Citrus Sinensis ID: 000145
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2054 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SNC6 | 660 | U-box domain-containing p | no | no | 0.107 | 0.333 | 0.267 | 2e-09 | |
| Q5VRH9 | 611 | U-box domain-containing p | no | no | 0.095 | 0.322 | 0.276 | 6e-09 | |
| O22193 | 826 | U-box domain-containing p | no | no | 0.127 | 0.315 | 0.278 | 2e-08 | |
| Q9ZV31 | 654 | U-box domain-containing p | no | no | 0.108 | 0.340 | 0.267 | 6e-06 | |
| Q0IMG9 | 694 | E3 ubiquitin-protein liga | no | no | 0.081 | 0.240 | 0.279 | 1e-05 | |
| A2ZLU6 | 694 | Protein spotted leaf 11 O | N/A | no | 0.081 | 0.240 | 0.279 | 1e-05 | |
| Q8GWV5 | 760 | U-box domain-containing p | no | no | 0.048 | 0.130 | 0.34 | 2e-05 | |
| Q6C5Y8 | 573 | Vacuolar protein 8 OS=Yar | yes | no | 0.109 | 0.392 | 0.258 | 2e-05 | |
| Q5XEZ8 | 707 | U-box domain-containing p | no | no | 0.046 | 0.134 | 0.381 | 2e-05 | |
| B9DHT4 | 710 | ARM REPEAT PROTEIN INTERA | no | no | 0.094 | 0.274 | 0.259 | 3e-05 |
| >sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 49/269 (18%)
Query: 424 LSQWVSHAEAKKV--LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS 481
+S + S AEA K+ L+ + + + + L +R AI + I LL+
Sbjct: 342 VSSFSSPAEANKIEDLMWRLAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVG 401
Query: 482 LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLW 541
LL + QE++V + L+ +++K AI +AG IP +VQ+L+ GS +ARE AA L+
Sbjct: 402 LLSTPDSRIQEHSVTALLNLS-ICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLF 460
Query: 542 ILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMAL------------------- 582
L E+ + + + GA+P + LL G +G+ +A AL
Sbjct: 461 SLSVIDEN-KVTIGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVI 519
Query: 583 ---TKLIRAADSATINQLLALL--LGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637
T+L+ S +++ LA+L L P KA ++G ++
Sbjct: 520 PTLTRLLTEPGSGMVDEALAILAILSSHPEGKA----IIG-----------------SSD 558
Query: 638 GLRSLVQVLNSSNEENQEYAASVLADLFS 666
+ SLV+ + + + N+E AA+VL L S
Sbjct: 559 AVPSLVEFIRTGSPRNRENAAAVLVHLCS 587
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: - |
| >sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 108/210 (51%), Gaps = 13/210 (6%)
Query: 459 LCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGI 518
L +R V I + I LL++LL S + QE+AV + L+ +++K +I + I
Sbjct: 350 LAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIH-ENNKASIVDSHAI 408
Query: 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDAS 578
P +V++L+ GS + RE AA L+ L E+ + + +AGA+P + LL G P+G+ +
Sbjct: 409 PKIVEVLKTGSMETRENAAATLFSLSVVDEN-KVTIGAAGAIPPLINLLCDGSPRGKKDA 467
Query: 579 AMALTKL-------IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631
A A+ L +RA + + L+ L+ + + +L +L + +V
Sbjct: 468 ATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLS-ILAGNPEGKIV-- 524
Query: 632 GSAANKGLRSLVQVLNSSNEENQEYAASVL 661
A ++ + LV+V+ + + N+E AA++L
Sbjct: 525 -IARSEPIPPLVEVIKTGSPRNRENAAAIL 553
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Possesses E3 ubiquitin-protein ligase in vitro. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/276 (27%), Positives = 129/276 (46%), Gaps = 15/276 (5%)
Query: 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYA 494
K L+ + ++ D + L L + + IG I LL+ LL + QE A
Sbjct: 544 KKLVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENA 603
Query: 495 VQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554
V + L+ D++K AI AG I PL+ +LE GS +A+E +A L+ L E+ + +
Sbjct: 604 VTALLNLSIN-DNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEEN-KIKI 661
Query: 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKL-IRAADSATINQLLAL-----LLGDSPSS 608
+GA+ + LL +G P+G+ +A AL L I + A I Q A+ L+ +
Sbjct: 662 GQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPAAGM 721
Query: 609 KAHVIKVLGHVLTMALQEDLV-QKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667
+ VL ++ T+ + + Q+G G+ LV+V+ + +E AA+ L L +
Sbjct: 722 VDKAVAVLANLATIPEGRNAIGQEG-----GIPLLVEVVELGSARGKENAAAALLQLSTN 776
Query: 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARAL 703
C + + V P + L S T A + A+AL
Sbjct: 777 SGRFCNMVLQEGAVPPLVALSQSGTPR-AREKAQAL 811
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 39/262 (14%)
Query: 436 VLIGLITMAT-ADVREYLILSLTKL--CRREVG-IWEAIGKREGIQLLISLLGLSSEQHQ 491
+L+ L+T++ + +E+ + S+ L C+ G I + G GI + +L S + +
Sbjct: 401 LLVNLLTISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGI---VHVLQKGSMEAR 457
Query: 492 EYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551
E A + L+ +D++K I AAG IPPLV LL GSQ+ ++ AA L+ LC +
Sbjct: 458 ENAAATLFSLS-VIDENKVTIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKG 516
Query: 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL---------IRAADSATINQLLALLL 602
V AG VP + LL D S L L + AAD+ + L+ +
Sbjct: 517 KAVR-AGLVPVLMRLLTEPESGMVDESLSILAILSSHPDGKSEVGAADAVPV--LVDFIR 573
Query: 603 GDSPSSKAHVIKVLGHVLTMALQE--------------DLVQKGSAANKGLRSLVQVLN- 647
SP +K + VL H+ + Q ++ + G+ ++G R Q+LN
Sbjct: 574 SGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLIEMAENGT--DRGKRKAAQLLNR 631
Query: 648 --SSNEENQEYAASVLADLFSM 667
N++ ++++ L D S+
Sbjct: 632 FSRFNDQQKQHSGLGLEDQISL 653
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 19/186 (10%)
Query: 491 QEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI 550
QE+AV + L+ +D+K +I ++G +P +V +L+ GS +ARE AA L+ L E
Sbjct: 426 QEHAVTALLNLSIH-EDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDE-Y 483
Query: 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL----------IRAADSATINQLLAL 600
+ + GA+PA + LL G +G+ +A AL L IRA L+ L
Sbjct: 484 KVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAG-------LVPL 536
Query: 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660
++G + ++ +L++ + A + + LV+++ S N+E AA+V
Sbjct: 537 IMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAV 596
Query: 661 LADLFS 666
+ L S
Sbjct: 597 MLHLCS 602
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E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1. Oryza sativa subsp. japonica (taxid: 39947) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 19/186 (10%)
Query: 491 QEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI 550
QE+AV + L+ +D+K +I ++G +P +V +L+ GS +ARE AA L+ L E
Sbjct: 426 QEHAVTALLNLSIH-EDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDE-Y 483
Query: 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL----------IRAADSATINQLLAL 600
+ + GA+PA + LL G +G+ +A AL L IRA L+ L
Sbjct: 484 KVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAG-------LVPL 536
Query: 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660
++G + ++ +L++ + A + + LV+++ S N+E AA+V
Sbjct: 537 IMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAV 596
Query: 661 LADLFS 666
+ L S
Sbjct: 597 MLHLCS 602
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Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity. Oryza sativa subsp. indica (taxid: 39946) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 492 EYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551
+ AV L+A L+ V + + AI GGIP LV+ ++ GSQ+ +E AA VL LC +S
Sbjct: 655 DKAVALLANLS-AVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFC 713
Query: 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591
V GA+P + L +SG + ++ + L+ D+
Sbjct: 714 TLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDA 753
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Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|Q6C5Y8|VAC8_YARLI Vacuolar protein 8 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=VAC8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 105/236 (44%), Gaps = 11/236 (4%)
Query: 55 PQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD 114
P + T + IA + + L S + + I ++ SG+P + A L L D
Sbjct: 245 PDVQYYSTTALSNIAVDESNRKKLSSSEPRLVEHLIKLMDSGSPRVQCQAALALRNLASD 304
Query: 115 EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVP 174
D +L+++ +P L +L +S T AA + +S L++ + + G +
Sbjct: 305 SDYQLEIVKANGLPHLFNLFQSTHTPLVLAAVACIRNISIHPLNETPI-----IEAGFLK 359
Query: 175 TLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQS 234
TL + L + ++ +Q LRNL + +EAG V L+ QS
Sbjct: 360 TLVELLGASDNEE--IQCHTISTLRNLAASSERNKLEIVEAGAVQKCKELVLDAPRLVQS 417
Query: 235 NAASLLARLMLAFGDSIP-TVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK 289
+ LA +LA GD + T+++ G + L+ L +N I V+ ++A AL LSSK
Sbjct: 418 EMTACLA--VLALGDELKGTLLELGIAEVLIPLTLSDN-IEVQGNSAAALGNLSSK 470
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Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
| >sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 492 EYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551
E AV ++A L V + K AI GGIP LV+++E GS + +E A L LC HS
Sbjct: 604 EKAVVVLANLA-TVREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFC 662
Query: 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588
V G +P + L KSG +G++ A L K +A
Sbjct: 663 NNVIREGVIPPLVALTKSGTARGKE-KAQNLLKYFKA 698
|
Functions as an E3 ubiquitin ligase. Arabidopsis thaliana (taxid: 3702) EC: 6 EC: . EC: 3 EC: . EC: 2 EC: . EC: - |
| >sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana GN=ARIA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 101/212 (47%), Gaps = 17/212 (8%)
Query: 85 AMPLFISILR---SGTPLAKVN------VAATLSVLCKDEDLRLKVLLGGCIPPLLSLLK 135
A+P +++L+ G+ VN A ++ ++ ++ +V + G IPPL+ LL+
Sbjct: 149 ALPHLVNLLKRNKDGSSSRAVNSVIRRAADAITNLAHENSSIKTRVRVEGGIPPLVELLE 208
Query: 136 SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVT 195
+ ++AAA AL ++ +DD+ V +PTL L +D +
Sbjct: 209 FSDSKVQRAAAGALRTLAFK--NDDNKNQ--IVECNALPTLILMLG---SEDAAIHYEAV 261
Query: 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVI 255
G + NL + L AG + ++GLLSS +Q AA LL + D ++
Sbjct: 262 GVIGNLVHSSPHIKKEVLTAGALQPVIGLLSSCCPESQREAALLLGQFASTDSDCKVHIV 321
Query: 256 DSGAVKALVQLVGQNNDISVRASAADALEALS 287
GAV+ L++++ Q+ D+ ++ +A AL L+
Sbjct: 322 QRGAVRPLIEML-QSPDVQLKEMSAFALGRLA 352
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May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Acts as a positive regulator of ABA response via the modulation of the transcriptional activity of ABF2, a transcription factor which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. Negative regulator of seed germination and young seedling growth. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2054 | ||||||
| 225459601 | 2109 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.956 | 0.854 | 0.0 | |
| 356500376 | 2108 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.957 | 0.820 | 0.0 | |
| 356552701 | 2108 | PREDICTED: uncharacterized protein LOC10 | 0.982 | 0.957 | 0.817 | 0.0 | |
| 224084912 | 2106 | predicted protein [Populus trichocarpa] | 0.981 | 0.957 | 0.815 | 0.0 | |
| 255558634 | 2095 | ubiquitin-protein ligase, putative [Rici | 0.973 | 0.954 | 0.802 | 0.0 | |
| 449449757 | 2105 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.957 | 0.777 | 0.0 | |
| 449500671 | 2105 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.981 | 0.957 | 0.776 | 0.0 | |
| 302141793 | 2026 | unnamed protein product [Vitis vinifera] | 0.886 | 0.898 | 0.825 | 0.0 | |
| 297839607 | 2135 | C2 domain-containing protein [Arabidopsi | 0.988 | 0.951 | 0.695 | 0.0 | |
| 186496022 | 2136 | armadillo/beta-catenin-like repeat and C | 0.995 | 0.957 | 0.690 | 0.0 |
| >gi|225459601|ref|XP_002285869.1| PREDICTED: uncharacterized protein LOC100260874 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3425 bits (8881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1725/2019 (85%), Positives = 1875/2019 (92%), Gaps = 1/2019 (0%)
Query: 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFI 90
MDDPESTMS VA F+EQLHANMSSP E+ELIT R+L IA+A+K+AR LIG+H QAMPLFI
Sbjct: 1 MDDPESTMSRVAHFVEQLHANMSSPHEKELITARLLGIARARKDARTLIGTHVQAMPLFI 60
Query: 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
S+LRSGTP+AKVNVAATLSVLCKDEDLRLKVLLGGCIPPLL+LLKSEST+ RKAAAEALY
Sbjct: 61 SVLRSGTPVAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLALLKSESTEARKAAAEALY 120
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
EVSSGGLSDDHVGMKIFVTEGVVP LWDQLNPKNKQD VV+GFVTGALRNLCGDK+GYW+
Sbjct: 121 EVSSGGLSDDHVGMKIFVTEGVVPNLWDQLNPKNKQDKVVEGFVTGALRNLCGDKNGYWK 180
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
ATLEAGGVDIIVGLL SDNAAAQSNAASLLARLMLAF DSIP VIDSGAVKAL++L+GQ
Sbjct: 181 ATLEAGGVDIIVGLLYSDNAAAQSNAASLLARLMLAFSDSIPKVIDSGAVKALLRLLGQE 240
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
NDISVRASAADALEALSSKS +AKKAVV ADGVPVLIGAIVAPSKECMQG+ GQALQGHA
Sbjct: 241 NDISVRASAADALEALSSKSTRAKKAVVDADGVPVLIGAIVAPSKECMQGECGQALQGHA 300
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
TRALANI GGM AL++YLGELSQSPRLAAPVADIIGALAY+LMVFEQ+SGV++EPFD Q
Sbjct: 301 TRALANICGGMSALIMYLGELSQSPRLAAPVADIIGALAYSLMVFEQQSGVEEEPFDVTQ 360
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
IEDILVMLLKP DNKLVQERVLEA+ASLY N +LS+W++HAEAKKVLI LITMA AD +E
Sbjct: 361 IEDILVMLLKPRDNKLVQERVLEALASLYSNKYLSRWINHAEAKKVLIALITMAAADAQE 420
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
YLIL+LT LC VG+WEAIG REGIQLLISLLGLSSEQHQEYAVQL+AILT+QVDDSKW
Sbjct: 421 YLILALTSLCCDGVGLWEAIGMREGIQLLISLLGLSSEQHQEYAVQLLAILTDQVDDSKW 480
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
AITAAGGIPPLVQLLE GSQKARE AAHVLW LCCHSEDIRACVESAGAVPAFLWLLKSG
Sbjct: 481 AITAAGGIPPLVQLLEIGSQKAREDAAHVLWNLCCHSEDIRACVESAGAVPAFLWLLKSG 540
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
G KGQ+ASAMAL KL+R ADSATINQLLALLLGDSPSSKAH+I+VLGHVLTMA EDLV
Sbjct: 541 GLKGQEASAMALGKLVRTADSATINQLLALLLGDSPSSKAHIIRVLGHVLTMASHEDLVH 600
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
KGSAANKGL SLVQVLNSSNEE QEYAASVLADLFS RQDIC SLATDEIV+PCM+LLTS
Sbjct: 601 KGSAANKGLTSLVQVLNSSNEETQEYAASVLADLFSTRQDICDSLATDEIVHPCMKLLTS 660
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
TQ++ATQSARALGALSRPTK K TNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN
Sbjct: 661 KTQVIATQSARALGALSRPTKAKATNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 720
Query: 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF 810
LLSDP IAAE L EDVVSALTRVL EGTSEGKKNASRALHQLLKHFPVGDVL GNAQCRF
Sbjct: 721 LLSDPQIAAEALEEDVVSALTRVLGEGTSEGKKNASRALHQLLKHFPVGDVLTGNAQCRF 780
Query: 811 VVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCL 870
VL LVDSLN+MD++GTD ADALEVVALLAR KQ +NFTY PW+ALAEVPSS+E LV CL
Sbjct: 781 AVLALVDSLNSMDLDGTDAADALEVVALLARMKQSVNFTYSPWSALAEVPSSLESLVRCL 840
Query: 871 AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
AEGPP +QDKAIEILSRLCGDQP VLGD L+A+S SIG+LA+RIM+SSSLEVRVGG ALL
Sbjct: 841 AEGPPLVQDKAIEILSRLCGDQPVVLGDLLVAQSRSIGSLANRIMNSSSLEVRVGGTALL 900
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
ICAAKEHK+ +MDALD+SGYL+PLIYALVDMMKQNSSCSSL+IEVRTPRG+MERTAFQE
Sbjct: 901 ICAAKEHKQAAMDALDVSGYLRPLIYALVDMMKQNSSCSSLEIEVRTPRGFMERTAFQEG 960
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
+F+VPDPAT+LGGTVALWL+ II SF + +TVMEAG LEALS+KL SY SNPQAEFE
Sbjct: 961 IEFEVPDPATVLGGTVALWLISIICSFHAKSKITVMEAGGLEALSEKLTSYASNPQAEFE 1020
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
DTEGIWISAL LAILFQDAN+VL+PATMRIIP+LALL++SDEVIDRFFAAQAMASLVC+G
Sbjct: 1021 DTEGIWISALLLAILFQDANVVLAPATMRIIPSLALLMKSDEVIDRFFAAQAMASLVCNG 1080
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRV 1170
S+GI L IANSGAVAGLITLIG+IE D PNLVALSEEF LVR PD+VVLE LFEIED+RV
Sbjct: 1081 SRGINLTIANSGAVAGLITLIGYIELDMPNLVALSEEFCLVRKPDQVVLENLFEIEDIRV 1140
Query: 1171 GSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
GSTARKSIPLLVD+LRPIPDRPGAPP+AV+LLT+I DGSDTNKLIMAEAG LDALTKYLS
Sbjct: 1141 GSTARKSIPLLVDLLRPIPDRPGAPPIAVQLLTRIADGSDTNKLIMAEAGALDALTKYLS 1200
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF 1290
LSPQDS+EA+++EL RILFSNPDL+RYEAS+SSLNQLIAVL LGSR AR SAARALH+LF
Sbjct: 1201 LSPQDSSEASVSELLRILFSNPDLLRYEASISSLNQLIAVLRLGSRNARFSAARALHELF 1260
Query: 1291 DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLE 1350
DAENI+DS+LA QAV PLVDML+AASE E + ALVAL+KLT GN+SKA L+TD++GN LE
Sbjct: 1261 DAENIRDSELARQAVQPLVDMLNAASESEQQAALVALIKLTMGNSSKASLMTDVEGNPLE 1320
Query: 1351 SLYKI-LSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESA 1409
SLYKI SS SSLELK NAA+LCF++F KI A P+ASECI+PLI LMQS+ S VES+
Sbjct: 1321 SLYKILSSSTSSLELKGNAAQLCFVLFNIPKIRALPMASECIEPLILLMQSESSTAVESS 1380
Query: 1410 VCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMV 1469
VCAFERLLDDEQ VEL YD+VDL+V LVSG+NH+L+E ++CAL KLGKDRTP KL MV
Sbjct: 1381 VCAFERLLDDEQLVELAAAYDIVDLIVSLVSGSNHQLIETSICALTKLGKDRTPLKLDMV 1440
Query: 1470 KAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSL 1529
KAGIIDNCL+LLPVAPS+LCS+IAELFRILTNSSAI++ S AA+IVEPLFMVLL+PDFS+
Sbjct: 1441 KAGIIDNCLELLPVAPSSLCSSIAELFRILTNSSAISKGSAAARIVEPLFMVLLRPDFSM 1500
Query: 1530 WGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQE 1589
WGQHSALQALVNILEKPQSL TLKLTPSQVIEPL+SFLESPS AIQQLGTELL+HLLAQE
Sbjct: 1501 WGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQE 1560
Query: 1590 HFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQ 1649
HFQQDITTKNAVVPLVQLAGIGILNLQQTA+KALE IS SWPKAVADAGGIFE+AKVIIQ
Sbjct: 1561 HFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALENISISWPKAVADAGGIFELAKVIIQ 1620
Query: 1650 DDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHER 1709
DDPQPPH+LWESAALVLSNVLRFN EYYFKVP+VVLVKMLHSTLESTITVALNAL++HER
Sbjct: 1621 DDPQPPHALWESAALVLSNVLRFNAEYYFKVPLVVLVKMLHSTLESTITVALNALIVHER 1680
Query: 1710 TDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQY 1769
+D+S+AEQMT+AG IDALLDLLRSHQCEE +GRLLEALFNN R+R+MKVSKYAIAPLSQY
Sbjct: 1681 SDSSNAEQMTEAGAIDALLDLLRSHQCEEPAGRLLEALFNNVRVREMKVSKYAIAPLSQY 1740
Query: 1770 LLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICA 1829
LLDPQTRS+SG+LLAALALGDLSQHEGLARAS SVSACRALISLLEDQ T+EMKMVAICA
Sbjct: 1741 LLDPQTRSQSGRLLAALALGDLSQHEGLARASDSVSACRALISLLEDQPTEEMKMVAICA 1800
Query: 1830 LQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNEL 1889
LQNFVM SRTNRRAVAEAGGILVVQELLLS N++VA QAALL KFLFSNHTLQEYVSNEL
Sbjct: 1801 LQNFVMRSRTNRRAVAEAGGILVVQELLLSPNSDVAAQAALLIKFLFSNHTLQEYVSNEL 1860
Query: 1890 IRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAA 1949
IRSLTAALE+ELWSTATINEEVLRT++VIF NF KLH SEAATLCIPHLVGALKSGS+AA
Sbjct: 1861 IRSLTAALEKELWSTATINEEVLRTINVIFANFHKLHISEAATLCIPHLVGALKSGSDAA 1920
Query: 1950 QGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLP 2009
Q SVLDTLCLL++SWSTMPID+AKSQAMIAAEAIPILQMLMKTCPPSFH++ADSLLHCLP
Sbjct: 1921 QESVLDTLCLLKHSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHDKADSLLHCLP 1980
Query: 2010 GCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVI 2048
GCLTVTIKRGNNLKQ MG TNAFCRLTIGNGPPRQTKV+
Sbjct: 1981 GCLTVTIKRGNNLKQAMGGTNAFCRLTIGNGPPRQTKVV 2019
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500376|ref|XP_003519008.1| PREDICTED: uncharacterized protein LOC100796864 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3304 bits (8567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1656/2018 (82%), Positives = 1832/2018 (90%)
Query: 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFI 90
MDDPESTM+ VA F+EQLHAN+SSP E+E IT R+L IA+ +K+AR +IGSHAQAMPLFI
Sbjct: 1 MDDPESTMAKVANFVEQLHANLSSPVEKETITARLLGIARRRKDARAIIGSHAQAMPLFI 60
Query: 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
SILR+GTPLAKVNVA+TLSVLCKDEDLRLKVLLGGCIPPLLSLL ESTD RKAAAEA+Y
Sbjct: 61 SILRNGTPLAKVNVASTLSVLCKDEDLRLKVLLGGCIPPLLSLLNYESTDARKAAAEAIY 120
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
EVSSGGLSDDHVGMKIFVTEGVVPTLW+QLNPKNK+D +V+GF+TGALRNLCGDKDGYW+
Sbjct: 121 EVSSGGLSDDHVGMKIFVTEGVVPTLWNQLNPKNKEDKIVEGFITGALRNLCGDKDGYWK 180
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
ATLEAGGVDIIVGLLSSDNA +QSNAASLLARLMLAF DSIP VIDSGAVKAL+QLVGQ
Sbjct: 181 ATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGQE 240
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
NDISVRASAADALE LSSKS KAKK +V ADG+P+LIGAIVAPS ECMQG GQALQ HA
Sbjct: 241 NDISVRASAADALEVLSSKSTKAKKVIVNADGIPILIGAIVAPSNECMQGDGGQALQEHA 300
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
TRALANI GGM AL++YLGELS+SPR APV DIIGALAY LMVFE+K VD++ FDA Q
Sbjct: 301 TRALANICGGMSALILYLGELSRSPRPDAPVGDIIGALAYTLMVFEEKVDVDEKHFDATQ 360
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
IEDILV LLKP DNKL+QERVLEAMASLYGN+ LS+ + A++KKVLIGLITMA DV+E
Sbjct: 361 IEDILVTLLKPQDNKLIQERVLEAMASLYGNVCLSKCLIQADSKKVLIGLITMAATDVQE 420
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
YLILSLT LC ++G+WEAI KREGIQLLISLLGLSSEQHQEY+VQL+AILT+QVDDSKW
Sbjct: 421 YLILSLTSLCCDKIGVWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTDQVDDSKW 480
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
AITAAGGIPPLVQLLE GSQKARE AA+VLW LCCHSEDIRACVESAGA+PAFLWLLKSG
Sbjct: 481 AITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSG 540
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
GPKGQ ASAMALTKL+R ADSA INQLLALLLGDSPSSKAH+I+VLGHVLTMA Q DL++
Sbjct: 541 GPKGQQASAMALTKLVRVADSAAINQLLALLLGDSPSSKAHIIRVLGHVLTMASQNDLLE 600
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
KGS ANKGLRSLVQVLNSSNEE QEYAASVLADLF RQDIC SLATDEIV PCM+LLTS
Sbjct: 601 KGSVANKGLRSLVQVLNSSNEETQEYAASVLADLFIARQDICDSLATDEIVLPCMKLLTS 660
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
TQ+VATQSAR L ALSRPTK K NKMSYI EGDVKPLIKLAKTSS+DAAETAVAALAN
Sbjct: 661 KTQVVATQSARVLSALSRPTKNKAANKMSYIVEGDVKPLIKLAKTSSVDAAETAVAALAN 720
Query: 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF 810
LL DP IAAE L EDVVSAL RVLAEGT EGK+NASRALHQLLKHFPVGDVLKGN QCRF
Sbjct: 721 LLFDPFIAAEALAEDVVSALARVLAEGTLEGKQNASRALHQLLKHFPVGDVLKGNTQCRF 780
Query: 811 VVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCL 870
VL LVDSL AMDM+GTD ADALEV+ALLARTKQG+N+TYPPW+ALAE+PSS+E LVCCL
Sbjct: 781 TVLALVDSLRAMDMDGTDAADALEVIALLARTKQGVNYTYPPWSALAEMPSSLELLVCCL 840
Query: 871 AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
AEG +Q+KAI+ILSRLCGDQP VLGD L A S SIG+LA+RIM+SSSLEV++GG+ALL
Sbjct: 841 AEGHSLVQEKAIKILSRLCGDQPVVLGDLLSASSKSIGSLANRIMNSSSLEVKIGGSALL 900
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
ICAAKE KK SMD+LD SG+LKPLIY+LV+M+KQ+ S S L+IEV +G+MER++FQE
Sbjct: 901 ICAAKEKKKLSMDSLDASGFLKPLIYSLVEMIKQSCSYSLLEIEVVASKGFMERSSFQEV 960
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
D+FD+PDPAT LG T+A+WLL +I+SF + +T+MEAG LEALSDKL+ +TSNPQAE+E
Sbjct: 961 DEFDIPDPATALGSTIAMWLLSVIASFHIKSKLTIMEAGGLEALSDKLSRHTSNPQAEYE 1020
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
DTEG WI+AL LAILFQDAN++LSP TMRIIP++ALLLRSDEVID++FAAQ+MASLVC+G
Sbjct: 1021 DTEGTWINALLLAILFQDANVILSPVTMRIIPSIALLLRSDEVIDKYFAAQSMASLVCNG 1080
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRV 1170
+KGI LAIANSGAVAGLIT+IGH+ESD PNL+ALSEEF LV+ PD+VVL+ LFEIEDV+V
Sbjct: 1081 NKGIDLAIANSGAVAGLITIIGHVESDMPNLMALSEEFSLVQNPDQVVLDHLFEIEDVKV 1140
Query: 1171 GSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
GSTARKSIPLLVD+LRPIP+RP APPVAVRLL I DGSD+NKLI+AEAG L+AL KYLS
Sbjct: 1141 GSTARKSIPLLVDLLRPIPERPTAPPVAVRLLICIADGSDSNKLILAEAGALEALNKYLS 1200
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF 1290
LSPQDSTEA I+EL RILFSN DLI++EAS +SLNQLIAVL LGSR AR SAARALH+LF
Sbjct: 1201 LSPQDSTEAAISELLRILFSNSDLIKHEASTNSLNQLIAVLRLGSRNARYSAARALHELF 1260
Query: 1291 DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLE 1350
DA+NI+DS+LA Q + PLVDML+ S E E AL+AL+KLTSGN+SK LL D++GN L+
Sbjct: 1261 DADNIRDSELAKQGIQPLVDMLNTTSGNEQEAALMALIKLTSGNSSKVSLLLDVEGNPLK 1320
Query: 1351 SLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410
LYKILSS SSLELK +AA+LCF +FGN+KI A+P+ASEC++P ISLMQSD +ES V
Sbjct: 1321 CLYKILSSASSLELKSHAAQLCFALFGNSKIRADPVASECLEPFISLMQSDSETAIESGV 1380
Query: 1411 CAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVK 1470
CAFERLL+DEQQVEL Y+VV LLV LVSGTN++L+EA + LIKLGKDRTP KL MVK
Sbjct: 1381 CAFERLLEDEQQVELAAAYNVVYLLVSLVSGTNYQLIEAAISTLIKLGKDRTPIKLDMVK 1440
Query: 1471 AGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
AGIIDNCL LL +APS+LCSTIAELFRILTNSSAIARSSDAAKIVEPLF VLL+ DF+LW
Sbjct: 1441 AGIIDNCLKLLQLAPSSLCSTIAELFRILTNSSAIARSSDAAKIVEPLFHVLLRRDFNLW 1500
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEH 1590
GQHSALQALVNILEKPQSL TLKLTPSQVIEPL+SFLESPS AIQQLGTELL+HLLAQEH
Sbjct: 1501 GQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEH 1560
Query: 1591 FQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQD 1650
FQQDITTKNAVVPLVQLAGIGILNLQQTA+KALEKISTSWPKAVADAGGIFE+AKVIIQ+
Sbjct: 1561 FQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQE 1620
Query: 1651 DPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERT 1710
DPQPPH+LWESAALVLSNVL N +YYFKVPVVVLVK+LHSTLESTI++ALNAL++H+R+
Sbjct: 1621 DPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLESTISIALNALIVHDRS 1680
Query: 1711 DASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYL 1770
DASSAEQM +AGVIDALLDLLRSH CEE SGRLLEALFNN R+R+MKVSKYAIAPLSQYL
Sbjct: 1681 DASSAEQMMEAGVIDALLDLLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYL 1740
Query: 1771 LDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICAL 1830
LDPQTRS+SGKLLAALALGDLSQHEG AR+SASVSACRALISLLEDQ T+EMK+VAICAL
Sbjct: 1741 LDPQTRSQSGKLLAALALGDLSQHEGHARSSASVSACRALISLLEDQPTEEMKVVAICAL 1800
Query: 1831 QNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELI 1890
QNFVM SRTNRRAVAEAGGILV+QELLLS N EVA QAALL KFLFS HTLQEYVSNELI
Sbjct: 1801 QNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVAAQAALLIKFLFSTHTLQEYVSNELI 1860
Query: 1891 RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQ 1950
RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSG EAAQ
Sbjct: 1861 RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQ 1920
Query: 1951 GSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPG 2010
SVLDT CLLR SWSTMPID+AKSQAMIAAEAIPILQMLMKTCPPSFHERAD+LLHCLPG
Sbjct: 1921 DSVLDTFCLLRQSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPG 1980
Query: 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVI 2048
CLTVTIKRGNNLKQTMG+TNAFCRLTIGNGPP+QTKV+
Sbjct: 1981 CLTVTIKRGNNLKQTMGSTNAFCRLTIGNGPPKQTKVV 2018
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552701|ref|XP_003544701.1| PREDICTED: uncharacterized protein LOC100780150 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3294 bits (8541), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1650/2018 (81%), Positives = 1833/2018 (90%)
Query: 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFI 90
MDDPESTM+TVA F+EQLHAN+SSP E+E+IT +L +A+ +K+AR LIGSHAQAMPLFI
Sbjct: 1 MDDPESTMATVANFVEQLHANLSSPVEKEIITAHLLGMARRRKDARALIGSHAQAMPLFI 60
Query: 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
SILR+GTPLAKVNVA+TLSVLCKDEDLRLKVLLGGCIPPLLSLL ESTD RKAAAEA+Y
Sbjct: 61 SILRNGTPLAKVNVASTLSVLCKDEDLRLKVLLGGCIPPLLSLLNYESTDARKAAAEAIY 120
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
EVSSGGLSDDHVGMKIFVTEGVVPTLW+QLNPKNK+D +V+GF+TGALRNLCGDKDGYW+
Sbjct: 121 EVSSGGLSDDHVGMKIFVTEGVVPTLWNQLNPKNKEDKIVEGFITGALRNLCGDKDGYWK 180
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
ATLEAGGVDIIVGLLSSDNA +QSNAASLLARLMLAF DSIP VIDSGAVKAL+QLVGQ
Sbjct: 181 ATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVKALLQLVGQE 240
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
NDISVRASAADALEALSS+S KAKK +V ADG+P+LI AIVAPS ECMQG GQALQ HA
Sbjct: 241 NDISVRASAADALEALSSQSTKAKKVIVNADGIPILIAAIVAPSNECMQGDGGQALQEHA 300
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
TRALANI GGM AL++YLGELS+SPR +PV DIIGALAY LMVFE+K VD++ F A Q
Sbjct: 301 TRALANICGGMSALILYLGELSRSPRPDSPVGDIIGALAYTLMVFEEKVDVDEKHFGATQ 360
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
IEDILV LLKP DN L+QERVLEAMASLYGN+ LS+W+ A++KKVLIGLITMA DV+E
Sbjct: 361 IEDILVTLLKPWDNNLIQERVLEAMASLYGNVCLSKWLIQADSKKVLIGLITMAATDVQE 420
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
YLILSLT LC ++G+WEAI KREGIQLLISLLGLSSEQHQEY+VQL+AILT+QVDDSKW
Sbjct: 421 YLILSLTSLCCDKIGLWEAIKKREGIQLLISLLGLSSEQHQEYSVQLLAILTDQVDDSKW 480
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
AITAAGGIPPLVQLLE GSQKARE AA+VLW LCCHSEDIRACVESAGA+PAFLWLLKSG
Sbjct: 481 AITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFLWLLKSG 540
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
GP+GQ+ASAMALTKL+R ADSATINQLLALLLG SPSSK H+I+VLGHVLTMA Q DL++
Sbjct: 541 GPRGQEASAMALTKLVRVADSATINQLLALLLGHSPSSKTHIIRVLGHVLTMASQNDLLE 600
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
KGSAANKGLRSLVQVLNSSNEE QEYAASVLADLF RQDIC SLATDEIV PC++LLTS
Sbjct: 601 KGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFITRQDICDSLATDEIVLPCVKLLTS 660
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
TQ+VATQSARAL ALSRPTK K NKMSYI EGDVKPLIKLAKTSS+DAAETAVAALAN
Sbjct: 661 KTQVVATQSARALSALSRPTKNKAANKMSYIVEGDVKPLIKLAKTSSVDAAETAVAALAN 720
Query: 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF 810
LL DP IAAE L EDVVSALTRVLAEGT EGK+NASRALHQLLKHFPVGDVLKGNAQC F
Sbjct: 721 LLFDPFIAAEALAEDVVSALTRVLAEGTLEGKRNASRALHQLLKHFPVGDVLKGNAQCCF 780
Query: 811 VVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCL 870
VL LVDSL AMDM+GTD ADALEV+ALLARTKQG+NFTYPPW+ALAE+PSS+E LVC L
Sbjct: 781 TVLALVDSLRAMDMDGTDAADALEVIALLARTKQGVNFTYPPWSALAEIPSSLELLVCFL 840
Query: 871 AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
AEG +QDKAI+ILSRLCGDQP VLG+ L A S SIG+LA+RIM+SSSLEV++GG++LL
Sbjct: 841 AEGHSLVQDKAIKILSRLCGDQPVVLGELLSASSKSIGSLANRIMNSSSLEVKIGGSSLL 900
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
ICAAKE K+ SMD+LD SGYLKPLIY+LV+M+KQN S SSL+IEV T +G+MER +FQE
Sbjct: 901 ICAAKEKKEFSMDSLDASGYLKPLIYSLVEMIKQNCSYSSLEIEVVTSKGFMERNSFQEV 960
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
D+FD+PDPAT LG T+A+WLL +I+SF + +T+MEAG LEAL DKLA +TSNPQAE+E
Sbjct: 961 DEFDIPDPATSLGSTIAMWLLSVIASFHIKSKLTIMEAGGLEALFDKLARHTSNPQAEYE 1020
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
DTEGIWI+AL LAILFQD N++LSP TMRIIP++ LLLRSDEVID++FAAQ MASLVC+G
Sbjct: 1021 DTEGIWINALLLAILFQDENVILSPVTMRIIPSITLLLRSDEVIDKYFAAQTMASLVCNG 1080
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRV 1170
+KGI LAIANSGAVAGLIT+IGH+ESD PNL+ALSEEF LV+ PD+VVL+ LFEIEDV+V
Sbjct: 1081 NKGIDLAIANSGAVAGLITIIGHVESDMPNLMALSEEFSLVQNPDQVVLDHLFEIEDVKV 1140
Query: 1171 GSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
GSTARKSIPLLVD+LRPIP+RP APPVAVRLL I DGSD+NKLI+AEAG L+AL KYLS
Sbjct: 1141 GSTARKSIPLLVDLLRPIPERPSAPPVAVRLLLSIADGSDSNKLILAEAGALEALNKYLS 1200
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF 1290
LSPQDSTEA I+EL RILF N DLI++EAS +SLNQLIAVL LGSR AR SAARALH+LF
Sbjct: 1201 LSPQDSTEAAISELLRILFCNSDLIKHEASTNSLNQLIAVLRLGSRNARYSAARALHELF 1260
Query: 1291 DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLE 1350
DA NI+DS+LA QA+ PLVDML+ S E E AL+AL+KLTSGN+SK LLTD++GN L+
Sbjct: 1261 DAGNIRDSELAKQAIQPLVDMLNTTSGNEQEAALMALIKLTSGNSSKVSLLTDVEGNPLK 1320
Query: 1351 SLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410
LYKILSS SSLELK +AA+LCF +FGN+KI A+P+ASEC++P ISLMQS+ + S V
Sbjct: 1321 CLYKILSSASSLELKSHAAQLCFALFGNSKIRADPVASECLEPFISLMQSNSETAIVSGV 1380
Query: 1411 CAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVK 1470
CAFERLL+DEQQVEL Y+VVDLLV LVSGTN++L+EA + LIKLGKDRTP KL MVK
Sbjct: 1381 CAFERLLEDEQQVELAAAYNVVDLLVSLVSGTNYQLIEAAISTLIKLGKDRTPIKLDMVK 1440
Query: 1471 AGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
AGII+NCL+LL +APS+LCSTIAELFRILTNSSAIARSSDAA+IVEPLF VLL+ DF+LW
Sbjct: 1441 AGIINNCLNLLQLAPSSLCSTIAELFRILTNSSAIARSSDAAEIVEPLFHVLLRRDFNLW 1500
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEH 1590
GQHSALQALVNILEKPQSL TLKLTPSQVIEPL+SFLESPS AIQQLGTELL+HLLAQEH
Sbjct: 1501 GQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEH 1560
Query: 1591 FQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQD 1650
FQQDITTKNAVVPLVQLAGIGILNLQQTA+KALEKISTSWPKAVADAGGIFE+AKVIIQD
Sbjct: 1561 FQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQD 1620
Query: 1651 DPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERT 1710
+PQPPH+LWESAALVLSNVL N +YYFKVPVVVLVK+LHSTLESTI++ALNAL++H+R+
Sbjct: 1621 EPQPPHALWESAALVLSNVLHSNADYYFKVPVVVLVKLLHSTLESTISIALNALIVHDRS 1680
Query: 1711 DASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYL 1770
DASSAEQM +AGVIDALL+LLRSH CEE SGRLLEALFNN R+R+MKVSKYAIAPLSQYL
Sbjct: 1681 DASSAEQMMEAGVIDALLELLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYL 1740
Query: 1771 LDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICAL 1830
LDPQTRS+SGKLLAALALGDLSQHEG AR+SASVSACRALISLLEDQ T+EMK+VAICAL
Sbjct: 1741 LDPQTRSQSGKLLAALALGDLSQHEGHARSSASVSACRALISLLEDQPTEEMKVVAICAL 1800
Query: 1831 QNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELI 1890
QNFVM SRTNRRAVAEAGGILV+QELLLS N EV+ QAALL KFLFS HTLQEYVSNELI
Sbjct: 1801 QNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEVSAQAALLIKFLFSTHTLQEYVSNELI 1860
Query: 1891 RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQ 1950
RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSG EAAQ
Sbjct: 1861 RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGGEAAQ 1920
Query: 1951 GSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPG 2010
SVLDT CLLR SWSTMPID+AKSQAMIAAEAIPILQMLMKTCPPSFHERAD+LLHCLPG
Sbjct: 1921 DSVLDTFCLLRQSWSTMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADTLLHCLPG 1980
Query: 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVI 2048
CLTVTIKRGNNLKQTMG+TNAFCRLTIGNGPP+QTKV+
Sbjct: 1981 CLTVTIKRGNNLKQTMGSTNAFCRLTIGNGPPKQTKVV 2018
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224084912|ref|XP_002307446.1| predicted protein [Populus trichocarpa] gi|222856895|gb|EEE94442.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3279 bits (8501), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1648/2020 (81%), Positives = 1808/2020 (89%), Gaps = 3/2020 (0%)
Query: 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFI 90
MDD E TM+ VA+F+E+LH+ +SSP E+EL+T R+L +AKA+KEAR +IGSHAQAMPLFI
Sbjct: 1 MDDSEDTMAVVARFIEKLHSRISSPPEKELVTARLLRLAKARKEARAVIGSHAQAMPLFI 60
Query: 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
SILRSGT AKVNVA+TLS LCKD+DLR+KVLLGGCIPPLLSLLKSES + RKAAAEA+Y
Sbjct: 61 SILRSGTSGAKVNVASTLSALCKDDDLRVKVLLGGCIPPLLSLLKSESIEARKAAAEAIY 120
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
EVSSG +SDD VG+KIF TEGV PTLW+QLNPKNKQD VVQGFVTGALRNLCGDKD YWR
Sbjct: 121 EVSSGSVSDDQVGIKIFATEGVTPTLWEQLNPKNKQDKVVQGFVTGALRNLCGDKDNYWR 180
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
A LEAGGVDIIVGLLSSDNA AQSNAASLLARLMLAFGDSIP VIDSGAV+AL+QLVGQN
Sbjct: 181 AMLEAGGVDIIVGLLSSDNATAQSNAASLLARLMLAFGDSIPKVIDSGAVRALLQLVGQN 240
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
NDISVRASAADALEALSSKS KAK+A+V ADGVP+LIGAIVAPSKECMQG+ GQALQGHA
Sbjct: 241 NDISVRASAADALEALSSKSTKAKEAIVDADGVPILIGAIVAPSKECMQGEFGQALQGHA 300
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
TRALANI GGM AL++YLGELSQSPRLAAPVADIIGALAYALMVFE+ + +E FDA +
Sbjct: 301 TRALANICGGMSALILYLGELSQSPRLAAPVADIIGALAYALMVFEKNAATAEETFDATK 360
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
IEDILV LLKP DNKLVQERVLEAMASLYGNI+LS + +AEAKKVLIGLITMA D +E
Sbjct: 361 IEDILVKLLKPRDNKLVQERVLEAMASLYGNIYLSICLDYAEAKKVLIGLITMAVGDPQE 420
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
YLILSLT LC VGIW+AIGKREGIQLLISLLGLSSEQHQEY V+ +AILT+QVDDSKW
Sbjct: 421 YLILSLTSLCCGGVGIWDAIGKREGIQLLISLLGLSSEQHQEYGVRFLAILTDQVDDSKW 480
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
AITAAGGIPPLVQLLEAGSQKARE AAH+LW LCCHSEDIRACVESAGAVPAFLWLLKSG
Sbjct: 481 AITAAGGIPPLVQLLEAGSQKAREDAAHILWNLCCHSEDIRACVESAGAVPAFLWLLKSG 540
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
GPKGQ+ASAMALT+L++ ADS TINQLLALLLGDS SKA+ I+VLGHVLTMA +DLVQ
Sbjct: 541 GPKGQEASAMALTRLVQTADSTTINQLLALLLGDSSGSKAYAIRVLGHVLTMASHKDLVQ 600
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
+GSAAN+ LRSL+Q+LNSS+EE QE AASVLADLF+ RQDIC SLATDEIV+PCM+LLTS
Sbjct: 601 RGSAANQALRSLIQILNSSDEETQESAASVLADLFTTRQDICDSLATDEIVHPCMKLLTS 660
Query: 691 -NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA 749
NTQ+VATQ ARALGALSRPTKTK+T KM YIAEGDVKPLIKLAKT SIDAAETA+AALA
Sbjct: 661 NNTQVVATQLARALGALSRPTKTKSTMKMPYIAEGDVKPLIKLAKT-SIDAAETAIAALA 719
Query: 750 NLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCR 809
NLLSDP IAAE L EDVV ALTRVL EGTSEGKKNASRALHQLL HFPVGDVL GNAQCR
Sbjct: 720 NLLSDPQIAAEALAEDVVGALTRVLGEGTSEGKKNASRALHQLLIHFPVGDVLGGNAQCR 779
Query: 810 FVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCC 869
F VL ++DSLN+M M+GTD+ DALEVVALL R K G+NFTY P A L EVPSS++PL
Sbjct: 780 FSVLAILDSLNSMGMDGTDITDALEVVALLVRMKHGVNFTYLPRAVLLEVPSSLDPLARL 839
Query: 870 LAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAAL 929
LAEGPP LQDKAIEILS+LCGDQP VLGD L+ARS SI +LA+RI++SSSLEV++GG L
Sbjct: 840 LAEGPPLLQDKAIEILSQLCGDQPGVLGDLLIARSRSIDSLANRIINSSSLEVKIGGITL 899
Query: 930 LICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQE 989
LICAAKEH +QS++ALD+SGYLKPLIYALV++MKQN+ SSL+++VRTPRG+ ER+AFQE
Sbjct: 900 LICAAKEHTQQSVEALDVSGYLKPLIYALVNIMKQNTCYSSLEMQVRTPRGFFERSAFQE 959
Query: 990 ADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEF 1049
D+FDV DP +LGGTVALWLL IISS + + VMEAG LEALSD+L SYTS PQAEF
Sbjct: 960 GDEFDVLDPVIVLGGTVALWLLSIISSIYAKSKLIVMEAGGLEALSDRLFSYTSTPQAEF 1019
Query: 1050 EDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCS 1109
EDTEGIWISAL LA LFQD NIVLSP TM IIP+LA L+RSDEVID+FFAAQAMASLVC+
Sbjct: 1020 EDTEGIWISALLLAFLFQDPNIVLSPTTMHIIPSLAHLMRSDEVIDKFFAAQAMASLVCN 1079
Query: 1110 GSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVR 1169
GSKGI L IANSGAVAGLITLIG IE D PNLVALSEEF LVR PD+V+LE LFEIEDVR
Sbjct: 1080 GSKGISLTIANSGAVAGLITLIGFIELDMPNLVALSEEFSLVRSPDQVILEHLFEIEDVR 1139
Query: 1170 VGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYL 1229
GSTARKSIPLLVD+LRPIPDRPGAPP+AV+LL+++ +GSD NKLIMAEAG LDALTKYL
Sbjct: 1140 FGSTARKSIPLLVDLLRPIPDRPGAPPIAVQLLSRLAEGSDANKLIMAEAGALDALTKYL 1199
Query: 1230 SLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL 1289
SLSPQDSTEA+I+EL RILFSNPDLIRYEAS SSLNQLIAVL LGSR AR SAARALH+L
Sbjct: 1200 SLSPQDSTEASISELLRILFSNPDLIRYEASFSSLNQLIAVLRLGSRDARFSAARALHEL 1259
Query: 1290 FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLL 1349
FDAE+I+DS+LA QAV PL+DML+AASE E E AL AL+KL SG+ SK L D++GN L
Sbjct: 1260 FDAESIRDSELAWQAVQPLIDMLNAASESEQEAALFALIKLISGHNSKRTLFVDVEGNPL 1319
Query: 1350 ESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESA 1409
ESLYKILSS SSLELKRNAAELC I+F NAK +NPIASECIQPLISL+QSD + VVES
Sbjct: 1320 ESLYKILSSASSLELKRNAAELCSILFSNAKFRSNPIASECIQPLISLIQSDNTAVVESV 1379
Query: 1410 VCAFERLLDDEQQVELVEGY-DVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQM 1468
VCAFERLLDDE +VEL Y ++VDLLV LVSGTN RL+E ++ ALIKLGKDR PRKL M
Sbjct: 1380 VCAFERLLDDEPKVELAAAYANIVDLLVGLVSGTNLRLIEGSISALIKLGKDRAPRKLDM 1439
Query: 1469 VKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFS 1528
VKAGIID CL LLP+ PS+LCS IAELFRILTNS AIARSSDAAK+VEPLFMVLL+PDF
Sbjct: 1440 VKAGIIDKCLVLLPIVPSSLCSAIAELFRILTNSGAIARSSDAAKVVEPLFMVLLRPDFG 1499
Query: 1529 LWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ 1588
LWGQHSALQALVNILEKPQSL TLKLTPSQVIEPL+SFLESPS AIQQLGTELL+HLLAQ
Sbjct: 1500 LWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQ 1559
Query: 1589 EHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVII 1648
EHFQQDITTKNAVVPLVQLAGIGILNLQQTA+KALEKIS SWPK VADAGGIFE+AKVII
Sbjct: 1560 EHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISISWPKVVADAGGIFELAKVII 1619
Query: 1649 QDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHE 1708
QDDPQPP LWE+AALVLSNVLR N EYYFKVP+VVLVKMLHST ESTI VALN L++HE
Sbjct: 1620 QDDPQPPVELWETAALVLSNVLRVNAEYYFKVPMVVLVKMLHSTCESTIKVALNGLIVHE 1679
Query: 1709 RTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQ 1768
RTDASSAEQMT+AGVID+LL+LLRSHQCEE SG LLEALFN+ R+R+ K SKYAIAPLSQ
Sbjct: 1680 RTDASSAEQMTEAGVIDSLLNLLRSHQCEELSGTLLEALFNHIRVREKKASKYAIAPLSQ 1739
Query: 1769 YLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAIC 1828
YLLDPQTRSE+ + LAALALGDLSQ EGLARAS SVSACRAL+SLLEDQ ++ M MVA+C
Sbjct: 1740 YLLDPQTRSETCRFLAALALGDLSQQEGLARASDSVSACRALVSLLEDQPSEAMTMVAVC 1799
Query: 1829 ALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNE 1888
ALQNFVM SRTNRRAVAEAGGILVVQELLLS +A+VAGQAA+L + LFSNHTLQEYVSNE
Sbjct: 1800 ALQNFVMHSRTNRRAVAEAGGILVVQELLLSPSADVAGQAAMLIELLFSNHTLQEYVSNE 1859
Query: 1889 LIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEA 1948
LIRSLTAALERELWSTATIN + LRTL+VIF NFPKLH SEAATLCIPHLV ALKSGSEA
Sbjct: 1860 LIRSLTAALERELWSTATINVQFLRTLNVIFANFPKLHVSEAATLCIPHLVNALKSGSEA 1919
Query: 1949 AQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCL 2008
AQ SVLDTLCLL+ SWSTM ID+AKSQAMIAAEAIPILQMLMKTCPPSFHERAD LLHCL
Sbjct: 1920 AQESVLDTLCLLKQSWSTMSIDIAKSQAMIAAEAIPILQMLMKTCPPSFHERADLLLHCL 1979
Query: 2009 PGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVI 2048
PG LTVTI RGNNLKQ MGTTNAFCRLTIGNGPPRQTKV+
Sbjct: 1980 PGSLTVTINRGNNLKQAMGTTNAFCRLTIGNGPPRQTKVV 2019
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558634|ref|XP_002520342.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223540561|gb|EEF42128.1| ubiquitin-protein ligase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3210 bits (8323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1627/2027 (80%), Positives = 1804/2027 (88%), Gaps = 27/2027 (1%)
Query: 25 SNGTSAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQ 84
SNGT DDPE+T++TVA+F+E+LHA +SSP E+ELIT R+ ++AKA KEAR +IGSH Q
Sbjct: 6 SNGTPEKDDPENTVATVARFVEKLHAKISSPHEKELITARLQSLAKANKEARTVIGSHVQ 65
Query: 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKA 144
AMPLFISILRSGTP AKV VA LSVLCK++DLRLKVLLGGCIPPLLSLLKSE+ D RKA
Sbjct: 66 AMPLFISILRSGTPGAKVYVAGILSVLCKEDDLRLKVLLGGCIPPLLSLLKSEAIDARKA 125
Query: 145 AAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204
AAEA+YEVSSGGLSDDHVG+KIFVTEGVVPTLWDQLNP+N QD VV+GFVTGALRNLCGD
Sbjct: 126 AAEAIYEVSSGGLSDDHVGIKIFVTEGVVPTLWDQLNPQNNQDKVVEGFVTGALRNLCGD 185
Query: 205 KDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALV 264
KD YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAF DSIP VIDSGA+KAL+
Sbjct: 186 KDDYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFSDSIPKVIDSGAIKALL 245
Query: 265 QLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQ 324
QLVGQNNDISVRASAADALE LSS+SIKAKKAVV A+GV VLIGA+V+PSKECMQG+ Q
Sbjct: 246 QLVGQNNDISVRASAADALEILSSRSIKAKKAVVDANGVHVLIGAVVSPSKECMQGESAQ 305
Query: 325 ALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDE 384
ALQGH+TRALANI GGM AL++YLGELS SPRLA P+ADIIGALAYALMVFEQ G+D+E
Sbjct: 306 ALQGHSTRALANICGGMSALILYLGELSHSPRLAEPIADIIGALAYALMVFEQDRGIDEE 365
Query: 385 PFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA 444
FDA IE+ILV LLKP D KL+QER+LEAMASLYGN+ LS+ ++HAEAKKVLIGLITMA
Sbjct: 366 NFDATNIENILVKLLKPRDTKLIQERILEAMASLYGNVHLSRSLNHAEAKKVLIGLITMA 425
Query: 445 TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504
AD +E LI+ LT LCR VGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQL+AILT+Q
Sbjct: 426 VADAKESLIIYLTNLCRDGVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLLAILTDQ 485
Query: 505 VDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564
VDDSKWAITAAGGIPPLVQLLE GSQ+ARE AAHVLW LCCHSEDIRACVESAGAVPA L
Sbjct: 486 VDDSKWAITAAGGIPPLVQLLETGSQRAREDAAHVLWNLCCHSEDIRACVESAGAVPALL 545
Query: 565 WLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL 624
WLL+SG KGQ+AS AL L+R ADSATINQLLALLLGDS SKA++I+VLGHVLTM
Sbjct: 546 WLLRSGELKGQEASVKALKTLVRTADSATINQLLALLLGDSSGSKAYIIRVLGHVLTMTP 605
Query: 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPC 684
+DLV +GSAANK L+SL+QVLNSSNEE QEYAAS+LADLFS RQDIC SLATDEI++PC
Sbjct: 606 LKDLVHRGSAANKALKSLIQVLNSSNEETQEYAASILADLFSTRQDICDSLATDEILHPC 665
Query: 685 MRLLT-SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743
M+LLT +NTQ+VATQ ARAL ALSR TKTKTTNKM YIAEGDVKPLIKLAKTSSIDAAET
Sbjct: 666 MKLLTGNNTQVVATQLARALSALSRSTKTKTTNKMPYIAEGDVKPLIKLAKTSSIDAAET 725
Query: 744 AVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLK 803
AVAALAN+LSDP IAAE L EDVV+ALTRVL EGTSEGKKNASRALHQLLKHFPVGDVLK
Sbjct: 726 AVAALANILSDPQIAAEALAEDVVTALTRVLGEGTSEGKKNASRALHQLLKHFPVGDVLK 785
Query: 804 GNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSI 863
GNAQCRF VL ++DSLNAMDM+G D DALEVVALLARTKQG + YPPWAALAEVPSS+
Sbjct: 786 GNAQCRFTVLAILDSLNAMDMHGIDTVDALEVVALLARTKQGASVAYPPWAALAEVPSSL 845
Query: 864 EPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVR 923
E LV CLAEG P LQDKAIEILSRLCG+QPAVLGD L+AR+ SIG+LA+RIM+SS+LEVR
Sbjct: 846 ESLVYCLAEGAPLLQDKAIEILSRLCGEQPAVLGDLLIARARSIGSLANRIMNSSTLEVR 905
Query: 924 VGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYME 983
+GG ALLICAAKEHK+QSM+ALDLSGYLKPLIYALVDM+KQNS SL+IEVR PRG+++
Sbjct: 906 IGGTALLICAAKEHKQQSMEALDLSGYLKPLIYALVDMIKQNSGSLSLEIEVRAPRGFLK 965
Query: 984 RTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTS 1043
R +F+E D+FDV DPAT+LGGT+ALWLL IISSF + + VMEAG LEA S KL+SYTS
Sbjct: 966 RPSFEEGDEFDVLDPATLLGGTIALWLLSIISSFHAKHKLIVMEAGGLEAFSSKLSSYTS 1025
Query: 1044 NPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAM 1103
N QA++EDTEGIWISALFLAILFQDA IVLSP TMRIIP+LA LLRSDE+IDRFFAAQAM
Sbjct: 1026 NTQADYEDTEGIWISALFLAILFQDATIVLSPTTMRIIPSLAHLLRSDEMIDRFFAAQAM 1085
Query: 1104 ASLVCSGSKGIILAIANSGAVAGLITLIGH-IESDTPNLVALSEEFFLVRYPDEVVLEKL 1162
ASLVC+GSKGIIL IANSGAVAGLITLIG+ +S +P R P
Sbjct: 1086 ASLVCNGSKGIILTIANSGAVAGLITLIGYXXKSLSP------------RNP-------- 1125
Query: 1163 FEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGL 1222
DVR GSTARKSIPLLVD+LRPIPDRP APP+AV+LLT+I +GSDTNKLIMAEAG L
Sbjct: 1126 ----DVRAGSTARKSIPLLVDLLRPIPDRPDAPPIAVQLLTRIANGSDTNKLIMAEAGAL 1181
Query: 1223 DALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSA 1282
DALTKYLSLSP+DSTEA+I+ELFRILFSN ++IRY+A LSSLNQLIAVLHLGSR ARLSA
Sbjct: 1182 DALTKYLSLSPKDSTEASISELFRILFSNSEIIRYDACLSSLNQLIAVLHLGSRDARLSA 1241
Query: 1283 ARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLT 1342
ARAL +LF A++I+DS+LA QA PPL+DML+A SE E E ALVAL+KLTS N KA L T
Sbjct: 1242 ARALRELFKADHIRDSELAWQAFPPLIDMLNAISESEQEAALVALIKLTSENALKAALFT 1301
Query: 1343 DIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDL 1402
+++G+ LE+LYKILSS SSL+LKR+AA+LCFI+F NAK ANPIA C+QPLISLMQS+
Sbjct: 1302 ELEGDPLETLYKILSSASSLDLKRDAAQLCFILFTNAKFRANPIALGCMQPLISLMQSNT 1361
Query: 1403 SIVVESAVCAFERLLDDEQQVELVEGYDV-VDLLVRLVSGTNHRLVEATVCALIKLGKDR 1461
S VVE+ VCAFERLLDDEQ E GYD+ VDLLV LV GTN+RL+E ++ ALIKLGKDR
Sbjct: 1362 SSVVEAGVCAFERLLDDEQLAEHAAGYDILVDLLVGLVCGTNYRLIEGSISALIKLGKDR 1421
Query: 1462 TPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMV 1521
RKL+MVKAG+ID CL LLPVAPS+LCS IAELFRILTNS AIARSSDAA IVEPLFMV
Sbjct: 1422 AQRKLEMVKAGVIDRCLLLLPVAPSSLCSAIAELFRILTNSGAIARSSDAANIVEPLFMV 1481
Query: 1522 LLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTEL 1581
LL+PDF LWGQHSALQALVNILEKPQSL+TLKLTPSQVIEPL++FLESPS AIQQLGTEL
Sbjct: 1482 LLRPDFGLWGQHSALQALVNILEKPQSLLTLKLTPSQVIEPLITFLESPSQAIQQLGTEL 1541
Query: 1582 LTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIF 1641
L+HLLAQEHFQQDITTKNAV+PLV+LAGIGILNLQQTA+KALEKISTSWPK VADAGGIF
Sbjct: 1542 LSHLLAQEHFQQDITTKNAVMPLVRLAGIGILNLQQTAIKALEKISTSWPKVVADAGGIF 1601
Query: 1642 EIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVAL 1701
E+AKVIIQDDPQPP LWE+AALVLSNVLRFNTEYYFKVP+VVLVKMLHS L+ST +AL
Sbjct: 1602 ELAKVIIQDDPQPPLELWETAALVLSNVLRFNTEYYFKVPLVVLVKMLHSALDSTTRLAL 1661
Query: 1702 NALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKY 1761
AL++HE TDASSAEQM +AG +DALLDLLRSHQCEE SGRLLEALFN+ R+R+MKVSKY
Sbjct: 1662 KALIVHEATDASSAEQMAEAGAVDALLDLLRSHQCEELSGRLLEALFNHVRVREMKVSKY 1721
Query: 1762 AIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDE 1821
AIAPLSQYLLDPQT SE+ +LLAALA+GDLSQ EGLARAS SVSACRAL+SLLEDQ ++E
Sbjct: 1722 AIAPLSQYLLDPQTGSETCRLLAALAIGDLSQQEGLARASDSVSACRALVSLLEDQPSEE 1781
Query: 1822 MKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTL 1881
M MVA+CALQNFVM SRTNRRAVAEAGGIL+VQELLLS +A+VAGQAA+L +FLFSNHTL
Sbjct: 1782 MTMVAVCALQNFVMHSRTNRRAVAEAGGILIVQELLLSPSADVAGQAAMLIRFLFSNHTL 1841
Query: 1882 QEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGA 1941
QEYVSNELIRSLTAALERELWSTATIN +VLRTL+VIF NFPKLH SEAATLCIP L+ A
Sbjct: 1842 QEYVSNELIRSLTAALERELWSTATINIQVLRTLNVIFTNFPKLHVSEAATLCIPCLINA 1901
Query: 1942 LKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERA 2001
LKSGSEAAQ SVLDTLCLL+ SWS M I++AKSQAM+AAEAIPILQ LMKTCPPSFHERA
Sbjct: 1902 LKSGSEAAQESVLDTLCLLKQSWSAMSIEIAKSQAMVAAEAIPILQTLMKTCPPSFHERA 1961
Query: 2002 DSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVI 2048
D LLHCLPGCLTVTIKRGNNLKQTMG TNAFCRLTIGNGPPRQTKV+
Sbjct: 1962 DLLLHCLPGCLTVTIKRGNNLKQTMGNTNAFCRLTIGNGPPRQTKVV 2008
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449449757|ref|XP_004142631.1| PREDICTED: uncharacterized protein LOC101220047 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3153 bits (8175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1569/2018 (77%), Positives = 1786/2018 (88%), Gaps = 3/2018 (0%)
Query: 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFI 90
MDDPE+TM+TVA+ +EQLHA+MSS QE+ELIT R+L IAK +K+AR LIGSH+QAMPLFI
Sbjct: 1 MDDPETTMATVAQLIEQLHASMSSSQEKELITARLLGIAKTQKDARTLIGSHSQAMPLFI 60
Query: 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
++LR+G+ +AKVNVA TLSVLCKD++LRLKVLLGGCIPPLLSLLKSES + KAAAEA+Y
Sbjct: 61 NVLRTGSAVAKVNVARTLSVLCKDDELRLKVLLGGCIPPLLSLLKSESIEASKAAAEAIY 120
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
EVSS GL +D VGMKIFVTEGV+PTLW+QLNP N+QD VV+GFVTG+LRNLCGDKDGYW+
Sbjct: 121 EVSSSGLLNDRVGMKIFVTEGVIPTLWNQLNPNNRQDKVVEGFVTGSLRNLCGDKDGYWK 180
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
ATLEAGGVDIIV LLSSD+A QSNAASLLARLMLAF DSI VI+SGAVKAL+ LV +
Sbjct: 181 ATLEAGGVDIIVDLLSSDSATVQSNAASLLARLMLAFSDSIAKVIESGAVKALLGLVSKK 240
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
NDISVRASAADALEALSSKS AKKA+V +G+PVLI A+VAPSKECMQG+ GQ+LQ HA
Sbjct: 241 NDISVRASAADALEALSSKSTGAKKAIVDEEGIPVLIRAVVAPSKECMQGKHGQSLQEHA 300
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
TRALAN+ GGM AL++YLGELSQSPR APVADI+GALAY LMVFE+ +D++PF+A +
Sbjct: 301 TRALANLCGGMSALILYLGELSQSPRHYAPVADIVGALAYTLMVFEK--SIDEDPFNATK 358
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
IEDILV LLKPHDNKLVQERVLEAMASLYGN++ S+ ++HAEAKKVLIGL+T A DV+E
Sbjct: 359 IEDILVTLLKPHDNKLVQERVLEAMASLYGNVYFSECLNHAEAKKVLIGLVTTAATDVQE 418
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
YLI SLT LC VGIWEAIGKREG+QLLISLLGLSSEQHQEYAVQL+ ILT+QVDDSKW
Sbjct: 419 YLIPSLTSLCCNGVGIWEAIGKREGVQLLISLLGLSSEQHQEYAVQLLEILTDQVDDSKW 478
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
AITAAGGIPPLVQLLE GS KARE AAH+LW LCCHSEDIRACVESAGA+PAFLWLLKSG
Sbjct: 479 AITAAGGIPPLVQLLETGSHKAREDAAHILWNLCCHSEDIRACVESAGAIPAFLWLLKSG 538
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
G +GQ+ASAMAL+KL++ ADSATINQLLA+LLGDSP KA++I+VLGHVLTMA ED V
Sbjct: 539 GSRGQEASAMALSKLVQTADSATINQLLAMLLGDSPKEKANIIQVLGHVLTMASYEDFVH 598
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
+ SAANKGLR+LVQVLNSSNEE Q +AASVLADLFS R DI SLATDEIV+PCM+LL S
Sbjct: 599 RDSAANKGLRTLVQVLNSSNEETQAHAASVLADLFSSRPDISDSLATDEIVHPCMKLLAS 658
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
NTQ VATQSARAL ALSRP+KTK NKM +IAEGDVKPLIKLAKTSS+DAAETAVAALAN
Sbjct: 659 NTQ-VATQSARALAALSRPSKTKAMNKMRHIAEGDVKPLIKLAKTSSVDAAETAVAALAN 717
Query: 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF 810
LLSD IAAE L EDVVSALTRVL EGT GKK+A++ALHQLL HF G+V AQCRF
Sbjct: 718 LLSDSQIAAEALAEDVVSALTRVLGEGTPVGKKSAAQALHQLLNHFQPGEVFASEAQCRF 777
Query: 811 VVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCL 870
+VL LVDSL +MD++G +V DALEV++LL TK G + TY PW+ALAE PSS+EPLV CL
Sbjct: 778 IVLALVDSLRSMDLDGNNVVDALEVISLLFITKVGASLTYAPWSALAEDPSSLEPLVYCL 837
Query: 871 AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
AEGP PLQD+ IEILSRLCGDQP VLGD L+ARS S+ +LA +I+ SS+ EV+ GGAALL
Sbjct: 838 AEGPSPLQDRVIEILSRLCGDQPVVLGDLLVARSKSLDSLASKIIKSSNPEVKSGGAALL 897
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
ICA KEHK+QS+ ALD G LK LI+ALV ++KQNS+ SS DIEVRT RG+++R+ F +
Sbjct: 898 ICAMKEHKQQSVGALDSFGCLKLLIHALVGLIKQNSTYSSPDIEVRTHRGFIKRSTFLDG 957
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
D FD D AT++GGT+ALWLL II+SF N V V++AG LEALSDKL SYT+N QA+ E
Sbjct: 958 DRFDASDSATVMGGTIALWLLSIIASFNVENKVAVLQAGGLEALSDKLVSYTTNSQAKLE 1017
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
D +GIWISAL LAILFQDA++ SPATM IIP+LA L RS+EV D+FFAAQA+ASLVC+G
Sbjct: 1018 DVDGIWISALLLAILFQDASVASSPATMSIIPSLAFLARSEEVNDKFFAAQAIASLVCNG 1077
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRV 1170
SKG+ LAIANSGA+ GLITLIG +ESD PNLV+L++EF L + PD+VVLE LFEIE++R+
Sbjct: 1078 SKGVNLAIANSGAIVGLITLIGFLESDMPNLVSLADEFSLTQKPDQVVLEHLFEIEEIRI 1137
Query: 1171 GSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
GSTARK+IPLLVD+LRP+PDRPGAPPVAV+LLT+I DG+D NKL+MAEAG +DALTKYLS
Sbjct: 1138 GSTARKTIPLLVDLLRPLPDRPGAPPVAVKLLTRIADGNDANKLMMAEAGAVDALTKYLS 1197
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF 1290
LSPQDSTEA I++L RILFSNPDLIRYEAS SSLNQLIAVL LGSR AR SAARAL +LF
Sbjct: 1198 LSPQDSTEAIISDLLRILFSNPDLIRYEASASSLNQLIAVLRLGSRSARFSAARALFELF 1257
Query: 1291 DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLE 1350
D E I+DS+LA QA PLVDML+A SE E AL AL++LTSG +SK LL D++G L+
Sbjct: 1258 DCEYIRDSELAKQAFYPLVDMLNATSESEQGAALSALIRLTSGYSSKTDLLNDVEGTPLD 1317
Query: 1351 SLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410
SL KIL ++SSLELK NAAELCF++FGN K+ NPI SECIQPLI LMQSD S VES V
Sbjct: 1318 SLCKILITSSSLELKTNAAELCFVLFGNIKVRTNPIVSECIQPLIFLMQSDSSAAVESGV 1377
Query: 1411 CAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVK 1470
CA ERLLDDEQQVEL YD+V+LLV LVSGTN+RL+EA++C+LIKLGKDRT K+ MVK
Sbjct: 1378 CALERLLDDEQQVELTLPYDIVNLLVSLVSGTNYRLIEASICSLIKLGKDRTQLKMDMVK 1437
Query: 1471 AGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
G+IDNCL+LLP APS+LCS++AELFRILTNS+AIARSSDAAKIVEPLF+VLL+PDF+LW
Sbjct: 1438 VGVIDNCLELLPDAPSSLCSSVAELFRILTNSNAIARSSDAAKIVEPLFLVLLRPDFNLW 1497
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEH 1590
GQHSALQALVNILEKPQSL+TL LTPSQVIEPL+SFLESPS A+QQLGTELL+HLLAQEH
Sbjct: 1498 GQHSALQALVNILEKPQSLLTLNLTPSQVIEPLISFLESPSRAVQQLGTELLSHLLAQEH 1557
Query: 1591 FQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQD 1650
FQQDITTKNAVVPLVQLAGIGILNLQQTA++ALEKISTSWPK+VADAGGIFE++KVIIQ+
Sbjct: 1558 FQQDITTKNAVVPLVQLAGIGILNLQQTAIRALEKISTSWPKSVADAGGIFELSKVIIQE 1617
Query: 1651 DPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERT 1710
DPQPPH+LWESAA++LSNVLRFN +YYFKVPVVVLVKMLHST+ESTITVAL+AL+ HE
Sbjct: 1618 DPQPPHTLWESAAMILSNVLRFNAKYYFKVPVVVLVKMLHSTVESTITVALSALVNHEGN 1677
Query: 1711 DASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYL 1770
D SSAEQM +AG IDAL+DLLRSHQCEE SGRLLE LFNN R+R+MKVSKYAIAPLSQYL
Sbjct: 1678 DTSSAEQMAEAGAIDALVDLLRSHQCEEASGRLLETLFNNVRVREMKVSKYAIAPLSQYL 1737
Query: 1771 LDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICAL 1830
LDPQTRS+ GKLLA LALGDLSQH G ARAS SVSACRALISLLED++T+EMKMVAICAL
Sbjct: 1738 LDPQTRSQPGKLLATLALGDLSQHAGHARASDSVSACRALISLLEDEATEEMKMVAICAL 1797
Query: 1831 QNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELI 1890
QNFVM SRTNRRAVAEAGGILVVQELLLS + E++GQAALL KFLFSNHTLQEYVSNELI
Sbjct: 1798 QNFVMHSRTNRRAVAEAGGILVVQELLLSPSPEISGQAALLIKFLFSNHTLQEYVSNELI 1857
Query: 1891 RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQ 1950
RSLTAALERELWSTATINEEVLRTL+VIF NFPKLH SEAATL IPHL+GALKSG+EAAQ
Sbjct: 1858 RSLTAALERELWSTATINEEVLRTLNVIFTNFPKLHVSEAATLSIPHLIGALKSGNEAAQ 1917
Query: 1951 GSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPG 2010
+VLDTLCLL++SWS+MPID+AKSQAMIAAEAIPILQMLMKTCPPSFH+RADSLLHCLPG
Sbjct: 1918 ETVLDTLCLLKHSWSSMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHDRADSLLHCLPG 1977
Query: 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVI 2048
CLTV IKRGNNLKQTMG+TNAFCRL+IGNGPPRQTKV+
Sbjct: 1978 CLTVIIKRGNNLKQTMGSTNAFCRLSIGNGPPRQTKVV 2015
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449500671|ref|XP_004161164.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223712 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3143 bits (8150), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1567/2018 (77%), Positives = 1783/2018 (88%), Gaps = 3/2018 (0%)
Query: 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFI 90
MDDPE+TM+TVA+ +EQLHA+MSS QE+ELIT R+L IAK +K+AR LIGSH+QAMPLFI
Sbjct: 1 MDDPETTMATVAQLIEQLHASMSSSQEKELITARLLGIAKTQKDARTLIGSHSQAMPLFI 60
Query: 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
++LR+G+ +AKVNVA TLSVLCKD++LRLKVLLGGCIPPLLSLLKSES + KAAAEA+Y
Sbjct: 61 NVLRTGSAVAKVNVARTLSVLCKDDELRLKVLLGGCIPPLLSLLKSESIEASKAAAEAIY 120
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
EVSS GL +D VGMKIFVTEGV+PTLW+QLNP N+QD VV+GFVTG+LRNLCGDKDGYW+
Sbjct: 121 EVSSSGLLNDRVGMKIFVTEGVIPTLWNQLNPNNRQDKVVEGFVTGSLRNLCGDKDGYWK 180
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
ATLEAGGVDIIV LLSSD+A QSNAASLLARLMLAF DSI VI+SGAVKAL+ LV +
Sbjct: 181 ATLEAGGVDIIVDLLSSDSATVQSNAASLLARLMLAFSDSIAKVIESGAVKALLGLVSKK 240
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
NDISVRASAADALEALSSKS AKKA+V +G+PVLI A+VAPSKECMQG+ GQ+LQ HA
Sbjct: 241 NDISVRASAADALEALSSKSTGAKKAIVDEEGIPVLIRAVVAPSKECMQGKHGQSLQEHA 300
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
TRALAN+ GGM AL++YLGELSQSPR APVADI+GALAY LMVFE+ +D++PF+A +
Sbjct: 301 TRALANLCGGMSALILYLGELSQSPRHYAPVADIVGALAYTLMVFEK--SIDEDPFNATK 358
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
IEDILV LLKPHDNKLVQERVLEAMASLYGN++ S+ ++HAEAKKVLIGL+T A DV+E
Sbjct: 359 IEDILVTLLKPHDNKLVQERVLEAMASLYGNVYFSECLNHAEAKKVLIGLVTTAATDVQE 418
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
YLI SLT LC VGIWEAIGKREG+QLLISLLGLSSEQHQEYAVQL+ ILT+QVDDSKW
Sbjct: 419 YLIPSLTSLCCNGVGIWEAIGKREGVQLLISLLGLSSEQHQEYAVQLLEILTDQVDDSKW 478
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
AITAAGGIPPLVQLLE GS KARE AAH+LW LCCHSEDIRACVESAGA+PAFLWLLKSG
Sbjct: 479 AITAAGGIPPLVQLLETGSHKAREDAAHILWNLCCHSEDIRACVESAGAIPAFLWLLKSG 538
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
G +GQ+ASAMAL+KL++ ADSATINQLLA+LLGDSP KA++I+VLGHVLTMA ED V
Sbjct: 539 GSRGQEASAMALSKLVQTADSATINQLLAMLLGDSPKEKANIIQVLGHVLTMASYEDFVH 598
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
+ SAANKGLR+LVQVLNSSNEE Q +AASVLADLFS R DI SLATDEIV+PCM+LL S
Sbjct: 599 RDSAANKGLRTLVQVLNSSNEETQAHAASVLADLFSSRPDISDSLATDEIVHPCMKLLAS 658
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
NTQ VATQSARAL ALSRP+KTK NKM +IAEGDVKPLIKLAKTSS+DAAETAVAALAN
Sbjct: 659 NTQ-VATQSARALAALSRPSKTKAMNKMCHIAEGDVKPLIKLAKTSSVDAAETAVAALAN 717
Query: 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRF 810
LLSD IAAE L EDVVSALTRVL EGT GKK+A++ALHQLL HF G+V AQCRF
Sbjct: 718 LLSDSQIAAEALAEDVVSALTRVLGEGTPVGKKSAAQALHQLLNHFQPGEVFASEAQCRF 777
Query: 811 VVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCL 870
+VL LVDSL +MD++G +V DALEV++LL TK G + TY PW+ALAE PSS+EPLV CL
Sbjct: 778 IVLALVDSLRSMDLDGNNVVDALEVISLLFITKVGASLTYAPWSALAEDPSSLEPLVYCL 837
Query: 871 AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
AEGP PLQD+ IEILSRLCGDQP VLGD L+ARS S+ +LA +I+ SS+ EV+ GGAALL
Sbjct: 838 AEGPSPLQDRVIEILSRLCGDQPVVLGDLLVARSKSLDSLASKIIKSSNPEVKSGGAALL 897
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
ICA KEHK+QS+ ALD G LK LI+ALV + K NS+ SS DIEVRT RG+++R+ F +
Sbjct: 898 ICAMKEHKQQSVGALDSFGCLKLLIHALVGLXKTNSTYSSPDIEVRTHRGFIKRSTFLDG 957
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
D FD D AT++GGT+ALWLL II+SF N V V++AG LEALSDKL SYT+N QA+ E
Sbjct: 958 DRFDASDSATVMGGTIALWLLSIIASFNVENKVAVLQAGGLEALSDKLVSYTTNSQAKLE 1017
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
D +GIWISAL LAILFQDA++ SPATM IIP+LA L RS+EV D+FFAAQA+ASLVC+G
Sbjct: 1018 DVDGIWISALLLAILFQDASVASSPATMSIIPSLAFLARSEEVNDKFFAAQAIASLVCNG 1077
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRV 1170
SKG+ LAIANSGA+ GLITLIG +ESD PNLV+L++EF L + PD+VVLE LFEIE++R+
Sbjct: 1078 SKGVNLAIANSGAIVGLITLIGFLESDMPNLVSLADEFSLTQKPDQVVLEHLFEIEEIRI 1137
Query: 1171 GSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
GSTARK+IPLLVD+LRP+PDRPGAPPVAV+LLT+I DG+D NKL+MAEAG +DALTKYLS
Sbjct: 1138 GSTARKTIPLLVDLLRPLPDRPGAPPVAVKLLTRIADGNDANKLMMAEAGAVDALTKYLS 1197
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF 1290
LSPQDSTEA I++L RILFSNPDLIRYEAS SSLNQLIAVL LGSR AR SAARAL +LF
Sbjct: 1198 LSPQDSTEAIISDLLRILFSNPDLIRYEASASSLNQLIAVLRLGSRSARFSAARALFELF 1257
Query: 1291 DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLE 1350
D E I+DS+LA QA PLVDML+A SE E AL AL++LTSG +SK LL D++G L+
Sbjct: 1258 DCEYIRDSELAKQAFYPLVDMLNATSESEQGAALSALIRLTSGYSSKTDLLNDVEGTPLD 1317
Query: 1351 SLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410
SL KIL ++SSLELK NAAELCF++FGN K+ NPI SECIQPLI LMQSD S VES V
Sbjct: 1318 SLCKILITSSSLELKTNAAELCFVLFGNIKVRTNPIVSECIQPLIFLMQSDSSAAVESGV 1377
Query: 1411 CAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVK 1470
CA ERLLDDEQQVEL YD+V+LLV LVSGTN+RL+EA++C+LIKLGKDRT K+ MVK
Sbjct: 1378 CALERLLDDEQQVELTLPYDIVNLLVSLVSGTNYRLIEASICSLIKLGKDRTQLKMDMVK 1437
Query: 1471 AGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
G+IDNCL+LLP APS+LCS++AELFRILTNS+AIARSSDAAKIVEPL +VLL+PDF+LW
Sbjct: 1438 VGVIDNCLELLPDAPSSLCSSVAELFRILTNSNAIARSSDAAKIVEPLXLVLLRPDFNLW 1497
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEH 1590
GQHSALQALVNILEKPQSL+TL LTPSQVIEPL+SFLESPS A+QQLGTELL+HLLAQEH
Sbjct: 1498 GQHSALQALVNILEKPQSLLTLNLTPSQVIEPLISFLESPSRAVQQLGTELLSHLLAQEH 1557
Query: 1591 FQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQD 1650
FQQDITTKNAVVPLVQLAGIGILNLQQTA++ALEKISTSWPK+VADAGGIFE++KVIIQ+
Sbjct: 1558 FQQDITTKNAVVPLVQLAGIGILNLQQTAIRALEKISTSWPKSVADAGGIFELSKVIIQE 1617
Query: 1651 DPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERT 1710
DPQPPH+LWESAA++LSNVLRFN +YYFKVPVVVLVKMLHST+ESTITVAL+AL+ HE
Sbjct: 1618 DPQPPHTLWESAAMILSNVLRFNAKYYFKVPVVVLVKMLHSTVESTITVALSALVNHEGN 1677
Query: 1711 DASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYL 1770
D SSAEQM +AG IDAL+DLLRSHQCEE SGRLLE LFNN R+R+MKVSKYAIAPLSQYL
Sbjct: 1678 DTSSAEQMAEAGAIDALVDLLRSHQCEEASGRLLETLFNNVRVREMKVSKYAIAPLSQYL 1737
Query: 1771 LDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICAL 1830
LDPQTRS+ GKLLA LALGDLSQH G ARAS SVSACRALISLLED++T+EMKMVAICAL
Sbjct: 1738 LDPQTRSQPGKLLATLALGDLSQHAGHARASDSVSACRALISLLEDEATEEMKMVAICAL 1797
Query: 1831 QNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELI 1890
QNFVM SRTNRRAVAEAGGILVVQELLLS + E++GQAALL KFLFSNHTLQEYVSNELI
Sbjct: 1798 QNFVMHSRTNRRAVAEAGGILVVQELLLSPSPEISGQAALLIKFLFSNHTLQEYVSNELI 1857
Query: 1891 RSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQ 1950
RSLTAALERELWSTATINEEVLRTL+VIF NFPKLH SEAATL IPHL+GALKSG+EAAQ
Sbjct: 1858 RSLTAALERELWSTATINEEVLRTLNVIFTNFPKLHVSEAATLSIPHLIGALKSGNEAAQ 1917
Query: 1951 GSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPG 2010
+VLDTLCLL++SWS+MPID+AKSQAMIAAEAIPILQMLMKTCPPSFH+RADSLLHCLPG
Sbjct: 1918 ETVLDTLCLLKHSWSSMPIDIAKSQAMIAAEAIPILQMLMKTCPPSFHDRADSLLHCLPG 1977
Query: 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVI 2048
CLTV IKRGNNLKQTMG+TNAFCRL+IGNGPPRQTKV+
Sbjct: 1978 CLTVIIKRGNNLKQTMGSTNAFCRLSIGNGPPRQTKVV 2015
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302141793|emb|CBI18996.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3061 bits (7936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1545/1872 (82%), Positives = 1687/1872 (90%), Gaps = 51/1872 (2%)
Query: 178 DQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAA 237
+ L KNKQD VV+GFVTGALRNLCGDK+GYW+ATLEAGGVDIIVGLL SDNAAAQSNAA
Sbjct: 115 EDLRLKNKQDKVVEGFVTGALRNLCGDKNGYWKATLEAGGVDIIVGLLYSDNAAAQSNAA 174
Query: 238 SLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAV 297
SLLARLMLAF DSIP VIDSGAVKAL++L+GQ NDISVRASAADALEALSSKS +AKKAV
Sbjct: 175 SLLARLMLAFSDSIPKVIDSGAVKALLRLLGQENDISVRASAADALEALSSKSTRAKKAV 234
Query: 298 VAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL 357
V ADGVPVLIGAIVAPSKECMQG+ GQALQGHATRALANI GGM AL++YLGELSQSPRL
Sbjct: 235 VDADGVPVLIGAIVAPSKECMQGECGQALQGHATRALANICGGMSALIMYLGELSQSPRL 294
Query: 358 AAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMAS 417
AAPVADIIGALAY+LMVFEQ+SGV++EPFD QIEDILVMLLKP DNKLVQERVLEA+AS
Sbjct: 295 AAPVADIIGALAYSLMVFEQQSGVEEEPFDVTQIEDILVMLLKPRDNKLVQERVLEALAS 354
Query: 418 LYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQ 477
LY N +LS+W++HAEAKKVLI LITMA AD +EYLIL+LT LC VG+WEAIG REGIQ
Sbjct: 355 LYSNKYLSRWINHAEAKKVLIALITMAAADAQEYLILALTSLCCDGVGLWEAIGMREGIQ 414
Query: 478 LLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAA 537
LLISLLGLSSEQHQEYAVQL+AILT+QVDDSKWAITAAGGIPPLVQLLE GSQKARE AA
Sbjct: 415 LLISLLGLSSEQHQEYAVQLLAILTDQVDDSKWAITAAGGIPPLVQLLEIGSQKAREDAA 474
Query: 538 HVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQL 597
HVLW LCCHSEDIRACVESAGAVPAFLWLLKSGG KGQ+ASAMAL KL+R ADSATINQL
Sbjct: 475 HVLWNLCCHSEDIRACVESAGAVPAFLWLLKSGGLKGQEASAMALGKLVRTADSATINQL 534
Query: 598 LALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYA 657
LALLLGDSPSSKAH+I+VLGHVLTMA EDLV KGSAANKGL SLVQVLNSSNEE QEYA
Sbjct: 535 LALLLGDSPSSKAHIIRVLGHVLTMASHEDLVHKGSAANKGLTSLVQVLNSSNEETQEYA 594
Query: 658 ASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717
ASVLADLFS RQDIC SLATDEIV+PCM+LLTS TQ++ATQSARALGALSRPTK K TNK
Sbjct: 595 ASVLADLFSTRQDICDSLATDEIVHPCMKLLTSKTQVIATQSARALGALSRPTKAKATNK 654
Query: 718 MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG 777
MSYIAEGDVKPLIKLAKTSSIDAAETA
Sbjct: 655 MSYIAEGDVKPLIKLAKTSSIDAAETA--------------------------------- 681
Query: 778 TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVA 837
HFPVGDVL GNAQCRF VL LVDSLN+MD++GTD ADALEVVA
Sbjct: 682 -----------------HFPVGDVLTGNAQCRFAVLALVDSLNSMDLDGTDAADALEVVA 724
Query: 838 LLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLG 897
LLAR KQ +NFTY PW+ALAEVPSS+E LV CLAEGPP +QDKAIEILSRLCGDQP VLG
Sbjct: 725 LLARMKQSVNFTYSPWSALAEVPSSLESLVRCLAEGPPLVQDKAIEILSRLCGDQPVVLG 784
Query: 898 DFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYA 957
D L+A+S SIG+LA+RIM+SSSLEVRVGG ALLICAAKEHK+ +MDALD+SGYL+PLIYA
Sbjct: 785 DLLVAQSRSIGSLANRIMNSSSLEVRVGGTALLICAAKEHKQAAMDALDVSGYLRPLIYA 844
Query: 958 LVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSF 1017
LVDMMKQNSSCSSL+IEVRTPRG+MERTAFQE +F+VPDPAT+LGGTVALWL+ II SF
Sbjct: 845 LVDMMKQNSSCSSLEIEVRTPRGFMERTAFQEGIEFEVPDPATVLGGTVALWLISIICSF 904
Query: 1018 LRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPAT 1077
+ +TVMEAG LEALS+KL SY SNPQAEFEDTEGIWISAL LAILFQDAN+VL+PAT
Sbjct: 905 HAKSKITVMEAGGLEALSEKLTSYASNPQAEFEDTEGIWISALLLAILFQDANVVLAPAT 964
Query: 1078 MRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESD 1137
MRIIP+LALL++SDEVIDRFFAAQAMASLVC+GS+GI L IANSGAVAGLITLIG+IE D
Sbjct: 965 MRIIPSLALLMKSDEVIDRFFAAQAMASLVCNGSRGINLTIANSGAVAGLITLIGYIELD 1024
Query: 1138 TPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPV 1197
PNLVALSEEF LVR PD+VVLE LFEIED+RVGSTARKSIPLLVD+LRPIPDRPGAPP+
Sbjct: 1025 MPNLVALSEEFCLVRKPDQVVLENLFEIEDIRVGSTARKSIPLLVDLLRPIPDRPGAPPI 1084
Query: 1198 AVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRY 1257
AV+LLT+I DGSDTNKLIMAEAG LDALTKYLSLSPQDS+EA+++EL RILFSNPDL+RY
Sbjct: 1085 AVQLLTRIADGSDTNKLIMAEAGALDALTKYLSLSPQDSSEASVSELLRILFSNPDLLRY 1144
Query: 1258 EASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASE 1317
EAS+SSLNQLIAVL LGSR AR SAARALH+LFDAENI+DS+LA QAV PLVDML+AASE
Sbjct: 1145 EASISSLNQLIAVLRLGSRNARFSAARALHELFDAENIRDSELARQAVQPLVDMLNAASE 1204
Query: 1318 CELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLEL-KRNAAELCFIMF 1376
E + ALVAL+KLT GN+SKA L+TD++GN LESLYKILSS++S K NAA+LCF++F
Sbjct: 1205 SEQQAALVALIKLTMGNSSKASLMTDVEGNPLESLYKILSSSTSSLELKGNAAQLCFVLF 1264
Query: 1377 GNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLV 1436
KI A P+ASECI+PLI LMQS+ S VES+VCAFERLLDDEQ VEL YD+VDL+V
Sbjct: 1265 NIPKIRALPMASECIEPLILLMQSESSTAVESSVCAFERLLDDEQLVELAAAYDIVDLIV 1324
Query: 1437 RLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELF 1496
LVSG+NH+L+E ++CAL KLGKDRTP KL MVKAGIIDNCL+LLPVAPS+LCS+IAELF
Sbjct: 1325 SLVSGSNHQLIETSICALTKLGKDRTPLKLDMVKAGIIDNCLELLPVAPSSLCSSIAELF 1384
Query: 1497 RILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTP 1556
RILTNSSAI++ S AA+IVEPLFMVLL+PDFS+WGQHSALQALVNILEKPQSL TLKLTP
Sbjct: 1385 RILTNSSAISKGSAAARIVEPLFMVLLRPDFSMWGQHSALQALVNILEKPQSLATLKLTP 1444
Query: 1557 SQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQ 1616
SQVIEPL+SFLESPS AIQQLGTELL+HLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQ
Sbjct: 1445 SQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQ 1504
Query: 1617 QTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEY 1676
QTA+KALE IS SWPKAVADAGGIFE+AKVIIQDDPQPPH+LWESAALVLSNVLRFN EY
Sbjct: 1505 QTAIKALENISISWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLRFNAEY 1564
Query: 1677 YFKVPVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQC 1736
YFKVP+VVLVKMLHSTLESTITVALNAL++HER+D+S+AEQMT+AG IDALLDLLRSHQC
Sbjct: 1565 YFKVPLVVLVKMLHSTLESTITVALNALIVHERSDSSNAEQMTEAGAIDALLDLLRSHQC 1624
Query: 1737 EETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEG 1796
EE +GRLLEALFNN R+R+MKVSKYAIAPLSQYLLDPQTRS+SG+LLAALALGDLSQHEG
Sbjct: 1625 EEPAGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGRLLAALALGDLSQHEG 1684
Query: 1797 LARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQEL 1856
LARAS SVSACRALISLLEDQ T+EMKMVAICALQNFVM SRTNRRAVAEAGGILVVQEL
Sbjct: 1685 LARASDSVSACRALISLLEDQPTEEMKMVAICALQNFVMRSRTNRRAVAEAGGILVVQEL 1744
Query: 1857 LLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLH 1916
LLS N++VA QAALL KFLFSNHTLQEYVSNELIRSLTAALE+ELWSTATINEEVLRT++
Sbjct: 1745 LLSPNSDVAAQAALLIKFLFSNHTLQEYVSNELIRSLTAALEKELWSTATINEEVLRTIN 1804
Query: 1917 VIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQA 1976
VIF NF KLH SEAATLCIPHLVGALKSGS+AAQ SVLDTLCLL++SWSTMPID+AKSQA
Sbjct: 1805 VIFANFHKLHISEAATLCIPHLVGALKSGSDAAQESVLDTLCLLKHSWSTMPIDIAKSQA 1864
Query: 1977 MIAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLT 2036
MIAAEAIPILQMLMKTCPPSFH++ADSLLHCLPGCLTVTIKRGNNLKQ MG TNAFCRLT
Sbjct: 1865 MIAAEAIPILQMLMKTCPPSFHDKADSLLHCLPGCLTVTIKRGNNLKQAMGGTNAFCRLT 1924
Query: 2037 IGNGPPRQTKVI 2048
IGNGPPRQTKV+
Sbjct: 1925 IGNGPPRQTKVV 1936
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839607|ref|XP_002887685.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297333526|gb|EFH63944.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2838 bits (7356), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1413/2033 (69%), Positives = 1680/2033 (82%), Gaps = 2/2033 (0%)
Query: 17 SSTSQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEAR 76
SS+ Q + + MDDPE M+TVA+ +EQLHA SSPQ++EL T R+L IAK K+EAR
Sbjct: 14 SSSLQSGKVHAKMEMDDPEKAMATVAQLIEQLHAKTSSPQDKELTTARLLGIAKGKREAR 73
Query: 77 LLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS 136
LIGS+ QAMPLFIS+LR+GT +AKVNVA+ L VLCKD DLRLKVLLGGCIPPLLS+LKS
Sbjct: 74 RLIGSYGQAMPLFISMLRNGTSMAKVNVASILCVLCKDNDLRLKVLLGGCIPPLLSVLKS 133
Query: 137 ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG 196
+ +TRKAAAEA+ EVSS G+S+DH+GMKIF+TEGVVPTLWDQL+ K Q+ VV+G+VTG
Sbjct: 134 GTIETRKAAAEAICEVSSAGISNDHIGMKIFITEGVVPTLWDQLSLKGNQEKVVEGYVTG 193
Query: 197 ALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVID 256
ALRNLCG D YWR TLE GVDI+V LLSSDN +Q+NAASLLARL+L+F DSI +++
Sbjct: 194 ALRNLCGVDDSYWRLTLEGSGVDIVVSLLSSDNPHSQANAASLLARLVLSFCDSIQKILN 253
Query: 257 SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKE 316
SG VK+L+QL+ Q NDI+VRASAADALEALSSKS +AKK V A GV LI AIVAPSKE
Sbjct: 254 SGVVKSLIQLLEQKNDINVRASAADALEALSSKSDEAKKCVKEAGGVHALIEAIVAPSKE 313
Query: 317 CMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFE 376
