 ELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP 1876 (2058)
Q Consensus 1797 ~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~ 1876 (2058)
+.++.++........+ ...+.+...+.....+....+|..+...|..++....
T Consensus 238 ~~l~~i~~~~~~~~~~---------------------------~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~ 290 (458)
T d1ibrb_ 238 QNLVKIMSLYYQYMET---------------------------YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEM 290 (458)
T ss_dssp HHHHHHHHHCGGGCTT---------------------------TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHH---------------------------HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999886432111000 0000011112223445667788888888877653211
Q ss_pred ---------------------hhHHHhHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhCcchhhchHHHH
Q 000143 1877 ---------------------KTLKEIMPVLMNTLISSLA-------SSSSERRQVAGRALGELVRKLGERVLPSIIPIL 1928 (2058)
Q Consensus 1877 ---------------------~~l~~~l~~L~~~l~~~L~-------~~~~~~R~~A~~~Lg~L~~~lg~~~l~~llp~L 1928 (2058)
......++.+.+.+...+. +.++.+|..|..+++.++...|+..++.++|.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~i 370 (458)
T d1ibrb_ 291 DLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFI 370 (458)
T ss_dssp HHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHHH
Confidence 1233455666666655543 335578999999999999999988999999999
Q ss_pred hhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHHhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChhh-HHHHHHH
Q 000143 1929 SRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFMDELIPTIRTALCDSILEVRESAGLAFSTLFKSAGMQA-IDEIVPT 2007 (2058)
Q Consensus 1929 ~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l~~~~g~~~-~~~ilp~ 2007 (2058)
.+.++++++.+|.+++.+|+.++..+.++.+.+|++.++|.+...+.|+++.||.+|+.++|.+.+..+... .++++|.
T Consensus 371 ~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ 450 (458)
T d1ibrb_ 371 KEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAP 450 (458)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHH
Confidence 999999999999999999999887776777788999999999999999999999999999999998876432 2455666
Q ss_pred HHHhc
Q 000143 2008 LLHAL 2012 (2058)
Q Consensus 2008 Ll~~L 2012 (2058)
++..|
T Consensus 451 ll~~l 455 (458)
T d1ibrb_ 451 LLQCL 455 (458)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=3.1e-10 Score=157.54 Aligned_cols=653 Identities=12% Similarity=0.097 Sum_probs=366.0
Q ss_pred HHHHHHHhhhcCCChhHHHHHHHhhhcCCccccCCCCchhhhhhHhhhhcCCCchHHHHHHHH--------HHhhcCC--
Q 000143 1057 NEVASALHGVYTKDVHVRMACLNAVKCIPAVSTRSLPENIEVSTSLWIAVHDPEKSVAEAAED--------IWDRYGY-- 1126 (2058)
Q Consensus 1057 ~~l~~ll~~l~~~~~~vR~~al~~L~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~~~r~~a~~--------~w~~~~~-- 1126 (2058)
+.+.++|.+.++| +.|+.|++.|++.. . . |.+...+-.+. ...+.+..+|.+|.. .|+....
T Consensus 5 ~~l~~ll~~s~~~--~~~k~Ae~~L~~~~-~-~---p~f~~~L~~i~-~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~ 76 (959)
T d1wa5c_ 5 ETVAKFLAESVIA--STAKTSERNLRQLE-T-Q---DGFGLTLLHVI-ASTNLPLSTRLAGALFFKNFIKRKWVDENGNH 76 (959)
T ss_dssp HHHHHHHHHTTSG--GGHHHHHHHHHHHH-T-S---TTHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCB
T ss_pred HHHHHHHHHCCCh--HHHHHHHHHHHHHH-c-C---CCHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHHhcccccccC
Confidence 4566777776544 57999999998874 1 1 22333333332 223345678887653 5754221
Q ss_pred CCC----CCH-HhHHHHhcCCCHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhhcCCCCCCCCCCchhhHHHHHH
Q 000143 1127 DFG----TDY-SGLFKALSHSNYNVRLAAAEALATALD-EYPDSIQGSLSTLFSLYIRDIGLGGDNVDAGWLGRQGIALA 1200 (2058)
Q Consensus 1127 ~~~----~~~-~~ll~~l~~~~~~vR~aaa~aLa~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~R~~~~~a 1200 (2058)
..+ ..+ ..+++.+.+++..+|...+.+++.++. .+|+.|+++++.+.+.+. +++...+.+++.+
T Consensus 77 ~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~Wp~ll~~l~~~l~----------s~~~~~~~~~L~~ 146 (959)
T d1wa5c_ 77 LLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWPTLLSDLASRLS----------NDDMVTNKGVLTV 146 (959)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHTTCC----------SSCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccccHHHHHHHHHHhC----------CCCHHHHHHHHHH
Confidence 122 224 677888888999999999999999986 468899998888886531 2345678899999
Q ss_pred HHHhhhhhCCCC----h--------HHHHHHHH---H---hhccC-CC-HHHHHH---HHHHHHHHHHhh-C-------c
Q 000143 1201 LHSAADVLRTKD----L--------PVIMTFLI---S---RALAD-TN-ADVRGR---MLNAGIMIIDKH-G-------R 1249 (2058)
Q Consensus 1201 l~~l~~~~~~~~----~--------~~l~~~Li---~---~~L~d-~~-~~VR~~---al~a~~~~i~~~-g-------~ 1249 (2058)
+..++..+.... . +.+...+. . ..+.. .. ...-.. .+.....++... . .
T Consensus 147 l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (959)
T d1wa5c_ 147 AHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE 226 (959)
T ss_dssp HHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred HHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 999887654321 0 11111111 1 11111 11 111111 111122221111 0 1
Q ss_pred cchhhHHHHHHHHhcccCCC---------hhHHHHHHHHHHHHHHHHHhHhccC-CcchHHHHHHHHhhhC----C-CCH
Q 000143 1250 DNVSLLFPIFENYLNKKASD---------EEKYDLVREGVVIFTGALAKHLAKD-DPKVHAVVDKLLDVLN----T-PSE 1314 (2058)
Q Consensus 1250 ~~~~~Ll~~l~~~L~~~~~~---------~e~~~~vR~~av~~Lg~La~~l~~~-~p~i~~iv~~Ll~~L~----~-~~~ 1314 (2058)
+++..++..|...+...... ......+|...+..+..+.+..... .|+++.++..+...+. . ..+
T Consensus 227 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 306 (959)
T d1wa5c_ 227 DNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYD 306 (959)
T ss_dssp HTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSH
T ss_pred HHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 23455566666666542110 0111235666666666666533221 2344444444443331 1 123
Q ss_pred HHHHHHHHhhHhhHhhc--------ccchHHHHHHHHHHH-----------------------hcCCCHHHHHHHHHHHH
Q 000143 1315 AVQRAVSSCLSPLMQSM--------QDEAPTLVSRLLDQL-----------------------MKSDKYGERRGAAFGLA 1363 (2058)
Q Consensus 1315 ~V~~av~~~L~~l~~~~--------~~~~~~~v~~Ll~~L-----------------------~~~~~~~vR~~Aa~~L~ 1363 (2058)
.+...+...+..++... .+.....+..++-.+ ..++.+..|.+|...+.
T Consensus 307 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~l~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~ 386 (959)
T d1wa5c_ 307 ILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLK 386 (959)
T ss_dssp HHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHH
Confidence 33222222222222211 011122222222111 11223456778888888
Q ss_pred HHHhhhCccccchhchHHHHHHHHh-----CCCCHHHHHHHHHHHHHHHHHhc------------ccchhhHHHHHHHHH
Q 000143 1364 GVVKGFGISSLKKYGIAATLREGLA-----DRNSAKRREGALLAFECLCEKLG------------RLFEPYVIQMLPLLL 1426 (2058)
Q Consensus 1364 ~l~~~~g~~~l~~~~il~~L~~~l~-----~~~~~~~R~~al~al~~L~~~lg------------~~~~p~l~~llp~Ll 1426 (2058)
.+....+..... .+++.+.+.+. ...+|..|++++.+++.+....+ ..+.+++...+...+
T Consensus 387 ~l~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l 464 (959)
T d1wa5c_ 387 ELKEKNEVLVTN--IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL 464 (959)
T ss_dssp HHHHHCHHHHHH--HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH
T ss_pred HHHHhccccchH--HHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHH
Confidence 887766533321 34444444332 23489999999999998874321 124444545444445
Q ss_pred HHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhC-----------hhhHhh
Q 000143 1427 VAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCA-----------PQQLSQ 1495 (2058)
Q Consensus 1427 ~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~-----------p~~l~~ 1495 (2058)
....++.+.+|..+..+++.+.....++....+++.+++.+.+++..+|..|+.++..++... .+.+.+
T Consensus 465 ~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p 544 (959)
T d1wa5c_ 465 TSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (959)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred ccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHh
Confidence 555667789999999999998887777777899999999999999999999999999998642 345788
Q ss_pred hhhhHHHHHHHHhcCCCHHH-----HHHHHHHHHHHHhhcCc---hhHHhHHHHHHhccCCCChhHHHHHHHHHhccccc
Q 000143 1496 CLPKIVPKLTEVLTDTHPKV-----QSAGQTALQQVGSVIKN---PEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVN 1567 (2058)
Q Consensus 1496 ~L~~Iip~L~~~L~D~~~~V-----R~aA~~aL~~l~~~~~~---~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~ 1567 (2058)
+++.++..+...+.+..... ...+..++..+.+..++ |+...+++.+...
T Consensus 545 ~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~---------------------- 602 (959)
T d1wa5c_ 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEI---------------------- 602 (959)
T ss_dssp THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHH----------------------
T ss_pred hHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 99999999888886654322 23466777777665543 3333333333221
Q ss_pred cCChhhHhhHHHHHHHhhcC-CCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHH
Q 000143 1568 TVDAPSLALLVPIVHRGLRE-RSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSL 1646 (2058)
Q Consensus 1568 ~~~~~~l~~llp~L~~~L~d-~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l 1646 (2058)
+....++ .+........++++.+... ..+.....+.+.++|.+...+..........+..-++.+
T Consensus 603 -------------~~~~~~~~~~~~~~~~~~e~l~~l~~~-~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~ 668 (959)
T d1wa5c_ 603 -------------VTIMAKNPSNPRFTHYTFESIGAILNY-TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (959)
T ss_dssp -------------HHHHTTSCCCHHHHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred -------------HHHHhcCccchHHHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 1111121 2344555566677777664 344556677788889888888776666777778877777
Q ss_pred HHhhcc--cCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhH---HHHhhHHHHHhhccCChhHHHHHHHHHH
Q 000143 1647 IRGMGE--ENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVY---FEHILPDIIRNCSHQRASVRDGYLTLFK 1721 (2058)
Q Consensus 1647 ~~~lg~--~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~---l~~llp~Ll~~l~~~~~~vR~~al~~l~ 1721 (2058)
....+. +.+.++++.++.....+... ........+..++.. |.+. ...++..+...+... ..+..++..++
T Consensus 669 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~ll~ 744 (959)
T d1wa5c_ 669 VEQSATIPESIKPLAQPLLAPNVWELKG-NIPAVTRLLKSFIKT-DSSIFPDLVPVLGIFQRLIASK--AYEVHGFDLLE 744 (959)
T ss_dssp HHHCSSCCTTTGGGHHHHTSGGGGCCTT-THHHHHHHHHHHHHH-HGGGCSCSHHHHHHHHHHHTCT--TTHHHHHHHHH
T ss_pred HHhCCCccHHHHHHHHHHhhHHHHHHhh-hHHHHHHHHHHHHHh-CHHhhcchHHHHHHHHHHHCCC--cchHHHHHHHH
Confidence 765442 23445555555433322222 122233333333322 2221 133444444444333 23456777888
Q ss_pred HhHHHhch-hHHHhHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHhc
Q 000143 1722 YLPRSLGV-QFQNYLQQVLPAILDGLADE-NESVRDAALGAGHVLVEHYA 1769 (2058)
Q Consensus 1722 ~la~~~g~-~f~pyl~~ilp~Ll~~L~d~-~~~VR~~a~~al~~lv~~~~ 1769 (2058)
.+...++. .+.+|++.++..+++.+... .+.+.......+..++..+.