CMQG+ GQ+LQ HAT ALAN++GGM L++YLGE+SQSPRL P+ D+IGALAYALM+F+
Sbjct: 314 CMQGKHGQSLQEHATGALANVFGGMRHLIIYLGEVSQSPRLTEPIGDVIGALAYALMIFK 373
Query: 377 QKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKV 436
Q ++ F E ILV LLKP D KL+QER+LEAMASLYGN LS ++ AEAK+V
Sbjct: 374 QPES-SEKIFYPSVTESILVKLLKPRDTKLIQERILEAMASLYGNSSLSCYLDDAEAKRV 432
Query: 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQ 496
LI LITMA+ADVRE LI+ L+ LC +VGIWEAIGKREGIQL IS LGLSSEQHQEYAV+
Sbjct: 433 LIALITMASADVRERLIICLSGLCHDKVGIWEAIGKREGIQLFISFLGLSSEQHQEYAVE 492
Query: 497 LIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVES 556
++ ILT QVDDSKWA+TAAGGIPPLVQLLE GSQKA+E AA +LW LCCHSE+IR CVE
Sbjct: 493 MLKILTAQVDDSKWAVTAAGGIPPLVQLLETGSQKAKEDAACILWNLCCHSEEIRDCVER 552
Query: 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVL 616
AG +PAFLWLLK+GGP QD SA L KL+ AD AT+NQLLALLLGD P+SK HVIKVL
Sbjct: 553 AGGIPAFLWLLKTGGPNSQDTSAKTLVKLVHTADPATVNQLLALLLGDDPTSKIHVIKVL 612
Query: 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLA 676
GHVL+ A QEDLV +G AANKGLRSLV+ L SS EE +E+ ASVLADLFS RQDICG LA
Sbjct: 613 GHVLSKASQEDLVHRGCAANKGLRSLVESLTSSREETKEHTASVLADLFSSRQDICGHLA 672
Query: 677 TDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS 736
TD+I+NP ++LLT+NTQ VA Q ARAL ALSRP K K SYIAEGD+K LIKLAK S
Sbjct: 673 TDDIINPWIKLLTNNTQNVAKQVARALDALSRPVKKNNNKKKSYIAEGDIKSLIKLAKNS 732
Query: 737 SIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796
SI++AE AV+ALANLLSDPDIAAE L EDVVSA TR+LA+G+ EGK+NASRALHQLLK+F
Sbjct: 733 SIESAENAVSALANLLSDPDIAAEALAEDVVSAFTRILADGSPEGKRNASRALHQLLKNF 792
Query: 797 PVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAAL 856
PV DVLKG+AQCRF +L+LVDSL ++D++ D + LEVVALLA+TK G+NF+YPPW AL
Sbjct: 793 PVCDVLKGSAQCRFAILSLVDSLKSIDVDSPDAFNILEVVALLAKTKSGVNFSYPPWTAL 852
Query: 857 AEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMH 916
AEVPSS+E LV CL EG +QDKAIE+LSRLC DQ +L + +++R S+G LADRI++
Sbjct: 853 AEVPSSLETLVQCLTEGHTLVQDKAIEVLSRLCSDQQFLLSELIVSRPKSMGVLADRIVN 912
Query: 917 SSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVR 976
+SSLEVRVGG ALL+CAAKE K+ + LD SG+ K L++ALVDM+K NS+C SL+ EV+
Sbjct: 913 ASSLEVRVGGTALLLCAAKEKKQLITETLDQSGFSKLLLHALVDMIKHNSTCFSLETEVQ 972
Query: 977 TPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSD 1036
TP+G++E+ FQ+ F PDPA ILGGTVALWLL I++S + V VMEAG LE L
Sbjct: 973 TPKGFLEKKVFQDTGSFYFPDPAKILGGTVALWLLCILTSVDAKSKVIVMEAGGLEVLLG 1032
Query: 1037 KLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDR 1096
KLA YTS+PQAEFED+EGIWISAL LAI+FQD N+ S TMRIIP LA+LL SDE++DR
Sbjct: 1033 KLARYTSSPQAEFEDSEGIWISALLLAIMFQDDNVSFSSTTMRIIPTLAVLLGSDELVDR 1092
Query: 1097 FFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDE 1156
+FAA AMASLVC+ ++GI L IANSGAV+G+I L+G++ESD NLVAL+ EF LV+ PD+
Sbjct: 1093 YFAAHAMASLVCTRNRGIDLTIANSGAVSGIINLLGYVESDILNLVALANEFSLVKEPDQ 1152
Query: 1157 VVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIM 1216
V+L+ LFEIEDVR+GSTARKSIPLLVD+LRPIPDRPGAP AV++L +I DGSDTNKL+M
Sbjct: 1153 VILQHLFEIEDVRLGSTARKSIPLLVDLLRPIPDRPGAPQFAVQILIRIADGSDTNKLLM 1212
Query: 1217 AEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSR 1276
AEAG ++ALTKYLSLSPQDSTE I+EL R+LFSN +L + E +LSSLNQLIAVL LGSR
Sbjct: 1213 AEAGAVEALTKYLSLSPQDSTEYAISELLRVLFSNHELRQNEMALSSLNQLIAVLRLGSR 1272
Query: 1277 GARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTS 1336
AR SAA AL++LF+AENI++S++A QAV PL+D+ SE E EVAL AL+KL+SGNTS
Sbjct: 1273 SARYSAAGALNELFEAENIRNSEIACQAVQPLMDIFGTVSESEQEVALSALIKLSSGNTS 1332
Query: 1337 KACLLTDIDGNLLESLYKILSSNS-SLELKRNAAELCFIMFGNAKIIANPIASECIQPLI 1395
LL D++G+LLE++ KILSS S S ELK NAA LC ++F N I +P AS C++PLI
Sbjct: 1333 NTALLIDVEGSLLENVIKILSSASASEELKINAARLCSVVFLNKNIRTSPSASGCMKPLI 1392
Query: 1396 SLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALI 1455
+LMQS+ S VE+A+CA + LLDDEQ +EL +++ +LLV LVSG N+ ++EA++ ALI
Sbjct: 1393 TLMQSERSAAVEAAICAIKILLDDEQHLELAAAHNIQELLVGLVSGRNYVIIEASLSALI 1452
Query: 1456 KLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIV 1515
KLGKDR PRKL MV+AGII+ CL+LLP A S+LCS +AEL RILTNS IAR D AK V
Sbjct: 1453 KLGKDRVPRKLDMVEAGIIERCLELLPGASSSLCSAVAELLRILTNSGVIARRPDVAKTV 1512
Query: 1516 EPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQ 1575
EPLF VLL+ D +LWGQHSALQALVNILEK QSL TPS+ I PL+SFLES S AIQ
Sbjct: 1513 EPLFAVLLRSDLTLWGQHSALQALVNILEKQQSLEAFSFTPSEAIVPLISFLESSSQAIQ 1572
Query: 1576 QLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVA 1635
QLG ELL+H L E FQQDITT++AVVPLV+LAGIGIL+LQ+TA+KALEKIS SWPKAV
Sbjct: 1573 QLGAELLSHFLTMEDFQQDITTQSAVVPLVRLAGIGILSLQETAIKALEKISASWPKAVL 1632
Query: 1636 DAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLES 1695
DAGGIFE++KVI+Q+DPQPP LWESAA VLSN+L+++ E +F+V + VLVK+L ST+E
Sbjct: 1633 DAGGIFELSKVILQEDPQPPLDLWESAAFVLSNILQYDAECFFRVELPVLVKLLFSTIEG 1692
Query: 1696 TITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQ 1755
T+ +AL AL++HE+ DASS QM + G IDALLDLLRSHQCEE SG LLE +FNN R+R+
Sbjct: 1693 TVLLALKALMLHEKNDASSTVQMAELGAIDALLDLLRSHQCEEESGSLLEVIFNNPRVRE 1752
Query: 1756 MKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLE 1815
+K+ KYAIAPLSQYLLDPQTRSE G+LLAALALGDLSQHEGL+R+S SVSACRALIS+LE
Sbjct: 1753 LKLCKYAIAPLSQYLLDPQTRSEPGRLLAALALGDLSQHEGLSRSSGSVSACRALISVLE 1812
Query: 1816 DQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFL 1875
+Q T+EMK+VAICALQNFVM SRTNRRAVAEAGG+L++QELLLS NAEV+GQAAL+ KFL
Sbjct: 1813 EQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGVLLIQELLLSCNAEVSGQAALMVKFL 1872
Query: 1876 FSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCI 1935
FSNHTLQEYVSNELIRSLTAALER LWSTATIN EVLRTL+VIF NFPKL SEAAT CI
Sbjct: 1873 FSNHTLQEYVSNELIRSLTAALERGLWSTATINIEVLRTLNVIFSNFPKLRASEAATFCI 1932
Query: 1936 PHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPP 1995
PHLVGALKSG E QG VLD L LLR+SW+ M +DVAKSQAMIAAEAIP+LQMLMKTCPP
Sbjct: 1933 PHLVGALKSGVEDVQGLVLDILYLLRHSWTNMSLDVAKSQAMIAAEAIPVLQMLMKTCPP 1992
Query: 1996 SFHERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVI 2048
FH++ADSLLHCLPGCLTV + R NNLKQ+M TTNAFC+LTIGN PPRQTKV+
Sbjct: 1993 RFHDKADSLLHCLPGCLTVNVMRANNLKQSMATTNAFCQLTIGNCPPRQTKVV 2045
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186496022|ref|NP_177870.2| armadillo/beta-catenin-like repeat and C2 domain-containing protein [Arabidopsis thaliana] gi|334183974|ref|NP_001185419.1| armadillo/beta-catenin-like repeat and C2 domain-containing protein [Arabidopsis thaliana] gi|332197859|gb|AEE35980.1| armadillo/beta-catenin-like repeat and C2 domain-containing protein [Arabidopsis thaliana] gi|332197860|gb|AEE35981.1| armadillo/beta-catenin-like repeat and C2 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2827 bits (7329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1414/2047 (69%), Positives = 1683/2047 (82%), Gaps = 2/2047 (0%)
Query: 3 MSKSPSPEPQAHGFSSTSQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQERELIT 62
M K+ P Q S+ Q + + MDDPE M+TVA+ +EQLHA SSPQ++EL T
Sbjct: 1 MLKAFLPGTQEEETLSSLQSGKVDAKMEMDDPEKAMATVAQLIEQLHAKTSSPQDKELTT 60
Query: 63 MRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVL 122
R+L IAK K+EAR LIGS+ QAMPLFIS+LR+GT LAKVNVA+ L VLCKD+DLRLKVL
Sbjct: 61 ARLLGIAKGKREARRLIGSYGQAMPLFISMLRNGTTLAKVNVASILCVLCKDKDLRLKVL 120
Query: 123 LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP 182
LGGCIPPLLS+LKS + +TRKAAAEA+YEVSS G+S+DH+GMKIF+TEGVVPTLWDQL+
Sbjct: 121 LGGCIPPLLSVLKSGTMETRKAAAEAIYEVSSAGISNDHIGMKIFITEGVVPTLWDQLSL 180
Query: 183 KNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLAR 242
K QD VV+G+VTGALRNLCG DGYWR TLE GVDI+V LLSSDN +Q+NAASLLAR
Sbjct: 181 KGNQDKVVEGYVTGALRNLCGVDDGYWRLTLEGSGVDIVVSLLSSDNPNSQANAASLLAR 240
Query: 243 LMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADG 302
L+L+F DSI +++SG VK+L+QL+ Q NDI+VRASAADALEALS+ S +AKK V A G
Sbjct: 241 LVLSFCDSIQKILNSGVVKSLIQLLEQKNDINVRASAADALEALSANSDEAKKCVKDAGG 300
Query: 303 VPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVA 362
V LI AIVAPSKECMQG+ GQ+LQ HAT ALAN++GGM L++YLG++SQSPRL P+
Sbjct: 301 VHALIEAIVAPSKECMQGKHGQSLQEHATGALANVFGGMRHLIIYLGQVSQSPRLTEPIG 360
Query: 363 DIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI 422
D+IGALAYALM+F+Q ++ FD IE ILV LLKP D KL+QER+LEAMASLYGN
Sbjct: 361 DVIGALAYALMIFKQPESSEN-IFDPSVIESILVKLLKPRDTKLIQERILEAMASLYGNS 419
Query: 423 FLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482
LS ++ AEAK+VLI LITMA+ADVRE LI+ L+ LC +VGIWEAIGKREGIQL IS
Sbjct: 420 SLSCYLDDAEAKRVLIALITMASADVRERLIICLSGLCHDKVGIWEAIGKREGIQLFISF 479
Query: 483 LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWI 542
LGLSSEQHQEYAV+++ ILT QVDDSKWA+TAAGGIPPLVQLLE GSQKA+E AA +LW
Sbjct: 480 LGLSSEQHQEYAVEMLKILTAQVDDSKWAVTAAGGIPPLVQLLETGSQKAKEDAACILWN 539
Query: 543 LCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLL 602
LCCHSE+IR CVE AG +PAFLWLLK+GGP Q+ SA L KL+ AD ATINQLLALLL
Sbjct: 540 LCCHSEEIRDCVERAGGIPAFLWLLKTGGPNSQETSAKTLVKLVHTADPATINQLLALLL 599
Query: 603 GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLA 662
GD P+SK VI+VLGHVL+ A QEDLV +G AANKGLRSLV+ L SS EE +E+ ASVLA
Sbjct: 600 GDDPTSKIQVIEVLGHVLSKASQEDLVHRGCAANKGLRSLVESLTSSREETKEHTASVLA 659
Query: 663 DLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIA 722
DLFS RQDICG LATD+I+NP ++LLT+NTQ VA Q ARAL ALSRP K K SYIA
Sbjct: 660 DLFSSRQDICGHLATDDIINPWIKLLTNNTQNVAKQVARALDALSRPVKNNNNKKKSYIA 719
Query: 723 EGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGK 782
EGD+K LIKLAK SSI++AE AV+ALANLLSDPDIAAE L EDVVSA TR+LA+G+ EGK
Sbjct: 720 EGDIKSLIKLAKNSSIESAENAVSALANLLSDPDIAAEALAEDVVSAFTRILADGSPEGK 779
Query: 783 KNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLART 842
+NASRALHQLLK+FPV DVLKG+AQCRF +L+LVDSL ++D++ D + LEVVALLA+T
Sbjct: 780 RNASRALHQLLKNFPVCDVLKGSAQCRFAILSLVDSLKSIDVDSADAFNILEVVALLAKT 839
Query: 843 KQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMA 902
K G+NF+YPPW ALAEVPSS+E LV CLAEG +QDKAIE+LSRLC DQ +L + +++
Sbjct: 840 KSGVNFSYPPWIALAEVPSSLETLVQCLAEGHTLVQDKAIEVLSRLCSDQQFLLSELIVS 899
Query: 903 RSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMM 962
R S+ LADRI+++SSLEVRVG ALL+CAAKE K+ + LD SG+LK L++ALVDM+
Sbjct: 900 RPKSMLVLADRIVNASSLEVRVGSTALLLCAAKEKKQLITETLDQSGFLKLLLHALVDMI 959
Query: 963 KQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNN 1022
K NS+ SL+ EV+TP+G++E+ FQ+ F PDPA ILGGTVALWLL I++S +
Sbjct: 960 KHNSTSFSLETEVQTPKGFLEKNVFQDTGSFYFPDPAKILGGTVALWLLCILTSVDAKSK 1019
Query: 1023 VTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIP 1082
V VMEAG LE L KLA YTS+ QAEFEDTEGIWISAL LAI+FQD N+ S TMRIIP
Sbjct: 1020 VIVMEAGGLEVLVGKLARYTSSAQAEFEDTEGIWISALLLAIMFQDDNVSFSSTTMRIIP 1079
Query: 1083 ALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLV 1142
LA+LL SDE+IDR+FAA AMASLVC+ ++GI L IANSGAV+G+I L+G++ES+ NLV
Sbjct: 1080 TLAVLLGSDELIDRYFAAHAMASLVCTRNRGINLTIANSGAVSGIINLLGYVESEILNLV 1139
Query: 1143 ALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLL 1202
AL+ EF LV+ PD+V+L+ LFEIEDVR+GSTARKSIPLLVD+LRPIPDRPGAP AV++L
Sbjct: 1140 ALANEFSLVKEPDQVILQHLFEIEDVRLGSTARKSIPLLVDLLRPIPDRPGAPQFAVQIL 1199
Query: 1203 TQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLS 1262
+I DGSDTNKL+MAEAG ++ALTKYLSLSPQDSTE I+EL R+LFSN +L + E +LS
Sbjct: 1200 IRIADGSDTNKLLMAEAGAVEALTKYLSLSPQDSTEYAISELLRVLFSNHELRQNEMALS 1259
Query: 1263 SLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEV 1322
SLNQLIAVL LGSR AR SAA AL++LFDAENI++S++A QAV PL+D+L + SE E EV
Sbjct: 1260 SLNQLIAVLRLGSRSARYSAAGALNELFDAENIRNSEIACQAVQPLMDILGSVSESEQEV 1319
Query: 1323 ALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSS-NSSLELKRNAAELCFIMFGNAKI 1381
AL AL+KL+SGNTS LL D++G+LLE++ KILSS +S ELK NAA LC ++F N I
Sbjct: 1320 ALSALIKLSSGNTSNTALLIDVEGSLLENVIKILSSATASEELKINAARLCSVVFSNKNI 1379
Query: 1382 IANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSG 1441
+ AS C++PLI+LMQS+ S VE+AV A + LLDDEQ +EL +++ +LLV LVSG
Sbjct: 1380 RTSASASGCMKPLITLMQSERSAAVEAAVFAIKILLDDEQHLELAAAHNIQELLVGLVSG 1439
Query: 1442 TNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTN 1501
N+ ++EA++ ALIKLGKDR PRKL MV+AGII+ CL+LLP A S+LCS + ELFRILTN
Sbjct: 1440 KNYVIIEASLSALIKLGKDRVPRKLDMVEAGIIERCLELLPGASSSLCSAVVELFRILTN 1499
Query: 1502 SSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIE 1561
S IAR D AK VEPLF VLL+ D +LWGQHSALQALVNILEK Q+L TPS+ I
Sbjct: 1500 SGVIARRPDVAKTVEPLFAVLLRSDLTLWGQHSALQALVNILEKQQTLEAFSFTPSEAIV 1559
Query: 1562 PLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVK 1621
PL+SFLES S AIQQLG ELL+H L E FQQDITT++AVVPLV+LAGIGIL+LQ+TA+K
Sbjct: 1560 PLISFLESSSQAIQQLGAELLSHFLTMEDFQQDITTQSAVVPLVRLAGIGILSLQETAIK 1619
Query: 1622 ALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVP 1681
ALEKIS SWPKAV DA GIFE++KVI+Q+DPQPP LWESAA VLSN+L+++ E +F+V
Sbjct: 1620 ALEKISASWPKAVLDAEGIFELSKVILQEDPQPPLDLWESAAFVLSNILQYDAECFFRVE 1679
Query: 1682 VVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSG 1741
+ VLVK+L ST+EST+ +AL AL++HE+ DASS QM + G IDALLDLLRSHQCEE SG
Sbjct: 1680 LPVLVKLLFSTIESTVLLALKALMLHEKNDASSTVQMAELGAIDALLDLLRSHQCEEESG 1739
Query: 1742 RLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARAS 1801
LLE +FNN R+R++K+ KYAIAPLSQYLLDP TRSE G+LLAALALGDLSQHEGL+R+S
Sbjct: 1740 SLLEVIFNNPRVRELKLCKYAIAPLSQYLLDPHTRSEPGRLLAALALGDLSQHEGLSRSS 1799
Query: 1802 ASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTN 1861
SVSACRALIS+LE+Q T+EMK+VAICALQNFVM SRTNRRAVAEAGG+L++QELLLS N
Sbjct: 1800 GSVSACRALISVLEEQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGVLLIQELLLSCN 1859
Query: 1862 AEVAGQAALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMN 1921
EV+GQAAL+ KFLFSNHTLQEYVSNELIRSLTAALER LWSTATIN EVLRTL+VIF N
Sbjct: 1860 PEVSGQAALMVKFLFSNHTLQEYVSNELIRSLTAALERGLWSTATINIEVLRTLNVIFSN 1919
Query: 1922 FPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAE 1981
FPKL SEAAT CIPHLVGALKSG E QG VLD L LLR+SW+ M IDVAKSQAMIAAE
Sbjct: 1920 FPKLRASEAATFCIPHLVGALKSGVEDVQGLVLDILYLLRHSWTNMSIDVAKSQAMIAAE 1979
Query: 1982 AIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP 2041
AIP+LQMLMKTCPP FH++ADSLLHCLPGCLTV + R NNLKQ+M TTNAFC+LTIGN P
Sbjct: 1980 AIPVLQMLMKTCPPRFHDKADSLLHCLPGCLTVNVMRANNLKQSMATTNAFCQLTIGNCP 2039
Query: 2042 PRQTKVI 2048
PRQTKV+
Sbjct: 2040 PRQTKVV 2046
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2054 | ||||||
| TAIR|locus:2204700 | 2136 | AT1G77460 "AT1G77460" [Arabido | 0.995 | 0.957 | 0.640 | 0.0 | |
| TAIR|locus:2205866 | 2114 | AT1G44120 [Arabidopsis thalian | 0.981 | 0.953 | 0.506 | 0.0 | |
| TAIR|locus:2827868 | 2150 | CSI1 "cellulose synthase-inter | 0.990 | 0.946 | 0.437 | 0.0 | |
| UNIPROTKB|Q5VRH9 | 611 | PUB12 "U-box domain-containing | 0.134 | 0.453 | 0.228 | 0.00058 | |
| TAIR|locus:2017719 | 612 | AT1G23030 [Arabidopsis thalian | 0.082 | 0.276 | 0.253 | 6.5e-09 | |
| TAIR|locus:2154124 | 559 | AT5G62560 [Arabidopsis thalian | 0.061 | 0.227 | 0.316 | 0.00067 | |
| TAIR|locus:2082682 | 632 | PUB14 "plant U-box 14" [Arabid | 0.079 | 0.259 | 0.284 | 1.5e-05 | |
| TAIR|locus:2158252 | 707 | AT5G67340 [Arabidopsis thalian | 0.046 | 0.134 | 0.381 | 6e-08 | |
| TAIR|locus:2096687 | 355 | AT3G01400 [Arabidopsis thalian | 0.103 | 0.597 | 0.284 | 9.5e-08 | |
| TAIR|locus:2102455 | 760 | AT3G54790 [Arabidopsis thalian | 0.047 | 0.127 | 0.346 | 1.1e-07 |
| TAIR|locus:2204700 AT1G77460 "AT1G77460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6516 (2298.8 bits), Expect = 0., P = 0.
Identities = 1311/2047 (64%), Positives = 1567/2047 (76%)
Query: 3 MSKSPSPEPQAHGFSSTSQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQERELIT 62
M K+ P Q S+ Q + + MDDPE M+TVA+ +EQLHA SSPQ++EL T
Sbjct: 1 MLKAFLPGTQEEETLSSLQSGKVDAKMEMDDPEKAMATVAQLIEQLHAKTSSPQDKELTT 60
Query: 63 MRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVL 122
R+L IAK K+EAR LIGS+ QAMPLFIS+LR+GT LAKVNVA+ L VLCKD+DLRLKVL
Sbjct: 61 ARLLGIAKGKREARRLIGSYGQAMPLFISMLRNGTTLAKVNVASILCVLCKDKDLRLKVL 120
Query: 123 LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP 182
LGGCIPPLLS+LKS + +TRKAAAEA+YEVSS G+S+DH+GMKIF+TEGVVPTLWDQL+
Sbjct: 121 LGGCIPPLLSVLKSGTMETRKAAAEAIYEVSSAGISNDHIGMKIFITEGVVPTLWDQLSL 180
Query: 183 KNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGXXXXXXXXXXXXXXXXXXR 242
K QD VV+G+VTGALRNLCG DGYWR TLE GVDI+V R
Sbjct: 181 KGNQDKVVEGYVTGALRNLCGVDDGYWRLTLEGSGVDIVVSLLSSDNPNSQANAASLLAR 240
Query: 243 LMLAFGDSIPTVIDSGAVKALVQLVGQNNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXDG 302
L+L+F DSI +++SG VK+L+QL+ Q NDI G
Sbjct: 241 LVLSFCDSIQKILNSGVVKSLIQLLEQKNDINVRASAADALEALSANSDEAKKCVKDAGG 300
Query: 303 VPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVA 362
V LI AIVAPSKECMQG+ GQ+LQ HAT ALAN++GGM L++YLG++SQSPRL P+
Sbjct: 301 VHALIEAIVAPSKECMQGKHGQSLQEHATGALANVFGGMRHLIIYLGQVSQSPRLTEPIG 360
Query: 363 DIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI 422
D+IGALAYALM+F+Q + FD IE ILV LLKP D KL+QER+LEAMASLYGN
Sbjct: 361 DVIGALAYALMIFKQPES-SENIFDPSVIESILVKLLKPRDTKLIQERILEAMASLYGNS 419
Query: 423 FLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKRXXXXXXXXX 482
LS ++ AEAK+VLI LITMA+ADVRE LI+ L+ LC +VGIWEAIGKR
Sbjct: 420 SLSCYLDDAEAKRVLIALITMASADVRERLIICLSGLCHDKVGIWEAIGKREGIQLFISF 479
Query: 483 XXXXXXXHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWI 542
HQEYAV+++ ILT QVDDSKWA+TAAGGIPPLVQLLE GSQKA+E AA +LW
Sbjct: 480 LGLSSEQHQEYAVEMLKILTAQVDDSKWAVTAAGGIPPLVQLLETGSQKAKEDAACILWN 539
Query: 543 LCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLL 602
LCCHSE+IR CVE AG +PAFLWLLK+GGP Q+ SA L KL+ AD ATINQLLALLL
Sbjct: 540 LCCHSEEIRDCVERAGGIPAFLWLLKTGGPNSQETSAKTLVKLVHTADPATINQLLALLL 599
Query: 603 GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLA 662
GD P+SK VI+VLGHVL+ A QEDLV +G AANKGLRSLV+ L SS EE +E+ ASVLA
Sbjct: 600 GDDPTSKIQVIEVLGHVLSKASQEDLVHRGCAANKGLRSLVESLTSSREETKEHTASVLA 659
Query: 663 DLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIA 722
DLFS RQDICG LATD+I+NP ++LLT+NTQ VA Q ARAL ALSRP K K SYIA
Sbjct: 660 DLFSSRQDICGHLATDDIINPWIKLLTNNTQNVAKQVARALDALSRPVKNNNNKKKSYIA 719
Query: 723 EGDVKPLIKLAKTSSIDXXXXXXXXXXXXXSDPDIAAEVLLEDVVSALTRVLAEGTSEGK 782
EGD+K LIKLAK SSI+ SDPDIAAE L EDVVSA TR+LA+G+ EGK
Sbjct: 720 EGDIKSLIKLAKNSSIESAENAVSALANLLSDPDIAAEALAEDVVSAFTRILADGSPEGK 779
Query: 783 KNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTXXXXXXXXXXXXXRT 842
+NASRALHQLLK+FPV DVLKG+AQCRF +L+LVDSL ++D++ +T
Sbjct: 780 RNASRALHQLLKNFPVCDVLKGSAQCRFAILSLVDSLKSIDVDSADAFNILEVVALLAKT 839
Query: 843 KQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMA 902
K G+NF+YPPW ALAEVPSS+E LV CLAEG +QDKAIE+LSRLC DQ +L + +++
Sbjct: 840 KSGVNFSYPPWIALAEVPSSLETLVQCLAEGHTLVQDKAIEVLSRLCSDQQFLLSELIVS 899
Query: 903 RSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMM 962
R S+ LADRI+++SSLEVRVG ALL+CAAKE K+ + LD SG+LK L++ALVDM+
Sbjct: 900 RPKSMLVLADRIVNASSLEVRVGSTALLLCAAKEKKQLITETLDQSGFLKLLLHALVDMI 959
Query: 963 KQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNN 1022
K NS+ SL+ EV+TP+G++E+ FQ+ F PDPA ILGGTVALWLL I++S +
Sbjct: 960 KHNSTSFSLETEVQTPKGFLEKNVFQDTGSFYFPDPAKILGGTVALWLLCILTSVDAKSK 1019
Query: 1023 VTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIP 1082
V VMEAG LE L KLA YTS+ QAEFEDTEGIWISAL LAI+FQD N+ S TMRIIP
Sbjct: 1020 VIVMEAGGLEVLVGKLARYTSSAQAEFEDTEGIWISALLLAIMFQDDNVSFSSTTMRIIP 1079
Query: 1083 ALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLV 1142
LA+LL SDE+IDR+FAA AMASLVC+ ++GI L IANSGAV+G+I L+G++ES+ NLV
Sbjct: 1080 TLAVLLGSDELIDRYFAAHAMASLVCTRNRGINLTIANSGAVSGIINLLGYVESEILNLV 1139
Query: 1143 ALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLL 1202
AL+ EF LV+ PD+V+L+ LFEIEDVR+GSTARKSIPLLVD+LRPIPDRPGAP AV++L
Sbjct: 1140 ALANEFSLVKEPDQVILQHLFEIEDVRLGSTARKSIPLLVDLLRPIPDRPGAPQFAVQIL 1199
Query: 1203 TQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLS 1262
+I DGSDTNKL+MAEAG ++ALTKYLSLSPQDSTE I+EL R+LFSN +L + E +LS
Sbjct: 1200 IRIADGSDTNKLLMAEAGAVEALTKYLSLSPQDSTEYAISELLRVLFSNHELRQNEMALS 1259
Query: 1263 SLNQLIAVLHXXXXXXXXXXXXXXHQLFDAENIKDSDLAGQAVPPLVDMXXXXXXXXXXX 1322
SLNQLIAVL ++LFDAENI++S++A QAV PL+D+
Sbjct: 1260 SLNQLIAVLRLGSRSARYSAAGALNELFDAENIRNSEIACQAVQPLMDILGSVSESEQEV 1319
Query: 1323 XXXXXXKLTSGNTSKACLLTDIDGNLLESLYKILSS-NSSLELKRNAAELCFIMFGNAKI 1381
KL+SGNTS LL D++G+LLE++ KILSS +S ELK NAA LC ++F N I
Sbjct: 1320 ALSALIKLSSGNTSNTALLIDVEGSLLENVIKILSSATASEELKINAARLCSVVFSNKNI 1379
Query: 1382 IANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSG 1441
+ AS C++PLI+LMQS+ S VE+AV A + LLDDEQ +EL +++ +LLV LVSG
Sbjct: 1380 RTSASASGCMKPLITLMQSERSAAVEAAVFAIKILLDDEQHLELAAAHNIQELLVGLVSG 1439
Query: 1442 TNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTN 1501
N+ ++EA++ ALIKLGKDR PRKL MV+AGII+ CL+LLP A S+LCS + ELFRILTN
Sbjct: 1440 KNYVIIEASLSALIKLGKDRVPRKLDMVEAGIIERCLELLPGASSSLCSAVVELFRILTN 1499
Query: 1502 SSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIE 1561
S IAR D AK VEPLF VLL+ D +LWGQHSALQALVNILEK Q+L TPS+ I
Sbjct: 1500 SGVIARRPDVAKTVEPLFAVLLRSDLTLWGQHSALQALVNILEKQQTLEAFSFTPSEAIV 1559
Query: 1562 PLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVK 1621
PL+SFLES S AIQQLG ELL+H L E FQQDITT++AVVPLV+LAGIGIL+LQ+TA+K
Sbjct: 1560 PLISFLESSSQAIQQLGAELLSHFLTMEDFQQDITTQSAVVPLVRLAGIGILSLQETAIK 1619
Query: 1622 ALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVP 1681
ALEKIS SWPKAV DA GIFE++KVI+Q+DPQPP LWESAA VLSN+L+++ E +F+V
Sbjct: 1620 ALEKISASWPKAVLDAEGIFELSKVILQEDPQPPLDLWESAAFVLSNILQYDAECFFRVE 1679
Query: 1682 VVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSG 1741
+ VLVK+L ST+EST+ +AL AL++HE+ DASS QM + G IDALLDLLRSHQCEE SG
Sbjct: 1680 LPVLVKLLFSTIESTVLLALKALMLHEKNDASSTVQMAELGAIDALLDLLRSHQCEEESG 1739
Query: 1742 RLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKXXXXXXXGDLSQHEGLXXXX 1801
LLE +FNN R+R++K+ KYAIAPLSQYLLDP TRSE G+ GDLSQHEGL
Sbjct: 1740 SLLEVIFNNPRVRELKLCKYAIAPLSQYLLDPHTRSEPGRLLAALALGDLSQHEGLSRSS 1799
Query: 1802 XXXXXXXXLISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTN 1861
LIS+LE+Q T+EMK+VAICALQNFVM SRTNRRAVAEAGG+L++QELLLS N
Sbjct: 1800 GSVSACRALISVLEEQPTEEMKVVAICALQNFVMNSRTNRRAVAEAGGVLLIQELLLSCN 1859
Query: 1862 AEVAGQAALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMN 1921
EV+GQAAL+ KFLFSNHTLQEYVSNELIRSLTAALER LWSTATIN EVLRTL+VIF N
Sbjct: 1860 PEVSGQAALMVKFLFSNHTLQEYVSNELIRSLTAALERGLWSTATINIEVLRTLNVIFSN 1919
Query: 1922 FPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAE 1981
FPKL SEAAT CIPHLVGALKSG E QG VLD L LLR+SW+ M IDVAKSQAMIAAE
Sbjct: 1920 FPKLRASEAATFCIPHLVGALKSGVEDVQGLVLDILYLLRHSWTNMSIDVAKSQAMIAAE 1979
Query: 1982 AIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGP 2041
AIP+LQMLMKTCPP FH++ADSLLHCLPGCLTV + R NNLKQ+M TTNAFC+LTIGN P
Sbjct: 1980 AIPVLQMLMKTCPPRFHDKADSLLHCLPGCLTVNVMRANNLKQSMATTNAFCQLTIGNCP 2039
Query: 2042 PRQTKVI 2048
PRQTKV+
Sbjct: 2040 PRQTKVV 2046
|
|
| TAIR|locus:2205866 AT1G44120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4986 (1760.2 bits), Expect = 0., P = 0.
Identities = 1028/2031 (50%), Positives = 1363/2031 (67%)
Query: 28 TSAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMP 87
TS MDDPE T+ + +EQLHA SS QE+EL T R+L +AK KKE R +I + AMP
Sbjct: 2 TSEMDDPEKAAVTITRLIEQLHAKKSSAQEKELSTARLLGLAKGKKECRKIISQNVNAMP 61
Query: 88 LFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAE 147
FIS+LRSGT LAK+N A+ L+VLCKD+++R K+L+GGCIPPLLSLLKS+S D ++ AE
Sbjct: 62 AFISLLRSGTLLAKLNSASVLTVLCKDKNVRSKILIGGCIPPLLSLLKSDSVDAKRVVAE 121
Query: 148 ALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDG 207
A+YEVS G+ D+VG KIFVTEGVVP+LWDQL KQD V+G + GALRNLCGDKDG
Sbjct: 122 AIYEVSLCGMDGDNVGTKIFVTEGVVPSLWDQLKTGKKQDKTVEGHLVGALRNLCGDKDG 181
Query: 208 YWRATLEAGGVDIIVGXXXXXXXXXXXXXXXXXXRLMLAFGDSIPTVIDSGAVKALVQLV 267
+W TLE GGVDII+ RL+ F SI V +SGAV+ LVQL+
Sbjct: 182 FWALTLEDGGVDIILKLLQSSNPVSQSNAASLLARLIRIFTSSISKVEESGAVQVLVQLL 241
Query: 268 GQNNDIXXXXXXXXXXXXXXXXXXXXXXXXXXXDGVPVLIGAIVAPSKECMQGQRGQALQ 327
G+ N + DG+ +LI A+VA SKE ++ + + LQ
Sbjct: 242 GEENSVFVRASVVNALEAITSKSEEAITVARDLDGIHLLISAVVASSKESVEEETERVLQ 301
Query: 328 GHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFD 387
+ T+ALAN+ GGM L+VYLG LS SPRL P+ADI+GALAYAL F+ G E FD
Sbjct: 302 SYGTQALANLCGGMSGLIVYLGGLSLSPRLTEPIADILGALAYALRKFQLSCGDTREAFD 361
Query: 388 ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATAD 447
E ILV LLKP D +L+ ER+LEAM SL+GN+ LS+ +++ +AK+VL+ L +AT
Sbjct: 362 PTLTEGILVKLLKPRDTQLIHERILEAMESLFGNVDLSKLLNNVDAKRVLVCLTILATDG 421
Query: 448 VREYLILSLTKLCRREVGIWEAIGKRXXXXXXXXXXXXXXXXHQEYAVQLIAILTEQVDD 507
RE +I L+ LC+ +W+AIGKR HQE +V+ +AILT+ V++
Sbjct: 422 PRERMITCLSNLCKHG-DVWDAIGKREGIQILIPYLGLSSEQHQELSVEFLAILTDNVEE 480
Query: 508 SKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566
S+WA+T+AGGIPPL+Q+LE G SQKA++ A V+ LCCHSE+IR CVE AGA+PA L L
Sbjct: 481 SRWAVTSAGGIPPLLQILETGVSQKAKDDAVRVILNLCCHSEEIRLCVEKAGAIPALLGL 540
Query: 567 LKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQE 626
LK+GGPK Q++SA L KLI+ AD + I Q+ AL LGD+P SK H+I+VLGHVL A E
Sbjct: 541 LKNGGPKSQESSANTLLKLIKTADPSVIEQVQALFLGDAPKSKTHLIRVLGHVLASASLE 600
Query: 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMR 686
+ V KGSAAN GLRSLVQ L SSNE+ +E AASVLADLFS R+D+CG L DE NPC +
Sbjct: 601 EFVTKGSAANNGLRSLVQRLASSNEKMKENAASVLADLFSSRKDLCGGLGFDEDDNPCTK 660
Query: 687 LLTSNTQMVATQSARALGALSRPTKTKT-TNKMSYIAEGDVKPLIKLAKTSSIDXXXXXX 745
LL+ NT VATQ A ALG+LS PTK KT T K+S +KPLIK AKT+ I+
Sbjct: 661 LLSGNTHAVATQLAHALGSLSNPTKKKTATKKLSGPEVEVIKPLIKSAKTNPIESTENPM 720
Query: 746 XXXXXXXSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGN 805
SDP++AAE L +DVVSALTRVL EGT +GK+NAS ALHQLLKHF V DV KGN
Sbjct: 721 STLANLLSDPNVAAEALNDDVVSALTRVLREGTLQGKRNASHALHQLLKHFQVSDVFKGN 780
Query: 806 AQCRFVVLTLVDSLNAMDMNGTXXXXXXXXXXXXXRTKQGLNFTYPPWAALAEVPSSIEP 865
QCRF V L+D LNA D+N + + K G N ++ P++A EVPS+++
Sbjct: 781 EQCRFAVSELIDLLNATDLNNSAFIDVLEVLSLLAKAKYGANLSHNPFSAFGEVPSNLDS 840
Query: 866 LVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVG 925
LV LAEG P +QDKAIEILSR C Q +LG L+ +S SI +LA+R ++SSS E++VG
Sbjct: 841 LVRGLAEGHPLVQDKAIEILSRFCKTQFILLGRLLVTQSKSISSLANRTINSSSPEIKVG 900
Query: 926 GAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERT 985
GA LL+CAAK +A++ SGYLK L+ L+DM KQNS +S IE++ PR ++
Sbjct: 901 GAILLVCAAKNDITLWAEAVEQSGYLKTLVNTLLDMSKQNSKSASYGIEIQRPRSFITSN 960
Query: 986 AFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNP 1045
DD ++ DP TILG T ++WLL II S +N + VME LE +++ L SN
Sbjct: 961 LCLRMDDSEMVDPVTILGSTASMWLLSIICSSHPSNRLVVMEGNGLEIIAENLQRNKSNT 1020
Query: 1046 QAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMAS 1105
Q D+E WI+ FLA++ Q+ +V SPAT I+ LA ++S+++ID +F AQ +A+
Sbjct: 1021 QENSSDSEEKWIAMSFLAVMSQEPKVVSSPATENILQTLAPFMQSEQMIDGYFTAQVLAA 1080
Query: 1106 LVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEI 1165
LV + I I NS V I L+G ESDT +L AL+EE LV+ P E LE LFE
Sbjct: 1081 LVRHKNDKTISEIMNSDIVETTINLVGCEESDTRSLCALAEELSLVQNPYEATLEVLFEN 1140
Query: 1166 EDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDAL 1225
E VR GS +K IPLLV++L+P D+ G PVA+RLL +I D D +KL++AEAG LDAL
Sbjct: 1141 ERVRSGSFTKKCIPLLVNLLKPYADKVGGIPVAIRLLRRIADNDDLSKLLIAEAGALDAL 1200
Query: 1226 TKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHXXXXXXXXXXXXX 1285
KYLSLSPQDSTE T++EL LF +P++ R++ ++SS+ QLI +LH
Sbjct: 1201 AKYLSLSPQDSTEITVSELLESLFRSPEITRHKTAISSMKQLIGILHLASRSTRYNAARV 1260
Query: 1286 XHQLFDAENIKDSDLAGQAVPPLVDMXXXXXXXXXXXXXXXXXKLTSGNTSKACLLTDID 1345
+LF +E+I+DS+LA +A+ PL++M KLT G + +LT ++
Sbjct: 1261 LCELFSSEHIRDSELAWKALSPLIEMLNTTLESERVAALTALVKLTMGINPRPDILTSLE 1320
Query: 1346 GNLLESLYKILS-SNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSI 1404
GN L+++YKILS +SSLE K +AA +C +F N + + A+ CI LISL+++ S
Sbjct: 1321 GNPLDNIYKILSLDSSSLESKTSAARICRFLFTNEGLRTSTSAACCIVSLISLIRTGKST 1380
Query: 1405 VVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPR 1464
+E+ + A +RLLD ++ VE+ E +D V+L V+ N+ + EA + L K+ KD TPR
Sbjct: 1381 AIEAGMFALDRLLDIKRFVEVAEEHDCVNLFYGYVASENYLISEAAISCLTKMAKDNTPR 1440
Query: 1465 KLQMVKAGIIDNCLDLLPVAP-SALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLL 1523
K+ ++K GII+ C+ L +P S+LCS IA+LFR+LTN IARS DA K+V+PL ++LL
Sbjct: 1441 KMDLIKMGIIEKCISQLSKSPPSSLCSVIADLFRVLTNVGVIARSQDAIKMVQPLLLILL 1500
Query: 1524 QPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLT 1583
+ D GQ LQA+ NILEKP L +LK+ S +I PL+ LES S A++ T LLT
Sbjct: 1501 RQDLDFQGQLGGLQAIANILEKPMVLESLKIASSTIIMPLIPLLESESIAVKNATTILLT 1560
Query: 1584 HLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEI 1643
LL + FQ++ITTKN + PLV+L GI + NLQ+ A+ LE+ S +WPK VAD GGI E+
Sbjct: 1561 SLLEMQRFQEEITTKNLIAPLVKLVGIRVRNLQEIALMGLERSSVTWPKEVADTGGIQEL 1620
Query: 1644 AKVIIQDDPQPPHSLWESAALVLSNVLRFNTE-YYFKVPVVVLVKMLHSTLESTITVALN 1702
+KVII +DPQ P LWESAA +L N+LR N E YYF V + VL KML ST EST+ +A++
Sbjct: 1621 SKVIIDEDPQLPVYLWESAAFILCNILRINPEHYYFTVTIPVLSKMLFSTAESTVILAID 1680
Query: 1703 ALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYA 1762
AL+I E D+SS ++M ++ +DALLDLLRSH CEE S RLLE + N ++R+ K+ ++
Sbjct: 1681 ALIIRENQDSSSVQEMAESSALDALLDLLRSHHCEELSARLLELILRNPKVRETKICQFV 1740
Query: 1763 IAPLSQYLLDPQTRSESGKXXXXXXXGDLSQHEGLXXXXXXXXXXXXLISLLEDQSTDEM 1822
+ PLS+Y+LDP T SES K GD+SQHEGL LISLLED+ ++EM
Sbjct: 1741 LTPLSEYILDPDTISESAKILIAMALGDISQHEGLAKATDSPVACRALISLLEDEPSEEM 1800
Query: 1823 KMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQ 1882
+MV + AL+NF M SRT+R+A+AEAGG+ VQE+L S+N +V+ QAAL+ K LFSNHTLQ
Sbjct: 1801 QMVVMRALENFAMHSRTSRKAMAEAGGVYWVQEMLRSSNPQVSTQAALIIKSLFSNHTLQ 1860
Query: 1883 EYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGAL 1942
EYVS E+I+SLT A+ERE W+T IN E++RTL+ I FPKL +SEAAT CIPHL+GAL
Sbjct: 1861 EYVSGEIIKSLTNAMEREFWTTTAINVEIVRTLNTILTTFPKLRSSEAATACIPHLIGAL 1920
Query: 1943 KSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKT-----CPPSF 1997
KSG + A+ S +DT+ LR SW+TMP + A+SQA++AA+AIP+LQ++MK+ P SF
Sbjct: 1921 KSGEQEARDSAMDTIYTLRQSWTTMPTETARSQAVLAADAIPVLQLMMKSKLKSPAPSSF 1980
Query: 1998 HERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVI 2048
HER +SLL+CLPG LTV IKRG+NLK++ NAFCRL I N P ++TKV+
Sbjct: 1981 HERGNSLLNCLPGSLTVAIKRGDNLKRS----NAFCRLIIDNCPTKKTKVV 2027
|
|
| TAIR|locus:2827868 CSI1 "cellulose synthase-interactive protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4303 (1519.8 bits), Expect = 0., P = 0.
Identities = 901/2059 (43%), Positives = 1311/2059 (63%)
Query: 1 MQMSKSPSPEPQAHGFSSTSQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQEREL 60
M+M S P P H ST++ + T++M+DP+ T+++VA+ +EQL SS QERE
Sbjct: 28 MKMHDSEPPTP--H---STTKMSLRDRTTSMEDPDGTLASVAQCIEQLRQGSSSAQEREY 82
Query: 61 ITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLK 120
++L + + ++ A +GSH+QA+P+ +S+LRSG+ K+ A L LCK+ +LR+K
Sbjct: 83 CLKQLLDLIEMRENAFSAVGSHSQAVPVLVSLLRSGSVGVKIQAATVLGSLCKENELRVK 142
Query: 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180
VLLGGCIPPLL LLKS S + + AAA+ +Y VS GG+ D HVG KIF TEGVVP LWDQL
Sbjct: 143 VLLGGCIPPLLGLLKSSSVEGQIAAAKTIYAVSEGGVKD-HVGSKIFSTEGVVPVLWDQL 201
Query: 181 NPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGXXXXXXXXXXXXXXXXX 240
NK+ V G +TGAL+NL +G+W T+ AGGVD++V
Sbjct: 202 RSGNKKGEV-DGLLTGALKNLSSTTEGFWSETIRAGGVDVLVKLLTSGQSSTLSNVCFLL 260
Query: 241 XRLMLAFGDSIPTVIDSGAVKALVQLVGQNNDIXXXXXXXXXXXXXXXXXXXXXXXXXXX 300
+M+ +V+ + K L++L+G N+
Sbjct: 261 ACMMMEDASVCSSVLTADITKQLLKLLGSGNEAPVRAEAAAALKSLSAQSKEAKREIANS 320
Query: 301 DGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360
+G+PVLI A +APSKE MQG+ QALQ +A ALANI GG+ ++ LG+ +S A
Sbjct: 321 NGIPVLINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPAQ 380
Query: 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG 420
AD +GALA ALM+++ K+ D +E L+ KP LVQER +EA+ASLYG
Sbjct: 381 TADTLGALASALMIYDGKAETT-RASDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYG 439
Query: 421 NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKRXXXXXXX 480
N LS +S+++AK++L+GLITMA +V++ L+ +L LC E +W+A+ R
Sbjct: 440 NSILSVKLSNSDAKRLLVGLITMAVNEVQDELVKALLMLCNHEGSLWQALQGREGIQLLI 499
Query: 481 XXXXXXXXXHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVL 540
QE AV L+ +L+ + D+SKWAITAAGGIPPLVQ+LE GS KARE +A +L
Sbjct: 500 SLLGLSSEQQQECAVALLCLLSNENDESKWAITAAGGIPPLVQILETGSAKAREDSATIL 559
Query: 541 WILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLAL 600
LC HSEDIRACVESA AVPA LWLLK+G P G++ +A L LI +D+ATI+QL AL
Sbjct: 560 RNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTAL 619
Query: 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660
L D P SK +V+ L +L++ D++++GSA+N + +++++++S EE Q +AS
Sbjct: 620 LTSDLPESKIYVLDALKSMLSVVPFNDMLREGSASNDAIETMIKLMSSGKEETQANSASA 679
Query: 661 LADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSY 720
LA +F R+D+ S + + ++LL +++ + +S R L A+ K N+
Sbjct: 680 LAAIFQSRKDLRESALALKTLLSAIKLLNVDSERILVESCRCLAAILLSIKE---NRDVA 736
Query: 721 IAEGDVKP-LIKLAKTSSIDXXXXXXXXXXXXXSDPDIAAEVLLEDVVSALTRVLAEGTS 779
I+ + P ++ LA +S ++ D +++ +V++ED++ + TR+L EGT
Sbjct: 737 ISAREALPTIVSLANSSVLEVAEQGMCALANLILDSEVSEKVIVEDIILSATRILREGTV 796
Query: 780 EGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTXXXXXXXXXXXX 839
GK A+ A+ +LL + L + VLTLV L + D G
Sbjct: 797 SGKTLAAAAIARLLSRRRIDSALTDSVNRAGTVLTLVSLLESAD--GRSDAISEALDALA 854
Query: 840 XRTKQGLNFTYPP-WAALAEVPSSIEPLVCCLAE-GPPPLQDKAIEILSRLCGDQPAVLG 897
++ G N P WA LAE P+S+ P+V + P LQDKAIE+LSRLC DQP VLG
Sbjct: 855 IFSRSGANGNVKPAWAVLAESPNSMAPIVSSIVSVANPSLQDKAIEVLSRLCRDQPIVLG 914
Query: 898 DFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYA 957
+ + + ++A R++++ ++++GGAA++ICAAK ++ ++ L+ + + A
Sbjct: 915 NMVNNARDCVSSIAKRVINTRDPKIKIGGAAIIICAAKVDDQKMIENLNETQLCAKFVQA 974
Query: 958 LVDMMK--QNSSCSSLD---IEVRTPRGYMERTAFQEADDFDVPDPATILGG-TVALWLL 1011
LV ++ Q+ D I + P+ E + ++ + AT++ G +A+WLL
Sbjct: 975 LVGILDSVQDQEKDEKDKICICIH-PKEKEEDEEEEATENREGSTGATVISGDNLAIWLL 1033
Query: 1012 LIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANI 1071
++S + ++E+ +E ++D++ + QA+ + IW+ AL LAILFQD I
Sbjct: 1034 SVLSCHDEKSRAVILESEGIELITDRIGNRFL--QADNGEDANIWVCALLLAILFQDREI 1091
Query: 1072 VLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLI 1131
+ ATM+ +P L+ L++S+E DR+FAAQA+ASLVC+GS+G +L++ANSGA AG I+L+
Sbjct: 1092 TRAHATMKAVPVLSNLVKSEEYADRYFAAQALASLVCNGSRGTLLSVANSGAAAGFISLL 1151
Query: 1132 GHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDR 1191
G + D L+ LS+EF LVRYPD+V LE+LF +ED+RVG+T+RK+IPLLV++L+PIPDR
Sbjct: 1152 GCSDDDIKELLQLSQEFTLVRYPDQVALERLFRVEDIRVGATSRKAIPLLVELLKPIPDR 1211
Query: 1192 PGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSN 1251
PGAP +++ LLTQ+ N ++M E+G L+ L+KYLSL PQD E T L ILFS+
Sbjct: 1212 PGAPLLSLNLLTQLAGDCPQNMIVMVESGALEGLSKYLSLGPQDEQEEAATGLLGILFSS 1271
Query: 1252 PDLIRYEASLSSLNQLIAVLHXXXXXXXXXXXXXXHQLFDAENIKDSDLAGQAVPPLVDM 1311
++ R+E++ +++QL+AVL LF A++I++++ + QAV PLV++
Sbjct: 1272 AEIRRHESAFGAVSQLVAVLRLGGRGARYSAAKALDSLFTADHIRNAESSRQAVQPLVEI 1331
Query: 1312 XXXXXXXXXXXXXXXXXKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAEL 1371
+L S N S+A + D++ N ++ L +ILSSN ++ELK +AAEL
Sbjct: 1332 LNTGSEREQHAAIAALVRLLSDNPSRALAVADVEMNAVDVLCRILSSNYTMELKGDAAEL 1391
Query: 1372 CFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDV 1431
C+++F N +I + A+ C++PL+SL+ ++ S S V A ++L+DDEQ ELV +
Sbjct: 1392 CYVLFANTRIRSTVAAARCVEPLVSLLVTEFSPAQHSVVRALDKLVDDEQLAELVAAHGA 1451
Query: 1432 VDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCST 1491
V LV L+ G N+ L EA AL+KLGKDR KL+MVKAG+ID LD+L AP LC+
Sbjct: 1452 VVPLVGLLYGKNYVLHEAISRALVKLGKDRPACKLEMVKAGVIDCVLDILHEAPDFLCAA 1511
Query: 1492 IAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVT 1551
+EL RILTN++ IA+ AAK+VEPLF +L + +F GQHSALQ LVNILE PQ
Sbjct: 1512 FSELLRILTNNATIAKGQSAAKVVEPLFHLLTRLEFGADGQHSALQVLVNILEHPQCRAD 1571
Query: 1552 LKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIG 1611
LTP QVIEPL+ LESPS A+QQL ELL+HLL +EH Q+D T+ A+ PL+ + G G
Sbjct: 1572 YTLTPHQVIEPLIPLLESPSPAVQQLAAELLSHLLYEEHLQKDPLTQLAIGPLIHVLGSG 1631
Query: 1612 ILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLR 1671
I LQQ AVKAL I+ +WP +A GG+ E++KVI+Q DP + LWESAA +L +L+
Sbjct: 1632 IHLLQQRAVKALVSIALTWPNEIAKEGGVSELSKVILQADPSLSNVLWESAASILVIILQ 1691
Query: 1672 FNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLL 1731
F++E+Y +VPV VLV++L S E+T+ ALNALL+ E D +SAE M ++G I+ALLDLL
Sbjct: 1692 FSSEFYLEVPVAVLVRLLRSASENTVVGALNALLVLESDDGTSAESMAESGAIEALLDLL 1751
Query: 1732 RSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKXXXXXXXGDL 1791
RSHQCE+T+ RLLE L NN +IR K +K AI PLSQYLLDPQT+++ + GDL
Sbjct: 1752 RSHQCEDTAARLLEVLLNNVKIRDSKATKTAILPLSQYLLDPQTQAQQARLLATLALGDL 1811
Query: 1792 SQHEGLXXXXXXXXXXXXLISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGIL 1851
Q+E L L+++LE+Q T+EMK+VAICALQN VM SR+N+RAVAEAGG+
Sbjct: 1812 FQNEALARSTDAASACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQ 1871
Query: 1852 VVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEV 1911
VV +L+ S++ E + QAA+ K LFSNHT+QEY S+E +R++TAA+E++LW+T T+N+E
Sbjct: 1872 VVLDLISSSDPETSVQAAMFVKLLFSNHTVQEYASSETVRAITAAIEKDLWATGTVNDEY 1931
Query: 1912 LRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDV 1971
L+ L+ +F NFP+L +E ATL IPHLV +LK+GSEA Q + LD L LLR +WS P +V
Sbjct: 1932 LKALNSLFNNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEV 1991
Query: 1972 AKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQTMGTTNA 2031
+++Q++ AA+AIP+LQ L+++ PP F E+A+ LL CLPG L VTIKRGNN+KQ++G +
Sbjct: 1992 SRAQSVAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVTIKRGNNMKQSVGNPSV 2051
Query: 2032 FCRLTIGNGPPRQTKVIFT 2050
FC++T+GN PPRQTKVI T
Sbjct: 2052 FCKITLGNNPPRQTKVIST 2070
|
|
| UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 68/298 (22%), Positives = 127/298 (42%)
Query: 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQD 576
G+ L+ L +G+Q + AA + +L + + R C+ AGA+P + LL S P+ Q+
Sbjct: 324 GLVSLMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQE 383
Query: 577 ASAMALTKLI-----RAA--DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLV 629
+ AL L +A+ DS I +++ +L S ++ + L + + E+ V
Sbjct: 384 HAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSMETRENAAATLFSL--SVVDENKV 441
Query: 630 QKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT 689
G+A + L+ +L + ++ AA+ + +L + + ++ +++ M L
Sbjct: 442 TIGAAG--AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIH-LMNFLV 498
Query: 690 SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGD-VKPLIKLAKTSSI-DXXXXXXXX 747
T + ++ L L+ + K IA + + PL+++ KT S +
Sbjct: 499 DPTGGMIDEALSLLSILAGNPEGKIV-----IARSEPIPPLVEVIKTGSPRNRENAAAIL 553
Query: 748 XXXXXSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGN 805
+D + V AL + GT K+ AS L L H D LKGN
Sbjct: 554 WLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSILE--LMHQANEDSLKGN 609
|
|
| TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 121 (47.7 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 48/189 (25%), Positives = 92/189 (48%)
Query: 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGT 97
MS + +++L + S ++R I +++K + R+LI + A A+P+ +++L S
Sbjct: 330 MSVIRALVQRLSSR--STEDRRNAVSEIRSLSKRSTDNRILI-AEAGAIPVLVNLLTSED 386
Query: 98 PLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGL 157
+ N + L E+ + ++ G + ++ +L++ + + R+ AA L+ +S L
Sbjct: 387 VATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLS---L 443
Query: 158 SDDHVGMKIFVT-EGVVPTLWDQLN---PKNKQDNVVQGFVTGALRNLCGDKDGYWRATL 213
+D++ KI + G +P L D L P+ K+D AL NLC RA +
Sbjct: 444 ADEN---KIIIGGSGAIPALVDLLENGTPRGKKDAAT------ALFNLCIYHGNKGRA-V 493
Query: 214 EAGGVDIIV 222
AG V +V
Sbjct: 494 RAGIVTALV 502
|
|
| TAIR|locus:2154124 AT5G62560 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 0.00067, P = 0.00067
Identities = 44/139 (31%), Positives = 69/139 (49%)
Query: 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKA 144
+PL I +L+SGT A+ +VA L L +++ ++ + + G + PLL L+S ES R+
Sbjct: 319 VPLLIDVLKSGTTEAQEHVAGALFSLALEDENKMVIGVLGAVEPLLHALRSSESERARQD 378
Query: 145 AAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204
AA ALY +S + + + V G VPTL + + ++ L NL
Sbjct: 379 AALALYHLSL--IPSNRTRL---VRAGAVPTLLSMVRSGDSTSRILL-----VLCNLAAC 428
Query: 205 KDGYWRATLEAGGVDIIVG 223
DG A L+ V I+VG
Sbjct: 429 PDGKG-AMLDGNAVAILVG 446
|
|
| TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 142 (55.0 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 51/179 (28%), Positives = 91/179 (50%)
Query: 491 QEYAVQLIAILTEQVDD-SKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED 549
QE++V A+L +++ +K AI AG I +V++L+ GS +ARE AA L+ L E+
Sbjct: 404 QEHSVT--ALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDEN 461
Query: 550 IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLI-------RAADSATINQLLALLL 602
+ + +AGA+ A + LL+ G +G+ +A A+ L RA ++ L LL
Sbjct: 462 -KVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLK 520
Query: 603 GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVL 661
+ +L + T QE + A + + LV+++ + + N+E AA++L
Sbjct: 521 DAGGGMVDEALAILAILSTN--QEG--KTAIAEAESIPVLVEIIRTGSPRNRENAAAIL 575
|
|
| TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 37/97 (38%), Positives = 51/97 (52%)
Query: 492 EYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551
E AV ++A L V + K AI GGIP LV+++E GS + +E A L LC HS
Sbjct: 604 EKAVVVLANLAT-VREGKIAIGEEGGIPVLVEVVELGSARGKENATAALLQLCTHSPKFC 662
Query: 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588
V G +P + L KSG +G++ A L K +A
Sbjct: 663 NNVIREGVIPPLVALTKSGTARGKE-KAQNLLKYFKA 698
|
|
| TAIR|locus:2096687 AT3G01400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 66/232 (28%), Positives = 112/232 (48%)
Query: 491 QEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI 550
QEY V I L+ D++K +I ++G I PLV+ L+ G+ A+E AA L L E+
Sbjct: 122 QEYGVTAILNLS-LCDENKESIASSGAIKPLVRALKMGTPTAKENAACALLRLS-QIEEN 179
Query: 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL-------IRAADSATINQLLALL-- 601
+ + +GA+P + LL++GG + + ++ AL L IRA S + L+ L+
Sbjct: 180 KVAIGRSGAIPLLVNLLETGGFRAKKDASTALYSLCSAKENKIRAVQSGIMKPLVELMAD 239
Query: 602 LGDSPSSK-AHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660
G + K A V+ +L V + +V++G G+ LV+++ + +E A S+
Sbjct: 240 FGSNMVDKSAFVMSLLMSVPES--KPAIVEEG-----GVPVLVEIVEVGTQRQKEMAVSI 292
Query: 661 LADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712
L L +A + + P + L + T A Q A AL L R ++
Sbjct: 293 LLQLCEESVVYRTMVAREGAIPPLVALSQAGTSR-AKQKAEALIELLRQPRS 343
|
|
| TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 34/98 (34%), Positives = 53/98 (54%)
Query: 494 AVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553
AV L+A L+ V + + AI GGIP LV+ ++ GSQ+ +E AA VL LC +S
Sbjct: 657 AVALLANLSA-VGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKFCTL 715
Query: 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591
V GA+P + L +SG + ++ + L+ D+
Sbjct: 716 VLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRNQRDA 753
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2054 | |||
| PLN03200 | 2102 | PLN03200, PLN03200, cellulose synthase-interactive | 0.0 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-12 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 6e-10 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 7e-09 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 4e-08 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-07 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-06 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 4e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 7e-05 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-04 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 0.001 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 0.002 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 0.003 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 0.003 |
| >gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Score = 3443 bits (8929), Expect = 0.0
Identities = 1415/2022 (69%), Positives = 1687/2022 (83%), Gaps = 4/2022 (0%)
Query: 27 GTSAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAM 86
TS MDDP+ T+++VA+ +EQL A SSPQE+EL T R+L +AK ++EAR IGSH+QAM
Sbjct: 1 RTSEMDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAM 60
Query: 87 PLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAA 146
PL +S+LRSGT AKVN AA L VLCK+EDLR+KVLLGGCIPPLLSLLKS S + +KAAA
Sbjct: 61 PLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAA 120
Query: 147 EALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206
EA+Y VSSGGLSD HVG KIF TEGVVP+LWDQL P NKQD VV+G +TGALRNLCG D
Sbjct: 121 EAIYAVSSGGLSD-HVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTD 179
Query: 207 GYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQL 266
G+W ATLEAGGVDI+V LLSS N+ AQ+NAASLLARLM+AF SI V+D+GAVK L++L
Sbjct: 180 GFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKL 239
Query: 267 VGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQAL 326
+GQ N++SVRA AA ALEALSS+S +AK+A+ A G+P LI A VAPSKE MQG+ QAL
Sbjct: 240 LGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQAL 299
Query: 327 QGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPF 386
Q +A ALANI GGM AL++YLGELS+SPR AP+AD +GALAYALMVF+ + F
Sbjct: 300 QENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAE-STRAF 358
Query: 387 DARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATA 446
D IE ILV LLKP D KLVQER++EA+ASLYGN +LS+ ++HAEAKKVL+GLITMATA
Sbjct: 359 DPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATA 418
Query: 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVD 506
DV+E LI +L+ LC + G+WEA+G REG+QLLISLLGLSSEQ QEYAV L+AILT++VD
Sbjct: 419 DVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVD 478
Query: 507 DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566
+SKWAITAAGGIPPLVQLLE GSQKA+E +A VLW LCCHSEDIRACVESAGAVPA LWL
Sbjct: 479 ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL 538
Query: 567 LKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQE 626
LK+GGPKGQ+ +A LTKL+R AD+ATI+QL ALLLGD P SK HV+ VLGHVL++A E
Sbjct: 539 LKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLE 598
Query: 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMR 686
DLV++GSAAN LR+L+Q+L+SS EE QE AASVLAD+FS RQD+C SLATDEI+NPC++
Sbjct: 599 DLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIK 658
Query: 687 LLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVA 746
LLT+NT+ VATQSARAL ALSR K K+SY AE +KPLIKLAK+SSI+ AE AV
Sbjct: 659 LLTNNTEAVATQSARALAALSRSIKE--NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVC 716
Query: 747 ALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNA 806
ALANLLSDP++AAE L ED++ LTRVL EGT EGK+NA+RAL QLLKHFPV DVLK +
Sbjct: 717 ALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSV 776
Query: 807 QCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPL 866
QCR VL LVD LN+ D++ + ++ALE +ALLARTK G NF++PPWA LAEVPSS+EPL
Sbjct: 777 QCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPL 836
Query: 867 VCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGG 926
V CLAEG P +QDKAIEILSRLC DQP VLGD + S I +LADRI++SSSLEV++GG
Sbjct: 837 VRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGG 896
Query: 927 AALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTA 986
ALLICAAKEH++ M+ALD SGYLK LI ALVDM+KQNS SL IE++TPRG++E
Sbjct: 897 TALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNL 956
Query: 987 FQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQ 1046
F + DDF+VPDPATILGGTVALWLL +I+S + + +MEAG +E L++KLASYTSN Q
Sbjct: 957 FADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQ 1016
Query: 1047 AEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASL 1106
AEFED+E IWISAL LAILFQD ++V +PATMR IP+LA LL+S+E IDR+FAAQA+ASL
Sbjct: 1017 AEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASL 1076
Query: 1107 VCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIE 1166
VC+GS+G +LA+ANSGAV GLI+L+G ESD NLVALSEEF LVR PD+V LE+LF +E
Sbjct: 1077 VCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVE 1136
Query: 1167 DVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALT 1226
D+RVG+TARK+IPLLVD+L+PIPDRPGAPP+A+ LLTQ+ +GSD NKL MAEAG LDALT
Sbjct: 1137 DIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALT 1196
Query: 1227 KYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARAL 1286
KYLSL PQDSTE +EL RILFS+P+L R+E++ ++NQL+AVL LGSR AR SAARAL
Sbjct: 1197 KYLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARAL 1256
Query: 1287 HQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDG 1346
+LF AE+I+DS+LA QAV PLV+ML+ SE E A+ AL+KL+SGN SKA + D++G
Sbjct: 1257 QELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEG 1316
Query: 1347 NLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVV 1406
N LE+L KILSS+SSLELK +AAELC ++F N +I + P A+ CI+PLISL+ S+ S
Sbjct: 1317 NALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQ 1376
Query: 1407 ESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKL 1466
E+ VCA +RLLDDEQ ELV + V LV LV GTN+ L EA + ALIKLGKDR P KL
Sbjct: 1377 EAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKL 1436
Query: 1467 QMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPD 1526
MVKAGII+ LD+LP AP +LCS IAEL RILTN+S+IA+ AAK+VEPLF++L +PD
Sbjct: 1437 DMVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPD 1496
Query: 1527 FSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLL 1586
WGQHSALQALVNILEKPQ L +L LTPSQ IEPL+ LESPS A+QQL ELL+HLL
Sbjct: 1497 LGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLL 1556
Query: 1587 AQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKV 1646
A+EHFQQDITT+NAVVPLV+LAGIGIL+LQQ AVKALE IS SWPKAVADAGGIFE++KV
Sbjct: 1557 AEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESISLSWPKAVADAGGIFELSKV 1616
Query: 1647 IIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLI 1706
I+Q DPQPPH+LWESAA VLSN+LRF++EYYF+VPV VLVK+L ST EST+ VALNALL+
Sbjct: 1617 ILQADPQPPHALWESAASVLSNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALLV 1676
Query: 1707 HERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPL 1766
ER D+SSAEQM ++G I+ALL+LLRSHQCEE + RLLEALFNN ++R+MK +KYAIAPL
Sbjct: 1677 LERDDSSSAEQMAESGAIEALLELLRSHQCEEAAARLLEALFNNVKVREMKATKYAIAPL 1736
Query: 1767 SQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVA 1826
SQYLLDPQTRS+ +LLAALALGDL QHEGLAR++ +VSACRAL+SLLEDQ T+EMKMVA
Sbjct: 1737 SQYLLDPQTRSQQARLLAALALGDLFQHEGLARSTDAVSACRALVSLLEDQPTEEMKMVA 1796
Query: 1827 ICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVS 1886
ICALQN VM SRTN+RAVAEAGG+ VVQELLLS+N + +GQAALL K LFSNHT+QEY S
Sbjct: 1797 ICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQAALLIKLLFSNHTIQEYAS 1856
Query: 1887 NELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGS 1946
+ELIR+LTAALE++LWSTAT+NEEVLR L+V+F NFPKL +EAATLCIPHLVGALKSGS
Sbjct: 1857 SELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALKSGS 1916
Query: 1947 EAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLH 2006
EAAQ + LDTL LLR SWS MP +VA++QAM AAEAIP+LQMLMK+ PP FHERA+SLL
Sbjct: 1917 EAAQEAALDTLFLLRQSWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAESLLQ 1976
Query: 2007 CLPGCLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVI 2048
CLPG LTVTIKRGNNLKQ+MG TNAFC+LT+GNGPPRQTKV+
Sbjct: 1977 CLPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPPRQTKVV 2018
|
Length = 2102 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 39/115 (33%), Positives = 58/115 (50%)
Query: 468 EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527
EA+ + G+ L+SLL S E Q A ++ L+ +D+ A+ AGG+P LVQLL++
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMAL 582
++ + A L L ED + V AG VP + LL S Q + AL
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 6e-10
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 167 FVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLS 226
+ G +P L L+ D VQ AL NL + +A +EAGG+ +V LL
Sbjct: 3 VIQAGGLPALVSLLS---SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59
Query: 227 SDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEAL 286
S++ A L L D+ V+++G V LV L+ +N+ ++ +A AL L
Sbjct: 60 SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNE-DIQKNATGALSNL 118
Query: 287 SS 288
+S
Sbjct: 119 AS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 7e-09
Identities = 28/119 (23%), Positives = 56/119 (47%)
Query: 426 QWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485
+ V A L+ L++ + +V+ +L+ L +A+ + G+ L+ LL
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILC 544
E+ + A+ + L +D+K + AGG+P LV LL++ ++ ++ A L L
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-08
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 119 LKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWD 178
V+ G +P L+SLL S + ++ AA AL +S+G ++D++ + V G +P L
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG--NNDNI--QAVVEAGGLPALVQ 56
Query: 179 QLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAAS 238
L ++ + VV+ ALRNL + LEAGGV +V LL S N Q NA
Sbjct: 57 LLKSED--EEVVKA-ALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATG 113
Query: 239 LLARLM 244
L+ L
Sbjct: 114 ALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 37/156 (23%)
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
A+ AGG+P LV LL + + + AA L L + D V AG +PA + LLKS
Sbjct: 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
+ A+ AL L AA ++
Sbjct: 62 DEEVVKAALWALRNL--AAGPEDNKLIVLEAG---------------------------- 91
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666
G+ LV +L+SSNE+ Q+ A L++L S
Sbjct: 92 -------GVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 82 HAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKSESTD 140
A +P +S+L S + A LS L + ++ ++ G +P L+ LLKSE +
Sbjct: 5 QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64
Query: 141 TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200
KAA AL +++G + I + G VP L + L+ N+ +Q TGAL N
Sbjct: 65 VVKAALWALRNLAAGPEDNK----LIVLEAGGVPKLVNLLDSSNED---IQKNATGALSN 117
Query: 201 LC 202
L
Sbjct: 118 LA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 1386 IASECIQPLISLMQSDLSIVVESAVCAFERLLD-DEQQVELVEGYDVVDLLVRLVSGTNH 1444
I + + L+SL+ S V A A L + ++ V + LV+L+ +
Sbjct: 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDE 63
Query: 1445 RLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILT 1500
+V+A + AL L KL +++AG + ++LL + + L
Sbjct: 64 EVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 1344 IDGNLLESLYKILSSNSSLELKRNAA-ELCFIMFGNAKIIANPIASECIQPLISLMQSDL 1402
I L +L +LSS+ ++R AA L + GN I + + + L+ L++S+
Sbjct: 4 IQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSED 62
Query: 1403 SIVVESAVCAFERLL-DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCAL 1454
VV++A+ A L E +V V LV L+ +N + + AL
Sbjct: 63 EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMV 695
GL +LV +L+SS+E Q AA L++L + D ++ + ++LL S + V
Sbjct: 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65
Query: 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753
+ AL L+ NK+ + G V L+ L +S+ D + A AL+NL S
Sbjct: 66 VKAALWALRNLA---AGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 25/129 (19%)
Query: 254 VIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAP 313
VI +G + ALV L+ ++D +V+ AA AL LS+ + +AVV A G+P L+ + +
Sbjct: 3 VIQAGGLPALVSLL-SSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61
Query: 314 SKECMQGQRGQALQGHATRALANI-------------YGGMPALVVYLGELSQSPRLAAP 360
+E + A AL N+ GG+P LV L S + +
Sbjct: 62 DEE---------VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLD--SSNEDIQKN 110
Query: 361 VADIIGALA 369
+ LA
Sbjct: 111 ATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 0.002
Identities = 55/225 (24%), Positives = 87/225 (38%), Gaps = 22/225 (9%)
Query: 120 KVLLGGCIPPLLSLLKSESTDTRK-AAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWD 178
V+ G +P + + D + AA AL ++SG V V G VP
Sbjct: 109 PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKV----VVDAGAVPLFIQ 164
Query: 179 QLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQS---N 235
L+ V+ AL N+ GD +G L+ G ++ ++GLL S +A S N
Sbjct: 165 LLSSTEDD---VREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS-SAIHISMLRN 220
Query: 236 AASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKK 295
A L+ L S A+ L +L+ + D V A A+ LS + +
Sbjct: 221 ATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQ 279
Query: 296 AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGG 340
AV+ L+ + S + +Q A R++ NI G
Sbjct: 280 AVLDVGIPGRLVELLSHESAK---------IQTPALRSVGNIVTG 315
|
Length = 526 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.003
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 12/121 (9%)
Query: 225 LSSDNAAAQSNAASLLARLMLAFGDSIP--TVIDSGAVKALVQLVGQNNDISVRASAADA 282
L SD+ Q A R +L+ S P VID+G V V+ + + ++ AA A
Sbjct: 80 LFSDDIEQQLQAVYKF-RKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWA 138
Query: 283 LEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMP 342
L ++S + + K VV A VP+ I + + + + A AL NI G
Sbjct: 139 LTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVRE---------QAVWALGNIAGDSE 189
Query: 343 A 343
Sbjct: 190 G 190
|
Length = 526 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 2012 LTVTIKRGNNLKQTM--GTTNAFCRLTIGNGPPRQTKVI 2048
L VT+ NL G ++ + ++++G +TKV+
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVV 39
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2054 | |||
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.97 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.96 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.96 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 99.95 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 99.95 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 99.91 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.83 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.82 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.73 | |
| KOG1048 | 717 | consensus Neural adherens junction protein Plakoph | 99.69 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.58 | |
| KOG2122 | 2195 | consensus Beta-catenin-binding protein APC, contai | 99.55 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.49 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.48 | |
| PRK09687 | 280 | putative lyase; Provisional | 99.45 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.43 | |
| KOG4199 | 461 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.37 | |
| KOG4500 | 604 | consensus Rho/Rac GTPase guanine nucleotide exchan | 99.35 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.35 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.31 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.3 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.25 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.22 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.21 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 99.18 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 99.14 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.14 | |
| KOG1293 | 678 | consensus Proteins containing armadillo/beta-caten | 99.08 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.01 | |
| KOG1222 | 791 | consensus Kinesin associated protein KAP [Intracel | 98.98 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 98.91 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 98.9 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 98.88 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.86 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 98.84 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.84 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 98.81 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 98.8 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 98.73 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.72 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 98.68 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 98.62 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.61 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 98.61 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 98.6 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.55 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.49 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.45 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.45 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.42 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 98.41 | |
| KOG1789 | 2235 | consensus Endocytosis protein RME-8, contains DnaJ | 98.4 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 98.39 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 98.36 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 98.33 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 98.31 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.23 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.18 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.07 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 98.02 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 98.0 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.9 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 97.89 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 97.89 | |
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 97.87 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.81 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 97.8 | |
| PF05536 | 543 | Neurochondrin: Neurochondrin | 97.78 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.7 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.7 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 97.7 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 97.68 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 97.68 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.63 | |
| KOG2759 | 442 | consensus Vacuolar H+-ATPase V1 sector, subunit H | 97.6 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 97.57 | |
| KOG3678 | 832 | consensus SARM protein (with sterile alpha and arm | 97.56 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 97.5 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 97.49 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.49 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 97.43 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 97.4 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.33 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.33 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.27 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 97.26 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.23 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.15 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 97.13 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 97.12 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 97.12 | |
| KOG4646 | 173 | consensus Uncharacterized conserved protein, conta | 97.06 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 96.99 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 96.94 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 96.91 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.91 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.89 | |
| KOG4413 | 524 | consensus 26S proteasome regulatory complex, subun | 96.86 | |
| KOG0567 | 289 | consensus HEAT repeat-containing protein [General | 96.85 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 96.82 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.72 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 96.66 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 96.61 | |
| KOG2973 | 353 | consensus Uncharacterized conserved protein [Funct | 96.6 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 96.4 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.38 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 96.35 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 96.33 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 96.25 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 96.22 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 96.21 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 96.07 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 95.81 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 95.77 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 95.74 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 95.68 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 95.55 | |
| KOG2734 | 536 | consensus Uncharacterized conserved protein [Funct | 95.44 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 95.4 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.4 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 95.3 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 95.16 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 95.15 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 95.04 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 94.91 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 94.84 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 94.69 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.53 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 94.49 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.42 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 94.4 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 94.39 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 94.3 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 94.03 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 93.92 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 93.9 | |
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 93.84 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 93.63 | |
| KOG4151 | 748 | consensus Myosin assembly protein/sexual cycle pro | 93.27 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 93.23 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 92.78 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 92.54 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 92.49 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 92.34 | |
| KOG3036 | 293 | consensus Protein involved in cell differentiation | 92.1 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 91.85 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 91.74 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 91.42 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 90.58 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 90.47 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 89.25 | |
| KOG2611 | 698 | consensus Neurochondrin/leucine-rich protein (Neur | 89.19 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 89.0 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 88.64 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 88.58 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 88.43 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 88.13 | |
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 88.12 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 87.67 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 87.56 | |
| KOG1788 | 2799 | consensus Uncharacterized conserved protein [Funct | 87.26 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 87.25 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 87.02 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 86.87 | |
| KOG2274 | 1005 | consensus Predicted importin 9 [Intracellular traf | 86.79 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 86.7 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 86.49 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 86.46 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 85.51 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 85.36 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 85.02 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 84.93 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 84.84 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 84.84 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 84.07 | |
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 84.04 | |
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 83.85 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 83.68 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 83.3 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 83.13 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 82.85 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 82.71 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 82.68 | |
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 82.16 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 81.88 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 81.79 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 81.59 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 81.51 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 81.28 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 80.54 |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=4198.14 Aligned_cols=2019 Identities=70% Similarity=1.046 Sum_probs=1955.8
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHH
Q 000145 28 TSAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAAT 107 (2054)
Q Consensus 28 ~~~med~~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~v 107 (2054)
...||||+++...+..++++|+..++++++++.++..|+.+++.++++|..|.++.|+||.|+.+|+++++.+|.+++.+
T Consensus 2 ~~~~~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaa 81 (2102)
T PLN03200 2 TSEMDDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAV 81 (2102)
T ss_pred CccccCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 34599999999999999999999877889999999999999999999999999889999999999999999999999999
Q ss_pred HHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCC
Q 000145 108 LSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQD 187 (2054)
Q Consensus 108 L~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d 187 (2054)
|.+++.+++++.++...|+||+|+++|++.+++.|+.|+.+|.+|+.++.+ ++..+..++..|+||.|+++++++++.+
T Consensus 82 L~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~-D~~~~~I~v~~GaVp~Lv~lL~~gsk~d 160 (2102)
T PLN03200 82 LGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLS-DHVGSKIFSTEGVVPSLWDQLQPGNKQD 160 (2102)
T ss_pred HHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcch-hhhhhhhhhhcCChHHHHHHHhCCchhh
Confidence 999999999999999999999999999999999999999999999985321 3333466778999999999999877666
Q ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHh
Q 000145 188 NVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLV 267 (2054)
Q Consensus 188 ~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL 267 (2054)
..+++.++.+|.|||.++++++..+.+.|+++.++.+|.++++..+..|+.+|.+++..+++.+..+.+.|+++.|++++
T Consensus 161 ~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL 240 (2102)
T PLN03200 161 KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLL 240 (2102)
T ss_pred HHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHH
Confidence 66788999999999999999999999999999999999999999999999999999977777888899999999999999
Q ss_pred ccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHH
Q 000145 268 GQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVY 347 (2054)
Q Consensus 268 ~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~ 347 (2054)
+++.+..+|+.|+++|.+++.++++.|+.+.+.||++.|++++..++++++++.+.+.+|++++++|+|++|+.++++..
T Consensus 241 ~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~ 320 (2102)
T PLN03200 241 GQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILY 320 (2102)
T ss_pred ccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHH
Confidence 86667789999999999999998999999999999999999999999999888777889999999999999999999999
Q ss_pred hhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHH
Q 000145 348 LGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQW 427 (2054)
Q Consensus 348 L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~ 427 (2054)
|.+.+.+++....+++.+|.++|..+.++ ++......+++..+++.|+.++++.++..+++.+..+|..+++|+.+++.
T Consensus 321 L~~ll~s~rd~~~~ada~gALayll~l~d-~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~ 399 (2102)
T PLN03200 321 LGELSESPRSPAPIADTLGALAYALMVFD-SSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRK 399 (2102)
T ss_pred HHHhhcccchHHHHHHHHhhHHHHHHhcC-CchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHH
Confidence 99999998888999999999999988877 33333446677788899999999998876789999999999999999999
Q ss_pred HhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc
Q 000145 428 VSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD 507 (2054)
Q Consensus 428 L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e 507 (2054)
+.+.+++++|+.|+...+.+.|..++.+|.+++.++.+.+..|.+.|++|.|+++|++++..+|+.+++.|+|++..+++
T Consensus 400 L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~nde 479 (2102)
T PLN03200 400 LNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDE 479 (2102)
T ss_pred HHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999987788
Q ss_pred hhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000145 508 SKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 508 ~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~ 587 (2054)
++..+.+.|++|+|+++|.+++.++|+.|+|+|+|++.++++++..+.+.|++++|+++|+++++++|..++++|.++..
T Consensus 480 nr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~ 559 (2102)
T PLN03200 480 SKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR 559 (2102)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999888899999899999999999999999999999999999999
Q ss_pred hhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhc
Q 000145 588 AADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2054)
Q Consensus 588 ~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~ 667 (2054)
..+...+++++.++..+++.++..+.++++++....+..+..+.+....|+++.|+.+++++++++++.|+++|.+++.+
T Consensus 560 ~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~ 639 (2102)
T PLN03200 560 TADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS 639 (2102)
T ss_pred ccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 88888999999999999999999999999999887777777766666789999999999999999999999999999999
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHH
Q 000145 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAA 747 (2054)
Q Consensus 668 ~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~A 747 (2054)
+++++..++..|++++++.+|++++..+++.|+++|.+++.+..+ +++..+++.|+++||+++|++.+.++++.|+.+
T Consensus 640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~--~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~A 717 (2102)
T PLN03200 640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKE--NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCA 717 (2102)
T ss_pred ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH--HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999985555 778888999999999999999999999999999
Q ss_pred HHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCch
Q 000145 748 LANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGT 827 (2054)
Q Consensus 748 L~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~ 827 (2054)
|.|++.+++.+.++...|++++|+++|+++++++|++|+++|.+|+...+.++.+.+.+.++|.+.+|+++|++.+.+..
T Consensus 718 LanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~ 797 (2102)
T PLN03200 718 LANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSS 797 (2102)
T ss_pred HHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchh
Confidence 99999999999999999999999999999999999999999999999999888888999999999999999998888887
Q ss_pred hHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccH
Q 000145 828 DVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSI 907 (2054)
Q Consensus 828 ~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i 907 (2054)
...+|+++|+++++.+.+..+.+|+|....+.|..+++|++|+.+++|.+|++|+++|+++|+++|.++|+++...++||
T Consensus 798 ~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~ 877 (2102)
T PLN03200 798 ATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCI 877 (2102)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchH
Confidence 88899999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCceeehhhhHHHHHhcccchhhhHHHHhhcCCcHHHHHHHHHHhhhccCCCCCCcccccCCCccccccc
Q 000145 908 GALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAF 987 (2054)
Q Consensus 908 ~~La~~il~s~~~ev~~~~~~~~i~~~k~~~~~~~~~L~~~g~~~~~i~~Lv~l~~~~~~~~~~d~~~~~~~~~~~~~~~ 987 (2054)
++||+|+++++++|||+|||..+|||+|+|++++|+.|+++||.+.+|++||+|+++++...+.|+++.+++|..++..+
T Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (2102)
T PLN03200 878 SSLADRIINSSSLEVKIGGTALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLF 957 (2102)
T ss_pred HHHHHHHhhcCCceEEecchhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcCCCCCcchhhHHHHHHHHHhccCCCCcchhhhccchHHHHHHhhccCCCCcccccccchhHHHHHHHHHHcc
Q 000145 988 QEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQ 1067 (2054)
Q Consensus 988 ~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~~~~~~~~~~~~ll~~lf~ 1067 (2054)
..-.+|..|+|++|+|+|+|+|||++||+||++||++||||||+|+|||||++|.+.||+++||++++||+++||+||||
T Consensus 958 ~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~ 1037 (2102)
T PLN03200 958 ADGDDFEVPDPATILGGTVALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQAEFEDSESIWISALLLAILFQ 1037 (2102)
T ss_pred ccCCcccCCCCCccCcchHHHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999944599999999999999999999999
Q ss_pred CcccccchhhhccHHHHHHHhcccchhhhHHHHHHHHHhhccCCccchhhhhccccchhhhhhhcccccCCchhhhhhhh
Q 000145 1068 DANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEE 1147 (2054)
Q Consensus 1068 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1147 (2054)
||||+|||+||++||+|+.+|||++.+|||||||+||||||||||||.|+|||||||+|+|+|+||+|+||++|++|+||
T Consensus 1038 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e 1117 (2102)
T PLN03200 1038 DRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEE 1117 (2102)
T ss_pred ChhhhcCHhHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCcHHHHHhhhcccccccchhhhhhhhhHHHhccCCCCCCCChhHHHHHHHHhhcCCCcchhHHHhcchhhHHHH
Q 000145 1148 FFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTK 1227 (2054)
Q Consensus 1148 ~~~~~~~~~~~l~~lf~~~~ir~~~~a~~~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~e~~~~~~l~k 1227 (2054)
|+|++||||++||+||++||||+|+||||+||+|||||||++|||+.|+.||+.|.+|++||+.|+..|+|+|++|+|+|
T Consensus 1118 ~~l~~~~~~~~le~lf~~~~ir~~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~k 1197 (2102)
T PLN03200 1118 FSLVRNPDQVALERLFRVEDIRVGATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTK 1197 (2102)
T ss_pred hhccccHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccHHHHHHHHHHhhcCcccccchhhhhhHHHHHHHHHcCCCchhhhHHHHHhhhcccccccchHhhhccchh
Q 000145 1228 YLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPP 1307 (2054)
Q Consensus 1228 ~ls~~~~~~~~~~~~~l~~~lf~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~a~~~~~~ 1307 (2054)
|||++++++.+.++.|+|+|||.|+++|++.++.+|++|||+|||.|++.+||+|+++|++||++|++|+++.|||||+|
T Consensus 1198 vLSl~~s~s~e~a~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~p 1277 (2102)
T PLN03200 1198 YLSLGPQDSTEEAASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQP 1277 (2102)
T ss_pred HHHhcCccchhHHHHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccchhHHHHHHHHHHHhhccCCCccccchhhcccchHHHHHHHhccCCcHHHHHHHHHHHHHHhcCcccccCccc
Q 000145 1308 LVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIA 1387 (2054)
Q Consensus 1308 l~~~~~~~~~~~~~~~~~al~kl~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~a~l~~~l~~~~~i~~~~~a 1387 (2054)
||+||++|+++++++++.|||||+.|+.++...+.|||||+|+.|||||++++|++||+++++||++||+|+++|+++.+
T Consensus 1278 Lv~ll~~~~~~~~~~a~~ALvkL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~ 1357 (2102)
T PLN03200 1278 LVEMLNTGSESEQHAAIGALIKLSSGNPSKALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAA 1357 (2102)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHcCCCChHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHH
Confidence 99999999999999999999999888888888888899999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhcCChhHHHHHHHHHHHhhhhhhhhhHhhhhcchhhhhHhhhcccchhHHHHHHHHHHHhhcCCCchhHH
Q 000145 1388 SECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQ 1467 (2054)
Q Consensus 1388 ~~~~~pli~l~~s~~~~~~~~~~~~~~~ll~~e~~~~~~~~~~~v~~lv~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 1467 (2054)
+.||+|||.||.+++++++|.++++|+||+++|++++.+++|++++|+|..+++++|.++|.||+||.|++++||+||.|
T Consensus 1358 agaV~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~~ilrvS~~a~E~AV~aL~kl~~~~~~v~~E 1437 (2102)
T PLN03200 1358 ARCIEPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKLGKDRPPCKLD 1437 (2102)
T ss_pred hCCHHHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHHHHHcCCHHHHHHHHHHHHHHhCCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhHhhhhCCCCchHHHHHHHHHHHhhhccchhcccccchhccchhhhhhhCCCCCchhHHHHHHHHHHhhcCCc
Q 000145 1468 MVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQ 1547 (2054)
Q Consensus 1468 ~~~~g~i~~~~~~~~~~p~~l~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~al~~l~~~~e~~~ 1547 (2054)
|+++|+|+.++.+|+.+|+++|+.++|+||||+||+.|+||++|+|+|+|+|++++|++++.||||||||||||||||||
T Consensus 1438 mv~~G~~~kllllLQ~c~~~lkekAaeLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~ 1517 (2102)
T PLN03200 1438 MVKAGIIERVLDILPEAPDSLCSAIAELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQ 1517 (2102)
T ss_pred HHHhCHHHHHHHHHHcCCHHHHHHHHHHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccchHHHHHhhcCChhHHHHHHHHHHHHHhcccccccchhhhhhhhhhHHHhhcchhhHHHHHHHHHHHHh
Q 000145 1548 SLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKIS 1627 (2054)
Q Consensus 1548 ~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~ 1627 (2054)
|+++++|+|+|+|+|||+|||||+++|||+|||+|+||++++|||+|++||+||+||||++|+|++++||+|+||||+++
T Consensus 1518 ~~~~~~~~~~~~i~~Li~lL~s~~~~vqe~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~ 1597 (2102)
T PLN03200 1518 CLASLTLTPSQAIEPLIPLLESPSQAVQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESIS 1597 (2102)
T ss_pred hhhhhhcCccchHHHHHHHHcCCcHHHHHHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHhhcCCceeeehhhhccCCCCChhhHHhHHHHHhhhhccCccceeechHHHHHHHhhhhchhHHHHHhhhHHhh
Q 000145 1628 TSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIH 1707 (2054)
Q Consensus 1628 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1707 (2054)
++|||+|+|+|||+||+|||+|+||||||+|||||++||+|++||+++|||+||++|||||+||+.|+|+++|+++|+++
T Consensus 1598 ~~w~~~v~~~ggv~~l~~~~~~~d~~~~~~l~~~a~~vl~n~~~~~~~~~~~v~~~~lvkl~~s~~e~~~~~a~~~l~~~ 1677 (2102)
T PLN03200 1598 LSWPKAVADAGGIFELSKVILQADPQPPHALWESAASVLSNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALLVL 1677 (2102)
T ss_pred cccHHHHHHccCHHHHHHHHHccCCCCchhhHHHHHHHHHHHhccCceeEEEeeHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCcHHHHHHhhhHHHHHHHHhhcccchhHHhHHHHHhcccccccccchhhhhccccccccCccccchhhhHHHHHh
Q 000145 1708 ERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALA 1787 (2054)
Q Consensus 1708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1787 (2054)
|++|+|++|+|+|+||||+|+++||||||||+||||||+||||+||||||+|||+|+||||||||||||+|++|+|||||
T Consensus 1678 ~~~d~~~~~~~~~~g~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1757 (2102)
T PLN03200 1678 ERDDSSSAEQMAESGAIEALLELLRSHQCEEAAARLLEALFNNVKVREMKATKYAIAPLSQYLLDPQTRSQQARLLAALA 1757 (2102)
T ss_pred HhcchhHHHHHHHhhhHHHHHHHHHhccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHHHHhcCcccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCccccchhhhccChhHHHHHHHHhhhcCcchhhHHHHHHHhhhhhhhccchhhHHHhhcChHHHHHHhhcCChhhHhH
Q 000145 1788 LGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQ 1867 (2054)
Q Consensus 1788 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1867 (2054)
||||||||||||+||+|||||||||+||||||||||||||||||||||||||||||||||||||||||||+|||||||+|
T Consensus 1758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1837 (2102)
T PLN03200 1758 LGDLFQHEGLARSTDAVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQ 1837 (2102)
T ss_pred hccchhhhhhhhccCcHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcchhhHHHhHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhhcCCcccccccchhhhhHHHhhhccchh
Q 000145 1868 AALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSE 1947 (2054)
Q Consensus 1868 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1947 (2054)
||||||+||||||||||||||+||+|||+||||||+|+|||+||+||||+||+||||||+||+||+||||||+|||+|+|
T Consensus 1838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1917 (2102)
T PLN03200 1838 AALLIKLLFSNHTIQEYASSELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALKSGSE 1917 (2102)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcCccccccchHHhhHHHHHHHhccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhHHHHHHhhhcCCCcHHHHhHHHHHHhhhhhHHHHHHHhCCCchhhhhhhhhhcCCCceEEEEEcCCcchhhcC
Q 000145 1948 AAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCLPGCLTVTIKRGNNLKQTMG 2027 (2054)
Q Consensus 1948 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2027 (2054)
||||++|||||||||+|++||+||+|||+|+||||||+|||||||||||||||||+|+|||||+|+|+||||+||+++||
T Consensus 1918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~V~V~~a~nl~~~~~ 1997 (2102)
T PLN03200 1918 AAQEAALDTLFLLRQSWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAESLLQCLPGSLTVTIKRGNNLKQSMG 1997 (2102)
T ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHhhhhHHHHHHHHhCCccHHHHHHHHHhhCCcceEEEEeeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceEeeccCCCCcccceeee
Q 000145 2028 TTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2028 ~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
++|.||++++||||+|+||||++
T Consensus 1998 ~sdPyv~l~~g~~~~~kTkvvk~ 2020 (2102)
T PLN03200 1998 NTNAFCKLTLGNGPPRQTKVVSH 2020 (2102)
T ss_pred CCCCeEEEEECCCCcccccccCC
Confidence 99999999999999999999986
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-166 Score=1681.18 Aligned_cols=1591 Identities=24% Similarity=0.293 Sum_probs=1364.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCc---hh
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDE---DL 117 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~e---e~ 117 (2054)
|..++..|+. .+...|+.++..|.+++.+ ++++..|.. .|+||.|+.+|++++++.|.+|+++|.+|+.+. .+
T Consensus 60 IP~LV~lL~s--g~~~vk~nAaaaL~nLS~~-e~nk~~Iv~-~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~ 135 (2102)
T PLN03200 60 MPLLVSLLRS--GTLGAKVNAAAVLGVLCKE-EDLRVKVLL-GGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHV 135 (2102)
T ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHHHhcC-HHHHHHHHH-cCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhh
Confidence 5556666654 4567789999999999988 577777777 899999999999999999999999999998763 34
Q ss_pred H-HHHHhcCChHHHHHhhccC---CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHH
Q 000145 118 R-LKVLLGGCIPPLLSLLKSE---STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGF 193 (2054)
Q Consensus 118 r-~~v~~~GaIp~LV~LL~se---d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~ 193 (2054)
+ ..+...|+||.|+.++.+. |.-+++.++.+|.+|+.+. ....+.+++.|+||.|+++|.+++ +.++..
T Consensus 136 ~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~----en~~~~IIeaGaVp~LV~LLsS~d---~~lQ~e 208 (2102)
T PLN03200 136 GSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGST----DGFWSATLEAGGVDILVKLLSSGN---SDAQAN 208 (2102)
T ss_pred hhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCc----cchHHHHHHcCCHHHHHHHHcCCC---HHHHHH
Confidence 4 3355789999999999884 4456788899999999742 222357789999999999998654 568999
Q ss_pred HHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC-CHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCC-
Q 000145 194 VTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD-NAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN- 271 (2054)
Q Consensus 194 Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~-s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~- 271 (2054)
|+.+|.+++.+.+.....+.+.|+++.|+++|.++ ++.+++.|+++|.+|+..+++.+..+.+.|+++.|+.++..+.
T Consensus 209 Aa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~ 288 (2102)
T PLN03200 209 AASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSK 288 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcch
Confidence 99999999988665668889999999999999864 5689999999999999888889999999999999999997322
Q ss_pred -------ChhHHHHHHHHHHHHhhccHH-----------HH--HHH-HhcCCHHHHHHhhcCCchhhhhhhhhhhhh-hH
Q 000145 272 -------DISVRASAADALEALSSKSIK-----------AK--KAV-VAADGVPVLIGAIVAPSKECMQGQRGQALQ-GH 329 (2054)
Q Consensus 272 -------d~~Vr~~Aa~aL~nLs~~s~e-----------~R--k~I-~eaggL~~LIeLL~s~s~e~~q~~~~~~lq-e~ 329 (2054)
+...++.+.++|.|++.+... .| ..+ ...|+++.++..+..+... .+ . +. .+
T Consensus 289 e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~-~~-~----i~~~~ 362 (2102)
T PLN03200 289 EFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAES-TR-A----FDPTV 362 (2102)
T ss_pred hhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhh-hh-h----ccccc
Confidence 234689999999999885221 11 011 1135555555544432211 00 0 00 12
Q ss_pred HHHHHHHHhcCchhHHHHhhhhcCCCCch---hhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhh
Q 000145 330 ATRALANIYGGMPALVVYLGELSQSPRLA---APVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKL 406 (2054)
Q Consensus 330 Al~ALanLsGgis~lI~~L~elL~s~~~~---~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~ 406 (2054)
+.+.|.+ ++++++.. +.+..+|..+. .+...+..+.+.+.+++|+.|+...+.+
T Consensus 363 v~~~LV~--------------Llr~k~p~~vqe~V~eALasl~--------gN~~l~~~L~~~daik~LV~LL~~~~~e- 419 (2102)
T PLN03200 363 IEQILVK--------------LLKPRDTKLVQERIIEALASLY--------GNAYLSRKLNHAEAKKVLVGLITMATAD- 419 (2102)
T ss_pred cHHHHHH--------------HhCCCCCchhHHHHHHHHHHhc--------CChHHHHHHHhccchhhhhhhhccCCHH-
Confidence 2333333 44444332 22233332211 1222234455667889999999998775
Q ss_pred HHHHHHHHHHHhhcC-hhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcC
Q 000145 407 VQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n-~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s 485 (2054)
+|..++.+|..++.+ .+.++.+...++++.|+.+|.+++.+.|+.++..+++++..+++++..|++.|+||+|+++|++
T Consensus 420 vQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s 499 (2102)
T PLN03200 420 VQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET 499 (2102)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 999999999999854 6888899999999999999999999999999999999998878899999999999999999999
Q ss_pred CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChh----------------
Q 000145 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED---------------- 549 (2054)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~---------------- 549 (2054)
++..+|++|+|+|.|++.++++.+..+.+.|++++|+++|++++.++|+.|+++|.+|..+.+.
T Consensus 500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~ 579 (2102)
T PLN03200 500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPE 579 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChh
Confidence 9999999999999999986566777777899999999999999999999999999999643211
Q ss_pred ---------------------HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHH
Q 000145 550 ---------------------IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLAL 600 (2054)
Q Consensus 550 ---------------------~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~L 600 (2054)
.+......|+++.|+++++++++++++.|+|+|.+++... +.+++++++.+
T Consensus 580 ~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~L 659 (2102)
T PLN03200 580 SKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKL 659 (2102)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHH
Confidence 0111224689999999999999999999999999998753 35789999999
Q ss_pred hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCC
Q 000145 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEI 680 (2054)
Q Consensus 601 L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~ 680 (2054)
|+.++.+++..++++|++++..... ..+..+.+.|++++|++++++++.++++.|+.+|.|++. +++.+.++.+.|+
T Consensus 660 Lss~~~~v~keAA~AL~nL~~~~~~--~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~-~~e~~~ei~~~~~ 736 (2102)
T PLN03200 660 LTNNTEAVATQSARALAALSRSIKE--NRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS-DPEVAAEALAEDI 736 (2102)
T ss_pred HhcCChHHHHHHHHHHHHHHhCCCH--HHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc-CchHHHHHHhcCc
Confidence 9999999999999999999864332 223345789999999999999999999999999999998 7888999999999
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHH--HHHHHHHhhC-----
Q 000145 681 VNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET--AVAALANLLS----- 753 (2054)
Q Consensus 681 V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~--Al~AL~NLa~----- 753 (2054)
+++|+++|++|++.+|++|+++|.+|+.+++.++.....+.+.|++.+|+++|+..|.+.... |+.+|.+|+.
T Consensus 737 I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~ 816 (2102)
T PLN03200 737 ILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGA 816 (2102)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccC
Confidence 999999999999999999999999999977765557778899999999999999988777664 9999999965
Q ss_pred ---ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCC--chhHhhhhhh-hhhHHHHHHhh--------
Q 000145 754 ---DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--GDVLKGNAQC-RFVVLTLVDSL-------- 819 (2054)
Q Consensus 754 ---~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~--~e~i~~~i~~-~g~v~~LV~LL-------- 819 (2054)
+|.+...+..++++.+||+++.+++|.++++|+++|.+||.++|. ++.+...-.| .....+.++..
T Consensus 817 ~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 896 (2102)
T PLN03200 817 NFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANASKCISSLADRIINSSSLEVKIGG 896 (2102)
T ss_pred CCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcccchHHHHHHHHhhcCCceEEecc
Confidence 356777888999999999999999999999999999999999986 5555555445 44445555433
Q ss_pred -----ccCCCCchhHHHHHHHHHHHhh----------cc-------------------------cCCCccCCcccccccC
Q 000145 820 -----NAMDMNGTDVADALEVVALLAR----------TK-------------------------QGLNFTYPPWAALAEV 859 (2054)
Q Consensus 820 -----~sg~~~~~~~~~AL~ALa~La~----------~~-------------------------~~~~~i~~~~~~~~~~ 859 (2054)
+..+++.+...++++..+++.. .+ +.+....|....+...
T Consensus 897 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 976 (2102)
T PLN03200 897 TALLICAAKEHRQLVMEALDESGYLKLLIQALVDMLKQNSKKESLSIEIQTPRGFLESNLFADGDDFEVPDPATILGGTV 976 (2102)
T ss_pred hhhhhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHhccCcccccceeecCCccchhhhhhccCCcccCCCCCccCcchH
Confidence 2566777778888887666541 00 1112223556666778
Q ss_pred CCchHHHHHhhhcCChh--HHHHHHHHHHHhhccCCc-hhhhhhhcccccHHHHHHHHhcccCceeehhhhHHHH-----
Q 000145 860 PSSIEPLVCCLAEGPPP--LQDKAIEILSRLCGDQPA-VLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI----- 931 (2054)
Q Consensus 860 ~~~L~~Lv~ll~~~~~~--vq~~Ai~iL~~L~~~~~~-~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i----- 931 (2054)
+.|+..+++..+++++. ++.+|+++|.+.+..+.+ +|++|+++++.||++|+++|+||+.+.+|.++||+.|
T Consensus 977 a~~ll~~~~~~~~~~k~~~~e~~~~~~~~~~~~~~~~~~q~~~~d~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~~~~ 1056 (2102)
T PLN03200 977 ALWLLSVIASHDAKSKLAIMEAGGIEVLTEKLASYTSNRQAEFEDSESIWISALLLAILFQDRDVVRAPATMRAIPSLAN 1056 (2102)
T ss_pred HHHHHHHHHcCCccchhhhhhcccHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHcCChhhhcCHhHHHHhHHHHh
Confidence 89999999999999988 699999999998888866 9999999999999999999999999999999999999
Q ss_pred ------HhcccchhhhHHHH----------------------hhcCCcHHHHHHHHHHhhhccCCCCCC-----------
Q 000145 932 ------CAAKEHKKQSMDAL----------------------DLSGYLKPLIYALVDMMKQNSSCSSLD----------- 972 (2054)
Q Consensus 932 ------~~~k~~~~~~~~~L----------------------~~~g~~~~~i~~Lv~l~~~~~~~~~~d----------- 972 (2054)
.+||||++|+|+|| +++||+++|+++|++|++||+++++||
T Consensus 1057 ~~~~~~~~~~~~~~q~~a~~~~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~e~~l~~~~~~~~le~lf~~~ 1136 (2102)
T PLN03200 1057 LLKSEETIDRYFAAQALASLVCNGSRGTLLAVANSGAVGGLISLLGCAESDISNLVALSEEFSLVRNPDQVALERLFRVE 1136 (2102)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHcCCcchhhhhhcccccchhhhhhhhhhhhHHHHHHHHHHhhccccHHHHHHHHHhhhh
Confidence 78999999999988 899999999999999999999999999
Q ss_pred -cccccCCCccccccccccCCCCcCCCCCcchhhHHHHHHHHHhccCCCCcchhhhccchHHHHHHhhccCCCCcccccc
Q 000145 973 -IEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFED 1051 (2054)
Q Consensus 973 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~~~ 1051 (2054)
||+ |+|+|+.||.++|+++|.|+|++.++.||..|..|+.+++.||..|.|+||+|+|++++ ++.++++.++
T Consensus 1137 ~ir~----~~~a~~~Ip~Lv~lL~~~~~r~~~~~~AL~kLr~LA~EserNR~~maeaGAle~L~kvL---Sl~~s~s~e~ 1209 (2102)
T PLN03200 1137 DIRV----GATARKAIPLLVDLLKPIPDRPGAPPLALGLLTQLAEGSDVNKLAMAEAGALDALTKYL---SLGPQDSTEE 1209 (2102)
T ss_pred hhcc----hHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHH---HhcCccchhH
Confidence 666 99999999999999999999999999999999999999999999999999999999999 5556777777
Q ss_pred cchhHHHHHHHHHHccCcccccchhhhccHHHHHHHhcccchhhhHHHHHHHHHhhccCCccchhhhhccccchhhhhhh
Q 000145 1052 TEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLI 1131 (2054)
Q Consensus 1052 ~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1131 (2054)
+ +.++|+|||.|++.+++..+.+++++|+.+||+|++..||.||++
T Consensus 1210 a-----~~ElL~IL~~~~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~a----------------------------- 1255 (2102)
T PLN03200 1210 A-----ASELLRILFSSPELRRHESAFGAVNQLVAVLRLGSRSARYSAARA----------------------------- 1255 (2102)
T ss_pred H-----HHHHHHHHhCCHHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHH-----------------------------
Confidence 7 999999999999999999999999999999999999999999999
Q ss_pred cccccCCchhhhhhhhhhcccCCcHHHHHhhhcccccccchhhhhhhhhHHHhccCCCCCCCChhHHHHHHHHhhcCCCc
Q 000145 1132 GHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDT 1211 (2054)
Q Consensus 1132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lf~~~~ir~~~~a~~~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~ 1211 (2054)
|++||+.|++|....|++||||||+||..+.++.+. .++.+|++|..|+++
T Consensus 1256 ---------------------------L~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~--~a~~ALvkL~kd~is 1306 (2102)
T PLN03200 1256 ---------------------------LQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQH--AAIGALIKLSSGNPS 1306 (2102)
T ss_pred ---------------------------HHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhH--HHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999998 999999999999999
Q ss_pred chhHH--HhcchhhHHHHhhcCCCCcccHHHHHHHHHHhhcCcccccchhhhhhHHHHHHHHHcCCCchhhhHHHHHhhh
Q 000145 1212 NKLIM--AEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL 1289 (2054)
Q Consensus 1212 ~~~~~--~e~~~~~~l~k~ls~~~~~~~~~~~~~l~~~lf~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l 1289 (2054)
++..| +|+|+|+.++||||.+|++++|+++++||++||+|+++|..+.+.|||.+||.+|..+++.+.+.|.++|++|
T Consensus 1307 ~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV~~LIeLL~de~~~~~E~Al~vLd~L 1386 (2102)
T PLN03200 1307 KALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL 1386 (2102)
T ss_pred hHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCHHHHHHHHhccCchHHHHHHHHHHHH
Confidence 99999 7999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred cccccccchHhhhccchhHHHhhccchhHHHHHHHHHHHhhccCCCccccchhhcccchHHHHHHHhccCCcHHHHHHHH
Q 000145 1290 FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAA 1369 (2054)
Q Consensus 1290 ~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~al~kl~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~a 1369 (2054)
++.|+.|+..++|+++.|+|.++.++++..+|.|++||+|+ +++++.++.+||++|+++.+|.+|+. ||.++|+.++
T Consensus 1387 c~~eegre~~~~h~a~vplV~~ilrvS~~a~E~AV~aL~kl--~~~~~~v~~Emv~~G~~~kllllLQ~-c~~~lkekAa 1463 (2102)
T PLN03200 1387 LDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKL--GKDRPPCKLDMVKAGIIERVLDILPE-APDSLCSAIA 1463 (2102)
T ss_pred hcCHhhHHHHHHcCChhhHHHHHHcCCHHHHHHHHHHHHHH--hCCChHHHHHHHHhCHHHHHHHHHHc-CCHHHHHHHH
Confidence 99999999999999999999999999999999999999999 79999999999999999999999999 9999999999
Q ss_pred HHHHHHhcCcccccCccc---------------------------------------------cchhhhhhhhhcCChhH
Q 000145 1370 ELCFIMFGNAKIIANPIA---------------------------------------------SECIQPLISLMQSDLSI 1404 (2054)
Q Consensus 1370 ~l~~~l~~~~~i~~~~~a---------------------------------------------~~~~~pli~l~~s~~~~ 1404 (2054)
||||+|+||+.|+++|+| ++.|+|||+||+|+++.
T Consensus 1464 eLLrlL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~i~~Li~lL~s~~~~ 1543 (2102)
T PLN03200 1464 ELLRILTNNSSIAKGQSAAKVVEPLFLLLTRPDLGTWGQHSALQALVNILEKPQCLASLTLTPSQAIEPLIPLLESPSQA 1543 (2102)
T ss_pred HHHHHhccchhhccccchhhhhHHHHHHHhccCcceecHHHHHHHHHHHHhCcchhhhhhcCccchHHHHHHHHcCCcHH
Confidence 999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhhHhhhhcchhhhhHhhhcccchhHHHHHHHHHHHhhcCCCchhHHHhhhhhhhHhhhhC---
Q 000145 1405 VVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLL--- 1481 (2054)
Q Consensus 1405 ~~~~~~~~~~~ll~~e~~~~~~~~~~~v~~lv~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~g~i~~~~~~~--- 1481 (2054)
+||.++++|+||+..|+||+++.+++||.|||+++++|+.++||+|++||++++..||| +++++|||++++|++
T Consensus 1544 vqe~aa~ll~~l~~~~~~~~~~~~~~aI~pLv~~l~~~~~~~~~~A~~aL~~~~~~w~~---~v~~~ggv~~l~~~~~~~ 1620 (2102)
T PLN03200 1544 VQQLAAELLSHLLAEEHFQQDITTQNAVVPLVRLAGIGILSLQQRAVKALESISLSWPK---AVADAGGIFELSKVILQA 1620 (2102)
T ss_pred HHHHHHHHHHHHhcchHHhhhhhcccchHHHHHHhcCCChhHHHHHHHHHHHhhcccHH---HHHHccCHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred -CCCchHHHHHHHHHHHhhhccchhcccccchhccchhhhhhhCCCCCchhHHHHHHHHHHhhcCCccccccccCcccch
Q 000145 1482 -PVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVI 1560 (2054)
Q Consensus 1482 -~~~p~~l~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~al~~l~~~~e~~~~~~~~~~~~~~~i 1560 (2054)
|++|+.||+++|.|| +|+++++++|||+|++.++|+|.+++.|++|.+|+++|. ++|+.|+++++.|+++|+|
T Consensus 1621 d~~~~~~l~~~a~~vl-----~n~~~~~~~~~~~v~~~~lvkl~~s~~e~~~~~a~~~l~-~~~~~d~~~~~~~~~~g~i 1694 (2102)
T PLN03200 1621 DPQPPHALWESAASVL-----SNILRFSSEYYFEVPVAVLVKLLRSTSESTVVVALNALL-VLERDDSSSAEQMAESGAI 1694 (2102)
T ss_pred CCCCchhhHHHHHHHH-----HHHhccCceeEEEeeHHHHHHHHhccchhHHHHHHHHHH-HHHhcchhHHHHHHHhhhH
Confidence 999999999999999 999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHhcccccccchhhhhhhhhhHHHh----------------hcchh-----------
Q 000145 1561 EPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLA----------------GIGIL----------- 1613 (2054)
Q Consensus 1561 ~~l~~~l~s~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~pl~~~~----------------~~~~~----------- 1613 (2054)
|+|+++||| |||||+++||||.||||+|+|++|+|||||+||+|.. ..|=+
T Consensus 1695 ~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1772 (2102)
T PLN03200 1695 EALLELLRS--HQCEEAAARLLEALFNNVKVREMKATKYAIAPLSQYLLDPQTRSQQARLLAALALGDLFQHEGLARSTD 1772 (2102)
T ss_pred HHHHHHHHh--ccchhHHHHHHHHHhcCcchhhhhhHHHhcCcHHHHhcCcccccHHHHHHHHHHhccchhhhhhhhccC
Confidence 999999999 9999999999999999999999999999999999963 11211
Q ss_pred ------------------hHHHHHHHHHHHH---hhhhhhHHhhcCCceeeehhhhccCCCCC-------------h---
Q 000145 1614 ------------------NLQQTAVKALEKI---STSWPKAVADAGGIFEIAKVIIQDDPQPP-------------H--- 1656 (2054)
Q Consensus 1614 ------------------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~--- 1656 (2054)
..|--||-||.+. |.+=-++||++|||.-+--.+.-.||+-. |
T Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1852 (2102)
T PLN03200 1773 AVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQAALLIKLLFSNHTIQ 1852 (2102)
T ss_pred cHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHHHHHHHHHHHccchHH
Confidence 1123345555554 55566799999999887777777777643 2
Q ss_pred -----------------hhHHhHH----------HHHhhhhccCccceeechHHHHHHHhhhhchhHHHHHhhhHHhhcc
Q 000145 1657 -----------------SLWESAA----------LVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHER 1709 (2054)
Q Consensus 1657 -----------------~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1709 (2054)
+||-++. .++.|.=++...---+.-++-||--|.|++|.+=--||++|..+-.
T Consensus 1853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1932 (2102)
T PLN03200 1853 EYASSELIRALTAALEKDLWSTATVNEEVLRALNVLFSNFPKLRATEAATLCIPHLVGALKSGSEAAQEAALDTLFLLRQ 1932 (2102)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHhcCccccccchHHhhHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 4565544 3445543333333334567889999999999999999999988765
Q ss_pred cCcCc------HHHHHHhhhHHHHHHHHhhc--ccchhHHhHHHHHhcccccccccc
Q 000145 1710 TDASS------AEQMTQAGVIDALLDLLRSH--QCEETSGRLLEALFNNGRIRQMKV 1758 (2054)
Q Consensus 1710 ~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 1758 (2054)
+=+.+ ++.|+-+-||--|--|.|+- +-.|-+.-|+|-|.-.-+||=.+.
T Consensus 1933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~V~V~~a 1989 (2102)
T PLN03200 1933 SWSAMPAEVARAQAMAAAEAIPVLQMLMKSGPPRFHERAESLLQCLPGSLTVTIKRG 1989 (2102)
T ss_pred hhccCcHHHHHHHHHHHhhhhHHHHHHHHhCCccHHHHHHHHHhhCCcceEEEEeec
Confidence 54443 57788888888888888872 224778889999887766664443
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=301.46 Aligned_cols=414 Identities=19% Similarity=0.206 Sum_probs=352.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccC--ccchhhhhccccHHHHHhhhc-CCChhhhHHHHHHHHHHhhhccchhh
Q 000145 434 KKVLIGLITMATADVREYLILSLTKLCRRE--VGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKW 510 (2054)
Q Consensus 434 I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s--~e~r~~Ive~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLs~~s~e~r~ 510 (2054)
.+.++..+.+.+.+.|..+...++.+.... +... .+...|.+|.++++++ ..++.+|..|+|+|.|+++++.+...
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~-~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPID-EVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHH-HHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 566778888888888999998888876542 2333 4445599999999997 55688999999999999998888999
Q ss_pred HHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh-hHHHHHHHHHHHHHHhh
Q 000145 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-KGQDASAMALTKLIRAA 589 (2054)
Q Consensus 511 ~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~-evq~~AA~AL~nLs~~~ 589 (2054)
.++++|++|.|+++|.+++.+++++|+|+|+|++.++..+|..+.+.|++++|+.++...++ ...+++.|+|.||++..
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999987776 78899999999999773
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcCh
Q 000145 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ 669 (2054)
Q Consensus 590 e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~ 669 (2054)
+ ..+. -+.+. ..++.|..++++.|+++...|+|++++|+.+..
T Consensus 227 ~-------------P~P~------------------~~~v~------~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~n 269 (514)
T KOG0166|consen 227 N-------------PSPP------------------FDVVA------PILPALLRLLHSTDEEVLTDACWALSYLTDGSN 269 (514)
T ss_pred C-------------CCCc------------------HHHHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh
Confidence 2 1111 11111 258999999999999999999999999999899
Q ss_pred hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHHHHHH
Q 000145 670 DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAAL 748 (2054)
Q Consensus 670 e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~Al~AL 748 (2054)
+....+++.|+++.|+.+|...+..++..|.++++|+..++ |.+.+.+++.|+++.|..++.. ....++++|+|++
T Consensus 270 e~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~---d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~i 346 (514)
T KOG0166|consen 270 EKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGS---DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTI 346 (514)
T ss_pred HHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeecc---HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999998754 3688899999999999999994 5566999999999
Q ss_pred HHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCch
Q 000145 749 ANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGT 827 (2054)
Q Consensus 749 ~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~ 827 (2054)
.|+.. +++..+.+++.|.+|.|+.+|..++-++|..|+|+++|++.... ......+.+.|.+++++++|...+. +
T Consensus 347 SNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~--~ 422 (514)
T KOG0166|consen 347 SNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDV--K 422 (514)
T ss_pred HHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCCh--H
Confidence 99975 67778899999999999999999999999999999999998753 5556677888999999999964443 3
Q ss_pred hHHHHHHHHHHHhhcccCCCccC-CcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccC
Q 000145 828 DVADALEVVALLARTKQGLNFTY-PPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 828 ~~~~AL~ALa~La~~~~~~~~i~-~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
....++.+|.++-.......... +++....+..++++.+..+..+++.++..+|..++.+++.+.
T Consensus 423 ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 423 IILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 48889999998875332211111 455566677889999999999999999999999999999875
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=274.16 Aligned_cols=432 Identities=19% Similarity=0.187 Sum_probs=363.4
Q ss_pred hcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchh
Q 000145 430 HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 430 ~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
..+..++...++++.++.+|..+..++++++-+ .+++..|++.+|+.+|+.-+.++..++|..++++++||+.. +++|
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn-~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk 160 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVN-MENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNK 160 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceec-cCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccch
Confidence 346678888899999999999999999999988 68889999999999999888888889999999999999985 8899
Q ss_pred hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh
Q 000145 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA 589 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~ 589 (2054)
..+...|++.++.++-++.+..+|+++.++|.|++. ..++|+.++..|++|.|+.+++++++++|+.++.++.|++-+.
T Consensus 161 ~kiA~sGaL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 161 VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH
Confidence 999999999999998888899999999999999987 6778888889999999999999999999999999999997441
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc--ccchHHHHHHhccCCHHHHHHHHHHHHHHhhc
Q 000145 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA--NKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2054)
Q Consensus 590 e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~--~GaI~~LV~LLks~s~evre~Aa~ALanLas~ 667 (2054)
. .++.+.+ ...++.||+++.+++++++-.|..+|.||++
T Consensus 240 ~--------------------------------------~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas- 280 (550)
T KOG4224|consen 240 R--------------------------------------ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS- 280 (550)
T ss_pred H--------------------------------------HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-
Confidence 1 1112222 3479999999999999999999999999998
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCC-HHHHHHHHH
Q 000145 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSS-IDAAETAVA 746 (2054)
Q Consensus 668 ~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d-~~Vre~Al~ 746 (2054)
+.+....+++.|.+|.+++++++..-........|+.|++. .+ .+..-+.+.|.++||+.+|..++ .+++-.|..
T Consensus 281 dt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi--hp--lNe~lI~dagfl~pLVrlL~~~dnEeiqchAvs 356 (550)
T KOG4224|consen 281 DTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI--HP--LNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVS 356 (550)
T ss_pred cchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc--cc--CcccceecccchhHHHHHHhcCCchhhhhhHHH
Confidence 88999999999999999999988777777778899999986 33 56667899999999999999865 558999999
Q ss_pred HHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCC
Q 000145 747 ALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMN 825 (2054)
Q Consensus 747 AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~ 825 (2054)
+|.||+. +...+..|...|++|++..++.++.-.+|..-..|+..|+.+ +..+..+.+.|.++.|+.++.+..
T Consensus 357 tLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~----d~~k~~lld~gi~~iLIp~t~s~s-- 430 (550)
T KOG4224|consen 357 TLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN----DNDKEALLDSGIIPILIPWTGSES-- 430 (550)
T ss_pred HHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc----cccHHHHhhcCCcceeecccCccc--
Confidence 9999997 556678899999999999999999999999999999999986 445566677888898998885544
Q ss_pred chhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccc
Q 000145 826 GTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSS 905 (2054)
Q Consensus 826 ~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~ 905 (2054)
...+-.|..+|+++++..+...+..-.|.... .+--..|.+.+.+..-.+++-|.-.+..+..++..++.+|+.+.+.
T Consensus 431 ~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~--~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~~~~~~i~~~dd 508 (550)
T KOG4224|consen 431 EEVRGNAAAALINLSSDVEHYARVIEAWDHPV--QGIQGRLARFLASHELTFRHIARWTIQQLLEDHDLPLTAFIQSSDD 508 (550)
T ss_pred hhhcccHHHHHHhhhhhhHHHHHHHHHhcCcc--hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCccHHHHHhCchh
Confidence 44588899999999976543333333343221 2223456677777777789999999999999988889999988877
Q ss_pred cHHHHHHHHhc
Q 000145 906 SIGALADRIMH 916 (2054)
Q Consensus 906 ~i~~La~~il~ 916 (2054)
-| .+++.++.
T Consensus 509 ii-~~~~~~~~ 518 (550)
T KOG4224|consen 509 II-ELLNDIVA 518 (550)
T ss_pred HH-HHHHHHHH
Confidence 77 56665553
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=271.60 Aligned_cols=417 Identities=16% Similarity=0.188 Sum_probs=346.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcc-cCccchhhhhccccHHHHHhhhc-CCChhhhHHHHHHHHHHhhhccchhhHH
Q 000145 435 KVLIGLITMATADVREYLILSLTKLCR-REVGIWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2054)
Q Consensus 435 ~~LI~LL~ssd~evq~~Aa~AL~~Ls~-~s~e~r~~Ive~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I 512 (2054)
+-|..-+-+.+.+.|..+..-++.+-. ....--+.+++.|.+|.+++++. ....-.+..|+|+|.|++++.......+
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 556666667788888888877776544 33334566778999999999995 5555678899999999999877777888
Q ss_pred HhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh--hHHHHHHHHHHHHHHhhc
Q 000145 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP--KGQDASAMALTKLIRAAD 590 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~--evq~~AA~AL~nLs~~~e 590 (2054)
+++|++|.++++|.+++.++++++.|+|+|++.+++.+|..+.+.|++++++.++.+... ...+++.|+|.||++..+
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn 233 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN 233 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence 899999999999999999999999999999999999999999999999999999987666 678999999999987632
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChh
Q 000145 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 591 ~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e 670 (2054)
..|+ -... ..+++.|..++.+.++++...|+|++.+|+.+..+
T Consensus 234 -------------P~P~------------------w~~i------sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E 276 (526)
T COG5064 234 -------------PPPD------------------WSNI------SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNE 276 (526)
T ss_pred -------------CCCc------------------hHHH------HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHH
Confidence 1111 0011 12578888899999999999999999999998889
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000145 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2054)
Q Consensus 671 ~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~N 750 (2054)
...++.+.|..+.|+++|.+.+..++..|.+.++|+..+. |.+...+++.|+++.+..+|.+....++.+|||.+.|
T Consensus 277 ~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~---D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSN 353 (526)
T COG5064 277 KIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS---DDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISN 353 (526)
T ss_pred HHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC---ccceehheecccHHHHHHHhcChhhhhhhhhheeecc
Confidence 9999999999999999999999999999999999998753 3677889999999999999999999999999999999
Q ss_pred hhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhH
Q 000145 751 LLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDV 829 (2054)
Q Consensus 751 La~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~ 829 (2054)
+.. +.+..+.+++.+.+|+|+++|...+-.+|..|||++.|.....-...++.+.+.+.|.+++|.++|...+... .
T Consensus 354 ITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNki--i 431 (526)
T COG5064 354 ITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKI--I 431 (526)
T ss_pred cccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccc--h
Confidence 964 6777788999999999999999999999999999999998875555677888889999999999997554433 5
Q ss_pred HHHHHHHHHHhhcccC--CCccC--CcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCC
Q 000145 830 ADALEVVALLARTKQG--LNFTY--PPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQP 893 (2054)
Q Consensus 830 ~~AL~ALa~La~~~~~--~~~i~--~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~ 893 (2054)
.-+|+++.+.-+..+. ..... +.+..--+.++.++.+..|..+.+..+.++|..|+.+++++..
T Consensus 432 ev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD 499 (526)
T COG5064 432 EVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEED 499 (526)
T ss_pred hhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcccch
Confidence 5567777776643211 11111 2233334567889999999999999999999999999998653
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=263.78 Aligned_cols=390 Identities=22% Similarity=0.234 Sum_probs=340.4
Q ss_pred HHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccc
Q 000145 395 LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKRE 474 (2054)
Q Consensus 395 Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~g 474 (2054)
...++.+.+.. +|-.+..++++++-+..++..+++..|+.+|+.-+.....++|..++.++.+++.. ++++..|...|
T Consensus 90 vl~llqs~d~~-Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sG 167 (550)
T KOG4224|consen 90 VLALLQSCDKC-IQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSG 167 (550)
T ss_pred HHHHHhCcchh-hhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhcc
Confidence 33455555543 88899999999998888888888999999988888888899999999999999988 78999999999
Q ss_pred cHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
++.++.++-++.+..+|.++..+|.|++. +.++|..++.+|++|.|+.+++++++++|..++.++.|++.+ ...|+.+
T Consensus 168 aL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~L 245 (550)
T KOG4224|consen 168 ALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKIL 245 (550)
T ss_pred chhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHH
Confidence 99999999999999999999999999997 789999999999999999999999999999999999999984 5667777
Q ss_pred HHcC--ChHHHHHhhccCChhHHHHHHHHHHHHHHhh-------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc
Q 000145 555 ESAG--AVPAFLWLLKSGGPKGQDASAMALTKLIRAA-------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ 625 (2054)
Q Consensus 555 ~e~G--aI~aLV~LLkS~~~evq~~AA~AL~nLs~~~-------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~ 625 (2054)
.+.+ .++.|+.+++++++.++..|..+|.|++.+. +.+.+|.++++++++.-..-.....|+++++-..-.
T Consensus 246 aqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplN 325 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLN 325 (550)
T ss_pred HhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCc
Confidence 8777 9999999999999999999999999999774 367899999999876554444556688887633211
Q ss_pred hHHHHhhhhcccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000145 626 EDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2054)
Q Consensus 626 ~d~~~~~l~~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~ 704 (2054)
...+.+.|++++||.+++.+ +++++-+|+..|+||+..+..++..+.+.|+++.+..++.++...++..-..|+.
T Consensus 326 ----e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a 401 (550)
T KOG4224|consen 326 ----EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIA 401 (550)
T ss_pred ----ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHH
Confidence 23478899999999999987 5669999999999999878889999999999999999999999999999999999
Q ss_pred HhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHh------cCcHHHHHHHHcCCC
Q 000145 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLL------EDVVSALTRVLAEGT 778 (2054)
Q Consensus 705 nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~------~g~I~~LV~LL~s~~ 778 (2054)
.|+. . |..|..+.+.|.++.|+.+..+.+.+++..|+.+|.|++.+.+.-.++.+ +|.-..|++++.+..
T Consensus 402 ~Lal--~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~ 477 (550)
T KOG4224|consen 402 QLAL--N--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHE 477 (550)
T ss_pred HHHh--c--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhH
Confidence 9987 3 37788999999999999999999999999999999999987665444432 456678889999999
Q ss_pred HHHHHHHHHHHHHhhhcC
Q 000145 779 SEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 779 ~evr~~Aa~AL~nL~~~~ 796 (2054)
..++.-+.|.+.+|..+.
T Consensus 478 ~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 478 LTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 999999999999999864
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=273.86 Aligned_cols=397 Identities=17% Similarity=0.224 Sum_probs=339.8
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcC---hhhhHHHhhcchHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchh
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGN---IFLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWE 468 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n---~~~~~~L~~~g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~ 468 (2054)
...+..+.+.+.. .+..+...+..+... +.+...+.. |.++.++..+.. .++..|..|+++|.++++.+.+.-.
T Consensus 69 ~~~~~~~~S~~~~-~q~~a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~ 146 (514)
T KOG0166|consen 69 ELMLAALYSDDPQ-QQLTATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTK 146 (514)
T ss_pred HHHHHHHhCCCHH-HHHHHHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcc
Confidence 3344444454443 577787788777543 345555555 999999999974 5599999999999999999888889
Q ss_pred hhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCH-HHHHHHHHHHHHHhcCC
Q 000145 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQ-KAREVAAHVLWILCCHS 547 (2054)
Q Consensus 469 ~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~-~Vre~AA~aL~nLa~~s 547 (2054)
.+++.|.+|.+++++.+++..+++.|+|+|+|++.+++..|..+.+.|++++|+.++...+. ...++++|+|.||+.+.
T Consensus 147 ~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 147 VVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred ccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999899999999999999999999988765 78999999999999876
Q ss_pred hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000145 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2054)
Q Consensus 548 d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~L 619 (2054)
+.-..+-.-..++|.|..++++.|+++...++|++.+|+... +.+++|.|+++|...+..++..+.+++||+
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNI 306 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNI 306 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccce
Confidence 432222223568999999999999999999999999999653 467899999999999999988889999986
Q ss_pred HhhhcchHHHHhhhhcccchHHHHHHhc-cCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000145 620 LTMALQEDLVQKGSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2054)
Q Consensus 620 a~~~~~~d~~~~~l~~~GaI~~LV~LLk-s~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~ 698 (2054)
. ...|...+.+...|+++.|..++. +..+.+|..|+|++.|++.++++..+++++.|.+|.|+.+|+.++.++|++
T Consensus 307 v---tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKE 383 (514)
T KOG0166|consen 307 V---TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKE 383 (514)
T ss_pred e---eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHH
Confidence 4 445555666889999999999998 556779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC------C---hHHHHHHHhcCcHHH
Q 000145 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS------D---PDIAAEVLLEDVVSA 769 (2054)
Q Consensus 699 AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~------~---~e~r~~Iv~~g~I~~ 769 (2054)
|+||+.|++.+..+ ++-..+++.|+++||+++|...|.++...++.+|.|+.. . ......|.+.|++.+
T Consensus 384 AawaIsN~ts~g~~--~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldk 461 (514)
T KOG0166|consen 384 AAWAISNLTSSGTP--EQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDK 461 (514)
T ss_pred HHHHHHhhcccCCH--HHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhH
Confidence 99999999985444 677789999999999999988999998899999999943 1 345667889999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 770 LTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 770 LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+..+-.+.+.++...|...+.+.....
T Consensus 462 iE~LQ~hen~~Iy~~A~~II~~yf~~e 488 (514)
T KOG0166|consen 462 IENLQSHENEEIYKKAYKIIDTYFSEE 488 (514)
T ss_pred HHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999988877643
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-23 Score=233.64 Aligned_cols=385 Identities=16% Similarity=0.176 Sum_probs=316.3
Q ss_pred HHHHHHHHHHHhhc---ChhhhHHHhhcchHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhh
Q 000145 407 VQERVLEAMASLYG---NIFLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~---n~~~~~~L~~~g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~L 482 (2054)
.+..+..-...+.. ++.+ ..+...|+++.++.++.. ...-.|..|+++|.|++.........+++.|++|.++++
T Consensus 87 ~q~qav~kFR~~LS~E~~PPI-q~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiql 165 (526)
T COG5064 87 QQLQAVYKFRKLLSKETSPPI-QPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQL 165 (526)
T ss_pred HHHHHHHHHHHHhccccCCCc-hhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHH
Confidence 44555555555543 2233 345678999999999954 445568899999999999876666778899999999999
Q ss_pred hcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCChhHHHHHHHcCCh
Q 000145 483 LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2054)
Q Consensus 483 L~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI 560 (2054)
|.+++.++++.++|+|+|++..++..|..+...|++.+++.+|.++ +-.+.+++.|+|.||+.....-...-.-..++
T Consensus 166 L~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqal 245 (526)
T COG5064 166 LSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQAL 245 (526)
T ss_pred HcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHH
Confidence 9999999999999999999998899999999999999999999877 45788999999999987432211111114578
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 561 PAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 561 ~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
|.|.+++.+.++++...|+|++..++..+ +.+..+.|+++|..++..++.-+.+.+|++... .|.....
T Consensus 246 piL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG---~D~QTqv 322 (526)
T COG5064 246 PILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG---SDDQTQV 322 (526)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec---Cccceeh
Confidence 99999999999999999999999998664 345668899999999999988888888887533 3334456
Q ss_pred hhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc
Q 000145 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 633 l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
+...|+++.+-.+|.+..+.+|..|+|.+.|+..++.+...++++...+|+|+++|...+-.+++.|+||+.|...+...
T Consensus 323 iI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~ 402 (526)
T COG5064 323 IINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLN 402 (526)
T ss_pred heecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999884333
Q ss_pred ccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-----------Ch-HHHHHHHhcCcHHHHHHHHcCCCHH
Q 000145 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-----------DP-DIAAEVLLEDVVSALTRVLAEGTSE 780 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-----------~~-e~r~~Iv~~g~I~~LV~LL~s~~~e 780 (2054)
.++.-..++..|+++||+++|...+..+.+-++.++-|+.. ++ .....+.+.|++..+..+-.+.+.+
T Consensus 403 ~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~ 482 (526)
T COG5064 403 RPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRT 482 (526)
T ss_pred CchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccH
Confidence 34555678999999999999999887788888999988843 11 1234456689999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 000145 781 GKKNASRALHQLLKH 795 (2054)
Q Consensus 781 vr~~Aa~AL~nL~~~ 795 (2054)
+-.+|-.++......
T Consensus 483 iy~KAYsIIe~fFge 497 (526)
T COG5064 483 IYDKAYSIIEKFFGE 497 (526)
T ss_pred HHHHHHHHHHHHccc
Confidence 999998887766543
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-17 Score=211.71 Aligned_cols=517 Identities=15% Similarity=0.149 Sum_probs=378.0
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC---CHHHHHHHHHHHHHhc
Q 000145 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG---TPLAKVNVAATLSVLC 112 (2054)
Q Consensus 36 ~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~---s~evr~~AA~vL~~Ls 112 (2054)
..+..+...||.|=.. ..+|.++...+..|++.+++-..++.. .-.+..|...|+.. +.++-.+.+.++..+|
T Consensus 120 a~~~~~d~yiE~lYe~---~~ek~~~~~~il~La~~~~NL~~l~~n-e~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS 195 (708)
T PF05804_consen 120 ASINDLDEYIELLYED---IPEKIRGTSLILQLARNPENLEELVQN-ETLMSALARVLREDWKKSVELATNIIYIFFCFS 195 (708)
T ss_pred CCHHHHHHHHHHHhcc---cHHHHHHHHHHHHHhCCcchHHHHHHh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4577888888888543 355888899999999999777776665 77899999999763 7788888899998888
Q ss_pred cCchhHHHHHhcCChHHHHHhhccCCHHHHHHHH-----HHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCC
Q 000145 113 KDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAA-----EALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQD 187 (2054)
Q Consensus 113 ~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa-----~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d 187 (2054)
.-.+....+.....-..-++++.. +++..-. ......+.. .+..++.+-+ ....+-.+++. +
T Consensus 196 ~f~~fH~~l~~~kiG~l~m~iie~---Elkr~~~w~~~l~~~~~~~~~----~~~~~~~~~~--~~kk~~~l~~k---Q- 262 (708)
T PF05804_consen 196 NFSQFHPILAHYKIGSLCMEIIEH---ELKRHDLWQEELRKKKKAAEE----KPEAKKDYEK--ELKKLQTLIRK---Q- 262 (708)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhhcc----chhhhhhHHH--HHHHHHHHHHH---H-
Confidence 776666666554333333455533 2222221 111111110 1111111111 22344444432 2
Q ss_pred hhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHh
Q 000145 188 NVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLV 267 (2054)
Q Consensus 188 ~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL 267 (2054)
..+...+...|.|++.+.... ..|.+.|+++.|+++|.+.+.+....++.+|.+|+ ...+++..+.+.|+++.|.+++
T Consensus 263 eqLlrv~~~lLlNLAed~~ve-~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~m~~~giV~kL~kLl 340 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLAEDPRVE-LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLS-IFKENKDEMAESGIVEKLLKLL 340 (708)
T ss_pred HHHHHHHHHHHHHHhcChHHH-HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHh
Confidence 245668889999999977544 67889999999999999999999999999999999 4455788899999999999999
Q ss_pred ccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHH
Q 000145 268 GQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVY 347 (2054)
Q Consensus 268 ~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~ 347 (2054)
++ .+...+..+..+|.||+++ ++.|..|...|.+|.|+.++.++. .+..++..
T Consensus 341 ~s-~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~-----------~~~val~i-------------- 393 (708)
T PF05804_consen 341 PS-ENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN-----------FREVALKI-------------- 393 (708)
T ss_pred cC-CCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc-----------hHHHHHHH--------------
Confidence 84 5668899999999999995 999999999999999999887643 12223322
Q ss_pred hhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHH
Q 000145 348 LGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQW 427 (2054)
Q Consensus 348 L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~ 427 (2054)
|.+++.++..+..
T Consensus 394 -------------------------------------------------------------------Ly~LS~dd~~r~~ 406 (708)
T PF05804_consen 394 -------------------------------------------------------------------LYNLSMDDEARSM 406 (708)
T ss_pred -------------------------------------------------------------------HHHhccCHhhHHH
Confidence 3333334444555
Q ss_pred HhhcchHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhh-cCCChhhhHHHHHHHHHHhhhc
Q 000145 428 VSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL-GLSSEQHQEYAVQLIAILTEQV 505 (2054)
Q Consensus 428 L~~~g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLs~~s 505 (2054)
+...++++.++.++.. +++.++..++..+.|++.+ +.+.+.+.+.+|++.|++.. +..++ --.+.++|++.|.
T Consensus 407 f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~-~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~ 481 (708)
T PF05804_consen 407 FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN-KRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHD 481 (708)
T ss_pred HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC-HHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcC
Confidence 6666788888886654 4566777888899999988 67778888889999988754 44332 2447899999976
Q ss_pred cchhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccC--ChhHHHHHHHHH
Q 000145 506 DDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG--GPKGQDASAMAL 582 (2054)
Q Consensus 506 ~e~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~--~~evq~~AA~AL 582 (2054)
+..+..+. +.+.+|+.++.++ +++....+.++|+||+..+......+.+.+.+|-|..+|..+ .+++.-.++..+
T Consensus 482 ~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~ 559 (708)
T PF05804_consen 482 GPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILL 559 (708)
T ss_pred chHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHH
Confidence 56665553 4678888888776 788999999999999987777888888899999999999765 357888888999
Q ss_pred HHHHHhh-------chhhHHHHHHHhcCC--CcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHH
Q 000145 583 TKLIRAA-------DSATINQLLALLLGD--SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEEN 653 (2054)
Q Consensus 583 ~nLs~~~-------e~~~Ip~Lv~LL~~~--~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~ev 653 (2054)
+.++.++ +.+.++.|+++|+.. |++...+...+...+ ..+++.+...+.+.+++..|+.++++.|.++
T Consensus 560 gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~l---l~h~~tr~~ll~~~~~~~ylidL~~d~N~~i 636 (708)
T PF05804_consen 560 GTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQL---LFHEETREVLLKETEIPAYLIDLMHDKNAEI 636 (708)
T ss_pred HHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHH---HcChHHHHHHHhccchHHHHHHHhcCCCHHH
Confidence 9988764 357899999999853 344444444444444 4456666666777889999999999999999
Q ss_pred HHHHHHHHHHHhhcChhhhhhh
Q 000145 654 QEYAASVLADLFSMRQDICGSL 675 (2054)
Q Consensus 654 re~Aa~ALanLas~~~e~r~~I 675 (2054)
|..|-.+|--++..+++-...+
T Consensus 637 r~~~d~~Ldii~e~d~~w~~ri 658 (708)
T PF05804_consen 637 RKVCDNALDIIAEYDEEWAERI 658 (708)
T ss_pred HHHHHHHHHHHHHhCHHHHHHh
Confidence 9999999999888665544443
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-17 Score=210.38 Aligned_cols=373 Identities=16% Similarity=0.158 Sum_probs=309.2
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~ 486 (2054)
+..-+...|.|++.+..+...+.+.+++++|+.++.+++.+.+..++.+|.+++.. .+++..+.+.|.++.|.+++.++
T Consensus 265 Llrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~ 343 (708)
T PF05804_consen 265 LLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSE 343 (708)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCC
Confidence 44456677999999999999999999999999999999999999999999999998 68999999999999999999999
Q ss_pred ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHh
Q 000145 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566 (2054)
Q Consensus 487 d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~L 566 (2054)
+...+..++++|.||+. +++.|..+++.|.+|.|+.+|.++ ..+..+..+|++|+. +++.|..+...+++|.++.+
T Consensus 344 ~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~-dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 344 NEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSM-DDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhcc-CHhhHHHHhhcchHHHHHHH
Confidence 99999999999999999 689999999999999999999864 466779999999998 56788999999999999986
Q ss_pred h-ccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccc
Q 000145 567 L-KSGGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKG 638 (2054)
Q Consensus 567 L-kS~~~evq~~AA~AL~nLs~~~e-------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~Ga 638 (2054)
+ ..+++++.......+.|++.+.. .+.++.|++......+ ......++|++.+... .+..+ .+.
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~---~k~~f--~~~ 491 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGP---LKELF--VDF 491 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCch---HHHHH--HHH
Confidence 5 44667777788899999987742 3567777777654332 2345678888765321 22222 246
Q ss_pred hHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCCCcccc
Q 000145 639 LRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--TQMVATQSARALGALSRPTKTKTT 715 (2054)
Q Consensus 639 I~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg--s~~vr~~AA~AL~nLs~s~~~~d~ 715 (2054)
+..|+..+..+ +++..-.+.++|+||...+.+....+.+.+.++.|.++|..+ .+.+..++...++.++. .+ .
T Consensus 492 i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d~--~ 567 (708)
T PF05804_consen 492 IGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--DP--E 567 (708)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--CH--H
Confidence 88888888765 788899999999999874444455555679999999999865 45788889999998886 22 5
Q ss_pred hhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCChHHHHHHHh-cCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 716 NKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLL-EDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 716 ~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~~~e~r~~Iv~-~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
....+.+.|.++.|+++|+. .|.+..-+.+.++..|..+++.|..+++ .+++..|+.++++.++++|+-|-.+|-=+
T Consensus 568 ~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 568 CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDII 647 (708)
T ss_pred HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 66677889999999999987 5788888999999999999999998765 67788899999999999999999999888
Q ss_pred hhcC
Q 000145 793 LKHF 796 (2054)
Q Consensus 793 ~~~~ 796 (2054)
+...
T Consensus 648 ~e~d 651 (708)
T PF05804_consen 648 AEYD 651 (708)
T ss_pred HHhC
Confidence 7754
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.6e-16 Score=201.73 Aligned_cols=379 Identities=17% Similarity=0.187 Sum_probs=285.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc--hhhH
Q 000145 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD--SKWA 511 (2054)
Q Consensus 434 I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e--~r~~ 511 (2054)
.+-.+.++.+.++.+|.+|+..+.++|+.+...+..+.+.|||+.|+.++.+.+.+++..|+++|+||...... ++..
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKla 314 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLA 314 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchh
Confidence 44567778899999999999999999999888899999999999999999999999999999999999987655 8999
Q ss_pred HHhhCCCchHhhhhhc-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc
Q 000145 512 ITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD 590 (2054)
Q Consensus 512 I~~aGaIp~LV~LL~s-~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e 590 (2054)
|.+.++++.++++|+. .|.++++..+++|+||+.+ |..+..+. ..++..|...+-.+... + .+
T Consensus 315 i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii-~~al~tLt~~vI~P~Sg------------w--~~ 378 (717)
T KOG1048|consen 315 IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLII-TSALSTLTDNVIIPHSG------------W--EE 378 (717)
T ss_pred hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHH-HHHHHHHHHhhcccccc------------c--CC
Confidence 9999999999999986 6999999999999999985 55555443 33444444322110000 0 00
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc------CCHHHHHHHHHHHHHH
Q 000145 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS------SNEENQEYAASVLADL 664 (2054)
Q Consensus 591 ~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks------~s~evre~Aa~ALanL 664 (2054)
+-.+ -+..+.++...+.+||+|++.. ..+..++.-...|.|+.|+.++++ .+....|+|+++|.||
T Consensus 379 -~~~~-----~~~~~~~vf~n~tgcLRNlSs~--~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNL 450 (717)
T KOG1048|consen 379 -EPAP-----RKAEDSTVFRNVTGCLRNLSSA--GQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNL 450 (717)
T ss_pred -CCcc-----cccccceeeehhhhhhccccch--hHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhc
Confidence 0000 1222445667788888887632 344556666678899999998873 3788899999999999
Q ss_pred hhcCh-------------------------------hhhh----------------------hhhhCCCHHHHHHHhc-c
Q 000145 665 FSMRQ-------------------------------DICG----------------------SLATDEIVNPCMRLLT-S 690 (2054)
Q Consensus 665 as~~~-------------------------------e~r~----------------------~Iv~~g~V~~Lv~LL~-d 690 (2054)
...-. ...+ ..+...+|..-..++. +
T Consensus 451 SYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s 530 (717)
T KOG1048|consen 451 SYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALS 530 (717)
T ss_pred CchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHh
Confidence 76311 0000 0222335556555554 4
Q ss_pred CCHHHHHHHHHHHHHhhCCCCc-ccchhHHH-HhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHH
Q 000145 691 NTQMVATQSARALGALSRPTKT-KTTNKMSY-IAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVS 768 (2054)
Q Consensus 691 gs~~vr~~AA~AL~nLs~s~~~-~d~~r~~I-~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~ 768 (2054)
.++.+.+.++.||.|++.+.+. .+..+..+ .++.+.++|+++|+.++++|...++.+|.||+.|+.++..|. .++++
T Consensus 531 ~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~ 609 (717)
T KOG1048|consen 531 KNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIP 609 (717)
T ss_pred cchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHH
Confidence 5788999999999999984443 23445545 778899999999999999999999999999999999998887 68999
Q ss_pred HHHHHHcCCC------HHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 769 ALTRVLAEGT------SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 769 ~LV~LL~s~~------~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
.|+++|.+.. +++-..++..|.|+...+ -..+.+....+++++|+.+..+ ....+....|-..|..|-.
T Consensus 610 ~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~---~~nAkdl~~~~g~~kL~~I~~s-~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 610 DLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKN---VLNAKDLLEIKGIPKLRLISKS-QHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHh---HHHHHHHHhccChHHHHHHhcc-cCCHHHHHHHHHHHHHHHH
Confidence 9999998763 588889999999999765 3455566667899999999986 4444455566556665543
|
|
| >KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.8e-16 Score=195.05 Aligned_cols=421 Identities=20% Similarity=0.166 Sum_probs=301.1
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC
Q 000145 126 CIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205 (2054)
Q Consensus 126 aIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~ 205 (2054)
-+|..+.+|.+.++.++..|+.-|..+|.+ +...++.+.+.|+|+.|+.+|...+ ..++..|+++|+||.-++
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfg----d~~ik~~vrqlggI~kLv~Ll~~~~---~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFG----DNKIKSRVRQLGGIPKLVALLDHRN---DEVQRQACGALRNLVFGK 306 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhh----hHHHHHHHHHhccHHHHHHHhcCCc---HHHHHHHHHHHHhhhccc
Confidence 367888899889999999999999999984 6678889999999999999999877 469999999999999998
Q ss_pred Cc--hhHHHHhhCChHHHHhhhcc-CCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccC---------C--
Q 000145 206 DG--YWRATLEAGGVDIIVGLLSS-DNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN---------N-- 271 (2054)
Q Consensus 206 e~--r~~aI~eaGGI~~LV~LL~s-~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~---------~-- 271 (2054)
.+ ++..|.+.+||+.++++|.. .+.++++.+..+||||+.. +..+..+...++..|..-.-.. .
T Consensus 307 ~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~--D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~ 384 (717)
T KOG1048|consen 307 STDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN--DALKMLIITSALSTLTDNVIIPHSGWEEEPAPRK 384 (717)
T ss_pred CCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch--hHHHHHHHHHHHHHHHHhhcccccccCCCCcccc
Confidence 76 88899999999999999987 6789999999999999955 2233333334555554433211 1
Q ss_pred --ChhHHHHHHHHHHHHhhccHHHHHHHHh-cCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHH-H
Q 000145 272 --DISVRASAADALEALSSKSIKAKKAVVA-ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVV-Y 347 (2054)
Q Consensus 272 --d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~e-aggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~-~ 347 (2054)
+..+-..+..+|.|+++.+.+.|+.|.+ .|.++.|+-.+..- ...+.+.+..-++|+|.|.|++.-+...++ .
T Consensus 385 ~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~---i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~ 461 (717)
T KOG1048|consen 385 AEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA---IQKSDLDSKSVENCVCILRNLSYRLEAEVPPK 461 (717)
T ss_pred cccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH---HHhccccchhHHHHHHHHhhcCchhhhhcCHh
Confidence 2456678999999999988999999988 77889998777531 111223344668999999998754332211 0
Q ss_pred hhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCC--CChhhHHHHHHHHHHHhhcChhhh
Q 000145 348 LGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKP--HDNKLVQERVLEAMASLYGNIFLS 425 (2054)
Q Consensus 348 L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~--~~~e~Vq~~Aa~AL~~L~~n~~~~ 425 (2054)
..+.+.+... +. ...... +....+....+. ...+++ .+-....++.-.
T Consensus 462 ~~~~~~~~~~----------------~~--~~~~~~------~~~gcf~~k~~k~~~~~~~~------~~pe~~~~pkG~ 511 (717)
T KOG1048|consen 462 YRQVLANIAR----------------LP--GVGPPA------ESVGCFGFKKRKSDDNCDDL------PIPERATAPKGS 511 (717)
T ss_pred hhhHhhcccc----------------cc--cCCCcc------cccccccchhhhchhccccc------CCcccccCCCCc
Confidence 0000000000 00 000000 000001000000 000000 000112233344
Q ss_pred HHHhhcchHHHHHHHhc-cCCHHHHHHHHHHHHHhcccCc----cchhhh-hccccHHHHHhhhcCCChhhhHHHHHHHH
Q 000145 426 QWVSHAEAKKVLIGLIT-MATADVREYLILSLTKLCRREV----GIWEAI-GKREGIQLLISLLGLSSEQHQEYAVQLIA 499 (2054)
Q Consensus 426 ~~L~~~g~I~~LI~LL~-ssd~evq~~Aa~AL~~Ls~~s~----e~r~~I-ve~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2054)
.++++...+++.+.++. +.++.+.+.++.+|.|++.... ..+..+ .+..|.|.++++++.+++.+.+.++.+|+
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR 591 (717)
T ss_pred eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence 56788888888666665 4568899999999999986532 234444 67789999999999999999999999999
Q ss_pred HHhhhccchhhHHHhhCCCchHhhhhhcC------CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhcc-CCh
Q 000145 500 ILTEQVDDSKWAITAAGGIPPLVQLLEAG------SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS-GGP 572 (2054)
Q Consensus 500 nLs~~s~e~r~~I~~aGaIp~LV~LL~s~------s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS-~~~ 572 (2054)
||+. +..++..|- .++++.|++.|..+ +.++...++.+|.|+...+..+.+-+.+.++++.|+.+.++ .++
T Consensus 592 Nls~-d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~ 669 (717)
T KOG1048|consen 592 NLSR-DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSP 669 (717)
T ss_pred hhcc-Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCH
Confidence 9999 677877776 77999999999654 47889999999999998777777777889999999998877 456
Q ss_pred hHHHHHHHHHHHHHHhhc
Q 000145 573 KGQDASAMALTKLIRAAD 590 (2054)
Q Consensus 573 evq~~AA~AL~nLs~~~e 590 (2054)
..-+.|...|..|....+
T Consensus 670 k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 670 KEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888888887643
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.9e-13 Score=152.62 Aligned_cols=376 Identities=17% Similarity=0.182 Sum_probs=280.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc--HHHHHHHhhhcCcHHHHHHHHcc---CCHHHHHHHHHHHHHhccCc
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAK--KEARLLIGSHAQAMPLFISILRS---GTPLAKVNVAATLSVLCKDE 115 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~--d~ar~~I~~~aGgVp~LV~LLks---~s~evr~~AA~vL~~Ls~~e 115 (2054)
+.+++..++.+-. +.-++....|.+++.+. +.+.++.....|+.+.++-++.. ++..+..++..+|..+.
T Consensus 61 i~~~~~~i~e~i~--~~~~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt--- 135 (461)
T KOG4199|consen 61 INETVDKIKEHIG--QKLEETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLT--- 135 (461)
T ss_pred HHHhHHHHHHHHH--hhhHHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhh---
Confidence 5555555544321 12233444555554322 23444444447888888877654 45556666666665553
Q ss_pred hhHHHHHhcCChHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHH
Q 000145 116 DLRLKVLLGGCIPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGF 193 (2054)
Q Consensus 116 e~r~~v~~~GaIp~LV~LL~s--ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~ 193 (2054)
..+..+....+...++++|.. ++.++.....+.+..-|. ..+.+|+.+++.|+.+.+.+.|...++. .+...
T Consensus 136 ~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~----~hE~nrQ~~m~~~il~Li~~~l~~~gk~--~~VRe 209 (461)
T KOG4199|consen 136 HKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI----MHEVNRQLFMELKILELILQVLNREGKT--RTVRE 209 (461)
T ss_pred cCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH----HhHHHHHHHHHhhHHHHHHHHHcccCcc--HHHHH
Confidence 455567788899999999987 688898888899998887 3678999999999999999888877654 36778
Q ss_pred HHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCCh
Q 000145 194 VTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDI 273 (2054)
Q Consensus 194 Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~ 273 (2054)
+.++++-|..+++-|..+ .....+| +.+...|++..|+..++..-++
T Consensus 210 l~~a~r~l~~dDDiRV~f------------------g~ah~hA---------------r~ia~e~~l~~L~Eal~A~~dp 256 (461)
T KOG4199|consen 210 LYDAIRALLTDDDIRVVF------------------GQAHGHA---------------RTIAKEGILTALTEALQAGIDP 256 (461)
T ss_pred HHHHHHHhcCCCceeeec------------------chhhHHH---------------HHHHHhhhHHHHHHHHHccCCc
Confidence 899999998887765110 1122222 3445567788888888766677
Q ss_pred hHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcC
Q 000145 274 SVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQ 353 (2054)
Q Consensus 274 ~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~ 353 (2054)
.+-.....+|+.|+.. ++.++.+.+.||++.|++.+.+....- .+
T Consensus 257 ~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~--------~r-------------------------- 301 (461)
T KOG4199|consen 257 DSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQG--------NR-------------------------- 301 (461)
T ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhh--------HH--------------------------
Confidence 7788889999999995 999999999999999999776533110 00
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcch
Q 000145 354 SPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEA 433 (2054)
Q Consensus 354 s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~ 433 (2054)
..-..++..|..++++++++..+++.++
T Consensus 302 ----------------------------------------------------~l~k~~lslLralAG~DsvKs~IV~~gg 329 (461)
T KOG4199|consen 302 ----------------------------------------------------TLAKTCLSLLRALAGSDSVKSTIVEKGG 329 (461)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHhCCCchHHHHHHhcC
Confidence 0123444556677888899999999999
Q ss_pred HHHHHHHhc--cCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC--ChhhhHHHHHHHHHHhhhccchh
Q 000145 434 KKVLIGLIT--MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS--SEQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 434 I~~LI~LL~--ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~--d~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
.+.++.++. +.++.+...++.+++.++...+++...+++.|+-...++.++-. ...+|+++++.++|+..++.+++
T Consensus 330 ~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~ 409 (461)
T KOG4199|consen 330 LDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR 409 (461)
T ss_pred hHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999988764 46788888899999999999899999999999988888888754 34589999999999999888888
Q ss_pred hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCCh
Q 000145 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE 548 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd 548 (2054)
..+... |++.|+..-+...+..+..+..+|+.|+++..
T Consensus 410 ~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~v~ 447 (461)
T KOG4199|consen 410 TILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCDVY 447 (461)
T ss_pred chHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcchh
Confidence 877765 78899998889999999999999999998644
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.3e-14 Score=180.98 Aligned_cols=365 Identities=17% Similarity=0.160 Sum_probs=285.5
Q ss_pred HHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCC---HHHHHHHHHHHHHhcccCccchhhh
Q 000145 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMAT---ADVREYLILSLTKLCRREVGIWEAI 470 (2054)
Q Consensus 394 ~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd---~evq~~Aa~AL~~Ls~~s~e~r~~I 470 (2054)
.|..++...+. +...+.+..+..++.-+..+...+++++|++++.-.+ .+.+.+|-.+|.|+....++.+..-
T Consensus 201 sllsml~t~D~----ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~R 276 (2195)
T KOG2122|consen 201 SLLSMLGTDDE----EEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGR 276 (2195)
T ss_pred HHhhhcccCCH----HHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhH
Confidence 44455555543 4556777778888888888999999999999996644 5778889999999988777665444
Q ss_pred hccccHHHHHhh----------hcCCC-------hhhhH-HHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC----
Q 000145 471 GKREGIQLLISL----------LGLSS-------EQHQE-YAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG---- 528 (2054)
Q Consensus 471 ve~ggIp~LV~L----------L~s~d-------~~Vr~-~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~---- 528 (2054)
.+...++.|-++ +.... ...+. .|++.|.++++ ++++|..+.+.|++..+.+|+.-.
T Consensus 277 RE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mh 355 (2195)
T KOG2122|consen 277 REKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMH 355 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 444455444322 22111 12333 78888999998 799999999999999999987421
Q ss_pred --------CHHHHHHHHHHHHHHhcCChhHHHHHH-HcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHH
Q 000145 529 --------SQKAREVAAHVLWILCCHSEDIRACVE-SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLA 599 (2054)
Q Consensus 529 --------s~~Vre~AA~aL~nLa~~sd~~r~~I~-e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~ 599 (2054)
...+|..+..+|.||+..+..++..+. ..|.++.+|..|.+...++..-.+..|.||+...+.+
T Consensus 356 gp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~n------- 428 (2195)
T KOG2122|consen 356 GPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSN------- 428 (2195)
T ss_pred CCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhcccccccc-------
Confidence 246799999999999997776666554 4799999999999998899999999999998764321
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHH-HhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000145 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ-VLNSSNEENQEYAASVLADLFSMRQDICGSLATD 678 (2054)
Q Consensus 600 LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~-LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~ 678 (2054)
. ++.+.+.|-+..|+. .++..++.+......+|+||+.+..+++..|...
T Consensus 429 --------m---------------------KkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaV 479 (2195)
T KOG2122|consen 429 --------M---------------------KKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAV 479 (2195)
T ss_pred --------H---------------------HHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcc
Confidence 1 111233445555555 3555677788889999999999999999999886
Q ss_pred -CCHHHHHHHhccC----CHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 679 -EIVNPCMRLLTSN----TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 679 -g~V~~Lv~LL~dg----s~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
|++..|+.+|... +-.+.+.|-..|.|.+...-.....|+.+.+...+..|+..|++.+-.+..++|++|+||+.
T Consensus 480 DGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSA 559 (2195)
T KOG2122|consen 480 DGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSA 559 (2195)
T ss_pred cchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhc
Confidence 8899999999754 44677888899999887222223788889999999999999999999999999999999975
Q ss_pred -ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCc
Q 000145 754 -DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVG 799 (2054)
Q Consensus 754 -~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~ 799 (2054)
+++-++.+.+.|+++.|-.++++.|.++-+-++.+|.||....|..
T Consensus 560 R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 560 RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchh
Confidence 8889999999999999999999999999999999999999987653
|
|
| >KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.8e-13 Score=173.62 Aligned_cols=360 Identities=16% Similarity=0.146 Sum_probs=276.3
Q ss_pred HHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCC---HHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhc
Q 000145 192 GFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN---AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG 268 (2054)
Q Consensus 192 e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s---~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~ 268 (2054)
+...+.|..+++..+.. ..++..|+++.|+++|..++ .+.+..+-.+|+|+...+++......+..++..|-++..
T Consensus 212 ee~ar~fLemSss~esC-aamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIra 290 (2195)
T KOG2122|consen 212 EEMARTFLEMSSSPESC-AAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRA 290 (2195)
T ss_pred HHHHHHHHHhccCchhh-HHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHH
Confidence 34567788888876655 88999999999999997654 578889999999999888776666555555555443322
Q ss_pred ----------c------CCChhHHH-HHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHH
Q 000145 269 ----------Q------NNDISVRA-SAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHAT 331 (2054)
Q Consensus 269 ----------s------~~d~~Vr~-~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al 331 (2054)
. +...+-+. .|..+|..++++ ++.|+.|.+.||++.|-+++.-.. +
T Consensus 291 YC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh---------------~- 353 (2195)
T KOG2122|consen 291 YCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDH---------------E- 353 (2195)
T ss_pred HHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHH---------------H-
Confidence 0 11123344 566678888885 999999999999888877542100 0
Q ss_pred HHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHH
Q 000145 332 RALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERV 411 (2054)
Q Consensus 332 ~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~A 411 (2054)
||. +.. .+...-.+|.++
T Consensus 354 -----------------------------------------mhg---p~t------------------nd~~~~aLRrYa 371 (2195)
T KOG2122|consen 354 -----------------------------------------MHG---PET------------------NDGECNALRRYA 371 (2195)
T ss_pred -----------------------------------------hcC---CCC------------------CcHHHHHHHHHH
Confidence 000 000 000011278899
Q ss_pred HHHHHHh-hcChhhhHHHhh-cchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccc-hhhhhccccHHHHHh-hhcCCC
Q 000145 412 LEAMASL-YGNIFLSQWVSH-AEAKKVLIGLITMATADVREYLILSLTKLCRREVGI-WEAIGKREGIQLLIS-LLGLSS 487 (2054)
Q Consensus 412 a~AL~~L-~~n~~~~~~L~~-~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~-r~~Ive~ggIp~LV~-LL~s~d 487 (2054)
.++|.|| +++..++..+.. .++++.+|..+.+..++.+...+..|+||++.-+.+ +..+.+.|.+-.|.. .++...
T Consensus 372 ~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~k 451 (2195)
T KOG2122|consen 372 GMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKK 451 (2195)
T ss_pred HHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcc
Confidence 9999999 566677766654 578999999999999999999999999999975544 556667787888877 455666
Q ss_pred hhhhHHHHHHHHHHhhhccchhhHHHh-hCCCchHhhhhhcC----CHHHHHHHHHHHHHHhc---CChhHHHHHHHcCC
Q 000145 488 EQHQEYAVQLIAILTEQVDDSKWAITA-AGGIPPLVQLLEAG----SQKAREVAAHVLWILCC---HSEDIRACVESAGA 559 (2054)
Q Consensus 488 ~~Vr~~Aa~aL~nLs~~s~e~r~~I~~-aGaIp~LV~LL~s~----s~~Vre~AA~aL~nLa~---~sd~~r~~I~e~Ga 559 (2054)
+......+.+||||+.|+.+|+..|.+ .|++..||.+|... ...+-+.+-++|.|.+. ..+.+|.++.+.++
T Consensus 452 EsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NC 531 (2195)
T KOG2122|consen 452 ESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNC 531 (2195)
T ss_pred cchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhH
Confidence 678888999999999999999999986 48899999998543 56788999999999865 46788999999999
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccch
Q 000145 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2054)
Q Consensus 560 I~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI 639 (2054)
+..|+..|++.+-.+..+++.+||||+.. +++ -++.+.+.|++
T Consensus 532 Lq~LLQ~LKS~SLTiVSNaCGTLWNLSAR----------------~p~---------------------DQq~LwD~gAv 574 (2195)
T KOG2122|consen 532 LQTLLQHLKSHSLTIVSNACGTLWNLSAR----------------SPE---------------------DQQMLWDDGAV 574 (2195)
T ss_pred HHHHHHHhhhcceEEeecchhhhhhhhcC----------------CHH---------------------HHHHHHhcccH
Confidence 99999999999999999999999999743 111 13446788999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcC
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMR 668 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~ 668 (2054)
..|..++++.+..+-+.++.+|.||....