T Consensus 745 ~ii~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 794 (959)
T d1wa5c_ 745 HIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLG 794 (959)
T ss_dssp HHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCchhhhHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC
Confidence 88888865 46789999999999998754 35555555555555544333
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=9.6e-11 Score=151.23 Aligned_cols=462 Identities=11% Similarity=0.071 Sum_probs=295.0
Q ss_pred HHHHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc-----chHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc-cc
Q 000143 1300 AVVDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD-----EAPTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI-SS 1373 (2058)
Q Consensus 1300 ~iv~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~-----~~~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~-~~ 1373 (2058)
..+|.|+..|++.+..++..++.++..+...... ...+.++.++..|...++...++.|+.+|..+...... ..
T Consensus 17 ~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (529)
T d1jdha_ 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 3478888899999999999898888887643211 12467888888887777888999999999888653211 11
Q ss_pred cchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhh-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhh
Q 000143 1374 LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPY-VIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLS 1452 (2058)
Q Consensus 1374 l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~-l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~ 1452 (2058)
+-....+|.|...+.+. ++..+..|+.++..++......-... -...+|.++..++++++.++..+..++..++..-.
T Consensus 97 i~~~g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~ 175 (529)
T d1jdha_ 97 IFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175 (529)
T ss_dssp HHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhh
Confidence 22336688888888876 88999999999999887544211111 23478899999999999999999999998875433
Q ss_pred hhh---H-HhHHHHHHHhccC-CChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000143 1453 AQG---V-KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVG 1527 (2058)
Q Consensus 1453 ~~~---v-~~llp~Ll~~L~~-~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~ 1527 (2058)
... . ...++.+...+.. .....+..++.++..++........-.-...++.+...+.++++.++..++.++..+.
T Consensus 176 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls 255 (529)
T d1jdha_ 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 255 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcc
Confidence 221 1 3457777777764 4567888888889888754322211111367888999999999999999999988876
Q ss_pred hhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhh
Q 000143 1528 SVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLV 1607 (2058)
Q Consensus 1528 ~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l 1607 (2058)
....... .....+|.+.+.+.+.+..++..++.++++++.
T Consensus 256 ~~~~~~~--------------------------------------~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~-- 295 (529)
T d1jdha_ 256 DAATKQE--------------------------------------GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC-- 295 (529)
T ss_dssp TTCTTCS--------------------------------------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--
T ss_pred ccccchh--------------------------------------hhhhcchhhhhhcccccHHHHHHHHHHHHhhcc--
Confidence 4322110 011234555555666666777777777777764
Q ss_pred CCCCchhh-hHhhhhHHHHHhhC--CCCHHHHHHHHHHHHHHHHhhccc-------CccchHHHHHhhcccCCChHHHhh
Q 000143 1608 TEPKDMIP-YIGLLLPEVKKVLV--DPIPEVRSVAARAIGSLIRGMGEE-------NFPDLVSWLLDALKSDNSNVERSG 1677 (2058)
Q Consensus 1608 ~~~~~l~p-yl~~ll~~L~~~l~--d~~~~vR~~a~~aLg~l~~~lg~~-------~~~~llp~L~~~L~~d~~~~~R~~ 1677 (2058)
+++..... .-...++.+...+. .+.++++..+..++..++...... .....++.++..+..+........
T Consensus 296 ~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~ 375 (529)
T d1jdha_ 296 NNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375 (529)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHH
T ss_pred chhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHH
Confidence 12111000 11234555555542 456788888999998876432111 123467778888876666656666
Q ss_pred HHHHHHHHHHHhchh-HH--HHhhHHHHHhhccC----------------------ChhHHHHHHHHHHHhHHHhchhHH
Q 000143 1678 AAQGLSEVLAALGTV-YF--EHILPDIIRNCSHQ----------------------RASVRDGYLTLFKYLPRSLGVQFQ 1732 (2058)
Q Consensus 1678 aa~~L~~i~~~~g~~-~l--~~llp~Ll~~l~~~----------------------~~~vR~~al~~l~~la~~~g~~f~ 1732 (2058)
+...+..+...-... .+ ...++.+.+.+.+. ...+.+.++.++..++........
T Consensus 376 ~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~ 455 (529)
T d1jdha_ 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIV 455 (529)
T ss_dssp HHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHH
Confidence 666666554321111 11 22344444443322 134445555555555432221110
Q ss_pred HhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc-cch--hchHHhHhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1733 NYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYAT-TSL--PLLLPAVEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1733 pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~-~~l--~~llp~L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
---...++++.+.+.++++++|..++.++..+...-.. ..+ ...++.|.+.+.+.++.+|..+...+..+
T Consensus 456 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 456 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 01123678999999999999999999999876422110 111 12678889999999999999988887654
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.3e-10 Score=147.61 Aligned_cols=467 Identities=13% Similarity=0.079 Sum_probs=279.7
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhH-hhhhhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhcCchhHH
Q 000143 1459 VLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQL-SQCLPKIVPKLTEVLTD-THPKVQSAGQTALQQVGSVIKNPEIA 1536 (2058)
Q Consensus 1459 llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l-~~~L~~Iip~L~~~L~D-~~~~VR~aA~~aL~~l~~~~~~~~i~ 1536 (2058)
.+|.|.+.+.+++..+|..|+..++.++...+... .-.-+.+++.+...|.+ .++.++..|+.+|..++.. ++.
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~---~~~- 93 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH---REG- 93 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS---HHH-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC---chh-
Confidence 35555555555555556566666666553322111 01124678888888865 5689999999999888642 111
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh-
Q 000143 1537 SLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP- 1615 (2058)
Q Consensus 1537 ~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p- 1615 (2058)
+. .+. -...+|.+.+.+++.+++++..|+.++.+++.. .+ ....
T Consensus 94 -----------------~~---~i~------------~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~--~~-~~~~~ 138 (529)
T d1jdha_ 94 -----------------LL---AIF------------KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH--QE-GAKMA 138 (529)
T ss_dssp -----------------HH---HHH------------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--CT-THHHH
T ss_pred -----------------HH---HHH------------HCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcc--cc-hhhhH
Confidence 00 000 011456677777888888999999999998863 21 1111
Q ss_pred -hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhc
Q 000143 1616 -YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALG 1690 (2058)
Q Consensus 1616 -yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g 1690 (2058)
.....+|.|..++.+++++++..++.+++.++..-.+. .-...++.++..+...+....+..++..+..+...-.
T Consensus 139 ~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~ 218 (529)
T d1jdha_ 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 218 (529)
T ss_dssp HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT
T ss_pred HHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcccc
Confidence 12357899999999999999999999999997532211 1234677788888766666677777777766542111
Q ss_pred hh-HH--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Q 000143 1691 TV-YF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEH 1767 (2058)
Q Consensus 1691 ~~-~l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~ 1767 (2058)
.. .+ ...++.+...+.+++..++..++.++..+........ ....++|.+++.+.++++.++..++.++..+...
T Consensus 219 ~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~--~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~ 296 (529)
T d1jdha_ 219 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred ccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccchh--hhhhcchhhhhhcccccHHHHHHHHHHHHhhccc
Confidence 11 11 3467888888889999999999999888765443321 2356889999999999999999999998876532
Q ss_pred hccc--ch--hchHHhHhhhc--CCCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhh
Q 000143 1768 YATT--SL--PLLLPAVEDGI--FNDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDK 1841 (2058)
Q Consensus 1768 ~~~~--~l--~~llp~L~~~l--~d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~ 1841 (2058)
-... .+ ...++.+...+ ..++..++..++..++.+... .. + .+.....+...
T Consensus 297 ~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~-------------~~-~---~~~~~~~i~~~----- 354 (529)
T d1jdha_ 297 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR-------------HQ-E---AEMAQNAVRLH----- 354 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS-------------ST-T---HHHHHHHHHHT-----
T ss_pred hhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccch-------------hh-c---chhhhhhHHhc-----
Confidence 1110 00 11344444444 234567777777777766310 00 0 11111111110
Q ss_pred HHHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHhhChh--hHH--HhHHHHHHHHHHHhc----------------C--CC
Q 000143 1842 RNEVLAALYMVR-SDVSLSVRQAALHVWKTIVANTPK--TLK--EIMPVLMNTLISSLA----------------S--SS 1898 (2058)
Q Consensus 1842 ~~~vL~~L~~~~-~D~~~~VR~aA~~~l~~lv~~~~~--~l~--~~l~~L~~~l~~~L~----------------~--~~ 1898 (2058)
..++.+.... .+....+..++..++..+..+... .+. ..++.+++.+..... + ..
T Consensus 355 --~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (529)
T d1jdha_ 355 --YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432 (529)
T ss_dssp --TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCH
T ss_pred --ccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccch
Confidence 1122333332 233455666777777766543211 111 123344443322110 0 11
Q ss_pred HHHHHHHHHHHHHHHHHhCcc-h--hhchHHHHhhhcCCCChhHHHHHHHHHHHHHHhhChhhhHhHH-hhHHHHHHHHh
Q 000143 1899 SERRQVAGRALGELVRKLGER-V--LPSIIPILSRGLKDPSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTAL 1974 (2058)
Q Consensus 1899 ~~~R~~A~~~Lg~L~~~lg~~-~--l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~~~~~~~l~~~~-~~ll~~L~~~L 1974 (2058)
.+.+..+..+++.++...... . -...+|.|.+.+.++++++|..++.+|..+... ++.-.... ...++.|.+++
T Consensus 433 ~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~~~~L~~Ll 510 (529)
T d1jdha_ 433 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELL 510 (529)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTCHHHHHHGG
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHCCCHHHHHHHh
Confidence 344455555555554321111 1 235678889999888999999999999876533 22111111 34678899999
Q ss_pred cCCCHHHHHHHHHHHHHH
Q 000143 1975 CDSILEVRESAGLAFSTL 1992 (2058)
Q Consensus 1975 ~D~d~~VR~~Aa~a~~~l 1992 (2058)
.++++.||+.|+.++..+
T Consensus 511 ~s~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 511 HSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp GCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998875
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.36 E-value=1.5e-10 Score=144.88 Aligned_cols=375 Identities=14% Similarity=0.124 Sum_probs=263.1
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hhH--HhHHHHHHHhccC-CChHHHHHHHHHHHHHHhhChhhHhhh
Q 000143 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSA---QGV--KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQLSQC 1496 (2058)
Q Consensus 1423 p~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~v--~~llp~Ll~~L~~-~~~~~R~~a~~~Lg~la~~~p~~l~~~ 1496 (2058)
..+++.+..+++.++..|..++..+...... +.+ ..++|.+++.+.+ +++.+|..++.+|..++.+.++.....