T Consensus 575 ~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 575 PMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 99999999999999999999999998754
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.7e-11 Score=140.15 Aligned_cols=492 Identities=14% Similarity=0.075 Sum_probs=325.5
Q ss_pred HHHHHHHHHhcCCCH--HHHHHHHHHHHH-HHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchh
Q 000145 41 VAKFLEQLHANMSSP--QERELITMRILT-IAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDL 117 (2054)
Q Consensus 41 V~qlIe~L~~ssss~--~ere~AL~~L~~-La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~ 117 (2054)
+-..+++|+..+-++ ..-+.++.++.. ++..+.+.-.-+. .||+ ...+..+.......+...++.+--
T Consensus 5 lsD~lkKLKiTaVd~teds~~~C~~~~~qa~a~~nt~t~ek~~--~~~i-------~~~~~tv~~~qssC~A~~sk~ev~ 75 (604)
T KOG4500|consen 5 LSDTLKKLKITAVDKTEDSLEGCLDCLLQALAQNNTETSEKIQ--ASGI-------MTASDTVYLFQSSCLADRSKNEVE 75 (604)
T ss_pred HHHHHHHhhccccCcccchhHHHHHHHHHhHhhhChhhHHHHH--hcce-------eeccchhhhhhHHHHHHHhhhHHH
Confidence 445667776543332 123444444432 3333322222222 2333 233455666677777777777766
Q ss_pred HHHHHh----cCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCC----hh
Q 000145 118 RLKVLL----GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQD----NV 189 (2054)
Q Consensus 118 r~~v~~----~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d----~~ 189 (2054)
|..+.. +|++..|.+..+++|.++-..+.++|+|+|.. ++++|..+.+.||-..+++.|+.-...+ ..
T Consensus 76 r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCyd----n~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~ 151 (604)
T KOG4500|consen 76 RSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYD----NNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEE 151 (604)
T ss_pred HHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhcc----CchhHHHHHhcCCceehHhhhccccccCCccHHH
Confidence 666654 46777888888888999999999999999984 5789999999999888888887432111 23
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHHHHHHHHHHHHHh-hcCCCcchhcccchHHHHHHH
Q 000145 190 VQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLML-AFGDSIPTVIDSGAVKALVQL 266 (2054)
Q Consensus 190 V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq~~A~~aL~nLs~-~~~~~r~~i~~sGaL~~LL~L 266 (2054)
...-+.+.|.|..-+.++-+..+.+.|.++.|...+.-+ +.+..+.......+|.. ..+...+...+....-.++++
T Consensus 152 ~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~l 231 (604)
T KOG4500|consen 152 YSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQL 231 (604)
T ss_pred HHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHH
Confidence 455677889999998888889999999999999888654 33333444333334331 111112333456677788888
Q ss_pred hccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHH
Q 000145 267 VGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVV 346 (2054)
Q Consensus 267 L~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~ 346 (2054)
+.+.-.+..+++...++...+. |+..+-.+.+.|-+..+++++......... +-...-+-.++.
T Consensus 232 l~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k--------~d~~~l~k~~~e------- 295 (604)
T KOG4500|consen 232 LPSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKK--------TDMLNLFKRIAE------- 295 (604)
T ss_pred HHHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccch--------HHHHHHHHhhhh-------
Confidence 8766667788888888888888 588888889999999999988662211000 001100001110
Q ss_pred HhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhH
Q 000145 347 YLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQ 426 (2054)
Q Consensus 347 ~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~ 426 (2054)
...-+.. +.++....+....+-+.+..++++.+.+ .+....-+++|++++++++.
T Consensus 296 -----------------l~vlllt-------GDeSMq~L~~~p~~l~~~~sw~~S~d~~-l~t~g~LaigNfaR~D~~ci 350 (604)
T KOG4500|consen 296 -----------------LDVLLLT-------GDESMQKLHADPQFLDFLESWFRSDDSN-LITMGSLAIGNFARRDDICI 350 (604)
T ss_pred -----------------Hhhhhhc-------CchHHHHHhcCcHHHHHHHHHhcCCchh-HHHHHHHHHHhhhccchHHH
Confidence 0000000 1111122233333557788899988776 67888889999999999999
Q ss_pred HHhhcchHHHHHHHhcc-----CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHH
Q 000145 427 WVSHAEAKKVLIGLITM-----ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAIL 501 (2054)
Q Consensus 427 ~L~~~g~I~~LI~LL~s-----sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nL 501 (2054)
.+++.+.+..|++++.. ++-+.|..+..+|+|+... ..++..+...|..+.++.+++...+.++..-...++-+
T Consensus 351 ~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~ 429 (604)
T KOG4500|consen 351 QLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMI 429 (604)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 99999999999998854 4566788888999999988 67888888899999999999999988888777777666
Q ss_pred hhhccchhhHHHh-hCCCchHhhhhhcCCH-HHHHHHHHHHHHHhcCCh--hHHHHHHHcCChHHHHHhhccCChhHHHH
Q 000145 502 TEQVDDSKWAITA-AGGIPPLVQLLEAGSQ-KAREVAAHVLWILCCHSE--DIRACVESAGAVPAFLWLLKSGGPKGQDA 577 (2054)
Q Consensus 502 s~~s~e~r~~I~~-aGaIp~LV~LL~s~s~-~Vre~AA~aL~nLa~~sd--~~r~~I~e~GaI~aLV~LLkS~~~evq~~ 577 (2054)
...-+...-.+.+ ..-+..|+..-+++|- .+-..+-+.+..|..|+. ++-..+.+.|+|..++.++.+..-..|..
T Consensus 430 ~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnE 509 (604)
T KOG4500|consen 430 RDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNE 509 (604)
T ss_pred HhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHH
Confidence 5421111111111 1234455555566654 366777788888877632 33445667899999999998888888888
Q ss_pred HHHHHHHHHH
Q 000145 578 SAMALTKLIR 587 (2054)
Q Consensus 578 AA~AL~nLs~ 587 (2054)
+.-+|..+..
T Consensus 510 alVal~~~~~ 519 (604)
T KOG4500|consen 510 ALVALLSTES 519 (604)
T ss_pred HHHHHHHHHH
Confidence 8888776653
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.5e-13 Score=157.47 Aligned_cols=251 Identities=14% Similarity=0.126 Sum_probs=206.1
Q ss_pred cHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
.++.|..++.+.+..+|..++.+|..+.. ...++.+..++++.++.+|..++++|+.|......
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence 46789999999999999999999998865 23567788889999999999999999999753211
Q ss_pred HHcCChHHHHHh-hccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 555 ESAGAVPAFLWL-LKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 555 ~e~GaI~aLV~L-LkS~~~evq~~AA~AL~nLs~~~---e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
...+++.|..+ +++.++.++..++.+|+++.... ....++.+...+.++++.|+..+..+|+.+
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------- 155 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----------- 155 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc-----------
Confidence 12456777766 68889999999999999996432 234567788888899999999999998754
Q ss_pred hhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 000145 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2054)
Q Consensus 631 ~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~ 710 (2054)
....+++.|+.+++++++.+|..|+.+|.++... ...+++.|+.++.+.++.+|..|+++|+++..
T Consensus 156 ---~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-- 221 (280)
T PRK09687 156 ---NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-- 221 (280)
T ss_pred ---CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--
Confidence 2234699999999999999999999999998432 13567889999999999999999999999753
Q ss_pred CcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHH
Q 000145 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA-EGTSEGKKNASRAL 789 (2054)
Q Consensus 711 ~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~-s~~~evr~~Aa~AL 789 (2054)
+ .++++|++.|.+++ ++..++.+|+++. .+.++|.|.+++. +.|+.++.+|.++|
T Consensus 222 ~------------~av~~Li~~L~~~~--~~~~a~~ALg~ig----------~~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 222 K------------RVLSVLIKELKKGT--VGDLIIEAAGELG----------DKTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred h------------hHHHHHHHHHcCCc--hHHHHHHHHHhcC----------CHhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 2 38999999999876 6778999999876 3468999999996 77999999999998
Q ss_pred HH
Q 000145 790 HQ 791 (2054)
Q Consensus 790 ~n 791 (2054)
..
T Consensus 278 ~~ 279 (280)
T PRK09687 278 KR 279 (280)
T ss_pred hc
Confidence 64
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-12 Score=152.70 Aligned_cols=253 Identities=18% Similarity=0.098 Sum_probs=204.1
Q ss_pred CCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--chhh
Q 000145 516 GGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--DSAT 593 (2054)
Q Consensus 516 GaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--e~~~ 593 (2054)
-.++.|..+|.+.+..+|..++.+|..+.. ..+++.+..+++++++.+|..++++|+.+.... ....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a 91 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNV 91 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHH
Confidence 467899999999999999999999998863 346777888999999999999999999996532 2357
Q ss_pred HHHHHHH-hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhh
Q 000145 594 INQLLAL-LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC 672 (2054)
Q Consensus 594 Ip~Lv~L-L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r 672 (2054)
++.|..+ +++.++.|+..+..+||.+....... ...++..+...+.++++.+|..++.+|.++..
T Consensus 92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--------~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~------ 157 (280)
T PRK09687 92 FNILNNLALEDKSACVRASAINATGHRCKKNPLY--------SPKIVEQSQITAFDKSTNVRFAVAFALSVIND------ 157 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--------chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC------
Confidence 8888887 67788899999999999874321111 12246777788888999999999999987754
Q ss_pred hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 673 GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 673 ~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
..+++.|+.+|++.++.+|..|+.+|+++....+ .++++|+.+|.+.+.+|+..|+.+|+.+.
T Consensus 158 -----~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~------------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 -----EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP------------DIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred -----HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH------------HHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 5578999999999999999999999999843212 37888999999999999999999999764
Q ss_pred CChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHH
Q 000145 753 SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADA 832 (2054)
Q Consensus 753 ~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~A 832 (2054)
...+++.|++.+.+++ ++..|+.+|++++.. .+++.|..++... .+...+..|
T Consensus 221 ----------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~--------------~a~p~L~~l~~~~-~d~~v~~~a 273 (280)
T PRK09687 221 ----------DKRVLSVLIKELKKGT--VGDLIIEAAGELGDK--------------TLLPVLDTLLYKF-DDNEIITKA 273 (280)
T ss_pred ----------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH--------------hHHHHHHHHHhhC-CChhHHHHH
Confidence 4468999999998876 677899999999873 3778899998622 355567777
Q ss_pred HHHHH
Q 000145 833 LEVVA 837 (2054)
Q Consensus 833 L~ALa 837 (2054)
.+++.
T Consensus 274 ~~a~~ 278 (280)
T PRK09687 274 IDKLK 278 (280)
T ss_pred HHHHh
Confidence 77764
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-11 Score=167.71 Aligned_cols=276 Identities=20% Similarity=0.170 Sum_probs=226.1
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhH
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~ 511 (2054)
..++.|+..|.+.++.++..|+..|..+.. .+.++.|++++++++..+|..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~------ 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL------ 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc------
Confidence 456789999999999999999999988753 246789999999999999999999998885411
Q ss_pred HHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhch
Q 000145 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2054)
Q Consensus 512 I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~ 591 (2054)
...+.|...|.++++.+|..++..|..+.. +....|+..+++.++.+|..++.+|..+.
T Consensus 684 ----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~------------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~----- 742 (897)
T PRK13800 684 ----PPAPALRDHLGSPDPVVRAAALDVLRALRA------------GDAALFAAALGDPDHRVRIEAVRALVSVD----- 742 (897)
T ss_pred ----CchHHHHHHhcCCCHHHHHHHHHHHHhhcc------------CCHHHHHHHhcCCCHHHHHHHHHHHhccc-----
Confidence 123577788999999999999999998753 22346778899999999999999999862
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhh
Q 000145 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2054)
Q Consensus 592 ~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~ 671 (2054)
..+.|..++.++++.|+..+..+|+.+... ....++.|..+++++++.+|..|+.+|.++...
T Consensus 743 -~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~------------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---- 805 (897)
T PRK13800 743 -DVESVAGAATDENREVRIAVAKGLATLGAG------------GAPAGDAVRALTGDPDPLVRAAALAALAELGCP---- 805 (897)
T ss_pred -CcHHHHHHhcCCCHHHHHHHHHHHHHhccc------------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc----
Confidence 245688899999999999999998875321 122478899999999999999999999998641
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000145 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2054)
Q Consensus 672 r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NL 751 (2054)
...+..+...|.+.++.+|..|+.+|+.+.. + ..+++|+.+|++++..||..|+.+|+.+
T Consensus 806 ------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--~------------~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 806 ------PDDVAAATAALRASAWQVRQGAARALAGAAA--D------------VAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred ------chhHHHHHHHhcCCChHHHHHHHHHHHhccc--c------------chHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 2234678899999999999999999998853 2 2679999999999999999999999987
Q ss_pred hCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000145 752 LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791 (2054)
Q Consensus 752 a~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~n 791 (2054)
..++. ..+.|...+.+.++.+|..|.++|..
T Consensus 866 ~~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 866 PGDPA---------ARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred CCCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 43333 56778889999999999999999853
|
|
| >KOG4199 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-11 Score=139.17 Aligned_cols=324 Identities=14% Similarity=0.134 Sum_probs=243.7
Q ss_pred HcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHHHHHHHHHHHHHhh
Q 000145 169 TEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLA 246 (2054)
Q Consensus 169 ~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq~~A~~aL~nLs~~ 246 (2054)
+.|..+.++.++...+..+..+...++.+|..+.... ..++++-|+..++.+|... +.++.......+..-|..
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 4455665555443222234567888888888887654 4567888999999999754 466777777888888888
Q ss_pred cCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHH----------HHHHhcCCHHHHHHhhcCCchh
Q 000145 247 FGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAK----------KAVVAADGVPVLIGAIVAPSKE 316 (2054)
Q Consensus 247 ~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~R----------k~I~eaggL~~LIeLL~s~s~e 316 (2054)
++.+|+.+++.++++.+...+.......+.+...++++.+..+ ++.| +.+...|++..|++
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~E-------- 248 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTE-------- 248 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHH--------
Confidence 8999999999999999998885322224556677888888774 3222 12222222222222
Q ss_pred hhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHH
Q 000145 317 CMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILV 396 (2054)
Q Consensus 317 ~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv 396 (2054)
T Consensus 249 -------------------------------------------------------------------------------- 248 (461)
T KOG4199|consen 249 -------------------------------------------------------------------------------- 248 (461)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHH----HHHHHHHHHHhcccCccchhhhhc
Q 000145 397 MLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADV----REYLILSLTKLCRREVGIWEAIGK 472 (2054)
Q Consensus 397 ~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~ev----q~~Aa~AL~~Ls~~s~e~r~~Ive 472 (2054)
.++..-++.+-.....+|..++-+.++++.+.+.||+..+++++.+.+.+. -+.++..|+.++.+ ++++..|++
T Consensus 249 -al~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~ 326 (461)
T KOG4199|consen 249 -ALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVE 326 (461)
T ss_pred -HHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 111111112445566678888888889999999999999999998855443 24556777788877 799999999
Q ss_pred cccHHHHHhhhc--CCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCCh
Q 000145 473 REGIQLLISLLG--LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSE 548 (2054)
Q Consensus 473 ~ggIp~LV~LL~--s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd 548 (2054)
.||.+.++.++. ++++.+...++.+++.|+..++++...+++.|+-...++.++.. ...+|+++++.++|+..++.
T Consensus 327 ~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~ 406 (461)
T KOG4199|consen 327 KGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSA 406 (461)
T ss_pred hcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999764 56788899999999999998999999999999999999999866 56789999999999999888
Q ss_pred hHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 000145 549 DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 549 ~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
+++..+. ..+++.|+...++..+.+...+-.+|..|..+
T Consensus 407 ~~~~~~l-~~GiE~Li~~A~~~h~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 407 ENRTILL-ANGIEKLIRTAKANHETCEAAAKAALRDLGCD 445 (461)
T ss_pred hccchHH-hccHHHHHHHHHhcCccHHHHHHHHHHhcCcc
Confidence 8888877 45689999999998888888888888888655
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-07 Score=123.68 Aligned_cols=743 Identities=14% Similarity=0.142 Sum_probs=401.4
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCC-CCCChh
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGG-LSDDHV 162 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~-~nk~~~ 162 (2054)
.+..|+.-|.+++.+++..|-+.+.++...+. ..+.|..++.. +|+++|.-|+-.+..+...- .+-+.+
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 45667777788888999999999988754332 66888888887 79999999999998887520 001222
Q ss_pred HHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCc-hhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHH
Q 000145 163 GMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDG-YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2054)
Q Consensus 163 ~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~-r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~ 241 (2054)
.+.. +-..|+..+.... .+.++....+++..++++.-. .|.. .++.|.+...++++..|+.|..+|+
T Consensus 76 ~~~s-----iks~lL~~~~~E~--~~~vr~k~~dviAeia~~~l~e~WPe-----ll~~L~q~~~S~~~~~rE~al~il~ 143 (1075)
T KOG2171|consen 76 VQQS-----IKSSLLEIIQSET--EPSVRHKLADVIAEIARNDLPEKWPE-----LLQFLFQSTKSPNPSLRESALLILS 143 (1075)
T ss_pred HHHH-----HHHHHHHHHHhcc--chHHHHHHHHHHHHHHHhccccchHH-----HHHHHHHHhcCCCcchhHHHHHHHH
Confidence 2333 3445666655443 356888888899888886522 3332 4677788888899999999999999
Q ss_pred HHHhhcCCCcchhcccchHHHHHHHhc---cCCChhHHHHHHHHHHHHhhccH---HHHHHHHhcCCHHHHHHhhcC---
Q 000145 242 RLMLAFGDSIPTVIDSGAVKALVQLVG---QNNDISVRASAADALEALSSKSI---KAKKAVVAADGVPVLIGAIVA--- 312 (2054)
Q Consensus 242 nLs~~~~~~r~~i~~sGaL~~LL~LL~---s~~d~~Vr~~Aa~aL~nLs~~s~---e~Rk~I~eaggL~~LIeLL~s--- 312 (2054)
.+....+.. ..+.++.+..++. .+.+..+|..+..++..++..++ ..++.+. .-+|.++..+..
T Consensus 144 s~~~~~~~~-----~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~ 216 (1075)
T KOG2171|consen 144 SLPETFGNT-----LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQ 216 (1075)
T ss_pred hhhhhhccc-----cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhh
Confidence 988433221 1233444444443 13444599999999998877543 3333332 344555554432
Q ss_pred -CchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHH-Hhhh-------hcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCC
Q 000145 313 -PSKECMQGQRGQALQGHATRALANIYGGMPALVV-YLGE-------LSQSPRLAAPVADIIGALAYALMVFEQKSGVDD 383 (2054)
Q Consensus 313 -~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~-~L~e-------lL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~ 383 (2054)
.+.+ .-..++.+|..+.+..+.++. .+.+ .-++......++...-.+....+-+........
T Consensus 217 ~~d~~---------~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~ 287 (1075)
T KOG2171|consen 217 DGDDD---------AAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKL 287 (1075)
T ss_pred ccchH---------HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhc
Confidence 2211 123356666666655544321 1111 112222211111111111110000000000000
Q ss_pred cccchhhHHHHHHHHcCCCChh---------------hHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHH
Q 000145 384 EPFDARQIEDILVMLLKPHDNK---------------LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADV 448 (2054)
Q Consensus 384 ~~~~~~gIe~~Lv~LLk~~~~e---------------~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~ev 448 (2054)
..+-+ .+...+..++....++ .....+.+++-.++.+-. ....-.-.++.+-.++++.+...
T Consensus 288 ~~~~~-~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~--g~~v~p~~~~~l~~~l~S~~w~~ 364 (1075)
T KOG2171|consen 288 ALLGH-TLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG--GKQVLPPLFEALEAMLQSTEWKE 364 (1075)
T ss_pred hhhhc-cHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC--hhhehHHHHHHHHHHhcCCCHHH
Confidence 11111 1112233332221111 122233333333322110 00111123455677889999999
Q ss_pred HHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC
Q 000145 449 REYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG 528 (2054)
Q Consensus 449 q~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~ 528 (2054)
+..+..+|..++.+..+.-.... ...++..+..++++++.||..|+.+++.++..-...-..-.....++.|+..+.+.
T Consensus 365 R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~ 443 (1075)
T KOG2171|consen 365 RHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST 443 (1075)
T ss_pred HHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc
Confidence 99999999998876443322211 23566677888999999999999999999874333323333445667888888776
Q ss_pred -CHHHHHHHHHHHHHHhcCChhHHHHHHH--cCChH-HHHHhhccCChhHHHHHHHHHHHHHHhhc-------hhhHHHH
Q 000145 529 -SQKAREVAAHVLWILCCHSEDIRACVES--AGAVP-AFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQL 597 (2054)
Q Consensus 529 -s~~Vre~AA~aL~nLa~~sd~~r~~I~e--~GaI~-aLV~LLkS~~~evq~~AA~AL~nLs~~~e-------~~~Ip~L 597 (2054)
++.++..|+.++-|++.+.+. ..+.- .+.+. .+..++.++.+.+|+.++.+++..+...+ ...+|.|
T Consensus 444 ~~~rV~ahAa~al~nf~E~~~~--~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L 521 (1075)
T KOG2171|consen 444 QNVRVQAHAAAALVNFSEECDK--SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLL 521 (1075)
T ss_pred CchHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 789999999999999764332 11110 23333 33346678899999999999999987754 2456777
Q ss_pred HHHhcCCC----cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhc-------cCCHHHHHHHHHHHHHHhh
Q 000145 598 LALLLGDS----PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN-------SSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 598 v~LL~~~~----~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLk-------s~s~evre~Aa~ALanLas 666 (2054)
.+.|...+ ...+..+.+|++.+..-.....+.. ....+++++- +.++..+..-....+++|.
T Consensus 522 ~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~-------~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ 594 (1075)
T KOG2171|consen 522 KNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLP-------LAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCR 594 (1075)
T ss_pred HHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhH-------hHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHH
Confidence 77777544 2355566778777654322221111 1122222221 1133334444444444433
Q ss_pred cC-------------------------------------------------h---hhhh-----------------hhhh
Q 000145 667 MR-------------------------------------------------Q---DICG-----------------SLAT 677 (2054)
Q Consensus 667 ~~-------------------------------------------------~---e~r~-----------------~Iv~ 677 (2054)
.- . .++. ...+
T Consensus 595 ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk 674 (1075)
T KOG2171|consen 595 ILGDDFAPFLPVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELK 674 (1075)
T ss_pred HhchhhHhHHHHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhh
Confidence 10 0 0000 0011
Q ss_pred CCC-------HHHHHH-HhccCCHHHHHHHHHHHHHhhCCCCc----ccchhHHHHhcCChhhHHhhhhc-CCHHHHHHH
Q 000145 678 DEI-------VNPCMR-LLTSNTQMVATQSARALGALSRPTKT----KTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETA 744 (2054)
Q Consensus 678 ~g~-------V~~Lv~-LL~dgs~~vr~~AA~AL~nLs~s~~~----~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~A 744 (2054)
.+. ++..+. +.-.-+..+|+.|+.++..+..+... .+. ...-.-.++.+.++.-+.. .+.++....
T Consensus 675 ~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~-~l~~l~~~~~~~l~~~l~~E~e~~vl~~v 753 (1075)
T KOG2171|consen 675 EAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPE-YLKQLWEAIRPALIKALEEEPETEVLSEI 753 (1075)
T ss_pred hhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChH-HHHHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence 111 121111 22235678898888888777651110 001 1111223466666666666 445565566
Q ss_pred HHHHHHhh-------CChHHHHHHHh---cCcHHHHH-------------------HHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 745 VAALANLL-------SDPDIAAEVLL---EDVVSALT-------------------RVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 745 l~AL~NLa-------~~~e~r~~Iv~---~g~I~~LV-------------------~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
+..+++.- -+++..+.+.. ........ ..+.+.+..+...+...+..+...
T Consensus 754 l~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~ 833 (1075)
T KOG2171|consen 754 LESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKA 833 (1075)
T ss_pred HHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 66665552 12222222111 00111111 111133444666777777777764
Q ss_pred CCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCCh
Q 000145 796 FPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPP 875 (2054)
Q Consensus 796 ~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~ 875 (2054)
.. ..+... -.+..+.++.++.+.+.-. +.=|+..++-+.. .+.... + ......++.+..+..+..|
T Consensus 834 ~k--~~f~p~--f~~~~p~iv~~l~~~~~~~--r~~av~~~~d~ie---~~~~a~--~---~~~~~~~p~~~~~~~d~~p 899 (1075)
T KOG2171|consen 834 LK--GSFLPF--FENFLPLIVKLLKSKKTVA--RQWAVCIFDDLIE---GCGEAS--A---KYKERFLPLVLEALQDSDP 899 (1075)
T ss_pred cc--ccccHH--HHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHH---hccccc--c---hHHHHHHHHHHHHcCCCCH
Confidence 31 111111 1456777888886544322 5555555555442 111111 0 0123458889999999999
Q ss_pred hHHHHHHHHHHHhhccC
Q 000145 876 PLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 876 ~vq~~Ai~iL~~L~~~~ 892 (2054)
++|+.|++.+.-++...
T Consensus 900 EVRqaAsYGiGvlaq~~ 916 (1075)
T KOG2171|consen 900 EVRQAAAYGMGVLAQFG 916 (1075)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999877643
|
|
| >KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.4e-10 Score=133.89 Aligned_cols=427 Identities=15% Similarity=0.109 Sum_probs=300.8
Q ss_pred HHHHHHHHHHHhhcChhhhHHHh----hcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhh
Q 000145 407 VQERVLEAMASLYGNIFLSQWVS----HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~----~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~L 482 (2054)
++.....++.....++--++.+. ..+.++.|.+...+.+.++.....++|+|+|.++.++|..+.+.||-..+++.
T Consensus 58 v~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~ 137 (604)
T KOG4500|consen 58 VYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDV 137 (604)
T ss_pred hhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhh
Confidence 66777777777765554444443 34567788888888889999999999999999999999999999996666665
Q ss_pred hc----CCCh---hhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHhcC-ChhHHH
Q 000145 483 LG----LSSE---QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCH-SEDIRA 552 (2054)
Q Consensus 483 L~----s~d~---~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~-sd~~r~ 552 (2054)
++ .+++ +.-.-+...|.|-...+.+.+..+.+.|.++.|..++.-+ +...-+.......||..- .+....
T Consensus 138 L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~ 217 (604)
T KOG4500|consen 138 LKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYP 217 (604)
T ss_pred hccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhh
Confidence 54 2232 3444556677887777788899999999999999887654 444445555444554321 112233
Q ss_pred HHHHcCChHHHHHhhcc-CChhHHHHHHHHHHHHHHhh-------chhhHHHHHHHhcC-CCcchHHHHHHHHHHHH---
Q 000145 553 CVESAGAVPAFLWLLKS-GGPKGQDASAMALTKLIRAA-------DSATINQLLALLLG-DSPSSKAHVIKVLGHVL--- 620 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLkS-~~~evq~~AA~AL~nLs~~~-------e~~~Ip~Lv~LL~~-~~~~V~~~a~~AL~~La--- 620 (2054)
...+......+++++.+ .+++..+..-..|...+.++ +.+....+..+++. .+...+.....-+...+
T Consensus 218 ~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~ 297 (604)
T KOG4500|consen 218 FCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELD 297 (604)
T ss_pred hhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHh
Confidence 33445556667777754 45677777777777776653 34556666666653 22221221111111111
Q ss_pred -hhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhc-----cCCHH
Q 000145 621 -TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT-----SNTQM 694 (2054)
Q Consensus 621 -~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~-----dgs~~ 694 (2054)
......|..+....+...++-++..+.+.|.+....++-+++|++. +.+++..+++.+.+..|+.++. +|+.+
T Consensus 298 vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~ 376 (604)
T KOG4500|consen 298 VLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVE 376 (604)
T ss_pred hhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccch
Confidence 1122333444444445578999999999999999999999999998 8899999999999999999984 46778
Q ss_pred HHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChH-HHHHHH-hcCcHHHHHH
Q 000145 695 VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD-IAAEVL-LEDVVSALTR 772 (2054)
Q Consensus 695 vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e-~r~~Iv-~~g~I~~LV~ 772 (2054)
.+..+..||+|+.. |. .+|..+..+|++..++..++...+.+...-.+.|.-+....+ ...++. ....+..|++
T Consensus 377 ~qhA~lsALRnl~I--Pv--~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~ 452 (604)
T KOG4500|consen 377 RQHACLSALRNLMI--PV--SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD 452 (604)
T ss_pred hHHHHHHHHHhccc--cC--CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH
Confidence 88899999999987 76 788899999999999999999999998888888887765444 444444 4567888999
Q ss_pred HHcCCCHH-HHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 773 VLAEGTSE-GKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 773 LL~s~~~e-vr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
.-.+.|-. +--..-+.|.-+..++.. .++.-.+.+.|+++.+|..+.... ..-+.+|+-+|..++.
T Consensus 453 Wsks~D~aGv~gESnRll~~lIkHs~~-kdv~~tvpksg~ik~~Vsm~t~~h--i~mqnEalVal~~~~~ 519 (604)
T KOG4500|consen 453 WSKSPDFAGVAGESNRLLLGLIKHSKY-KDVILTVPKSGGIKEKVSMFTKNH--INMQNEALVALLSTES 519 (604)
T ss_pred hhhCCccchhhhhhhHHHHHHHHhhHh-hhhHhhccccccHHHHHHHHHHhh--HHHhHHHHHHHHHHHH
Confidence 88877644 566667777777776422 345555666788999999997544 3347889988887764
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-11 Score=161.87 Aligned_cols=276 Identities=22% Similarity=0.142 Sum_probs=221.9
Q ss_pred ccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
..++.|++.|+++++.+|..|+..|..+.. .+.++.|+++|+++++.+|..|+.+|..+...
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~------- 682 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEV------- 682 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------
Confidence 457889999999999999999999988764 34678899999999999999999999888431
Q ss_pred HHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000145 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2054)
Q Consensus 554 I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l 633 (2054)
....+.|...|++.++.+|..++.+|..+... ....+++.|.+.++.++..+..+|+.+
T Consensus 683 ---~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~----~~~~l~~~L~D~d~~VR~~Av~aL~~~-------------- 741 (897)
T PRK13800 683 ---LPPAPALRDHLGSPDPVVRAAALDVLRALRAG----DAALFAAALGDPDHRVRIEAVRALVSV-------------- 741 (897)
T ss_pred ---cCchHHHHHHhcCCCHHHHHHHHHHHHhhccC----CHHHHHHHhcCCCHHHHHHHHHHHhcc--------------
Confidence 12346778888999999999999999887522 245788899999999999888888753
Q ss_pred hcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc
Q 000145 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
+..+.|..++.++++++|..++.+|..+... ....++.|..++++.++.+|..|+.+|+++.. +.
T Consensus 742 ---~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~--~~- 806 (897)
T PRK13800 742 ---DDVESVAGAATDENREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPLVRAAALAALAELGC--PP- 806 (897)
T ss_pred ---cCcHHHHHHhcCCCHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC--cc-
Confidence 1235577889999999999999999998652 12347889999999999999999999999864 21
Q ss_pred cchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 000145 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2054)
Q Consensus 714 d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~ 793 (2054)
..+..++..|.+.++.||..|+.+|+.+. .+..++.|+.++.+.+..+|..|+++|.++.
T Consensus 807 ----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 807 ----------DDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred ----------hhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 13466888999999999999999999764 3456799999999999999999999999873
Q ss_pred hcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHH
Q 000145 794 KHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVAL 838 (2054)
Q Consensus 794 ~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~ 838 (2054)
.+ ......|...+++. +...+.+|..+|..
T Consensus 867 ~~-------------~~a~~~L~~al~D~--d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 867 GD-------------PAARDALTTALTDS--DADVRAYARRALAH 896 (897)
T ss_pred CC-------------HHHHHHHHHHHhCC--CHHHHHHHHHHHhh
Confidence 21 23557777888644 44568888888763
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.4e-09 Score=134.51 Aligned_cols=436 Identities=15% Similarity=0.139 Sum_probs=302.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHH
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLK 120 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~ 120 (2054)
....++.|..+ ..+..++..+..-....+.... .--+.+...|.+.+.+....++.+|..+-........
T Consensus 5 ~~~~l~~l~~~----~~~~~~L~~l~~~~~~~~~l~~------~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l 74 (503)
T PF10508_consen 5 INELLEELSSK----AERLEALPELKTELSSSPFLER------LPEPVLFDCLNTSNREQVELICDILKRLLSALSPDSL 74 (503)
T ss_pred HHHHHHHHhcc----cchHHHHHHHHHHHhhhhHHHh------chHHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH
Confidence 45566666544 2244555555554333322222 2234477888888888888999999877554433322
Q ss_pred HHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q 000145 121 VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200 (2054)
Q Consensus 121 v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~n 200 (2054)
..+..+.|...|.++++.+|..+++.|.++..+ +....+.+.+.++++.++..+..++ ..+...|..+|.+
T Consensus 75 --~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~----~~~~~~~~~~~~l~~~i~~~L~~~d---~~Va~~A~~~L~~ 145 (503)
T PF10508_consen 75 --LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARH----SEGAAQLLVDNELLPLIIQCLRDPD---LSVAKAAIKALKK 145 (503)
T ss_pred --HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC----CHHHHHHhcCccHHHHHHHHHcCCc---HHHHHHHHHHHHH
Confidence 346678888999999999999999999999963 3344677788999999999997654 5689999999999
Q ss_pred HhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHH
Q 000145 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2054)
Q Consensus 201 L~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa 280 (2054)
++..+.+. ..+...+++..|..++...++.+|..+..++.+++..+++....+.+.|.++.++..++. +|.-++..+.
T Consensus 146 l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnal 223 (503)
T PF10508_consen 146 LASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNAL 223 (503)
T ss_pred HhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHH
Confidence 99977655 567788889999999998888999999999999998888888888899999999999994 8889999999
Q ss_pred HHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhh
Q 000145 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2054)
Q Consensus 281 ~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~ 360 (2054)
+++..++. .+...+.+.+.|.++.|.+++.+...+. . +..+
T Consensus 224 ell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp-~--------------~~~~----------------------- 264 (503)
T PF10508_consen 224 ELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDP-R--------------LSSL----------------------- 264 (503)
T ss_pred HHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCC-c--------------ccch-----------------------
Confidence 99999999 5888899999999999999887654321 0 0000
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcC--hhhhHHHhhcchHHHHH
Q 000145 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN--IFLSQWVSHAEAKKVLI 438 (2054)
Q Consensus 361 iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n--~~~~~~L~~~g~I~~LI 438 (2054)
+-. |.. ...++++.. ..+.. .-...+..+.
T Consensus 265 -------------------------~l~-g~~--------------------~f~g~la~~~~~~v~~--~~p~~~~~l~ 296 (503)
T PF10508_consen 265 -------------------------LLP-GRM--------------------KFFGNLARVSPQEVLE--LYPAFLERLF 296 (503)
T ss_pred -------------------------hhh-hHH--------------------HHHHHHHhcChHHHHH--HHHHHHHHHH
Confidence 000 000 011111110 00000 0012345566
Q ss_pred HHhccCCHHHHHHHHHHHHHhcccCccchhhh-hccc-c----HHHHHhhhcCCChhhhHHHHHHHHHHhhhccc---h-
Q 000145 439 GLITMATADVREYLILSLTKLCRREVGIWEAI-GKRE-G----IQLLISLLGLSSEQHQEYAVQLIAILTEQVDD---S- 508 (2054)
Q Consensus 439 ~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~I-ve~g-g----Ip~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e---~- 508 (2054)
.++.+.+...+..|..+|+.++.. .+.+..+ ...+ . +..+-...+++..++|..++.+|.++-....+ +
T Consensus 297 ~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~ 375 (503)
T PF10508_consen 297 SMLESQDPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDND 375 (503)
T ss_pred HHhCCCChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHH
Confidence 788889999999999999999876 4455555 3322 2 33344455677788999999999999432221 1
Q ss_pred ----hhHHH---hhCCCc-hHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh---hHHHH
Q 000145 509 ----KWAIT---AAGGIP-PLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP---KGQDA 577 (2054)
Q Consensus 509 ----r~~I~---~aGaIp-~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~---evq~~ 577 (2054)
..... ..+... .+..+++.+-+++|..+.+.|..|+.+.-..+.+....|.++-|+.--...++ +.++.
T Consensus 376 i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ 455 (503)
T PF10508_consen 376 ILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYD 455 (503)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHH
Confidence 11112 223333 56677888889999999999999998776677776667766666543333333 45666
Q ss_pred HHHHHHHH
Q 000145 578 SAMALTKL 585 (2054)
Q Consensus 578 AA~AL~nL 585 (2054)
.+.+|.+.
T Consensus 456 ii~~l~~~ 463 (503)
T PF10508_consen 456 IIKALAKS 463 (503)
T ss_pred HHHHHHhc
Confidence 66666544
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-09 Score=133.71 Aligned_cols=390 Identities=18% Similarity=0.169 Sum_probs=280.5
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhc
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK 472 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive 472 (2054)
+.+...+...+.+.+ ..++..|..+......... ..+..+.+...+.+.++.++..++..+.++..++......+.+
T Consensus 41 ~~lf~~L~~~~~e~v-~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQV-ELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHH-HHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 335566666555433 4555666666543332222 3456688899999999999999999999998876666677778
Q ss_pred cccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHH
Q 000145 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2054)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~ 552 (2054)
.+.++.++.++.+++..+...|+.+|.+++.+ +.....+...+.+..|..++..++..+|..+..++.+++..+++...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~ 196 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE 196 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88999999999999999999999999999984 55556677888899999999888999999999999999999999999
Q ss_pred HHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh-------chhhHHHHHHHhcCCCcch---HH---HHHHHHHHH
Q 000145 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-------DSATINQLLALLLGDSPSS---KA---HVIKVLGHV 619 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~-------e~~~Ip~Lv~LL~~~~~~V---~~---~a~~AL~~L 619 (2054)
.+.+.|.++.++..++++|.-+|.++...|..++... +.++++.|..++.+...+- .. ......+++
T Consensus 197 ~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~l 276 (503)
T PF10508_consen 197 AVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNL 276 (503)
T ss_pred HHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHH
Confidence 9999999999999999999999999999999998753 3578899999987543322 11 112344444
Q ss_pred HhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhh-hhC-CC----HHHHHHHhccCCH
Q 000145 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL-ATD-EI----VNPCMRLLTSNTQ 693 (2054)
Q Consensus 620 a~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~I-v~~-g~----V~~Lv~LL~dgs~ 693 (2054)
+.. .+..+... -...+..|.+++.+.|...+..|..+++.+++ ..+.+..+ ... +. +..+....+.++.
T Consensus 277 a~~--~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 277 ARV--SPQEVLEL--YPAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred Hhc--ChHHHHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 433 22222211 13456677778888999999999999999998 66666666 443 23 4555555667888
Q ss_pred HHHHHHHHHHHHhhCCCCcccchhH-----H---HHhcCChh-hHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHH-h
Q 000145 694 MVATQSARALGALSRPTKTKTTNKM-----S---YIAEGDVK-PLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVL-L 763 (2054)
Q Consensus 694 ~vr~~AA~AL~nLs~s~~~~d~~r~-----~---I~~~gaV~-~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv-~ 763 (2054)
++|..+..++.++.......+..+. . ....+... .+..+++.+=+++|..+...|..++.++-....+. .
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~ 431 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSS 431 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhC
Confidence 9999999999999652222011111 1 11223333 56677776669999999999999999886666655 4
Q ss_pred cCcHHHHHHHHcCCCHHH---HHHHHHHHHH
Q 000145 764 EDVVSALTRVLAEGTSEG---KKNASRALHQ 791 (2054)
Q Consensus 764 ~g~I~~LV~LL~s~~~ev---r~~Aa~AL~n 791 (2054)
+|.++.+++--.+.+.+. |...+.+|.+
T Consensus 432 ~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 432 PGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred ccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 555666554444445444 4444444443
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.4e-08 Score=126.63 Aligned_cols=504 Identities=17% Similarity=0.161 Sum_probs=317.0
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHH
Q 000145 217 GVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKA 296 (2054)
Q Consensus 217 GI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~ 296 (2054)
.+..|+.-|.+++.+++..|-.++.++... ...++.|..++....++.+|..|+-.++.+..+
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~----------~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~------- 67 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKT----------EPLLPALAHILATSADPQVRQLAAVLLRKLLTK------- 67 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcc----------cchHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-------
Confidence 456677777778888899999998877632 227888888888888999999998888887774
Q ss_pred HHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhh
Q 000145 297 VVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFE 376 (2054)
Q Consensus 297 I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~ 376 (2054)
+. ..=+.+ .|.
T Consensus 68 ~w------------~~l~~e---------~~~------------------------------------------------ 78 (1075)
T KOG2171|consen 68 HW------------SRLSAE---------VQQ------------------------------------------------ 78 (1075)
T ss_pred Hh------------hcCCHH---------HHH------------------------------------------------
Confidence 00 000000 000
Q ss_pred cCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHH
Q 000145 377 QKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSL 456 (2054)
Q Consensus 377 ~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL 456 (2054)
.+...|...+.+...+.+|...+..++.++++.--.+ -.+.++.|++-..+.++..|+.|...|
T Consensus 79 -------------siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~---WPell~~L~q~~~S~~~~~rE~al~il 142 (1075)
T KOG2171|consen 79 -------------SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEK---WPELLQFLFQSTKSPNPSLRESALLIL 142 (1075)
T ss_pred -------------HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccc---hHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence 0000111111111122366666666666654431111 235678888889999999999999988
Q ss_pred HHhcccCccc-hhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHh-hCCCchHhhhh----hcCCH
Q 000145 457 TKLCRREVGI-WEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA-AGGIPPLVQLL----EAGSQ 530 (2054)
Q Consensus 457 ~~Ls~~s~e~-r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~-aGaIp~LV~LL----~s~s~ 530 (2054)
..+...-... +..+ ....+.+.+.+.+++..+|..++.++.......+.++..... ...+|.++..+ ..++.
T Consensus 143 ~s~~~~~~~~~~~~~--~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~ 220 (1075)
T KOG2171|consen 143 SSLPETFGNTLQPHL--DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDD 220 (1075)
T ss_pred HhhhhhhccccchhH--HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccch
Confidence 8876531111 1111 123455666777777779999999999988765533333332 23566666655 45567
Q ss_pred HHHHHHHHHHHHHhcCChh-HHHHHHHcCChHHHHHhhccC--ChhHHHHHHHHHHHHHHhhc----------hhhHHHH
Q 000145 531 KAREVAAHVLWILCCHSED-IRACVESAGAVPAFLWLLKSG--GPKGQDASAMALTKLIRAAD----------SATINQL 597 (2054)
Q Consensus 531 ~Vre~AA~aL~nLa~~sd~-~r~~I~e~GaI~aLV~LLkS~--~~evq~~AA~AL~nLs~~~e----------~~~Ip~L 597 (2054)
+.-..+...|-.|...... .+..+. ..+.....+.++. ++.+|..|...|..++...- ...++.+
T Consensus 221 ~~a~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~ 298 (1075)
T KOG2171|consen 221 DAAKSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVL 298 (1075)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHH
Confidence 6677777888877654332 233332 2344444555553 57899999999988876621 2345666
Q ss_pred HHHhcCCC----------------cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHH
Q 000145 598 LALLLGDS----------------PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVL 661 (2054)
Q Consensus 598 v~LL~~~~----------------~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~AL 661 (2054)
++++.+.. ......+.+++-.++...+.+.. ..-..+.+-.++.+.++.-|..+..+|
T Consensus 299 l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v------~p~~~~~l~~~l~S~~w~~R~AaL~Al 372 (1075)
T KOG2171|consen 299 LAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQV------LPPLFEALEAMLQSTEWKERHAALLAL 372 (1075)
T ss_pred HHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhe------hHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66654211 11345567777777765544322 122466777788999999999999999
Q ss_pred HHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHH
Q 000145 662 ADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDA 740 (2054)
Q Consensus 662 anLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~V 740 (2054)
+.++.+..+.-.. .=..+++..+..|+|.++.||-.|+.|++.++....+ ... .-...-+.+.|+..+.+ .++.|
T Consensus 373 s~i~EGc~~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p--~iq-k~~~e~l~~aL~~~ld~~~~~rV 448 (1075)
T KOG2171|consen 373 SVIAEGCSDVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQP--EIQ-KKHHERLPPALIALLDSTQNVRV 448 (1075)
T ss_pred HHHHcccHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcH--HHH-HHHHHhccHHHHHHhcccCchHH
Confidence 9998875554433 2246788888999999999999999999999984443 222 22333466678888877 56789
Q ss_pred HHHHHHHHHHhhCC-hHHHHHHHhcCcHH-HHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHh
Q 000145 741 AETAVAALANLLSD-PDIAAEVLLEDVVS-ALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDS 818 (2054)
Q Consensus 741 re~Al~AL~NLa~~-~e~r~~Iv~~g~I~-~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~L 818 (2054)
+..|+.+|-|++.. +...-.=.-.+.+. .+..++.++.+.+|+.++.+++..+... ++.+.... ...++.|...
T Consensus 449 ~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA--~~~F~pY~--d~~Mp~L~~~ 524 (1075)
T KOG2171|consen 449 QAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA--QEKFIPYF--DRLMPLLKNF 524 (1075)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH--hhhhHhHH--HHHHHHHHHH
Confidence 99999999999752 21110001123444 4445677889999999999999988653 22333222 3467778888
Q ss_pred hccCC--CCchhHHHHHHHHHHHh
Q 000145 819 LNAMD--MNGTDVADALEVVALLA 840 (2054)
Q Consensus 819 L~sg~--~~~~~~~~AL~ALa~La 840 (2054)
+..++ +....+....+-++.++
T Consensus 525 L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 525 LQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HhCCCchhhHHHHhhHHHHHHHHH
Confidence 87665 33334444445555444
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-07 Score=122.81 Aligned_cols=503 Identities=20% Similarity=0.189 Sum_probs=326.5
Q ss_pred HHHHHccC--CHHHHHHHHH-HHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHH
Q 000145 89 FISILRSG--TPLAKVNVAA-TLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMK 165 (2054)
Q Consensus 89 LV~LLks~--s~evr~~AA~-vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re 165 (2054)
+.+.+.+. +..-+..+.. ++.....+.+.. .+.+.+++++.++|.+.+.-+--++..+... ++. .-
T Consensus 9 l~~~~~~~~~~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~----~~~-~~ 77 (526)
T PF01602_consen 9 LAKILNSFKIDISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHE----DPE-LL 77 (526)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTT----SHH-HH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc----chh-HH
Confidence 44445444 5544544443 344444444332 6789999999999999999999998888862 332 11
Q ss_pred HHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHh
Q 000145 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245 (2054)
Q Consensus 166 ~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~ 245 (2054)
.+ ++..+.+-|.+++ +.++..|+++|.+++. ..+.+. .++.+.+++.++++.+|..|+.++.++..
T Consensus 78 ~l----~~n~l~kdl~~~n---~~~~~lAL~~l~~i~~------~~~~~~-l~~~v~~ll~~~~~~VRk~A~~~l~~i~~ 143 (526)
T PF01602_consen 78 IL----IINSLQKDLNSPN---PYIRGLALRTLSNIRT------PEMAEP-LIPDVIKLLSDPSPYVRKKAALALLKIYR 143 (526)
T ss_dssp HH----HHHHHHHHHCSSS---HHHHHHHHHHHHHH-S------HHHHHH-HHHHHHHHHHSSSHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHhhcCCC---HHHHHHHHhhhhhhcc------cchhhH-HHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 22 5677777777654 6789999999999985 222222 47788899999999999999999999997
Q ss_pred hcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhh
Q 000145 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQA 325 (2054)
Q Consensus 246 ~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~ 325 (2054)
.+++.. ... .++.+..++. +.+..++..|..++..+ ..++.... ..++.++.
T Consensus 144 ~~p~~~---~~~-~~~~l~~lL~-d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~----------------- 195 (526)
T PF01602_consen 144 KDPDLV---EDE-LIPKLKQLLS-DKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIR----------------- 195 (526)
T ss_dssp HCHCCH---HGG-HHHHHHHHTT-HSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHH-----------------
T ss_pred cCHHHH---HHH-HHHHHhhhcc-CCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHH-----------------
Confidence 655422 122 6888889886 57788998888888887 21111110 00111111
Q ss_pred hhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChh
Q 000145 326 LQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405 (2054)
Q Consensus 326 lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e 405 (2054)
.|..++...++
T Consensus 196 --------------------------------------------------------------------~L~~~l~~~~~- 206 (526)
T PF01602_consen 196 --------------------------------------------------------------------ILCQLLSDPDP- 206 (526)
T ss_dssp --------------------------------------------------------------------HHHHHHTCCSH-
T ss_pred --------------------------------------------------------------------Hhhhcccccch-
Confidence 11111111222
Q ss_pred hHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcC
Q 000145 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2054)
Q Consensus 406 ~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s 485 (2054)
..+...+..+..++....... .....++.+..++.+.++.+...++.++..+..... .-...++.|.+++.+
T Consensus 207 ~~q~~il~~l~~~~~~~~~~~--~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s 278 (526)
T PF01602_consen 207 WLQIKILRLLRRYAPMEPEDA--DKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSS 278 (526)
T ss_dssp HHHHHHHHHHTTSTSSSHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcccCChhhh--hHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhc
Confidence 133334344443322111000 003456777778888888899999999888776532 234678899999999
Q ss_pred CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHH
Q 000145 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2054)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV 564 (2054)
+++.+|..++..|..++... ...+. .....+..+. +.+..+|..+...|..++. +.+-.. .++.|.
T Consensus 279 ~~~nvr~~~L~~L~~l~~~~---~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~ 345 (526)
T PF01602_consen 279 SDPNVRYIALDSLSQLAQSN---PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKE-----ILDELL 345 (526)
T ss_dssp SSHHHHHHHHHHHHHHCCHC---HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----HHHHHH
T ss_pred ccchhehhHHHHHHHhhccc---chhhh---hhhhhhheecCCCChhHHHHHHHHHhhccc--ccchhh-----HHHHHH
Confidence 99999999999999998753 12222 2222334455 7799999999999999985 222222 467788
Q ss_pred Hhh-ccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchH
Q 000145 565 WLL-KSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLR 640 (2054)
Q Consensus 565 ~LL-kS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~ 640 (2054)
..+ ...+++.+..++..+..++.... ...++.+++++....+.+...+...+..+....+. .. ...+.
T Consensus 346 ~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~--~~------~~~l~ 417 (526)
T PF01602_consen 346 KYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE--LR------EKILK 417 (526)
T ss_dssp HHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT--TH------HHHHH
T ss_pred HHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh--hh------HHHHH
Confidence 888 44588899999999999987632 34678899999988788877777777777543221 11 12478
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHH
Q 000145 641 SLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMS 719 (2054)
Q Consensus 641 ~LV~LLks-~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~ 719 (2054)
.|+.++.+ .+++.+..++|+++..+...++ .. .-...+..+.+.....++.+|.....++.++....+.. ..+
T Consensus 418 ~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~-~~~-- 491 (526)
T PF01602_consen 418 KLIELLEDISSPEALAAAIWILGEYGELIEN--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPEN-EVQ-- 491 (526)
T ss_dssp HHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCST-THH--
T ss_pred HHHHHHHHhhHHHHHHHHHhhhcccCCcccc--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCch-hhH--
Confidence 88888876 5788999999999998764322 00 11234455566666778889999999999998743320 111
Q ss_pred HHhcCChhhHHhhhh--cCCHHHHHHHHHHHHHh
Q 000145 720 YIAEGDVKPLIKLAK--TSSIDAAETAVAALANL 751 (2054)
Q Consensus 720 I~~~gaV~~Lv~LL~--s~d~~Vre~Al~AL~NL 751 (2054)
......+..+.. +.+.++|..|...+.-|
T Consensus 492 ---~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 492 ---NEILQFLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp ---HHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 125566777777 78999999998887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-08 Score=130.95 Aligned_cols=472 Identities=19% Similarity=0.206 Sum_probs=322.9
Q ss_pred CChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHH
Q 000145 216 GGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKK 295 (2054)
Q Consensus 216 GGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk 295 (2054)
-|...+++++.+.+...+.-+.-++..+...+++. -.-++..+.+=+. ++++.++..|..++.++.. ++..+
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~-----~~l~~n~l~kdl~-~~n~~~~~lAL~~l~~i~~--~~~~~ 113 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL-----LILIINSLQKDLN-SPNPYIRGLALRTLSNIRT--PEMAE 113 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH-----HHHHHHHHHHHHC-SSSHHHHHHHHHHHHHH-S--HHHHH
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH-----HHHHHHHHHHhhc-CCCHHHHHHHHhhhhhhcc--cchhh
Confidence 37888999999888888888877777776544331 1114555566666 4677899999999999875 44444
Q ss_pred HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHh
Q 000145 296 AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVF 375 (2054)
Q Consensus 296 ~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l 375 (2054)
.+ ++.+.+++.++++. +|..|+.++.+++...+
T Consensus 114 ~l-----~~~v~~ll~~~~~~---------VRk~A~~~l~~i~~~~p--------------------------------- 146 (526)
T PF01602_consen 114 PL-----IPDVIKLLSDPSPY---------VRKKAALALLKIYRKDP--------------------------------- 146 (526)
T ss_dssp HH-----HHHHHHHHHSSSHH---------HHHHHHHHHHHHHHHCH---------------------------------
T ss_pred HH-----HHHHHHHhcCCchH---------HHHHHHHHHHHHhccCH---------------------------------
Confidence 43 46777888877754 66777777777653111
Q ss_pred hcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHH
Q 000145 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILS 455 (2054)
Q Consensus 376 ~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~A 455 (2054)
+.+... ..+.+..++.+.+.. ++..|+.++..+-.++.... -.-...++.|..++...++-.|......
T Consensus 147 --------~~~~~~-~~~~l~~lL~d~~~~-V~~~a~~~l~~i~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~ 215 (526)
T PF01602_consen 147 --------DLVEDE-LIPKLKQLLSDKDPS-VVSAALSLLSEIKCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRL 215 (526)
T ss_dssp --------CCHHGG-HHHHHHHHTTHSSHH-HHHHHHHHHHHHHCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred --------HHHHHH-HHHHHhhhccCCcch-hHHHHHHHHHHHccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHH
Confidence 112222 457788888777654 88888888888812222111 1112344556666688899999999999
Q ss_pred HHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHH
Q 000145 456 LTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREV 535 (2054)
Q Consensus 456 L~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~ 535 (2054)
+..++...+..... ...++.+..++++.++.+...++.++..+... .. .-..++++|.++|.++++++|..
T Consensus 216 l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~ 286 (526)
T PF01602_consen 216 LRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYI 286 (526)
T ss_dssp HTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehh
Confidence 99888764433311 35678888888988899999999999988763 22 23357889999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHHcCChHHHHHhhc-cCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHh-cCCCcchHHHH
Q 000145 536 AAHVLWILCCHSEDIRACVESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAAD-SATINQLLALL-LGDSPSSKAHV 612 (2054)
Q Consensus 536 AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLk-S~~~evq~~AA~AL~nLs~~~e-~~~Ip~Lv~LL-~~~~~~V~~~a 612 (2054)
+...|..++... ...+. .....+..++ ++++.++..+...|.+++.... ..+++.|.+.+ ..++++++..+
T Consensus 287 ~L~~L~~l~~~~---~~~v~---~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~ 360 (526)
T PF01602_consen 287 ALDSLSQLAQSN---PPAVF---NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRREL 360 (526)
T ss_dssp HHHHHHHHCCHC---HHHHG---THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHH
T ss_pred HHHHHHHhhccc---chhhh---hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhH
Confidence 999999998754 22221 2333344444 8899999999999999987644 45778899999 45577889999
Q ss_pred HHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-C
Q 000145 613 IKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-N 691 (2054)
Q Consensus 613 ~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d-g 691 (2054)
..+++.++...... ..-.++.+++++..+++.+...+...+.++...+++.+.. ++..+++.+.+ .
T Consensus 361 i~~I~~la~~~~~~--------~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~-----~l~~L~~~l~~~~ 427 (526)
T PF01602_consen 361 IKAIGDLAEKFPPD--------AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREK-----ILKKLIELLEDIS 427 (526)
T ss_dssp HHHHHHHHHHHGSS--------HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHH-----HHHHHHHHHTSSS
T ss_pred HHHHHHHHhccCch--------HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHH-----HHHHHHHHHHHhh
Confidence 99998887432211 1125889999999888888888888899988766655544 37888888876 6
Q ss_pred CHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-Ch--HHHHHHHhcCcHH
Q 000145 692 TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DP--DIAAEVLLEDVVS 768 (2054)
Q Consensus 692 s~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~--e~r~~Iv~~g~I~ 768 (2054)
++..+..++|.++..+...+ . .. .....++.+.+.....++.++...+.++.-+.. +| +... ..++
T Consensus 428 ~~~~~~~~~wilGEy~~~~~---~--~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~-----~i~~ 496 (526)
T PF01602_consen 428 SPEALAAAIWILGEYGELIE---N--TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQN-----EILQ 496 (526)
T ss_dssp SHHHHHHHHHHHHHHCHHHT---T--TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHH-----HHHH
T ss_pred HHHHHHHHHhhhcccCCccc---c--cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHH-----HHHH
Confidence 77889999999999875111 1 00 112245556666666778899999999988864 33 2222 2445
Q ss_pred HHHHHHc--CCCHHHHHHHHHHHHHh
Q 000145 769 ALTRVLA--EGTSEGKKNASRALHQL 792 (2054)
Q Consensus 769 ~LV~LL~--s~~~evr~~Aa~AL~nL 792 (2054)
.+..+.. +.++++|+.|.+.+.=|
T Consensus 497 ~~~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 497 FLLSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 5666667 77999999998877544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-08 Score=125.50 Aligned_cols=497 Identities=15% Similarity=0.057 Sum_probs=296.4
Q ss_pred HccCCHHHHHHHHHHHHHhc-cCchhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHH
Q 000145 93 LRSGTPLAKVNVAATLSVLC-KDEDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVT 169 (2054)
Q Consensus 93 Lks~s~evr~~AA~vL~~Ls-~~ee~r~~v~~~GaIp~LV~LL~se--d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~ 169 (2054)
+-+.+++....+..-..++. ...+.+..+...|+++.|+.++..+ .++.....+..+..+..+ ++.....+.+
T Consensus 18 L~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~----eqd~v~svL~ 93 (678)
T KOG1293|consen 18 LLHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLG----EQDKVDSVLR 93 (678)
T ss_pred hhcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhh----ccchHHHHHH
Confidence 34456666666666676654 4567777888999999999999874 667777788888888873 5556788899
Q ss_pred cCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCch--hHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhc
Q 000145 170 EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGY--WRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAF 247 (2054)
Q Consensus 170 aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r--~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~ 247 (2054)
.+..+.|+++|.++. ...+.+..+++++++-...... .....+...+..+..++.-+...+...-+.....++ ..
T Consensus 94 ~~~ll~Ll~LLs~sD--~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s-~~ 170 (678)
T KOG1293|consen 94 IIELLKLLQLLSESD--SLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLS-ST 170 (678)
T ss_pred HhhHHHHHHHhcCcc--hHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccc-cc
Confidence 999999999998664 2357888999999998876322 122222233444444444244445555555555555 44
Q ss_pred CCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHH---HHhhccHHHHHHHHh---cCCHH---HHHHhhcCCchhhh
Q 000145 248 GDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALE---ALSSKSIKAKKAVVA---ADGVP---VLIGAIVAPSKECM 318 (2054)
Q Consensus 248 ~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~---nLs~~s~e~Rk~I~e---aggL~---~LIeLL~s~s~e~~ 318 (2054)
++++....+.|..+.+.-++.. .....|..|...+. .+..+++.....++. .+|+. .+..+..++...
T Consensus 171 ~~hq~Il~Na~i~ekI~~l~~~-~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s-- 247 (678)
T KOG1293|consen 171 KDHQLILCNAGILEKINILLMY-LSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFS-- 247 (678)
T ss_pred chhhheeccccchhhHHHHHHh-hhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCcc--
Confidence 4666667788888887776663 45578888888887 666654444333321 22222 233333333211
Q ss_pred hhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHH-HHHH
Q 000145 319 QGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIED-ILVM 397 (2054)
Q Consensus 319 q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~-~Lv~ 397 (2054)
.+..+..||-+.+. .. .+.++-.....+.+.+-+. ....
T Consensus 248 -------~~l~sl~cl~~~~~-------------------------------~s--~~~d~l~~~~~~~dmgd~~i~q~~ 287 (678)
T KOG1293|consen 248 -------ERLRSLECLVPYLR-------------------------------KS--FNYDPLPWWFIFFDMGDSLIVQYN 287 (678)
T ss_pred -------HHHHHHHHHHHHHh-------------------------------cc--ccccccccceeeccCchHHHHHHh
Confidence 12223333322221 10 0001111122232222110 0011
Q ss_pred HcCC-CChhhHHHHHHHHHHHh-hc-ChhhhHHHhhcchHHHHHHHhc------cCCHHHHHHHHHH---HHHhccc-Cc
Q 000145 398 LLKP-HDNKLVQERVLEAMASL-YG-NIFLSQWVSHAEAKKVLIGLIT------MATADVREYLILS---LTKLCRR-EV 464 (2054)
Q Consensus 398 LLk~-~~~e~Vq~~Aa~AL~~L-~~-n~~~~~~L~~~g~I~~LI~LL~------ssd~evq~~Aa~A---L~~Ls~~-s~ 464 (2054)
.+.. .++...+..+...+..+ ++ -+.++....+....+..++++. .+.++.+.-++.- ...++.. ..
T Consensus 288 ~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i 367 (678)
T KOG1293|consen 288 CIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEI 367 (678)
T ss_pred hheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcch
Confidence 1111 11111222222222221 21 1233333344445555555542 2333333332211 1122221 12
Q ss_pred cchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHh
Q 000145 465 GIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILC 544 (2054)
Q Consensus 465 e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa 544 (2054)
..++.+-+.-....+..+....|......|+.++.+.++....-|....+..+..+|+++|..++..++..+.++++|+.
T Consensus 368 ~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV 447 (678)
T KOG1293|consen 368 SLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV 447 (678)
T ss_pred hHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHH
Confidence 23333433333344444555667778888888888888754555555667789999999999999999999999999999
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhc
Q 000145 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL 624 (2054)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~ 624 (2054)
.+-...+..+.+.|+|..+..++.+.++.++..+.|+|.++....+. ..+..
T Consensus 448 mefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de---------------~~k~~------------- 499 (678)
T KOG1293|consen 448 MEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE---------------EEKFQ------------- 499 (678)
T ss_pred hhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH---------------HHHHH-------------
Confidence 98888899999999999999999999999999999999999866321 11111
Q ss_pred chHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhh
Q 000145 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL 675 (2054)
Q Consensus 625 ~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~I 675 (2054)
..++. ....++.+.+++++.++|.+...|+|+..+..+...-+
T Consensus 500 ---~~~ki-----~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfl 542 (678)
T KOG1293|consen 500 ---LLAKI-----PANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFL 542 (678)
T ss_pred ---HHHHh-----hHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHH
Confidence 11111 35567788899999999999999999987544444333
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-08 Score=123.02 Aligned_cols=404 Identities=14% Similarity=0.145 Sum_probs=257.1
Q ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCch
Q 000145 38 MSTVAKFLEQLHANMS-SPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED 116 (2054)
Q Consensus 38 ~~~V~qlIe~L~~sss-s~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee 116 (2054)
.+.+.++.++++..-. ..+....|+..|.+++..-..--++.. ...|..||+.|...+.+........|..|+...+
T Consensus 259 k~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrr--kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~e 336 (791)
T KOG1222|consen 259 KEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRR--KNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDE 336 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH--HhHHHHHHHHHcccchHHHHHHHHHHHHhhhhcc
Confidence 4555556666654211 112234566667777766533333333 4679999999999999999999999999999999
Q ss_pred hHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHH
Q 000145 117 LRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG 196 (2054)
Q Consensus 117 ~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~ 196 (2054)
++..+.+.|.|..|+++.-.++++.+......|.|+|.. ...+.+++..|.+|.|..++.+.++-+ -|+.
T Consensus 337 NK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-----~glr~KMv~~GllP~l~~ll~~d~~~~-----iA~~ 406 (791)
T KOG1222|consen 337 NKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-----SGLRPKMVNGGLLPHLASLLDSDTKHG-----IALN 406 (791)
T ss_pred chHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-----ccccHHHhhccchHHHHHHhCCcccch-----hhhh
Confidence 999999999999999999999999999999999999974 345789999999999999998776332 4677
Q ss_pred HHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHH
Q 000145 197 ALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVR 276 (2054)
Q Consensus 197 aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr 276 (2054)
.|..++.+++.+ ..+....+|+ .+...+-.+.+.++-
T Consensus 407 ~lYh~S~dD~~K-~MfayTdci~------------------------------------------~lmk~v~~~~~~~vd 443 (791)
T KOG1222|consen 407 MLYHLSCDDDAK-AMFAYTDCIK------------------------------------------LLMKDVLSGTGSEVD 443 (791)
T ss_pred hhhhhccCcHHH-HHHHHHHHHH------------------------------------------HHHHHHHhcCCceec
Confidence 888887755332 1122222333 333332222232222
Q ss_pred HHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhhhHHHHHHHHHhcCchh-HHH---Hhhhh
Q 000145 277 ASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALANIYGGMPA-LVV---YLGEL 351 (2054)
Q Consensus 277 ~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s-~s~e~~q~~~~~~lqe~Al~ALanLsGgis~-lI~---~L~el 351 (2054)
......-.|++. +..+.+.+.+..|+..|.+.-.. .+.-.| -.++.++.--|.... .|. -|...
T Consensus 444 l~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra~k~~D~lLm----------K~vRniSqHeg~tqn~FidyvgdLa~i 512 (791)
T KOG1222|consen 444 LALIALCINLCL-NKRNAQLVCEGQGLDLLMERAIKSRDLLLM----------KVVRNISQHEGATQNMFIDYVGDLAGI 512 (791)
T ss_pred HHHHHHHHHHHh-ccccceEEecCcchHHHHHHHhcccchHHH----------HHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 222222234444 24444555555666666553322 111111 112222211121111 122 23333
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCC-ChhhHHHHHHHHHHHhhcChhhhHHHhh
Q 000145 352 SQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPH-DNKLVQERVLEAMASLYGNIFLSQWVSH 430 (2054)
Q Consensus 352 L~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~-~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~ 430 (2054)
.+..++..-..+.+|.++..-. + + ..-..++.....+|++...+.+. +.++.......++|.++++.++...+..
T Consensus 513 ~~nd~~E~F~~EClGtlanL~v--~-d-ldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~ 588 (791)
T KOG1222|consen 513 AKNDNSESFGLECLGTLANLKV--T-D-LDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAP 588 (791)
T ss_pred hhcCchHHHHHHHHHHHhhccc--C-C-CCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCc
Confidence 4444444455556666554211 0 0 11123445566779999888775 3445778888899999999998888999
Q ss_pred cchHHHHHHHhcc--CCHHHHHHHHHHHHHhcccCccchhhhhcc-ccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc
Q 000145 431 AEAKKVLIGLITM--ATADVREYLILSLTKLCRREVGIWEAIGKR-EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD 507 (2054)
Q Consensus 431 ~g~I~~LI~LL~s--sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~-ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e 507 (2054)
.+.++.++.+++. .+.+........+..+-.+ ...+..+++. ..-..++.++...+.++|+.+-.+|-.++.++.+
T Consensus 589 a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 589 AKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred cccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999976 4566666667777777776 3444444443 4445699999999999999999999989886555
Q ss_pred hhhHH
Q 000145 508 SKWAI 512 (2054)
Q Consensus 508 ~r~~I 512 (2054)
....|
T Consensus 668 WAKrI 672 (791)
T KOG1222|consen 668 WAKRI 672 (791)
T ss_pred HHHHH
Confidence 43333
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.2e-06 Score=105.15 Aligned_cols=771 Identities=15% Similarity=0.126 Sum_probs=399.0
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHh
Q 000145 55 PQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG-TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSL 133 (2054)
Q Consensus 55 ~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~-s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~L 133 (2054)
...|.+++.+|.+++.... +... .+.++.|++-|... ......--...|..+|.....|---.-...+|.+.+.
T Consensus 188 ~aVrKkai~~l~~la~~~~--~~ly---~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y 262 (1233)
T KOG1824|consen 188 LAVRKKAITALGHLASSCN--RDLY---VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADY 262 (1233)
T ss_pred HHHHHHHHHHHHHHHHhcC--HHHH---HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHH
Confidence 3457778888888865431 1122 13455566555443 2333333445555555433332221223567888888
Q ss_pred h---ccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCC-C-------------------------
Q 000145 134 L---KSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK-N------------------------- 184 (2054)
Q Consensus 134 L---~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~-s------------------------- 184 (2054)
. ..++.+.|+.+.++|..+-..+. .+ .-.+ -..++..+++.+..+ +
T Consensus 263 ~~~~e~~dDELrE~~lQale~fl~rcp--~e--i~p~-~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~de 337 (1233)
T KOG1824|consen 263 CNKIEEDDDELREYCLQALESFLRRCP--KE--ILPH-VPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDE 337 (1233)
T ss_pred hcccccCcHHHHHHHHHHHHHHHHhCh--hh--hccc-chHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccc
Confidence 8 44688999999999999886421 11 1000 011333333433321 0
Q ss_pred -----CCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchh-----
Q 000145 185 -----KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTV----- 254 (2054)
Q Consensus 185 -----~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i----- 254 (2054)
.....+++.|+.++..+-.........+.+.-| |.++..++...++++.....+.-.+....+......
T Consensus 338 YsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~-p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~ 416 (1233)
T KOG1824|consen 338 YSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLG-PALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDA 416 (1233)
T ss_pred cccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhC-HHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchh
Confidence 001357888888888877765443334444333 566677777667777777776666653211111111
Q ss_pred cccch-----------HHHHHHHhc---cCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000145 255 IDSGA-----------VKALVQLVG---QNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2054)
Q Consensus 255 ~~sGa-----------L~~LL~LL~---s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~ 320 (2054)
.+.|+ ++.+++.++ +......+..+...|..+....+..-.+ .....++.++..+.+.+..-
T Consensus 417 ~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~-~~~slvpgI~~~l~DkSsss--- 492 (1233)
T KOG1824|consen 417 MEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQ-HIPSLVPGIIYSLNDKSSSS--- 492 (1233)
T ss_pred hhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhh-cccccchhhhhhcCCccchH---
Confidence 11122 233444442 1233344555555555554422211111 11234555666665544221
Q ss_pred hhhhhhhhHHHHHHHHHhcCch-hH----HHHhhhhcC---CCCchhhHHHHHHHHHHHHHHhhcCCCCCC-----cccc
Q 000145 321 QRGQALQGHATRALANIYGGMP-AL----VVYLGELSQ---SPRLAAPVADIIGALAYALMVFEQKSGVDD-----EPFD 387 (2054)
Q Consensus 321 ~~~~~lqe~Al~ALanLsGgis-~l----I~~L~elL~---s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~-----~~~~ 387 (2054)
+ ...-++..+.++-..-+ +. ++.|...+- ..+-.+-.+++|..++....++. +.... ..+.
T Consensus 493 ---~-~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvir--pl~~~~~~d~~~~v 566 (1233)
T KOG1824|consen 493 ---N-LKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIR--PLQPPSSFDASPYV 566 (1233)
T ss_pred ---H-HHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhc--ccCCCccCCCChhH
Confidence 1 22223333333221111 11 111111111 01123344555555544433332 21111 1111
Q ss_pred hhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhc-cCCHHHHHHHHHHHHHhcccCccc
Q 000145 388 ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT-MATADVREYLILSLTKLCRREVGI 466 (2054)
Q Consensus 388 ~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~-ssd~evq~~Aa~AL~~Ls~~s~e~ 466 (2054)
..-..-.+..+.....+.++|++++.+++.+..+.. .+...+....|.-++. .+++-++..|+.+++.++...-..
T Consensus 567 ~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg---D~l~~eL~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i 643 (1233)
T KOG1824|consen 567 KTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG---DFLGNELPRTLPILLERLGNEITRLTAVKALTLIAMSPLDI 643 (1233)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHHHHHHhchhHHHHHHHHHHHHHhcccee
Confidence 111212223333334455699999999998743321 1111222233333332 355778888999999887763322
Q ss_pred h-hhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccch-hhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHh
Q 000145 467 W-EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDS-KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILC 544 (2054)
Q Consensus 467 r-~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~-r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa 544 (2054)
- ..+ -..+++.+.+.++......+.....++-.|..+..+. .....+. .+..+-.++...+..+-+.|...|..+.
T Consensus 644 ~l~~~-l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lisesdlhvt~~a~~~L~tl~ 721 (1233)
T KOG1824|consen 644 DLSPV-LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISESDLHVTQLAVAFLTTLA 721 (1233)
T ss_pred ehhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2 222 2356788888888777777777777777776533221 1111111 2223334455667788888999998887
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh----hchhh-HHHHHHHhcCCCcc-----hHHH---
Q 000145 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA----ADSAT-INQLLALLLGDSPS-----SKAH--- 611 (2054)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~----~e~~~-Ip~Lv~LL~~~~~~-----V~~~--- 611 (2054)
......- .-.....++.++.+++|+ -++-.+..++.++... ...+. +..+..++...-.+ ...+
T Consensus 722 ~~~ps~l-~~~~~~iL~~ii~ll~Sp--llqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~ 798 (1233)
T KOG1824|consen 722 IIQPSSL-LKISNPILDEIIRLLRSP--LLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYY 798 (1233)
T ss_pred hcccHHH-HHHhhhhHHHHHHHhhCc--cccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHH
Confidence 6443322 223466788889999875 4455566666655543 11111 45566666543222 2222
Q ss_pred -HHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc--CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh
Q 000145 612 -VIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS--SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688 (2054)
Q Consensus 612 -a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks--~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL 688 (2054)
.+.|.+.|....+.+ .......|+.=+.+ .+..+|-.|.-.|..+..... .....+.-..+++.+
T Consensus 799 siA~cvA~Lt~~~~~~--------s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iieaf 866 (1233)
T KOG1824|consen 799 SIAKCVAALTCACPQK--------SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIEAF 866 (1233)
T ss_pred HHHHHHHHHHHhcccc--------chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHHHc
Confidence 344444443322211 01123344443333 356777777777777765311 112234455777888
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh-C-ChHHHHHHHhcCc
Q 000145 689 TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL-S-DPDIAAEVLLEDV 766 (2054)
Q Consensus 689 ~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa-~-~~e~r~~Iv~~g~ 766 (2054)
.+.+++++..|+.||++++.++-+ ..+|-++....+.. .-+.--+..|-... + ..+ .....
T Consensus 867 ~sp~edvksAAs~ALGsl~vgnl~-----------~yLpfil~qi~sqp-k~QyLLLhSlkevi~~~svd-----~~~~~ 929 (1233)
T KOG1824|consen 867 NSPSEDVKSAASYALGSLAVGNLP-----------KYLPFILEQIESQP-KRQYLLLHSLKEVIVSASVD-----GLKPY 929 (1233)
T ss_pred CCChHHHHHHHHHHhhhhhcCchH-----------hHHHHHHHHHhcch-HhHHHHHHHHHHHHHHhccc-----hhhhh
Confidence 999999999999999999874332 25566666665532 22222222222111 1 011 01123
Q ss_pred HHHHHHHHc----CCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000145 767 VSALTRVLA----EGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2054)
Q Consensus 767 I~~LV~LL~----s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~ 842 (2054)
++.+..+|. ...+-.|.-.++||+.|+...| ...+++|-..++++.... +.-++.+..+.-..
T Consensus 930 v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep-----------esLlpkL~~~~~S~a~~~--rs~vvsavKfsisd 996 (1233)
T KOG1824|consen 930 VEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP-----------ESLLPKLKLLLRSEASNT--RSSVVSAVKFSISD 996 (1233)
T ss_pred HHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh-----------HHHHHHHHHHhcCCCcch--hhhhhheeeeeecC
Confidence 444554443 2234558888999999998654 457888988888766544 44444443333221
Q ss_pred ccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHh
Q 000145 843 KQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIM 915 (2054)
Q Consensus 843 ~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il 915 (2054)
.+..++ .-..+-++.+..++.+++..+++-|+.++.....+.| .+|..|...++
T Consensus 997 --~p~~id------~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKp-----------slIrDllpeLL 1050 (1233)
T KOG1824|consen 997 --QPQPID------PLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKP-----------SLIRDLLPELL 1050 (1233)
T ss_pred --CCCccC------HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCH-----------hHHHHHHHHHH
Confidence 223332 1112346788899999999999999999998877766 45555555554
|
|
| >KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-07 Score=118.16 Aligned_cols=479 Identities=14% Similarity=0.091 Sum_probs=286.2
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCC-ChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHH
Q 000145 227 SDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN-DISVRASAADALEALSSKSIKAKKAVVAADGVPV 305 (2054)
Q Consensus 227 s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~-d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~ 305 (2054)
..+++....+..-..|+..++++....+.+.|+++.++.+++..+ ..+.+...+.++..+..+..+....+.+.+.++.
T Consensus 20 ~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll~ 99 (678)
T KOG1293|consen 20 HLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELLK 99 (678)
T ss_pred cCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHHH
Confidence 345566666777778888788888888999999999999997322 3345545666677777766777788999999999
Q ss_pred HHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcc
Q 000145 306 LIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEP 385 (2054)
Q Consensus 306 LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~ 385 (2054)
|..++.++++.. ..+.+++++.++....+.. .. .-.
T Consensus 100 Ll~LLs~sD~~~--------~le~~l~~lR~Ifet~~~q-------------~~-----------------------~~s 135 (678)
T KOG1293|consen 100 LLQLLSESDSLN--------VLEKTLRCLRTIFETSKYQ-------------DK-----------------------KMS 135 (678)
T ss_pred HHHHhcCcchHh--------HHHHHHHHHHHHHhccccc-------------cc-----------------------chh
Confidence 999998877332 4466777777765321110 00 000
Q ss_pred cchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHH---Hhccc
Q 000145 386 FDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLT---KLCRR 462 (2054)
Q Consensus 386 ~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~---~Ls~~ 462 (2054)
.....+++.+..+.... .+.+...-+.-...+++-.+.+..+.+.+..+.+.-++...+...|..+...++ ++.++
T Consensus 136 ~~~~sIi~~~s~l~s~~-lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~N 214 (678)
T KOG1293|consen 136 LHLKSIIVKFSLLYSIE-LKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRN 214 (678)
T ss_pred hhHHHHHHHHHHHHhhh-hhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeec
Confidence 01112222222222211 111111111111222233333334455566666655566556777777778887 66666
Q ss_pred Cccchhhh----hccccHH--HHHhhhcCCChhhhHHHHHHHHHHhhhccchh----hHHHhhCCCchHhh-----hhhc
Q 000145 463 EVGIWEAI----GKREGIQ--LLISLLGLSSEQHQEYAVQLIAILTEQVDDSK----WAITAAGGIPPLVQ-----LLEA 527 (2054)
Q Consensus 463 s~e~r~~I----ve~ggIp--~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r----~~I~~aGaIp~LV~-----LL~s 527 (2054)
++...... ...|..+ ...+++++++...+..++.++.++...+.... +.+.-..+-..++. +...
T Consensus 215 n~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~ 294 (678)
T KOG1293|consen 215 NPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMND 294 (678)
T ss_pred CchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecC
Confidence 55544332 2323333 45668888888888889999888876542221 22222222222222 1222
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhc------cCChhHHHHHHHHHHHH---HHhhc--------
Q 000145 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK------SGGPKGQDASAMALTKL---IRAAD-------- 590 (2054)
Q Consensus 528 ~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLk------S~~~evq~~AA~AL~nL---s~~~e-------- 590 (2054)
+-......++...+.++.-...++....+...++.+.++++ .+.++.+.-++.-..-+ +...+
T Consensus 295 P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l 374 (678)
T KOG1293|consen 295 PGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEIL 374 (678)
T ss_pred CceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHH
Confidence 22222233334444444222233333334455555555544 23444443333221111 11110
Q ss_pred -hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcCh
Q 000145 591 -SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ 669 (2054)
Q Consensus 591 -~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~ 669 (2054)
..+...+..+....+......++.|+..+++. .+..+.+....+++.+||+++..++..++..+.+++.|+.-...
T Consensus 375 ~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srs---V~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs 451 (678)
T KOG1293|consen 375 ETTTESHLMCLPPIKDHDFVAAALLCLKSFSRS---VSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS 451 (678)
T ss_pred HHHHHHHHccccccccHHHHHHHHHHHHHHHHH---HHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc
Confidence 11122222223334444555556666655443 33455557788899999999999999999999999999988778
Q ss_pred hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHH
Q 000145 670 DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA 749 (2054)
Q Consensus 670 e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~ 749 (2054)
..+..+.+.|+|+.+..++.+.++.+|..+.|+|+++.....+ ..+......-...-+..+.++++..|++.+...|.
T Consensus 452 ~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de--~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR 529 (678)
T KOG1293|consen 452 NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE--EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLR 529 (678)
T ss_pred cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH--HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999873333 33333344434455778889999999999999999
Q ss_pred HhhCCh
Q 000145 750 NLLSDP 755 (2054)
Q Consensus 750 NLa~~~ 755 (2054)
||.++.
T Consensus 530 Nl~c~~ 535 (678)
T KOG1293|consen 530 NLTCNS 535 (678)
T ss_pred HhhcCc
Confidence 998864
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.4e-07 Score=112.67 Aligned_cols=656 Identities=15% Similarity=0.129 Sum_probs=347.9
Q ss_pred CcHHHHHHHHcc---CCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhc---cCCHHHHHHHHHHHHHHhcCCC
Q 000145 84 QAMPLFISILRS---GTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLK---SESTDTRKAAAEALYEVSSGGL 157 (2054)
Q Consensus 84 GgVp~LV~LLks---~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~---sed~eVr~aAa~AL~nLS~~~~ 157 (2054)
.|+..+..+|+. ++++++.++..-|..+-..++. --.|+-+|. +++..+|..|--.|.|=-.++.
T Consensus 10 ~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~~pdf---------nnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~ 80 (885)
T KOG2023|consen 10 QGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNLFPDF---------NNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHY 80 (885)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcccch---------hceeeEEEecccccchhHHHHhhhhHhccccccc
Confidence 467777777764 5788888887777665322221 112222232 2466666666666665443322
Q ss_pred CCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHH-HHhcCC-CchhHHHHhhCChHHHHhhhccCCHHHHHH
Q 000145 158 SDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALR-NLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSN 235 (2054)
Q Consensus 158 nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~-nL~~~~-e~r~~aI~eaGGI~~LV~LL~s~s~evq~~ 235 (2054)
+.-.......++..+++.+ .. .++ +.....+++. .+.+.. -..| ..+++.|+.+|.+++...++.
T Consensus 81 ~~~~~~~~~yiKs~~l~~l----gd---~~~-lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d~n~~Eg 147 (885)
T KOG2023|consen 81 NSIPSEVLDYIKSECLHGL----GD---ASP-LIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPDYNTCEG 147 (885)
T ss_pred cCCChHHHHHHHHHHHhhc----cC---chH-HHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCcccccch
Confidence 2122223333444333322 11 122 2223233222 222211 0111 236899999999999999999
Q ss_pred HHHHHHHHHhhcCCCcch-hcc---cchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhc
Q 000145 236 AASLLARLMLAFGDSIPT-VID---SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIV 311 (2054)
Q Consensus 236 A~~aL~nLs~~~~~~r~~-i~~---sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~ 311 (2054)
|..+|+++|....+.-.. ..+ .-.+|.+++.+++ +++.+|..|..++..+....+..- ...-..-++.+..+-.
T Consensus 148 A~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~spkiRs~A~~cvNq~i~~~~qal-~~~iD~Fle~lFalan 225 (885)
T KOG2023|consen 148 AFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-PSPKIRSHAVGCVNQFIIIQTQAL-YVHIDKFLEILFALAN 225 (885)
T ss_pred hHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-CChhHHHHHHhhhhheeecCcHHH-HHHHHHHHHHHHHHcc
Confidence 999999999433221111 001 1368899999985 577999999988877655311111 1111233445555555
Q ss_pred CCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhH
Q 000145 312 APSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQI 391 (2054)
Q Consensus 312 s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gI 391 (2054)
+++++ +|.+...+|.-+...-+.. +. . .-.++
T Consensus 226 D~~~e---------VRk~vC~alv~Llevr~dk------l~-------------------------------p--hl~~I 257 (885)
T KOG2023|consen 226 DEDPE---------VRKNVCRALVFLLEVRPDK------LV-------------------------------P--HLDNI 257 (885)
T ss_pred CCCHH---------HHHHHHHHHHHHHHhcHHh------cc-------------------------------c--chHHH
Confidence 55554 3444444443322111100 00 0 01134
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhc--chHHHHHHHhccCCH-----------------------
Q 000145 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHA--EAKKVLIGLITMATA----------------------- 446 (2054)
Q Consensus 392 e~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~--g~I~~LI~LL~ssd~----------------------- 446 (2054)
+.+.....+..+.. +-..|++-...++..+..+..+... ..++.|+.-+..++.
T Consensus 258 veyML~~tqd~dE~-VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkP 336 (885)
T KOG2023|consen 258 VEYMLQRTQDVDEN-VALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKP 336 (885)
T ss_pred HHHHHHHccCcchh-HHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccc
Confidence 45555555544433 6666666666666666333333221 334444332211110
Q ss_pred ---------------------------------HHHHHHHHHHHHhcccCccchhhhhcccc----HHHHHhhhcCCChh
Q 000145 447 ---------------------------------DVREYLILSLTKLCRREVGIWEAIGKREG----IQLLISLLGLSSEQ 489 (2054)
Q Consensus 447 ---------------------------------evq~~Aa~AL~~Ls~~s~e~r~~Ive~gg----Ip~LV~LL~s~d~~ 489 (2054)
..++..+.+|--++.- ..... .|.|.+.|.+++=.
T Consensus 337 Rfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv--------f~~elL~~l~PlLk~~L~~~~W~ 408 (885)
T KOG2023|consen 337 RFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV--------FGDELLPILLPLLKEHLSSEEWK 408 (885)
T ss_pred hhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh--------hHHHHHHHHHHHHHHHcCcchhh
Confidence 1233333333333321 11222 34555556666667
Q ss_pred hhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcC--ChhHHHHHHHcCChHHHHHhh
Q 000145 490 HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH--SEDIRACVESAGAVPAFLWLL 567 (2054)
Q Consensus 490 Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~--sd~~r~~I~e~GaI~aLV~LL 567 (2054)
+|+.++-+|+.++.+.-+.-..-. ...+|.|+++|.+..+-+|...+|+|...+.. .+...+.+ ...+..|++.+
T Consensus 409 vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f--~pvL~~ll~~l 485 (885)
T KOG2023|consen 409 VREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF--KPVLEGLLRRL 485 (885)
T ss_pred hhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh--HHHHHHHHHHH
Confidence 999999999999874321100000 12467788899999999999999999987652 11111221 12233444444
Q ss_pred ccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcC----------CCcchHHHHHHHHHHHHhh----hcchHHHHhhh
Q 000145 568 KSGGPKGQDASAMALTKLIRAADSATINQLLALLLG----------DSPSSKAHVIKVLGHVLTM----ALQEDLVQKGS 633 (2054)
Q Consensus 568 kS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~----------~~~~V~~~a~~AL~~La~~----~~~~d~~~~~l 633 (2054)
-+++..+|+.|+.+...+-.....+.+|.|-.+|+. .+--+ ...|++.++.. .+++...+.