T Consensus 16 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i 95 (434)
T d1q1sc_ 16 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 95 (434)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHh
Confidence 3455678888999999999999988654332 222 3589999999975 467899999999999997765432221
Q ss_pred -hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhccCCCChh------HHHHHHHHHhccc
Q 000143 1497 -LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDH------TKYSLDILLQTTF 1565 (2058)
Q Consensus 1497 -L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~~------vr~al~~L~~~~f 1565 (2058)
-..++|.+...++++++.++..|+++|+.++..-.+ ..+ ...++.++..+..+... .+.+...+.....
T Consensus 96 ~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 175 (434)
T d1q1sc_ 96 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 175 (434)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred hhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhh
Confidence 246899999999999999999999999999864221 111 35667777777655432 2223333332111
Q ss_pred -c-ccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhh--hHhhhhHHHHHhhCCCCHHHHHHHHH
Q 000143 1566 -V-NTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIP--YIGLLLPEVKKVLVDPIPEVRSVAAR 1641 (2058)
Q Consensus 1566 -~-~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~p--yl~~ll~~L~~~l~d~~~~vR~~a~~ 1641 (2058)
. ..........++|.+...+.+.+++++..++.++.+++.. . ....+ +...+++.+...+.+++++++..+..
T Consensus 176 ~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~--~-~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~ 252 (434)
T d1q1sc_ 176 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG--P-NERIEMVVKKGVVPQLVKLLGATELPIVTPALR 252 (434)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS--C-HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred cccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh--h-hhhHHHHhhcccchhcccccccchhhhhhchhh
Confidence 1 1112223456788899999999999999999999988752 2 22222 23468899999999999999999999
Q ss_pred HHHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh--HH--HHhhHHHHHhhccCChhHH
Q 000143 1642 AIGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YF--EHILPDIIRNCSHQRASVR 1713 (2058)
Q Consensus 1642 aLg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~--~l--~~llp~Ll~~l~~~~~~vR 1713 (2058)
+++.++....+. .-..+++.+...+.+ .+..+|..++.+++.++...... .+ ..++|.++..+.++++.+|
T Consensus 253 ~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~ 331 (434)
T d1q1sc_ 253 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 331 (434)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHH
T ss_pred hhhhHHhhhhHHHHHHHhccccchHHHhhcc-cchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHH
Confidence 999887532211 123566777777764 55568889999998886532211 11 3578889999999999999
Q ss_pred HHHHHHHHHhHHHhchhHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcccc--------hh--chHHhHh
Q 000143 1714 DGYLTLFKYLPRSLGVQFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYATTS--------LP--LLLPAVE 1781 (2058)
Q Consensus 1714 ~~al~~l~~la~~~g~~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~~--------l~--~llp~L~ 1781 (2058)
..++.+++.+......+...++ ..++++++..+...+++++..+++++..++....... +. ..++.|.
T Consensus 332 ~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~ 411 (434)
T d1q1sc_ 332 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIE 411 (434)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHH
Confidence 9999999999887665443333 2368999999999999999999999988875432110 11 1355566
Q ss_pred hhcCCCCHHHHHHHHHHHHH
Q 000143 1782 DGIFNDNWRIRQSSVELLGD 1801 (2058)
Q Consensus 1782 ~~l~d~~~~vR~sav~ll~~ 1801 (2058)
....+++..++..|..++..
T Consensus 412 ~L~~~~n~~i~~~a~~il~~ 431 (434)
T d1q1sc_ 412 ALQRHENESVYKASLNLIEK 431 (434)
T ss_dssp HHHTCSSHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHH
Confidence 66677888888888777754
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.33 E-value=8.3e-08 Score=132.56 Aligned_cols=652 Identities=10% Similarity=0.085 Sum_probs=356.9
Q ss_pred HHHHHHHHHHHHHhHhccCCcchHHHHHHHHhhhCCC--CHHHHHHHHHhhHhhHhhc----------ccchHHHH-HHH
Q 000143 1276 VREGVVIFTGALAKHLAKDDPKVHAVVDKLLDVLNTP--SEAVQRAVSSCLSPLMQSM----------QDEAPTLV-SRL 1342 (2058)
Q Consensus 1276 vR~~av~~Lg~La~~l~~~~p~i~~iv~~Ll~~L~~~--~~~V~~av~~~L~~l~~~~----------~~~~~~~v-~~L 1342 (2058)
.|+.|=..|..+.. .| .....|++.+.++ +..+|..++-.+...+... .++.+..+ ..+
T Consensus 19 ~~k~Ae~~L~~~~~-----~p---~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~~l 90 (959)
T d1wa5c_ 19 TAKTSERNLRQLET-----QD---GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEI 90 (959)
T ss_dssp GHHHHHHHHHHHHT-----ST---THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CC---CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHH
Confidence 45556555555432 22 2333344444333 4678887777776666532 22334444 345
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccc---------
Q 000143 1343 LDQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRL--------- 1413 (2058)
Q Consensus 1343 l~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~--------- 1413 (2058)
++.+.+ .+..+|...+.+++.++..-++..++ ++++.+.+.+++. ++..+.+++.++..+++.....
T Consensus 91 l~~l~~-~~~~ir~~l~~~i~~I~~~d~p~~Wp--~ll~~l~~~l~s~-~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~ 166 (959)
T d1wa5c_ 91 VPLMIS-LPNNLQVQIGEAISSIADSDFPDRWP--TLLSDLASRLSND-DMVTNKGVLTVAHSIFKRWRPLFRSDELFLE 166 (959)
T ss_dssp HHHHHH-SCHHHHHHHHHHHHHHHHHHSTTTCT--THHHHHHTTCCSS-CTTHHHHHHHHHHHHHGGGTTSCCCHHHHHH
T ss_pred HHHHhC-CcHHHHHHHHHHHHHHHHHhCccccH--HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHhhhcchhHHhH
Confidence 555544 46789999999999999887777664 8999999998876 7888999999999998754311
Q ss_pred chhhHHHHHHH-------HHHHcCCCC--HHHHHHHHHHHHHHHHhh---h----hh----hHHhHHHHHHHhccC----
Q 000143 1414 FEPYVIQMLPL-------LLVAFSDQV--VAVREAAECAARAMMSQL---S----AQ----GVKLVLPSLLKGLED---- 1469 (2058)
Q Consensus 1414 ~~p~l~~llp~-------Ll~~l~D~~--~~VR~aA~~al~~l~~~l---~----~~----~v~~llp~Ll~~L~~---- 1469 (2058)
+...+..+.+. +...+.... ...-......+..+...+ . +. .+..++..+...+..
T Consensus 167 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 246 (959)
T d1wa5c_ 167 IKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPL 246 (959)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhccccc
Confidence 11122222222 222222211 111111111222111111 0 01 112222222222211
Q ss_pred ---------C--ChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhhcC--
Q 000143 1470 ---------K--AWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLT-----DTHPKVQSAGQTALQQVGSVIK-- 1531 (2058)
Q Consensus 1470 ---------~--~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~-----D~~~~VR~aA~~aL~~l~~~~~-- 1531 (2058)
. .+..|...+..+..+....++.+.++++.+++.+.+.+. .....+...++..+..++....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 326 (959)
T d1wa5c_ 247 LEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYF 326 (959)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHH
T ss_pred ccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHH
Confidence 0 135677788888888888888888888888887766553 2235556666665555544211
Q ss_pred -----chhHHhHHHHHH-hccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhc-CCCHHHHHHHHHHHHHHH
Q 000143 1532 -----NPEIASLVPTLL-MGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR-ERSAETKKKAAQIVGNMC 1604 (2058)
Q Consensus 1532 -----~~~i~~lvp~Ll-~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~-d~s~~vr~~A~~~l~~L~ 1604 (2058)
.+++..++..++ ..+.-..+. .....+.| ...+..-.. +..+..|..+...+..++
T Consensus 327 ~~~~~~~~l~~i~~~li~~~~~~~~~d------------~e~~~~dp-----~~~~~~~~~~~~~~~~r~~a~~ll~~l~ 389 (959)
T d1wa5c_ 327 EIFNNESAMNNITEQIILPNVTLREED------------VELFEDDP-----IEYIRRDLEGSDTDTRRRACTDFLKELK 389 (959)
T ss_dssp GGGCSHHHHHHHHHHTHHHHHSCCGGG------------TTTTTTCH-----HHHHHHHHHC----CHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhcCCHHH------------HHHHhcch-----HHHHHHHhhhcccccHHHHHHHHHHHHH
Confidence 122222222111 111100000 00000001 001111111 123346777777788777
Q ss_pred hhhCCCCchhhhHhhhhHHHHHh----hC--CCCHHHHHHHHHHHHHHHHhhccc--------CccchHHHHHhhc----
Q 000143 1605 SLVTEPKDMIPYIGLLLPEVKKV----LV--DPIPEVRSVAARAIGSLIRGMGEE--------NFPDLVSWLLDAL---- 1666 (2058)
Q Consensus 1605 ~~l~~~~~l~pyl~~ll~~L~~~----l~--d~~~~vR~~a~~aLg~l~~~lg~~--------~~~~llp~L~~~L---- 1666 (2058)
...+ +.. .+.+++.+... .. +.+|..|+.+..++|++....+-. ...++.+.+...+
T Consensus 390 ~~~~--~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l 464 (959)
T d1wa5c_ 390 EKNE--VLV---TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDL 464 (959)
T ss_dssp HHCH--HHH---HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHH
T ss_pred Hhcc--ccc---hHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHHHHHH
Confidence 6422 121 22223322222 22 467999999999999987532211 2233444443332
Q ss_pred c--cCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccCChhHHHHHHHHHHHhHHHhc-----------hhHHH
Q 000143 1667 K--SDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQRASVRDGYLTLFKYLPRSLG-----------VQFQN 1733 (2058)
Q Consensus 1667 ~--~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~~g-----------~~f~p 1733 (2058)
. .+.....|..++..++.+......+.+..+++.++..+.+++..||..++.++..+..... ..+.|
T Consensus 465 ~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p 544 (959)
T d1wa5c_ 465 TSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN 544 (959)
T ss_dssp HCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred ccCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHh
Confidence 2 2344567888888888888777777888999999999999999999999999998876432 35778
Q ss_pred hHHHHHHHHHHhccCCCHH-----HHHHHHHHHHHHHHHhcccch---hchHHhHhh----hcCC-CCHHHHHHHHHHHH
Q 000143 1734 YLQQVLPAILDGLADENES-----VRDAALGAGHVLVEHYATTSL---PLLLPAVED----GIFN-DNWRIRQSSVELLG 1800 (2058)
Q Consensus 1734 yl~~ilp~Ll~~L~d~~~~-----VR~~a~~al~~lv~~~~~~~l---~~llp~L~~----~l~d-~~~~vR~sav~ll~ 1800 (2058)
|++.++..++..+.+.... +....+.++..++..++.... +.+++.+.. ...+ .+...+....+.++
T Consensus 545 ~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~ 624 (959)
T d1wa5c_ 545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIG 624 (959)
T ss_dssp THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 9999999998888654322 234577888888877765422 223333322 2222 23455556666666
Q ss_pred HHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhH----HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhCh
Q 000143 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKR----NEVLAALYMVRSDVSLSVRQAALHVWKTIVANTP 1876 (2058)
Q Consensus 1801 ~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~----~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~ 1876 (2058)
.++.. .|++.. ..+++.+..............+..+|..+..+.+
T Consensus 625 ~l~~~-------------------------------~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 673 (959)
T d1wa5c_ 625 AILNY-------------------------------TQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSA 673 (959)
T ss_dssp HHHHT-------------------------------SCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCS
T ss_pred HHHHh-------------------------------cCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCC
Confidence 65421 111111 1122222222222222344566777777765543
Q ss_pred ---hhHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcch--hhchHHHHhhhcCCCChhHHHHHHHHHHHHH
Q 000143 1877 ---KTLKEIMPVLMNTLISSLASSSSERRQVAGRALGELVRKLGERV--LPSIIPILSRGLKDPSASRRQGVCIGLSEVM 1951 (2058)
Q Consensus 1877 ---~~l~~~l~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~~--l~~llp~L~~~l~d~~~~vR~~a~~aL~eii 1951 (2058)
..+.++++.++... +. ............+..++...++.. ...++..+...+.++. .+..++..++.++
T Consensus 674 ~~~~~~~~l~~~l~~~~---~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~--~~~~~~~ll~~ii 747 (959)
T d1wa5c_ 674 TIPESIKPLAQPLLAPN---VW-ELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKA--YEVHGFDLLEHIM 747 (959)
T ss_dssp SCCTTTGGGHHHHTSGG---GG-CCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTT--THHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhHH---HH-HHhhhHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHHCCCc--chHHHHHHHHHHH
Confidence 33334444333222 11 122223445555655555433322 3456666666665443 2345566678888
Q ss_pred HhhChhhhHhHHhhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhCh
Q 000143 1952 ASAGKSQLLSFMDELIPTIRTALCD-SILEVRESAGLAFSTLFKSAGM 1998 (2058)
Q Consensus 1952 ~~~~~~~l~~~~~~ll~~L~~~L~D-~d~~VR~~Aa~a~~~l~~~~g~ 1998 (2058)
..++.+.+.+|++.++..+.+.+.. ..+.+.......++.++...++
T Consensus 748 ~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (959)
T d1wa5c_ 748 LLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGS 795 (959)
T ss_dssp HHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHCchhhhHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCH
Confidence 8888777888999999999888754 4577777888888888765554
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=8.3e-10 Score=138.06 Aligned_cols=385 Identities=14% Similarity=0.114 Sum_probs=258.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc---cccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccch
Q 000143 1339 VSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI---SSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFE 1415 (2058)
Q Consensus 1339 v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~---~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~ 1415 (2058)
++.+++.+. ++++..+..|+.++..++..... +.+...+++|.|.+.+.+..++.+|..++.++..++..-.....
T Consensus 15 i~~lv~~l~-s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~ 93 (434)
T d1q1sc_ 15 VEDIVKGIN-SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 93 (434)
T ss_dssp HHHHHHHHT-SSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhh
Confidence 445555443 34677777777777766542221 12223468899999987665788899999999988753222111
Q ss_pred hhH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhh--hH--HhHHHHHHHhccCCCh-----HHHHHHHHHHHHH
Q 000143 1416 PYV-IQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQ--GV--KLVLPSLLKGLEDKAW-----RTKQSSVQLLGAM 1485 (2058)
Q Consensus 1416 p~l-~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~--~v--~~llp~Ll~~L~~~~~-----~~R~~a~~~Lg~l 1485 (2058)
..+ ...+|.++..+.++++.+++.|..++..++...+.. .+ ...++.++..+...+. .....++..+..+
T Consensus 94 ~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~ 173 (434)
T d1q1sc_ 94 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 173 (434)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 122 257899999999999999999999999987543321 12 3467777777764432 2223345566666
Q ss_pred HhhChhh-HhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhcc
Q 000143 1486 AYCAPQQ-LSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTT 1564 (2058)
Q Consensus 1486 a~~~p~~-l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~ 1564 (2058)
+...+.. .......++|.+...+.+.++.++..+++++..++..- ++.. + .+.
T Consensus 174 ~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~--~~~~---~------------------~~~--- 227 (434)
T d1q1sc_ 174 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERI---E------------------MVV--- 227 (434)
T ss_dssp TCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHH---H------------------HHH---
T ss_pred hhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhh--hhhH---H------------------HHh---
Confidence 5543322 22345678899999999999999999999999886531 1110 0 000
Q ss_pred ccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh--HhhhhHHHHHhhCCCCHHHHHHHHHH
Q 000143 1565 FVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIPEVRSVAARA 1642 (2058)
Q Consensus 1565 f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py--l~~ll~~L~~~l~d~~~~vR~~a~~a 1642 (2058)
...++|.+...+++.++.++..++.++++++.. ++ ....+ -..+++.+..++.++++++|..++.+
T Consensus 228 ---------~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~--~~-~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~ 295 (434)
T d1q1sc_ 228 ---------KKGVVPQLVKLLGATELPIVTPALRAIGNIVTG--TD-EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT 295 (434)
T ss_dssp ---------TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS--CH-HHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHH
T ss_pred ---------hcccchhcccccccchhhhhhchhhhhhhHHhh--hh-HHHHHHHhccccchHHHhhcccchhhhHHHHHH
Confidence 012456666667777888888888888888752 21 22222 23577888889999999999999999
Q ss_pred HHHHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHH-----HHhhHHHHHhhccCChhHH
Q 000143 1643 IGSLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYF-----EHILPDIIRNCSHQRASVR 1713 (2058)
Q Consensus 1643 Lg~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l-----~~llp~Ll~~l~~~~~~vR 1713 (2058)
++.++....+. .-..++|.+++.+.+ .+..+|..++++++.++.....+.. ..+++.+...+.+.++.++
T Consensus 296 L~~l~~~~~~~~~~i~~~~~i~~li~~l~~-~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~ 374 (434)
T d1q1sc_ 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 374 (434)
T ss_dssp HHHHTTSCHHHHHHHHHTTCHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHH
T ss_pred HhhhccccchhHHHHhhhhhHHHHHHHHhc-cChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence 99997533221 113578888888875 4566899999999998877665533 2357889999999999999
Q ss_pred HHHHHHHHHhHHHhc---h--hHHHhHHH--HHHHHHHhccCCCHHHHHHHHHHHHH
Q 000143 1714 DGYLTLFKYLPRSLG---V--QFQNYLQQ--VLPAILDGLADENESVRDAALGAGHV 1763 (2058)
Q Consensus 1714 ~~al~~l~~la~~~g---~--~f~pyl~~--ilp~Ll~~L~d~~~~VR~~a~~al~~ 1763 (2058)
..++.++..+..... . .+...+.. .++.+.....+++++|+..|...+..
T Consensus 375 ~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~ 431 (434)
T d1q1sc_ 375 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431 (434)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999988876432 1 23333332 35566666678899999888776643
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=2.4e-09 Score=136.86 Aligned_cols=380 Identities=13% Similarity=0.098 Sum_probs=266.1
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh---hh-H-HhHHHHHHHhccC-CChHHHHHHHHHHHHHHhhChhhH
Q 000143 1420 QMLPLLLVAFSDQVVAVREAAECAARAMMSQLSA---QG-V-KLVLPSLLKGLED-KAWRTKQSSVQLLGAMAYCAPQQL 1493 (2058)
Q Consensus 1420 ~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~---~~-v-~~llp~Ll~~L~~-~~~~~R~~a~~~Lg~la~~~p~~l 1493 (2058)
+.++.+...+..++...+..|...+..+...-.. +. + ..++|.++..+.. .+...+..|+.+|+.++.+.+...
T Consensus 76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~ 155 (503)
T d1wa5b_ 76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 155 (503)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 3456666777888888888888888776532211 11 2 4578999999974 567889999999999998766543
Q ss_pred hhh-hhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCc--hhH--HhHHHHHHhccCCCChhHH-HHHHHHHhcc--c
Q 000143 1494 SQC-LPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKN--PEI--ASLVPTLLMGLTDPNDHTK-YSLDILLQTT--F 1565 (2058)
Q Consensus 1494 ~~~-L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~--~~i--~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~--f 1565 (2058)
... -..++|.+...+++++..++..|+++|+.++..... ..+ ..+++.++..+.+++..++ .+..++.... .
T Consensus 156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~ 235 (503)
T d1wa5b_ 156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 235 (503)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCC
Confidence 322 235789999999999999999999999999864321 111 3567888888888776654 4444444321 1
Q ss_pred cccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhCCCCHHHHHHHHHHHH
Q 000143 1566 VNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLVDPIPEVRSVAARAIG 1644 (2058)
Q Consensus 1566 ~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~d~~~~vR~~a~~aLg 1644 (2058)
...........++|.+...+...+++++..++.++..++.. ......... ..+++.+...+.++++.++..++.+++
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~--~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~ 313 (503)
T d1wa5b_ 236 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG--PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 313 (503)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC--CchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHH
Confidence 11222234556889999999999999999999999988752 222222222 367889999999999999999999999
Q ss_pred HHHHhhccc----CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh--H-H-HHhhHHHHHhhccCChhHHHHH
Q 000143 1645 SLIRGMGEE----NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--Y-F-EHILPDIIRNCSHQRASVRDGY 1716 (2058)
Q Consensus 1645 ~l~~~lg~~----~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~--~-l-~~llp~Ll~~l~~~~~~vR~~a 1716 (2058)
.++..-+.. .-..+++.+...+.+ .+..+|..++++++.++.+.... . . ..++|.++..+.+.++.+|..+
T Consensus 314 nl~~~~~~~~~~~~~~~~l~~l~~ll~~-~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a 392 (503)
T d1wa5b_ 314 NIVTGNDLQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 392 (503)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHhcC-CCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHH
Confidence 998543322 123578888888774 45568899999999886432111 1 1 4578889999999999999999
Q ss_pred HHHHHHhHHHhch--hHHHhH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcc------cc-------hh--chH
Q 000143 1717 LTLFKYLPRSLGV--QFQNYL--QQVLPAILDGLADENESVRDAALGAGHVLVEHYAT------TS-------LP--LLL 1777 (2058)
Q Consensus 1717 l~~l~~la~~~g~--~f~pyl--~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~------~~-------l~--~ll 1777 (2058)
++++..++..... +...++ ..+++++...|...+.++...++.++..++..... .. +. ..+
T Consensus 393 ~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~ 472 (503)
T d1wa5b_ 393 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 472 (503)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCH
Confidence 9999998875432 222333 34788999999988888888888888877643210 00 10 133
Q ss_pred HhHhhhcCCCCHHHHHHHHHHHHHH
Q 000143 1778 PAVEDGIFNDNWRIRQSSVELLGDL 1802 (2058)
Q Consensus 1778 p~L~~~l~d~~~~vR~sav~ll~~L 1802 (2058)
..|.....+++..++..|..++..+
T Consensus 473 ~~i~~Lq~~~~~~i~~~A~~il~~~ 497 (503)
T d1wa5b_ 473 EKIFNCQQNENDKIYEKAYKIIETY 497 (503)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4455555677888888887777665
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=3.7e-08 Score=125.54 Aligned_cols=386 Identities=13% Similarity=0.113 Sum_probs=261.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH-hhhhHHHHHhhC-CCCHHHHHHHHHHHHHHHHhhccc-
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI-GLLLPEVKKVLV-DPIPEVRSVAARAIGSLIRGMGEE- 1653 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl-~~ll~~L~~~l~-d~~~~vR~~a~~aLg~l~~~lg~~- 1653 (2058)
.++.+...+...+.+.+..++..+..+... .....+...+ ..++|.|...+. +.+++++..|+.+|+.++......