T Consensus 486 lD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlI---LYDAIgtlAdsvg~~Ln~~~Yiqi-- 560 (885)
T KOG2023|consen 486 LDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLI---LYDAIGTLADSVGHALNKPAYIQI-- 560 (885)
T ss_pred hcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceeh---HHHHHHHHHHHHHHhcCcHHHHHH--
Confidence 578999999999999999877666777776665542 11112 23455555422 233332222
Q ss_pred hcccchHHHHH---HhccCC-------------------------HHHHHHHHHHHHHHhh----c--------------
Q 000145 634 AANKGLRSLVQ---VLNSSN-------------------------EENQEYAASVLADLFS----M-------------- 667 (2054)
Q Consensus 634 ~~~GaI~~LV~---LLks~s-------------------------~evre~Aa~ALanLas----~-------------- 667 (2054)
.+++|++ ++++++ +.+-+.+.+.+.+... .
T Consensus 561 ----LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfi 636 (885)
T KOG2023|consen 561 ----LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFI 636 (885)
T ss_pred ----hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceE
Confidence 2344443 222222 3333444444442211 0
Q ss_pred --------------ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhh
Q 000145 668 --------------RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA 733 (2054)
Q Consensus 668 --------------~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL 733 (2054)
.......+.+.+...-+...+.+..++||..|=.-|+.++....+ ..+.. ....++.|-.-+
T Consensus 637 I~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~--~v~p~--~~~fl~~lg~Nl 712 (885)
T KOG2023|consen 637 IVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFE--HVIPN--LADFLPILGANL 712 (885)
T ss_pred EEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH--hccch--HHHHHHHHhhcC
Confidence 011112233456677778888999999999888888888873222 22211 112333333334
Q ss_pred hcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhh
Q 000145 734 KTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFV 811 (2054)
Q Consensus 734 ~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~--~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~ 811 (2054)
+.....+..+|+|+++.++..-....+..-...+..|+..+... ...+-++.+-.+++|+...| +.++- .. ...
T Consensus 713 ~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~P--e~vAp-~l-~~f 788 (885)
T KOG2023|consen 713 NPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICP--EEVAP-HL-DSF 788 (885)
T ss_pred ChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCH--Hhcch-hH-HHH
Confidence 44566788899999999985222111111123455566665544 45788999999999998765 22221 11 335
Q ss_pred HHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 812 VLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 812 v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
+.+-+..++.-+++ ..+..|-+.+.++-.
T Consensus 789 ~~pWc~sl~~i~Dn-eEK~sAFrG~c~mi~ 817 (885)
T KOG2023|consen 789 MRPWCTSLRNIDDN-EEKESAFRGLCNMIN 817 (885)
T ss_pred HHHHHHHhcccccc-hhHHHHHHHHHHhee
Confidence 55666666644433 357778887777664
|
|
| >KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-07 Score=109.38 Aligned_cols=372 Identities=14% Similarity=0.131 Sum_probs=270.1
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~ 486 (2054)
.-.-+..-|.+++.+-.....+.....+.+|+..+..++.+........|..++.- .+++..+.+.|.+..|++++...
T Consensus 279 LLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCC
Confidence 33445566788888888888889999999999999999999888888999999987 68888898999999999999999
Q ss_pred ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHh
Q 000145 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566 (2054)
Q Consensus 487 d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~L 566 (2054)
+++.+...+..|.|++. +...|..++..|-+|.|+.+|.+... ...|...|+.++. ++..+.++....+|+.+...
T Consensus 358 h~dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~-dD~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSC-DDDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred CHHHHHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhcc-CcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 68899999999999999999976532 3457788999988 56778889999999999874
Q ss_pred hc-cCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhccc
Q 000145 567 LK-SGGPKGQDASAMALTKLIRAAD-------SATINQLLALL-LGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637 (2054)
Q Consensus 567 Lk-S~~~evq~~AA~AL~nLs~~~e-------~~~Ip~Lv~LL-~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~G 637 (2054)
+- ..+.++-........|++.... -..+..|++.. ++.++ .....+++++.+... .+..+. .
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~---tqn~Fi--d 504 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGA---TQNMFI--D 504 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccch---HHHHHH--H
Confidence 43 3444554444444557765532 22445555543 23322 123445555543221 111111 1
Q ss_pred chHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCC--HHHHHHHHHHHHHhhCCCCccc
Q 000145 638 GLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNT--QMVATQSARALGALSRPTKTKT 714 (2054)
Q Consensus 638 aI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs--~~vr~~AA~AL~nLs~s~~~~d 714 (2054)
.+..|...++.. +++---.+.+.|+||.-.+-+-...+-+...+|.+-..|+.+- +..+....-+++-++. ..
T Consensus 505 yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--d~-- 580 (791)
T KOG1222|consen 505 YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--DL-- 580 (791)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--hh--
Confidence 356666767665 4555667888888987655555555666788999988887652 3455555555555554 21
Q ss_pred chhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCChHHHHHHHhcCc-HHHHHHHHcCCCHHHHHHHHHHHHH
Q 000145 715 TNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDV-VSALTRVLAEGTSEGKKNASRALHQ 791 (2054)
Q Consensus 715 ~~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~-I~~LV~LL~s~~~evr~~Aa~AL~n 791 (2054)
....-+...++++.|+++|+. .+++.....+.+...+..+...|..++++.. -..++++|++.+.++|+-+-.+|--
T Consensus 581 ~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdI 660 (791)
T KOG1222|consen 581 DCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDI 660 (791)
T ss_pred HHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHH
Confidence 233345567899999999987 5667777778888888778777877776654 4567899999999999988888887
Q ss_pred hhhcC
Q 000145 792 LLKHF 796 (2054)
Q Consensus 792 L~~~~ 796 (2054)
++.+.
T Consensus 661 iae~d 665 (791)
T KOG1222|consen 661 IAEHD 665 (791)
T ss_pred HHHhh
Confidence 77754
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.91 E-value=4e-08 Score=116.07 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=155.7
Q ss_pred cccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc
Q 000145 635 ANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 635 ~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
+++.++.|+.+|+.. ++.+++.+..++.+.+. .+.++..+.+.|+++.+..++.+.++.+|..|..+|.|++.. .
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~--~- 85 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN--D- 85 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC--h-
Confidence 455689999999864 89999999999999877 789999999999999999999999999999999999999862 2
Q ss_pred cchhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Q 000145 714 TTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791 (2054)
Q Consensus 714 d~~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~n 791 (2054)
+++..+. ..+..+++...+ -+..++..++++|.||+..++.+..+.. .++.+.+++.+|+..+|..+.++|.|
T Consensus 86 -en~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 86 -ENQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred -hhHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3444333 257777765544 3678899999999999987777666644 79999999999999999999999999
Q ss_pred hhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 792 LLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 792 L~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
|+.+. ...+.+....+...++.+++. +.+......++....++..
T Consensus 161 LS~np----~~~~~Ll~~q~~~~~~~Lf~~-~~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 161 LSENP----DMTRELLSAQVLSSFLSLFNS-SESKENLLRVLTFFENINE 205 (254)
T ss_pred hccCH----HHHHHHHhccchhHHHHHHcc-CCccHHHHHHHHHHHHHHH
Confidence 99974 455555566688899999974 3344456667777777753
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=0.00034 Score=91.30 Aligned_cols=777 Identities=14% Similarity=0.127 Sum_probs=370.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcc-CchhHHHH
Q 000145 43 KFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKV 121 (2054)
Q Consensus 43 qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~-~ee~r~~v 121 (2054)
.++++..++..+ -|..|+.-|..--... ..+--.......+..++++|.+.+.+++..|.+.|+-+.+ -.+.+.+
T Consensus 9 ~LlekmtssDKD--fRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le- 84 (1233)
T KOG1824|consen 9 NLLEKMTSSDKD--FRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLE- 84 (1233)
T ss_pred HHHHHccCCCcc--hhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHH-
Confidence 556666544433 3777777665432211 0000000112368899999999999999999999998862 1222111
Q ss_pred HhcCChHHHHHhhccCCHHHHHHHHHHH-HHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCC-C--CChhHHHHHHHH
Q 000145 122 LLGGCIPPLLSLLKSESTDTRKAAAEAL-YEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN-K--QDNVVQGFVTGA 197 (2054)
Q Consensus 122 ~~~GaIp~LV~LL~sed~eVr~aAa~AL-~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s-~--~d~~V~e~Al~a 197 (2054)
-.+..|..-+-++-...|.-+.-.| ..++.-.. . ........+.+.+...+.... + +...+.-.++..
T Consensus 85 ---~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P--~---~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDi 156 (1233)
T KOG1824|consen 85 ---TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPP--S---SSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDI 156 (1233)
T ss_pred ---HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCC--c---cccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHH
Confidence 1223333222122222222222222 22222100 0 111222334444444433221 0 112244444555
Q ss_pred HHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHH
Q 000145 198 LRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277 (2054)
Q Consensus 198 L~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~ 277 (2054)
+.-+-+.--+-..- .+.+-...++.-+.+....++..++.+|..++...+ ...-.+.+..|++-|.+......-.
T Consensus 157 l~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~----~~ly~~li~~Ll~~L~~~~q~~~~r 231 (1233)
T KOG1824|consen 157 LADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN----RDLYVELIEHLLKGLSNRTQMSATR 231 (1233)
T ss_pred HHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHhccCCCCchHHHH
Confidence 54443322111000 233334555556666778899999999999984321 2223456677777775433322222
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCc
Q 000145 278 SAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL 357 (2054)
Q Consensus 278 ~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~ 357 (2054)
.-..+|..++.. ...|..-.-...++.+.+.+..-..+ .+.+++.++++|...-..-|. +.+++ .
T Consensus 232 t~Iq~l~~i~r~-ag~r~~~h~~~ivp~v~~y~~~~e~~------dDELrE~~lQale~fl~rcp~------ei~p~--~ 296 (1233)
T KOG1824|consen 232 TYIQCLAAICRQ-AGHRFGSHLDKIVPLVADYCNKIEED------DDELREYCLQALESFLRRCPK------EILPH--V 296 (1233)
T ss_pred HHHHHHHHHHHH-hcchhhcccchhhHHHHHHhcccccC------cHHHHHHHHHHHHHHHHhChh------hhccc--c
Confidence 233334443331 22232222356778888887332111 112778888887654211111 00100 0
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHc------CCCC----hhhHHHHHHHHHHHh-hcChhhhH
Q 000145 358 AAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLL------KPHD----NKLVQERVLEAMASL-YGNIFLSQ 426 (2054)
Q Consensus 358 ~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LL------k~~~----~e~Vq~~Aa~AL~~L-~~n~~~~~ 426 (2054)
.+-+--.+..+.|+. ....+.- +.+....+-.-= .+.| .+.+|..++.++..+ ....+.-.
T Consensus 297 pei~~l~l~yisYDP-------Ny~yd~~-eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~ 368 (1233)
T KOG1824|consen 297 PEIINLCLSYISYDP-------NYNYDTE-EDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLP 368 (1233)
T ss_pred hHHHHHHHHHhccCC-------CCCCCCc-cchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHH
Confidence 111111122222221 1100000 000001110000 0011 123888888888776 33333222
Q ss_pred HHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccch------hhhhccccHH-----------H----HHhhhcC
Q 000145 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIW------EAIGKREGIQ-----------L----LISLLGL 485 (2054)
Q Consensus 427 ~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r------~~Ive~ggIp-----------~----LV~LL~s 485 (2054)
.+.+ ..-+.+|.-++.-.+.++.....+...+-.+.+... +.+ +.||.+ . +-+.+++
T Consensus 369 ~~~q-~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~-e~~g~~s~~~~L~~~~~~iVkai~~qlr~ 446 (1233)
T KOG1824|consen 369 DFYQ-TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAM-EQGGTPSDLSMLSDQVPLIVKAIQKQLRE 446 (1233)
T ss_pred HHHH-HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhh-hccCCccchHHHHhhhHHHHHHHHHHHhh
Confidence 2221 122445555554445555444443333322111000 011 113222 2 3334455
Q ss_pred CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHh-cCChh-HHHHHHHcCChH
Q 000145 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILC-CHSED-IRACVESAGAVP 561 (2054)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa-~~sd~-~r~~I~e~GaI~ 561 (2054)
.+...+..+...|..+....++.-..- ....+|.+...|.+. +...+..+...|.+.. .++.+ ....+ .--.+
T Consensus 447 ks~kt~~~cf~lL~eli~~lp~~l~~~-~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~--~~Ls~ 523 (1233)
T KOG1824|consen 447 KSVKTRQGCFLLLTELINVLPGALAQH-IPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL--SALSP 523 (1233)
T ss_pred ccccchhhHHHHHHHHHHhCcchhhhc-ccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch--hhhhh
Confidence 555566666666666665333321100 112455666666543 5666777777666553 33332 11111 22334
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHHhhc--------------hhhHHHHHHHhc--CCCcchHHHHHHHHHHHHhhhcc
Q 000145 562 AFLWLLKSGGPKGQDASAMALTKLIRAAD--------------SATINQLLALLL--GDSPSSKAHVIKVLGHVLTMALQ 625 (2054)
Q Consensus 562 aLV~LLkS~~~evq~~AA~AL~nLs~~~e--------------~~~Ip~Lv~LL~--~~~~~V~~~a~~AL~~La~~~~~ 625 (2054)
+++....+.-+.+-..|..++..+..... ...+..-++.|+ +.|.+|++.+..|++.+...-.
T Consensus 524 ~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fg- 602 (1233)
T KOG1824|consen 524 PVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFG- 602 (1233)
T ss_pred HHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHh-
Confidence 44455566667777777777777765411 123344455554 5677899999999988764322
Q ss_pred hHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHH
Q 000145 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGA 705 (2054)
Q Consensus 626 ~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~n 705 (2054)
|..+.. -...++.++.-+ +++-+|-.|++|+..++...-.+-..-.-..+++.+...++......+.....++-.
T Consensus 603 -D~l~~e--L~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~ 677 (1233)
T KOG1824|consen 603 -DFLGNE--LPRTLPILLERL--GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDK 677 (1233)
T ss_pred -hhhhhh--hHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 111233344433 588899999999999987322222222334677888888887777777777777766
Q ss_pred hhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCH------
Q 000145 706 LSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTS------ 779 (2054)
Q Consensus 706 Ls~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~------ 779 (2054)
|...-. +.......+. ++..+..++...+..+.+.|+..|+.+...+....--.....++.++.++++.--
T Consensus 678 L~~~~~--~~~~~~~~e~-vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~ 754 (1233)
T KOG1824|consen 678 LVKNYS--DSIPAELLEA-VLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALS 754 (1233)
T ss_pred HHHHHh--ccccHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHH
Confidence 654111 1111122221 4445566677777888888999998886644332222233334444444432211
Q ss_pred ----------------------------------------HHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhh
Q 000145 780 ----------------------------------------EGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSL 819 (2054)
Q Consensus 780 ----------------------------------------evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL 819 (2054)
+.-..-+.|.+.|+...| + .....+.+|+.-+
T Consensus 755 ~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~--~------~s~s~a~kl~~~~ 826 (1233)
T KOG1824|consen 755 ALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACP--Q------KSKSLATKLIQDL 826 (1233)
T ss_pred HHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhcc--c------cchhHHHHHHHHH
Confidence 111112222222222211 0 0123445555555
Q ss_pred ccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccC
Q 000145 820 NAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 820 ~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
.+.+.....+.-|+-.+|-+.+-+. . ...+..-..+++.+.+++.+++..|..+|+++-..+
T Consensus 827 ~s~~s~~~ikvfa~LslGElgr~~~-----~------s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn 888 (1233)
T KOG1824|consen 827 QSPKSSDSIKVFALLSLGELGRRKD-----L------SPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN 888 (1233)
T ss_pred hCCCCchhHHHHHHhhhhhhccCCC-----C------CcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc
Confidence 5444444445555555555543211 1 001223457789999999999999999999987655
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.3e-08 Score=113.38 Aligned_cols=196 Identities=21% Similarity=0.233 Sum_probs=161.8
Q ss_pred cchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCcc
Q 000145 386 FDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG 465 (2054)
Q Consensus 386 ~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e 465 (2054)
+....+ +.|+.+++...++.+++.+..++++.+..+..+..+.+.|+++.+..++.++++.++..|..++.+++.. .+
T Consensus 9 l~~~~l-~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQEL-QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHH-HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 444444 6778888877666799999999999999999999999999999999999999999999999999999887 56
Q ss_pred chhhhhccccHHHHHhhhcCC--ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHH
Q 000145 466 IWEAIGKREGIQLLISLLGLS--SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL 543 (2054)
Q Consensus 466 ~r~~Ive~ggIp~LV~LL~s~--d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nL 543 (2054)
++..|- ..++.+.+...+. +..+|..++++|.||+. .++++..+. +.++.++.+|.+++..+|.++.++|.||
T Consensus 87 n~~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv-~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 87 NQEQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV-TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred hHHHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC-CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 666662 3566666644433 67899999999999987 455555553 4799999999999999999999999999
Q ss_pred hcCChhHHHHHHHcCChHHHHHhhccC-ChhHHHHHHHHHHHHHHhh
Q 000145 544 CCHSEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAA 589 (2054)
Q Consensus 544 a~~sd~~r~~I~e~GaI~aLV~LLkS~-~~evq~~AA~AL~nLs~~~ 589 (2054)
+.+.+..++++ ..+++..++.++... +.+....+.+...|+..+-
T Consensus 162 S~np~~~~~Ll-~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 162 SENPDMTRELL-SAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred ccCHHHHHHHH-hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 99655556665 467899999998775 6788899999999998763
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.3e-05 Score=100.21 Aligned_cols=515 Identities=12% Similarity=0.043 Sum_probs=311.8
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHH-HHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCCh
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAA-TLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDH 161 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~-vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~ 161 (2054)
.|-+..|-..|++++..-+.++.+ ++..++.+.+.- .+++.+++++.++|.++++-+.-.|.+.+.. .+
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~----~p 100 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARL----QP 100 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHccc----Ch
Confidence 456777888888887776666665 557776665443 3567788888889999999999999998852 22
Q ss_pred hHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHH
Q 000145 162 VGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2054)
Q Consensus 162 ~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~ 241 (2054)
+ ...+ ++..|.+=+.+++ +.++..|+++|.++.... +.+ -.+..+.+.+.+.++.||..|+.++.
T Consensus 101 e-lalL----aINtl~KDl~d~N---p~IRaLALRtLs~Ir~~~------i~e-~l~~~lkk~L~D~~pYVRKtAalai~ 165 (746)
T PTZ00429 101 E-KALL----AVNTFLQDTTNSS---PVVRALAVRTMMCIRVSS------VLE-YTLEPLRRAVADPDPYVRKTAAMGLG 165 (746)
T ss_pred H-HHHH----HHHHHHHHcCCCC---HHHHHHHHHHHHcCCcHH------HHH-HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1 1112 5677777666554 678988888888775522 221 13556677788889999999999999
Q ss_pred HHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhh
Q 000145 242 RLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQ 321 (2054)
Q Consensus 242 nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~ 321 (2054)
++...+++ .+.+.+.++.|..++. +.+..+...|..+|..+...+++.- -...+.+..|+..+.+-+.+
T Consensus 166 Kly~~~pe---lv~~~~~~~~L~~LL~-D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW----- 234 (746)
T PTZ00429 166 KLFHDDMQ---LFYQQDFKKDLVELLN-DNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPECNEW----- 234 (746)
T ss_pred HHHhhCcc---cccccchHHHHHHHhc-CCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcCChH-----
Confidence 99866653 2345678888999887 6788999999998888865422110 00011111111111111100
Q ss_pred hhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCC
Q 000145 322 RGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKP 401 (2054)
Q Consensus 322 ~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~ 401 (2054)
T Consensus 235 -------------------------------------------------------------------------------- 234 (746)
T PTZ00429 235 -------------------------------------------------------------------------------- 234 (746)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccC-ccchhhhhccccHHHHH
Q 000145 402 HDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRRE-VGIWEAIGKREGIQLLI 480 (2054)
Q Consensus 402 ~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s-~e~r~~Ive~ggIp~LV 480 (2054)
.|......|.. +...+ ... ....+..+...+++.++.+...++.++.++.... ++....... ...++++
T Consensus 235 -----~Qi~IL~lL~~-y~P~~-~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv 304 (746)
T PTZ00429 235 -----GQLYILELLAA-QRPSD-KES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALL 304 (746)
T ss_pred -----HHHHHHHHHHh-cCCCC-cHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHH
Confidence 11111111110 00000 000 0134455667778888888999998888887542 121111111 1225567
Q ss_pred hhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCh
Q 000145 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2054)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI 560 (2054)
.++ ++++++|-.++..+..+....+ .+.... +..+.-. .++...++.....+|..|+.. +..... +
T Consensus 305 ~L~-ss~~eiqyvaLr~I~~i~~~~P----~lf~~~-~~~Ff~~-~~Dp~yIK~~KLeIL~~Lane-~Nv~~I------L 370 (746)
T PTZ00429 305 TLS-RRDAETQYIVCKNIHALLVIFP----NLLRTN-LDSFYVR-YSDPPFVKLEKLRLLLKLVTP-SVAPEI------L 370 (746)
T ss_pred Hhh-CCCccHHHHHHHHHHHHHHHCH----HHHHHH-HHhhhcc-cCCcHHHHHHHHHHHHHHcCc-ccHHHH------H
Confidence 664 5677888888888877766332 222221 2222222 233456899999999999863 222222 3
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhccc
Q 000145 561 PAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637 (2054)
Q Consensus 561 ~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~G 637 (2054)
.-|.+...+.+.+.+..+..++++++..-. ...+..|++++..... +..++..++..+...-+.. .
T Consensus 371 ~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~----------~ 439 (746)
T PTZ00429 371 KELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPEL----------L 439 (746)
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccH----------H
Confidence 556666678888999999999999987522 3567888888876443 3344555565554322211 1
Q ss_pred chHHHHHHh---ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCccc
Q 000145 638 GLRSLVQVL---NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2054)
Q Consensus 638 aI~~LV~LL---ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d 714 (2054)
.+..|+... .-.+++.|...+|+|...+.. -++. ...+..++.-..+.++.+|.....+..++....+.
T Consensus 440 il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~-I~~a-----~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~p~-- 511 (746)
T PTZ00429 440 MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDF-IENG-----KDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRDPQ-- 511 (746)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHHhhHhh-HhhH-----HHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcCcH--
Confidence 244555433 124788999999999998762 2221 12344444444567888999988889988874443
Q ss_pred chhHHHHhcCChhhHHhhh-h-cCCHHHHHHHHHHHHHhhCCh--HHHHHHH
Q 000145 715 TNKMSYIAEGDVKPLIKLA-K-TSSIDAAETAVAALANLLSDP--DIAAEVL 762 (2054)
Q Consensus 715 ~~r~~I~~~gaV~~Lv~LL-~-s~d~~Vre~Al~AL~NLa~~~--e~r~~Iv 762 (2054)
..+. .+..++..+ + +.++++|..|..-..-|..++ +..++++
T Consensus 512 ~~~~------~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~~~~a~~iv 557 (746)
T PTZ00429 512 GMEP------QLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGITVAQMKKVV 557 (746)
T ss_pred HHHH------HHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 2221 334455433 3 477899999988777666554 3334554
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=103.02 Aligned_cols=118 Identities=33% Similarity=0.398 Sum_probs=109.7
Q ss_pred hhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCCh
Q 000145 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE 548 (2054)
Q Consensus 469 ~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd 548 (2054)
.+++.|+++.+++++.+++..++..++.+|++++..+++.+..+.+.|+++.++++|.++++.++..++++|++|+.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 35678999999999999999999999999999999778888888899999999999999999999999999999999877
Q ss_pred hHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHH
Q 000145 549 DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLI 586 (2054)
Q Consensus 549 ~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs 586 (2054)
..+..+.+.|.++.|++++.+.+.++++.++++|.+++
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 78888888999999999999999999999999999986
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.9e-06 Score=109.24 Aligned_cols=391 Identities=13% Similarity=0.060 Sum_probs=254.7
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHH-HhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhh
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMA-SLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~-~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Iv 471 (2054)
.-|...|+..+.. .+..+.+-+. .+..+.++. ....-.+.++.+.+.++++-.-.+|.+.+..+++.. +
T Consensus 35 ~ELr~~L~s~~~~-~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--l- 104 (746)
T PTZ00429 35 AELQNDLNGTDSY-RKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--L- 104 (746)
T ss_pred HHHHHHHHCCCHH-HHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--H-
Confidence 4455556665543 4445554333 332222222 234556778888888888888888888876544432 1
Q ss_pred ccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHH
Q 000145 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2054)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r 551 (2054)
-.++.+.+=++++|+.+|..|++.++++... + +.+ -.++++.+.|.+.++-||..|+-++.++-..++
T Consensus 105 --LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~--~----i~e-~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--- 172 (746)
T PTZ00429 105 --LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS--S----VLE-YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--- 172 (746)
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH--H----HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---
Confidence 2467788888899999999999998887651 1 111 145667788889999999999999999865333
Q ss_pred HHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc
Q 000145 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ 625 (2054)
Q Consensus 552 ~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~ 625 (2054)
+.+.+.+.++.|.+++.+.++.+..+|..+|..+..... ...+..++..+.+-++-.+..+.+.|... .+.+.
T Consensus 173 elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y-~P~~~ 251 (746)
T PTZ00429 173 QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQ-RPSDK 251 (746)
T ss_pred ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc-CCCCc
Confidence 334456788889999999999999999999999975421 23344455555555566666666666431 11112
Q ss_pred hHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcC-hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000145 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMR-QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2054)
Q Consensus 626 ~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~-~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~ 704 (2054)
.+. ...+..+...+++.|+.+.-.|++++.++.... ++....+ -....++++.++ +++++++-.+.+.|.
T Consensus 252 ~e~-------~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~-~~rl~~pLv~L~-ss~~eiqyvaLr~I~ 322 (746)
T PTZ00429 252 ESA-------ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERC-TVRVNTALLTLS-RRDAETQYIVCKNIH 322 (746)
T ss_pred HHH-------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH-HHHHHHHHHHhh-CCCccHHHHHHHHHH
Confidence 111 235778888899999999999999999997532 2211111 112336667664 567788888888887
Q ss_pred HhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHH
Q 000145 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKN 784 (2054)
Q Consensus 705 nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~ 784 (2054)
-+....+ .+.... +..+....+ +...++...+..|..|+... +...| +..|..+..+.+.++++.
T Consensus 323 ~i~~~~P-------~lf~~~-~~~Ff~~~~-Dp~yIK~~KLeIL~~Lane~-Nv~~I-----L~EL~eYa~d~D~ef~r~ 387 (746)
T PTZ00429 323 ALLVIFP-------NLLRTN-LDSFYVRYS-DPPFVKLEKLRLLLKLVTPS-VAPEI-----LKELAEYASGVDMVFVVE 387 (746)
T ss_pred HHHHHCH-------HHHHHH-HHhhhcccC-CcHHHHHHHHHHHHHHcCcc-cHHHH-----HHHHHHHhhcCCHHHHHH
Confidence 7765222 122221 233333333 34568999999999998533 33333 356778888899999999
Q ss_pred HHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 785 ASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 785 Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
++.++++++...+. . ....+..|+++++.+. +. ..+++.++..+-+
T Consensus 388 aIrAIg~lA~k~~~---~-----a~~cV~~Ll~ll~~~~-~~--v~e~i~vik~Ilr 433 (746)
T PTZ00429 388 VVRAIASLAIKVDS---V-----APDCANLLLQIVDRRP-EL--LPQVVTAAKDIVR 433 (746)
T ss_pred HHHHHHHHHHhChH---H-----HHHHHHHHHHHhcCCc-hh--HHHHHHHHHHHHH
Confidence 99999999975421 1 1446777888886432 22 4456666666643
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.7e-06 Score=103.85 Aligned_cols=623 Identities=17% Similarity=0.139 Sum_probs=331.7
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHc--------CcHHHHHHhhCCCCCCChhHHHHHHH
Q 000145 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE--------GVVPTLWDQLNPKNKQDNVVQGFVTG 196 (2054)
Q Consensus 125 GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~a--------G~Vp~Lv~LL~s~s~~d~~V~e~Al~ 196 (2054)
.++|.|..+|.++|....+.|.++|..++.+. . .+.+. =.+|.++++.+.++ +.++.+|++
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-------a-~~lds~~~~rpl~~mipkfl~f~~h~s---pkiRs~A~~ 196 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDS-------A-QFLDSDVLTRPLNIMIPKFLQFFKHPS---PKIRSHAVG 196 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhh-------H-HHHhhhcccCchHHhHHHHHHHHhCCC---hhHHHHHHh
Confidence 45789999999999899999999999999631 1 12222 26789999988775 568888888
Q ss_pred HHHHHhcCCCchhHHHHh-hCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhH
Q 000145 197 ALRNLCGDKDGYWRATLE-AGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISV 275 (2054)
Q Consensus 197 aL~nL~~~~e~r~~aI~e-aGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~V 275 (2054)
++-..--.... ..+.+ ..-++.+-.+-.++++++|.+.|++|.-|....++..... -.+.+.+.++.-+ +.|.++
T Consensus 197 cvNq~i~~~~q--al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tq-d~dE~V 272 (885)
T KOG2023|consen 197 CVNQFIIIQTQ--ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQ-DVDENV 272 (885)
T ss_pred hhhheeecCcH--HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHcc-CcchhH
Confidence 87765443221 11111 1234555666677889999999999998885444322221 2357777777776 577788
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHh--cCCHHHHHHhhcCCchhhh--h--------hhhhhhhhhHHHHHHHHHhcCchh
Q 000145 276 RASAADALEALSSKSIKAKKAVVA--ADGVPVLIGAIVAPSKECM--Q--------GQRGQALQGHATRALANIYGGMPA 343 (2054)
Q Consensus 276 r~~Aa~aL~nLs~~s~e~Rk~I~e--aggL~~LIeLL~s~s~e~~--q--------~~~~~~lqe~Al~ALanLsGgis~ 343 (2054)
...|++....++.. +.++..+.. ...+|.|+.-+.-...+.. . ....+.++-+-...=....++...
T Consensus 273 ALEACEFwla~aeq-pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~ 351 (885)
T KOG2023|consen 273 ALEACEFWLALAEQ-PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDAD 351 (885)
T ss_pred HHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccc
Confidence 88999988888884 566555543 4566666654432221100 0 000000000000000000000000
Q ss_pred -------HHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHH
Q 000145 344 -------LVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMA 416 (2054)
Q Consensus 344 -------lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~ 416 (2054)
..+ =.+....=+.++..|..+..+++... .+.+ + .+-++|...+.+ +...+|+..+-++|
T Consensus 352 ~eDdddDe~D-DdD~~~dWNLRkCSAAaLDVLanvf~---------~elL-~-~l~PlLk~~L~~-~~W~vrEagvLAlG 418 (885)
T KOG2023|consen 352 DEDDDDDEDD-DDDAFSDWNLRKCSAAALDVLANVFG---------DELL-P-ILLPLLKEHLSS-EEWKVREAGVLALG 418 (885)
T ss_pred cccccccccc-cccccccccHhhccHHHHHHHHHhhH---------HHHH-H-HHHHHHHHHcCc-chhhhhhhhHHHHH
Confidence 000 00000000012333444444443210 0000 1 223556666655 45568999999999
Q ss_pred HhhcChhhhHHHhh--cchHHHHHHHhccCCHHHHHHHHHHHHHhcccCc-cchhhhhccccHHHHHhhhcCCChhhhHH
Q 000145 417 SLYGNIFLSQWVSH--AEAKKVLIGLITMATADVREYLILSLTKLCRREV-GIWEAIGKREGIQLLISLLGLSSEQHQEY 493 (2054)
Q Consensus 417 ~L~~n~~~~~~L~~--~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~-e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~ 493 (2054)
.++..-- +-+.. ...++.+++++.+..+-++.-.+++|...+..-. +.++... ...+..|++.+-+++..+|+.
T Consensus 419 AIAEGcM--~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-~pvL~~ll~~llD~NK~VQEA 495 (885)
T KOG2023|consen 419 AIAEGCM--QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-KPVLEGLLRRLLDSNKKVQEA 495 (885)
T ss_pred HHHHHHh--hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh-HHHHHHHHHHHhcccHHHHHH
Confidence 9864321 11111 1467899999999999999999999888765310 1111111 123445556566789999999
Q ss_pred HHHHHHHHhhhccchhhHHHhhCCCchHhhhhh----------cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHH
Q 000145 494 AVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE----------AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2054)
Q Consensus 494 Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~----------s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aL 563 (2054)
|+.++..+-....+ .-+|.|-.+|. ..+-.+.-.|.++|+.=..+.-..++.+ .-.+|+|
T Consensus 496 AcsAfAtleE~A~~--------eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yi--qiLmPPL 565 (885)
T KOG2023|consen 496 ACSAFATLEEEAGE--------ELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYI--QILMPPL 565 (885)
T ss_pred HHHHHHHHHHhccc--------hhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHH--HHhccHH
Confidence 99998877542111 12233323322 2244455667777765543211112211 2246777
Q ss_pred H---HhhccCChhHHHHHHHHHHHHHHhhc-----------hh---hHHHHHHH-hcCCC-c-------chHHHHHHHHH
Q 000145 564 L---WLLKSGGPKGQDASAMALTKLIRAAD-----------SA---TINQLLAL-LLGDS-P-------SSKAHVIKVLG 617 (2054)
Q Consensus 564 V---~LLkS~~~evq~~AA~AL~nLs~~~e-----------~~---~Ip~Lv~L-L~~~~-~-------~V~~~a~~AL~ 617 (2054)
+ ++++++++++ .--..+|..++..-. .+ .+..-.++ .+... + +.-.-+..-+.
T Consensus 566 i~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~S 644 (885)
T KOG2023|consen 566 IEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLS 644 (885)
T ss_pred HHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHh
Confidence 7 3677777653 122233333332211 01 11111111 11111 1 00001122222
Q ss_pred HHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHH
Q 000145 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697 (2054)
Q Consensus 618 ~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~ 697 (2054)
-|+... .......+...+..+.+...+.+.-+++|+.+...|..++....+...- .-.+.++-+-.-+....-.+..
T Consensus 645 GLaegL--g~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p-~~~~fl~~lg~Nl~~~~isv~n 721 (885)
T KOG2023|consen 645 GLAEGL--GSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIP-NLADFLPILGANLNPENISVCN 721 (885)
T ss_pred HHHHHh--hhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHhhcCChhhchHHH
Confidence 222111 1122333455666777777888889999999999999997632211100 0012222222223334456888
Q ss_pred HHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHH
Q 000145 698 QSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVL 774 (2054)
Q Consensus 698 ~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL 774 (2054)
+|.||++.++..... ..+ ..-.-++..|+..++. .+..+.++.+-+++.|.. +|+.-.-..+ ..+.+-..-+
T Consensus 722 NA~WAiGeia~k~g~--~~~--~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp~l~-~f~~pWc~sl 796 (885)
T KOG2023|consen 722 NAIWAIGEIALKMGL--KMK--QYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAPHLD-SFMRPWCTSL 796 (885)
T ss_pred HHHHHHHHHHHHhch--hhh--hHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcchhHH-HHHHHHHHHh
Confidence 999999999862211 122 1122245556666665 345677788888888875 5554322111 1233333333
Q ss_pred c-CCCHHHHHHHHHHHHHhhhcCCC
Q 000145 775 A-EGTSEGKKNASRALHQLLKHFPV 798 (2054)
Q Consensus 775 ~-s~~~evr~~Aa~AL~nL~~~~~~ 798 (2054)
+ -++.+-|+.|-+-++++..-.|.
T Consensus 797 ~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 797 RNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred cccccchhHHHHHHHHHHheeeCch
Confidence 3 24677899999999999887664
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.5e-08 Score=100.28 Aligned_cols=118 Identities=27% Similarity=0.322 Sum_probs=106.0
Q ss_pred hhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 674 SLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 674 ~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
.+++.|+++.++++++++++.++..++++|++++...+ ..+..+.+.|+++.+++++.++++.++..++++|+||+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~---~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNN---DNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCH---HHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence 35678999999999999999999999999999997433 566778888999999999999999999999999999998
Q ss_pred Ch-HHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 000145 754 DP-DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 754 ~~-e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~ 794 (2054)
++ ..+..+.+.|.++.|++++.+++.++++.++++|.+|+.
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 65 556678889999999999999999999999999999873
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.0009 Score=86.37 Aligned_cols=761 Identities=13% Similarity=0.095 Sum_probs=370.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHHHH-hc-cCchhHHHHHhc---
Q 000145 52 MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSV-LC-KDEDLRLKVLLG--- 124 (2054)
Q Consensus 52 sss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL~~-Ls-~~ee~r~~v~~~--- 124 (2054)
+.+.-.+..|=..|..++..+ ..+++..|...|.+. ++..|..|.-.|+| |+ ++++.+......
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~n---------f~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~ 82 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQN---------FPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQ 82 (859)
T ss_pred CCCcchHHHHHHHHHHHHhcc---------HHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHc
Confidence 455566777878888877765 245677777777764 45666666666655 44 444443333221
Q ss_pred ------CChH-HHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCC--CChhHHHHHH
Q 000145 125 ------GCIP-PLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNK--QDNVVQGFVT 195 (2054)
Q Consensus 125 ------GaIp-~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~--~d~~V~e~Al 195 (2054)
.-|+ -+++-|++..|.....|++++..++.-+.+ .+.-|-|+..|.+.-. +...+.+..+
T Consensus 83 l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP-----------~n~wp~li~~lv~nv~~~~~~~~k~~sl 151 (859)
T KOG1241|consen 83 LPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELP-----------QNQWPELIVTLVSNVGEEQASMVKESSL 151 (859)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCc-----------hhhCHHHHHHHHHhcccccchHHHHHHH
Confidence 1122 334667767778888889999888864321 1233444444432211 1124788999
Q ss_pred HHHHHHhcCCCchhHHHHhhCChHHHHhhhcc--CCHHHHHHHHHHHHHHH-hhcCCCcchhcccch-HHHHHHHhccCC
Q 000145 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSS--DNAAAQSNAASLLARLM-LAFGDSIPTVIDSGA-VKALVQLVGQNN 271 (2054)
Q Consensus 196 ~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s--~s~evq~~A~~aL~nLs-~~~~~~r~~i~~sGa-L~~LL~LL~s~~ 271 (2054)
.+|+.+|.+-+.....-.....+-.++.-... ++..+|..|..+|.+=. .....+..+. +.+. ....+.. .+++
T Consensus 152 ealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~-ern~iMqvvcEa-tq~~ 229 (859)
T KOG1241|consen 152 EALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEM-ERNYIMQVVCEA-TQSP 229 (859)
T ss_pred HHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHh-hhceeeeeeeec-ccCC
Confidence 99999999876541111112345556665544 46789999999998744 1111111111 1111 1112222 2367
Q ss_pred ChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhh
Q 000145 272 DISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGEL 351 (2054)
Q Consensus 272 d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~el 351 (2054)
|.+++..|..+|..+-+-.-+.-+......-...-+..+.++..+ +...+++==++++..--.+--..++.
T Consensus 230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~de---------ValQaiEFWsticeEEiD~~~e~~e~ 300 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDE---------VALQAIEFWSTICEEEIDLAIEYGEA 300 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999888887653222222222222222334444443322 11122222222331000000001111
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccch---hhHHHHHHHHcCCCC------hhhHHHHHHHHHHHhh--c
Q 000145 352 SQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDA---RQIEDILVMLLKPHD------NKLVQERVLEAMASLY--G 420 (2054)
Q Consensus 352 L~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~---~gIe~~Lv~LLk~~~------~e~Vq~~Aa~AL~~L~--~ 420 (2054)
...+.. .....|.. ..+.|.|..++...+ +...-..+..+|.-.+ .
T Consensus 301 ~d~~~~-----------------------p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~ 357 (859)
T KOG1241|consen 301 VDQGLP-----------------------PSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV 357 (859)
T ss_pred hhcCCC-----------------------chhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh
Confidence 110000 00111111 134466666554421 1113333334443331 1
Q ss_pred ChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHH
Q 000145 421 NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAI 500 (2054)
Q Consensus 421 n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~n 500 (2054)
.++ ++. ..++++-.-+++.+-.-+..++.+++..-......+..-...+++|.++.++.+++-.++..++|.|+.
T Consensus 358 ~D~----Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgr 432 (859)
T KOG1241|consen 358 GDD----IVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGR 432 (859)
T ss_pred ccc----chh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHH
Confidence 111 111 334444446677888888888899888766534444333345889999999998888899999999999
Q ss_pred HhhhccchhhHHHhhCCCchHhhhhh---cCCHHHHHHHHHHHHHHhcCChhHHHHHHHc-------CChHHHHH-hhcc
Q 000145 501 LTEQVDDSKWAITAAGGIPPLVQLLE---AGSQKAREVAAHVLWILCCHSEDIRACVESA-------GAVPAFLW-LLKS 569 (2054)
Q Consensus 501 Ls~~s~e~r~~I~~aGaIp~LV~LL~---s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~-------GaI~aLV~-LLkS 569 (2054)
++.+.++. +...--.+.++..|- +..|.+-.+++|++.+|+.. ..+...+. ...+.++. |++-
T Consensus 433 I~d~l~e~---~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea---~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 433 IADFLPEA---IINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEA---AYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred HHhhchhh---cccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHH---HHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 99865532 222222333444333 23789999999999999742 11111111 11222222 2321
Q ss_pred ------CChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHH
Q 000145 570 ------GGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLV 643 (2054)
Q Consensus 570 ------~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV 643 (2054)
.....|..+=.+|..+.........+.+.++...- -...-. .++ -
T Consensus 507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~i----l~kl~q-----------------------~i~--~ 557 (859)
T KOG1241|consen 507 TDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVI----LEKLDQ-----------------------TIS--S 557 (859)
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH----HHHHHH-----------------------HHH--H
Confidence 12245555555666555443222222211111100 000000 000 0
Q ss_pred HHhccCC----HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCcccchhH
Q 000145 644 QVLNSSN----EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSRPTKTKTTNKM 718 (2054)
Q Consensus 644 ~LLks~s----~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d-gs~~vr~~AA~AL~nLs~s~~~~d~~r~ 718 (2054)
+.+...+ .+++..-+..|..+...-...+ .-.....+..+++++.+ ++..+.+.|-.+++.+..+.. .+.
T Consensus 558 ~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~-~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg----~~F 632 (859)
T KOG1241|consen 558 QILSLADRAQLNELQSLLCNTLQSIIRKVGSDI-REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLG----KGF 632 (859)
T ss_pred HhccHhhHHHHHHHHHHHHHHHHHHHHHccccc-hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHh----HhH
Confidence 1111111 2333344444444433212211 11223456667777776 444566777777766665221 111
Q ss_pred HHHhcCChhhHHhhh-hcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhhc
Q 000145 719 SYIAEGDVKPLIKLA-KTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG--TSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 719 ~I~~~gaV~~Lv~LL-~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~--~~evr~~Aa~AL~nL~~~ 795 (2054)
.-.-....|.|..-| +..+-.|...|++..+.|+..=+..-...-.+....|++.|.+. |..+|-....+.+.++..
T Consensus 633 ~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAla 712 (859)
T KOG1241|consen 633 AKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALA 712 (859)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHH
Confidence 112233555566666 33555666678888887764111100112334667888888776 456676666676666542
Q ss_pred CCCchhHhhhhhhhhhHHHHHHhhcc---C-----CCCc-----hhHHHHHHHHHHHh-hcccCCCccCCcccccccCCC
Q 000145 796 FPVGDVLKGNAQCRFVVLTLVDSLNA---M-----DMNG-----TDVADALEVVALLA-RTKQGLNFTYPPWAALAEVPS 861 (2054)
Q Consensus 796 ~~~~e~i~~~i~~~g~v~~LV~LL~s---g-----~~~~-----~~~~~AL~ALa~La-~~~~~~~~i~~~~~~~~~~~~ 861 (2054)
+.+.+.. .+...+.+++. . +.+. ..+..++++-.-+- .-+...... ...|
T Consensus 713 ------Ig~~F~~--Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~-------~~~p- 776 (859)
T KOG1241|consen 713 ------IGADFEP--YLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVM-------LVQP- 776 (859)
T ss_pred ------HHHhHHH--HHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchh-------hhhc-
Confidence 2222222 22223333321 1 1111 13333333322221 111000000 0011
Q ss_pred chHHHHHhhh---cCC---hhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhhhH
Q 000145 862 SIEPLVCCLA---EGP---PPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAA 928 (2054)
Q Consensus 862 ~L~~Lv~ll~---~~~---~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~ 928 (2054)
.++.++.+.. ... ..+-..|+-.+..++..++.-..++.. .+.||..++.+-..+.....|.-+.+
T Consensus 777 ~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~~~~-~~~~i~~~L~~~~k~~~~~tK~~A~w 848 (859)
T KOG1241|consen 777 YVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIKLFL-DEDWIKDFLNEGRKSSTQKTKDLARW 848 (859)
T ss_pred chHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhhhhc-chHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 2344444433 221 226777888888888887653333332 35799999988776665555554444
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00013 Score=92.47 Aligned_cols=608 Identities=13% Similarity=0.114 Sum_probs=312.0
Q ss_pred cCcHHHHHHHHcc----C-CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCC
Q 000145 83 AQAMPLFISILRS----G-TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGL 157 (2054)
Q Consensus 83 aGgVp~LV~LLks----~-s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~ 157 (2054)
+=|||.|+.+|++ . +.+.|.-+.++...+|.--.....-...+.+..+-+.|.++...+|..++.+|..|+...
T Consensus 506 algip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa- 584 (1172)
T KOG0213|consen 506 ALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAA- 584 (1172)
T ss_pred HhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhc-
Confidence 4466766666644 2 455555555555544321100000001133344445566678889999999998888631
Q ss_pred CCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHH
Q 000145 158 SDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAA 237 (2054)
Q Consensus 158 nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~ 237 (2054)
.+-+.+.|-. ++..||+=...+. ++. ...-+.+++.||..-+.........-.+-.+.+-..+++.+.+...+
T Consensus 585 --~Pygie~fDs--VlkpLwkgir~hr--gk~-laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivL 657 (1172)
T KOG0213|consen 585 --TPYGIEQFDS--VLKPLWKGIRQHR--GKE-LAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVL 657 (1172)
T ss_pred --CCcchHHHHH--HHHHHHHHHHHcc--ChH-HHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHH
Confidence 2223333322 5666776665443 222 33456777777766554433333333455566666778889999999
Q ss_pred HHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHH--HHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCch
Q 000145 238 SLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAAD--ALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSK 315 (2054)
Q Consensus 238 ~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~--aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~ 315 (2054)
.++.+.|..+. .-........++.+...+-. ++.|.+ .-+.+.....+..+.+--...+..++.-+.+.+.
T Consensus 658 KVv~qcc~t~G-v~~~y~r~dilp~ff~~fw~------rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e 730 (1172)
T KOG0213|consen 658 KVVKQCCATDG-VEPAYIRFDILPEFFFSFWG------RRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPE 730 (1172)
T ss_pred HHHHHHhcccC-CCHHHHhhhhhHHHHhhhhh------hhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccH
Confidence 99988884322 22334455566776655431 222210 0011110000111111111122233333333332
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCc-hhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHH
Q 000145 316 ECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL-AAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI 394 (2054)
Q Consensus 316 e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~-~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~ 394 (2054)
. .+.-+.+...++.+.++.. .. ....-..+..++|+..
T Consensus 731 ~---------yrkm~~etv~ri~~~lg~~-----------diderleE~lidgil~Afq--------------------- 769 (1172)
T KOG0213|consen 731 Q---------YRKMVAETVSRIVGRLGAA-----------DIDERLEERLIDGILYAFQ--------------------- 769 (1172)
T ss_pred H---------HHHHHHHHHHHHHhccccc-----------cccHHHHHHHHHHHHHHHH---------------------
Confidence 2 2222333333333211110 00 0000111222222221
Q ss_pred HHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhh------cchHHHHHHHhccCCHHHHHHHHHHHHHhcccC--ccc
Q 000145 395 LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH------AEAKKVLIGLITMATADVREYLILSLTKLCRRE--VGI 466 (2054)
Q Consensus 395 Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~------~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s--~e~ 466 (2054)
.....+.+.... + +.+.+.+.. ...+..++..|.+.++.++..|+..+..++.-- ..-
T Consensus 770 -----eqtt~d~vml~g---f------g~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~e 835 (1172)
T KOG0213|consen 770 -----EQTTEDSVMLLG---F------GTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGE 835 (1172)
T ss_pred -----hcccchhhhhhh---H------HHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccH
Confidence 111111111111 1 111112211 122344566788889999999998888776421 111
Q ss_pred hhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcC
Q 000145 467 WEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH 546 (2054)
Q Consensus 467 r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~ 546 (2054)
-..+...|. .|.+.+....+++--..+.+++.+.....-.+..---.+.+|.|.-+|++...++++++...++.++..
T Consensus 836 e~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iadr 913 (1172)
T KOG0213|consen 836 EKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADR 913 (1172)
T ss_pred HHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhc
Confidence 112222222 356677778888777667777666653221222122357889999999999999999999999999875
Q ss_pred Chh---HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000145 547 SED---IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2054)
Q Consensus 547 sd~---~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~ 622 (2054)
..+ .|+.+. .---|+++|++.+.++|+.+..+++.++...- ..++..|+.-|+..+.+.+.-..-+++..+.
T Consensus 914 gpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE- 989 (1172)
T KOG0213|consen 914 GPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAE- 989 (1172)
T ss_pred CcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhh-
Confidence 544 233332 12347789999999999999999999986632 2344444444443332222222222222211
Q ss_pred hcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHH
Q 000145 623 ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARA 702 (2054)
Q Consensus 623 ~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~A 702 (2054)
...--.++++|.+=-+.++..++.....+|+.++..-.+.... .-..+.|-|-..|.+.+..-|.-|+.+
T Consensus 990 ---------~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~Feyigemskd-Yiyav~PlleDAlmDrD~vhRqta~~~ 1059 (1172)
T KOG0213|consen 990 ---------TCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKD-YIYAVTPLLEDALMDRDLVHRQTAMNV 1059 (1172)
T ss_pred ---------hcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhh-HHHHhhHHHHHhhccccHHHHHHHHHH
Confidence 0001123566666556678899999999998887632221111 112345566667778888888889999
Q ss_pred HHHhhCCCCcccchhHHHHhcCChhhHHhhhh-------cCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHc
Q 000145 703 LGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-------TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA 775 (2054)
Q Consensus 703 L~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~-------s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~ 775 (2054)
+.+++.+.+. .|....++.||+ ..++.+......++-.+. ..+.......-+.+-|+
T Consensus 1060 I~Hl~Lg~~g----------~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r------~~Lg~~~~~~Y~~QGLF 1123 (1172)
T KOG0213|consen 1060 IKHLALGVPG----------TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLR------VALGPQAMLKYCLQGLF 1123 (1172)
T ss_pred HHHHhcCCCC----------cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHH------HHhchHHHHHHHHHhcc
Confidence 9999874332 233344444433 256677665555544332 11111122334445566
Q ss_pred CCCHHHHHHHHHHHHHh
Q 000145 776 EGTSEGKKNASRALHQL 792 (2054)
Q Consensus 776 s~~~evr~~Aa~AL~nL 792 (2054)
+....+|..-..++.++
T Consensus 1124 HParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1124 HPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred CcHHHHHHHHHHHHHhH
Confidence 66667776544444333
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.4e-05 Score=94.21 Aligned_cols=272 Identities=12% Similarity=0.125 Sum_probs=180.0
Q ss_pred CchHhhhhhcCCHHHHHHHHHHHHHHhcCChh--HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh------
Q 000145 518 IPPLVQLLEAGSQKAREVAAHVLWILCCHSED--IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA------ 589 (2054)
Q Consensus 518 Ip~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~--~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~------ 589 (2054)
+..+++.|++.++++|.+|+..++.++.--.. -.+.+...| -.|.+.+....|++.-....++..+.+..
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 34566789999999999999999988641111 112232223 23557777888999888888887776653
Q ss_pred --chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhc
Q 000145 590 --DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2054)
Q Consensus 590 --e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~ 667 (2054)
-.+.+|.|...|++..+.|++.+...++.++...+..-..++.++ .---|+++|++.+.++|.+|...+..++..
T Consensus 879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 256789999999999999999988888888755443222222211 123478889999999999999999998762
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHH
Q 000145 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAA 747 (2054)
Q Consensus 668 ~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~A 747 (2054)
+--++++..|+.-|+......|....-+++-.+..+.. -.+++.|.+=-..+...|+.-.+.+
T Consensus 956 -------IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~p----------FtVLPalmneYrtPe~nVQnGVLka 1018 (1172)
T KOG0213|consen 956 -------IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGP----------FTVLPALMNEYRTPEANVQNGVLKA 1018 (1172)
T ss_pred -------cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCc----------hhhhHHHHhhccCchhHHHHhHHHH
Confidence 22234455555555544444444444444444331111 1255666665666888999999999
Q ss_pred HHHhhCC--hHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhc
Q 000145 748 LANLLSD--PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN 820 (2054)
Q Consensus 748 L~NLa~~--~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~ 820 (2054)
|+.+... ...++.+-. ..|.|.+.|.+.|.--|+.|+.++.+|+-+.+. ..|..+.-+|++++=
T Consensus 1019 lsf~FeyigemskdYiya--v~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g-------~g~eda~iHLLN~iW 1084 (1172)
T KOG0213|consen 1019 LSFMFEYIGEMSKDYIYA--VTPLLEDALMDRDLVHRQTAMNVIKHLALGVPG-------TGCEDALIHLLNLIW 1084 (1172)
T ss_pred HHHHHHHHHHHhhhHHHH--hhHHHHHhhccccHHHHHHHHHHHHHHhcCCCC-------cCcHHHHHHHHHHhh
Confidence 9999753 222333333 677788889999999999999999999886421 233445556666653
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00043 Score=89.16 Aligned_cols=622 Identities=16% Similarity=0.157 Sum_probs=333.8
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCch-------
Q 000145 136 SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGY------- 208 (2054)
Q Consensus 136 sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r------- 208 (2054)
++|+.++..|-.-|..++.. +- .+.+..|.+.|...++. ...+..|--.|.|--..++..
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~----nf--------~~F~~~Ls~vl~n~~~~-~~~R~~AGL~LKN~L~akd~~~k~~~~q 78 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQ----NF--------PQFLVLLSEVLANDNSS-DVARMAAGLQLKNSLTAKDPERKQQYQQ 78 (859)
T ss_pred CCCcchHHHHHHHHHHHHhc----cH--------HHHHHHHHHHHhccCCc-HHHHHHHhHHHhhhhccCCHHHHHHHHH
Confidence 35777788888888888752 21 12444555555544422 234444555565544444321
Q ss_pred -hHHHHh---hCChHHHHhhhccCCHHHHHHHHHHHHHHHhh-cCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHH
Q 000145 209 -WRATLE---AGGVDIIVGLLSSDNAAAQSNAASLLARLMLA-FGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADAL 283 (2054)
Q Consensus 209 -~~aI~e---aGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~-~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL 283 (2054)
|..+.. .-.-..+.+-|.++.+.....|..++..++.. -|.. .=.+.+..++..........+++....++
T Consensus 79 RWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n----~wp~li~~lv~nv~~~~~~~~k~~sleal 154 (859)
T KOG1241|consen 79 RWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQN----QWPELIVTLVSNVGEEQASMVKESSLEAL 154 (859)
T ss_pred HHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchh----hCHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 111100 00112233444444455555555555555521 1110 01234444454444333446889999999
Q ss_pred HHHhhccHHHHHHHHh---cCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhh
Q 000145 284 EALSSKSIKAKKAVVA---ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2054)
Q Consensus 284 ~nLs~~s~e~Rk~I~e---aggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~ 360 (2054)
+.++.+ -++. ... ...+-.++.-+... .+...++..|+.||.|--+..
T Consensus 155 Gyice~-i~pe--vl~~~sN~iLtaIv~gmrk~-------e~s~~vRLaa~~aL~nsLef~------------------- 205 (859)
T KOG1241|consen 155 GYICED-IDPE--VLEQQSNDILTAIVQGMRKE-------ETSAAVRLAALNALYNSLEFT------------------- 205 (859)
T ss_pred HHHHcc-CCHH--HHHHHHhHHHHHHHhhcccc-------CCchhHHHHHHHHHHHHHHHH-------------------
Confidence 999885 3332 222 22233333322221 112236666777765532100
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhc--ChhhhHHHhhcchHHHHH
Q 000145 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG--NIFLSQWVSHAEAKKVLI 438 (2054)
Q Consensus 361 iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~--n~~~~~~L~~~g~I~~LI 438 (2054)
-..++ ++..+..+....+ .-...+ +..++..+..+|..+.. .......+. ......-+
T Consensus 206 -----------~~nF~--~E~ern~iMqvvc-----Eatq~~-d~~i~~aa~~ClvkIm~LyY~~m~~yM~-~alfaitl 265 (859)
T KOG1241|consen 206 -----------KANFN--NEMERNYIMQVVC-----EATQSP-DEEIQVAAFQCLVKIMSLYYEFMEPYME-QALFAITL 265 (859)
T ss_pred -----------HHhhc--cHhhhceeeeeee-----ecccCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 00010 1111212211111 112223 33488888888877622 111111111 11223345
Q ss_pred HHhccCCHHHHHHHHHHHHHhcccCccchh---------------hhh---ccccHHHHHhhhcCCChh-------hhHH
Q 000145 439 GLITMATADVREYLILSLTKLCRREVGIWE---------------AIG---KREGIQLLISLLGLSSEQ-------HQEY 493 (2054)
Q Consensus 439 ~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~---------------~Iv---e~ggIp~LV~LL~s~d~~-------Vr~~ 493 (2054)
.-+.+.++++...++..|+++|...-+... ... -.+.+|.|+++|...++. .-+.
T Consensus 266 ~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kA 345 (859)
T KOG1241|consen 266 AAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKA 345 (859)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHH
Confidence 556788899999999999988764222100 000 013567788877543221 4455
Q ss_pred HHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChh
Q 000145 494 AVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPK 573 (2054)
Q Consensus 494 Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~e 573 (2054)
|-.+|.-.+....+ .|+. ..+|.+-+-+++++-.-|+.++.+++.+-...+..+..-.-.+++|.++.++.++.--
T Consensus 346 Ag~CL~l~A~~~~D---~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~ 421 (859)
T KOG1241|consen 346 AGVCLMLFAQCVGD---DIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLW 421 (859)
T ss_pred HHHHHHHHHHHhcc---cchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhh
Confidence 55566555543221 1111 1223333356678889999999999999776665555444589999999999988888
Q ss_pred HHHHHHHHHHHHHHhhc---------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc--hHHHHhhhhcccc----
Q 000145 574 GQDASAMALTKLIRAAD---------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ--EDLVQKGSAANKG---- 638 (2054)
Q Consensus 574 vq~~AA~AL~nLs~~~e---------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~--~d~~~~~l~~~Ga---- 638 (2054)
++..++|+++.++...- ...++.+++-|.+ .|.+...+++++-.|+..... .+.-+.... ...
T Consensus 422 VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~-t~~y~~i 499 (859)
T KOG1241|consen 422 VKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPA-TPFYEAI 499 (859)
T ss_pred hcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCcc-chhHHHH
Confidence 99999999999986621 2344556665654 477888888888888632110 000000000 112
Q ss_pred hHHHHHHhcc---CCHHHHHHHHHHHHHHhhcChhhhhhhhhCC---CHHHHHHHhc-----cCC----HHHHHHHHHHH
Q 000145 639 LRSLVQVLNS---SNEENQEYAASVLADLFSMRQDICGSLATDE---IVNPCMRLLT-----SNT----QMVATQSARAL 703 (2054)
Q Consensus 639 I~~LV~LLks---~s~evre~Aa~ALanLas~~~e~r~~Iv~~g---~V~~Lv~LL~-----dgs----~~vr~~AA~AL 703 (2054)
+..|+..... ...+.|..|-.+|..+....++.+-.++..- +...|-+.++ ..+ ..++..-+.+|
T Consensus 500 i~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~L 579 (859)
T KOG1241|consen 500 IGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTL 579 (859)
T ss_pred HHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHH
Confidence 3333333322 1357899999999999887666655543321 1111212222 111 23455556666
Q ss_pred HHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhCC--hHHHHHHHhcCcHHHHHHHH-cCCCH
Q 000145 704 GALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLSD--PDIAAEVLLEDVVSALTRVL-AEGTS 779 (2054)
Q Consensus 704 ~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~Al~AL~NLa~~--~e~r~~Iv~~g~I~~LV~LL-~s~~~ 779 (2054)
..+.+.... ..+. .....+..++.++.+ .+.-+.++|..+++.|+.+ +...+.+ +...|.|..-| ...+.
T Consensus 580 q~i~rk~~~--~~~~--~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--~~f~pyL~~gL~n~~e~ 653 (859)
T KOG1241|consen 580 QSIIRKVGS--DIRE--VSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--PAFKPYLLMGLSNFQEY 653 (859)
T ss_pred HHHHHHccc--cchh--HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHhhcchHH
Confidence 666652222 1221 122355567777777 4556777888888888652 2222222 23556666555 44467
Q ss_pred HHHHHHHHHHHHhhhcCCCchhHhhhhh--hhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 780 EGKKNASRALHQLLKHFPVGDVLKGNAQ--CRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 780 evr~~Aa~AL~nL~~~~~~~e~i~~~i~--~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
.+...|+..++.|++. ..+.+. +.+....|+..|.+...+...+-..+...|-++.
T Consensus 654 qVc~~aVglVgdl~ra------L~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAl 711 (859)
T KOG1241|consen 654 QVCAAAVGLVGDLARA------LEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIAL 711 (859)
T ss_pred HHHHHHHHHHHHHHHH------HHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHH
Confidence 8899999999999874 233333 3677889999999887777677777777776663
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.6e-06 Score=105.64 Aligned_cols=261 Identities=17% Similarity=0.168 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hhcHHHH-HHHhhhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhccC
Q 000145 38 MSTVAKFLEQLHANMSSPQERELITMRILTIA-KAKKEAR-LLIGSHAQAMPLFISILRSG-TPLAKVNVAATLSVLCKD 114 (2054)
Q Consensus 38 ~~~V~qlIe~L~~ssss~~ere~AL~~L~~La-~~~d~ar-~~I~~~aGgVp~LV~LLks~-s~evr~~AA~vL~~Ls~~ 114 (2054)
-+++.+++..|+..+ ++..+.+++.-|+... ...++.- .+-+ ...||.|+.+|+++ +.++...||+.|..||.-
T Consensus 166 sSk~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv--~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~ev 242 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPV--KSLVPVLVALLSHEHNFDIMLLACRALTYLCEV 242 (1051)
T ss_pred hHHHHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh
Confidence 357888888887654 6666667777776553 3333322 2223 35899999999986 799999999999999854
Q ss_pred -chhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHH
Q 000145 115 -EDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQG 192 (2054)
Q Consensus 115 -ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e 192 (2054)
+++...+++.++||.|+.=|-. +=.++-+.++.+|..|+. .| -+.+.++|++...+..|+--+ ..+++
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR-----~H--~~AiL~AG~l~a~LsylDFFS---i~aQR 312 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR-----RH--PKAILQAGALSAVLSYLDFFS---IHAQR 312 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh-----hc--cHHHHhcccHHHHHHHHHHHH---HHHHH
Confidence 7788888889999999955544 888899999999999996 22 358899999999999887554 34788
Q ss_pred HHHHHHHHHhcCCC-chhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhh---cCCCcchhcccchHHHHHHHhc
Q 000145 193 FVTGALRNLCGDKD-GYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA---FGDSIPTVIDSGAVKALVQLVG 268 (2054)
Q Consensus 193 ~Al~aL~nL~~~~e-~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~---~~~~r~~i~~sGaL~~LL~LL~ 268 (2054)
.|+.+-.|+|..-. .....+.+ .+|.|..+|...+....+.++-++.++... .++.-+.+...|.+....+++.
T Consensus 313 ~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLls 390 (1051)
T KOG0168|consen 313 VALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLS 390 (1051)
T ss_pred HHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHh
Confidence 99999999998732 12233444 799999999999999999999999999853 3444455677888888888885
Q ss_pred cC---CChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCC
Q 000145 269 QN---NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAP 313 (2054)
Q Consensus 269 s~---~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~ 313 (2054)
-. -+..+.......+..++++++..+..+.+.+....|..++...
T Consensus 391 vt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 391 VTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred cCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 21 1234555667778888888899999999888888888877553
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-05 Score=102.72 Aligned_cols=379 Identities=14% Similarity=0.109 Sum_probs=258.8
Q ss_pred HHHHHhc-cCCHHHHHHHHHHHHH-hcccCccchhhhhccccHHHHHhhhcCC-ChhhhHHHHHHHHHHhhhccchhhHH
Q 000145 436 VLIGLIT-MATADVREYLILSLTK-LCRREVGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAI 512 (2054)
Q Consensus 436 ~LI~LL~-ssd~evq~~Aa~AL~~-Ls~~s~e~r~~Ive~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLs~~s~e~r~~I 512 (2054)
.|+.=++ .+++..|..++.-|+. +...+.+.-.-+.-.-.+|.|+.+++.. +.+++..|+++|.+|+...+.....+
T Consensus 171 kLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~v 250 (1051)
T KOG0168|consen 171 KLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIV 250 (1051)
T ss_pred HHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhhee
Confidence 3444343 4478888888876665 4445455544444456789999999865 78899999999999999889999999
Q ss_pred HhhCCCchHhhhh-hcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-
Q 000145 513 TAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD- 590 (2054)
Q Consensus 513 ~~aGaIp~LV~LL-~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e- 590 (2054)
++.++||.|+.-| .-..-++-+++..+|..++.. ..+ .+.+.|++.+.+..+.--+...|+.|..+-.|++....
T Consensus 251 V~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~-AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s 327 (1051)
T KOG0168|consen 251 VDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPK-AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS 327 (1051)
T ss_pred ecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccH-HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999755 455789999999999999863 233 44579999999998888888999999999999997732
Q ss_pred ------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh-hcchHHHHhhhhcccchHHHHHHhccC----CHHHHHHHHH
Q 000145 591 ------SATINQLLALLLGDSPSSKAHVIKVLGHVLTM-ALQEDLVQKGSAANKGLRSLVQVLNSS----NEENQEYAAS 659 (2054)
Q Consensus 591 ------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~-~~~~d~~~~~l~~~GaI~~LV~LLks~----s~evre~Aa~ 659 (2054)
.+.+|.|..+|+..+...-+.++-|+..+... ...++..++ +...|.+.-..+|+.-. +..+....++
T Consensus 328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdq-l~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIr 406 (1051)
T KOG0168|consen 328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQ-LCSHDLITNIQQLLSVTPTILSNGTYTGVIR 406 (1051)
T ss_pred ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHH-HhchhHHHHHHHHHhcCcccccccchhHHHH
Confidence 46789999999998888888888888888754 344444443 56778888888887654 3456667778
Q ss_pred HHHHHhhcChhhhhhhhhCCCHHHHHHHhccCC--------------HHHHHHHHHHHHHhhCCCCc-------------
Q 000145 660 VLADLFSMRQDICGSLATDEIVNPCMRLLTSNT--------------QMVATQSARALGALSRPTKT------------- 712 (2054)
Q Consensus 660 ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs--------------~~vr~~AA~AL~nLs~s~~~------------- 712 (2054)
.|..++++.+..+....+.++...|..+|...+ |.-.-.-..-+..|.-..+.
T Consensus 407 mls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~ 486 (1051)
T KOG0168|consen 407 MLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYE 486 (1051)
T ss_pred HHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcc
Confidence 888888877888888888888888877774311 10000000000000000000
Q ss_pred -----------------------------------------------ccchhHHHHh----------cCChhhHHhhhhc
Q 000145 713 -----------------------------------------------KTTNKMSYIA----------EGDVKPLIKLAKT 735 (2054)
Q Consensus 713 -----------------------------------------------~d~~r~~I~~----------~gaV~~Lv~LL~s 735 (2054)
....|..+.. ...++.|++...+
T Consensus 487 ~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVLveVYsS 566 (1051)
T KOG0168|consen 487 IVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVLVEVYSS 566 (1051)
T ss_pred cccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 0011111111 1255666666665
Q ss_pred -CCHHHHHHHHHHHHHhhC--ChHHHHHHHhc-CcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhh
Q 000145 736 -SSIDAAETAVAALANLLS--DPDIAAEVLLE-DVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFV 811 (2054)
Q Consensus 736 -~d~~Vre~Al~AL~NLa~--~~e~r~~Iv~~-g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~ 811 (2054)
.+++||..++.||..+.. +++.-..+.+. ..-..+-.++...+..+---|..+.--|+..-| +.+-..+.++|.
T Consensus 567 sA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlp--d~F~~~F~REGV 644 (1051)
T KOG0168|consen 567 SANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLP--DTFSPSFRREGV 644 (1051)
T ss_pred cCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhH--HHhhhhHhhhhH
Confidence 688999999999999965 56655555544 445666678888888776666665555555432 555556666666
Q ss_pred HHHHHHhhc
Q 000145 812 VLTLVDSLN 820 (2054)
Q Consensus 812 v~~LV~LL~ 820 (2054)
+-..-++..
T Consensus 645 ~~~v~~L~~ 653 (1051)
T KOG0168|consen 645 FHAVKQLSV 653 (1051)
T ss_pred HHHHHHHhc
Confidence 555555554
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00066 Score=88.38 Aligned_cols=615 Identities=14% Similarity=0.116 Sum_probs=326.9
Q ss_pred cHHHHHHhhCCCC-------CCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC-------------CHH
Q 000145 172 VVPTLWDQLNPKN-------KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD-------------NAA 231 (2054)
Q Consensus 172 ~Vp~Lv~LL~s~s-------~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~-------------s~e 231 (2054)
|-|.|++.+.-.. ++...+.-.|...-..-|.++.-+.+.++..||++.|...++.- ...
T Consensus 1376 GYPMLi~tiT~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~ 1455 (2235)
T KOG1789|consen 1376 GYPMLIKTITLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVR 1455 (2235)
T ss_pred cchhhhhhhhhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhh
Confidence 6677777654221 12213444444444444444555667888999999999887762 123
Q ss_pred HHHHHHHHHHHHHhhcCCCcchhcc-cchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhh
Q 000145 232 AQSNAASLLARLMLAFGDSIPTVID-SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAI 310 (2054)
Q Consensus 232 vq~~A~~aL~nLs~~~~~~r~~i~~-sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL 310 (2054)
+..+.++++...+ ..+..|+.+.+ ...|..++++++-++-+.+...+..++..++.+ +..+..+.++|.+=-|+.++
T Consensus 1456 vc~~v~~c~SVaa-QFE~cR~~~~EmPSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd-~~LQ~~LfqAG~LWYlLp~L 1533 (2235)
T KOG1789|consen 1456 VCIHVCDCFSVAA-QFEACRQRLMEMPSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVD-TLLQFQLFQAGVLWYLLPHL 1533 (2235)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHhccccHHHHHHHHHHHHHhhh-HHHHHHHHHhhhHHHHHHHH
Confidence 5556666666555 44455555554 356778888887555667777888899999996 88888999999999888888
Q ss_pred cCCch-----------hhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHH--------
Q 000145 311 VAPSK-----------ECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYA-------- 371 (2054)
Q Consensus 311 ~s~s~-----------e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~-------- 371 (2054)
...+. +.-+....+.+...+..+|+++.|..... +.++....+++.|..+..-
T Consensus 1534 f~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE--------~~TP~N~T~~~sL~alLTPyiAr~Lk~ 1605 (2235)
T KOG1789|consen 1534 FHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADE--------ENTPDNDTVQASLRALLTPYIARCLKL 1605 (2235)
T ss_pred hcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhcccccc--------ccCCCChhHHHHHHHhccHHHHHHHHH
Confidence 55331 11111112223344566777666532211 0111122233333222110
Q ss_pred ------HHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHH-HH---hhcC----hhhhHH----------
Q 000145 372 ------LMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAM-AS---LYGN----IFLSQW---------- 427 (2054)
Q Consensus 372 ------~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL-~~---L~~n----~~~~~~---------- 427 (2054)
+..++.+.+...-++.+ +...-|...++. ++++.+- +. .++. +...+.
T Consensus 1606 e~~~~iLk~LNsN~E~Py~IWNn-~TRaELLeFve~-------Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirV 1677 (2235)
T KOG1789|consen 1606 ETNDMVLKTLNSNMENPYMIWNN-GTRAELLEFVER-------QRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRV 1677 (2235)
T ss_pred HHHHHHHHHhhcCCCCceeeecC-ccHHHHHHHHHH-------HHhccCCCCCchhhccceeeehhhccceeeeeEEEEe
Confidence 01111011111111111 111112211111 1111100 00 0000 000010
Q ss_pred --------Hhhcch-HHHHHHHhcc------------------------------C----CHHHHHHHHHHHHHhcccCc
Q 000145 428 --------VSHAEA-KKVLIGLITM------------------------------A----TADVREYLILSLTKLCRREV 464 (2054)
Q Consensus 428 --------L~~~g~-I~~LI~LL~s------------------------------s----d~evq~~Aa~AL~~Ls~~s~ 464 (2054)
+.+.+. -..|++.+++ + +.+-..-+..+|.|+...++
T Consensus 1678 YNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nP 1757 (2235)
T KOG1789|consen 1678 YNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANP 1757 (2235)
T ss_pred ecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCc
Confidence 000000 0112221111 0 11233455688899888777
Q ss_pred cchhhhhc----cccHHHHHhhhcC-CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHH
Q 000145 465 GIWEAIGK----REGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHV 539 (2054)
Q Consensus 465 e~r~~Ive----~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~a 539 (2054)
+....+.. -|-.+.+..++.+ ++++++.-|+..+..++. +.+.-..+...|.+..|+.+|.+ -|..|+.+..+
T Consensus 1758 dlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~v 1835 (2235)
T KOG1789|consen 1758 DLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDV 1835 (2235)
T ss_pred chhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHH
Confidence 55433322 1445666666664 467899999988888776 56666667778877888887755 67889999999
Q ss_pred HHHHhcCChhHHHHHHHcCChHHHHHhhc-cCChhHHHHHHHHHHHHHHhhchh--hH--------HHHHHHhcCCCcch
Q 000145 540 LWILCCHSEDIRACVESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAADSA--TI--------NQLLALLLGDSPSS 608 (2054)
Q Consensus 540 L~nLa~~sd~~r~~I~e~GaI~aLV~LLk-S~~~evq~~AA~AL~nLs~~~e~~--~I--------p~Lv~LL~~~~~~V 608 (2054)
|+.|+...+-.++.+ +.|++.-+..++. +..+..|..++..++.+..+.-.| +- ..++..++++ |+
T Consensus 1836 LYAL~S~~~i~keA~-~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~-PE- 1912 (2235)
T KOG1789|consen 1836 LYALSSNGQIGKEAL-EHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDS-PE- 1912 (2235)
T ss_pred HHHHhcCcHHHHHHH-hcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcC-HH-
Confidence 999998655555554 5888888876554 556788889999999998664221 11 1123333332 11
Q ss_pred HHHHHHHHHHHHhhhcchHHHHhhh---hcccchHHHHH-Hhcc--C----CHHHHHHHHHHHHHH----hhcChhhhhh
Q 000145 609 KAHVIKVLGHVLTMALQEDLVQKGS---AANKGLRSLVQ-VLNS--S----NEENQEYAASVLADL----FSMRQDICGS 674 (2054)
Q Consensus 609 ~~~a~~AL~~La~~~~~~d~~~~~l---~~~GaI~~LV~-LLks--~----s~evre~Aa~ALanL----as~~~e~r~~ 674 (2054)
.+.+++- .-...++.+.... .-.+.+..++. +.+. . +.++-|..+. .... .-+..-.|.-
T Consensus 1913 --AaVH~fE---~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg-~~Ea~~E~aVGG~~~R~F 1986 (2235)
T KOG1789|consen 1913 --AAVHMFE---STSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG-TSEADKECAVGGSINREF 1986 (2235)
T ss_pred --HHHHHHh---ccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc-hhhhccCcccchhhhHHH
Confidence 1111111 0011111110000 00111222211 1110 0 1111111111 0000 0000011111
Q ss_pred hhhC------------CCHHHHHHHhccCCHHHH--HHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHH
Q 000145 675 LATD------------EIVNPCMRLLTSNTQMVA--TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2054)
Q Consensus 675 Iv~~------------g~V~~Lv~LL~dgs~~vr--~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~V 740 (2054)
+.+. +.++.+..++...+++.. .--..|+-.|.+..| ...+.+-..|.++.++..+...+...
T Consensus 1987 i~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP---~LADqip~LGylPK~~~Am~~~n~s~ 2063 (2235)
T KOG1789|consen 1987 VVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHP---NLADQLPSLGYLPKFCTAMCLQNTSA 2063 (2235)
T ss_pred hhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCc---chhhhCCCccchHHHHHHHHhcCCcC
Confidence 2222 234455556654444322 222344455554333 45666777899999998887766666
Q ss_pred HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhc
Q 000145 741 AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN 820 (2054)
Q Consensus 741 re~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~ 820 (2054)
-..|+++|..|+.+....+.+..-..+.+++..|...-.-+- .|+++|.++.... .+...++....|.++-|+.+|+
T Consensus 2064 P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~~~~G-LA~EalkR~~~r~--~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2064 PRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQPSLMG-LAAEALKRLMKRN--TGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred cHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcchHHH-HHHHHHHHHHHHh--HHHHHHHHhccCcHHHHHHHhc
Confidence 678999999999988888888888888888887765433332 7899999998743 3566667777899999999997
Q ss_pred c
Q 000145 821 A 821 (2054)
Q Consensus 821 s 821 (2054)
.
T Consensus 2141 ~ 2141 (2235)
T KOG1789|consen 2141 S 2141 (2235)
T ss_pred c
Confidence 3
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.0065 Score=76.26 Aligned_cols=638 Identities=14% Similarity=0.109 Sum_probs=318.8
Q ss_pred CCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHHHH-hccCchhHHHHHhc---C-
Q 000145 53 SSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSV-LCKDEDLRLKVLLG---G- 125 (2054)
Q Consensus 53 ss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL~~-Ls~~ee~r~~v~~~---G- 125 (2054)
+++..|..+=..|.++...+ +...+-.+++.|-+. .+..|..+.-+|++ |-..++.+.+-... |
T Consensus 17 pD~n~rl~aE~ql~~l~~~d---------F~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~ 87 (858)
T COG5215 17 PDPNARLRAEAQLLELQSGD---------FEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGM 87 (858)
T ss_pred CCCCccccHHHHHHHhcccc---------HHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccC
Confidence 33334444555566665544 122445555555443 45666666666644 32222222221111 1
Q ss_pred ------ChH-HHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCC--CCChhHHHHHHH
Q 000145 126 ------CIP-PLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN--KQDNVVQGFVTG 196 (2054)
Q Consensus 126 ------aIp-~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s--~~d~~V~e~Al~ 196 (2054)
-|+ ..++.|.+..|..-..|++.+..++.... -.|.-|-|++.+.... .+......+++.
T Consensus 88 ~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~El-----------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~ 156 (858)
T COG5215 88 RHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMEL-----------PNSLWPGLMEEMVRNVGDEQPVSGKCESLG 156 (858)
T ss_pred CHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhC-----------ccccchHHHHHHHHhccccCchHhHHHHHH
Confidence 122 33477888889999999999999997432 1234555555554321 122356778999
Q ss_pred HHHHHhcCCCchhHHHHhhCC-hHHHH-hhhcc-CCHHHHHHHHHHHHH-HHhhcCCCcchhcccchHHHHHHHh---cc
Q 000145 197 ALRNLCGDKDGYWRATLEAGG-VDIIV-GLLSS-DNAAAQSNAASLLAR-LMLAFGDSIPTVIDSGAVKALVQLV---GQ 269 (2054)
Q Consensus 197 aL~nL~~~~e~r~~aI~eaGG-I~~LV-~LL~s-~s~evq~~A~~aL~n-Ls~~~~~~r~~i~~sGaL~~LL~LL---~s 269 (2054)
+++++|...... ..+...+. +-.++ .-++. ++..+|..++.+|.. +.... ..+...+-..++++.. .+
T Consensus 157 ~~gy~ces~~Pe-~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~----~nf~~E~erNy~mqvvceatq 231 (858)
T COG5215 157 ICGYHCESEAPE-DLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQ----GNFCYEEERNYFMQVVCEATQ 231 (858)
T ss_pred HHHHHhhccCHH-HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH----Hhhcchhhhchhheeeehhcc
Confidence 999999876552 22222222 22222 23332 456788889888877 33211 1111122222222222 13
Q ss_pred CCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhh
Q 000145 270 NNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLG 349 (2054)
Q Consensus 270 ~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~ 349 (2054)
+++.+++..+..++..+-.-.-+ +|+ ..-++++-+ .++
T Consensus 232 ~~d~e~q~aafgCl~kim~LyY~------------------------fm~-----~ymE~aL~a-------------lt~ 269 (858)
T COG5215 232 GNDEELQHAAFGCLNKIMMLYYK------------------------FMQ-----SYMENALAA-------------LTG 269 (858)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH------------------------HHH-----HHHHHHHHH-------------HHH
Confidence 57777887777777665442111 111 011112111 122
Q ss_pred hhcCCCCchh--hHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHH
Q 000145 350 ELSQSPRLAA--PVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQW 427 (2054)
Q Consensus 350 elL~s~~~~~--~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~ 427 (2054)
+.+++++... +..+.-.++|-. +. .+ .+-.+-+. ..+ .|.+ ....
T Consensus 270 ~~mks~nd~va~qavEfWsticeE--------ei--------d~-~~e~~~~p-e~p--~qn~-------------~fa~ 316 (858)
T COG5215 270 RFMKSQNDEVAIQAVEFWSTICEE--------EI--------DG-EMEDKYLP-EVP--AQNH-------------GFAR 316 (858)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHH--------Hh--------hh-HHHHhhcc-cCc--hhhc-------------chHH
Confidence 3333333311 101100111100 00 00 00000000 000 0000 0001
Q ss_pred HhhcchHHHHHHHhccCCH-------HHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHH
Q 000145 428 VSHAEAKKVLIGLITMATA-------DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAI 500 (2054)
Q Consensus 428 L~~~g~I~~LI~LL~ssd~-------evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~n 500 (2054)
-.-.+.+|-|++|+...++ ..-..|..+|.-++.. .+..|.+ ..+.-.-+-+++++-.-|+.|+.+++.
T Consensus 317 aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~-pVl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 317 AAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMR-PVLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHH-HHHHHHHHhccCchhhhHHHHHHHhhh
Confidence 1123567888888866332 2344555555544432 1122322 123333445677777889999999998
Q ss_pred HhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhc---cCChhHHHH
Q 000145 501 LTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK---SGGPKGQDA 577 (2054)
Q Consensus 501 Ls~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLk---S~~~evq~~ 577 (2054)
.-.+..+....-.-..++|.+.....++.--++..++|+++.++. .....+...|.++..+.-.- .+.|..-.+
T Consensus 393 vm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad---~va~~i~p~~Hl~~~vsa~liGl~D~p~~~~n 469 (858)
T COG5215 393 VMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIAD---HVAMIISPCGHLVLEVSASLIGLMDCPFRSIN 469 (858)
T ss_pred hhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHH---HHHHhcCccccccHHHHHHHhhhhccchHHhh
Confidence 876322222222234678888888877777889999999999974 33444444566666554221 246777888
Q ss_pred HHHHHHHHHHhhch--------------hhHHHHHHHhc--CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHH
Q 000145 578 SAMALTKLIRAADS--------------ATINQLLALLL--GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRS 641 (2054)
Q Consensus 578 AA~AL~nLs~~~e~--------------~~Ip~Lv~LL~--~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~ 641 (2054)
+.|...|+..+-.. ..+..|++--. .++...+.....+|+.|..
T Consensus 470 csw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~-------------------- 529 (858)
T COG5215 470 CSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL-------------------- 529 (858)
T ss_pred hHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh--------------------
Confidence 89999998766210 01111211111 1112222222333333221
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC----CHHHHHHHHHHHHHhhCCCCcccchh
Q 000145 642 LVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN----TQMVATQSARALGALSRPTKTKTTNK 717 (2054)
Q Consensus 642 LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg----s~~vr~~AA~AL~nLs~s~~~~d~~r 717 (2054)
-..+.+.+..+..+..... .-+ ..+..+-+.+... .++++.+-...|..+.+..+. ..+
T Consensus 530 ------~~~d~V~~~~a~~~~~~~~-kl~--------~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~--~ie 592 (858)
T COG5215 530 ------ICPDAVSDILAGFYDYTSK-KLD--------ECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRR--DIE 592 (858)
T ss_pred ------hcchhHHHHHHHHHHHHHH-HHH--------HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--Ccc
Confidence 1122222222222111111 000 0011111111111 245666667777777663332 111
Q ss_pred HHHHhcCChhhHHhhhhcCCH-HHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 718 MSYIAEGDVKPLIKLAKTSSI-DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 718 ~~I~~~gaV~~Lv~LL~s~d~-~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
. +....+..++.+|.+.++ -+......++++|+.+=+.+-+--.+..+|.|.+-|...+..+...|+..++.|+..-
T Consensus 593 ~--v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl 670 (858)
T COG5215 593 D--VEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL 670 (858)
T ss_pred c--HHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence 1 111245567778887644 4455788888888765554545556678999999898888899999999999998742
Q ss_pred CCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000145 797 PVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2054)
Q Consensus 797 ~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La 840 (2054)
+.++.. -+.-....|++.+++...+...+-..+...+-++
T Consensus 671 --~~df~~--y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 671 --GTDFNI--YADVLMSSLVQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred --hhhHHH--HHHHHHHHHHHHhcChhhccccchHHHHHHHHHH
Confidence 222221 2344677899999877666666666666666555
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.9e-06 Score=104.03 Aligned_cols=243 Identities=17% Similarity=0.072 Sum_probs=180.1
Q ss_pred ccHHHHHhhhc-CCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHH
Q 000145 474 EGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2054)
Q Consensus 474 ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~ 552 (2054)
.+++.++..+. .++..++..++.++..... ..++..|++.|.+.++.++..++.+|+.+..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~-----------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQED-----------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhccCC-----------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 46788888884 5556666655555432111 1137889999999999999999999998753
Q ss_pred HHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
.++.+.|+.++++.++.++..+..++.... ....+.+..+|++.++.++..+.++|+.+-
T Consensus 116 ----~~a~~~L~~~L~~~~p~vR~aal~al~~r~----~~~~~~L~~~L~d~d~~Vra~A~raLG~l~------------ 175 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASEPPGRAIGLAALGAHR----HDPGPALEAALTHEDALVRAAALRALGELP------------ 175 (410)
T ss_pred ----hHHHHHHHHHhcCCChHHHHHHHHHHHhhc----cChHHHHHHHhcCCCHHHHHHHHHHHHhhc------------
Confidence 457788999999999999998887777642 235678999999999999999999988652
Q ss_pred hhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc
Q 000145 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 633 l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
....++.|...+.+.++.+|..|++++..+.. .+++..+..+...........++..+...- .