T Consensus 77 ~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~-~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~ 155 (503)
T d1wa5b_ 77 ELPQMTQQLNSDDMQEQLSATVKFRQILSR-EHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 155 (503)
T ss_dssp CHHHHHHHHSCSSHHHHHHHHHHHHHHTCC-SSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc-CCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 355566677777778888877777665431 1111111222 357889999887 557889999999999988533221
Q ss_pred ---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhch--hHH--HHhhHHHHHhhccCChhHHHHHHHHHHHhHHH
Q 000143 1654 ---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGT--VYF--EHILPDIIRNCSHQRASVRDGYLTLFKYLPRS 1726 (2058)
Q Consensus 1654 ---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~--~~l--~~llp~Ll~~l~~~~~~vR~~al~~l~~la~~ 1726 (2058)
.-..++|.+...|.+ .+..++..++++|+.++..... +.+ ..+++.++..+.+.+..++..+++++..++..
T Consensus 156 ~~~~~~g~i~~l~~lL~s-~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~ 234 (503)
T d1wa5b_ 156 KVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 234 (503)
T ss_dssp HHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCChHHHHHHhcC-CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence 123578888888875 4456899999999988743211 111 34678888889998999999999999998864
Q ss_pred hch--hHHHhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhccc---ch-hchHHhHhhhcCCCCHHHHHHHHHHHH
Q 000143 1727 LGV--QFQNYLQQVLPAILDGLADENESVRDAALGAGHVLVEHYATT---SL-PLLLPAVEDGIFNDNWRIRQSSVELLG 1800 (2058)
Q Consensus 1727 ~g~--~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~al~~lv~~~~~~---~l-~~llp~L~~~l~d~~~~vR~sav~ll~ 1800 (2058)
... .+ .....++|.+...+.+.+++++..++.++..+....... .+ ..++|.+...+.++++.++..++..++
T Consensus 235 ~~~~~~~-~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~ 313 (503)
T d1wa5b_ 235 KKPQPDW-SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 313 (503)
T ss_dssp SSSCCCH-HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CccchHH-HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHH
Confidence 322 22 345668999999999999999999999998876432211 11 236788888999999999999999999
Q ss_pred HHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhChhhHH
Q 000143 1801 DLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMVRSDVSLSVRQAALHVWKTIVANTPKTLK 1880 (2058)
Q Consensus 1801 ~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~~~D~~~~VR~aA~~~l~~lv~~~~~~l~ 1880 (2058)
.+... . +.....+.+ ..+++.+.....+.+..+|..+..++..++.+.+....
T Consensus 314 nl~~~-------------~-------~~~~~~~~~-------~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~ 366 (503)
T d1wa5b_ 314 NIVTG-------------N-------DLQTQVVIN-------AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 366 (503)
T ss_dssp HHTTS-------------C-------HHHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHH-------------H-------HHHHHhhhc-------cchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHH
Confidence 87411 0 011111111 12455566666777888999999999988876655444
Q ss_pred HhH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc--h-----hhchHHHHhhhcCCCChhHHHHHHHHHHHHHH
Q 000143 1881 EIM-PVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--V-----LPSIIPILSRGLKDPSASRRQGVCIGLSEVMA 1952 (2058)
Q Consensus 1881 ~~l-~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~--~-----l~~llp~L~~~l~d~~~~vR~~a~~aL~eii~ 1952 (2058)
.++ ..+++.++..+.+.+.+++..|+.+++.++...... . -..+++.+.+.+...+.++...+..++..++.
T Consensus 367 ~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~ 446 (503)
T d1wa5b_ 367 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 446 (503)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 443 356677777788889999999999999998865432 1 24678888889988888888877778877764
Q ss_pred hhChhh------hHhHH-----hhHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000143 1953 SAGKSQ------LLSFM-----DELIPTIRTALCDSILEVRESAGLAFSTL 1992 (2058)
Q Consensus 1953 ~~~~~~------l~~~~-----~~ll~~L~~~L~D~d~~VR~~Aa~a~~~l 1992 (2058)
...... ..+|. ...+..+..+..+++.+|++.|..-+...
T Consensus 447 ~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~ 497 (503)
T d1wa5b_ 447 MGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY 497 (503)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 321100 01111 12344455555678899988887665543
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=1.4e-08 Score=118.07 Aligned_cols=251 Identities=17% Similarity=0.119 Sum_probs=154.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 000143 1380 AATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLV 1459 (2058)
Q Consensus 1380 l~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~l 1459 (2058)
.+.|.+.+.++ ++.+|..|+.+++.+.. ...+|.++..+.|+++.||..|..+++.+..... ..+..
T Consensus 21 ~~~L~~~L~d~-~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~--~~~~~ 87 (276)
T d1oyza_ 21 DDELFRLLDDH-NSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK--CEDNV 87 (276)
T ss_dssp HHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT--THHHH
T ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc--cccch
Confidence 44556667765 88888888887765531 2567788888888888888888888876632211 11233
Q ss_pred HHHHHH-hccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhH
Q 000143 1460 LPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASL 1538 (2058)
Q Consensus 1460 lp~Ll~-~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~l 1538 (2058)
++.+.. .+.+++|.+|..++.+|+.+....+. ..+.+++.+...++|+++.||..++.+++.++. ...
T Consensus 88 ~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-------~~~ 156 (276)
T d1oyza_ 88 FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-------KAT 156 (276)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----------CC
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-------HHH
Confidence 333333 34577888888888888887765432 334677777788888888888888877766543 223
Q ss_pred HHHHHhccCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhH
Q 000143 1539 VPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYI 1617 (2058)
Q Consensus 1539 vp~Ll~~l~d~~~~vr~-al~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl 1617 (2058)
++.+...+.+.+..++. +...++.... ......+.+...+.+.++.++..+...++.+. +
T Consensus 157 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~----~-------- 217 (276)
T d1oyza_ 157 IPLLINLLKDPNGDVRNWAAFAININKY-------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D-------- 217 (276)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTC-------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C--------
T ss_pred HHHHHHhcccccchhhhhHHHHHHhhhc-------cccccchhhhhhhhhhhhhhhhhhccccchhh----h--------
Confidence 45555566666665542 2222221000 01224455566667777777777666655432 1
Q ss_pred hhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHH
Q 000143 1618 GLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGL 1682 (2058)
Q Consensus 1618 ~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L 1682 (2058)
+..++.+...+.|+ .+|..++.+||.++ + +..+|.|...+.++.+..+|..+..+|
T Consensus 218 ~~~~~~L~~~l~d~--~vr~~a~~aL~~ig----~---~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 218 KRVLSVLCDELKKN--TVYDDIIEAAGELG----D---KTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp GGGHHHHHHHHTSS--SCCHHHHHHHHHHC----C---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred hhhHHHHHHHhCCh--HHHHHHHHHHHHcC----C---HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 22455566666654 47777777777653 2 356777777776655666777776665
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=5.2e-08 Score=112.98 Aligned_cols=249 Identities=14% Similarity=0.085 Sum_probs=181.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHH
Q 000143 1423 PLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVP 1502 (2058)
Q Consensus 1423 p~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip 1502 (2058)
+.++..++|+++.||..|..+|+.+.. +..+|.+.+.+.++++.+|..|+.+|+.+...... .+.+++
T Consensus 22 ~~L~~~L~d~~~~vR~~A~~~L~~~~~-------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-----~~~~~~ 89 (276)
T d1oyza_ 22 DELFRLLDDHNSLKRISSARVLQLRGG-------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-----EDNVFN 89 (276)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-----HHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-----ccchHH
Confidence 456789999999999999999987632 35678889999999999999999999987543221 122233
Q ss_pred HH-HHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhhHHHH
Q 000143 1503 KL-TEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLALLVPI 1580 (2058)
Q Consensus 1503 ~L-~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~llp~ 1580 (2058)
.+ ...++|+++.||..++.+|+.++..-. .....+++.+...+.|+...+| .++..++... -...++.
T Consensus 90 ~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~-~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~---------~~~~~~~ 159 (276)
T d1oyza_ 90 ILNNMALNDKSACVRATAIESTAQRCKKNP-IYSPKIVEQSQITAFDKSTNVRRATAFAISVIN---------DKATIPL 159 (276)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------------CCHHH
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHccccc-hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcc---------hHHHHHH
Confidence 33 335789999999999999999986432 2346788889999999988887 5666665311 1234677
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHH
Q 000143 1581 VHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVS 1660 (2058)
Q Consensus 1581 L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp 1660 (2058)
+...+.+.++.++..+...++.+.. . .....+.+...+.++++.+|..+..+++.+. -+..+|
T Consensus 160 l~~l~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~-------~~~~~~ 222 (276)
T d1oyza_ 160 LINLLKDPNGDVRNWAAFAININKY---D-------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK-------DKRVLS 222 (276)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTC---C-------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-------CGGGHH
T ss_pred HHHhcccccchhhhhHHHHHHhhhc---c-------ccccchhhhhhhhhhhhhhhhhhccccchhh-------hhhhHH
Confidence 7788888888888887776665432 1 1235566777888999999999988887653 246788
Q ss_pred HHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhccC-ChhHHHHHHHHH
Q 000143 1661 WLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSHQ-RASVRDGYLTLF 1720 (2058)
Q Consensus 1661 ~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~~-~~~vR~~al~~l 1720 (2058)
.+++.+.++ .+|..++.+|+++ |. +..+|.+...+.+. +..+|..++..+
T Consensus 223 ~L~~~l~d~---~vr~~a~~aL~~i----g~---~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 223 VLCDELKKN---TVYDDIIEAAGEL----GD---KTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp HHHHHHTSS---SCCHHHHHHHHHH----CC---GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred HHHHHhCCh---HHHHHHHHHHHHc----CC---HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 888888732 3788899998876 33 25677777767654 788998888765
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=2.5e-06 Score=105.15 Aligned_cols=399 Identities=12% Similarity=0.075 Sum_probs=204.1
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhh--HhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc-
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPY--IGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE- 1653 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~py--l~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~- 1653 (2058)
.+|.+.+.|++.+++++..|+.+++++|. ++. +.... -...+|.|.+++.++++++|..|+.+|+.++..-.+.
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~--~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 79 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCF--QDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTS--SCS-SHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHc--CCH-HHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 47889999999999999999999999985 232 22222 2356899999999999999999999999998432211
Q ss_pred ---CccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchh--HHHHhhHHHHHhh----------------ccCChhH
Q 000143 1654 ---NFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTV--YFEHILPDIIRNC----------------SHQRASV 1712 (2058)
Q Consensus 1654 ---~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~--~l~~llp~Ll~~l----------------~~~~~~v 1712 (2058)
.-...++.++..+.++.+..+|..++.++..++...... ....-++.+...+ ...+..+
T Consensus 80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v 159 (457)
T d1xm9a1 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence 122467888888887777778999999998886543221 1222223332222 2236778
Q ss_pred HHHHHHHHHHhHHHhchh-HHHhHHHHHHHHHHhccCCCH------HHHHHHHHHHHHHHHHhcccchhchHHhHhhhcC
Q 000143 1713 RDGYLTLFKYLPRSLGVQ-FQNYLQQVLPAILDGLADENE------SVRDAALGAGHVLVEHYATTSLPLLLPAVEDGIF 1785 (2058)
Q Consensus 1713 R~~al~~l~~la~~~g~~-f~pyl~~ilp~Ll~~L~d~~~------~VR~~a~~al~~lv~~~~~~~l~~llp~L~~~l~ 1785 (2058)
+..++.++..++...... .......++|.+...+.+... .........+.......... ....+..+.....
T Consensus 160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 238 (457)
T d1xm9a1 160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE-VPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHH-SCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHH-HHHHHHHHHhhhh
Confidence 888877776665432211 000112234444444321110 11111111111110000000 0001111111000
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCcccccccCCCCCCCcchHHHHHHHHHHhChhhHHHHHHHHHHh-hcCCCHHHHHHH
Q 000143 1786 NDNWRIRQSSVELLGDLLFKVAGTSGKALLEGGSDDEGASTEAHGRAIIEVLGRDKRNEVLAALYMV-RSDVSLSVRQAA 1864 (2058)
Q Consensus 1786 d~~~~vR~sav~ll~~Ll~~~~g~~~k~~~~~~~e~~~~~~e~~~~~l~~~Lg~~~~~~vL~~L~~~-~~D~~~~VR~aA 1864 (2058)
+..........++..............+......... .. .+ .....+..+... .......++..+
T Consensus 239 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~---~~~~~i~~l~~l~~~~~~~~~~~~~ 304 (457)
T d1xm9a1 239 --NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG-SG--------WL---YHSDAIRTYLNLMGKSKKDATLEAC 304 (457)
T ss_dssp -----------------------------CCCCCSSCCG-GG--------GG---GSHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred --hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHH-HH--------HH---HhhcHHHHHHHHHhcccchHHHHHH
Confidence 0000001111111100000000000000000000000 00 00 001122222221 223345566666
Q ss_pred HHHHHHHHhhChhh----HHHhH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcc--hhhchHHHHhhhcCC--
Q 000143 1865 LHVWKTIVANTPKT----LKEIM--PVLMNTLISSLASSSSERRQVAGRALGELVRKLGER--VLPSIIPILSRGLKD-- 1934 (2058)
Q Consensus 1865 ~~~l~~lv~~~~~~----l~~~l--~~L~~~l~~~L~~~~~~~R~~A~~~Lg~L~~~lg~~--~l~~llp~L~~~l~d-- 1934 (2058)
...+..+..+.... ....+ ...++.++..+.+++..+|..++.+++.++..-... +....+|.+...+.+
T Consensus 305 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~ 384 (457)
T d1xm9a1 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHT 384 (457)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCC
T ss_pred HHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccc
Confidence 66666665432211 11111 234566777789999999999999999997542211 223456666665542
Q ss_pred ----CChhHHHHHHHHHHHHHHhhChhhhHhHH-hhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Q 000143 1935 ----PSASRRQGVCIGLSEVMASAGKSQLLSFM-DELIPTIRTALCD-SILEVRESAGLAFSTLFK 1994 (2058)
Q Consensus 1935 ----~~~~vR~~a~~aL~eii~~~~~~~l~~~~-~~ll~~L~~~L~D-~d~~VR~~Aa~a~~~l~~ 1994 (2058)
.+.+++..+|.++..+....+ +...... ...++.|.+.+.+ .++.++++|+.++..++.
T Consensus 385 ~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~ 449 (457)
T d1xm9a1 385 GNTSNSEDILSSACYTVRNLMASQP-QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHTTCT-HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred cCcCCcHHHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHc
Confidence 235688999999998875443 2222222 3467888887755 578999999999988864
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=4e-05 Score=93.94 Aligned_cols=398 Identities=14% Similarity=0.063 Sum_probs=196.8
Q ss_pred HHHHHhhhCCCCHHHHHHHHHhhHhhHhhccc---ch--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhCc--ccc
Q 000143 1302 VDKLLDVLNTPSEAVQRAVSSCLSPLMQSMQD---EA--PTLVSRLLDQLMKSDKYGERRGAAFGLAGVVKGFGI--SSL 1374 (2058)
Q Consensus 1302 v~~Ll~~L~~~~~~V~~av~~~L~~l~~~~~~---~~--~~~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~g~--~~l 1374 (2058)
+|.|++.|+++++.+|..++.+|..+.....+ .+ ...++.+++.| .+++..+|..|+.+|..++..... ..+
T Consensus 4 ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 68899999999999999999999988743221 11 13466677654 566799999999999999853221 112
Q ss_pred chhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHc----------------CCCCHHHHH
Q 000143 1375 KKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAF----------------SDQVVAVRE 1438 (2058)
Q Consensus 1375 ~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l----------------~D~~~~VR~ 1438 (2058)
.....++.+...+.+..++..|..+..++..++...... .......++.++..+ ...++.++.
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 161 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK-EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH-HHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhH-HHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence 223457777777777668899999999998887643321 111222223322222 223456666
Q ss_pred HHHHHHHHHHHhhhhhhH----HhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHH
Q 000143 1439 AAECAARAMMSQLSAQGV----KLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPK 1514 (2058)
Q Consensus 1439 aA~~al~~l~~~l~~~~v----~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~ 1514 (2058)
.+..++..+......... ..+++.+...+.+.....+ ........+...+.+....
T Consensus 162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~--------------------~~~~~~~~~~~~l~~~~~~ 221 (457)
T d1xm9a1 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASR--------------------CDDKSVENCMCVLHNLSYR 221 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTC--------------------TTCTTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhh--------------------hHHHHHHHHHHHHhhhhhh
Confidence 666665554322211100 1122222222211000000 0000000000011110111
Q ss_pred HHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHh-cc-ccccCChhhHhhHHHHHHHhh-cCCCH
Q 000143 1515 VQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQ-TT-FVNTVDAPSLALLVPIVHRGL-RERSA 1590 (2058)
Q Consensus 1515 VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~-~~-f~~~~~~~~l~~llp~L~~~L-~d~s~ 1590 (2058)
++......+..+.....+........ ..+........ ........ .. .............++.+...+ ...+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 298 (457)
T d1xm9a1 222 LDAEVPTRYRQLEYNARNAYTEKSST---GCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298 (457)
T ss_dssp HHHHSCCHHHHHHHTC-------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred hHHHHHHHHHHHHhhhhhhhhHHHhh---hhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccch
Confidence 11111111111111111100000000 00000000000 00000000 00 000001111123445554444 34567
Q ss_pred HHHHHHHHHHHHHHhhhCCCC-c-hhh--hHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhccc--CccchHHHHHh
Q 000143 1591 ETKKKAAQIVGNMCSLVTEPK-D-MIP--YIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEE--NFPDLVSWLLD 1664 (2058)
Q Consensus 1591 ~vr~~A~~~l~~L~~~l~~~~-~-l~p--yl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~--~~~~llp~L~~ 1664 (2058)
.++..+..++..++....... . ... .-...++.+...+.++++.+|..++.+++.++..-... .....+|.++.
T Consensus 299 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~ 378 (457)
T d1xm9a1 299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTR 378 (457)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHH
Confidence 777777777777764211100 0 001 11347899999999999999999999999998532211 12245666777
Q ss_pred hcccC-----CChHHHhhHHHHHHHHHHHhchh--HH--HHhhHHHHHhhccC-ChhHHHHHHHHHHHhH
Q 000143 1665 ALKSD-----NSNVERSGAAQGLSEVLAALGTV--YF--EHILPDIIRNCSHQ-RASVRDGYLTLFKYLP 1724 (2058)
Q Consensus 1665 ~L~~d-----~~~~~R~~aa~~L~~i~~~~g~~--~l--~~llp~Ll~~l~~~-~~~vR~~al~~l~~la 1724 (2058)
.|... .+.+++..++.+|..++...... .+ ...++.+.+.+.+. ++.+++++..++..++
T Consensus 379 ~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~ 448 (457)
T d1xm9a1 379 LLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp TTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 66532 23456777888888776432221 11 24677888877665 6789999999888774
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.18 E-value=1.4e-07 Score=92.92 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=85.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHh
Q 000143 1429 FSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVL 1508 (2058)
Q Consensus 1429 l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L 1508 (2058)
++|+++.||..|..+++.+ +++ .++.+++.+.+++|.+|..++.+||.+.. +..+|.+.+++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~~~----~~~~L~~~l~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l 62 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----GDE----AFEPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPLIKLL 62 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----SST----THHHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh----CHH----HHHHHHHHHcCCCHHHHHHHHHHHHhcch----------hhhHHHHHhhh
Confidence 5789999999998888754 322 45677889999999999999999986542 35678888999
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHH
Q 000143 1509 TDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDIL 1560 (2058)
Q Consensus 1509 ~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L 1560 (2058)
+|+++.||.+|+++|+.++. +..+|.+...+.|++..+| .|+.+|
T Consensus 63 ~d~~~~VR~~a~~aL~~i~~-------~~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 63 EDDSGFVRSGAARSLEQIGG-------ERVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp HHCCTHHHHHHHHHHHHHCS-------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred ccchhHHHHHHHHHHHHhCc-------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999998864 3456777778888888887 455554
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=6.1e-05 Score=86.07 Aligned_cols=181 Identities=14% Similarity=0.071 Sum_probs=126.4
Q ss_pred CHHHHHHHHHHHHHHHHhhhhh-hH--HhHHHHHHH-hccCCChHHHHHHHHHHHHHHhhChhh-HhhhhhhHHHHHHHH
Q 000143 1433 VVAVREAAECAARAMMSQLSAQ-GV--KLVLPSLLK-GLEDKAWRTKQSSVQLLGAMAYCAPQQ-LSQCLPKIVPKLTEV 1507 (2058)
Q Consensus 1433 ~~~VR~aA~~al~~l~~~l~~~-~v--~~llp~Ll~-~L~~~~~~~R~~a~~~Lg~la~~~p~~-l~~~L~~Iip~L~~~ 1507 (2058)
+...|..|.+++..++...... .+ ..-++.++. .+.+++..+|..|+.+|+.++...+.. ..-.-...+|.++..