T Consensus 176 --~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-----------~~A~~~l~~~~~~~g~~~~~~l~~~lal~~--~-- 238 (410)
T TIGR02270 176 --RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-----------RLAWGVCRRFQVLEGGPHRQRLLVLLAVAG--G-- 238 (410)
T ss_pred --cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHhccCccHHHHHHHHHHhCC--c--
Confidence 23467888889999999999999999988754 345567777555444444444444444331 1
Q ss_pred ccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
..++..|..++++.. ++..++.+|+.+. ....++.|+..+.+. .+++.|.+++.++
T Consensus 239 ----------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~--~~aR~A~eA~~~I 294 (410)
T TIGR02270 239 ----------PDAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREP--PWARLAGEAFSLI 294 (410)
T ss_pred ----------hhHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCc--HHHHHHHHHHHHh
Confidence 137788999998754 8999999999654 667899999988644 4999999999999
Q ss_pred hhc
Q 000145 793 LKH 795 (2054)
Q Consensus 793 ~~~ 795 (2054)
+.-
T Consensus 295 tG~ 297 (410)
T TIGR02270 295 TGM 297 (410)
T ss_pred hCC
Confidence 874
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.45 E-value=9e-05 Score=93.30 Aligned_cols=351 Identities=16% Similarity=0.102 Sum_probs=222.1
Q ss_pred CcHHHHHHHHcc-CCHHHHHHHHHHHHHhccCchhHHHH-Hh-----cCChHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 000145 84 QAMPLFISILRS-GTPLAKVNVAATLSVLCKDEDLRLKV-LL-----GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGG 156 (2054)
Q Consensus 84 GgVp~LV~LLks-~s~evr~~AA~vL~~Ls~~ee~r~~v-~~-----~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~ 156 (2054)
..+..++.+|+. ..+++..+....+..|..+...+... .+ .....+++++|..+|.-+...|+..|..+...+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 467788888876 47888889999998887665555443 33 245778889998889999999999999998754
Q ss_pred CCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHHH
Q 000145 157 LSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQS 234 (2054)
Q Consensus 157 ~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq~ 234 (2054)
.. ...+. ...-.+.-|...+..... ...+..++.+|.+|...++-| ..+.+.+|++.|+.+|... +.+.+-
T Consensus 133 ~~-~~~~~---~l~~~~~~l~~~l~~~~~--~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Ql~Y 205 (429)
T cd00256 133 LA-KMEGS---DLDYYFNWLKEQLNNITN--NDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQLQY 205 (429)
T ss_pred cc-ccchh---HHHHHHHHHHHHhhccCC--cchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHHHHH
Confidence 31 11111 111133455666654432 235667889999999988777 5566777999999999764 347888
Q ss_pred HHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccH------HHHHHHHhcCCHHHHHH
Q 000145 235 NAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSI------KAKKAVVAADGVPVLIG 308 (2054)
Q Consensus 235 ~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~------e~Rk~I~eaggL~~LIe 308 (2054)
.++.++|-|++..+ ........+.++.++.+++....+.+-+.+..++.|+...+. .....|++.|. +.+++
T Consensus 206 ~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~ 283 (429)
T cd00256 206 QSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQ 283 (429)
T ss_pred HHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHH
Confidence 99999999996543 344556678999999999866667888899999999988421 22234444444 33444
Q ss_pred hhcC-CchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 000145 309 AIVA-PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFD 387 (2054)
Q Consensus 309 LL~s-~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~ 387 (2054)
.+.. +-.+. + -...|..+ .+.+ .+.+..++
T Consensus 284 ~L~~rk~~De------d-----L~edl~~L-----------~e~L---------~~~~k~lt------------------ 314 (429)
T cd00256 284 SLEQRKYDDE------D-----LTDDLKFL-----------TEEL---------KNSVQDLS------------------ 314 (429)
T ss_pred HHhcCCCCcH------H-----HHHHHHHH-----------HHHH---------HHHHHHcC------------------
Confidence 3332 11110 0 00111111 1100 00000000
Q ss_pred hhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcCh----hhhHHHhhc--chHHHHHHHhc-cCCHHHHHHHHHHHHHhc
Q 000145 388 ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI----FLSQWVSHA--EAKKVLIGLIT-MATADVREYLILSLTKLC 460 (2054)
Q Consensus 388 ~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~----~~~~~L~~~--g~I~~LI~LL~-ssd~evq~~Aa~AL~~Ls 460 (2054)
..+++...+....=. | +..-.++ ++...+.+. ..++.|+.++. +.++.+...|+.-++.++
T Consensus 315 --sfD~Y~~El~sg~L~-----W-----Sp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~v 382 (429)
T cd00256 315 --SFDEYKSELRSGRLH-----W-----SPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYV 382 (429)
T ss_pred --CHHHHHHHHhcCCcc-----C-----CCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHH
Confidence 011222221111000 0 0000011 122233333 34678899884 567888888899999999
Q ss_pred ccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhh
Q 000145 461 RREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504 (2054)
Q Consensus 461 ~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~ 504 (2054)
...|..+..+.+.|+=..+++++.++|+++|.+|+.++..|..+
T Consensus 383 r~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 383 RHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 98777777777778888899999999999999999999888653
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.4e-05 Score=96.46 Aligned_cols=190 Identities=16% Similarity=0.151 Sum_probs=158.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcc-CchhHHHHHhcCC
Q 000145 48 LHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGC 126 (2054)
Q Consensus 48 L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~-~ee~r~~v~~~Ga 126 (2054)
+..++.+.++++.|+..|..++..-|++..++. -||.+.++..+++.+..+|..|+++++.... ++.+++.+.+.|+
T Consensus 90 ~~~~s~~le~ke~ald~Le~lve~iDnAndl~~--~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 90 LNSSSVDLEDKEDALDNLEELVEDIDNANDLIS--LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGA 167 (342)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhh--ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHccc
Confidence 344678889999999999999999988888775 4888899999999999999999999988775 4789999999999
Q ss_pred hHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC
Q 000145 127 IPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205 (2054)
Q Consensus 127 Ip~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~ 205 (2054)
.+.|+..|++ .+..+|..|+.++..+-.+ ...+...+...++...|.+.+.+++ .+..++..++..+..+...+
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn----~~~g~~~fl~~~G~~~L~~vl~~~~-~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRN----NKPGQDEFLKLNGYQVLRDVLQSNN-TSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhc----CcHHHHHHHhcCCHHHHHHHHHcCC-cchHHHHHHHHHHHHHHHhh
Confidence 9999999988 5777889999999999983 5678899999999999999999876 44677889999999998877
Q ss_pred CchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 000145 206 DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2054)
Q Consensus 206 e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs 244 (2054)
......+...|-...+..+....+.++.+.++..+..+.
T Consensus 243 ~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 243 KSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 665554555555556666666677788888877776655
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-05 Score=100.84 Aligned_cols=241 Identities=17% Similarity=0.037 Sum_probs=180.7
Q ss_pred CCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHH
Q 000145 517 GIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATIN 595 (2054)
Q Consensus 517 aIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip 595 (2054)
+++.++..|. ..++.++..++.++... +. ..++..|+..+.+.++.++..++.+|+.+- .....+
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~---------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~---~~~a~~ 120 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ--ED---------ALDLRSVLAVLQAGPEGLCAGIQAALGWLG---GRQAEP 120 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc--CC---------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCC---chHHHH
Confidence 6777888884 55777777665555422 11 224889999999999999999999998764 446788
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhh
Q 000145 596 QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL 675 (2054)
Q Consensus 596 ~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~I 675 (2054)
.|.++|+++++.++..+..+++.. .....+.+..+++++++.++..|+++|..+..
T Consensus 121 ~L~~~L~~~~p~vR~aal~al~~r---------------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------- 176 (410)
T TIGR02270 121 WLEPLLAASEPPGRAIGLAALGAH---------------RHDPGPALEAALTHEDALVRAAALRALGELPR--------- 176 (410)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhh---------------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc---------
Confidence 999999999998887777666541 12246788999999999999999999999876
Q ss_pred hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCh
Q 000145 676 ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP 755 (2054)
Q Consensus 676 v~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~ 755 (2054)
...++.|...+.+.++.+|..|+.++..+.. + +++.+++.+.......+...+..++... .
T Consensus 177 --~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~------------~A~~~l~~~~~~~g~~~~~~l~~~lal~-~-- 237 (410)
T TIGR02270 177 --RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--R------------LAWGVCRRFQVLEGGPHRQRLLVLLAVA-G-- 237 (410)
T ss_pred --ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H------------hHHHHHHHHHhccCccHHHHHHHHHHhC-C--
Confidence 5677888999999999999999999988753 2 2556777755555555555555555544 2
Q ss_pred HHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHH
Q 000145 756 DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEV 835 (2054)
Q Consensus 756 e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~A 835 (2054)
.+..++.|..++++.. +++.++++++.+... ..++.|+..+.+. ..+..|.++
T Consensus 238 -------~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p--------------~av~~L~~~l~d~----~~aR~A~eA 290 (410)
T TIGR02270 238 -------GPDAQAWLRELLQAAA--TRREALRAVGLVGDV--------------EAAPWCLEAMREP----PWARLAGEA 290 (410)
T ss_pred -------chhHHHHHHHHhcChh--hHHHHHHHHHHcCCc--------------chHHHHHHHhcCc----HHHHHHHHH
Confidence 2257788888887744 999999999988873 3778888888632 257888888
Q ss_pred HHHHhh
Q 000145 836 VALLAR 841 (2054)
Q Consensus 836 La~La~ 841 (2054)
+..++.
T Consensus 291 ~~~ItG 296 (410)
T TIGR02270 291 FSLITG 296 (410)
T ss_pred HHHhhC
Confidence 888874
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0033 Score=81.45 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=181.2
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHH
Q 000145 31 MDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATL 108 (2054)
Q Consensus 31 med~~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL 108 (2054)
.++.....+.|..+.+++..+ .-.++|..|++.|..+++ .+|..++ +.|++.|+..|+.+ +++....+..++
T Consensus 14 ~~k~~s~aETI~kLcDRvess-TL~eDRR~A~rgLKa~sr---kYR~~Vg--a~Gmk~li~vL~~D~~D~E~ik~~LdTl 87 (970)
T KOG0946|consen 14 PPKQQSAAETIEKLCDRVESS-TLLEDRRDAVRGLKAFSR---KYREEVG--AQGMKPLIQVLQRDYMDPEIIKYALDTL 87 (970)
T ss_pred CCccccHHhHHHHHHHHHhhc-cchhhHHHHHHHHHHHHH---HHHHHHH--HcccHHHHHHHhhccCCHHHHHHHHHHH
Confidence 344457788899999988664 567889999999999987 4566665 47999999999875 888888899888
Q ss_pred HHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCCh
Q 000145 109 SVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDN 188 (2054)
Q Consensus 109 ~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~ 188 (2054)
..+...++.-..+ +++...-.-..+.= -..+-..+.|..|+..+...+ -
T Consensus 88 ~il~~~dd~~~v~--------------dds~qsdd~g~~ia--------------e~fik~qd~I~lll~~~e~~D---F 136 (970)
T KOG0946|consen 88 LILTSHDDSPEVM--------------DDSTQSDDLGLWIA--------------EQFIKNQDNITLLLQSLEEFD---F 136 (970)
T ss_pred HHHHhcCcchhhc--------------ccchhhhHHHHHHH--------------HHHHcCchhHHHHHHHHHhhc---h
Confidence 8875444311100 11111111111111 112234567888888886543 4
Q ss_pred hHHHHHHHHHHHHhcCCCch--hHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHH
Q 000145 189 VVQGFVTGALRNLCGDKDGY--WRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQL 266 (2054)
Q Consensus 189 ~V~e~Al~aL~nL~~~~e~r--~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~L 266 (2054)
.|+..++..|.++.++.... ...+....||..++.+|.+....+|..++-.|+.+...++..++.+.=.++...|..+
T Consensus 137 ~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsI 216 (970)
T KOG0946|consen 137 HVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSI 216 (970)
T ss_pred hhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 58888999999888776443 3345667899999999999999999999999999999888888888888999999999
Q ss_pred hccCC--C-hhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcC
Q 000145 267 VGQNN--D-ISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2054)
Q Consensus 267 L~s~~--d-~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s 312 (2054)
+.... + .-|..-|...+.||..+|..++.-+.+.+-++.|..++.-
T Consensus 217 IeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 217 IEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSV 265 (970)
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCc
Confidence 96322 2 2466778889999999988999999999999999887744
|
|
| >KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.016 Score=76.24 Aligned_cols=351 Identities=13% Similarity=0.130 Sum_probs=216.9
Q ss_pred HHHHHHHHHh-hcChhhhHHHhhc----chHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhh
Q 000145 409 ERVLEAMASL-YGNIFLSQWVSHA----EAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISL 482 (2054)
Q Consensus 409 ~~Aa~AL~~L-~~n~~~~~~L~~~----g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~L 482 (2054)
+-+..+|.|+ ..++++...+... +-.+.++.++.. +++.+|.-+...+..++.+ .+.-..+++.+.+..|+++
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHHHH
Confidence 4456677777 3567666555443 345666666654 5678898888888877776 5666777888888888888
Q ss_pred hcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChh---HH-------
Q 000145 483 LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSED---IR------- 551 (2054)
Q Consensus 483 L~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~---~r------- 551 (2054)
|.+ -+..|+.++..|..|++ +++.-+...+.|++.-+..++. +.++.+|.+++..|+.|..+.-. .+
T Consensus 1822 LHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFL 1899 (2235)
T KOG1789|consen 1822 LHS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFL 1899 (2235)
T ss_pred Hhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhc
Confidence 876 45789999999999998 6777777788899988888765 45889999999999999763211 10
Q ss_pred -HHHHH--cCChHHHHHhhcc--CChhH------HHHHHHHHHHHHHhhchhhHHHHHHHhcCCCc----chHHHHHHHH
Q 000145 552 -ACVES--AGAVPAFLWLLKS--GGPKG------QDASAMALTKLIRAADSATINQLLALLLGDSP----SSKAHVIKVL 616 (2054)
Q Consensus 552 -~~I~e--~GaI~aLV~LLkS--~~~ev------q~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~----~V~~~a~~AL 616 (2054)
+.+.+ .+.-++.++++.+ ++|++ +......+..+.... .+- +.+++ +++++.+. -
T Consensus 1900 P~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~--------y~~-QQk~p~~~W~~PEqsAg-~ 1969 (2235)
T KOG1789|consen 1900 PEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKL--------YEQ-QQKDPTVKWNTPEQSAG-T 1969 (2235)
T ss_pred hHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHH--------HHH-hccCCcccccCchhhcc-h
Confidence 01111 1222555555543 23332 222222222222110 000 00000 01111000 0
Q ss_pred HHHH-hhhcchHHHHhhhh------------cccchHHHHHHhccCC--HHHHHHHHHHHHHHhhcChhhhhhhhhCCCH
Q 000145 617 GHVL-TMALQEDLVQKGSA------------ANKGLRSLVQVLNSSN--EENQEYAASVLADLFSMRQDICGSLATDEIV 681 (2054)
Q Consensus 617 ~~La-~~~~~~d~~~~~l~------------~~GaI~~LV~LLks~s--~evre~Aa~ALanLas~~~e~r~~Iv~~g~V 681 (2054)
+-.- .+.-..-..+..+. -.+.++.+..++...+ .+.-+.-..++..|....+.....+-.-|-+
T Consensus 1970 ~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGyl 2049 (2235)
T KOG1789|consen 1970 SEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYL 2049 (2235)
T ss_pred hhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccch
Confidence 0000 00000000111111 1234566666665553 3445555667777777788888888888999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--ChHHHH
Q 000145 682 NPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAA 759 (2054)
Q Consensus 682 ~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~~e~r~ 759 (2054)
|.++..+...+...-..|.+.|+.|+. ++ -....+.....+.+++..++.. ++...-|+.+|-.+.. ..+...
T Consensus 2050 PK~~~Am~~~n~s~P~SaiRVlH~Lse--n~--~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVA 2124 (2235)
T KOG1789|consen 2050 PKFCTAMCLQNTSAPRSAIRVLHELSE--NQ--FCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVA 2124 (2235)
T ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHhh--cc--HHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999877666667889999999986 33 4555677778888888888764 3445578888888865 234455
Q ss_pred HHHhcCcHHHHHHHHcCC
Q 000145 760 EVLLEDVVSALTRVLAEG 777 (2054)
Q Consensus 760 ~Iv~~g~I~~LV~LL~s~ 777 (2054)
...+.|.+|.|.++|...
T Consensus 2125 Q~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2125 QMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHhccCcHHHHHHHhccc
Confidence 667889999999998653
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00018 Score=93.06 Aligned_cols=434 Identities=15% Similarity=0.136 Sum_probs=258.3
Q ss_pred cCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHH
Q 000145 399 LKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQL 478 (2054)
Q Consensus 399 Lk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~ 478 (2054)
+++++.. +.--|..++++++...-.+ +..+-+.++++..++.+++.|+.+..++-...++.-+.+ ++.
T Consensus 116 L~s~nq~-vVglAL~alg~i~s~Emar------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~ 183 (866)
T KOG1062|consen 116 LNSSNQY-VVGLALCALGNICSPEMAR------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIA 183 (866)
T ss_pred ccCCCee-ehHHHHHHhhccCCHHHhH------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHH
Confidence 3444332 5566777777776543222 233456678889999999999999998888766654433 566
Q ss_pred HHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc---------------CCHHHHHHHHHHHHHH
Q 000145 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA---------------GSQKAREVAAHVLWIL 543 (2054)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s---------------~s~~Vre~AA~aL~nL 543 (2054)
...+|.+.+..|-..++..+..++..+++.-....+ .++.|+..|+. ++|-+|....+.|+-|
T Consensus 184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriL 261 (866)
T KOG1062|consen 184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRIL 261 (866)
T ss_pred HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHh
Confidence 777888888888888888888888765544333322 55666666542 2678899999999999
Q ss_pred hcCChhHHHHHHHcCChHHHHHhh---ccCChhHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHHHHHHHHHH
Q 000145 544 CCHSEDIRACVESAGAVPAFLWLL---KSGGPKGQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKAHVIKVLGH 618 (2054)
Q Consensus 544 a~~sd~~r~~I~e~GaI~aLV~LL---kS~~~evq~~AA~AL~nLs~~~e--~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~ 618 (2054)
+.++.+..+.+-+ .+..+..-- ++-...+.+.++.++..+-.... .-++..|-++|.+.+.+++..+...|..
T Consensus 262 Gq~d~daSd~M~D--iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r 339 (866)
T KOG1062|consen 262 GQNDADASDLMND--ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLR 339 (866)
T ss_pred cCCCccHHHHHHH--HHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHh
Confidence 8876665555421 111111111 11123456666666555532221 2356777888888888887777766665
Q ss_pred HHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000145 619 VLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2054)
Q Consensus 619 La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~ 698 (2054)
+... ++..+++ -=.++++.+++.|..+|..|...+..|.. ..+.+. .++.|+.+|...+++.|..
T Consensus 340 ~V~~--d~~avqr------Hr~tIleCL~DpD~SIkrralELs~~lvn--~~Nv~~-----mv~eLl~fL~~~d~~~k~~ 404 (866)
T KOG1062|consen 340 VVQQ--DPTAVQR------HRSTILECLKDPDVSIKRRALELSYALVN--ESNVRV-----MVKELLEFLESSDEDFKAD 404 (866)
T ss_pred hhcC--CcHHHHH------HHHHHHHHhcCCcHHHHHHHHHHHHHHhc--cccHHH-----HHHHHHHHHHhccHHHHHH
Confidence 5432 2222222 13567888999999999999999888875 223222 3577888888888899998
Q ss_pred HHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--hHHHHHHHhcCcHHHHH-H-HH
Q 000145 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PDIAAEVLLEDVVSALT-R-VL 774 (2054)
Q Consensus 699 AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~--~e~r~~Iv~~g~I~~LV-~-LL 774 (2054)
.+.-+..++..+.+ ..+. .+..+.+.+...-.-|+..+...+..|..+ ++..+..+.. .-..+. . ++
T Consensus 405 ~as~I~~laEkfaP--~k~W------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~r-Ly~a~~~~~~~ 475 (866)
T KOG1062|consen 405 IASKIAELAEKFAP--DKRW------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLR-LYLALSEDTLL 475 (866)
T ss_pred HHHHHHHHHHhcCC--cchh------HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHH-HHHHHhhhhhh
Confidence 88888888764433 4444 334455555543333444333333333221 1111111000 000000 0 12
Q ss_pred cCCCHHHHHHHHHHHHHhhh--cCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCc
Q 000145 775 AEGTSEGKKNASRALHQLLK--HFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPP 852 (2054)
Q Consensus 775 ~s~~~evr~~Aa~AL~nL~~--~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~ 852 (2054)
....+.+.+-|.||++..+. -.+.++.-.........+..|..++.+...+..++..|+-||..|...-..+
T Consensus 476 ~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~------ 549 (866)
T KOG1062|consen 476 DISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS------ 549 (866)
T ss_pred hhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc------
Confidence 22344557789999988661 1111111111223356788888888877777888889999888887421111
Q ss_pred ccccccCCCchHHHH-HhhhcCChhHHHHHHHHH
Q 000145 853 WAALAEVPSSIEPLV-CCLAEGPPPLQDKAIEIL 885 (2054)
Q Consensus 853 ~~~~~~~~~~L~~Lv-~ll~~~~~~vq~~Ai~iL 885 (2054)
.+ -+..|+ ....+-+.++|++|++-=
T Consensus 550 ------~~-ri~~lI~~~~~s~~~elQQRa~E~~ 576 (866)
T KOG1062|consen 550 ------SE-RIKQLISSYKSSLDTELQQRAVEYN 576 (866)
T ss_pred ------HH-HHHHHHHHhcccccHHHHHHHHHHH
Confidence 01 133343 344455667999998743
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.7e-05 Score=93.00 Aligned_cols=317 Identities=15% Similarity=0.128 Sum_probs=214.9
Q ss_pred hHHHHHHHHcCCCChhhHHHHHHHHHHHhhc-ChhhhHHHhh-----cchHHHHHHHhccCCHHHHHHHHHHHHHhcccC
Q 000145 390 QIEDILVMLLKPHDNKLVQERVLEAMASLYG-NIFLSQWVSH-----AEAKKVLIGLITMATADVREYLILSLTKLCRRE 463 (2054)
Q Consensus 390 gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~-n~~~~~~L~~-----~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s 463 (2054)
.....++.++.....+++.+.+..-+..+.. ++...+.+.+ .+...+++.++...+.-++..++..|..+...+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4456777788777666677777777777643 4444444443 245677888998888889999999999887653
Q ss_pred ccchhhhhccccHHHHHhhhcCC-ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHH
Q 000145 464 VGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVL 540 (2054)
Q Consensus 464 ~e~r~~Ive~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL 540 (2054)
..........--.+.+...++++ +...+..++.+|..|.. .++.|..+.+.++++.|+.+|+.. +...+-.+.-++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 33211111111223455566544 45677788899999988 688999999999999999999764 568889999999
Q ss_pred HHHhcCChhHHHHHHHcCChHHHHHhhccC-ChhHHHHHHHHHHHHHHhhc----h---------hhHHHHHHHhcC---
Q 000145 541 WILCCHSEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAAD----S---------ATINQLLALLLG--- 603 (2054)
Q Consensus 541 ~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~-~~evq~~AA~AL~nLs~~~e----~---------~~Ip~Lv~LL~~--- 603 (2054)
+-|+.+.+ ..+...+.+.|+.|+++++.. .+.+.+-+..+|.|+..... . ..++.+++.|..
T Consensus 212 WlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~ 290 (429)
T cd00256 212 WLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKY 290 (429)
T ss_pred HHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCC
Confidence 99998644 445556689999999999864 46788888899999987531 0 123444555543
Q ss_pred CCcchHHHHHHHH-------HHHHh----------------hhc-chHHHHhh---hhcc--cchHHHHHHhc-cCCHHH
Q 000145 604 DSPSSKAHVIKVL-------GHVLT----------------MAL-QEDLVQKG---SAAN--KGLRSLVQVLN-SSNEEN 653 (2054)
Q Consensus 604 ~~~~V~~~a~~AL-------~~La~----------------~~~-~~d~~~~~---l~~~--GaI~~LV~LLk-s~s~ev 653 (2054)
.|+++.......- ..+.. +.. ++.++++- +.+. ..++.|++++. +.++.+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~ 370 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPII 370 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcce
Confidence 3333322211100 01100 001 11222211 2222 33789999995 446777
Q ss_pred HHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 654 QEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 654 re~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
..-|+.=+..++...|..+..+.+-|+=..+++++.+.++++|.+|..|+..|-.
T Consensus 371 laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 371 LAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred eehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 7777777888888788888888888999999999999999999999999998854
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.1e-06 Score=107.56 Aligned_cols=358 Identities=15% Similarity=0.073 Sum_probs=236.1
Q ss_pred HHhcCChhHHHHHHHcCChHHHHHhhccCCh-h-HHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHHHHHHHHH
Q 000145 542 ILCCHSEDIRACVESAGAVPAFLWLLKSGGP-K-GQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKAHVIKVLG 617 (2054)
Q Consensus 542 nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~-e-vq~~AA~AL~nLs~~~e--~~~Ip~Lv~LL~~~~~~V~~~a~~AL~ 617 (2054)
+++.+.+.....+.+.+....+..+....+. - .-...++.+.|.+.... .+..+.+.++..+...++.......-+
T Consensus 376 y~s~~a~~ke~~i~d~~s~~aln~l~~~~~~~~~~~~~lg~~l~s~a~~~~~~sE~~qel~~la~~a~qev~~~~~~n~~ 455 (748)
T KOG4151|consen 376 YLSIDAELKELKIEDSSSSKALNGLKGDAVESYLDLHELGMKLYSEAMEEEVTSEKAQELFDLAAFAFQEVAALSPLNWG 455 (748)
T ss_pred hhccccchhhhhccccchHHHHHhhhcccccccccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccccc
Confidence 5555555555556666777777777766554 2 22335666777765421 245566777766554444322111111
Q ss_pred HHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHH
Q 000145 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697 (2054)
Q Consensus 618 ~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~ 697 (2054)
+.. ...-+.....+..+.++...++.+....+..+ ......+...++.|+...|+++....++..+.
T Consensus 456 ~v~------~~r~rk~~~~~~~~~~~svakt~~~~~~E~~a-------A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl 522 (748)
T KOG4151|consen 456 NVH------MSRARKRLSLDEDPSCESVAKTVSWAKNEYLA-------AKEKYERAKKIKPGGYEALLRLGQQQFEEAKL 522 (748)
T ss_pred hHH------HHHHHHhhccCcchhhhHHHHHHHHHHHHHHh-------hhhHHhcCccccccHHHHHHHHHHHhchHHHH
Confidence 110 00001123444555555555444433333332 23567788899999999999999999999999
Q ss_pred HHHHHHH-HhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHH-HHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHH
Q 000145 698 QSARALG-ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAE-TAVAALANLLS-DPDIAAEVLLEDVVSALTRVL 774 (2054)
Q Consensus 698 ~AA~AL~-nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre-~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL 774 (2054)
.+..+|. .+.. + ..+. ..+++++.+.++........ +++.+|.||++ +...|+++.++.+++.+..++
T Consensus 523 ~~~~aL~~~i~f--~---~~~~----~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~ 593 (748)
T KOG4151|consen 523 KWYHALAGKIDF--P---GERS----YEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELM 593 (748)
T ss_pred HHHHHHhhhcCC--C---CCch----hhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHh
Confidence 9999998 3322 2 3332 45888898888876544444 79999999988 556688899999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh-cccCCCccCCcc
Q 000145 775 AEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR-TKQGLNFTYPPW 853 (2054)
Q Consensus 775 ~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~-~~~~~~~i~~~~ 853 (2054)
.+.++..|+.+.+.+.||.... ..+.+.+.....-.++++.+... ..+....++..+++.++. ..+.|..+.
T Consensus 594 ~ee~~~lqraa~e~~~NLl~~~---~~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~--- 666 (748)
T KOG4151|consen 594 TEENPALQRAALESIINLLWSP---LLYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITSVVENHCSRIL--- 666 (748)
T ss_pred hcccHHHHHHHHHHHHHHHhhH---HHHHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhhcchhhhhhHH---
Confidence 9999999999999999999975 44554555534445566666433 445566777777775554 334455432
Q ss_pred cccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhhhHHHHHh
Q 000145 854 AALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICA 933 (2054)
Q Consensus 854 ~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~~ 933 (2054)
+...|.+.++....++.+.+||+++.+..|+.... ..++..++.++.+++..+-.+.=-..
T Consensus 667 ----~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~---------------~ei~~~~~~~~~~~~l~~~~~~~~a~ 727 (748)
T KOG4151|consen 667 ----ELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL---------------FEIAEKIFETEVMELLSGLQKLNRAP 727 (748)
T ss_pred ----HhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH---------------HHHHHHhccchHHHHHHHHHHhhhhh
Confidence 35569999999999999999999999999966543 57888999999988888877763333
Q ss_pred cccchhhhHHHHhh
Q 000145 934 AKEHKKQSMDALDL 947 (2054)
Q Consensus 934 ~k~~~~~~~~~L~~ 947 (2054)
.|+-+++.+..-..
T Consensus 728 ~~~~~~~~l~~a~~ 741 (748)
T KOG4151|consen 728 KREDAAPCLSAAEE 741 (748)
T ss_pred hhhhhhhHHHHHHH
Confidence 44444444444333
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00066 Score=85.09 Aligned_cols=271 Identities=14% Similarity=0.106 Sum_probs=177.2
Q ss_pred chHhhhhhcCCHHHHHHHHHHHHHHhcCCh--hHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh-------
Q 000145 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSE--DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA------- 589 (2054)
Q Consensus 519 p~LV~LL~s~s~~Vre~AA~aL~nLa~~sd--~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~------- 589 (2054)
..++.+|++..+++|..|+...+.|+.--. .-.+.+...| ..|.+-+....|++.-....++..+.+..
T Consensus 607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqp 684 (975)
T COG5181 607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQP 684 (975)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCC
Confidence 345567899999999999998888854100 0012222222 22456667778888887777777766542
Q ss_pred -chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcC
Q 000145 590 -DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMR 668 (2054)
Q Consensus 590 -e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~ 668 (2054)
-.+++|.|...|++..+.+......-++.++...+..-..++.++ .--.|+++|++.+.++|.+|...+..++..
T Consensus 685 Pi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a- 760 (975)
T COG5181 685 PISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRA- 760 (975)
T ss_pred chhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh-
Confidence 256889999999999988888888888888766554333333221 123578889999999999999999988752
Q ss_pred hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000145 669 QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2054)
Q Consensus 669 ~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL 748 (2054)
+--++++..|+.-|+......|...+-+++-.+...-. ..++|.|..=-..+...|+.-.+.++
T Consensus 761 ------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp----------fsVlP~lm~dY~TPe~nVQnGvLkam 824 (975)
T COG5181 761 ------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP----------FSVLPTLMSDYETPEANVQNGVLKAM 824 (975)
T ss_pred ------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc----------hhhHHHHHhcccCchhHHHHhHHHHH
Confidence 22234555555555554445555445455444331100 12555565555667888999999999
Q ss_pred HHhhCChH--HHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhc
Q 000145 749 ANLLSDPD--IAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLN 820 (2054)
Q Consensus 749 ~NLa~~~e--~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~ 820 (2054)
+.+...-. .++.+- ...|.|.+.|.+.|+--|+.|.-.+.+|.-+.+.- ....+.-+|++++=
T Consensus 825 ~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gt-------g~eda~IHLlNllw 889 (975)
T COG5181 825 CFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGT-------GDEDAAIHLLNLLW 889 (975)
T ss_pred HHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCc-------ccHHHHHHHHHHhh
Confidence 99975322 222332 25677778899999999999999999998875431 11234556777664
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00013 Score=90.00 Aligned_cols=250 Identities=25% Similarity=0.257 Sum_probs=187.9
Q ss_pred ccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
..++.+.+.+.+.+..+|..+...++.+.. ..+++.+..+|.+.++.+|..|+.+|+.+..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------
Confidence 467788999999989999999999777765 3478999999999999999999999998854
Q ss_pred HHHcCChHHHHHhhc-cCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcc------------hHHHHHHHHHHHH
Q 000145 554 VESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPS------------SKAHVIKVLGHVL 620 (2054)
Q Consensus 554 I~e~GaI~aLV~LLk-S~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~------------V~~~a~~AL~~La 620 (2054)
..+++.|+.++. +++..++..++++|+.+.. ...+.+++..+.++... ++..+..+++.
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~---~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~-- 175 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLGD---ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGE-- 175 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc---hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHH--
Confidence 457899999888 6889999999999999853 35688899988886622 33333333332
Q ss_pred hhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHH
Q 000145 621 TMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSA 700 (2054)
Q Consensus 621 ~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA 700 (2054)
+.+...+..+..++++.+..+|..|+.+|..+...+ ..+...+...+.+.+..++..++
T Consensus 176 ------------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 176 ------------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred ------------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 234446788888888888889999999888887632 35567788888888889998888
Q ss_pred HHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHH
Q 000145 701 RALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSE 780 (2054)
Q Consensus 701 ~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~e 780 (2054)
.+|+.+.. . ..+..+...+.+.+..++..+..++..+ ........+...+.+....
T Consensus 235 ~~l~~~~~--~------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~ 290 (335)
T COG1413 235 LALGEIGD--E------------EAVDALAKALEDEDVILALLAAAALGAL----------DLAEAALPLLLLLIDEANA 290 (335)
T ss_pred HHhcccCc--c------------hhHHHHHHHHhccchHHHHHHHHHhccc----------CchhhHHHHHHHhhcchhh
Confidence 88877753 1 2567788888888777777666666521 1223455566677777788
Q ss_pred HHHHHHHHHHHhhhc
Q 000145 781 GKKNASRALHQLLKH 795 (2054)
Q Consensus 781 vr~~Aa~AL~nL~~~ 795 (2054)
++..+...+......
T Consensus 291 ~~~~~~~~l~~~~~~ 305 (335)
T COG1413 291 VRLEAALALGQIGQE 305 (335)
T ss_pred HHHHHHHHHHhhccc
Confidence 888888888777664
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00026 Score=87.50 Aligned_cols=275 Identities=27% Similarity=0.296 Sum_probs=206.9
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhH
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~ 511 (2054)
..+..++..+.+.+..++..++..+..+... ..++.+..++.+.++.+|..++.+|+++..
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~-------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGD-------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------
Confidence 4667788889888888999888886655433 568999999999999999999999888875
Q ss_pred HHhhCCCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCC----------h--hHHHHH
Q 000145 512 ITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGG----------P--KGQDAS 578 (2054)
Q Consensus 512 I~~aGaIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~----------~--evq~~A 578 (2054)
..++++|+.+|. +.+..+|..++++|+.+.. ..++.+++..+++.. + .++..+
T Consensus 104 ---~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~-----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 104 ---PEAVPPLVELLENDENEGVRAAAARALGKLGD-----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ---hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc-----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 247899999998 5799999999999999864 335778888877755 2 467777
Q ss_pred HHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHH
Q 000145 579 AMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAA 658 (2054)
Q Consensus 579 A~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa 658 (2054)
+.+|..+ .+...++.+..++.+.+..++..+..+|+.+.... ......+...+.+++..+|..++
T Consensus 170 ~~~l~~~---~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------------~~~~~~l~~~~~~~~~~vr~~~~ 234 (335)
T COG1413 170 AEALGEL---GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN------------VEAADLLVKALSDESLEVRKAAL 234 (335)
T ss_pred HHHHHHc---CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------------hhHHHHHHHHhcCCCHHHHHHHH
Confidence 7777666 35578899999999999999999888888764221 13467788889999999999999
Q ss_pred HHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCH
Q 000145 659 SVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI 738 (2054)
Q Consensus 659 ~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~ 738 (2054)
.+|..+.. ...+..+...+.+++..++..+..++...-. ......+...+.+...
T Consensus 235 ~~l~~~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~ 289 (335)
T COG1413 235 LALGEIGD-----------EEAVDALAKALEDEDVILALLAAAALGALDL--------------AEAALPLLLLLIDEAN 289 (335)
T ss_pred HHhcccCc-----------chhHHHHHHHHhccchHHHHHHHHHhcccCc--------------hhhHHHHHHHhhcchh
Confidence 99888765 5667889999999998888777766662211 1245667777888888
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 000145 739 DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2054)
Q Consensus 739 ~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL 789 (2054)
.++..+..++.... .......+.....+++...+..+...+
T Consensus 290 ~~~~~~~~~l~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 330 (335)
T COG1413 290 AVRLEAALALGQIG----------QEKAVAALLLALEDGDADVRKAALILL 330 (335)
T ss_pred hHHHHHHHHHHhhc----------ccchHHHHHHHhcCCchhhHHHHHHHH
Confidence 88888888877554 333444455555556565555554443
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0034 Score=82.45 Aligned_cols=238 Identities=19% Similarity=0.191 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHH---HHHHHhhhcCcHHHHHHHHccC-------CHHHHHHHHHH
Q 000145 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKE---ARLLIGSHAQAMPLFISILRSG-------TPLAKVNVAAT 107 (2054)
Q Consensus 38 ~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~---ar~~I~~~aGgVp~LV~LLks~-------s~evr~~AA~v 107 (2054)
...+.+|+..|+... ...|..++--+.+++...+. .++.|.+ +=|.+-+-++|+++ ....+.-+..+
T Consensus 4 ~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~-aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 4 SASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFE-AIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred hHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHH-hcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 456889999998875 35689999999999887763 4456777 67788888999983 46788889999
Q ss_pred HHHhccCchhHHHHHhcCChHHHHHhhccCCH-HHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCC
Q 000145 108 LSVLCKDEDLRLKVLLGGCIPPLLSLLKSEST-DTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186 (2054)
Q Consensus 108 L~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~-eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~ 186 (2054)
|..+|.+++....---.+.||.|++++...+. ++...|..+|..++. .+.|++.+++.|+|+.|.+.+..++
T Consensus 81 L~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias-----~~~G~~aLl~~g~v~~L~ei~~~~~-- 153 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS-----SPEGAKALLESGAVPALCEIIPNQS-- 153 (543)
T ss_pred HHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc-----CcHhHHHHHhcCCHHHHHHHHHhCc--
Confidence 99999987765333334789999999988554 999999999999996 5789999999999999999997643
Q ss_pred ChhHHHHHHHHHHHHhcCCCchhHHHHhhCCh----HHHHhhhccCCHHHHHHHHHHHHHHHhhcCCC-cchhccc----
Q 000145 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGV----DIIVGLLSSDNAAAQSNAASLLARLMLAFGDS-IPTVIDS---- 257 (2054)
Q Consensus 187 d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI----~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~-r~~i~~s---- 257 (2054)
...+.++.+|.+++......... .+..++ +.+...........+-..+..|..+....+.. .......
T Consensus 154 --~~~E~Al~lL~~Lls~~~~~~~~-~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~ 230 (543)
T PF05536_consen 154 --FQMEIALNLLLNLLSRLGQKSWA-EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLS 230 (543)
T ss_pred --chHHHHHHHHHHHHHhcchhhhh-hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHH
Confidence 35788999999998865421100 111222 33334444444455666777777776433211 1112222
Q ss_pred chHHHHHHHhccCCChhHHHHHHHHHHHHhh
Q 000145 258 GAVKALVQLVGQNNDISVRASAADALEALSS 288 (2054)
Q Consensus 258 GaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~ 288 (2054)
.....+..++++......|..+......+..
T Consensus 231 ~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 231 DLRKGLRDILQSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 2334445555554555666666555555443
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00026 Score=86.04 Aligned_cols=275 Identities=17% Similarity=0.147 Sum_probs=189.1
Q ss_pred hhhhccccHHHHHhhhcCCChh--hhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHHHHh
Q 000145 468 EAIGKREGIQLLISLLGLSSEQ--HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILC 544 (2054)
Q Consensus 468 ~~Ive~ggIp~LV~LL~s~d~~--Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa 544 (2054)
+.|...||+..|++++..++.+ +|..+...|-.+.. .+|+..+...| +..++.+-+.. .++.++..+++|.++-
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 4566679999999999988765 58899999988875 67888888776 55555555443 6788999999999999
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhc
Q 000145 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL 624 (2054)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~ 624 (2054)
.|+++...-++..|++.+++--.+..+|.+.++++-+|+|+.-+. ..
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~---------------~~------------------ 297 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHG---------------GQ------------------ 297 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhc---------------hh------------------
Confidence 999988888888999999998888889999999999999996441 11
Q ss_pred chHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000145 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2054)
Q Consensus 625 ~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~ 704 (2054)
..++.+.+..+-++|..+..+.++-+|.+|+-+.+-|+. +.+.-..+.+.|.+...-.++.+-+|.-- ++--.
T Consensus 298 ---a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~~F---ARD~h 370 (832)
T KOG3678|consen 298 ---AVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT-NKEVEREVRKSGTLALVEPLVASLDPGRF---ARDAH 370 (832)
T ss_pred ---HHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh-hhhhhHHHhhccchhhhhhhhhccCcchh---hhhhh
Confidence 122334445567888888888888999999999999988 67777777777765444444443333200 01001
Q ss_pred HhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCh--HHH-HHHHhcCcHHHHHHHHcCCCHHH
Q 000145 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP--DIA-AEVLLEDVVSALTRVLAEGTSEG 781 (2054)
Q Consensus 705 nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~--e~r-~~Iv~~g~I~~LV~LL~s~~~ev 781 (2054)
.-+.+ ...+.+..|+-+|.+..-+.+.-++.-|+.=+.-. ... +-+-+-|+|..|-++..+.+..-
T Consensus 371 d~aQG-----------~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~va 439 (832)
T KOG3678|consen 371 DYAQG-----------RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVA 439 (832)
T ss_pred hhhcc-----------CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHH
Confidence 11111 11336777888888765554443333333222211 111 22345578888888888777766
Q ss_pred HHHHHHHHHHhhhcC
Q 000145 782 KKNASRALHQLLKHF 796 (2054)
Q Consensus 782 r~~Aa~AL~nL~~~~ 796 (2054)
...|.++|.-++..-
T Consensus 440 akfAseALtviGEEV 454 (832)
T KOG3678|consen 440 AKFASEALTVIGEEV 454 (832)
T ss_pred HHHHHHHHHHhcccc
Confidence 777888887776543
|
|
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00019 Score=86.87 Aligned_cols=182 Identities=17% Similarity=0.137 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~ 486 (2054)
-++.+..-|-.+..+-++...+...||..+++..+.+++..++..|+..++..+.+++..+..+.+.|+.+.|+..+.++
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~ 178 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD 178 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence 55666666777778888999999999999999999999999999999999999999999999999999999999988855
Q ss_pred C-hhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc--CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHH
Q 000145 487 S-EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA--GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2054)
Q Consensus 487 d-~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s--~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aL 563 (2054)
+ ..++..|+.+++.|-++.+.....+...+|+..|...|.+ .+...+..++..+.+|.......+..+...+....+
T Consensus 179 ~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~ 258 (342)
T KOG2160|consen 179 DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVL 258 (342)
T ss_pred CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Confidence 4 4577999999999999888888888899999999999998 478889999999999988655556666666777777
Q ss_pred HHhhccCChhHHHHHHHHHHHHHHh
Q 000145 564 LWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 564 V~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
..+..+.+.++++++..++..+...
T Consensus 259 ~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 259 ENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred HHHhhccchhhhHHHHHHHHHHHHH
Confidence 7788888888998888887766543
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.001 Score=83.35 Aligned_cols=350 Identities=16% Similarity=0.184 Sum_probs=221.1
Q ss_pred HhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh---
Q 000145 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--- 589 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--- 589 (2054)
.-.+.++|.+..+.+.+..+|-.|++.|+|++.-... ....--......++++..+.+..++. ++..|-.+..+.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~-~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG-EVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVTE 158 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc-CcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhccc
Confidence 4567899999999999999999999999999762110 00111123445566676777766653 445555555442
Q ss_pred -c-----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHH
Q 000145 590 -D-----SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD 663 (2054)
Q Consensus 590 -e-----~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALan 663 (2054)
. .+.+|-|-+-+..-++..+.....=+..+-. .+.-++.. --....+.|..++.++++++|..+-.++.+
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds-~P~~~m~~---yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS-VPDLEMIS---YLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc-CCcHHHHh---cchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 1 2344555555556677777766555554422 12222211 223457788899999999999888777666
Q ss_pred HhhcChhhhhhh-hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCH-HHH
Q 000145 664 LFSMRQDICGSL-ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI-DAA 741 (2054)
Q Consensus 664 Las~~~e~r~~I-v~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~-~Vr 741 (2054)
+... -...... --...++.++.-+++.++.++..|..-+..+....+. ..-..-.|+...++.++.+... .++
T Consensus 235 fL~e-I~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~----~~l~~~s~il~~iLpc~s~~e~~~i~ 309 (675)
T KOG0212|consen 235 FLAE-IRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGR----DLLLYLSGILTAILPCLSDTEEMSIK 309 (675)
T ss_pred HHHH-HhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCc----chhhhhhhhhhhcccCCCCCccccHH
Confidence 6431 1111111 2246678888889999999999998888777752211 1122345566666666666554 344
Q ss_pred HHHHHH---HHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHh
Q 000145 742 ETAVAA---LANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDS 818 (2054)
Q Consensus 742 e~Al~A---L~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~L 818 (2054)
+.+... |..+.+.+....++--...+..+.+++.++..+.|-.+..-+..|-...|. +.+. ......+-|+..
T Consensus 310 ~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~---h~~~if~tLL~t 385 (675)
T KOG0212|consen 310 EYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG-QLLV---HNDSIFLTLLKT 385 (675)
T ss_pred HHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhh---hccHHHHHHHHh
Confidence 443332 223333333333333334678888999999999999999888888876653 1111 014456667777
Q ss_pred hccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhc
Q 000145 819 LNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2054)
Q Consensus 819 L~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~ 890 (2054)
|.+.++. ....++..++.++.+.+..... ..+..|.++...+...++.+|.-|+.++|-
T Consensus 386 Lsd~sd~--vvl~~L~lla~i~~s~~~~~~~-----------~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 386 LSDRSDE--VVLLALSLLASICSSSNSPNLR-----------KFLLSLLEMFKEDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred hcCchhH--HHHHHHHHHHHHhcCcccccHH-----------HHHHHHHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 7654443 4888999999998765544222 257888898999888999999999888876
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0085 Score=78.27 Aligned_cols=221 Identities=19% Similarity=0.213 Sum_probs=121.6
Q ss_pred hHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh--hchh-hHHH
Q 000145 520 PLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA--ADSA-TINQ 596 (2054)
Q Consensus 520 ~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~--~e~~-~Ip~ 596 (2054)
.++++|+++|..+|+.|.+.+..|... ..++.+ +..|+..|.+.+++.+...+.-+..++.. ++.. -+..
T Consensus 354 tIleCL~DpD~SIkrralELs~~lvn~-~Nv~~m------v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idt 426 (866)
T KOG1062|consen 354 TILECLKDPDVSIKRRALELSYALVNE-SNVRVM------VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDT 426 (866)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHHHH------HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHH
Confidence 456677777888888888777777642 233333 34566667666777777777776666644 2211 2445
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhhh---cchHHHHhhhhcccchHHHHH--HhccCCHHHHHHHHHHHHHHhhc----
Q 000145 597 LLALLLGDSPSSKAHVIKVLGHVLTMA---LQEDLVQKGSAANKGLRSLVQ--VLNSSNEENQEYAASVLADLFSM---- 667 (2054)
Q Consensus 597 Lv~LL~~~~~~V~~~a~~AL~~La~~~---~~~d~~~~~l~~~GaI~~LV~--LLks~s~evre~Aa~ALanLas~---- 667 (2054)
+.+.++....-|+..+...+-.+.... .+.+.+.+. ...+.. ++.-+.+.....+.|++..-...
T Consensus 427 ml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rL------y~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~ 500 (866)
T KOG1062|consen 427 MLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRL------YLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDG 500 (866)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHH------HHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcC
Confidence 555555444444443333333332221 111111111 111111 12223556678888988876521
Q ss_pred -ChhhhhhhhhCCCHHHHHHHhcc--CCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHh-hhhcCCHHHHHH
Q 000145 668 -RQDICGSLATDEIVNPCMRLLTS--NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIK-LAKTSSIDAAET 743 (2054)
Q Consensus 668 -~~e~r~~Iv~~g~V~~Lv~LL~d--gs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~-LL~s~d~~Vre~ 743 (2054)
+.+....+.+..++..+.+++.. .+..++..|..||.+|+...+. .. .-++.|+. +..+.+.++|..
T Consensus 501 ~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s-~~--------~ri~~lI~~~~~s~~~elQQR 571 (866)
T KOG1062|consen 501 ANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHS-SS--------ERIKQLISSYKSSLDTELQQR 571 (866)
T ss_pred ccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccc-cH--------HHHHHHHHHhcccccHHHHHH
Confidence 22223344556788888888864 4578899999999999873332 01 12333443 344567888888
Q ss_pred HHHHHHHhhCChHHHHHHH
Q 000145 744 AVAALANLLSDPDIAAEVL 762 (2054)
Q Consensus 744 Al~AL~NLa~~~e~r~~Iv 762 (2054)
|..-=.-+..+...+..|.
T Consensus 572 a~E~~~l~~~~~~lr~siL 590 (866)
T KOG1062|consen 572 AVEYNALFAKDKHLRKSIL 590 (866)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7775554444555555544
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00039 Score=85.41 Aligned_cols=191 Identities=19% Similarity=0.239 Sum_probs=137.5
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhhCCCCcc
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d----gs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
...+++.++.++|.-++..++..|..+....+...... ..+.++.+++.+++ .+...+..++++|.++.+ ..
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~--~~- 181 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR--SK- 181 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT--SH-
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC--cc-
Confidence 57888888999999999999999999987544333332 25667888887765 334566889999999997 33
Q ss_pred cchhHHHHhcCChhhHHhhh-----hc--CCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC-CHHHHHHH
Q 000145 714 TTNKMSYIAEGDVKPLIKLA-----KT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNA 785 (2054)
Q Consensus 714 d~~r~~I~~~gaV~~Lv~LL-----~s--~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~-~~evr~~A 785 (2054)
..|..+.+.++++.|..++ .+ .+..++-+++.+++.|+-+++....+.+.+.++.|+++++.. .+++-+-+
T Consensus 182 -~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~ 260 (312)
T PF03224_consen 182 -EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVS 260 (312)
T ss_dssp -HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHH
T ss_pred -hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHH
Confidence 7999999999999999999 33 345556689999999999999999999999999999998866 68899999
Q ss_pred HHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHH
Q 000145 786 SRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVV 836 (2054)
Q Consensus 786 a~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~AL 836 (2054)
..++.|+....+ +.+...+..+ .+.++++.|...+.......+-+..|
T Consensus 261 la~l~Nl~~~~~--~~~~~~mv~~-~~l~~l~~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 261 LAILRNLLSKAP--KSNIELMVLC-GLLKTLQNLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HHHHHHTTSSSS--TTHHHHHHHH--HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred HHHHHHHHhccH--HHHHHHHHHc-cHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999998753 2244444433 56667777776676655555555544
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00088 Score=82.36 Aligned_cols=225 Identities=19% Similarity=0.155 Sum_probs=145.9
Q ss_pred CchHhhhhhc--CCHHHHHHHHHHHHHHhcCChhHHHHHHH------cCChHHHHHhhccCChhHHHHHHHHHHHHHHhh
Q 000145 518 IPPLVQLLEA--GSQKAREVAAHVLWILCCHSEDIRACVES------AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA 589 (2054)
Q Consensus 518 Ip~LV~LL~s--~s~~Vre~AA~aL~nLa~~sd~~r~~I~e------~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~ 589 (2054)
...++.+|+. +++++.......+..+..+++...+.+.+ .....+++.++.+++.-++..++..|..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 5566666653 57888888888888887766554444433 124666677777777777777777777665432
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc----CCHHHHHHHHHHHHHHh
Q 000145 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS----SNEENQEYAASVLADLF 665 (2054)
Q Consensus 590 e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks----~s~evre~Aa~ALanLa 665 (2054)
. ...... ..+.++.+++++++ ++.+.+..++.+|.+|.
T Consensus 137 ~---------------~~~~~~-----------------------~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL 178 (312)
T PF03224_consen 137 P---------------KRSEKL-----------------------VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL 178 (312)
T ss_dssp T---------------T--HHH-----------------------HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH
T ss_pred C---------------ccccch-----------------------HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh
Confidence 1 000000 01235555555544 45667799999999999
Q ss_pred hcChhhhhhhhhCCCHHHHHHHh-----ccC--CHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CC
Q 000145 666 SMRQDICGSLATDEIVNPCMRLL-----TSN--TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SS 737 (2054)
Q Consensus 666 s~~~e~r~~Iv~~g~V~~Lv~LL-----~dg--s~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d 737 (2054)
. .++.|..+++.++++.+..++ .++ +...+-++..++.-|+. .+ .....+...+.++.|+++++. ..
T Consensus 179 ~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF--~~--~~~~~~~~~~~i~~L~~i~~~~~K 253 (312)
T PF03224_consen 179 R-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF--EP--EIAEELNKKYLIPLLADILKDSIK 253 (312)
T ss_dssp T-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT--SH--HHHHHHHTTSHHHHHHHHHHH--S
T ss_pred C-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc--CH--HHHHHHhccchHHHHHHHHHhccc
Confidence 8 899999999999999999999 233 33566778999988875 43 566678888899999999987 56
Q ss_pred HHHHHHHHHHHHHhhCChH--HHHHHHhcCcHHHHHHHHcCC--CHHHHHHH
Q 000145 738 IDAAETAVAALANLLSDPD--IAAEVLLEDVVSALTRVLAEG--TSEGKKNA 785 (2054)
Q Consensus 738 ~~Vre~Al~AL~NLa~~~e--~r~~Iv~~g~I~~LV~LL~s~--~~evr~~A 785 (2054)
+.+..-++.+|.||...+. ....++..|+++.+..+.... |+++.+--
T Consensus 254 EKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 254 EKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred chHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 7888889999999998554 777788877777766665543 66666543
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.048 Score=69.23 Aligned_cols=330 Identities=14% Similarity=0.099 Sum_probs=191.1
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhccc--CccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhh
Q 000145 433 AKKVLIGLITMATADVREYLILSLTKLCRR--EVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510 (2054)
Q Consensus 433 ~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~--s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~ 510 (2054)
.+..++.++++.+++++..|+.....++.- ....-..+...|. .|.+-+....+++--..+.+++.+.....-...
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 355667789999999999999776665432 0111122222222 355566677777776666776666542111111
Q ss_pred HHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChh---HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000145 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED---IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 511 ~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~---~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~ 587 (2054)
..--.|.+|.|.-+|++...+++.+....++.++..+++ .|+.+. .---|+++|++.+.+++++|..+++-++.
T Consensus 683 qpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 112357899999999999999999999999999876654 233332 22347788999999999999999999986
Q ss_pred hhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000145 588 AAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 588 ~~e-~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas 666 (2054)
..- ..++..|+.-|+..+.+.+.-..-+++..+ +...--.+++.|..=-.+++..++.....+++.++.
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVa----------e~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFe 829 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVA----------EYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFE 829 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhH----------hhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHH
Confidence 632 234444444444333322222222222221 111111235555555556678889988888888876
Q ss_pred cChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc----CCHHHHH
Q 000145 667 MRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT----SSIDAAE 742 (2054)
Q Consensus 667 ~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s----~d~~Vre 742 (2054)
. -.....-.-..+.|-|-..|.+.++.-|.-|+..+.+|+-..+. ....++.-.|+++|-. .++.+..
T Consensus 830 y-ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~g-------tg~eda~IHLlNllwpNIle~sPhvi~ 901 (975)
T COG5181 830 Y-IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPG-------TGDEDAAIHLLNLLWPNILEPSPHVIQ 901 (975)
T ss_pred H-HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCC-------cccHHHHHHHHHHhhhhccCCCcHHHH
Confidence 2 11111111123445556677788888888899999999873222 1122233345555432 4566655
Q ss_pred H---HHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 743 T---AVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 743 ~---Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
. ++..+.+..+... ...-+.+-|++.+..+|. +-|...|....
T Consensus 902 ~~~Eg~e~~~~~lg~g~---------~m~Yv~qGLFHPs~~VRk-~ywtvyn~myv 947 (975)
T COG5181 902 SFDEGMESFATVLGSGA---------MMKYVQQGLFHPSSTVRK-RYWTVYNIMYV 947 (975)
T ss_pred HHHHHHHHHHHHhccHH---------HHHHHHHhccCchHHHHH-HHHHHHhhhhh
Confidence 3 4444444332111 122333445566666664 56666666554
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.6 Score=66.97 Aligned_cols=983 Identities=16% Similarity=0.097 Sum_probs=453.7
Q ss_pred CHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHcc--CCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHH
Q 000145 54 SPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS--GTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLL 131 (2054)
Q Consensus 54 s~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks--~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV 131 (2054)
+....+++...+.......+..++.+. ..-|..++..+.. ++.+++..+..+-..++.++..+..+ ...+|..++
T Consensus 135 ~~~~c~~a~a~i~~~~~~~~~~~~~l~--~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~l 211 (2710)
T PRK14707 135 DSGRCERAVARLARHLRREDKARQTLN--AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVL 211 (2710)
T ss_pred CchHHHHHHHHHHHHhccccchhhhhc--cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHH
Confidence 334456666666666655555555342 2356777777654 47778877777778888877666555 456778888
Q ss_pred Hhhcc--CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchh
Q 000145 132 SLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYW 209 (2054)
Q Consensus 132 ~LL~s--ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~ 209 (2054)
..++. ++++.+..+...-..++. +..-+..|-.+ +|...++.|..=. +...++.+..+|..=...+.+..
T Consensus 212 Na~sKWp~~~~c~~aa~~la~~l~~-----~~~l~~~~~~q-~va~~lN~lsKwp--~~~~C~~a~~~lA~rl~~~~~l~ 283 (2710)
T PRK14707 212 NALCKWPDTPDCGNAVSALAERLAD-----ESRLRNELKPQ-ELGNALNALSKWA--DTPVCAAAASALAERLVDDPGLR 283 (2710)
T ss_pred HHHhcCCCChhHHHHHHHHHHHHcC-----cHHHHHhCChH-HHHHHHHHHhcCC--CchHHHHHHHHHHHHHhhhHHHH
Confidence 88877 577777666655566664 32234444333 4444445443222 22356666666654443332221
Q ss_pred HHHHhhCChHHHHhhhcc-CC-HHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHh
Q 000145 210 RATLEAGGVDIIVGLLSS-DN-AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALS 287 (2054)
Q Consensus 210 ~aI~eaGGI~~LV~LL~s-~s-~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs 287 (2054)
+.+ ..-.+...+.-|+. ++ ..++..+..+-..|. .+++.++.+ +.-.+...++.|.+=.+..+...++..|..-.
T Consensus 284 ~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~-~d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl 360 (2710)
T PRK14707 284 KAL-DPINVTQALNALSKWADLPVCAEAAIALAERLA-DDPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERL 360 (2710)
T ss_pred Hhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh-ccHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHh
Confidence 222 12223333333332 33 345555555555555 344444333 33445566666654445455555555554433
Q ss_pred hccHHHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhhhHHHHHHHHHhcCchhH--------HHHhhhhcCCCCch
Q 000145 288 SKSIKAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALANIYGGMPAL--------VVYLGELSQSPRLA 358 (2054)
Q Consensus 288 ~~s~e~Rk~I~eaggL~~LIeLL~s-~s~e~~q~~~~~~lqe~Al~ALanLsGgis~l--------I~~L~elL~s~~~~ 358 (2054)
...++.|+.+- ..|+...++.+.. |.+. ....+..+|+.-..+.+.+ +.....-+..=+..
T Consensus 361 ~~d~~l~~~l~-~q~~a~~lNalsKWp~~~---------~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~ 430 (2710)
T PRK14707 361 VADPELRKDLE-PQGVSSVLNALSKWPDTP---------VCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDL 430 (2710)
T ss_pred ccCHhhhcccc-hhHHHHHHhhhhcCCCch---------HHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcc
Confidence 33477776654 5566666666654 3222 2334555554422222221 11111111111111
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHH-HhhcChhhhHHHhhcchHHHH
Q 000145 359 APVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMA-SLYGNIFLSQWVSHAEAKKVL 437 (2054)
Q Consensus 359 ~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~-~L~~n~~~~~~L~~~g~I~~L 437 (2054)
..+......++..+.+ +......+...++...|-.+-|=++.+ +-..++..|. .+..+.++.+.+.-.+....|
T Consensus 431 ~~C~~aa~~lA~~la~----d~~l~~~~~p~~va~~LnalSKWPd~p-~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L 505 (2710)
T PRK14707 431 PICGQAVSALAGRLAH----DTELCKALDPINVTQALDALSKWPDTP-ICGQTASALAARLAHERRLRKALKPQEVVIAL 505 (2710)
T ss_pred hhHHHHHHHHHHHHhc----cHHHHhhcChHHHHHHHHHhhcCCCCh-hHHHHHHHHHHHhcccHHHHhhcCHHHHHHHH
Confidence 2222222223222211 223344566667777777777777665 4445555554 455666666666555666666
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCC
Q 000145 438 IGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGG 517 (2054)
Q Consensus 438 I~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGa 517 (2054)
-.|-+-.+......++..|..-..........+...+....+-.+-+.++....+.++..|..+....+..+.. .....
T Consensus 506 ~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~-L~aq~ 584 (2710)
T PRK14707 506 HSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPKD-LHRQG 584 (2710)
T ss_pred HHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHh-hhhhH
Confidence 66666666554444444443222221222233222222233333445555566666666666654433333322 23445
Q ss_pred CchHhhhhhc-CC-HHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHH-hhccCChhHHHHHHHHHHHH-HHhh----
Q 000145 518 IPPLVQLLEA-GS-QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW-LLKSGGPKGQDASAMALTKL-IRAA---- 589 (2054)
Q Consensus 518 Ip~LV~LL~s-~s-~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~-LLkS~~~evq~~AA~AL~nL-s~~~---- 589 (2054)
+..+++.|.. ++ ...+..+.+.-..+.. .+..+..+. ...+..+++ +-|-++....+.++..|..- ....
T Consensus 585 Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~~l~-~q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~ 662 (2710)
T PRK14707 585 VVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRKELD-PVDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRK 662 (2710)
T ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHhcc-Chhhhhhcc-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHh
Confidence 5666665543 33 4444444444444443 344333332 223333333 33444445555555554432 2111
Q ss_pred --chhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHh-ccCCHHHHHHHHHHHHHHh
Q 000145 590 --DSATINQLLALL-LGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL-NSSNEENQEYAASVLADLF 665 (2054)
Q Consensus 590 --e~~~Ip~Lv~LL-~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LL-ks~s~evre~Aa~ALanLa 665 (2054)
+..-+.-++.-| +-.+.+....+..+|+.. +...+... ..+ ....+.-+++-+ |=++...-..++..|+.-.
T Consensus 663 ~fnaQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~r--La~~~~Lr-~al-~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL 738 (2710)
T PRK14707 663 TFNSLDVANALNALSKWPDTPVCAAAAGGMAER--LAADPGLR-KEL-NPVDVANALNALSKWPRTPVCAAVASALAARV 738 (2710)
T ss_pred hcchHHHHHHHHhhhcCCCchHHHHHHHHHHHH--HhcChhhH-hhc-CHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHH
Confidence 111122222222 222333344444444322 12222221 111 222334444433 3344444444444554444
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH-HhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHH
Q 000145 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG-ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAET 743 (2054)
Q Consensus 666 s~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~-nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~ 743 (2054)
...+..+..+-..++-..|-.+-+=.+...-..|+.+|. .+.. .. ..+..+. ..-+...++-|.. ++.+....
T Consensus 739 ~~~p~l~~a~~aQevANaLNALSKWPd~~~C~~AA~aLA~rLa~--~~--~Lr~aL~-pQ~vAn~LNALSKWPe~~~Cr~ 813 (2710)
T PRK14707 739 VAEPRLRKAFDAQQVATALNALSKWPDNQACAAAANTLAERQLR--EP--DVRDVLK-PREMTNALNALSKWPDTPACAA 813 (2710)
T ss_pred hcChhhhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhh--Cc--chhhhcC-HHHHHHHHHHhhcCCCchHHHH
Confidence 435555554444444344333333333333444555554 3332 11 2332111 1122223333332 33333333
Q ss_pred HHHHH-HHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccC
Q 000145 744 AVAAL-ANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAM 822 (2054)
Q Consensus 744 Al~AL-~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg 822 (2054)
|+.+| ..+..++..+..+-.++.-..|-.+-+=.+....+.|+.+|..-.... ...+..+...+....|=.+.+=.
T Consensus 814 AA~~LA~rLa~dp~Lr~af~AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e---~~LR~aL~~QevantLNALSKWP 890 (2710)
T PRK14707 814 AASALAARVADDPRLREAFDVQHVATVLNAMSKWPDNAVCAAAAGAMAERLADE---PELRHTLTAHGVVIVLNALSKWP 890 (2710)
T ss_pred HHHHHHHHHhcChhHHHhcCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC---hhhhhccchHHHHHHHhhhccCC
Confidence 44444 445567777766544444444434444456667777777777644433 22333332222222222222211
Q ss_pred CCCchhHHHHHHHHHH-HhhcccCCCccCCcccccccCCCchHHH-HHhhhcCChhHHHHHHHHHHHhhccCCc------
Q 000145 823 DMNGTDVADALEVVAL-LARTKQGLNFTYPPWAALAEVPSSIEPL-VCCLAEGPPPLQDKAIEILSRLCGDQPA------ 894 (2054)
Q Consensus 823 ~~~~~~~~~AL~ALa~-La~~~~~~~~i~~~~~~~~~~~~~L~~L-v~ll~~~~~~vq~~Ai~iL~~L~~~~~~------ 894 (2054)
+ ...-..|..+|+. |.......... .++.+... -.+...+.......|+..|..-+...+.
T Consensus 891 d--~~~C~~AA~aLA~rL~~d~~Lrqal---------~aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~d~~Lr~Aln 959 (2710)
T PRK14707 891 N--VPVCAAAASALAERLADEPELRKAL---------SAHRVATALNALSKWPDIPVCATAASALAERLSDDPDLREALD 959 (2710)
T ss_pred C--cHHHHHHHHHHHHHHhcCHHHHhhc---------cHHHHHHHHhhhccCCCchHHHHHHHHHHHHhccChhhhhhcc
Confidence 2 2223444444442 22111111111 11122222 2222234444445555555554443321
Q ss_pred --hhhhhhhccccc---------HHHHHHHHhcccCce--eehhhhHHHH-----HhcccchhhhHHHH-----hh----
Q 000145 895 --VLGDFLMARSSS---------IGALADRIMHSSSLE--VRVGGAALLI-----CAAKEHKKQSMDAL-----DL---- 947 (2054)
Q Consensus 895 --~~~~~~~~~~~~---------i~~La~~il~s~~~e--v~~~~~~~~i-----~~~k~~~~~~~~~L-----~~---- 947 (2054)
-+...++.=||| ...|+.+|.....+. .---+....+ --+...|.+++..| +.
T Consensus 960 ~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~ep~L~ 1039 (2710)
T PRK14707 960 ASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSNDPGLC 1039 (2710)
T ss_pred HHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccCHhhh
Confidence 223333444444 223444443222111 0000111111 00222333333333 00
Q ss_pred cCCcHHHHHHHH-HHhhhccCCCCCCcccccCCCccccccccccCC----------------------CCcCCCCCcchh
Q 000145 948 SGYLKPLIYALV-DMMKQNSSCSSLDIEVRTPRGYMERTAFQEADD----------------------FDVPDPATILGG 1004 (2054)
Q Consensus 948 ~g~~~~~i~~Lv-~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 1004 (2054)
-.+-...+.+.+ .+|| =|| ...+|.+...+.. -+-.=|+.+-..
T Consensus 1040 ~amdaQ~lan~LNALSK------WPd-------e~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr 1106 (2710)
T PRK14707 1040 KALSSQGLTTVLNALCK------WPE-------MPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCA 1106 (2710)
T ss_pred hhcchHHHHHHHHhhcc------CCC-------chhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHH
Confidence 112222222222 2222 244 1113333311111 111128999999
Q ss_pred hHHHHHHHHHhccCCCCcchhhhccchHHHHHHhhccCCCCcccccccchhHHHHHHHHHHccCcccc------------
Q 000145 1005 TVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIV------------ 1072 (2054)
Q Consensus 1005 ~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~~~~~~~~~~~~ll~~lf~~~~~~------------ 1072 (2054)
..++.|..+|++ +....--|.+-++-.+..-|+++ |+++.-.. -.-.|-+-|-.|++++
T Consensus 1107 ~Aa~~LA~rL~~--~~~l~~~fd~q~vA~~LNALSKW---p~~~~cr~----Aa~~LA~RL~~d~~Lr~a~~~Q~vAn~L 1177 (2710)
T PRK14707 1107 AAASALAKRLTD--DAGLRHVFDPINVSQALNALSKW---PGTQACES----AIDVLAATLANAPGLRNALSAQGVAIAL 1177 (2710)
T ss_pred HHHHHHHHHhcc--ccchhccCCHHHHHHHHHHHhcC---CCchHHHH----HHHHHHHHhccchhhhhhcCHHHHHHHH
Confidence 999999999964 44555567777776666667544 44333333 1334445667777774
Q ss_pred -------cchhhhccHHHHHHHhcccchhhhHHHHHHHHHhhccCCcc
Q 000145 1073 -------LSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKG 1113 (2054)
Q Consensus 1073 -------~~~~~~~~~~~l~~~l~~~~~~~~~~aa~~~~~~~~~~~~~ 1113 (2054)
+.|+.++++-.|+..|-+++.-=|-|..+.||.+-=-=+|+
T Consensus 1178 NaLSKWp~~~ac~~A~~~La~rlG~a~~P~r~F~m~~lAqiaNa~sRl 1225 (2710)
T PRK14707 1178 NALSKCLARPVCRSAFVLLAERAGSAELPWRQFEMRGIAVVANAMSRL 1225 (2710)
T ss_pred HHhhcCcCcHHHHHHHHHHHHhhcCCCCCchhcCHHHHHHHHHHHHHh
Confidence 37889999999999999999999999999988754333443
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0046 Score=81.28 Aligned_cols=433 Identities=16% Similarity=0.177 Sum_probs=242.7
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChh---hhhhhhhCCCHHHHHHHhccC-------CHHHHHHHHHHHHHhh
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQD---ICGSLATDEIVNPCMRLLTSN-------TQMVATQSARALGALS 707 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e---~r~~Iv~~g~V~~Lv~LL~dg-------s~~vr~~AA~AL~nLs 707 (2054)
.++..+.+|++.+++-|-.+...+.+++..++. .++.+.+.=+.+-+-++|+++ ....+.-|...|+.++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 467778889988888888888888888875442 344577777788899999873 2355666777788887
Q ss_pred CCCCcccchhHHHHhcCChhhHHhhhhcCCH-HHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHH
Q 000145 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI-DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNAS 786 (2054)
Q Consensus 708 ~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~-~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa 786 (2054)
. ++ +....-.-.+-||.|++.+...+. .+...|..+|..++.+|+.++.+.+.|+++.|.+.+.+ ++..++.|.
T Consensus 86 ~--~~--~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 86 R--DP--ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred C--Ch--hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 6 33 222211223478999999988776 89999999999999999999999999999999998877 778899999
Q ss_pred HHHHHhhhcCCCchhHhhhhhh-hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHH
Q 000145 787 RALHQLLKHFPVGDVLKGNAQC-RFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEP 865 (2054)
Q Consensus 787 ~AL~nL~~~~~~~e~i~~~i~~-~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~ 865 (2054)
.++.+++..... +...+.... ...+..+-......+ ...+.+.+..|+.+-...+.. + ......+.|+..
T Consensus 161 ~lL~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~--~~~kfell~~L~~~L~~~~~~-----~-~~~~~~~~W~~~ 231 (543)
T PF05536_consen 161 NLLLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFH--GEDKFELLEFLSAFLPRSPIL-----P-LESPPSPKWLSD 231 (543)
T ss_pred HHHHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHhcCcCCcc-----c-cccCChhhhHHH
Confidence 999999886431 111111111 233444444444333 334777777777766443111 0 011124567776
Q ss_pred HHHh----hhcCC-hhHHHHHHHHHHHhhccCCc--hhhhhhhcccccHHH-----------HHHHHhcccCceeehhhh
Q 000145 866 LVCC----LAEGP-PPLQDKAIEILSRLCGDQPA--VLGDFLMARSSSIGA-----------LADRIMHSSSLEVRVGGA 927 (2054)
Q Consensus 866 Lv~l----l~~~~-~~vq~~Ai~iL~~L~~~~~~--~~~~~~~~~~~~i~~-----------La~~il~s~~~ev~~~~~ 927 (2054)
+... +.++- +..|..|+...+.++..... .+.+...+.+++..- .+..++++...+.... +
T Consensus 232 l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~-~ 310 (543)
T PF05536_consen 232 LRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPE-K 310 (543)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHH-H
Confidence 6443 33333 44688888777777765422 222222233333322 2223333333333222 2
Q ss_pred HHHHHhcccchhhhHHHH-----------------hhcCCcHHHHHHHHHHhhhccCCCC--CC-----cccccC----C
Q 000145 928 ALLICAAKEHKKQSMDAL-----------------DLSGYLKPLIYALVDMMKQNSSCSS--LD-----IEVRTP----R 979 (2054)
Q Consensus 928 ~~~i~~~k~~~~~~~~~L-----------------~~~g~~~~~i~~Lv~l~~~~~~~~~--~d-----~~~~~~----~ 979 (2054)
...+++...-=...|.-| +..+.+..-+...+++.++..-... |+ +|+-.. .
T Consensus 311 ~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe 390 (543)
T PF05536_consen 311 QRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEE 390 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhC
Confidence 222211111111111111 2222333333333444444333222 21 222000 0
Q ss_pred Cccccccc----cccCC-----CCcCCCCCcchhhHHHHH---HHHHhccCCCCcchhhhccchHHHHHHhhcc--CCCC
Q 000145 980 GYMERTAF----QEADD-----FDVPDPATILGGTVALWL---LLIISSFLRNNNVTVMEAGALEALSDKLASY--TSNP 1045 (2054)
Q Consensus 980 ~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~a~~l---l~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~--~~~~ 1045 (2054)
-+.-|+.. |-+.+ +....|.+-++...--|| |+.|......-|+.+ .-|+..+|.++|... ...+
T Consensus 391 ~~~lr~~v~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~-~~~g~~~l~~~l~~~~~~~~~ 469 (543)
T PF05536_consen 391 TSALRKEVYGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILL-SNGGWKLLCDDLLKILQSPSG 469 (543)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHH-hCCcHHHHHHHHHHHHHhccc
Confidence 00012222 11111 111113222233333343 456666666666554 469999999998665 2234
Q ss_pred cccccccchhHH---HHHHHHHHccCccc-ccchhhhc-cHHHHHH
Q 000145 1046 QAEFEDTEGIWI---SALFLAILFQDANI-VLSPATMR-IIPALAL 1086 (2054)
Q Consensus 1046 q~~~~~~~~~~~---~~~ll~~lf~~~~~-~~~~~~~~-~~~~l~~ 1086 (2054)
.++.++..+.|+ |..||-++-..|+. ++.++++. -++.|+.
T Consensus 470 ~~~~~~~~~~~l~~~c~illNl~~~e~~~~~~~~~~f~~ll~~l~~ 515 (543)
T PF05536_consen 470 DDDAEDSAEMALVTACGILLNLVVTEPKMDVEEEATFIELLKALLQ 515 (543)
T ss_pred CcchhhhhHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHH
Confidence 555555655676 78899999999998 66555554 3455554
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.026 Score=75.92 Aligned_cols=571 Identities=15% Similarity=0.100 Sum_probs=316.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhccC-chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHH
Q 000145 86 MPLFISILRSGTPLAKVNVAATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2054)
Q Consensus 86 Vp~LV~LLks~s~evr~~AA~vL~~Ls~~-ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~r 164 (2054)
+..++.-++..+..-+.+..+-+.++..- .+.+. ....+|.+-+.+ ++..++...++.-+.++..... -
T Consensus 84 ia~l~~e~~~~di~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~------~ 153 (759)
T KOG0211|consen 84 IAVLIDELSNTDIQLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG------G 153 (759)
T ss_pred HHHHhhccCchhhhhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc------c
Confidence 44455555555555666666666665421 11211 234567777777 6666788888888888775311 1
Q ss_pred HHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCC-HHHHHHHHHHHHHH
Q 000145 165 KIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDN-AAAQSNAASLLARL 243 (2054)
Q Consensus 165 e~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s-~evq~~A~~aL~nL 243 (2054)
..+ ..-..+.+-.+. .. ++..++++++..+...+........ .. -.-.++..+.... -..+..++.++...
T Consensus 154 ~~~-~~~ll~~le~l~-~~--eet~vr~k~ve~l~~v~~~~~~~~~---~~-~lv~l~~~l~~~d~~~sr~sacglf~~~ 225 (759)
T KOG0211|consen 154 PEY-AHMLLPPLELLA-TV--EETGVREKAVESLLKVAVGLPKEKL---RE-HLVPLLKRLATGDWFQSRLSACGLFGKL 225 (759)
T ss_pred hhH-HHHhhHHHHhhh-HH--HHHHHHHHHHHHHHHHHHhcChHHH---HH-HHHHHHHHccchhhhhcchhhhhhhHHh
Confidence 111 111222222222 21 2345677888887777665543311 00 1112222222221 12455566666655
Q ss_pred HhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhh
Q 000145 244 MLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRG 323 (2054)
Q Consensus 244 s~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~ 323 (2054)
.-..++ ..++. -+..+..-+.++.+..+|..++.-+.+++.. ..+.....+.++.++++..+...
T Consensus 226 ~~~~~~---~~vk~-elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~Ddqd-------- 290 (759)
T KOG0211|consen 226 YVSLPD---DAVKR-ELRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQD-------- 290 (759)
T ss_pred ccCCCh---HHHHH-HHHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchh--------
Confidence 522111 11111 1233333343456677888888877777664 22256667778888887776442
Q ss_pred hhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCC
Q 000145 324 QALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHD 403 (2054)
Q Consensus 324 ~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~ 403 (2054)
.+++.|..++.++.+ ++..+. ...+ ...+.++...+...
T Consensus 291 -sVr~~a~~~~~~l~~-----------l~~~~~----------------------------d~~~-~~~~~l~~~~~d~~ 329 (759)
T KOG0211|consen 291 -SVREAAVESLVSLLD-----------LLDDDD----------------------------DVVK-SLTESLVQAVEDGS 329 (759)
T ss_pred -hHHHHHHHHHHHHHH-----------hcCCch----------------------------hhhh-hhhHHHHHHhcChh
Confidence 266777777666543 111110 0000 12234444444433
Q ss_pred hhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhccc-CccchhhhhccccHHHHHhh
Q 000145 404 NKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRR-EVGIWEAIGKREGIQLLISL 482 (2054)
Q Consensus 404 ~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~-s~e~r~~Ive~ggIp~LV~L 482 (2054)
- .++.........++.. +........-+++...+++....+.+...+.-...++.. +.+....+.....+|.+..+
T Consensus 330 ~-~v~~~~~~~~~~L~~~--~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~l 406 (759)
T KOG0211|consen 330 W-RVSYMVADKFSELSSA--VGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVL 406 (759)
T ss_pred H-HHHHHHhhhhhhHHHH--hccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHH
Confidence 2 2333333333333221 111112223456667777776677776666666666543 22344555555667888888
Q ss_pred hcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHH
Q 000145 483 LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPA 562 (2054)
Q Consensus 483 L~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~a 562 (2054)
..+.+..++...+.....+..-.+..+ - -.--.|.+...+++..+.++.+..+.+..+-..++..........-++.
T Consensus 407 v~d~~~~vr~a~a~~~~~~~p~~~k~~--t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~ 483 (759)
T KOG0211|consen 407 VLDNALHVRSALASVITGLSPILPKER--T-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPA 483 (759)
T ss_pred HhcccchHHHHHhccccccCccCCcCc--C-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhh
Confidence 888888888877777666543222100 0 0123445555667778999999888777775555555445556777888
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHHhhchh-hHHHHHHH----hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhccc
Q 000145 563 FLWLLKSGGPKGQDASAMALTKLIRAADSA-TINQLLAL----LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637 (2054)
Q Consensus 563 LV~LLkS~~~evq~~AA~AL~nLs~~~e~~-~Ip~Lv~L----L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~G 637 (2054)
+..+..+...+++....+.+..++.....+ ..+.+..+ +.+...+++..+...+..+......... ...
T Consensus 484 i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~------~~~ 557 (759)
T KOG0211|consen 484 IVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWA------RLE 557 (759)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchh------HHH
Confidence 888877766667766666666666553322 12223333 3334445666666666655433222211 122
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchh
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r 717 (2054)
.++.+..+...++...|...+.++..++. -.-..+.....++.+..+..|..+.+|.++|..|..+......
T Consensus 558 ~i~k~L~~~~q~~y~~R~t~l~si~~la~---v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~----- 629 (759)
T KOG0211|consen 558 EIPKLLAMDLQDNYLVRMTTLFSIHELAE---VLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE----- 629 (759)
T ss_pred hhHHHHHHhcCcccchhhHHHHHHHHHHH---HhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch-----
Confidence 36666666666667777777777665543 2234455667889999999999999999999999998762222
Q ss_pred HHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000145 718 MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2054)
Q Consensus 718 ~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NL 751 (2054)
...+..+.+.+..+-.+.+.+++-.|.-+++.+
T Consensus 630 -~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 630 -SVRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred -HHHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 233444555566666778888888777666655
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.036 Score=72.32 Aligned_cols=334 Identities=17% Similarity=0.142 Sum_probs=191.6
Q ss_pred HHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHc
Q 000145 91 SILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE 170 (2054)
Q Consensus 91 ~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~a 170 (2054)
+-|+++++.+|.-|+++|..+- ..++.-=.+-.+-++..+.++.||..|+.++-.|-+-+. .-+..
T Consensus 115 k~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~----e~k~q---- 180 (968)
T KOG1060|consen 115 KALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDP----EQKDQ---- 180 (968)
T ss_pred hhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCCh----hhHHH----
Confidence 3566677777777777777651 111110011122244556789999999999999987532 22223
Q ss_pred CcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHh---hc
Q 000145 171 GVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML---AF 247 (2054)
Q Consensus 171 G~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~---~~ 247 (2054)
.+..+-.+|.+.+ +-|...|..++..+|-+.- . + -++--..+|.+|.+.++=-|...+..|.+-+. .+
T Consensus 181 -L~e~I~~LLaD~s---plVvgsAv~AF~evCPerl---d-L-IHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~ 251 (968)
T KOG1060|consen 181 -LEEVIKKLLADRS---PLVVGSAVMAFEEVCPERL---D-L-IHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD 251 (968)
T ss_pred -HHHHHHHHhcCCC---CcchhHHHHHHHHhchhHH---H-H-hhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC
Confidence 3334445565544 4578899999999987541 1 1 12346778888877665556666666665552 11
Q ss_pred CCC---------------------cchhcccchHHHHHH----HhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCC
Q 000145 248 GDS---------------------IPTVIDSGAVKALVQ----LVGQNNDISVRASAADALEALSSKSIKAKKAVVAADG 302 (2054)
Q Consensus 248 ~~~---------------------r~~i~~sGaL~~LL~----LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eagg 302 (2054)
|.. +..+...--+..|++ +++ +.+..+...++.+...++-.+ +.. +.
T Consensus 252 P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~-S~n~sVVmA~aql~y~lAP~~-~~~------~i 323 (968)
T KOG1060|consen 252 PTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ-SRNPSVVMAVAQLFYHLAPKN-QVT------KI 323 (968)
T ss_pred ccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh-cCCcHHHHHHHhHHHhhCCHH-HHH------HH
Confidence 110 011111112222332 222 355567777777777777642 222 22
Q ss_pred HHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCC
Q 000145 303 VPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVD 382 (2054)
Q Consensus 303 L~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~ 382 (2054)
...|+.+|.++.. +|.-.+++++.++...
T Consensus 324 ~kaLvrLLrs~~~----------vqyvvL~nIa~~s~~~----------------------------------------- 352 (968)
T KOG1060|consen 324 AKALVRLLRSNRE----------VQYVVLQNIATISIKR----------------------------------------- 352 (968)
T ss_pred HHHHHHHHhcCCc----------chhhhHHHHHHHHhcc-----------------------------------------
Confidence 4566676665441 3333444444433211
Q ss_pred CcccchhhHHHHHHHH-cCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 000145 383 DEPFDARQIEDILVML-LKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCR 461 (2054)
Q Consensus 383 ~~~~~~~gIe~~Lv~L-Lk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~ 461 (2054)
+.-.++++... +.+.|+..++.+=+..|.+|.....+..-+. -+...+.+.+.++-..++.+++..+.
T Consensus 353 -----~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILr------E~q~YI~s~d~~faa~aV~AiGrCA~ 421 (968)
T KOG1060|consen 353 -----PTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILR------ELQTYIKSSDRSFAAAAVKAIGRCAS 421 (968)
T ss_pred -----hhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHH------HHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 12233555544 3445566678888888888866554443332 24445666676666677788887776
Q ss_pred cCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc
Q 000145 462 REVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527 (2054)
Q Consensus 462 ~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s 527 (2054)
..... ...++..|++++++.+..+...++..+..|...++.... ..+..|.+++.+
T Consensus 422 ~~~sv-----~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~-----~ii~~La~lldt 477 (968)
T KOG1060|consen 422 RIGSV-----TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHL-----EILFQLARLLDT 477 (968)
T ss_pred hhCch-----hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHH-----HHHHHHHHHhhh
Confidence 53222 234677899999999999999999999999875443221 134456666633
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0015 Score=76.12 Aligned_cols=257 Identities=17% Similarity=0.135 Sum_probs=161.6
Q ss_pred HHHHhhhcCCChh--hhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 477 QLLISLLGLSSEQ--HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 477 p~LV~LL~s~d~~--Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
..+.+.|...+.. -+-.|+..|+++... . .+..+.+...+++...+...+..|+....
T Consensus 6 ~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~--~---------~i~~i~ka~~d~s~llkhe~ay~LgQ~~~--------- 65 (289)
T KOG0567|consen 6 ETIGNILVNKSQPLQNRFRALFNLRNLLGP--A---------AIKAITKAFIDDSALLKHELAYVLGQMQD--------- 65 (289)
T ss_pred HHHHHHHcCccHHHHHHHHHHHhhhccCCh--H---------HHHHHHHhcccchhhhccchhhhhhhhcc---------
Confidence 3344444443322 344566666666541 1 13333333333344445555555555532
Q ss_pred HHcCChHHHHHhhcc--CChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchH-----
Q 000145 555 ESAGAVPAFLWLLKS--GGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED----- 627 (2054)
Q Consensus 555 ~e~GaI~aLV~LLkS--~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d----- 627 (2054)
..+++.|+..+.+ ..|.+|..|+.+|+.+. .....+.+.+..++...+|++-+..|+..+--......
T Consensus 66 --~~Av~~l~~vl~desq~pmvRhEAaealga~~---~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~ 140 (289)
T KOG0567|consen 66 --EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG---DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSS 140 (289)
T ss_pred --chhhHHHHHHhcccccchHHHHHHHHHHHhhc---chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccC
Confidence 5688888887765 45778889999999887 33566777777766667777766666655421100000
Q ss_pred HHHhh---h-hcccchHHHHHHhccCCH--HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHH
Q 000145 628 LVQKG---S-AANKGLRSLVQVLNSSNE--ENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSAR 701 (2054)
Q Consensus 628 ~~~~~---l-~~~GaI~~LV~LLks~s~--evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~ 701 (2054)
.+... . ...+-+..|-..+.+.+. --|+.|.-.|.|+.. +..|..|++-+..++.-.|..++.