T Consensus 30 ~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l 109 (264)
T d1xqra1 30 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 109 (264)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 3466777777777776543321 12 123555554 677889999999999999999876642 222224788999998
Q ss_pred hc-CCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHHHHHHHHhccccccCChhhHhhHHHHHHHhhc
Q 000143 1508 LT-DTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKYSLDILLQTTFVNTVDAPSLALLVPIVHRGLR 1586 (2058)
Q Consensus 1508 L~-D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~al~~L~~~~f~~~~~~~~l~~llp~L~~~L~ 1586 (2058)
++ +.++.||..++.++..++....+. +. .+. ....++.+.+.++
T Consensus 110 L~~~~~~~v~~~a~~aL~~l~~~~~~~--------------------~~---~~~------------~~~gi~~L~~lL~ 154 (264)
T d1xqra1 110 LDRDACDTVRVKALFAISCLVREQEAG--------------------LL---QFL------------RLDGFSVLMRAMQ 154 (264)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHH--------------------HH---HHH------------HTTHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHhccchhh--------------------HH---HHH------------HhhhhhHHHHHHh
Confidence 85 678999999999999997643210 00 000 1123566667777
Q ss_pred CCCHHHHHHHHHHHHHHHhhhCCCCchhhhHh-hhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhh
Q 000143 1587 ERSAETKKKAAQIVGNMCSLVTEPKDMIPYIG-LLLPEVKKVLVDPIPEVRSVAARAIGSLIRGM 1650 (2058)
Q Consensus 1587 d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~-~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~l 1650 (2058)
+.+..++..++.++++++.. ++.....+.. ..+|.+..++.++++++|..+..+|+.++...
T Consensus 155 ~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 155 QQVQKLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp SSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred cCchHHHHHHHHHHHHHHhc--cHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 78889999999999998863 3333333332 47899999999999999999999999998643
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=3.3e-05 Score=88.33 Aligned_cols=144 Identities=17% Similarity=0.133 Sum_probs=112.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhH--HHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhhhhhh--H--H
Q 000143 1385 EGLADRNSAKRREGALLAFECLCEKLGRLFEPYV--IQMLPLLLVAFS-DQVVAVREAAECAARAMMSQLSAQG--V--K 1457 (2058)
Q Consensus 1385 ~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l--~~llp~Ll~~l~-D~~~~VR~aA~~al~~l~~~l~~~~--v--~ 1457 (2058)
..+.++ ++.+|..|+.+++.++..-.. ....+ ...+|.++..+. +.++.+|..+..++..++...+... + .
T Consensus 66 ~ll~s~-~~~vr~~A~~~L~~l~~~~~~-~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~ 143 (264)
T d1xqra1 66 RYLEAG-AAGLRWRAAQLIGTCSQNVAA-IQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRL 143 (264)
T ss_dssp TTTTCS-SHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHh
Confidence 344444 899999999999999864332 12222 257888888874 6789999999999999987665432 2 4
Q ss_pred hHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhh-hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 000143 1458 LVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCL-PKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVI 1530 (2058)
Q Consensus 1458 ~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L-~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~ 1530 (2058)
..++.+.+.+.+.+..++..++.+++.++...+....... ...+|.+..++.++++.+|..|+++|..++...
T Consensus 144 ~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~ 217 (264)
T d1xqra1 144 DGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 217 (264)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 5688899999999999999999999999988775433322 257899999999999999999999999998643
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=97.68 E-value=8.5e-06 Score=90.08 Aligned_cols=182 Identities=20% Similarity=0.188 Sum_probs=114.5
Q ss_pred HhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHh
Q 000143 1465 KGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLM 1544 (2058)
Q Consensus 1465 ~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~ 1544 (2058)
..+.++.|.+|..|.. +++ +..|..+++|+++.||.+|...|+ . +.+..
T Consensus 49 ~~l~~p~~e~Ra~Aa~-------~a~----------~~~L~~Ll~D~d~~VR~~AA~~Lp-------~-------~~L~~ 97 (233)
T d1lrva_ 49 QYLADPFWERRAIAVR-------YSP----------VEALTPLIRDSDEVVRRAVAYRLP-------R-------EQLSA 97 (233)
T ss_dssp GGTTCSSHHHHHHHHT-------TSC----------GGGGGGGTTCSSHHHHHHHHTTSC-------S-------GGGGG
T ss_pred HHhcCCcHHHHHHHHh-------cCC----------HHHHHHHhcCCCHHHHHHHHHHcC-------H-------HHHHH
Confidence 3667889999965542 222 223456789999999999876542 1 23556
Q ss_pred ccCCCChhHHHH-HHHHHhccccccCChhhHhhHHHHHHHhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHH
Q 000143 1545 GLTDPNDHTKYS-LDILLQTTFVNTVDAPSLALLVPIVHRGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPE 1623 (2058)
Q Consensus 1545 ~l~d~~~~vr~a-l~~L~~~~f~~~~~~~~l~~llp~L~~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~ 1623 (2058)
.+.|++..||.+ ...+. .+.+...++|+++.||..+++. + . .+.
T Consensus 98 L~~D~d~~VR~~aa~~l~----------------~~~L~~Ll~D~d~~VR~~aa~~---~-----~-----------~~~ 142 (233)
T d1lrva_ 98 LMFDEDREVRITVADRLP----------------LEQLEQMAADRDYLVRAYVVQR---I-----P-----------PGR 142 (233)
T ss_dssp TTTCSCHHHHHHHHHHSC----------------TGGGGGGTTCSSHHHHHHHHHH---S-----C-----------GGG
T ss_pred HhcCCChhHHHHHHhccC----------------HHHHHHHhcCCCHHHHHHHHhc---c-----c-----------hhH
Confidence 778998888843 22221 1234456788999999876542 1 1 112
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhhcccCCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHH
Q 000143 1624 VKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDALKSDNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIR 1703 (2058)
Q Consensus 1624 L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~L~~d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~ 1703 (2058)
+..++.|+++.||..++.. ++. +.+...+ +|.+..+|..++..+ |. +.+..
T Consensus 143 L~~L~~D~d~~VR~~aA~~-------~~~-------~~L~~l~-~D~d~~VR~~aa~~L-------~~-------~~L~~ 193 (233)
T d1lrva_ 143 LFRFMRDEDRQVRKLVAKR-------LPE-------ESLGLMT-QDPEPEVRRIVASRL-------RG-------DDLLE 193 (233)
T ss_dssp GGGTTTCSCHHHHHHHHHH-------SCG-------GGGGGST-TCSSHHHHHHHHHHC-------CG-------GGGGG
T ss_pred HHHHhcCCCHHHHHHHHHh-------cCH-------HHHHHHc-cCCCHHHHHHHHHhc-------Cc-------HHHHH
Confidence 3345678999999877653 222 2333333 467777888777654 22 23445
Q ss_pred hhccCChhHHHHHHHHHHHhHHHhchhHHHhHHHHHHHHHHhccCCCHHHHHHHHH
Q 000143 1704 NCSHQRASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAILDGLADENESVRDAALG 1759 (2058)
Q Consensus 1704 ~l~~~~~~vR~~al~~l~~la~~~g~~f~pyl~~ilp~Ll~~L~d~~~~VR~~a~~ 1759 (2058)
.+.|+++.||..+..- . -+.++..|.|+++.||..+..
T Consensus 194 l~~D~d~~VR~aaae~-------~-----------~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 194 LLHDPDWTVRLAAVEH-------A-----------SLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp GGGCSSHHHHHHHHHH-------S-----------CHHHHHHCCCCCHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHHh-------c-----------cHHHHHHhCCCCHHHHHHHHH
Confidence 6678899999876531 1 234567788999999987754
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=97.60 E-value=5e-06 Score=91.98 Aligned_cols=183 Identities=19% Similarity=0.128 Sum_probs=114.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhhCccccchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Q 000143 1344 DQLMKSDKYGERRGAAFGLAGVVKGFGISSLKKYGIAATLREGLADRNSAKRREGALLAFECLCEKLGRLFEPYVIQMLP 1423 (2058)
Q Consensus 1344 ~~L~~~~~~~vR~~Aa~~L~~l~~~~g~~~l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~lg~~~~p~l~~llp 1423 (2058)
+....+..+.+|..|+. .... ..|...++|+ ++.+|.++... +|. +
T Consensus 48 ~~~l~~p~~e~Ra~Aa~-------~a~~---------~~L~~Ll~D~-d~~VR~~AA~~-------Lp~----------~ 93 (233)
T d1lrva_ 48 VQYLADPFWERRAIAVR-------YSPV---------EALTPLIRDS-DEVVRRAVAYR-------LPR----------E 93 (233)
T ss_dssp GGGTTCSSHHHHHHHHT-------TSCG---------GGGGGGTTCS-SHHHHHHHHTT-------SCS----------G
T ss_pred HHHhcCCcHHHHHHHHh-------cCCH---------HHHHHHhcCC-CHHHHHHHHHH-------cCH----------H
Confidence 33445666778855542 2211 1233445665 89999887543 332 2
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHH
Q 000143 1424 LLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPK 1503 (2058)
Q Consensus 1424 ~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~ 1503 (2058)
.+...+.|++..||..+...+ +. +.+...+.|++|.+|..+...+ +. +.
T Consensus 94 ~L~~L~~D~d~~VR~~aa~~l-------~~-------~~L~~Ll~D~d~~VR~~aa~~~-------~~----------~~ 142 (233)
T d1lrva_ 94 QLSALMFDEDREVRITVADRL-------PL-------EQLEQMAADRDYLVRAYVVQRI-------PP----------GR 142 (233)
T ss_dssp GGGGTTTCSCHHHHHHHHHHS-------CT-------GGGGGGTTCSSHHHHHHHHHHS-------CG----------GG
T ss_pred HHHHHhcCCChhHHHHHHhcc-------CH-------HHHHHHhcCCCHHHHHHHHhcc-------ch----------hH
Confidence 345677899999998876543 22 2344557789999998876531 11 12
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHHH-HHHHHHhccccccCChhhHhhHHHHHH
Q 000143 1504 LTEVLTDTHPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTKY-SLDILLQTTFVNTVDAPSLALLVPIVH 1582 (2058)
Q Consensus 1504 L~~~L~D~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr~-al~~L~~~~f~~~~~~~~l~~llp~L~ 1582 (2058)
+..+++|+++.||.+++..++ .+.+...+.|++..+|. +...++ .|.+.
T Consensus 143 L~~L~~D~d~~VR~~aA~~~~--------------~~~L~~l~~D~d~~VR~~aa~~L~----------------~~~L~ 192 (233)
T d1lrva_ 143 LFRFMRDEDRQVRKLVAKRLP--------------EESLGLMTQDPEPEVRRIVASRLR----------------GDDLL 192 (233)
T ss_dssp GGGTTTCSCHHHHHHHHHHSC--------------GGGGGGSTTCSSHHHHHHHHHHCC----------------GGGGG
T ss_pred HHHHhcCCCHHHHHHHHHhcC--------------HHHHHHHccCCCHHHHHHHHHhcC----------------cHHHH
Confidence 345678999999998775321 13456778899888873 443332 13455
Q ss_pred HhhcCCCHHHHHHHHHHHHHHHhhhCCCCchhhhHhhhhHHHHHhhCCCCHHHHHHHHH
Q 000143 1583 RGLRERSAETKKKAAQIVGNMCSLVTEPKDMIPYIGLLLPEVKKVLVDPIPEVRSVAAR 1641 (2058)
Q Consensus 1583 ~~L~d~s~~vr~~A~~~l~~L~~~l~~~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~ 1641 (2058)
..++|+++.||..+++. +-+.++..+.|+++.||..+++
T Consensus 193 ~l~~D~d~~VR~aaae~--------------------~~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 193 ELLHDPDWTVRLAAVEH--------------------ASLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp GGGGCSSHHHHHHHHHH--------------------SCHHHHHHCCCCCHHHHHHHHC
T ss_pred HHHhCCCHHHHHHHHHh--------------------ccHHHHHHhCCCCHHHHHHHHH
Confidence 67789999999876531 1133456678999999988764
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.55 E-value=5.1e-05 Score=73.92 Aligned_cols=105 Identities=15% Similarity=0.156 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHhccCCC
Q 000143 1392 SAKRREGALLAFECLCEKLGRLFEPYVIQMLPLLLVAFSDQVVAVREAAECAARAMMSQLSAQGVKLVLPSLLKGLEDKA 1471 (2058)
Q Consensus 1392 ~~~~R~~al~al~~L~~~lg~~~~p~l~~llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~~~v~~llp~Ll~~L~~~~ 1471 (2058)
|+.+|..|+.+++.+ |. ..++.++..+.|+++.||..|..+++.+. -...+|.+.+.+.|++
T Consensus 5 ~~~VR~~A~~aL~~~----~~-------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~-------~~~~~~~L~~~l~d~~ 66 (111)
T d1te4a_ 5 NKWVRRDVSTALSRM----GD-------EAFEPLLESLSNEDWRIRGAAAWIIGNFQ-------DERAVEPLIKLLEDDS 66 (111)
T ss_dssp CCCSSSSCCSSTTSC----SS-------TTHHHHHHGGGCSCHHHHHHHHHHHGGGC-------SHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHh----CH-------HHHHHHHHHHcCCCHHHHHHHHHHHHhcc-------hhhhHHHHHhhhccch
Confidence 677777777766543 22 23456778899999999999999887542 1356788889999999
Q ss_pred hHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHHHHHhcCCCHHHHHHHHHHHH
Q 000143 1472 WRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKLTEVLTDTHPKVQSAGQTALQ 1524 (2058)
Q Consensus 1472 ~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L~~~L~D~~~~VR~aA~~aL~ 1524 (2058)
|.+|..++.+||.+.. +..++.|..+++|+++.||.+|+.+|.
T Consensus 67 ~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 67 GFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp THHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999998742 366788888999999999999999874
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=96.35 E-value=0.061 Score=62.09 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhhh-------hhHHhHHHHHHHhccCCChHHHHHHHHHHHHHHhhChhhHhhhhhhHHHHH
Q 000143 1432 QVVAVREAAECAARAMMSQLSA-------QGVKLVLPSLLKGLEDKAWRTKQSSVQLLGAMAYCAPQQLSQCLPKIVPKL 1504 (2058)
Q Consensus 1432 ~~~~VR~aA~~al~~l~~~l~~-------~~v~~llp~Ll~~L~~~~~~~R~~a~~~Lg~la~~~p~~l~~~L~~Iip~L 1504 (2058)
.++.+|..+.-+++.++..+-. +.++.+...+.+.....+...+..++.+||++.. +.+++.+
T Consensus 139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i~~l 208 (336)
T d1lsha1 139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSIKKI 208 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHHHHH
Confidence 4678888888888888765432 1234444445555566677777888999998752 3555666
Q ss_pred HHHhcC-------CCHHHHHHHHHHHHHHHhhcCchhHHhHHHHHHhccCCCChhHH-HHHHHHHhccccccCChhhHhh
Q 000143 1505 TEVLTD-------THPKVQSAGQTALQQVGSVIKNPEIASLVPTLLMGLTDPNDHTK-YSLDILLQTTFVNTVDAPSLAL 1576 (2058)
Q Consensus 1505 ~~~L~D-------~~~~VR~aA~~aL~~l~~~~~~~~i~~lvp~Ll~~l~d~~~~vr-~al~~L~~~~f~~~~~~~~l~~ 1576 (2058)
...+.+ ....+|.+|.+||.+++........+.+++.+.+. +.+..+| .|+..+..+ .|+...
T Consensus 209 ~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~~l~~i~~n~--~e~~EvRiaA~~~lm~t-------~P~~~~ 279 (336)
T d1lsha1 209 QRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNV--AIKSELRIRSCIVFFES-------KPSVAL 279 (336)
T ss_dssp HTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCT--TSCHHHHHHHHHHHHHT-------CCCHHH
T ss_pred HHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhc-------CCCHHH
Confidence 666643 35789999999999987643211223344444432 1234567 566665432 133333
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 000143 1577 LVPIVHRGLRERSAETKKKAAQIVGNMCS 1605 (2058)
Q Consensus 1577 llp~L~~~L~d~s~~vr~~A~~~l~~L~~ 1605 (2058)
+-.+....-.|++..|+......+.++++
T Consensus 280 l~~i~~~l~~E~~~QV~sfv~S~l~~la~ 308 (336)
T d1lsha1 280 VSMVAVRLRREPNLQVASFVYSQMRSLSR 308 (336)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 33333333456777777776666666655
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=92.95 E-value=2.9 Score=47.36 Aligned_cols=159 Identities=12% Similarity=0.018 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHHHhhhCC--CCchhhhHhhhhHHHHHhhCCCCHHHHHHHHHHHHHHHHhhcccCccchHHHHHhh
Q 000143 1588 RSAETKKKAAQIVGNMCSLVTE--PKDMIPYIGLLLPEVKKVLVDPIPEVRSVAARAIGSLIRGMGEENFPDLVSWLLDA 1665 (2058)
Q Consensus 1588 ~s~~vr~~A~~~l~~L~~~l~~--~~~l~pyl~~ll~~L~~~l~d~~~~vR~~a~~aLg~l~~~lg~~~~~~llp~L~~~ 1665 (2058)
.++.++..+.-.+|+|...... +..-.++.+.+...+.+.....+.+.+..+.+|||.++ .+..++.+...
T Consensus 139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-------~p~~i~~l~~~ 211 (336)
T d1lsha1 139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG-------QPNSIKKIQRF 211 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------CGGGHHHHHTT
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC-------CHhHHHHHHHH
Confidence 4678888888888887654322 12223445555566666666677777778888888775 24567777666
Q ss_pred ccc------CCChHHHhhHHHHHHHHHHHhchhHHHHhhHHHHHhhcc--CChhHHHHHHHHHHHhHHHhchhHHHhHHH
Q 000143 1666 LKS------DNSNVERSGAAQGLSEVLAALGTVYFEHILPDIIRNCSH--QRASVRDGYLTLFKYLPRSLGVQFQNYLQQ 1737 (2058)
Q Consensus 1666 L~~------d~~~~~R~~aa~~L~~i~~~~g~~~l~~llp~Ll~~l~~--~~~~vR~~al~~l~~la~~~g~~f~pyl~~ 1737 (2058)
+.. +....+|..+.+++..+.... +. .+.+.++..+.+ .++++|.+++..+-.- -+ .. .
T Consensus 212 l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~---~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P-----~~-~ 278 (336)
T d1lsha1 212 LPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PR---KVQEIVLPIFLNVAIKSELRIRSCIVFFES---KP-----SV-A 278 (336)
T ss_dssp STTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HH---HHHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CC-----CH-H
T ss_pred hcccccccccccHHHHHHHHHHHHHhhhcC-cH---HHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CC-----CH-H
Confidence 643 224568888888887654322 11 222223333333 3688888877665432 11 11 1
Q ss_pred HHHHHHHhc-cCCCHHHHHHHHHHHHHHHH
Q 000143 1738 VLPAILDGL-ADENESVRDAALGAGHVLVE 1766 (2058)
Q Consensus 1738 ilp~Ll~~L-~d~~~~VR~~a~~al~~lv~ 1766 (2058)
.+..+...+ .+++..|+......+..+.+
T Consensus 279 ~l~~i~~~l~~E~~~QV~sfv~S~l~~la~ 308 (336)
T d1lsha1 279 LVSMVAVRLRREPNLQVASFVYSQMRSLSR 308 (336)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 333344433 46677787777777666543
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.57 E-value=23 Score=38.56 Aligned_cols=182 Identities=15% Similarity=0.189 Sum_probs=115.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-Cccc------cchhchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Q 000143 1338 LVSRLLDQLMKSDKYGERRGAAFGLAGVVKGF-GISS------LKKYGIAATLREGLADRNSAKRREGALLAFECLCEKL 1410 (2058)
Q Consensus 1338 ~v~~Ll~~L~~~~~~~vR~~Aa~~L~~l~~~~-g~~~------l~~~~il~~L~~~l~~~~~~~~R~~al~al~~L~~~l 1410 (2058)
.+..++..|..= +++.|+.++...+.+...- |... ....+++..|.....+++ . |+ ..|.+.+.+
T Consensus 70 ~l~~Li~~L~~L-~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~e-i-----Al-~~G~mLREc 141 (330)
T d1upka_ 70 LLSTLVADLQLI-DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPE-I-----AL-NCGIMLREC 141 (330)
T ss_dssp HHHHHHHTGGGS-CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTT-T-----HH-HHHHHHHHH
T ss_pred hHHHHHHhCCCC-CCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcc-h-----hh-hhhHHHHHH
Confidence 344444444333 5888999988888888632 2211 112256666666665542 1 11 122222222
Q ss_pred cccchhhHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh-------hhHHhHHHHHHHhccCCChHHHHHH
Q 000143 1411 GRLFEPYVIQ-----MLPLLLVAFSDQVVAVREAAECAARAMMSQLSA-------QGVKLVLPSLLKGLEDKAWRTKQSS 1478 (2058)
Q Consensus 1411 g~~~~p~l~~-----llp~Ll~~l~D~~~~VR~aA~~al~~l~~~l~~-------~~v~~llp~Ll~~L~~~~~~~R~~a 1478 (2058)
-+ .++.... -+-.+++.+.-++-+|..-|..+++.+...... ...+.+...+...+.++++-+|+.+
T Consensus 142 ik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqS 220 (330)
T d1upka_ 142 IR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 220 (330)
T ss_dssp HT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred Hh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHH
Confidence 11 1221111 223455667778888888888888887755432 1235677777777889999999999
Q ss_pred HHHHHHHHhhC--hhhHhhhh--hhHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 000143 1479 VQLLGAMAYCA--PQQLSQCL--PKIVPKLTEVLTDTHPKVQSAGQTALQQVGS 1528 (2058)
Q Consensus 1479 ~~~Lg~la~~~--p~~l~~~L--~~Iip~L~~~L~D~~~~VR~aA~~aL~~l~~ 1528 (2058)
+.+||.+.-.. ...|..|+ +.-+..++.+|+|....++-.|...++-|+.
T Consensus 221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA 274 (330)
T d1upka_ 221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 274 (330)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence 99999998543 23455555 4556678899999999999999998888875
|