T Consensus 141 p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~-----------EeaI~al~~~l~~~SalfrhEvAf 209 (289)
T KOG0567|consen 141 PYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT-----------EEAINALIDGLADDSALFRHEVAF 209 (289)
T ss_pred ccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc-----------HHHHHHHHHhcccchHHHHHHHHH
Confidence 00000 0 011123444444433322 234555556666543 456788888888889999999999
Q ss_pred HHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCH
Q 000145 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTS 779 (2054)
Q Consensus 702 AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~ 779 (2054)
+++.|-. +. .|+.|.+.|.+ ..+.||.+|+.||+.++ .+..++.|.+++.+..+
T Consensus 210 VfGQl~s--~~------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D~~~ 265 (289)
T KOG0567|consen 210 VFGQLQS--PA------------AIPSLIKVLLDETEHPMVRHEAAEALGAIA----------DEDCVEVLKEYLGDEER 265 (289)
T ss_pred HHhhccc--hh------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhc----------CHHHHHHHHHHcCCcHH
Confidence 9999964 33 78889888876 67889999999999776 56688899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 000145 780 EGKKNASRALHQLL 793 (2054)
Q Consensus 780 evr~~Aa~AL~nL~ 793 (2054)
.+++.+..+|.-+-
T Consensus 266 vv~esc~valdm~e 279 (289)
T KOG0567|consen 266 VVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888886544
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0084 Score=77.08 Aligned_cols=409 Identities=14% Similarity=0.041 Sum_probs=243.8
Q ss_pred cHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
.+..+..-+.++++.+|+....+|.-+........ .....+.+.+++..++..-+..+++.++.+..+ ..-..+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNG--LGIESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcC--cHHhhh
Confidence 45677888888899999998888877765322111 122456677888888888899999999998753 233444
Q ss_pred HHcCChHHHHHhhccCChhHHHH-HHHHH----HHHHHhhchhhHHHH---HHHhcCCCcchHHHHHHHHHHHHhhhcch
Q 000145 555 ESAGAVPAFLWLLKSGGPKGQDA-SAMAL----TKLIRAADSATINQL---LALLLGDSPSSKAHVIKVLGHVLTMALQE 626 (2054)
Q Consensus 555 ~e~GaI~aLV~LLkS~~~evq~~-AA~AL----~nLs~~~e~~~Ip~L---v~LL~~~~~~V~~~a~~AL~~La~~~~~~ 626 (2054)
.+.+.+..|....++.....++. +.-+. .+|....+...++.+ ..-..+..+.++..+..+...+....+..
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~ 250 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY 250 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc
Confidence 56778888888877766544443 22111 122222234444444 44444666778888888877765443321
Q ss_pred HHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000145 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2054)
Q Consensus 627 d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nL 706 (2054)
.++ -.++.++.-+....+..+..++..+..+.. ..+..-...-..++|.+.+.|.+..+++|+.+..+|.++
T Consensus 251 -aVK------~llpsll~~l~~~kWrtK~aslellg~m~~-~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~ 322 (569)
T KOG1242|consen 251 -AVK------LLLPSLLGSLLEAKWRTKMASLELLGAMAD-CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF 322 (569)
T ss_pred -hhh------HhhhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 111 135555555555588999999999999988 455555666789999999999999999999999999999
Q ss_pred hCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC----ChHHHHHHHhcCcHHHHHHHHcCCCHHHH
Q 000145 707 SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS----DPDIAAEVLLEDVVSALTRVLAEGTSEGK 782 (2054)
Q Consensus 707 s~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~----~~e~r~~Iv~~g~I~~LV~LL~s~~~evr 782 (2054)
+..... +... -.++.|++.+.++...+. ++...|+.=.- ++.... -.+|.|-+-+.+.+..++
T Consensus 323 ~svidN-~dI~------~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLa-----lmvpiL~R~l~eRst~~k 389 (569)
T KOG1242|consen 323 GSVIDN-PDIQ------KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLA-----LMVPILKRGLAERSTSIK 389 (569)
T ss_pred HHhhcc-HHHH------HHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHH-----HHHHHHHHHHhhccchhh
Confidence 872211 1111 166778887776653333 23333331110 111111 123444456677788899
Q ss_pred HHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCc
Q 000145 783 KNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSS 862 (2054)
Q Consensus 783 ~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~ 862 (2054)
+.++.+..|++.--+....+...+ ...++.|-..+.+. ....+..+.++|+.+-+......+. ..
T Consensus 390 r~t~~IidNm~~LveDp~~lapfl--~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~~f~-----------d~ 454 (569)
T KOG1242|consen 390 RKTAIIIDNMCKLVEDPKDLAPFL--PSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEVSFD-----------DL 454 (569)
T ss_pred hhHHHHHHHHHHhhcCHHHHhhhH--HHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhhccc-----------cc
Confidence 999999999997432222222111 22344444444444 3456889999997665422111111 12
Q ss_pred hHHHHHhhhcCChh-HHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhhhHHHH
Q 000145 863 IEPLVCCLAEGPPP-LQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI 931 (2054)
Q Consensus 863 L~~Lv~ll~~~~~~-vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i 931 (2054)
++-+.+........ -+..+...|...+.... ++.-.+|+.++...+.+....+...+|-.+++
T Consensus 455 ~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~------v~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~ 518 (569)
T KOG1242|consen 455 IPELSETLTSEKSLVDRSGAAQDLSEVLAGLG------VEKVEDILPEILANASSVLIDERIRDGVIWLF 518 (569)
T ss_pred ccHHHHhhccchhhhhhHHHhhhHHHHHhccc------chHHHHHHHHHHHHHhhccchhhhccCeeehh
Confidence 33333333333333 36677777888777543 23334555666665555555544444444443
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0038 Score=78.54 Aligned_cols=347 Identities=15% Similarity=0.165 Sum_probs=217.2
Q ss_pred hcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchh
Q 000145 430 HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 430 ~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
..+.+++.+..+...+..++.+|+..+.|++.-.... ....-......+-++....+..++ .++..|-.+-..-...+
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTES 159 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhcccc
Confidence 3466788899999999999999999999988642111 111111223344555555554444 44555555543211111
Q ss_pred hHHHhhCCCchHhhhhhc----CCHHHHHHHHHHHHHHhcCChhHHHHHHH-cCChHHHHHhhccCChhHHHHHHHHHHH
Q 000145 510 WAITAAGGIPPLVQLLEA----GSQKAREVAAHVLWILCCHSEDIRACVES-AGAVPAFLWLLKSGGPKGQDASAMALTK 584 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s----~s~~Vre~AA~aL~nLa~~sd~~r~~I~e-~GaI~aLV~LLkS~~~evq~~AA~AL~n 584 (2054)
.. .-.++.++.+|+. .++..|......|..|-...+ .+++.- ....+.|+..|.+.++++|.-+-.+|.+
T Consensus 160 ~~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~--~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 160 AS---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD--LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cc---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc--HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 10 2346667777654 488999998888888854222 233221 4456778889999999999888888877
Q ss_pred HHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCH-HHHH
Q 000145 585 LIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNE-ENQE 655 (2054)
Q Consensus 585 Ls~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~-evre 655 (2054)
+-... ....++.++.-+.+.++.++..+..=+.-+... ..++.. ...+|.+..+...+.+..+ .+++
T Consensus 235 fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i-~g~~~l---~~~s~il~~iLpc~s~~e~~~i~~ 310 (675)
T KOG0212|consen 235 FLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKI-PGRDLL---LYLSGILTAILPCLSDTEEMSIKE 310 (675)
T ss_pred HHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcC-CCcchh---hhhhhhhhhcccCCCCCccccHHH
Confidence 75442 134677788888888888776553333322221 111111 1223444555555544443 3444
Q ss_pred HHHH---HHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhh
Q 000145 656 YAAS---VLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKL 732 (2054)
Q Consensus 656 ~Aa~---ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~L 732 (2054)
.+.. -|..+++ .+.....+--..++..+.+.+.++....|..+..-+..|-...+ .............|++-
T Consensus 311 ~a~~~n~~l~~l~s-~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p----~ql~~h~~~if~tLL~t 385 (675)
T KOG0212|consen 311 YAQMVNGLLLKLVS-SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP----GQLLVHNDSIFLTLLKT 385 (675)
T ss_pred HHHHHHHHHHHHHh-hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc----chhhhhccHHHHHHHHh
Confidence 4432 3455554 23222222222467888889999999999999988888876332 33344555678889999
Q ss_pred hhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 733 AKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 733 L~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
|.+.+++|...++..+++++.++..... -..+..|.++..++..-++..+..++.+||.-
T Consensus 386 Lsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~l 445 (675)
T KOG0212|consen 386 LSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLL 445 (675)
T ss_pred hcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHH
Confidence 9999999999999999999986654311 12344566777777777888899999998873
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.028 Score=69.46 Aligned_cols=345 Identities=14% Similarity=0.092 Sum_probs=216.4
Q ss_pred CcHHHHHHHHccC-CHHHHHHHHHHHHHhccCchhHHHHHhc------CC-hHHHHHhhccCCHHHHHHHHHHHHHHhcC
Q 000145 84 QAMPLFISILRSG-TPLAKVNVAATLSVLCKDEDLRLKVLLG------GC-IPPLLSLLKSESTDTRKAAAEALYEVSSG 155 (2054)
Q Consensus 84 GgVp~LV~LLks~-s~evr~~AA~vL~~Ls~~ee~r~~v~~~------Ga-Ip~LV~LL~sed~eVr~aAa~AL~nLS~~ 155 (2054)
..+..++.+++.. .++....+...+..+-.....|..+... .. -+..+.+|.+.|.-..+...+.+..++.+
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 4688888888775 5677777777776665555555444331 22 57888999999998888899999999987
Q ss_pred CCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHH
Q 000145 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQ 233 (2054)
Q Consensus 156 ~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq 233 (2054)
|.-+- .+.+.-+-. ..|-.++.+..+.+ ....+.++|-.+...++-| -.+..+.|+..++..+.+. +-..+
T Consensus 145 g~~~~-~~~e~~~~~---~~l~~~l~~~~~~~--~~~~~~rcLQ~ll~~~eyR-~~~v~adg~~~l~~~l~s~~~~~QlQ 217 (442)
T KOG2759|consen 145 GNCKM-ELSELDVYK---GFLKEQLQSSTNND--YIQFAARCLQTLLRVDEYR-YAFVIADGVSLLIRILASTKCGFQLQ 217 (442)
T ss_pred ccccc-cchHHHHHH---HHHHHHHhccCCCc--hHHHHHHHHHHHhcCcchh-heeeecCcchhhHHHHhccCcchhHH
Confidence 54211 111222222 23444555433233 4567889999999988766 5556678889999888532 35688
Q ss_pred HHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccH------HHHHHHHhcCCHHHHH
Q 000145 234 SNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSI------KAKKAVVAADGVPVLI 307 (2054)
Q Consensus 234 ~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~------e~Rk~I~eaggL~~LI 307 (2054)
-..+.++|.|.+. +...+.+...+.++.|..+++.+..+.|-+.+..++.|+..+.+ +....|+..+..+. +
T Consensus 218 YqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~-l 295 (442)
T KOG2759|consen 218 YQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT-L 295 (442)
T ss_pred HHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH-H
Confidence 8899999999854 33445566778999999999866667788888889999988643 23334443333333 3
Q ss_pred HhhcCC-chhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCccc
Q 000145 308 GAIVAP-SKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPF 386 (2054)
Q Consensus 308 eLL~s~-s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~ 386 (2054)
+.|... -.+ +--...+.++ .+-| ......++..+.+
T Consensus 296 ~~L~~rkysD-----------EDL~~di~~L-----------~e~L---------~~svq~LsSFDeY------------ 332 (442)
T KOG2759|consen 296 QSLEERKYSD-----------EDLVDDIEFL-----------TEKL---------KNSVQDLSSFDEY------------ 332 (442)
T ss_pred HHHHhcCCCc-----------HHHHHHHHHH-----------HHHH---------HHHHHhhccHHHH------------
Confidence 333221 100 0000111111 1100 0000111111111
Q ss_pred chhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcCh---------hhhHHHhhc--chHHHHHHHhccCC-HHHHHHHHH
Q 000145 387 DARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI---------FLSQWVSHA--EAKKVLIGLITMAT-ADVREYLIL 454 (2054)
Q Consensus 387 ~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~---------~~~~~L~~~--g~I~~LI~LL~ssd-~evq~~Aa~ 454 (2054)
.-.+. .|.+..+| ++...+.+. +.++.|+.+++.++ +.+...|+.
T Consensus 333 --------~sEl~---------------sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~ 389 (442)
T KOG2759|consen 333 --------KSELR---------------SGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACH 389 (442)
T ss_pred --------HHHHH---------------hCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhh
Confidence 00000 01111111 122223332 46788999998765 888888899
Q ss_pred HHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhh
Q 000145 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE 503 (2054)
Q Consensus 455 AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~ 503 (2054)
-++......|+.+..+.+.||=+.+.++++++|+++|.+|+.++..|-.
T Consensus 390 DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 390 DIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred hHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 9999999888888889899999999999999999999999999887765
|
|
| >KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.015 Score=71.83 Aligned_cols=314 Identities=14% Similarity=0.123 Sum_probs=206.2
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhh-------cchHHHHHHHhccCCHHHHHHHHHHHHHhcccCc
Q 000145 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH-------AEAKKVLIGLITMATADVREYLILSLTKLCRREV 464 (2054)
Q Consensus 392 e~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~-------~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~ 464 (2054)
...++.++.+.+.++....+..-+..+.....-+..+.+ ...-.+.+.++...+.-........+..++....
T Consensus 67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~ 146 (442)
T KOG2759|consen 67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFGN 146 (442)
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhcc
Confidence 356777777776665656665555555433222221111 1234667888888888888777788877766532
Q ss_pred cchhhhhccc-cHHHHHhhhcC-CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHH
Q 000145 465 GIWEAIGKRE-GIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVL 540 (2054)
Q Consensus 465 e~r~~Ive~g-gIp~LV~LL~s-~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL 540 (2054)
..-. ..+.. -...|...+++ .+......++.+|.-+.. .+++|..++.++++..++..+.++ +-.++-+...++
T Consensus 147 ~~~~-~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifci 224 (442)
T KOG2759|consen 147 CKME-LSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCI 224 (442)
T ss_pred cccc-chHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHH
Confidence 2110 00000 12234455555 567788889999999988 589999999999999999998433 778899999999
Q ss_pred HHHhcCChhHHHHHHHcCChHHHHHhhccCC-hhHHHHHHHHHHHHHHhhc-------------hhhHHHHHHHhc---C
Q 000145 541 WILCCHSEDIRACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKLIRAAD-------------SATINQLLALLL---G 603 (2054)
Q Consensus 541 ~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~-~evq~~AA~AL~nLs~~~e-------------~~~Ip~Lv~LL~---~ 603 (2054)
+-|+.+ +...+.+...+.++.|..++++.. +.+-+-+..++.|+..... .+-++.-++.|. .
T Consensus 225 WlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rky 303 (442)
T KOG2759|consen 225 WLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKY 303 (442)
T ss_pred HHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCC
Confidence 999985 445566678899999999998754 5677888888889876541 011233334443 2
Q ss_pred CCcchHHHH---HHHHHH----HHhh----------------h-cchHHHHhh---hh--cccchHHHHHHhccCC-HHH
Q 000145 604 DSPSSKAHV---IKVLGH----VLTM----------------A-LQEDLVQKG---SA--ANKGLRSLVQVLNSSN-EEN 653 (2054)
Q Consensus 604 ~~~~V~~~a---~~AL~~----La~~----------------~-~~~d~~~~~---l~--~~GaI~~LV~LLks~s-~ev 653 (2054)
+|++..... .+-|.+ |+.. . .+++++++- +. .-..++.|+.+|++++ +.+
T Consensus 304 sDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~i 383 (442)
T KOG2759|consen 304 SDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPII 383 (442)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCce
Confidence 333322111 111111 1110 0 011111111 11 1234788999998875 677
Q ss_pred HHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 654 QEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 654 re~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
-..|+.=+.......|+.+..+.+.|+=..+++++.+++++||-+|..|+..|-.
T Consensus 384 L~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 384 LCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred eehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 7777777888888899999999999999999999999999999999999988864
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.017 Score=75.21 Aligned_cols=300 Identities=16% Similarity=0.158 Sum_probs=200.4
Q ss_pred hhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcCh-------------hhhHHHh-----hcchHHHHHHHhccCCHHHH
Q 000145 388 ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI-------------FLSQWVS-----HAEAKKVLIGLITMATADVR 449 (2054)
Q Consensus 388 ~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~-------------~~~~~L~-----~~g~I~~LI~LL~ssd~evq 449 (2054)
..|..+++-.|-++..++++-..+..++..+..++ +...|+. ..+-+..++..+...|-.++
T Consensus 60 a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR 139 (970)
T KOG0946|consen 60 AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVR 139 (970)
T ss_pred HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhh
Confidence 34554555555555556667788888888875432 2233433 23678888999999999999
Q ss_pred HHHHHHHHHhcc-cCccchhhhh-ccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc
Q 000145 450 EYLILSLTKLCR-REVGIWEAIG-KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527 (2054)
Q Consensus 450 ~~Aa~AL~~Ls~-~s~e~r~~Iv-e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s 527 (2054)
.+++..+..+-. ...+.++.+. -.-||..++.++.+..+.+|..++-.|+.|+..++.....+.=.++...|..++..
T Consensus 140 ~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIee 219 (970)
T KOG0946|consen 140 LYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEE 219 (970)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHh
Confidence 999999988644 4455665544 45699999999999999999999999999999777776666667788889988865
Q ss_pred C---C-HHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhcc---CChhHHHHHHHHHHHHHHhhchhhHHHHHHH
Q 000145 528 G---S-QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS---GGPKGQDASAMALTKLIRAADSATINQLLAL 600 (2054)
Q Consensus 528 ~---s-~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS---~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~L 600 (2054)
. + .-+.+.|...|-||-.++..++..+.+.+-||.|.++|.- ++.++-.+...=..|+-. ++. +++.
T Consensus 220 EGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~-----~Lq-ivr~ 293 (970)
T KOG0946|consen 220 EGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIE-----ALQ-IVRS 293 (970)
T ss_pred cCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHH-----HHH-HHHH
Confidence 3 2 3678899999999999999999999999999999987753 332222222222222210 111 1111
Q ss_pred hcC-CCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccC--CHHHHHHHHHHHHHHhhcChhhhhhhhh
Q 000145 601 LLG-DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLAT 677 (2054)
Q Consensus 601 L~~-~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~--s~evre~Aa~ALanLas~~~e~r~~Iv~ 677 (2054)
+-. ++..-.. ...++.+...+.+..|..++-++ ..+++..+.-++++...++..+...+.+
T Consensus 294 lVsP~Nt~~~~----------------~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~ 357 (970)
T KOG0946|consen 294 LVSPGNTSSIT----------------HQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFAD 357 (970)
T ss_pred hcCCCCcHHHH----------------HHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 211 1111000 01123345667888888887766 4678888888899998887777766654
Q ss_pred CCC------HHH----HHHHhcc-CCHHHHHHHHHHHHHhhCC
Q 000145 678 DEI------VNP----CMRLLTS-NTQMVATQSARALGALSRP 709 (2054)
Q Consensus 678 ~g~------V~~----Lv~LL~d-gs~~vr~~AA~AL~nLs~s 709 (2054)
..+ .+. ++.+..+ .+...|...++++......
T Consensus 358 v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 358 VTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD 400 (970)
T ss_pred ccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc
Confidence 211 122 2233333 3557777888888887763
|
|
| >KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0032 Score=76.98 Aligned_cols=264 Identities=14% Similarity=0.115 Sum_probs=175.7
Q ss_pred hHHHhhcchHHHHHHHhccCCHHH--HHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcC-CChhhhHHHHHHHHHH
Q 000145 425 SQWVSHAEAKKVLIGLITMATADV--REYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAIL 501 (2054)
Q Consensus 425 ~~~L~~~g~I~~LI~LL~ssd~ev--q~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nL 501 (2054)
+..+...+++..|+.++...+.+. +..++..|-.+... ++++.+...| ...++.+.+. ...+.++..+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 345667789999999999887554 77888888776544 5666666544 4555555543 3456778889999999
Q ss_pred hhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCC-hhHHHHHHHcCChHHHHHhhccCChhHHHHHHH
Q 000145 502 TEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS-EDIRACVESAGAVPAFLWLLKSGGPKGQDASAM 580 (2054)
Q Consensus 502 s~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~s-d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~ 580 (2054)
-.|+.+....+++.|++..++--.+..+|.+.+.++-+|+|+..+. ...++.+++..+-+=|+-+..+.+.-++.+|+-
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 9999999999999999999998888889999999999999998764 345566667888888888888888889999999
Q ss_pred HHHHHHHhhc-------hh---hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCC
Q 000145 581 ALTKLIRAAD-------SA---TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSN 650 (2054)
Q Consensus 581 AL~nLs~~~e-------~~---~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s 650 (2054)
+...+....+ .+ .+.++++.+ ++... +. +..+..+. ....-++.|+.++.+.-
T Consensus 330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~~---DP~~F----------AR--D~hd~aQG--~~~d~LqRLvPlLdS~R 392 (832)
T KOG3678|consen 330 AVAVLATNKEVEREVRKSGTLALVEPLVASL---DPGRF----------AR--DAHDYAQG--RGPDDLQRLVPLLDSNR 392 (832)
T ss_pred HHhhhhhhhhhhHHHhhccchhhhhhhhhcc---Ccchh----------hh--hhhhhhcc--CChHHHHHhhhhhhcch
Confidence 9988876632 22 233333332 33211 11 01111111 12335788888887544
Q ss_pred HHHHHHHHHHHHHHhh-cChhhhhhh-hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 651 EENQEYAASVLADLFS-MRQDICGSL-ATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 651 ~evre~Aa~ALanLas-~~~e~r~~I-v~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
-+.+.-++--|..=+. .....+..+ -+-|+|..|-++..+.+..-...|.+||.-+..
T Consensus 393 ~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 393 LEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred hhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 4444333221111111 012222333 345889999998887666656667778776654
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.64 Score=59.32 Aligned_cols=582 Identities=13% Similarity=0.081 Sum_probs=290.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhc---CChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHH
Q 000145 90 ISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG---GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMK 165 (2054)
Q Consensus 90 V~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~---GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re 165 (2054)
...|++..|..-..|+..+..++.-+ +-.. |....|++-..+ +...++.+++.++.+.|... ++ +
T Consensus 100 l~aL~s~epr~~~~Aaql~aaIA~~E-----lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~---~P---e 168 (858)
T COG5215 100 LRALKSPEPRFCTMAAQLLAAIARME-----LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESE---AP---E 168 (858)
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHhh-----CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhcc---CH---H
Confidence 45667777777777777777765321 1111 445555555555 35668889999999999742 22 2
Q ss_pred HHH-HcCcH-HHH-HHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHH-hhCChHHHHhhhccCCHHHHHHHHHHHH
Q 000145 166 IFV-TEGVV-PTL-WDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL-EAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2054)
Q Consensus 166 ~Iv-~aG~V-p~L-v~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~-eaGGI~~LV~LL~s~s~evq~~A~~aL~ 241 (2054)
.++ ..+.+ -.+ ...++.. .+..++..++++|.+-+---.++...=. ..--++..+..-..++.+++..+..+|.
T Consensus 169 ~li~~sN~il~aiv~ga~k~e--t~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~ 246 (858)
T COG5215 169 DLIQMSNVILFAIVMGALKNE--TTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLN 246 (858)
T ss_pred HHHHHhhHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHH
Confidence 332 22322 222 2223322 3567888888888873321111000000 0113556666667778899999999999
Q ss_pred HHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhh
Q 000145 242 RLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQ 321 (2054)
Q Consensus 242 nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~ 321 (2054)
++..-..+.-+...+.-......+-+++ .+.++..++.+-...++.. +.--.+. +..+-. .
T Consensus 247 kim~LyY~fm~~ymE~aL~alt~~~mks-~nd~va~qavEfWsticeE--eid~~~e--------~~~~pe-~------- 307 (858)
T COG5215 247 KIMMLYYKFMQSYMENALAALTGRFMKS-QNDEVAIQAVEFWSTICEE--EIDGEME--------DKYLPE-V------- 307 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHHHHHHHHHH--HhhhHHH--------Hhhccc-C-------
Confidence 8884332222333333333334455553 4557777777666555542 1110110 000000 0
Q ss_pred hhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCC
Q 000145 322 RGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKP 401 (2054)
Q Consensus 322 ~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~ 401 (2054)
+.|.+.. ++ ..+++++..+...+.. ++++...+.+
T Consensus 308 ---p~qn~~f-a~------------------------aav~dvlP~lL~LL~~--q~ed~~~DdW--------------- 342 (858)
T COG5215 308 ---PAQNHGF-AR------------------------AAVADVLPELLSLLEK--QGEDYYGDDW--------------- 342 (858)
T ss_pred ---chhhcch-HH------------------------HHHHHHHHHHHHHHHh--cCCCcccccc---------------
Confidence 0111110 00 1112222222221111 0111111111
Q ss_pred CChhhHHHHHHHHHHH---hhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccc-hhhhhccccHH
Q 000145 402 HDNKLVQERVLEAMAS---LYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGI-WEAIGKREGIQ 477 (2054)
Q Consensus 402 ~~~e~Vq~~Aa~AL~~---L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~-r~~Ive~ggIp 477 (2054)
.+...|..+|-- ++++. +. .....+.-.-+++.+-.-++.++.+++..-....+. ...++ ...+|
T Consensus 343 ----n~smaA~sCLqlfaq~~gd~-----i~-~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp 411 (858)
T COG5215 343 ----NPSMAASSCLQLFAQLKGDK-----IM-RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALP 411 (858)
T ss_pred ----chhhhHHHHHHHHHHHhhhH-----hH-HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhH
Confidence 122222222221 11111 11 112233333455666666777888888776553322 22332 35677
Q ss_pred HHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC---CHHHHHHHHHHHHHHhcCChhHHH--
Q 000145 478 LLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG---SQKAREVAAHVLWILCCHSEDIRA-- 552 (2054)
Q Consensus 478 ~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~---s~~Vre~AA~aL~nLa~~sd~~r~-- 552 (2054)
.+..+..++.--++..++|+++.++.+-.+ .|-..|-+++.+.-+--+ .+.+..++.|...||..+-.+.-+
T Consensus 412 ~i~n~m~D~~l~vk~ttAwc~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~ 488 (858)
T COG5215 412 GIENEMSDSCLWVKSTTAWCFGAIADHVAM---IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREV 488 (858)
T ss_pred HHHHhcccceeehhhHHHHHHHHHHHHHHH---hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccc
Confidence 777777766667899999999999875322 233456677766654433 677888899999999764322110
Q ss_pred --HHHH--cCChHHHHHhh--ccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcch
Q 000145 553 --CVES--AGAVPAFLWLL--KSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQE 626 (2054)
Q Consensus 553 --~I~e--~GaI~aLV~LL--kS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~ 626 (2054)
.+.. ...+..|++-- ...+...|...=.+|+.+..- ..+.|. ..++.+......
T Consensus 489 ~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~---------------~~d~V~----~~~a~~~~~~~~- 548 (858)
T COG5215 489 ESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILI---------------CPDAVS----DILAGFYDYTSK- 548 (858)
T ss_pred cchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhh---------------cchhHH----HHHHHHHHHHHH-
Confidence 0100 11122222211 111223444444444444322 111111 111111111000
Q ss_pred HHHHhhhhcccchHHHHHHhccC----CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH-HHHHHHHH
Q 000145 627 DLVQKGSAANKGLRSLVQVLNSS----NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ-MVATQSAR 701 (2054)
Q Consensus 627 d~~~~~l~~~GaI~~LV~LLks~----s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~-~vr~~AA~ 701 (2054)
.+ ...+..+-+.+..+ -++++.+-+.+|..+....+...+. ++.-.+.-++++|.+.++ .+-...-.
T Consensus 549 -----kl--~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~-v~D~lm~Lf~r~les~~~t~~~~dV~~ 620 (858)
T COG5215 549 -----KL--DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIED-VEDQLMELFIRILESTKPTTAFGDVYT 620 (858)
T ss_pred -----HH--HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-HHHHHHHHHHHHHhccCCchhhhHHHH
Confidence 00 00122222222222 3566677777777775533222221 122256677777876544 33444566
Q ss_pred HHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC--CH
Q 000145 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG--TS 779 (2054)
Q Consensus 702 AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~--~~ 779 (2054)
++.+++.+. +.+....-...+|.|.+-|+..+..+...|++.++.|+..=+..-.+........|++++.+. +.
T Consensus 621 aIsal~~sl----~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~~~~R 696 (858)
T COG5215 621 AISALSTSL----EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSEATHR 696 (858)
T ss_pred HHHHHHHHH----HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChhhcc
Confidence 677777633 334444556688999999988888888899999999875222111223334567888888776 45
Q ss_pred HHHHHHHHHHHHhhh
Q 000145 780 EGKKNASRALHQLLK 794 (2054)
Q Consensus 780 evr~~Aa~AL~nL~~ 794 (2054)
++|-....+.+.++.
T Consensus 697 ~lKPaiLSvFgDIAl 711 (858)
T COG5215 697 DLKPAILSVFGDIAL 711 (858)
T ss_pred ccchHHHHHHHHHHH
Confidence 677766677666655
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.05 Score=73.25 Aligned_cols=414 Identities=17% Similarity=0.129 Sum_probs=263.4
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHH
Q 000145 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2054)
Q Consensus 433 ~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I 512 (2054)
..+..-+++....+.++..++.-+.+++..-. ......+.++.++++..++...+|..|...+.++...-...- =
T Consensus 238 lr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d 312 (759)
T KOG0211|consen 238 LRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--D 312 (759)
T ss_pred HHHHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--h
Confidence 34555667777888888888888888876522 255566788889999999889999999999888876321111 1
Q ss_pred HhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh---
Q 000145 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--- 589 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--- 589 (2054)
......+.+++..++++..++...+.....|...-. .......-+++...++++...+++...+.-...+....
T Consensus 313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~---~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~ 389 (759)
T KOG0211|consen 313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG---PSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNAS 389 (759)
T ss_pred hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc---cccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcc
Confidence 223467788888888888888888777777654111 11122345667777888877788877777666665442
Q ss_pred ------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHH
Q 000145 590 ------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD 663 (2054)
Q Consensus 590 ------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALan 663 (2054)
....+|.+..+..+.+++++...+.....+.-..+.+. .-....+.++..+++..++++.+....+..
T Consensus 390 ~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~------ti~~llp~~~~~l~de~~~V~lnli~~ls~ 463 (759)
T KOG0211|consen 390 CYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER------TISELLPLLIGNLKDEDPIVRLNLIDKLSL 463 (759)
T ss_pred cccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc------CccccChhhhhhcchhhHHHHHhhHHHHHH
Confidence 23456888888888888887665444443322212111 112346667778888899999999987777
Q ss_pred HhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHH
Q 000145 664 LFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743 (2054)
Q Consensus 664 Las~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~ 743 (2054)
+-..+.........+.-++.+..+-.+...+++....+.+..++.... ..+.+......+..-+.+....+++.
T Consensus 464 ~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~------~~~~~~~~~~l~~~~l~d~v~~Ir~~ 537 (759)
T KOG0211|consen 464 LEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG------VEFFDEKLAELLRTWLPDHVYSIREA 537 (759)
T ss_pred HHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh------hHHhhHHHHHHHHhhhhhhHHHHHHH
Confidence 655455555566667778888888888888888888888888875211 22333333333344466667788888
Q ss_pred HHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhcc
Q 000145 744 AVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNA 821 (2054)
Q Consensus 744 Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~s 821 (2054)
|+..|.-++. ...+. ....++.+.....+++-..|.....++.-+.. .+.+.+-+....+.+.++..+
T Consensus 538 aa~~l~~l~~~~G~~w~----~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~------v~g~ei~~~~Llp~~~~l~~D 607 (759)
T KOG0211|consen 538 AARNLPALVETFGSEWA----RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAE------VLGQEITCEDLLPVFLDLVKD 607 (759)
T ss_pred HHHHhHHHHHHhCcchh----HHHhhHHHHHHhcCcccchhhHHHHHHHHHHH------HhccHHHHHHHhHHHHHhccC
Confidence 8888887754 22232 12245555555555566777777777775553 333444455667777777765
Q ss_pred CCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHh
Q 000145 822 MDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRL 888 (2054)
Q Consensus 822 g~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L 888 (2054)
...+ .+..++..|..+.+--.. . .....-++.+..+..+.+..++.+|..+..-+
T Consensus 608 ~van--VR~nvak~L~~i~~~L~~-~---------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i 662 (759)
T KOG0211|consen 608 PVAN--VRINVAKHLPKILKLLDE-S---------VRDEEVLPLLETLSSDQELDVRYRAILAFGSI 662 (759)
T ss_pred Cchh--hhhhHHHHHHHHHhhcch-H---------HHHHHHHHHHHHhccCcccchhHHHHHHHHHH
Confidence 5444 488888777665531100 0 00112344555555566667888887766543
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.13 Score=67.48 Aligned_cols=438 Identities=15% Similarity=0.150 Sum_probs=238.0
Q ss_pred HHHHHHcCCCChhhHHHHHHH-HHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhh
Q 000145 393 DILVMLLKPHDNKLVQERVLE-AMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~-AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Iv 471 (2054)
.-|+.++++..+. .+..|.. .++-++.+.+... ..+..++...+.+.++++-.--.|...+...++.. +
T Consensus 38 ~dL~~lLdSnkd~-~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--L- 107 (968)
T KOG1060|consen 38 DDLKQLLDSNKDS-LKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--L- 107 (968)
T ss_pred HHHHHHHhccccH-HHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--e-
Confidence 3466777776655 4455554 4444455544332 34567777788888888777666666665533321 1
Q ss_pred ccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHH
Q 000145 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2054)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r 551 (2054)
=.|..+-+-|+++|+.+|..|+..|..+-.. ++..=.+-.+-++..+.++-+|..|+.++-.|=.-+.+.+
T Consensus 108 --LSIntfQk~L~DpN~LiRasALRvlSsIRvp-------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k 178 (968)
T KOG1060|consen 108 --LSINTFQKALKDPNQLIRASALRVLSSIRVP-------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK 178 (968)
T ss_pred --eeHHHHHhhhcCCcHHHHHHHHHHHHhcchh-------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence 2477888899999999998888877655331 1111011122234456689999999999988843222222
Q ss_pred HHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh-hcchH
Q 000145 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTM-ALQED 627 (2054)
Q Consensus 552 ~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~-~~~~d 627 (2054)
.. .+..+-.+|.+.+|-+.-.|+.+.-.++-+.- .+-...+..++.+-++--+....+.|..-++. ...+.
T Consensus 179 ~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~ 253 (968)
T KOG1060|consen 179 DQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPT 253 (968)
T ss_pred HH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcc
Confidence 22 23444568889999999999988877764410 11122334444332222222222222222211 00000
Q ss_pred HHHhh--------------------hhcccc----hHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHH
Q 000145 628 LVQKG--------------------SAANKG----LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNP 683 (2054)
Q Consensus 628 ~~~~~--------------------l~~~Ga----I~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~ 683 (2054)
..... .....- ++..-.++.+.++.+...++.++..++..+ -..+++++
T Consensus 254 ~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-------~~~~i~ka 326 (968)
T KOG1060|consen 254 VVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-------QVTKIAKA 326 (968)
T ss_pred ccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-------HHHHHHHH
Confidence 00000 000111 222333666778888899999999887521 12356789
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhh-HHhh-hhcCCH-HHHHHHHHHHHHhhCChHHHHH
Q 000145 684 CMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKP-LIKL-AKTSSI-DAAETAVAALANLLSDPDIAAE 760 (2054)
Q Consensus 684 Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~-Lv~L-L~s~d~-~Vre~Al~AL~NLa~~~e~r~~ 760 (2054)
|+++|++ ++.+|.-..+++.-++.-.+ +...| +-+. +.+.|+ .++.-=+..|.||+......
T Consensus 327 LvrLLrs-~~~vqyvvL~nIa~~s~~~~------------~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~-- 391 (968)
T KOG1060|consen 327 LVRLLRS-NREVQYVVLQNIATISIKRP------------TLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNIS-- 391 (968)
T ss_pred HHHHHhc-CCcchhhhHHHHHHHHhcch------------hhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH--
Confidence 9998876 34445545555555553111 12222 2222 233333 34445677777776432221
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000145 761 VLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2054)
Q Consensus 761 Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La 840 (2054)
..++.+..++.+.+..+-..|+.++++.+...- .+ ...++..|+.++++.+... ..++...+..|-
T Consensus 392 ----~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~---sv-----~~tCL~gLv~Llsshde~V--v~eaV~vIk~Ll 457 (968)
T KOG1060|consen 392 ----EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG---SV-----TDTCLNGLVQLLSSHDELV--VAEAVVVIKRLL 457 (968)
T ss_pred ----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC---ch-----hhHHHHHHHHHHhcccchh--HHHHHHHHHHHH
Confidence 134456677777777777777788877776421 11 1346677888887654433 556655555544
Q ss_pred hcc-------------------cCCCccCCccccccc-------CCCchHHHHHhhhcCChhHHHHHHHHHHHhhc
Q 000145 841 RTK-------------------QGLNFTYPPWAALAE-------VPSSIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2054)
Q Consensus 841 ~~~-------------------~~~~~i~~~~~~~~~-------~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~ 890 (2054)
..+ ....+....|..+.- .|..+..+.....++.++++-..++.-.++.-
T Consensus 458 q~~p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~laksFs~E~~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 458 QKDPAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEGDEVKLQILNLSAKLYL 533 (968)
T ss_pred hhChHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence 211 112222234554431 23344555566667777777777666666544
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.057 Score=64.35 Aligned_cols=404 Identities=13% Similarity=0.134 Sum_probs=222.1
Q ss_pred HHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCch-----hHHHHHhcCChHHHHHhhc
Q 000145 61 ITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED-----LRLKVLLGGCIPPLLSLLK 135 (2054)
Q Consensus 61 AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee-----~r~~v~~~GaIp~LV~LL~ 135 (2054)
+..+|..+-+..+.+.-. .+.+|.|-.-|..++..++.-+|+.++.+-.+.+ ....++..|..+.++.++.
T Consensus 63 cVscLERLfkakegahla----pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg 138 (524)
T KOG4413|consen 63 CVSCLERLFKAKEGAHLA----PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG 138 (524)
T ss_pred HHHHHHHHHhhccchhhc----hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc
Confidence 677777776555332211 2345566666677789999999999977755432 2334456799999999999
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhh
Q 000145 136 SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEA 215 (2054)
Q Consensus 136 sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~ea 215 (2054)
.+|.++-.+|.+.+..++. .+.+.+.++..... .+.. ++|++..
T Consensus 139 geddeVAkAAiesikrial-----fpaaleaiFeSell------------Ddlh--------lrnlaak----------- 182 (524)
T KOG4413|consen 139 GEDDEVAKAAIESIKRIAL-----FPAALEAIFESELL------------DDLH--------LRNLAAK----------- 182 (524)
T ss_pred CCcHHHHHHHHHHHHHHHh-----cHHHHHHhcccccC------------ChHH--------HhHHHhh-----------
Confidence 9999999999999999996 34444444432211 1111 2233221
Q ss_pred CChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHH
Q 000145 216 GGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKK 295 (2054)
Q Consensus 216 GGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk 295 (2054)
.++-++..+..++..++.-++.......++|.+..|..-|.-..|.-++..+......|... ...|+
T Consensus 183 ------------cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-eHgre 249 (524)
T KOG4413|consen 183 ------------CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-EHGRE 249 (524)
T ss_pred ------------hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-hhhhh
Confidence 11223344444455555444444455667888888888887446777888888888888873 55555
Q ss_pred HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHh
Q 000145 296 AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVF 375 (2054)
Q Consensus 296 ~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l 375 (2054)
-+.+.|.++.+...+...+++... .-+++....+..| . .. ++
T Consensus 250 flaQeglIdlicnIIsGadsdPfe-------kfralmgfgkffg--------------k-------------ea----im 291 (524)
T KOG4413|consen 250 FLAQEGLIDLICNIISGADSDPFE-------KFRALMGFGKFFG--------------K-------------EA----IM 291 (524)
T ss_pred hcchhhHHHHHHHHhhCCCCCcHH-------HHHHHHHHHHHhc--------------c-------------hH----Hh
Confidence 566667666666666543322100 0111111111111 0 00 00
Q ss_pred hcCCCCCCcccchhhHHHHH------HHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcch--HH-HHHHHhccCCH
Q 000145 376 EQKSGVDDEPFDARQIEDIL------VMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEA--KK-VLIGLITMATA 446 (2054)
Q Consensus 376 ~~~~~~~~~~~~~~gIe~~L------v~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~--I~-~LI~LL~ssd~ 446 (2054)
+......++.+. ...+.+.+++ ++..++.+++.+..+..-...+...+- .+ .+......+..
T Consensus 292 --------dvseeaicealiiaidgsfEmiEmnDpd-aieaAiDalGilGSnteGadlllkTgppaaehllarafdqnah 362 (524)
T KOG4413|consen 292 --------DVSEEAICEALIIAIDGSFEMIEMNDPD-AIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAH 362 (524)
T ss_pred --------hcCHHHHHHHHHHHHHhhHHhhhcCCch-HHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccccc
Confidence 000111111111 2334555554 889999999998766554444443332 22 23333444445
Q ss_pred HHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh
Q 000145 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE 526 (2054)
Q Consensus 447 evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~ 526 (2054)
.-|..+..+|.+++..-......+.+. ....+..+.+. ..+++ +. +..-...+...+.
T Consensus 363 akqeaaihaLaaIagelrlkpeqitDg-------------kaeerlrclif-daaaq-st-------kldPleLFlgilq 420 (524)
T KOG4413|consen 363 AKQEAAIHALAAIAGELRLKPEQITDG-------------KAEERLRCLIF-DAAAQ-ST-------KLDPLELFLGILQ 420 (524)
T ss_pred chHHHHHHHHHHhhccccCChhhcccc-------------HHHHHHHHHHH-HHHhh-cc-------CCChHHHHHHHHc
Confidence 556677788887776522222222221 11111111111 11111 11 1123344566777
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccC---ChhHHHHHHHHHHHHH
Q 000145 527 AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG---GPKGQDASAMALTKLI 586 (2054)
Q Consensus 527 s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~---~~evq~~AA~AL~nLs 586 (2054)
.+.++++..+..++..++...=..+.++.+.+.|.....--... ..+.++.++.++.+-.
T Consensus 421 QpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiaeaf 483 (524)
T KOG4413|consen 421 QPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAEAF 483 (524)
T ss_pred CCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999765444566666666665544322111 2356777777776654
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.015 Score=74.87 Aligned_cols=325 Identities=16% Similarity=0.110 Sum_probs=196.7
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc----hhhHHHHHHHhcCC
Q 000145 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----SATINQLLALLLGD 604 (2054)
Q Consensus 529 s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e----~~~Ip~Lv~LL~~~ 604 (2054)
+..+|++-.-.-+.++.|-......+ ...+..+++-+...++.+|+....+|..+....+ ....+-+.+++...
T Consensus 69 ~~~~~~~~~v~~~~~a~~~~~~d~~~--~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~ 146 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHLQIVDPRP--ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTST 146 (569)
T ss_pred hHHHhhhhHHHHHHHHHhccccCcch--hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccc
Confidence 44555554444444544322211111 2345667777778888999999988887765532 23456677777766
Q ss_pred CcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCH-HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHH
Q 000145 605 SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNE-ENQEYAASVLADLFSMRQDICGSLATDEIVNP 683 (2054)
Q Consensus 605 ~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~-evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~ 683 (2054)
+..-+..+...++.+..... .....+.+.+..|....++.+. .-|+.+.-++-..+. +-+...++..++.
T Consensus 147 ~~~~~~~aa~~~ag~v~g~~-----i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~----~Lg~~~EPyiv~~ 217 (569)
T KOG1242|consen 147 KIAERAGAAYGLAGLVNGLG-----IESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQG----NLGPPFEPYIVPI 217 (569)
T ss_pred cHHHHhhhhHHHHHHHcCcH-----HhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHH----hcCCCCCchHHhh
Confidence 65556666666665543211 1113455678888888877643 334433333333222 1223344555555
Q ss_pred HHHHh---ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHH
Q 000145 684 CMRLL---TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAE 760 (2054)
Q Consensus 684 Lv~LL---~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~ 760 (2054)
+-.++ .+..+.+|..|..+...+-+..+. .. -...+++++.-+.......+..++..|+.|+.....+-.
T Consensus 218 lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~---~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs 290 (569)
T KOG1242|consen 218 LPSILTNFGDKINKVREAAVEAAKAIMRCLSA---YA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS 290 (569)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHhcCc---ch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH
Confidence 54444 466778888887777777653332 11 122566666555555666777899999999876666666
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000145 761 VLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2054)
Q Consensus 761 Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La 840 (2054)
...+..+|.+.+.|.+.++++|+.+..+|-+++.-.... ++ ...++.|++.+.+.+.. ..+++..|+.-+
T Consensus 291 ~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~-dI------~~~ip~Lld~l~dp~~~---~~e~~~~L~~tt 360 (569)
T KOG1242|consen 291 LCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNP-DI------QKIIPTLLDALADPSCY---TPECLDSLGATT 360 (569)
T ss_pred HHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccH-HH------HHHHHHHHHHhcCcccc---hHHHHHhhccee
Confidence 777889999999999999999999999999999853221 12 23667788888654422 334444332211
Q ss_pred hcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhc
Q 000145 841 RTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2054)
Q Consensus 841 ~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~ 890 (2054)
-..+..++- ...-.+.|.+-+.+.+..++.+++.+..|++.
T Consensus 361 ----FV~~V~~ps-----LalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 361 ----FVAEVDAPS-----LALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred ----eeeeecchh-----HHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 111111110 11124556666677777799999999999987
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.87 Score=58.17 Aligned_cols=461 Identities=16% Similarity=0.136 Sum_probs=258.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCCh-hhhHHHHHHHHHHhhhccchhhHHH
Q 000145 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSE-QHQEYAVQLIAILTEQVDDSKWAIT 513 (2054)
Q Consensus 435 ~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~-~Vr~~Aa~aL~nLs~~s~e~r~~I~ 513 (2054)
-.+..++++.++..+...-.++..++.-..+.- -|...++.=+..+.+ .++-.|++.|...-..
T Consensus 68 f~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl------m~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~--------- 132 (898)
T COG5240 68 FAILKLFQHKDLYLRQCVYSAIKELSKLTEDVL------MGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDG--------- 132 (898)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhcchhhh------HHHHHHHHhhccCCccccccHHHHHHHHhcCc---------
Confidence 345677888888877766677777765432221 133445554455544 5777777777665442
Q ss_pred hhCCCchHhhhhhc----CCHHHHHHHHHHHHHHhcCChh-HHHHHHH-cCChHHHHHh---------hccCChhHHHHH
Q 000145 514 AAGGIPPLVQLLEA----GSQKAREVAAHVLWILCCHSED-IRACVES-AGAVPAFLWL---------LKSGGPKGQDAS 578 (2054)
Q Consensus 514 ~aGaIp~LV~LL~s----~s~~Vre~AA~aL~nLa~~sd~-~r~~I~e-~GaI~aLV~L---------LkS~~~evq~~A 578 (2054)
..++.+-++|++ ..+.++..|...-+.|-..+.. .++..-+ .+++-.+-.. -.++++-.|++|
T Consensus 133 --~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHa 210 (898)
T COG5240 133 --ETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHA 210 (898)
T ss_pred --chhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHH
Confidence 233333344443 3455555555555555433222 2222211 1222222111 012345567777
Q ss_pred HHHHHHHHHhh------------------------------------chhhHHHHHHHh----cCCCcchHHHHHHHHHH
Q 000145 579 AMALTKLIRAA------------------------------------DSATINQLLALL----LGDSPSSKAHVIKVLGH 618 (2054)
Q Consensus 579 A~AL~nLs~~~------------------------------------e~~~Ip~Lv~LL----~~~~~~V~~~a~~AL~~ 618 (2054)
...|+.+-+++ +.....++..+| ++.-+.|...+++++..
T Consensus 211 lGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~ 290 (898)
T COG5240 211 LGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCA 290 (898)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 77777665431 011222333333 34445677777777776
Q ss_pred HHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000145 619 VLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2054)
Q Consensus 619 La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~ 698 (2054)
++...-.++.++. .+..|-.+|++.....|-.|.++|..|+...|+.. .+. =+.+-.+..+.+..+...
T Consensus 291 ~~~~nv~~~~~~~------~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv-~vc----N~evEsLIsd~Nr~Isty 359 (898)
T COG5240 291 LSEENVGSQFVDQ------TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV-SVC----NKEVESLISDENRTISTY 359 (898)
T ss_pred HHHhccCHHHHHH------HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-eec----ChhHHHHhhcccccchHH
Confidence 6533223344333 47777788888888889999999999887443221 111 123344556666666665
Q ss_pred HHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHH-HHcC
Q 000145 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTR-VLAE 776 (2054)
Q Consensus 699 AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~-LL~s 776 (2054)
|...|-+-.. .+ .-++ .+..+..++++-+++-+.-+..++..|+. .|.-... .+..|.. ++.+
T Consensus 360 AITtLLKTGt--~e---~idr-----Lv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s-----~l~FL~~~L~~e 424 (898)
T COG5240 360 AITTLLKTGT--EE---TIDR-----LVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS-----YLDFLGSSLLQE 424 (898)
T ss_pred HHHHHHHcCc--hh---hHHH-----HHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH-----HHHHHHHHHHhc
Confidence 5555544322 22 1111 23334455565555555444444444443 2332222 3344554 5567
Q ss_pred CCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCccccc
Q 000145 777 GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAAL 856 (2054)
Q Consensus 777 ~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~ 856 (2054)
|.-+.++.++.++..+....|... +.++.-|+....+-+.+ .-+++.|+.|.+..+. ..
T Consensus 425 Gg~eFK~~~Vdaisd~~~~~p~sk--------EraLe~LC~fIEDcey~----~I~vrIL~iLG~EgP~---a~------ 483 (898)
T COG5240 425 GGLEFKKYMVDAISDAMENDPDSK--------ERALEVLCTFIEDCEYH----QITVRILGILGREGPR---AK------ 483 (898)
T ss_pred ccchHHHHHHHHHHHHHhhCchHH--------HHHHHHHHHHHhhcchh----HHHHHHHHHhcccCCC---CC------
Confidence 788899999999999888654211 33555566666544433 3567788888764321 11
Q ss_pred ccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhhhHHHHHhccc
Q 000145 857 AEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKE 936 (2054)
Q Consensus 857 ~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~~~k~ 936 (2054)
+....+..+..-+--++..+|.+|+.+|+++.-....+ .....|..+++|.++...+|||--++-.+=-+.
T Consensus 484 -~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~-- 554 (898)
T COG5240 484 -TPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR-- 554 (898)
T ss_pred -CcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh--
Confidence 01123555666666778889999999999875543221 123567899999999999999988877663222
Q ss_pred chhhhHHHH---hhcCCcHHHHHHHHHHhhhccCCC
Q 000145 937 HKKQSMDAL---DLSGYLKPLIYALVDMMKQNSSCS 969 (2054)
Q Consensus 937 ~~~~~~~~L---~~~g~~~~~i~~Lv~l~~~~~~~~ 969 (2054)
...+...| +.+|-++++-..|+--..|-+...
T Consensus 555 -~~da~~pl~~sd~~~dipsle~~l~~yIse~sf~t 589 (898)
T COG5240 555 -LSDACEPLFSSDELGDIPSLELELIGYISEDSFAT 589 (898)
T ss_pred -hhhhhhccccccccCCcchhHHhhheeeccccccc
Confidence 22222333 788888998888887776644433
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00093 Score=70.60 Aligned_cols=112 Identities=16% Similarity=0.151 Sum_probs=99.9
Q ss_pred cCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHh
Q 000145 443 MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLV 522 (2054)
Q Consensus 443 ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV 522 (2054)
..+.+.++....-|.|++.+ +.+...+.+...+..++..+...|+...+.++.+|||+|. +..+...|.+++++|.++
T Consensus 28 tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii 105 (173)
T KOG4646|consen 28 TTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLII 105 (173)
T ss_pred hccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEE
Confidence 45788888888999999998 8899999999999999999999999999999999999998 688999999999999999
Q ss_pred hhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000145 523 QLLEAGSQKAREVAAHVLWILCCHSEDIRACVES 556 (2054)
Q Consensus 523 ~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e 556 (2054)
..+.++...+...++.++..|...+..-|..+.+
T Consensus 106 ~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 106 FVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred eecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 9999999999999999999998765555555543
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.12 Score=67.21 Aligned_cols=216 Identities=18% Similarity=0.226 Sum_probs=132.7
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHH
Q 000145 219 DIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVV 298 (2054)
Q Consensus 219 ~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~ 298 (2054)
+-+..+|++.-+-++..|+.+|++++..-|+.. .-+.|.|..-|. ++|+.++..|..+++.|+.++|++.-.+.
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLe-DpDp~V~SAAV~VICELArKnPknyL~LA 220 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLE-DPDPSVVSAAVSVICELARKNPQNYLQLA 220 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhcc-CCCchHHHHHHHHHHHHHhhCCccccccc
Confidence 456778888889999999999999995443322 237899999998 68999999999999999999887775554
Q ss_pred hcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcC
Q 000145 299 AADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQK 378 (2054)
Q Consensus 299 eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~ 378 (2054)
|.+..++.+.+... .+..+.++.|.+.++= |+...+..
T Consensus 221 -----P~ffkllttSsNNW------------mLIKiiKLF~aLtplE---------PRLgKKLi---------------- 258 (877)
T KOG1059|consen 221 -----PLFYKLLVTSSNNW------------VLIKLLKLFAALTPLE---------PRLGKKLI---------------- 258 (877)
T ss_pred -----HHHHHHHhccCCCe------------ehHHHHHHHhhccccC---------chhhhhhh----------------
Confidence 66777776655332 2333344444333321 12111111
Q ss_pred CCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHH--Hhh-cChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHH
Q 000145 379 SGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMA--SLY-GNIFLSQWVSHAEAKKVLIGLITMATADVREYLILS 455 (2054)
Q Consensus 379 ~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~--~L~-~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~A 455 (2054)
+.|..++.+...-.+--.++.++. ++. +.++....+ .-+++-|-.++.++|+..+.-++-+
T Consensus 259 --------------eplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 259 --------------EPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred --------------hHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHH
Confidence 122222222111111111111111 111 111111110 1245566677888889988888888
Q ss_pred HHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhh
Q 000145 456 LTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE 503 (2054)
Q Consensus 456 L~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~ 503 (2054)
+..+...++...++ --..++++|.+.|+.+|..|+..|..+..
T Consensus 323 m~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 323 MSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 88888765433221 23457889999999999999999988876
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.06 Score=66.88 Aligned_cols=309 Identities=16% Similarity=0.129 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcc-----cCccchhhhhccccHHH---
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCR-----REVGIWEAIGKREGIQL--- 478 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~-----~s~e~r~~Ive~ggIp~--- 478 (2054)
+|..+...|..++..-..-+. ......+.+-.-+....++++..++..+..+.. ..++.++.-...+..-.
T Consensus 271 ~rle~~qvl~~~a~~~~~~~~-~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l 349 (728)
T KOG4535|consen 271 MRLEALQVLTLLARYFSMTQA-YLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMML 349 (728)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHc
Confidence 666666666655443321111 000111222223355678889988887766543 22333222222221111
Q ss_pred ---HH-hhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCC-CchHhhhhhcC---CHHHHHHHHHHHHHHhcCChhH
Q 000145 479 ---LI-SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGG-IPPLVQLLEAG---SQKAREVAAHVLWILCCHSEDI 550 (2054)
Q Consensus 479 ---LV-~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGa-Ip~LV~LL~s~---s~~Vre~AA~aL~nLa~~sd~~ 550 (2054)
+- ..+.+..+..+...+.++.+++.....+- ..|- ...++-++... +.-++..|.+.+.-+..|..-.
T Consensus 350 ~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~l----pn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr 425 (728)
T KOG4535|consen 350 NGPLPRALYDSEHPTLQASACDALSSILPEAFSNL----PNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLR 425 (728)
T ss_pred cCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCC----CCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchh
Confidence 01 12233344556677777777764211100 0010 11111122111 2234445555555554443222
Q ss_pred HHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 551 r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
....--..+...+...+.+..-..|.+++|+++|++.. |-++-|.++....++.+.+
T Consensus 426 ~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdA------------L~~~~Ps~~s~~eR~sg~l----------- 482 (728)
T KOG4535|consen 426 QDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDA------------LIVNMPTPDSFQERFSGLL----------- 482 (728)
T ss_pred hhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHH------------HHcCCCCchHHHHHHHHHH-----------
Confidence 22222234455556666777778999999999999754 3445555555555555543
Q ss_pred hhhhcccchHHHHHHh---ccCCHHHHHHHHHHHHHHhhcChhh----hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHH
Q 000145 631 KGSAANKGLRSLVQVL---NSSNEENQEYAASVLADLFSMRQDI----CGSLATDEIVNPCMRLLTSNTQMVATQSARAL 703 (2054)
Q Consensus 631 ~~l~~~GaI~~LV~LL---ks~s~evre~Aa~ALanLas~~~e~----r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL 703 (2054)
+..++... ...+++++.++.++|.|+...-... -+.+.+...+.-+....-.+.-.+|-+|+.++
T Consensus 483 --------l~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~ 554 (728)
T KOG4535|consen 483 --------LLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAM 554 (728)
T ss_pred --------HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHH
Confidence 22223322 2347889999999999997631111 11122222222223333456778999999999
Q ss_pred HHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhC
Q 000145 704 GALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLS 753 (2054)
Q Consensus 704 ~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~Al~AL~NLa~ 753 (2054)
+||... +.. .....-....+.+.|..++.+ .+-.||..|+.+|..-..
T Consensus 555 gNLfkn-~a~-~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 555 GNLFKN-PAL-PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHhhcC-ccc-cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 999962 110 011111122355667777766 677889999999976543
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.23 E-value=1.3 Score=56.83 Aligned_cols=287 Identities=13% Similarity=0.088 Sum_probs=133.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHh
Q 000145 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2054)
Q Consensus 435 ~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~ 514 (2054)
+.|-..+.+.-+-++.+++.+++.++..+ .....+ ...+..|-.+|++.....|..|++.|..|+...++.- .+
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv-~v-- 340 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV-SV-- 340 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee-ee--
Confidence 44455555555677778888777776653 122222 1345667777788777788888888888877443311 00
Q ss_pred hCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhH
Q 000145 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATI 594 (2054)
Q Consensus 515 aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~I 594 (2054)
+=+.+-.|..+.+..+-..|...|..-+. ++.+..++ ..|+.+++=+.++-..+.-.+...|..+.-......+
T Consensus 341 --cN~evEsLIsd~Nr~IstyAITtLLKTGt-~e~idrLv---~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l 414 (898)
T COG5240 341 --CNKEVESLISDENRTISTYAITTLLKTGT-EETIDRLV---NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYL 414 (898)
T ss_pred --cChhHHHHhhcccccchHHHHHHHHHcCc-hhhHHHHH---HHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHH
Confidence 11122223333343444444444433322 11111111 1222222222222222223333333333222222223
Q ss_pred HHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhh
Q 000145 595 NQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICG 673 (2054)
Q Consensus 595 p~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~ 673 (2054)
.-|...|. .+.-+-+.++..++.-+....+ +.. ..++..|+.++.+ -+--+-++++|.-|....|....
T Consensus 415 ~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p--~sk------EraLe~LC~fIED--cey~~I~vrIL~iLG~EgP~a~~ 484 (898)
T COG5240 415 DFLGSSLLQEGGLEFKKYMVDAISDAMENDP--DSK------ERALEVLCTFIED--CEYHQITVRILGILGREGPRAKT 484 (898)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHhhCc--hHH------HHHHHHHHHHHhh--cchhHHHHHHHHHhcccCCCCCC
Confidence 33332222 2222333333333333221111 110 0123444444422 12223333444444331111000
Q ss_pred hhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 674 SLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 674 ~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
-...+..+..-+--++.-+|..|..||.+++..... ......+...|-.++++.|+++|..|...|.|+-
T Consensus 485 ---P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d------~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 485 ---PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD------VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ---cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc------cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 011234444433345677899999999888762211 1112235556778899999999999999999985
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0029 Score=80.64 Aligned_cols=295 Identities=14% Similarity=0.107 Sum_probs=185.8
Q ss_pred HHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCC------h-
Q 000145 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS------E- 548 (2054)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~s------d- 548 (2054)
...|..+....+..++..|+.+|..|+.. -.... -.....++++.+.+.++|..|...++-.+.-. +
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg-~kL~~-----~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEG-FKLSK-----ACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccc-ccccH-----HHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 34488888889999999999999888763 22111 13456678889999999999876665544311 1
Q ss_pred hHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCC-----cchHHHHHHHHHHHH---
Q 000145 549 DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDS-----PSSKAHVIKVLGHVL--- 620 (2054)
Q Consensus 549 ~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~-----~~V~~~a~~AL~~La--- 620 (2054)
+.+++. ..+...++..+++.+-.+|-.|+.+|+.+..-.+.-....|-+-+-++. .+.+......=|-.+
T Consensus 274 ~e~kl~--D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk 351 (823)
T KOG2259|consen 274 EEEKLK--DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGK 351 (823)
T ss_pred hhhhhH--HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCc
Confidence 112222 3467788899999999999999999998876544222222222221110 000000000000000
Q ss_pred ---hhhcc--hHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHH
Q 000145 621 ---TMALQ--EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMV 695 (2054)
Q Consensus 621 ---~~~~~--~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~v 695 (2054)
...++ .+.-...+..+|+-.++|+-++++=.++|++|+..++.|+..++.... ..+.-|+.++.|+-..+
T Consensus 352 ~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~V 426 (823)
T KOG2259|consen 352 EWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVV 426 (823)
T ss_pred cccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHH
Confidence 00000 011112255677778888888877889999999999999886665543 35788999999999999
Q ss_pred HHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHc
Q 000145 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA 775 (2054)
Q Consensus 696 r~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~ 775 (2054)
|..|..+|..++... .++++-++.+++.|.+.+.++|++.-..|++.-......-.+.-.+.+..|..
T Consensus 427 RL~ai~aL~~Is~~l---------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~k--- 494 (823)
T KOG2259|consen 427 RLKAIFALTMISVHL---------AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLGK--- 494 (823)
T ss_pred HHHHHHHHHHHHHHh---------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhh---
Confidence 999999999998621 13445778899999999999999888888876433322222211122222222
Q ss_pred CCCHHHHHHHHHHHHHhhhcCC
Q 000145 776 EGTSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 776 s~~~evr~~Aa~AL~nL~~~~~ 797 (2054)
-|+-|...-.|+.+++++.+
T Consensus 495 --yPqDrd~i~~cm~~iGqnH~ 514 (823)
T KOG2259|consen 495 --YPQDRDEILRCMGRIGQNHR 514 (823)
T ss_pred --CCCCcHHHHHHHHHHhccCh
Confidence 23334456677888887653
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.33 Score=64.31 Aligned_cols=426 Identities=19% Similarity=0.163 Sum_probs=231.0
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhh
Q 000145 55 PQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLL 134 (2054)
Q Consensus 55 ~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL 134 (2054)
.+-|.-+--+|.+.+...+.-. -+++..+++=..++++.+|..|.+.++.+--+.-. .-.+.+|.+.+
T Consensus 63 lelKKlvyLYl~nYa~~~P~~a------~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~------ey~~~Pl~~~l 130 (734)
T KOG1061|consen 63 LELKKLVYLYLMNYAKGKPDLA------ILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKIT------EYLCDPLLKCL 130 (734)
T ss_pred chHHHHHHHHHHHhhccCchHH------HhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHH------HHHHHHHHHhc
Confidence 3334444445555555543321 25677777777888999999999998877432211 13458899999
Q ss_pred ccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHh
Q 000145 135 KSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE 214 (2054)
Q Consensus 135 ~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~e 214 (2054)
+++++.+|..++-....+-.. +.+...+.|.++.|.+++.+.+ +.++.+|+.+|..+...+.+.......
T Consensus 131 ~d~~~yvRktaa~~vakl~~~-------~~~~~~~~gl~~~L~~ll~D~~---p~VVAnAlaaL~eI~e~~~~~~~~~l~ 200 (734)
T KOG1061|consen 131 KDDDPYVRKTAAVCVAKLFDI-------DPDLVEDSGLVDALKDLLSDSN---PMVVANALAALSEIHESHPSVNLLELN 200 (734)
T ss_pred cCCChhHHHHHHHHHHHhhcC-------ChhhccccchhHHHHHHhcCCC---chHHHHHHHHHHHHHHhCCCCCccccc
Confidence 999999999999888888752 2557788999999999998443 558889999999998776431000000
Q ss_pred hCChHHHHhhhccCCHHHHHHH-HHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHH
Q 000145 215 AGGVDIIVGLLSSDNAAAQSNA-ASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKA 293 (2054)
Q Consensus 215 aGGI~~LV~LL~s~s~evq~~A-~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~ 293 (2054)
.--+..++..+. ++.+.. +.+|-++....+..... ....+..+...+++. +..+...+...+.++...-+.
T Consensus 201 ~~~~~~lL~al~----ec~EW~qi~IL~~l~~y~p~d~~e--a~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~~- 272 (734)
T KOG1061|consen 201 PQLINKLLEALN----ECTEWGQIFILDCLAEYVPKDSRE--AEDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLKQ- 272 (734)
T ss_pred HHHHHHHHHHHH----HhhhhhHHHHHHHHHhcCCCCchh--HHHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHHH-
Confidence 001111222221 222222 23333333222211100 112333334444432 234444455555554443122
Q ss_pred HHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHH
Q 000145 294 KKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALM 373 (2054)
Q Consensus 294 Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~ 373 (2054)
.....-...-+.++.++..++ + +| ..+|.|+ +....
T Consensus 273 ~~~~~~~K~~~pl~tlls~~~-e-~q-----------yvaLrNi-------------------------------~lil~ 308 (734)
T KOG1061|consen 273 VNELLFKKVAPPLVTLLSSES-E-IQ-----------YVALRNI-------------------------------NLILQ 308 (734)
T ss_pred HHHHHHHHhcccceeeecccc-h-hh-----------HHHHhhH-------------------------------HHHHH
Confidence 111221222333444443333 1 11 1122232 11111
Q ss_pred HhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHH
Q 000145 374 VFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLI 453 (2054)
Q Consensus 374 ~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa 453 (2054)
+.+ +.+.. .+.+-..+..++--++..=..++..++....+.+.+. -+......-+.+..+.++
T Consensus 309 ~~p-------~~~~~----~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~------El~eYatevD~~fvrkaI 371 (734)
T KOG1061|consen 309 KRP-------EILKV----EIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLA------ELKEYATEVDVDFVRKAV 371 (734)
T ss_pred hCh-------HHHHh----HhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHH------HHHHhhhhhCHHHHHHHH
Confidence 110 01110 1122233444444466666666666655544433221 123333445788888999
Q ss_pred HHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc-CCHHH
Q 000145 454 LSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKA 532 (2054)
Q Consensus 454 ~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s-~s~~V 532 (2054)
+++++++..-.+. .+.|+.|+++++..-.-+...+...++.+.+..+..-..+. +.+..-+.+ .+|+.
T Consensus 372 raig~~aik~e~~------~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv-----~~l~~~~~sl~epea 440 (734)
T KOG1061|consen 372 RAIGRLAIKAEQS------NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVV-----AILCENLDSLQEPEA 440 (734)
T ss_pred HHhhhhhhhhhhh------hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhh-----hhhcccccccCChHH
Confidence 9999998763221 57889999999987777777788888888886665433332 222222333 37888
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 000145 533 REVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 533 re~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
|..-.|.++.-+..-++.- ..+..+++-.+++..++|..-..+...++-.
T Consensus 441 k~amiWilg~y~~~i~~a~------elL~~f~en~~dE~~~Vql~LLta~ik~Fl~ 490 (734)
T KOG1061|consen 441 KAALIWILGEYAERIENAL------ELLESFLENFKDETAEVQLELLTAAIKLFLK 490 (734)
T ss_pred HHHHHHHHhhhhhccCcHH------HHHHHHHhhcccchHHHHHHHHHHHHHHHhc
Confidence 8888888887654322211 1233444455566677777777766666544
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.11 Score=67.67 Aligned_cols=211 Identities=15% Similarity=0.131 Sum_probs=139.9
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhc-ChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhh
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYG-NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG 471 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~-n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Iv 471 (2054)
+-++.++.+..+- +|..|+..+-.++- .++. -..+++.|..-|.++|+.+|-.|+..++.|+..+|.+.-.+
T Consensus 147 ~Dv~tLL~sskpY-vRKkAIl~lykvFLkYPeA-----lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L- 219 (877)
T KOG1059|consen 147 DDVFTLLNSSKPY-VRKKAILLLYKVFLKYPEA-----LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL- 219 (877)
T ss_pred HHHHHHHhcCchH-HHHHHHHHHHHHHHhhhHh-----HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-
Confidence 3455677776664 88888877776632 2211 12467889999999999999999999999999988776554
Q ss_pred ccccHHHHHhhhcCCC-hhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCH-HHHHHHHHHHH--HHhcCC
Q 000145 472 KREGIQLLISLLGLSS-EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQ-KAREVAAHVLW--ILCCHS 547 (2054)
Q Consensus 472 e~ggIp~LV~LL~s~d-~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~-~Vre~AA~aL~--nLa~~s 547 (2054)
-|.+..++.+++ .=+-..-+..+++|+...+... ...+++|..++++.+. .+...+..++- ++....
T Consensus 220 ----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLg-----KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~ 290 (877)
T KOG1059|consen 220 ----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLG-----KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM 290 (877)
T ss_pred ----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhh-----hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC
Confidence 377888777554 4466677788888877444322 3467888888877532 22222222221 333221
Q ss_pred hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhch---hhHHHHHHHhcCCCcchHHHHHHHHHHHHh
Q 000145 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS---ATINQLLALLLGDSPSSKAHVIKVLGHVLT 621 (2054)
Q Consensus 548 d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~---~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~ 621 (2054)
.+..+.+ .=+++.|-.++.+.++.+++-+.-+++.+....-. .--..+++.|.+.|+.++..+.+.|-.+..
T Consensus 291 ~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 291 SDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred CCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 1111111 22566777788999999999999999999866321 123457888999999999887777665543
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.88 Score=60.36 Aligned_cols=281 Identities=15% Similarity=0.101 Sum_probs=153.3
Q ss_pred HHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHH
Q 000145 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE 555 (2054)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~ 555 (2054)
.+-+-.++++..+-+...++.++.++...+.. . +. .++..|--+|.++....|-.|.++|..++...+.. +
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r--~-l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~---v- 317 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSR--E-LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA---V- 317 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHh--h-cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---c-
Confidence 34456678888888999999999888653222 1 11 14555656678888999999999999987632210 0
Q ss_pred HcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHH---hcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000145 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLAL---LLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2054)
Q Consensus 556 e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-~~~Ip~Lv~L---L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~ 631 (2054)
.-+=.-|-.+..+.+..+-..|..+|..-..... ...+.+...+ +.++..-+...+.++|.... +.+
T Consensus 318 -~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p~k----- 388 (865)
T KOG1078|consen 318 -TVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---PRK----- 388 (865)
T ss_pred -cccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---cHH-----
Confidence 0000111112222222222222222222211100 0111111112 22333333334444443321 111
Q ss_pred hhhcccchHHHHHHhcc-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 000145 632 GSAANKGLRSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLks-~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~ 710 (2054)
..+.+.-|..+|+. +.-+-+...+.++..+...+++.+ +.++..|+....|.. -..-+.+.|+-|..-.
T Consensus 389 ---~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK-----e~~L~~LCefIEDce--~~~i~~rILhlLG~Eg 458 (865)
T KOG1078|consen 389 ---HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK-----ERGLEHLCEFIEDCE--FTQIAVRILHLLGKEG 458 (865)
T ss_pred ---HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh-----hHHHHHHHHHHHhcc--chHHHHHHHHHHhccC
Confidence 11235556666654 345666666666666655444433 234566666665422 2334566667666522
Q ss_pred CcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 000145 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2054)
Q Consensus 711 ~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL 789 (2054)
|.. ..-...++.+.+.+.-.+.-+|.+|+.+|+++.. ++.. .+.....|.+++.+.++++|+.|...|
T Consensus 459 P~a------~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l 527 (865)
T KOG1078|consen 459 PKA------PNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYL 527 (865)
T ss_pred CCC------CCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHH
Confidence 220 0112355666666666788899999999999973 3332 334555677899999999999999999
Q ss_pred HHhhhc
Q 000145 790 HQLLKH 795 (2054)
Q Consensus 790 ~nL~~~ 795 (2054)
.++-..
T Consensus 528 ~~l~~~ 533 (865)
T KOG1078|consen 528 KNLEEK 533 (865)
T ss_pred HHhhhh
Confidence 998843
|
|
| >KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.003 Score=66.93 Aligned_cols=120 Identities=16% Similarity=0.139 Sum_probs=104.2
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhc
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK 472 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive 472 (2054)
..|+.-+....+.+.|+.+.--|.|.+.++.++..+.+.+.+...+.-+...++...+.++..|+|+|.+ +.+...|.+
T Consensus 19 q~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I~e 97 (173)
T KOG4646|consen 19 QHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFIRE 97 (173)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHHHH
Confidence 4555555556566689999999999999999999999999999999999999999999999999999998 788999999
Q ss_pred cccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHH
Q 000145 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513 (2054)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~ 513 (2054)
.+|+|..+..+.++.+.+...++..+..|+......|..+.
T Consensus 98 a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 98 ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 99999999999999999999999999999885444454443
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=4.5 Score=58.88 Aligned_cols=698 Identities=17% Similarity=0.139 Sum_probs=311.9
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHcc-C-CHHHHHHHHHHH-HHhccCchhHHHHHhcCChHHHHH
Q 000145 56 QERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-G-TPLAKVNVAATL-SVLCKDEDLRLKVLLGGCIPPLLS 132 (2054)
Q Consensus 56 ~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks-~-s~evr~~AA~vL-~~Ls~~ee~r~~v~~~GaIp~LV~ 132 (2054)
.+.+.+...|..+....+..++.+. ..+|-.++..+.. + +++++ +++..| ..++.+...+..+ ....+-..+.
T Consensus 179 ~~c~~aa~~la~~~~~~d~~~~~~~--~q~ia~~lNa~sKWp~~~~c~-~aa~~la~~l~~~~~l~~~~-~~q~va~~lN 254 (2710)
T PRK14707 179 PDCQAVAPRFAALVASDDRLRSAMD--AQGVATVLNALCKWPDTPDCG-NAVSALAERLADESRLRNEL-KPQELGNALN 254 (2710)
T ss_pred chHHHHHHHHHHHhcCChhhhcccc--hHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHcCcHHHHHhC-ChHHHHHHHH
Confidence 3456666777666655566666663 4677777766643 4 45555 555555 6666664443333 3455666677
Q ss_pred hhcc-CCHHHHHHHHHHH-HHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHH-HHhcCCCchh
Q 000145 133 LLKS-ESTDTRKAAAEAL-YEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALR-NLCGDKDGYW 209 (2054)
Q Consensus 133 LL~s-ed~eVr~aAa~AL-~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~-nL~~~~e~r~ 209 (2054)
.|.. .+..+...++.+| ..++. +..-++.+ +.-.|.-.++-|..-. +..++..+...|. .|..+. .-.
T Consensus 255 ~lsKwp~~~~C~~a~~~lA~rl~~-----~~~l~~al-~~q~vanalNalSKwp--d~~vc~~Aa~~la~rl~~d~-~l~ 325 (2710)
T PRK14707 255 ALSKWADTPVCAAAASALAERLVD-----DPGLRKAL-DPINVTQALNALSKWA--DLPVCAEAAIALAERLADDP-ELC 325 (2710)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhh-----hHHHHHhc-CHHHHHHHHhhhhcCC--CchHHHHHHHHHHHHHhccH-hhh
Confidence 7766 5554444444444 44543 22223333 3333333344443222 2234444444443 333322 111
Q ss_pred HHHHhhCChHHHHhhhcc-CC-HHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHh
Q 000145 210 RATLEAGGVDIIVGLLSS-DN-AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALS 287 (2054)
Q Consensus 210 ~aI~eaGGI~~LV~LL~s-~s-~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs 287 (2054)
. -.+.-++...+.-|+. ++ ..++..+..+-..++ .+++.++.+. ..++...++.+.+=++..+...++..|..=.
T Consensus 326 ~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~-~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l 402 (2710)
T PRK14707 326 K-ALNARGLSTALNALSKWPDNPVCAAAVSALAERLV-ADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHV 402 (2710)
T ss_pred h-ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-cCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHh
Confidence 1 1222244555555543 33 455555555555565 4444444443 4456666777764455555555555555444
Q ss_pred hccHHHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhhhHHHHHHHH-------HhcCchh-HHHHhhhhcCC-CCc
Q 000145 288 SKSIKAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALAN-------IYGGMPA-LVVYLGELSQS-PRL 357 (2054)
Q Consensus 288 ~~s~e~Rk~I~eaggL~~LIeLL~s-~s~e~~q~~~~~~lqe~Al~ALan-------LsGgis~-lI~~L~elL~s-~~~ 357 (2054)
.+.++.++.+-. .++..+++.+.. |+.. ....+..+|+- ++..+.+ .|.....-+.. |+.
T Consensus 403 ~~d~~l~~~~~~-Q~van~lnalsKWPd~~---------~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~ 472 (2710)
T PRK14707 403 VDDLELRKGLDP-QGVSNALNALAKWPDLP---------ICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDT 472 (2710)
T ss_pred ccChhhhhhcch-hhHHHHHHHhhcCCcch---------hHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCC
Confidence 445788877754 444555555543 4322 22223333332 1112221 12222222221 222
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHH
Q 000145 358 AAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVL 437 (2054)
Q Consensus 358 ~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~L 437 (2054)
..+..+...|+-.+.+ ....++.|+...+...|-.+-|.++.......+...-+.+.......+.+...+....+
T Consensus 473 -p~c~~aa~~La~~l~~----~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~~l 547 (2710)
T PRK14707 473 -PICGQTASALAARLAH----ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDELQLRKAFDAHQVVNTL 547 (2710)
T ss_pred -hhHHHHHHHHHHHhcc----cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHH
Confidence 2222222223322221 12245677777888888888888875422222222222333333444444444444555
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhh-cCCChhhhHHHHHHHHHHhhhccchhhHHHhhC
Q 000145 438 IGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516 (2054)
Q Consensus 438 I~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aG 516 (2054)
-.+.+..+....+.++..|..+..+.+..+..+ ...+|..++..+ +-++......++..|.......++.+..+- ..
T Consensus 548 nalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L-~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~~~~lr~~l~-~q 625 (2710)
T PRK14707 548 KALSKWPDKQLCAVAASGLAERLADEPQLPKDL-HRQGVVIVLNALSKWPDTAVCAEAVNALAERLVDEPDLRKELD-PV 625 (2710)
T ss_pred HhhhcCCchhHHHHHHHHHHHHhhcchhhHHhh-hhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhccChhhhhhcc-HH
Confidence 556666667777777777776655444444444 234566666644 455554444444444333332233322221 22
Q ss_pred CCchHhhhh-hcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhh-ccCChhHHHHHHHHHHHH-HHhhc---
Q 000145 517 GIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL-KSGGPKGQDASAMALTKL-IRAAD--- 590 (2054)
Q Consensus 517 aIp~LV~LL-~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LL-kS~~~evq~~AA~AL~nL-s~~~e--- 590 (2054)
.+..++.-| +-++....+.++..|..-...+...+..+. ...|..+++-| |=.+.+....++..|..- .....
T Consensus 626 ~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fn-aQ~vAn~LNALSKWPe~e~Cr~Aa~~LA~rLa~~~~Lr~ 704 (2710)
T PRK14707 626 DVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFN-SLDVANALNALSKWPDTPVCAAAAGGMAERLAADPGLRK 704 (2710)
T ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcc-hHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhcChhhHh
Confidence 233333333 334444555555555433222233333332 33445555444 334555566666666532 22211
Q ss_pred ---hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCH-HHHHHHHHHHHHHh
Q 000145 591 ---SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNE-ENQEYAASVLADLF 665 (2054)
Q Consensus 591 ---~~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~-evre~Aa~ALanLa 665 (2054)
...+..++.-|+ =.+......+..+|+.-. ...+... ..+...+.-..|=.+.|=.+. .++..+...-..|.
T Consensus 705 al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA~rL--~~~p~l~-~a~~aQevANaLNALSKWPd~~~C~~AA~aLA~rLa 781 (2710)
T PRK14707 705 ELNPVDVANALNALSKWPRTPVCAAVASALAARV--VAEPRLR-KAFDAQQVATALNALSKWPDNQACAAAANTLAERQL 781 (2710)
T ss_pred hcCHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHH--hcChhhh-hhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHh
Confidence 111111222221 122222223333332211 1111111 112222222223333333333 44444433333444
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHH
Q 000145 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETA 744 (2054)
Q Consensus 666 s~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~A 744 (2054)
. ++..+..+--.++-..|-.+-+=.....-..|+.+|..-... .. ..+.. .+...|...++-|.. ++......|
T Consensus 782 ~-~~~Lr~aL~pQ~vAn~LNALSKWPe~~~Cr~AA~~LA~rLa~-dp--~Lr~a-f~AQ~VANaLNALSKWPd~~~Cr~A 856 (2710)
T PRK14707 782 R-EPDVRDVLKPREMTNALNALSKWPDTPACAAAASALAARVAD-DP--RLREA-FDVQHVATVLNAMSKWPDNAVCAAA 856 (2710)
T ss_pred h-CcchhhhcCHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHhc-Ch--hHHHh-cCHHHHHHHHHHhccCCCchHHHHH
Confidence 4 555555433222222222222222333344455555433321 11 33332 233344444444443 555666666
Q ss_pred HHHHHH-hhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 745 VAALAN-LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 745 l~AL~N-La~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
+.+|.- |..+++.+..+-.++....|-.+-+=.+...+..|+.+|..-..+
T Consensus 857 A~aLA~RLa~e~~LR~aL~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~ 908 (2710)
T PRK14707 857 AGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAASALAERLAD 908 (2710)
T ss_pred HHHHHHHHhcChhhhhccchHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhc
Confidence 666654 345777776664443333333343334556666677776665443
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.052 Score=71.47 Aligned_cols=435 Identities=16% Similarity=0.148 Sum_probs=233.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHh
Q 000145 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514 (2054)
Q Consensus 435 ~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~ 514 (2054)
+-++......+-+.++-.=..+.+-+...++.. .+.++.++.=+.++++.+|..|++.++.+... . +.
T Consensus 52 ~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~----i~- 119 (734)
T KOG1061|consen 52 PDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--K----IT- 119 (734)
T ss_pred HHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--H----HH-
Confidence 445566666666655555566777666544322 24567777777788888998888887666441 1 11
Q ss_pred hCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc----
Q 000145 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---- 590 (2054)
Q Consensus 515 aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---- 590 (2054)
.-...++.+.+++.++-+|..++-...++-.. ..+...+.|.++.|-+++.+.+|.+..+|..+|..+.....
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~---~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~ 196 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDI---DPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNL 196 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhhcC---ChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCc
Confidence 12567889999999999999999999988543 24556678999999999999999999999999999987642
Q ss_pred ----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000145 591 ----SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 591 ----~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas 666 (2054)
...+..++..+..-++--+..+..++..-. ..++.+. ...+..+...+.+.+..+...+..++.++..
T Consensus 197 ~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~-p~d~~ea-------~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~ 268 (734)
T KOG1061|consen 197 LELNPQLINKLLEALNECTEWGQIFILDCLAEYV-PKDSREA-------EDICERLTPRLQHANSAVVLSAVKVILQLVK 268 (734)
T ss_pred ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC-CCCchhH-------HHHHHHhhhhhccCCcceEeehHHHHHHHHH
Confidence 123344555555444444444444444321 1111111 1235666667777777777777777777765
Q ss_pred cChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHH
Q 000145 667 MRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVA 746 (2054)
Q Consensus 667 ~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~ 746 (2054)
.... .....-...-++++.++.... .++--|.+-+.-+....+. +.....-.-.++.. +...++.+=+.
T Consensus 269 ~~~~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-------~~~~~~~~Ff~kyn--DPiYvK~eKle 337 (734)
T KOG1061|consen 269 YLKQ-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-------ILKVEIKVFFCKYN--DPIYVKLEKLE 337 (734)
T ss_pred HHHH-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-------HHHhHhHeeeeecC--CchhhHHHHHH
Confidence 3222 333333455566666666555 5444444333333322221 11111111111111 22345555555
Q ss_pred HHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCc
Q 000145 747 ALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNG 826 (2054)
Q Consensus 747 AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~ 826 (2054)
++.-++.+....+ .+..+..+-.+.+.+.-+++++|+++++..-+ +. .+.+..|++++....+..
T Consensus 338 il~~la~~~nl~q------vl~El~eYatevD~~fvrkaIraig~~aik~e------~~---~~cv~~lLell~~~~~yv 402 (734)
T KOG1061|consen 338 ILIELANDANLAQ------VLAELKEYATEVDVDFVRKAVRAIGRLAIKAE------QS---NDCVSILLELLETKVDYV 402 (734)
T ss_pred HHHHHhhHhHHHH------HHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhh------hh---hhhHHHHHHHHhhcccce
Confidence 5555543222221 33445555555666666666666666665321 00 335555666655333222
Q ss_pred hhHHHHHHHHHHHhh--ccc-------CCC----------ccCCcccccc---cCCC---chHHHHHhhhcCChhHHHHH
Q 000145 827 TDVADALEVVALLAR--TKQ-------GLN----------FTYPPWAALA---EVPS---SIEPLVCCLAEGPPPLQDKA 881 (2054)
Q Consensus 827 ~~~~~AL~ALa~La~--~~~-------~~~----------~i~~~~~~~~---~~~~---~L~~Lv~ll~~~~~~vq~~A 881 (2054)
..++...+..+-+ ++. .+. +..-.|..+. ..+. -++.+++-..+++..+|-.=
T Consensus 403 --vqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~en~~dE~~~Vql~L 480 (734)
T KOG1061|consen 403 --VQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENALELLESFLENFKDETAEVQLEL 480 (734)
T ss_pred --eeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHHhhcccchHHHHHHH
Confidence 2233333333322 000 000 0001222222 1222 24444555556666666555
Q ss_pred HHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhh
Q 000145 882 IEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGG 926 (2054)
Q Consensus 882 i~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~ 926 (2054)
..+..+++...|. +++...-.-|..++-+++.+++|--|
T Consensus 481 Lta~ik~Fl~~p~------~tq~~l~~vL~~~~~d~~~~dlrDr~ 519 (734)
T KOG1061|consen 481 LTAAIKLFLKKPT------ETQELLQGVLPLATADTDNPDLRDRG 519 (734)
T ss_pred HHHHHHHHhcCCc------cHHHHHHHHHhhhhccccChhhhhhH
Confidence 5555555554442 22333345566666677777776554
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.13 Score=64.85 Aligned_cols=273 Identities=16% Similarity=0.126 Sum_probs=176.9
Q ss_pred HHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 476 Ip~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
.+.+..++-+++.++|..+.++++.+.. +.+.-..+.+.+.--.++.-|..+ ...-|++|...++.+.......+..
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence 3444444445558899999999999987 456666666666545555656543 5566889999888886532221111
Q ss_pred HHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000145 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2054)
Q Consensus 554 I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l 633 (2054)
..+.+.+++.+..+.+...+..|..+|..++-. + ++ .+
T Consensus 106 --~~~vvralvaiae~~~D~lr~~cletL~El~l~----------------~--------------------P~----lv 143 (371)
T PF14664_consen 106 --PRGVVRALVAIAEHEDDRLRRICLETLCELALL----------------N--------------------PE----LV 143 (371)
T ss_pred --CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh----------------C--------------------HH----HH
Confidence 345677777777777777777777777777533 1 11 13
Q ss_pred hcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC-------CH--HHHHHHHHHHH
Q 000145 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN-------TQ--MVATQSARALG 704 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg-------s~--~vr~~AA~AL~ 704 (2054)
...||+..|++.+-++..+..+..+.++.++.. +|..|..+...--+..++.-+.+- +. +.-..++.++.
T Consensus 144 ~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~ 222 (371)
T PF14664_consen 144 AECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAIS 222 (371)
T ss_pred HHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHH
Confidence 457889999998887777788899999999987 677777655433344444333221 22 23445677777
Q ss_pred HhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--Ch---------------H-H---------
Q 000145 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DP---------------D-I--------- 757 (2054)
Q Consensus 705 nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~~---------------e-~--------- 757 (2054)
.+.++-+. -..-..-+...++.|++.|..+++++++..+..+..+.. .| . .
T Consensus 223 ~~LrsW~G--Ll~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (371)
T PF14664_consen 223 TLLRSWPG--LLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSG 300 (371)
T ss_pred HHHhcCCc--eeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhccc
Confidence 77652222 010011122478889999999999999999999988811 00 0 0
Q ss_pred --------------H------------HHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhh
Q 000145 758 --------------A------------AEVLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLK 794 (2054)
Q Consensus 758 --------------r------------~~Iv~~g~I~~LV~LL~s~-~~evr~~Aa~AL~nL~~ 794 (2054)
+ ..+++.|.++.|+++..+. ++.+..+|...|+++..
T Consensus 301 ~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~ 364 (371)
T PF14664_consen 301 FAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELLH 364 (371)
T ss_pred ccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 0 1134677888888888777 78888888888877654
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0019 Score=63.64 Aligned_cols=86 Identities=30% Similarity=0.404 Sum_probs=70.8
Q ss_pred hHHHHHHh-ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchh
Q 000145 639 LRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNK 717 (2054)
Q Consensus 639 I~~LV~LL-ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r 717 (2054)
++.|++.+ +++++.+|..++.+|.++.. ..+++.|.++++++++.+|..|+++|+++..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----------PEAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 46788888 78899999999999996643 3568999999999999999999999998852
Q ss_pred HHHHhcCChhhHHhhhhcC-CHHHHHHHHHHHH
Q 000145 718 MSYIAEGDVKPLIKLAKTS-SIDAAETAVAALA 749 (2054)
Q Consensus 718 ~~I~~~gaV~~Lv~LL~s~-d~~Vre~Al~AL~ 749 (2054)
...++.|.+++.++ +..++..|+.+|+
T Consensus 61 -----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 -----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23788999988774 5567889998885
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0019 Score=63.68 Aligned_cols=86 Identities=26% Similarity=0.344 Sum_probs=71.4
Q ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHH
Q 000145 681 VNPCMRLL-TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAA 759 (2054)
Q Consensus 681 V~~Lv~LL-~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~ 759 (2054)
++.|++.+ ++.++.+|..++++|+++.. ..+++.|+.+++++++.++..|+.+|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--------------PEAIPALIELLKDEDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence 57889988 88899999999999996632 136899999999999999999999999873
Q ss_pred HHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHH
Q 000145 760 EVLLEDVVSALTRVLAEG-TSEGKKNASRALH 790 (2054)
Q Consensus 760 ~Iv~~g~I~~LV~LL~s~-~~evr~~Aa~AL~ 790 (2054)
.+..++.|.+++.++ +..+|..|+++|+
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 455889999988776 5667999998874
|
|
| >KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.28 Score=58.78 Aligned_cols=357 Identities=15% Similarity=0.148 Sum_probs=216.4
Q ss_pred hHHHHHHHHHHHhhcChh---hhHH--HhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHH--
Q 000145 406 LVQERVLEAMASLYGNIF---LSQW--VSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQL-- 478 (2054)
Q Consensus 406 ~Vq~~Aa~AL~~L~~n~~---~~~~--L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~-- 478 (2054)
.++.-++..++.+..+.+ +... +++.+..+.++..+..++.++-..|...+..++.. +..-..|.+.+....
T Consensus 97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlh 175 (524)
T KOG4413|consen 97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLH 175 (524)
T ss_pred hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHH
Confidence 488888888888865543 2222 34667889999999999999999999999999877 444455555554433
Q ss_pred HHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc-CCHHHHHHHHHHHHHHhcCChhHHHHHHHc
Q 000145 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESA 557 (2054)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s-~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~ 557 (2054)
+..+...-+.-+|......+..+.+-+++........|.+..|..-|+. .|.-++.++.+....|.. .+..++.+.+.
T Consensus 176 lrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLae-teHgreflaQe 254 (524)
T KOG4413|consen 176 LRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQE 254 (524)
T ss_pred HhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH-Hhhhhhhcchh
Confidence 3333333455567777777777777666666666677777777766665 477788888898888876 45668888889
Q ss_pred CChHHHHHhhc--cCChhHHHHHHHHHHHHHHhh------c-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000145 558 GAVPAFLWLLK--SGGPKGQDASAMALTKLIRAA------D-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2054)
Q Consensus 558 GaI~aLV~LLk--S~~~evq~~AA~AL~nLs~~~------e-------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~ 622 (2054)
|.|+.++.+.. +.+|--+..+....+.+.... + .-.+....++....+++....+..++|.+.+.
T Consensus 255 glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 255 GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 99999988775 355655555655555554331 1 11344556777888899899999999988766
Q ss_pred hcchHHHHhhhhcccchHHHHHHh-ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHH
Q 000145 623 ALQEDLVQKGSAANKGLRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSAR 701 (2054)
Q Consensus 623 ~~~~d~~~~~l~~~GaI~~LV~LL-ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~ 701 (2054)
....+...+. .....+.++.-. ......-++.+..+|.+++..-..-...+ .+|....+....
T Consensus 335 teGadlllkT--gppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqi-------------tDgkaeerlrcl- 398 (524)
T KOG4413|consen 335 TEGADLLLKT--GPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQI-------------TDGKAEERLRCL- 398 (524)
T ss_pred cchhHHHhcc--CChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhc-------------cccHHHHHHHHH-
Confidence 5555443322 111222333222 22233445667777777765211111111 122222121111
Q ss_pred HHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHH-hcCcHHHHHHHHcCC---
Q 000145 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVL-LEDVVSALTRVLAEG--- 777 (2054)
Q Consensus 702 AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv-~~g~I~~LV~LL~s~--- 777 (2054)
.....+.+.. ..-.......+..+.++++-.+..++..++..|=....|. +++.+.-.++--.+.
T Consensus 399 ifdaaaqstk-----------ldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKa 467 (524)
T KOG4413|consen 399 IFDAAAQSTK-----------LDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKA 467 (524)
T ss_pred HHHHHhhccC-----------CChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHH
Confidence 0111111111 1123335566777889999999999999987776666655 455554444322221
Q ss_pred CHHHHHHHHHHHHH
Q 000145 778 TSEGKKNASRALHQ 791 (2054)
Q Consensus 778 ~~evr~~Aa~AL~n 791 (2054)
..+.|...+.++++
T Consensus 468 akdAkYeccKAiae 481 (524)
T KOG4413|consen 468 AKDAKYECCKAIAE 481 (524)
T ss_pred HHHHHHHHHHHHHH
Confidence 23456666666665
|
|
| >KOG0567 consensus HEAT repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.071 Score=62.72 Aligned_cols=203 Identities=17% Similarity=0.124 Sum_probs=134.9
Q ss_pred cccchHHHHHHhccC--CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc
Q 000145 635 ANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 635 ~~GaI~~LV~LLks~--s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
...+++.|++.+... .+-+|-.|+.+|.++.. .+.++.+.++.++....+++-+..|+.++-+....
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 445677777777654 46677777777777763 45556666666666666776666666666441100
Q ss_pred cc-chhHHH--------HhcCChhhHHhhhhcCCHH-H-HHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHH
Q 000145 713 KT-TNKMSY--------IAEGDVKPLIKLAKTSSID-A-AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEG 781 (2054)
Q Consensus 713 ~d-~~r~~I--------~~~gaV~~Lv~LL~s~d~~-V-re~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~ev 781 (2054)
.. .+.... ...+-+..|-..|.+.+.. . |..|...|.|+.. +..|..|++-+..++...
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Salf 203 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALF 203 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHH
Confidence 00 000000 0112233344444443222 2 3357777776642 345777888888889999
Q ss_pred HHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCC
Q 000145 782 KKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPS 861 (2054)
Q Consensus 782 r~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~ 861 (2054)
|..++.++++|-+. .+++.|...|...+++.=.+.+|+.||+.++. +.
T Consensus 204 rhEvAfVfGQl~s~--------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~------------------e~ 251 (289)
T KOG0567|consen 204 RHEVAFVFGQLQSP--------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD------------------ED 251 (289)
T ss_pred HHHHHHHHhhccch--------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC------------------HH
Confidence 99999999998873 36788888888888887889999999999873 33
Q ss_pred chHHHHHhhhcCChhHHHHHHHHHHHhhc
Q 000145 862 SIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2054)
Q Consensus 862 ~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~ 890 (2054)
.++.|.....++.+.++.....+|.-+-.
T Consensus 252 ~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 252 CVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 68899999999999999998888876543
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.3 Score=68.24 Aligned_cols=423 Identities=15% Similarity=0.129 Sum_probs=213.1
Q ss_pred hhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhc--ChhhhH
Q 000145 349 GELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG--NIFLSQ 426 (2054)
Q Consensus 349 ~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~--n~~~~~ 426 (2054)
....-+++.....|..++-|.+.-.. . ...........+...+..++...+. .+|+-|.+.|+-+|+ +...++
T Consensus 824 ~~~~~s~nph~R~A~~VWLLs~vq~l-~---~~~~v~l~~~eI~~aF~~~Lsd~dE-f~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 824 DTLLTSPNPHERQAGCVWLLSLVQYL-G---QQPEVVLMLKEIQEAFSHLLSDNDE-FSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHh-c---cCchhhhccHHHHHHHHHHhcccHH-HHHHHHhcCceEEEecCCchhHH
Confidence 33344555555556666666554222 1 0111222333454666777777654 499999999988864 445544
Q ss_pred HHhhcchHHHHHHHhccCCHH-------H---------------HHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc
Q 000145 427 WVSHAEAKKVLIGLITMATAD-------V---------------REYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484 (2054)
Q Consensus 427 ~L~~~g~I~~LI~LL~ssd~e-------v---------------q~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~ 484 (2054)
.++ ..|+.-+..+... . ....-.-|++++.+ +.+..-|-.++++.+
T Consensus 899 ~LV-----~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd-------l~qPdLVYKFM~LAn 966 (1702)
T KOG0915|consen 899 SLV-----DSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD-------LGQPDLVYKFMQLAN 966 (1702)
T ss_pred HHH-----HHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh-------cCChHHHHHHHHHhh
Confidence 443 3333333221100 0 00111122233222 111112223333333
Q ss_pred CC-ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHH
Q 000145 485 LS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2054)
Q Consensus 485 s~-d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aL 563 (2054)
+. .=.-|..|+..+..++.... .+....-..-||.|.+.=-++++.+|..-..+...|..++...-+... ....+-|
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~-~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~-neIl~eL 1044 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAG-EKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYL-NEILDEL 1044 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHH-HhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHH-HHHHHHH
Confidence 22 11246677888888876431 122222234677777777788999999888888888776433222111 4556667
Q ss_pred HHhhccCChhHHHHHHHHHHHHHHhhch--------hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc
Q 000145 564 LWLLKSGGPKGQDASAMALTKLIRAADS--------ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA 635 (2054)
Q Consensus 564 V~LLkS~~~evq~~AA~AL~nLs~~~e~--------~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~ 635 (2054)
+.-+.+...++|+.++-||..|-+..+. +.+..+.+.+.+-++.|++.+..+...++...-..-........
T Consensus 1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~ 1124 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKG 1124 (1702)
T ss_pred HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccH
Confidence 7777788889999999999999887431 22333444444555666666555555444321000000111111
Q ss_pred ccchHHHHHHhc-----cCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH-HHHHHHHhhCC
Q 000145 636 NKGLRSLVQVLN-----SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ-SARALGALSRP 709 (2054)
Q Consensus 636 ~GaI~~LV~LLk-----s~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~-AA~AL~nLs~s 709 (2054)
..++..+...+- +.-+++|..+...+..|+...+... .---...++.|++....-.+.+-.. ++++ .|.-.
T Consensus 1125 ~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~l-kP~~~~LIp~ll~~~s~lE~~vLnYls~r~-~~~e~- 1201 (1702)
T KOG0915|consen 1125 KEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKEL-KPHFPKLIPLLLNAYSELEPQVLNYLSLRL-INIET- 1201 (1702)
T ss_pred HHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhh-cchhhHHHHHHHHHccccchHHHHHHHHhh-hhhHH-
Confidence 223444444332 3458999999999999987433311 1112345666666666544443322 2222 22111
Q ss_pred CCcccchhHHHHh--------------------cCChhhHHhhhhcC-CHHHHHHHHHHHHHhhCChHHHHHHH--hcCc
Q 000145 710 TKTKTTNKMSYIA--------------------EGDVKPLIKLAKTS-SIDAAETAVAALANLLSDPDIAAEVL--LEDV 766 (2054)
Q Consensus 710 ~~~~d~~r~~I~~--------------------~gaV~~Lv~LL~s~-d~~Vre~Al~AL~NLa~~~e~r~~Iv--~~g~ 766 (2054)
...|..|..+.. .+.+|.++++++.+ .-..+..++..++-|+.. .-.++. ..+.
T Consensus 1202 -ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r--~~~emtP~sgKl 1278 (1702)
T KOG0915|consen 1202 -EALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR--LGSEMTPYSGKL 1278 (1702)
T ss_pred -HHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH--hccccCcchhHH
Confidence 001122221111 12444455554442 122233344444444320 000000 1123
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 767 VSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 767 I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+..+...+.+.++.+++.-+.+++.|..-+
T Consensus 1279 l~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1279 LRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 556666677889999999999999998754
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.028 Score=72.14 Aligned_cols=225 Identities=15% Similarity=0.164 Sum_probs=139.8
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhh--cchHHHHhhhhccc
Q 000145 562 AFLWLLKSGGPKGQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKAHVIKVLGHVLTMA--LQEDLVQKGSAANK 637 (2054)
Q Consensus 562 aLV~LLkS~~~evq~~AA~AL~nLs~~~e--~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~--~~~d~~~~~l~~~G 637 (2054)
.|..+..+.++.++..|+.+|..|+..-+ .......++++++++..|+..+.+.+......- +.+....+.-....
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~ 281 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDA 281 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHH
Confidence 36666677788888888888877765422 224566788888888888887777666655432 11111111112234
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH-Hh--hCC-----
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG-AL--SRP----- 709 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~-nL--s~s----- 709 (2054)
+...+.+.+++.+..+|-.|+.+|..+...+.+......+...+. -++. ..........+. +- +++
T Consensus 282 aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms----~lRR--kr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 282 AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS----RLRR--KRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred HHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh----hhhh--hhhcccchHHHHhcCCcccCccccc
Confidence 677888888888889999999988888664444443333322222 1111 111111111221 11 110
Q ss_pred -C--CcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHH
Q 000145 710 -T--KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNA 785 (2054)
Q Consensus 710 -~--~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~A 785 (2054)
. .+.|.....++..|+-..++.-|.++=-+||.+|+..++.|+. .|.... ..+..|++++.++...+|..|
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHH
Confidence 0 0123344567888888888888888878888888888888876 455433 356678888888888888888
Q ss_pred HHHHHHhhhcCC
Q 000145 786 SRALHQLLKHFP 797 (2054)
Q Consensus 786 a~AL~nL~~~~~ 797 (2054)
+.+|..+..+-.
T Consensus 431 i~aL~~Is~~l~ 442 (823)
T KOG2259|consen 431 IFALTMISVHLA 442 (823)
T ss_pred HHHHHHHHHHhe
Confidence 888888887643
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0035 Score=53.68 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=38.2
Q ss_pred ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 000145 754 DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 754 ~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~ 794 (2054)
+++.+..+++.|++|+|+++|.+.++++++.|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.27 Score=59.01 Aligned_cols=198 Identities=18% Similarity=0.184 Sum_probs=123.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHh-cCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHH
Q 000145 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLL-GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2054)
Q Consensus 86 Vp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~-~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~r 164 (2054)
...++.+|.+.+|.++..|...+..++.. ..+.-... ...++.+.+++.+.++ .+.|+.+|.|++. +...+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-----~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-----KEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-----hHHHH
Confidence 35688999999999999999999888765 22222222 2568889999988655 6788999999996 45557
Q ss_pred HHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHh-----hCChHHHHhhhccCCH---HHHHHH
Q 000145 165 KIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLE-----AGGVDIIVGLLSSDNA---AAQSNA 236 (2054)
Q Consensus 165 e~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~e-----aGGI~~LV~LL~s~s~---evq~~A 236 (2054)
+.+.+. .+..++..+..+. ..+....+..|.|+++.++.....+.. ..|+..++....+.+- .--.+.
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~---~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~yl 152 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQ---SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYL 152 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcc---cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHH
Confidence 777766 7777888776553 346778889999999987654332221 1344444444333221 233455
Q ss_pred HHHHHHHHhhcCCCcchhcccc-hHHHHHHHhccCCChhHH-HHHHHHHHHHhhccHHHHHHHH
Q 000145 237 ASLLARLMLAFGDSIPTVIDSG-AVKALVQLVGQNNDISVR-ASAADALEALSSKSIKAKKAVV 298 (2054)
Q Consensus 237 ~~aL~nLs~~~~~~r~~i~~sG-aL~~LL~LL~s~~d~~Vr-~~Aa~aL~nLs~~s~e~Rk~I~ 298 (2054)
+.++.+|+ ..+..|..+.+.. ....-+..+.+ .+..+| ...+++|+|++++ ......+.
T Consensus 153 A~vf~nls-~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd-~~~h~~lL 213 (353)
T KOG2973|consen 153 APVFANLS-QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFD-AKLHEVLL 213 (353)
T ss_pred HHHHHHHh-hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhcc-chhHHHHh
Confidence 66777777 3344445444443 22222333333 344444 3566788888886 44444444
|
|
| >KOG2973 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.15 Score=61.21 Aligned_cols=285 Identities=17% Similarity=0.127 Sum_probs=160.5
Q ss_pred HHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 000145 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVES 556 (2054)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e 556 (2054)
..++.++.+.++.+|..|+..+..++.. +.....-.+...++.+.++++..++ -+.|+.+|.|++.+ +..++.+.+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll~ 81 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLLQ 81 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHHH
Confidence 3578899999999999999999888774 1111111123456667788877766 67889999999984 556665555
Q ss_pred cCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchh----------hHHHHHHHhc---CCCcc---hHHHHHHHHHHHH
Q 000145 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSA----------TINQLLALLL---GDSPS---SKAHVIKVLGHVL 620 (2054)
Q Consensus 557 ~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~----------~Ip~Lv~LL~---~~~~~---V~~~a~~AL~~La 620 (2054)
. .+..+++.+.+.....-...+..|.|+++.++.- .-..++++.. +.+.. -..+.+-.+.+++
T Consensus 82 ~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls 160 (353)
T KOG2973|consen 82 D-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLS 160 (353)
T ss_pred H-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHh
Confidence 5 7777788888877777888899999998774200 0012222222 11111 1122333333333
Q ss_pred hhhcchHHHHhhhhccc--chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000145 621 TMALQEDLVQKGSAANK--GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2054)
Q Consensus 621 ~~~~~~d~~~~~l~~~G--aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~ 698 (2054)
.. +.-+..+.+.. ..+.+..+-..++.--|...++.|.|.|. +......+.. ..+.-|..+|
T Consensus 161 ~~----~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cF-d~~~h~~lL~-e~~~lLp~iL---------- 224 (353)
T KOG2973|consen 161 QF----EAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCF-DAKLHEVLLD-ESINLLPAIL---------- 224 (353)
T ss_pred hh----hhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhc-cchhHHHHhc-chHHHHHHHH----------
Confidence 22 22222222222 23344444442333445677888999887 5555555544 2222222222
Q ss_pred HHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhh-----cCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHH
Q 000145 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-----TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRV 773 (2054)
Q Consensus 699 AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~-----s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~L 773 (2054)
.-++.. .+.++.. -.-++.=+++|. .++++++..-+.+|.-|+.....|+.+...| +.++++-
T Consensus 225 -----lPlagp-ee~sEEd-----m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kg-vYpilRE 292 (353)
T KOG2973|consen 225 -----LPLAGP-EELSEED-----MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKG-VYPILRE 292 (353)
T ss_pred -----hhcCCc-cccCHHH-----HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcC-chHHHHH
Confidence 222220 0000111 112222225554 3689999999999999988777787776655 4555554
Q ss_pred HcC--CCHHHHHHHHHHHHHhhh
Q 000145 774 LAE--GTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 774 L~s--~~~evr~~Aa~AL~nL~~ 794 (2054)
++. .++++++++-....-|..
T Consensus 293 lhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 293 LHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHh
Confidence 443 356666544444433443
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.53 Score=58.78 Aligned_cols=250 Identities=14% Similarity=0.148 Sum_probs=173.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccC------ch----hHHHHHhcCCh
Q 000145 58 RELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD------ED----LRLKVLLGGCI 127 (2054)
Q Consensus 58 re~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~------ee----~r~~v~~~GaI 127 (2054)
-......+..++..++-.-.++. .++|+.|+.+|.+++.++-......|..+... .+ ....++..+.+
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lve--ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vl 178 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVE--LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVL 178 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHH--hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHH
Confidence 45566777777777766655553 58999999999999999999999999988643 12 22344556888
Q ss_pred HHHHHhhccC------CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHH
Q 000145 128 PPLLSLLKSE------STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNL 201 (2054)
Q Consensus 128 p~LV~LL~se------d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL 201 (2054)
+.|++-+..= +.+....+...+.|+... .+...+.+++.|.+.-|+.-+......+ .....+..+|.-+
T Consensus 179 aLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~----r~~~~~~~~e~~ll~WLL~rl~~k~~f~-aNk~YasEiLail 253 (536)
T KOG2734|consen 179 ALLVQNVERLDESVKEEADGVHNTLAVVENLVEV----RPAICTEIVEQGLLSWLLKRLKGKAAFD-ANKQYASEILAIL 253 (536)
T ss_pred HHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhc----cHHHHHHHHHhhHHHHHHHHHhcccCcc-hhHHHHHHHHHHH
Confidence 8888888662 333455666777787753 4556778888888888777665543222 4566888999988
Q ss_pred hcCCCchhHHHHhhCChHHHHhhhcc---CC---HHHHHHHHHHHHHHHh--hcCCCcchhcccchHHHHHHHhccCCCh
Q 000145 202 CGDKDGYWRATLEAGGVDIIVGLLSS---DN---AAAQSNAASLLARLML--AFGDSIPTVIDSGAVKALVQLVGQNNDI 273 (2054)
Q Consensus 202 ~~~~e~r~~aI~eaGGI~~LV~LL~s---~s---~evq~~A~~aL~nLs~--~~~~~r~~i~~sGaL~~LL~LL~s~~d~ 273 (2054)
..+...+...+-.-.|+..+++-+.- .+ .+-++..-.++.+||. ..+.++..+....++.-..-+++. ..
T Consensus 254 lq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~--Kk 331 (536)
T KOG2734|consen 254 LQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE--KK 331 (536)
T ss_pred hccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH--HH
Confidence 88877666777788899999887753 12 3345555566666663 566677777776666665555552 23
Q ss_pred hHHHHHHHHHHHHhhccH--HHHHHHHhcCCHHHHHHhhc-CCchh
Q 000145 274 SVRASAADALEALSSKSI--KAKKAVVAADGVPVLIGAIV-APSKE 316 (2054)
Q Consensus 274 ~Vr~~Aa~aL~nLs~~s~--e~Rk~I~eaggL~~LIeLL~-s~s~e 316 (2054)
..+..+..+|-....+.+ .++..+.+..|+.++..+.- .|++.
T Consensus 332 ~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~ 377 (536)
T KOG2734|consen 332 VSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKR 377 (536)
T ss_pred HhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccch
Confidence 456677888888777544 78888999999999976543 44433
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.018 Score=67.30 Aligned_cols=185 Identities=18% Similarity=0.100 Sum_probs=112.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhhc--HHHHHHHhh-hcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcC
Q 000145 49 HANMSSPQERELITMRILTIAKAK--KEARLLIGS-HAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGG 125 (2054)
Q Consensus 49 ~~ssss~~ere~AL~~L~~La~~~--d~ar~~I~~-~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~G 125 (2054)
+.++.+.++|..++..|..+.... ......+.+ -...++.+...+.+....+...|+.++..++..-...-.-....
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 566778899999999999998877 222232222 01234566666666677888899999988865433322222335
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCc-HHHHHHhhCCCCCCChhHHHHHHHHHHHHhcC
Q 000145 126 CIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGV-VPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204 (2054)
Q Consensus 126 aIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~-Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~ 204 (2054)
.+|.|++.+.+....+++.|..+|..+..+.. . .. .. ++.+.....+++ +.++..++..+..+...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----~-~~-----~~~~~~l~~~~~~Kn---~~vR~~~~~~l~~~l~~ 161 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS----Y-SP-----KILLEILSQGLKSKN---PQVREECAEWLAIILEK 161 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--------HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----c-HH-----HHHHHHHHHHHhCCC---HHHHHHHHHHHHHHHHH
Confidence 78999999999888999999999999997421 0 01 12 455555565554 66888888888888776
Q ss_pred CCchhHHHHh----hCChHHHHhhhccCCHHHHHHHHHHHHHHHhh
Q 000145 205 KDGYWRATLE----AGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246 (2054)
Q Consensus 205 ~e~r~~aI~e----aGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~ 246 (2054)
.......+.. ...++.+...+.+.++++|..|-.+++.+...
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 5411111111 22567788888999999999999999888743
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0052 Score=52.58 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=38.1
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 668 ~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+++++..+++.|++++|+++|+++++.+++.|+++|+||++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.095 Score=70.25 Aligned_cols=239 Identities=17% Similarity=0.202 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhhcChhhhHHHhh----cchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhh
Q 000145 408 QERVLEAMASLYGNIFLSQWVSH----AEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2054)
Q Consensus 408 q~~Aa~AL~~L~~n~~~~~~L~~----~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL 483 (2054)
|.+=.++|.-|.+--+...|.+. -|..++.++||+++-.+.+...+..|.++-.-++..+..+++.+|-..+++.+
T Consensus 484 QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL 563 (1387)
T KOG1517|consen 484 QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVL 563 (1387)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEe
Confidence 44555666666555555555433 37789999999999999999999999887665577777888888888888887
Q ss_pred cC-C--ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcCC
Q 000145 484 GL-S--SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGA 559 (2054)
Q Consensus 484 ~s-~--d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa~~sd~~r~~I~e~Ga 559 (2054)
.. + +++.|..|+..|..++..-........+.+.+..=+..|+++ .+-.|.|.+-+|+.|=.+.++.|-.=.+.++
T Consensus 564 ~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~A 643 (1387)
T KOG1517|consen 564 DPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNA 643 (1387)
T ss_pred cCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccH
Confidence 76 2 347888899999999985444455555555555555667775 6889999999999998887777776677899
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHHHhhc------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000145 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAAD------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2054)
Q Consensus 560 I~aLV~LLkS~~~evq~~AA~AL~nLs~~~e------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l 633 (2054)
.+.|..++++.-|++|..|..||+.+..... ...+...+.+ ++..+ ..++...
T Consensus 644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l---~~~~~---------------~~E~~i~--- 702 (1387)
T KOG1517|consen 644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDL---DDERT---------------SIEDLII--- 702 (1387)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcc---hhhhh---------------hHHHHHH---
Confidence 9999999999999999999999998865411 0011111110 00000 0000000
Q ss_pred hcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChh
Q 000145 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e 670 (2054)
.+.-.++.+++.+++-+|...+-+|..+..++..
T Consensus 703 ---~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 703 ---KGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred ---hhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHH
Confidence 1124677778888888888888888888765433
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.25 E-value=3.5 Score=54.34 Aligned_cols=228 Identities=14% Similarity=0.083 Sum_probs=127.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCCh
Q 000145 48 LHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCI 127 (2054)
Q Consensus 48 L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaI 127 (2054)
|.++++..-.|+.|.-+|..+-+..++... ..+=...++.+|.+.+-.+...+...+-.+++....-.+....-++
T Consensus 155 LvS~~~~~~vkqkaALclL~L~r~spDl~~----~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~av 230 (938)
T KOG1077|consen 155 LVSGSSMDYVKQKAALCLLRLFRKSPDLVN----PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAV 230 (938)
T ss_pred HhCCcchHHHHHHHHHHHHHHHhcCccccC----hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHH
Confidence 344455555667777777777666543311 1234667788887777666666777776666543332232222233
Q ss_pred HHHHHhhcc-------------CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHH
Q 000145 128 PPLLSLLKS-------------ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFV 194 (2054)
Q Consensus 128 p~LV~LL~s-------------ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~A 194 (2054)
..|.++... +.|..+...++.|.+.=. ..+...+..+.+ +...++...+...+....-..+|
T Consensus 231 s~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~---~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na 305 (938)
T KOG1077|consen 231 SRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT---PEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNA 305 (938)
T ss_pred HHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC---CCCchHHHHHHH--HHHHHHhccccCccccchHhhhh
Confidence 333333221 246677777777776632 223334444433 33444443332211111111111
Q ss_pred ----HHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccC
Q 000145 195 ----TGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270 (2054)
Q Consensus 195 ----l~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~ 270 (2054)
+--..++..+-+.....+.+ ++..|.++|.+...++|--+...++.|+.. +.....+... .+.++..|+..
T Consensus 306 ~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkte 380 (938)
T KOG1077|consen 306 KNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTE 380 (938)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccc
Confidence 22223444443333333333 677788888888888888888888888843 2223333222 67788888878
Q ss_pred CChhHHHHHHHHHHHHhhc
Q 000145 271 NDISVRASAADALEALSSK 289 (2054)
Q Consensus 271 ~d~~Vr~~Aa~aL~nLs~~ 289 (2054)
.|.++|..+.+.|..++-.
T Consensus 381 rDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 381 RDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred cchHHHHHHHHHHHHHhch
Confidence 8999999999999988874
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=4.6 Score=53.29 Aligned_cols=99 Identities=12% Similarity=0.158 Sum_probs=69.2
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc-CCHHHHHHHHHHHHHHhhcChhhhhhh
Q 000145 597 LLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSL 675 (2054)
Q Consensus 597 Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks-~s~evre~Aa~ALanLas~~~e~r~~I 675 (2054)
|-+++.+...+++..+.+.+..|+......|.++.- .+.++..|+. .|-.+|..|+..|..+|. .++...
T Consensus 334 Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h------~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak~- 404 (938)
T KOG1077|consen 334 LGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH------QDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQ- 404 (938)
T ss_pred HHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH------HHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHHH-
Confidence 334455555667777777777777665555554432 7788889984 588999999999999985 455544
Q ss_pred hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 676 ATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 676 v~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
++..|++.|.+.+..+|+.-+.-.+-|+.
T Consensus 405 ----IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 405 ----IVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred ----HHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 35678888888888888776655555543
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.21 E-value=7.9 Score=51.95 Aligned_cols=455 Identities=13% Similarity=0.097 Sum_probs=234.7
Q ss_pred HHHHHHHHHhhcChhhhHHHhhcc---hHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcC
Q 000145 409 ERVLEAMASLYGNIFLSQWVSHAE---AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2054)
Q Consensus 409 ~~Aa~AL~~L~~n~~~~~~L~~~g---~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s 485 (2054)
..+...|.++..--.-++.+.+.+ ..-.+.+++++.+...++..=.++..++.-..+.- -+...+..-...
T Consensus 38 r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~isedvi------ivtsslmkD~t~ 111 (865)
T KOG1078|consen 38 RKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKISEDVI------IVTSSLMKDMTG 111 (865)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccchhhh------hhhHHHHhhccC
Confidence 455556666532211122233332 33446677888887777766667777766533221 123344444445
Q ss_pred CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc----CCHHHHHHH-HHHHHHHhcCChhHHHHHHHcCCh
Q 000145 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA----GSQKAREVA-AHVLWILCCHSEDIRACVESAGAV 560 (2054)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s----~s~~Vre~A-A~aL~nLa~~sd~~r~~I~e~GaI 560 (2054)
.++.+|-.|++.|+.+.... -+...-+.++. ..+.+...| +..+..|....+..++.. .+..
T Consensus 112 ~~d~yr~~AiR~L~~I~d~~-----------m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~--neiq 178 (865)
T KOG1078|consen 112 KEDLYRAAAIRALCSIIDGT-----------MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWA--NEVQ 178 (865)
T ss_pred CCcchhHHHHHHHHhhcCcc-----------hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHH--Hhhh
Confidence 56678888888888887631 12222222222 222222222 233444443333333322 1111
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHH--HHHHhhhcchHHHHhhhhcccc
Q 000145 561 PAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVL--GHVLTMALQEDLVQKGSAANKG 638 (2054)
Q Consensus 561 ~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL--~~La~~~~~~d~~~~~l~~~Ga 638 (2054)
+ -..+.+..+|+++...|..+-.++. -++..++..+..+. ++...+.|+ +..+...... .......
T Consensus 179 e----a~~s~~~m~QyHalglLyqirk~dr-la~sklv~~~~~~~--~~~~~A~~~lir~~~~~l~~~-----~~~~s~~ 246 (865)
T KOG1078|consen 179 E----AVNSDNIMVQYHALGLLYQIRKNDR-LAVSKLVQKFTRGS--LKSPLAVCMLIRIASELLKEN-----QQADSPL 246 (865)
T ss_pred h----ccCcHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHcccc--ccchhHHHHHHHHHHHHhhhc-----ccchhhH
Confidence 1 1223344678888888887754422 23333333332211 111111111 1111111110 0011122
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc------
Q 000145 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT------ 712 (2054)
Q Consensus 639 I~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~------ 712 (2054)
.+-+-..+++..+.+...|++++.++...+... + ...+..|-.++.+.....|-.|.+.|..++...|+
T Consensus 247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~---l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN 321 (865)
T KOG1078|consen 247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE---L--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN 321 (865)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccCHhh---c--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence 344445666677888888888888875432211 1 11667777777777778888888888888764444
Q ss_pred -------ccchhHHHHhcCChhhHHhhhhcCCHHHHHH----HHHHHHHhhCCh------HHHH-----HHHhcCcHHHH
Q 000145 713 -------KTTNKMSYIAEGDVKPLIKLAKTSSIDAAET----AVAALANLLSDP------DIAA-----EVLLEDVVSAL 770 (2054)
Q Consensus 713 -------~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~----Al~AL~NLa~~~------e~r~-----~Iv~~g~I~~L 770 (2054)
.|.+|. =....+-.+|+.+...-... .....++++.+- ..+. .....+.+..|
T Consensus 322 ~elE~lItd~Nrs-----Iat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL 396 (865)
T KOG1078|consen 322 LDLESLITDSNRS-----IATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFL 396 (865)
T ss_pred hhHHhhhcccccc-----hhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHH
Confidence 111221 01122233344333222221 222222221100 0000 01122345566
Q ss_pred HHHHcC-CCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCcc
Q 000145 771 TRVLAE-GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFT 849 (2054)
Q Consensus 771 V~LL~s-~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i 849 (2054)
-++|++ |.-+-++..+.++..+....|-. ...+...|+....+-+. ...+.+.|..|..... +.
T Consensus 397 ~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--------Ke~~L~~LCefIEDce~----~~i~~rILhlLG~EgP---~a 461 (865)
T KOG1078|consen 397 SNMLREEGGFEFKRAIVDAIIDIIEENPDS--------KERGLEHLCEFIEDCEF----TQIAVRILHLLGKEGP---KA 461 (865)
T ss_pred HHHHHhccCchHHHHHHHHHHHHHHhCcch--------hhHHHHHHHHHHHhccc----hHHHHHHHHHHhccCC---CC
Confidence 666554 45677888888888877744321 13456667777754332 4467777777775321 11
Q ss_pred CCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhhhHH
Q 000145 850 YPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAAL 929 (2054)
Q Consensus 850 ~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~ 929 (2054)
. +....+..+-....-.+..+|.+|+.+|.++....+. -...|-.+++|.++...+|||--+|..
T Consensus 462 ~-------~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~--------l~~sI~vllkRc~~D~DdevRdrAtf~ 526 (865)
T KOG1078|consen 462 P-------NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVV--------LLPSILVLLKRCLNDSDDEVRDRATFY 526 (865)
T ss_pred C-------CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCC--------ccccHHHHHHHHhcCchHHHHHHHHHH
Confidence 1 1123355666667778888999999999998744332 225688999999999999999999988
Q ss_pred HHHhc
Q 000145 930 LICAA 934 (2054)
Q Consensus 930 ~i~~~ 934 (2054)
+-.+.
T Consensus 527 l~~l~ 531 (865)
T KOG1078|consen 527 LKNLE 531 (865)
T ss_pred HHHhh
Confidence 86443
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.55 Score=59.36 Aligned_cols=236 Identities=18% Similarity=0.187 Sum_probs=158.8
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCCCcccch
Q 000145 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--TQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 639 I~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg--s~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
.+.+..++-+++.++|..+.+++.++.. +++....+.+.++---++.-|..+ ++.=|++|.+-++.+..... +
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~---~- 101 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK---G- 101 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC---C-
Confidence 4444444555569999999999999988 777778888877666666666433 44456788888877765211 1
Q ss_pred hHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
....-.++++.++.+..+.++..+..|+.+|+-++- +|+ -+...||+..|.+.+.++..++.+..+.++..+..+
T Consensus 102 -~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~ 177 (371)
T PF14664_consen 102 -PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS 177 (371)
T ss_pred -cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC
Confidence 112346789999999999999999999999999986 666 456789999999999888777999999999999986
Q ss_pred CCCchhHhhhhhhhhhHHHHHHhhccC-----CCCc--hhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHH
Q 000145 796 FPVGDVLKGNAQCRFVVLTLVDSLNAM-----DMNG--TDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVC 868 (2054)
Q Consensus 796 ~~~~e~i~~~i~~~g~v~~LV~LL~sg-----~~~~--~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ 868 (2054)
... +..+.....+..++.-+.+. +.+. .....+..++..+-++=+|. .+.. ...-..+..|+.
T Consensus 178 p~t----R~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL-----l~l~-~~~~~~lksLv~ 247 (371)
T PF14664_consen 178 PRT----RKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL-----LYLS-MNDFRGLKSLVD 247 (371)
T ss_pred cch----hhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce-----eeee-cCCchHHHHHHH
Confidence 432 22222222233333333322 1111 12333334444433321110 0111 112257999999
Q ss_pred hhhcCChhHHHHHHHHHHHhhccCC
Q 000145 869 CLAEGPPPLQDKAIEILSRLCGDQP 893 (2054)
Q Consensus 869 ll~~~~~~vq~~Ai~iL~~L~~~~~ 893 (2054)
++..+++.+|..-++++..++.-.+
T Consensus 248 ~L~~p~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 248 SLRLPNPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999998664
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.7 Score=60.80 Aligned_cols=309 Identities=16% Similarity=0.167 Sum_probs=181.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHh--hhcCCChhhhHHHHHHHHHHhhhccchhhH
Q 000145 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS--LLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2054)
Q Consensus 434 I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~--LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~ 511 (2054)
++.+...+.+....++++|.-++..+-.... ..+. . .|.|+. +....++..+++|-..|...-. + |
T Consensus 136 ~p~IracleHrhsYVRrNAilaifsIyk~~~---~L~p--D-apeLi~~fL~~e~DpsCkRNAFi~L~~~D~---E-r-- 203 (948)
T KOG1058|consen 136 MPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HLIP--D-APELIESFLLTEQDPSCKRNAFLMLFTTDP---E-R-- 203 (948)
T ss_pred HHHHHHHHhCcchhhhhhhheeehhHHhhhh---hhcC--C-hHHHHHHHHHhccCchhHHHHHHHHHhcCH---H-H--
Confidence 4455556677778899999877766544311 1121 1 233333 4456678888888777655432 1 1
Q ss_pred HHhhCCCchHhhhh---hcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 000145 512 ITAAGGIPPLVQLL---EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 512 I~~aGaIp~LV~LL---~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
++.-|.... .+-++..+-...+.++.-+..++.- +..-+..+..+|.+.++.+++.++.+|.+++.+
T Consensus 204 -----Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~-----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~ 273 (948)
T KOG1058|consen 204 -----ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE-----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND 273 (948)
T ss_pred -----HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH-----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCC
Confidence 111111111 1113455556666666666544432 234577888999999999999999999999877
Q ss_pred hc--hhhHHHHHHHhcC-CCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHh
Q 000145 589 AD--SATINQLLALLLG-DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLF 665 (2054)
Q Consensus 589 ~e--~~~Ip~Lv~LL~~-~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLa 665 (2054)
+. ..+...+++++.. .+.+++.-...-|..+. ..+... -.|.+-.++.++.+++-++|..+......|.
T Consensus 274 p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~i------l~~l~mDvLrvLss~dldvr~Ktldi~ldLv 345 (948)
T KOG1058|consen 274 PTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKI------LQGLIMDVLRVLSSPDLDVRSKTLDIALDLV 345 (948)
T ss_pred HHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHH------HHHHHHHHHHHcCcccccHHHHHHHHHHhhh
Confidence 54 2234556666543 33334433333333222 111111 1234566677888899999999999888887
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhc-----------cCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhh
Q 000145 666 SMRQDICGSLATDEIVNPCMRLLT-----------SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK 734 (2054)
Q Consensus 666 s~~~e~r~~Iv~~g~V~~Lv~LL~-----------dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~ 734 (2054)
+. .-+..++.+|+ +.+..-|..-.++++..+..+++ ..+.+|+.|++.+.
T Consensus 346 ss-----------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--------~aatvV~~ll~fis 406 (948)
T KOG1058|consen 346 SS-----------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--------VAATVVSLLLDFIS 406 (948)
T ss_pred hh-----------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--------HHHHHHHHHHHHhc
Confidence 62 12233333332 12234466677888888775555 33458899999998
Q ss_pred cCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHc-CCCHHHHHHHHHHHHHhhhcC
Q 000145 735 TSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLA-EGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 735 s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~-s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+.++......+..+..... .|..|..|+ ..|+.-+. -.+.++.+.|.|.++..|...
T Consensus 407 D~N~~aas~vl~FvrE~iek~p~Lr~~ii-----~~l~~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 407 DSNEAAASDVLMFVREAIEKFPNLRASII-----EKLLETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred cCCHHHHHHHHHHHHHHHHhCchHHHHHH-----HHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence 8776554444333333222 455555443 34443332 246788899999999988754
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.08 Score=61.92 Aligned_cols=184 Identities=18% Similarity=0.165 Sum_probs=111.9
Q ss_pred CCChhhhHHHHHHHHHHhhhc--cchhhHHHhh--CCCchHhhhhhcCCHHHHHHHHHHHHHHhcCCh-hHHHHHHHcCC
Q 000145 485 LSSEQHQEYAVQLIAILTEQV--DDSKWAITAA--GGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE-DIRACVESAGA 559 (2054)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLs~~s--~e~r~~I~~a--GaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd-~~r~~I~e~Ga 559 (2054)
+.+=+.|..++.-|..+..++ .+....+... ..+..+...+.+....+...|+.++..++..-. ..... -...
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--ADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HHHH
Confidence 445567888888888888755 2222222221 345566666776677788889988888865311 12222 1446
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHHHhhc--hhh-HHHHHHHhcCCCcchHHHHHHHHHHHHhhhc-chHHHHhhhhc
Q 000145 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAAD--SAT-INQLLALLLGDSPSSKAHVIKVLGHVLTMAL-QEDLVQKGSAA 635 (2054)
Q Consensus 560 I~aLV~LLkS~~~evq~~AA~AL~nLs~~~e--~~~-Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~-~~d~~~~~l~~ 635 (2054)
+|.|+..+.++...++..+..+|..+..... ... .+.+.....+.++.++..+...+..+....+ ..........-
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~ 175 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFL 175 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchH
Confidence 8899999999999999999999999987754 445 6777778889999999999988888765433 11111110001
Q ss_pred ccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChh
Q 000145 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 636 ~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e 670 (2054)
...++.+...+.+.++++|+.|-.++..+....++
T Consensus 176 ~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 176 KQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 23577888899999999999999999999764333
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.3 Score=57.46 Aligned_cols=235 Identities=14% Similarity=0.050 Sum_probs=149.8
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhcc-CchhHHHHHhc
Q 000145 51 NMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG-----TPLAKVNVAATLSVLCK-DEDLRLKVLLG 124 (2054)
Q Consensus 51 ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~-----s~evr~~AA~vL~~Ls~-~ee~r~~v~~~ 124 (2054)
...+......|++||.|....++.+|+.+.+ .|+.+.++..|+.. ++++..-..++|..++. ..+.+.++.+.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~-~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVD-LGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3456677899999999999999999999998 89999999999987 78999999999988875 45667666654
Q ss_pred -CChHHHHHhhcc-----------------CCHHHHHHHHHHHHHHhcCCCCCCh-hHHHHHHHcCcHHHHHHhh--CCC
Q 000145 125 -GCIPPLLSLLKS-----------------ESTDTRKAAAEALYEVSSGGLSDDH-VGMKIFVTEGVVPTLWDQL--NPK 183 (2054)
Q Consensus 125 -GaIp~LV~LL~s-----------------ed~eVr~aAa~AL~nLS~~~~nk~~-~~re~Iv~aG~Vp~Lv~LL--~s~ 183 (2054)
+++..+...|.. .+.+....+++.+.|+..+...... .....+. ..++.+..++ ...
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~--~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIP--HLVSILRRLLPPPPS 198 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHH--HHHHHHHHHhccCCC
Confidence 777777765532 1445677888999999875321111 1111111 1334444442 111
Q ss_pred CCCChhHHHHHHHHHHHHhcCCCch-------hHH----HHhhCChHHHHhhhccC----C----HHHHHHHHHHHHHHH
Q 000145 184 NKQDNVVQGFVTGALRNLCGDKDGY-------WRA----TLEAGGVDIIVGLLSSD----N----AAAQSNAASLLARLM 244 (2054)
Q Consensus 184 s~~d~~V~e~Al~aL~nL~~~~e~r-------~~a----I~eaGGI~~LV~LL~s~----s----~evq~~A~~aL~nLs 244 (2054)
...-.....+++.+|.|+--..... ... -.....+..|+.+|... . .+.-...+.+|.+++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 1122346778899999883211000 000 01112456666666542 1 244556677777777
Q ss_pred hhcCCCcchhc----------------ccchHHHHHHHhccCCChhHHHHHHHHHHHHhhc
Q 000145 245 LAFGDSIPTVI----------------DSGAVKALVQLVGQNNDISVRASAADALEALSSK 289 (2054)
Q Consensus 245 ~~~~~~r~~i~----------------~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~ 289 (2054)
..+...|+.+. ....-..|++++.+.. ..++..+...+..|+..
T Consensus 279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~-~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPD-PQLKDAVAELLFVLCKE 338 (446)
T ss_pred HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCC-chHHHHHHHHHHHHHhh
Confidence 55444443321 2235677888888543 78898888888888774
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.8 Score=54.58 Aligned_cols=446 Identities=14% Similarity=0.115 Sum_probs=224.3
Q ss_pred cccHHHHHh-hhcCCChhhhHHHHHHHHHHhhhccchhhHHHh---hCCCc--------------hHhhhh-hcCCHHHH
Q 000145 473 REGIQLLIS-LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA---AGGIP--------------PLVQLL-EAGSQKAR 533 (2054)
Q Consensus 473 ~ggIp~LV~-LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~---aGaIp--------------~LV~LL-~s~s~~Vr 533 (2054)
.+|-|.|+. -+++.++..|..|+..+..+-.++...-....+ ....| .|+..| ...++.+.
T Consensus 45 ~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~ 124 (728)
T KOG4535|consen 45 ELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTV 124 (728)
T ss_pred CCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence 467777665 467788888888888877775532211111000 11111 222223 34477888
Q ss_pred HHHHHHHHHHhcCChhHHHHHH-HcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc----------------------
Q 000145 534 EVAAHVLWILCCHSEDIRACVE-SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---------------------- 590 (2054)
Q Consensus 534 e~AA~aL~nLa~~sd~~r~~I~-e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---------------------- 590 (2054)
.++...|.+|..+.+.-+-.+. -...+..+-.+.++.++.++..+...+..+.....
T Consensus 125 tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h 204 (728)
T KOG4535|consen 125 TQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPH 204 (728)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCC
Confidence 8999999999875543332211 02233334456788899998888888877764410
Q ss_pred ---hhhH------HHHHHHhcCC----------------------------------------CcchHHHHHHHHHHHHh
Q 000145 591 ---SATI------NQLLALLLGD----------------------------------------SPSSKAHVIKVLGHVLT 621 (2054)
Q Consensus 591 ---~~~I------p~Lv~LL~~~----------------------------------------~~~V~~~a~~AL~~La~ 621 (2054)
.+.. +.++++=.++ ...++..+...|..++.
T Consensus 205 ~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~ 284 (728)
T KOG4535|consen 205 LSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLAR 284 (728)
T ss_pred CCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHH
Confidence 0000 1111111000 01122223333332221
Q ss_pred hhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhc-----ChhhhhhhhhCCCHHHHH------HHh-c
Q 000145 622 MALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM-----RQDICGSLATDEIVNPCM------RLL-T 689 (2054)
Q Consensus 622 ~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~-----~~e~r~~Iv~~g~V~~Lv------~LL-~ 689 (2054)
...-...+.. ...+.+..-+.+..+.+++.++..+-.+..+ .|+..+.-...+-...+. ... .
T Consensus 285 ~~~~~~~~~~-----~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YD 359 (728)
T KOG4535|consen 285 YFSMTQAYLM-----ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYD 359 (728)
T ss_pred HHHHHHHHHH-----HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhh
Confidence 1110000000 0111222223345789999999999988753 122211111222111111 111 1
Q ss_pred cCCHHHHHHHHHHHHHhhC-CCCcccc-hhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHH-HHhcCc
Q 000145 690 SNTQMVATQSARALGALSR-PTKTKTT-NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAE-VLLEDV 766 (2054)
Q Consensus 690 dgs~~vr~~AA~AL~nLs~-s~~~~d~-~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~-Iv~~g~ 766 (2054)
+..+..+..++.++.++.. .+...|+ .+.. .+--+...-.+.+.-++.+|.++++-+.-+|..|.. +.-.++
T Consensus 360 s~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~-----~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~a 434 (728)
T KOG4535|consen 360 SEHPTLQASACDALSSILPEAFSNLPNDRQTL-----CITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADA 434 (728)
T ss_pred hcCCCchhHHHHHHhhcCchhhcCCCCcchhh-----hHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHH
Confidence 2334567778888888875 2221122 2210 001111111223334666889998888888888764 344566
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhc----CCCchhHhhhhhhhhhHHHHHHhhc-cCCCCchhHHHHHHHHHHHhh
Q 000145 767 VSALTRVLAEGTSEGKKNASRALHQLLKH----FPVGDVLKGNAQCRFVVLTLVDSLN-AMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 767 I~~LV~LL~s~~~evr~~Aa~AL~nL~~~----~~~~e~i~~~i~~~g~v~~LV~LL~-sg~~~~~~~~~AL~ALa~La~ 841 (2054)
...+...+.+..-..|.+++|+++|+..- .|..+.....+. ...+.+++.+-. +.-+..+.+..|.++|+++..
T Consensus 435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 77777778777788999999999998642 222111111110 112223332221 112334568889999999874
Q ss_pred cccCCCccCCcccccccCCCchHHHHHhhhcCC-hhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCc
Q 000145 842 TKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGP-PPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSL 920 (2054)
Q Consensus 842 ~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~-~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ 920 (2054)
--....+.. ... ...+.+..+..+..-++ -.+|=+|-.+++|++.+..-++.+ ..=.+.-.+.|..=+....+.
T Consensus 514 vlq~i~~~~--~~e--~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~-~~wA~~~F~~L~~Lv~~~~NF 588 (728)
T KOG4535|consen 514 FLQPIEKPT--FAE--IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQT-APWASQAFNALTSLVTSCKNF 588 (728)
T ss_pred HHHHhhhcc--HHH--HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccC-CCchHHHHHHHHHHHHHhccc
Confidence 211111111 111 11223333333333333 338999999999999876432211 111122233445555578899
Q ss_pred eeehhhhHHHHHhc
Q 000145 921 EVRVGGAALLICAA 934 (2054)
Q Consensus 921 ev~~~~~~~~i~~~ 934 (2054)
+||+-++..+-.-+
T Consensus 589 KVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 589 KVRIRAAAALSVPG 602 (728)
T ss_pred eEeehhhhhhcCCC
Confidence 99999988886443
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=6.8 Score=55.79 Aligned_cols=200 Identities=13% Similarity=0.153 Sum_probs=102.6
Q ss_pred cCCHHHHHHHHHHHHHHhcCChh-HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCC
Q 000145 527 AGSQKAREVAAHVLWILCCHSED-IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDS 605 (2054)
Q Consensus 527 s~s~~Vre~AA~aL~nLa~~sd~-~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~ 605 (2054)
+.-+++|..+..++..|+.+... .+-.+ ...||.|++....-.+.+....+.=+.|. +.++++.+-.-....+
T Consensus 1142 s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vLnYls~r~~~~----e~ealDt~R~s~akss 1215 (1702)
T KOG0915|consen 1142 SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVLNYLSLRLINI----ETEALDTLRASAAKSS 1215 (1702)
T ss_pred cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHHHHHHHhhhhh----HHHHHHHHHHhhhcCC
Confidence 45689999999999999875432 11111 33455555555544444433222211222 2222322222111122
Q ss_pred cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccC-CHHHHHHHHHHHHHHhhc-ChhhhhhhhhCCCHHH
Q 000145 606 PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSM-RQDICGSLATDEIVNP 683 (2054)
Q Consensus 606 ~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~-~~e~r~~Iv~~g~V~~ 683 (2054)
|- -+-.-.|+.++ +. ... ...++.+.++++++ .-.+|-.++..+.-|+.. ..+... .....+..
T Consensus 1216 pm-meTi~~ci~~i----D~-~vL------eelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKll~a 1281 (1702)
T KOG0915|consen 1216 PM-METINKCINYI----DI-SVL------EELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKLLRA 1281 (1702)
T ss_pred cH-HHHHHHHHHhh----hH-HHH------HHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHHHHH
Confidence 21 11111222211 11 111 12478888888877 566777777777776542 111110 11234567
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 684 CMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 684 Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
++..+++.++.+++.-+.|.+.|+.-..+ ++... .+..++..+-...+..+..++..+.|++.
T Consensus 1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~--dq~qK-----Lie~~l~~~l~k~es~~siscatis~Ian 1344 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSP--DQMQK-----LIETLLADLLGKDESLKSISCATISNIAN 1344 (1702)
T ss_pred HhhccccccHHHHHHHHHHHHHHHhcCCh--HHHHH-----HHHHHHHHHhccCCCccchhHHHHHHHHH
Confidence 77777899999999999999999873222 33332 23333333222333334667777777654
|
|
| >KOG2734 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.61 Score=58.28 Aligned_cols=208 Identities=16% Similarity=0.193 Sum_probs=153.7
Q ss_pred HHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCC-CCCh----hHHHHHHHcCcHHHHHH
Q 000145 104 VAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGL-SDDH----VGMKIFVTEGVVPTLWD 178 (2054)
Q Consensus 104 AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~-nk~~----~~re~Iv~aG~Vp~Lv~ 178 (2054)
...-+..++.-++.-..+++..+++.|+.+|++++.++..+....|..|...+. +.+. .-.+.+++.++++.|++
T Consensus 104 ~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 104 IIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 344466677778888888899999999999999999999999999999986421 0112 23456677889999987
Q ss_pred hhC---CCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHHHHHHHHHHHHHhhcCCCcch
Q 000145 179 QLN---PKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGDSIPT 253 (2054)
Q Consensus 179 LL~---s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq~~A~~aL~nLs~~~~~~r~~ 253 (2054)
-+. ...+++..=....+..+.|+..-.+.....+.+.|-+.+|+..+... -..-..+|..+|.-+...+.+.+..
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~ 263 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKL 263 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhh
Confidence 664 33333333345678889999998888888888888899998866543 2456788888888888666667777
Q ss_pred hcccchHHHHHHHhc----cC----CChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcC
Q 000145 254 VIDSGAVKALVQLVG----QN----NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2054)
Q Consensus 254 i~~sGaL~~LL~LL~----s~----~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s 312 (2054)
...-.++..+++-+. ++ ...+..+.--.+|+.+.. .+.+|..+....|++..+-++..
T Consensus 264 ~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr~ 329 (536)
T KOG2734|consen 264 LGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLRE 329 (536)
T ss_pred hcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHHH
Confidence 788888888887664 12 123445566667777777 48999999999998877766654
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.027 Score=51.10 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 738 IDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 738 ~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
+.+|..|+++|++++........-.....++.|..++.++++.+|.+|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999986444333335667999999999999999999999999875
|
... |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.5 Score=54.38 Aligned_cols=200 Identities=16% Similarity=0.161 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhh-hcCcHHHHHHHHccCCHHHHHHHHHHHHHhccC--
Q 000145 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGS-HAQAMPLFISILRSGTPLAKVNVAATLSVLCKD-- 114 (2054)
Q Consensus 38 ~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~-~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~-- 114 (2054)
...+..+|+.+..++ .+.|+.++..+.++...+-.. .++.+ ....++.+.+.++.|..+-+..|++++..++..
T Consensus 42 e~~L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~~-d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 42 EDKLKEAIDLLTEKS--SSTREAALEALIRALSSRYLP-DFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcC
Confidence 456888999887764 678999999999997665222 22221 123577888888888877777888888777533
Q ss_pred -chhHHHHHhcCChHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHh--hCCCCC----
Q 000145 115 -EDLRLKVLLGGCIPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ--LNPKNK---- 185 (2054)
Q Consensus 115 -ee~r~~v~~~GaIp~LV~LL~s--ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~L--L~s~s~---- 185 (2054)
.+....+. ....|.|.+.+.+ .++.+|..|+.+|..++..+.. +........ ..+..++.. .+.+.+
T Consensus 119 ~g~~~~ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~-d~~~~~~~~--~~le~if~~~~~~~~~~~~~~ 194 (309)
T PF05004_consen 119 AGEDSEEIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGS-DEEETEELM--ESLESIFLLSILKSDGNAPVV 194 (309)
T ss_pred CCccHHHHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC-ChhHHHHHH--HHHHHHHHHHhcCcCCCcccc
Confidence 12222332 3567888899887 3677888998888888764222 221111111 122222222 222111
Q ss_pred ---CChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 000145 186 ---QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2054)
Q Consensus 186 ---~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs 244 (2054)
....+...|+.+..-|...-+.....-.-...++.|..+|.+.+.++|..|-.+|.-|.
T Consensus 195 ~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 195 AAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 12356667766666555544432111111336899999999999999999988887766
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.05 Score=68.49 Aligned_cols=292 Identities=11% Similarity=0.073 Sum_probs=183.5
Q ss_pred HHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh
Q 000145 493 YAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP 572 (2054)
Q Consensus 493 ~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~ 572 (2054)
.++..|..+++...--|.-+.+....++|+++|.+++..+...+...++|+...-...++.+.+.|.+..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 34445555665444456666777888999999999888888889999999988778889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhch---------hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhccc----ch
Q 000145 573 KGQDASAMALTKLIRAADS---------ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK----GL 639 (2054)
Q Consensus 573 evq~~AA~AL~nLs~~~e~---------~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~G----aI 639 (2054)
.+|.+..|.|..+....+. -.+..++.+..+.+-.++.++...++|+......++..+....+.. ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 9999999999988776432 1345677888888899999999999999875443222222211111 24
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhC-CCHHHHHHHhcc---------CCH--HHHHHHHHHHHHhh
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD-EIVNPCMRLLTS---------NTQ--MVATQSARALGALS 707 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~-g~V~~Lv~LL~d---------gs~--~vr~~AA~AL~nLs 707 (2054)
+.|+..++..++-.-+..+-.|.+++..+...+..+.++ +.+..+...+.. |+. .+-..-.....++.
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~ 647 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS 647 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence 556666676666555555677777777666666666554 444444444421 100 01111111111111
Q ss_pred CCCCcccchhHHHHhcCCh--hhHHhhhhc---CCHHHHHHHHHHHHHhhCChH---------HHHHHHhcCcHHHHH-H
Q 000145 708 RPTKTKTTNKMSYIAEGDV--KPLIKLAKT---SSIDAAETAVAALANLLSDPD---------IAAEVLLEDVVSALT-R 772 (2054)
Q Consensus 708 ~s~~~~d~~r~~I~~~gaV--~~Lv~LL~s---~d~~Vre~Al~AL~NLa~~~e---------~r~~Iv~~g~I~~LV-~ 772 (2054)
.+ .++.. .+.. |++=..=++ .+++.-.+..|...|+.|... -|-.+.-+.|+...+ .
T Consensus 648 e~---~d~f~-----r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k 719 (743)
T COG5369 648 EN---SDKFK-----RLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVK 719 (743)
T ss_pred cc---ccccc-----cceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHH
Confidence 10 01111 1111 333222111 344566677888888876321 233444445555554 5
Q ss_pred HHcCCCHHHHHHHHHHHHHh
Q 000145 773 VLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 773 LL~s~~~evr~~Aa~AL~nL 792 (2054)
...++++.+|+++-.+|.++
T Consensus 720 ~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 720 IQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HhccCcHHHHHHHHHHHHhh
Confidence 55566789999999999876
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.98 Score=61.26 Aligned_cols=182 Identities=15% Similarity=0.147 Sum_probs=143.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHH-HhccCchhHHHHHhcCChHHHHHhhcc
Q 000145 58 RELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLS-VLCKDEDLRLKVLLGGCIPPLLSLLKS 136 (2054)
Q Consensus 58 re~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~-~Ls~~ee~r~~v~~~GaIp~LV~LL~s 136 (2054)
|..||..|..+..--+=+-..-.. -|..|.++++|++...+.|.--+-+=. -|+.|+..+..+++.++-...++.|.+
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLs-VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALS-VGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhc-cchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 566777777665444344444444 688999999999999999876666654 457787888888888888888888877
Q ss_pred -C--CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHH
Q 000145 137 -E--STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL 213 (2054)
Q Consensus 137 -e--d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~ 213 (2054)
. +++-|..|+-.|..+..+ -+.|.+...+.+.+..-+++|.++. ++-++..++-+|+.|=.+.+..+-.=.
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~n----f~lGQ~acl~~~li~iCle~lnd~~--~pLLrQW~~icLG~LW~d~~~Arw~G~ 639 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRN----FKLGQKACLNGNLIGICLEHLNDDP--EPLLRQWLCICLGRLWEDYDEARWSGR 639 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcc----cchhHHHhccccHHHHHHHHhcCCc--cHHHHHHHHHHHHHHhhhcchhhhccc
Confidence 3 678999999999999973 5678899999999999999998753 467788888889988777654433344
Q ss_pred hhCChHHHHhhhccCCHHHHHHHHHHHHHHHhh
Q 000145 214 EAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246 (2054)
Q Consensus 214 eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~ 246 (2054)
+.++.+.|..+|.++.+++|..|+.+|..+...
T Consensus 640 r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 640 RDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 567899999999999999999999999998853
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.77 Score=59.60 Aligned_cols=252 Identities=14% Similarity=0.097 Sum_probs=158.3
Q ss_pred HHHHhhcChhhhHHHhhcchHHHHHHHh----------ccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhh
Q 000145 414 AMASLYGNIFLSQWVSHAEAKKVLIGLI----------TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2054)
Q Consensus 414 AL~~L~~n~~~~~~L~~~g~I~~LI~LL----------~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL 483 (2054)
+|--+.+++.....+...+++..|..+- ...+.++...|..+|+|+...++..++...+.|+.+.++..+
T Consensus 4 ~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~L 83 (446)
T PF10165_consen 4 TLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERL 83 (446)
T ss_pred HHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHH
Confidence 3334455666666677777777776665 335688899999999999999899999999999999999999
Q ss_pred cCC-----ChhhhHHHHHHHHHHhhhccchhhHHHhh-CCCchHhhhhhc-----------------CCHHHHHHHHHHH
Q 000145 484 GLS-----SEQHQEYAVQLIAILTEQVDDSKWAITAA-GGIPPLVQLLEA-----------------GSQKAREVAAHVL 540 (2054)
Q Consensus 484 ~s~-----d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~a-GaIp~LV~LL~s-----------------~s~~Vre~AA~aL 540 (2054)
+.. +.++.....+.|.-++....+.+..+.+. +++..++..|.. .+......+..++
T Consensus 84 k~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKll 163 (446)
T PF10165_consen 84 KNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLL 163 (446)
T ss_pred HcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHH
Confidence 876 67788888888888887667777666654 677777765421 1234455677888
Q ss_pred HHHhcCChhHHHHHHHcCChHHHHHhhcc---------CChhHHHHHHHHHHHHHHh-------------------hchh
Q 000145 541 WILCCHSEDIRACVESAGAVPAFLWLLKS---------GGPKGQDASAMALTKLIRA-------------------ADSA 592 (2054)
Q Consensus 541 ~nLa~~sd~~r~~I~e~GaI~aLV~LLkS---------~~~evq~~AA~AL~nLs~~-------------------~e~~ 592 (2054)
.|++.+...... -...+.++.|+.++.. .......++..+|.|+-.. ....
T Consensus 164 FNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~ 242 (446)
T PF10165_consen 164 FNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMD 242 (446)
T ss_pred HHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChH
Confidence 999876443322 1224556666654332 1235677888888877211 0122
Q ss_pred hHHHHHHHhcC-----CC---cchHHHHHHHHHHHHhhh------------cchHHHHhhhh-cccchHHHHHHhccCCH
Q 000145 593 TINQLLALLLG-----DS---PSSKAHVIKVLGHVLTMA------------LQEDLVQKGSA-ANKGLRSLVQVLNSSNE 651 (2054)
Q Consensus 593 ~Ip~Lv~LL~~-----~~---~~V~~~a~~AL~~La~~~------------~~~d~~~~~l~-~~GaI~~LV~LLks~s~ 651 (2054)
.+..|+.+|.. .. ++.-.-...+|..++... +....+..... ....-..|+.++.+..+
T Consensus 243 ~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~ 322 (446)
T PF10165_consen 243 VVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDP 322 (446)
T ss_pred HHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCc
Confidence 44555555531 11 111122233333333211 00011111112 22335679999998889
Q ss_pred HHHHHHHHHHHHHhh
Q 000145 652 ENQEYAASVLADLFS 666 (2054)
Q Consensus 652 evre~Aa~ALanLas 666 (2054)
.+|..++..|..||.
T Consensus 323 ~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 323 QLKDAVAELLFVLCK 337 (446)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999986
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.04 E-value=24 Score=49.25 Aligned_cols=365 Identities=13% Similarity=0.084 Sum_probs=184.3
Q ss_pred HHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccC-CHHHHHHHHHHHHHhcccCccchhhhhc
Q 000145 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA-TADVREYLILSLTKLCRREVGIWEAIGK 472 (2054)
Q Consensus 394 ~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ss-d~evq~~Aa~AL~~Ls~~s~e~r~~Ive 472 (2054)
.|..-+++.+.. ++..++..++.+..... ..+ ....+...++++.-. ++.....++-+|+.++...-..-..+
T Consensus 345 ~Lls~l~d~dt~-VrWSaAKg~grvt~rlp--~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l-- 418 (1133)
T KOG1943|consen 345 HLLSALSDTDTV-VRWSAAKGLGRVTSRLP--PEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL-- 418 (1133)
T ss_pred HHHHhccCCcch-hhHHHHHHHHHHHccCc--HHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH--
Confidence 334445555554 99999999999965432 111 123455566655433 36667788899999987632222111
Q ss_pred cccHHHHHhhhcCC--------ChhhhHHHHHHHHHHhhhccchh-hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHH
Q 000145 473 REGIQLLISLLGLS--------SEQHQEYAVQLIAILTEQVDDSK-WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL 543 (2054)
Q Consensus 473 ~ggIp~LV~LL~s~--------d~~Vr~~Aa~aL~nLs~~s~e~r-~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nL 543 (2054)
...+|.++.-+.-+ ...+|..|+..++.+++....+. ..+...=.-..|...+.+.+-.+|+.|..++...
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~ 498 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQEN 498 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHH
Confidence 13456655554322 33589999999999988533221 0011110111122234455677888888777654
Q ss_pred hcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh------hchhhHHHHHH-H----hcCCCcchHHHH
Q 000145 544 CCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA------ADSATINQLLA-L----LLGDSPSSKAHV 612 (2054)
Q Consensus 544 a~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~------~e~~~Ip~Lv~-L----L~~~~~~V~~~a 612 (2054)
.. +.|-.|.=+.+..+-+ +.+..-..|+..+ .-.+...++.+ + +..=+..++..+
T Consensus 499 VG----------R~~n~p~Gi~Lis~~d----y~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irela 564 (1133)
T KOG1943|consen 499 VG----------RQGNFPHGISLISTID----YFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELA 564 (1133)
T ss_pred hc----------cCCCCCCchhhhhhcc----hhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHH
Confidence 32 1222211111221111 1111111221111 01122222222 2 222345677778
Q ss_pred HHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhh---hhhhh---CC---CHHH
Q 000145 613 IKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC---GSLAT---DE---IVNP 683 (2054)
Q Consensus 613 ~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r---~~Iv~---~g---~V~~ 683 (2054)
..+|..|+.-.+. ....+.+++++...-+++...|..+.-+.+.+........ ....+ .+ .+++
T Consensus 565 a~aL~~Ls~~~pk-------~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~ 637 (1133)
T KOG1943|consen 565 AYALHKLSLTEPK-------YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPP 637 (1133)
T ss_pred HHHHHHHHHhhHH-------hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccH
Confidence 8888776432211 1234568888888888888888877777766654321111 00000 11 2333
Q ss_pred HHH-HhccCC-HHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-----ChH
Q 000145 684 CMR-LLTSNT-QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-----DPD 756 (2054)
Q Consensus 684 Lv~-LL~dgs-~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-----~~e 756 (2054)
+.. .+..|. .-.+..-...+.+++.+.. .........++-..+.+.+...+ .+++.|.+++..+++ |+.
T Consensus 638 ~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~---~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~ 713 (1133)
T KOG1943|consen 638 ICDRYFYRGQGTLMRQATLKFIEQLSLSKD---RLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEG 713 (1133)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhccc---hhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCch
Confidence 322 222232 3344445666667665222 22223344445555556664444 788899999998875 221
Q ss_pred HHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhh
Q 000145 757 IAAEVLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLK 794 (2054)
Q Consensus 757 ~r~~Iv~~g~I~~LV~LL~s~-~~evr~~Aa~AL~nL~~ 794 (2054)
... ..+...+..+.+. +..+|+--.-++.++..
T Consensus 714 ~~~-----~li~~~ls~~~~~~~~~~r~g~~lal~~lp~ 747 (1133)
T KOG1943|consen 714 EEA-----PLITRYLSRLTKCSEERIRRGLILALGVLPS 747 (1133)
T ss_pred hhh-----HHHHHHHHHhcCchHHHHHHHHHHHHccCcH
Confidence 111 2233333334444 56777777777777764
|
|
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.62 Score=61.15 Aligned_cols=260 Identities=18% Similarity=0.158 Sum_probs=146.2
Q ss_pred cHHHHHhhhcCCC-hhhhHHHHHHHH--HHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHH
Q 000145 475 GIQLLISLLGLSS-EQHQEYAVQLIA--ILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2054)
Q Consensus 475 gIp~LV~LL~s~d-~~Vr~~Aa~aL~--nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r 551 (2054)
.+..|.+.|++.+ +.++..++-.|+ +++..+.+ ....+-..|..++.-.-+.|.-+.+-+.... .+
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~e---------iYe~lKevLy~D~AvsGEAAgi~MGl~mlGt-~~- 482 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEE---------IYEKLKEVLYNDSAVSGEAAGIAMGLLMLGT-AN- 482 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccHH---------HHHHHHHHHhccchhhhhHHHHhhhhHhhCc-Cc-
Confidence 4567788777654 445555555543 33332211 2344555566655555555554444443211 11
Q ss_pred HHHHHcCChHHHHHhhccC-ChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 552 ACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 552 ~~I~e~GaI~aLV~LLkS~-~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
..++.-++...... ...+++..+..+.-.......++-+.+.+++.+.++-.+..-.-+++.- .
T Consensus 483 -----~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alA-y--------- 547 (929)
T KOG2062|consen 483 -----QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALA-Y--------- 547 (929)
T ss_pred -----HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHH-H---------
Confidence 22344444444332 2344444443333333333344556666777777666554332222211 1
Q ss_pred hhhhcccchHHHHHH-hccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhC
Q 000145 631 KGSAANKGLRSLVQV-LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSR 708 (2054)
Q Consensus 631 ~~l~~~GaI~~LV~L-Lks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d-gs~~vr~~AA~AL~nLs~ 708 (2054)
.+-...++|+.|.++ .++.|+++|..|+.+|.-++..+++. .+..+.+|.+ -++.||-.+|.||+-.+.
T Consensus 548 ~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 548 VGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred hccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhc
Confidence 112345678888887 56679999999999999998755543 4666777765 589999999999998887
Q ss_pred CCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHH
Q 000145 709 PTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEG 781 (2054)
Q Consensus 709 s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~~ev 781 (2054)
+. +.+. ++..|-.+..+...-||.-|+-+++-+.. ++....+. .+....+.+++.+.+++.
T Consensus 619 Gt----G~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 619 GT----GLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDG 681 (929)
T ss_pred CC----CcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHH
Confidence 33 3332 34444455567777889989988887743 22221111 123344556666665543
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.84 E-value=27 Score=48.80 Aligned_cols=730 Identities=15% Similarity=0.106 Sum_probs=321.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcC---cHHHHHHHHccCC------HHHHHHHHHHHHHh
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQ---AMPLFISILRSGT------PLAKVNVAATLSVL 111 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aG---gVp~LV~LLks~s------~evr~~AA~vL~~L 111 (2054)
|..+....+....+.++-..+...|+.+++-+ ..|..+.-... -++.++.+|...+ .+.+.-....|.-+
T Consensus 74 v~~L~~~v~~~~~d~~~~~l~~e~ly~l~kvr-gyK~v~k~fPh~V~~Le~il~lL~~~npss~~~~~~ryilLlWLsvl 152 (1133)
T KOG1943|consen 74 VPNLLDIVRKFTIDLGELHLAFEYLYILCKVR-GYKAVLKLFPHQVSDLEPILDLLERQNPSSFSDWETRYILLLWLSVL 152 (1133)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHhhc-cchhhHHhCCcHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHH
Confidence 33344444444445455555666788887765 33443322122 3677788888332 34455555555554
Q ss_pred ccCc-hhH---HHHHhc--CChHHHHHhhcc---CCHHHHHHHHHHHHHHhcCCCC--------------CChhHHHHHH
Q 000145 112 CKDE-DLR---LKVLLG--GCIPPLLSLLKS---ESTDTRKAAAEALYEVSSGGLS--------------DDHVGMKIFV 168 (2054)
Q Consensus 112 s~~e-e~r---~~v~~~--GaIp~LV~LL~s---ed~eVr~aAa~AL~nLS~~~~n--------------k~~~~re~Iv 168 (2054)
..++ +.+ ..+... ..+..++....+ .+.-.+..|+-.+..+-...+- ++......+.
T Consensus 153 llnPF~l~rlD~s~~~~kt~~i~rI~~~~~~Yl~~~~~~r~~aalllsk~~sR~D~~~~~~~Fl~~~l~~~s~~~~n~~~ 232 (1133)
T KOG1943|consen 153 LLNPFDLSRLDESLTFDKTNVILRILSFFENYLISSGILRRSAALLLSKLFSRTDVKDLLLSFLDWLLDCPSTETPNIFY 232 (1133)
T ss_pred HcCCCcccccCcccccCCchHHHHHHHHHHHHHhccchhHHHHHHHHHHHcccccHHHHHHHHHHHhhcccchhhhhhHH
Confidence 4332 100 000111 123344433211 2335666666666555431100 0111122445
Q ss_pred HcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhh-----ccC--CHHHHHHHHHHHH
Q 000145 169 TEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL-----SSD--NAAAQSNAASLLA 241 (2054)
Q Consensus 169 ~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL-----~s~--s~evq~~A~~aL~ 241 (2054)
.-|....+..+++..+. +.+...+...++.+....+..............+++.+ ... +...+...-.+-.
T Consensus 233 ~~g~L~al~ai~k~~~r--~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~QRiGlv~l~prs~sWrY~rg~rsl~~ 310 (1133)
T KOG1943|consen 233 KLGFLIALLAIFKHGSR--KDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLVQRIGLVSLKPRSPSWRYSRGTRSLAS 310 (1133)
T ss_pred HHHHHHHHHHHHHhcch--hhhHHHhhhhhHhhcccccccccHhHHHHHHHHHHHHhhheecCCCCcchhhhcccchhhh
Confidence 55666667776665542 23555556666666555432211011101112222211 111 1222222222222
Q ss_pred HHHh---------------hcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHH
Q 000145 242 RLML---------------AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVL 306 (2054)
Q Consensus 242 nLs~---------------~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~L 306 (2054)
||.. .+.+. -...-++++..|+..+. +.|..+|..|+.-+..+....+ ..+ ....+...
T Consensus 311 nl~~~s~~~~~~~~~~~~d~e~ed-v~eivE~vie~Lls~l~-d~dt~VrWSaAKg~grvt~rlp---~~L-ad~vi~sv 384 (1133)
T KOG1943|consen 311 NLDPDSFAPSEPVILQQDDDEGED-VPEIVEFVIEHLLSALS-DTDTVVRWSAAKGLGRVTSRLP---PEL-ADQVIGSV 384 (1133)
T ss_pred ccCccccccCcccccccccccccc-cHHHHHHHHHHHHHhcc-CCcchhhHHHHHHHHHHHccCc---HHH-HHHHHHHH
Confidence 2220 00000 00112356777777777 5777899999999988887644 111 12234445
Q ss_pred HHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhc--CchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCc
Q 000145 307 IGAIVAPSKECMQGQRGQALQGHATRALANIYG--GMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDE 384 (2054)
Q Consensus 307 IeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsG--gis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~ 384 (2054)
+++ ..|-.+ ..+.. .+.-+|+.++. -+.+ .....-+.-++..+-|..++..
T Consensus 385 id~-~~p~e~------~~aWH-gacLaLAELA~rGlLlp-----------s~l~dVvplI~kaL~Yd~~~G~-------- 437 (1133)
T KOG1943|consen 385 IDL-FNPAED------DSAWH-GACLALAELALRGLLLP-----------SLLEDVVPLILKALHYDVRRGQ-------- 437 (1133)
T ss_pred HHh-cCcCCc------hhHHH-HHHHHHHHHHhcCCcch-----------HHHHHHHHHHHHHhhhhhhhcc--------
Confidence 552 222211 11122 35556666542 1111 0001111222223333222110
Q ss_pred ccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhh---cChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 000145 385 PFDARQIEDILVMLLKPHDNKLVQERVLEAMASLY---GNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCR 461 (2054)
Q Consensus 385 ~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~---~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~ 461 (2054)
......+|+.|+.....++ ...++.. +.+.=.-..|+.-+-+.+-..++.|..++.....
T Consensus 438 ----------------~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VG 500 (1133)
T KOG1943|consen 438 ----------------HSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALFDREVNCRRAASAALQENVG 500 (1133)
T ss_pred ----------------cccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhc
Confidence 1111237777777666663 3333333 2221122234444555667788888888877654
Q ss_pred cCccchhhhhccccHHHHHhhhcCCCh---hhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHH
Q 000145 462 REVGIWEAIGKREGIQLLISLLGLSSE---QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAH 538 (2054)
Q Consensus 462 ~s~e~r~~Ive~ggIp~LV~LL~s~d~---~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~ 538 (2054)
..... .-||+ ++.+-|. ..|.++-..++.--.+.+.++..+.+.-.. +-+..=|..+|+.+++
T Consensus 501 R~~n~------p~Gi~----Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t----~Kv~HWd~~irelaa~ 566 (1133)
T KOG1943|consen 501 RQGNF------PHGIS----LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLT----KKVCHWDVKIRELAAY 566 (1133)
T ss_pred cCCCC------CCchh----hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHh----cccccccHHHHHHHHH
Confidence 41111 12333 2222221 122222222222212223333333322000 0022338999999999
Q ss_pred HHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHH
Q 000145 539 VLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGH 618 (2054)
Q Consensus 539 aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~ 618 (2054)
+|.+|+....+. ...+.+++++...-+.+...+..+..+.+.+..... .+.++..- ...+....+-.
T Consensus 567 aL~~Ls~~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~--~l~~~~~~-------l~e~~i~~l~~ 633 (1133)
T KOG1943|consen 567 ALHKLSLTEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALR--KLEPVIKG-------LDENRIAGLLS 633 (1133)
T ss_pred HHHHHHHhhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhh--hhhhhhhh-------hHHHHhhhhhh
Confidence 999997643321 235678888888888888888777776666653311 00000000 00000000000
Q ss_pred HHhhhcchHHHHhhhhcccchHHHHH-HhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000145 619 VLTMALQEDLVQKGSAANKGLRSLVQ-VLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2054)
Q Consensus 619 La~~~~~~d~~~~~l~~~GaI~~LV~-LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr 696 (2054)
.++++.. ....+ ..-.+......+-.+...........+..+--.-+.+.+++.+ .+|
T Consensus 634 -------------------ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~ 693 (1133)
T KOG1943|consen 634 -------------------IIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIR 693 (1133)
T ss_pred -------------------hccHHHHHHhccchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHH
Confidence 0111111 11111 1233334444444544433333333333333333444443333 677
Q ss_pred HHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcC-CHHHHHHHHHHHHHhhC---ChHHHHHHHhcCcHHHHHH
Q 000145 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS-SIDAAETAVAALANLLS---DPDIAAEVLLEDVVSALTR 772 (2054)
Q Consensus 697 ~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~-d~~Vre~Al~AL~NLa~---~~e~r~~Iv~~g~I~~LV~ 772 (2054)
..|..++..+...-...|.... ...+...+.-+... +..++.--..+++++-. +-..++.+ ...+..
T Consensus 694 ~~av~av~~l~s~y~~~d~~~~----~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~i~~~~q~~l-----c~~~l~ 764 (1133)
T KOG1943|consen 694 DAAVSAVSDLVSTYVKADEGEE----APLITRYLSRLTKCSEERIRRGLILALGVLPSELIHRHLQEKL-----CKLVLE 764 (1133)
T ss_pred HHHHHHHHHHHHHHHhcCchhh----hHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHhhchHHHHHH-----HHHHhc
Confidence 8888888888751111011110 01223333334333 44455545555555532 22333333 333334
Q ss_pred HHcCC-CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhcc------CCCCchhHHHHHHHHHHHhhcccC
Q 000145 773 VLAEG-TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNA------MDMNGTDVADALEVVALLARTKQG 845 (2054)
Q Consensus 773 LL~s~-~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~s------g~~~~~~~~~AL~ALa~La~~~~~ 845 (2054)
...++ +++-|...+.++.+.+..... ....-.-......|++.+++ |+-..-.+.+|+.++..+...-..
T Consensus 765 ~~p~d~~a~aR~~~V~al~~v~~~~~~---~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~ 841 (1133)
T KOG1943|consen 765 LLPSDAWAEARQQNVKALAHVCKTVTS---LLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSS 841 (1133)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHH---hhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcC
Confidence 33444 778899999999988875320 00000013345566666653 333334677888777766532111
Q ss_pred CCccCCcccccccCCCchHHHHH-hhh---cCChhHHHHHHHHHHHhhcc
Q 000145 846 LNFTYPPWAALAEVPSSIEPLVC-CLA---EGPPPLQDKAIEILSRLCGD 891 (2054)
Q Consensus 846 ~~~i~~~~~~~~~~~~~L~~Lv~-ll~---~~~~~vq~~Ai~iL~~L~~~ 891 (2054)
.... .+..+.+++. +.. ++...+++-|..++.++.-.
T Consensus 842 p~~l---------d~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~ 882 (1133)
T KOG1943|consen 842 PKLL---------DEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVH 882 (1133)
T ss_pred cccc---------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeec
Confidence 1111 1222333333 333 22233577777777776554
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=94.69 E-value=8.7 Score=49.58 Aligned_cols=111 Identities=12% Similarity=0.091 Sum_probs=76.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccCccc--------hhhhhcc----ccHHHHHhhhcCCChhhhHHHHHHHHHHh
Q 000145 435 KVLIGLITMATADVREYLILSLTKLCRREVGI--------WEAIGKR----EGIQLLISLLGLSSEQHQEYAVQLIAILT 502 (2054)
Q Consensus 435 ~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~--------r~~Ive~----ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs 502 (2054)
..|+.++.+ +++...++..+.-+..+.++. -+.+.+. ..+|.|++-.+..+...+..-..+|.++.
T Consensus 274 ~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll 351 (415)
T PF12460_consen 274 DKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLL 351 (415)
T ss_pred HHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHH
Confidence 445555554 566677777777666552211 1222222 35788888888888778999999999998
Q ss_pred hhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCC
Q 000145 503 EQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS 547 (2054)
Q Consensus 503 ~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~s 547 (2054)
.+-+..-..-.-...+|.|++-|..++.+++..+..+|..+..++
T Consensus 352 ~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 352 KNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 865533222222356788889998899999999999999998755
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.45 Score=64.01 Aligned_cols=165 Identities=21% Similarity=0.205 Sum_probs=115.0
Q ss_pred hccCChhHHHH-HHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHH
Q 000145 567 LKSGGPKGQDA-SAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ 644 (2054)
Q Consensus 567 LkS~~~evq~~-AA~AL~nLs~~~e-~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~ 644 (2054)
+.+.+...|.. .-.++..++...+ ....+.+++.....+.+++.-+---+-......++ . ..+ ++..+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~--~--~lL----avNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPE--L--ALL----AVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHH--H--HHH----HHHHHHh
Confidence 34444433333 3355566665544 33456677777777888777665555544432221 1 111 4666677
Q ss_pred HhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcC
Q 000145 645 VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEG 724 (2054)
Q Consensus 645 LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~g 724 (2054)
=++++|+.+|-.|.+.+..+-. ++.. .-+++++.+++.++++.||+.|+-|+.++-.- .+....+.|
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~--~el~-----~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l------d~~l~~~~g 166 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRV--KELL-----GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL------DKDLYHELG 166 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcCh--HHHH-----HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc------CHhhhhccc
Confidence 7788899999999999888743 2222 34578999999999999999999999999862 233456788
Q ss_pred ChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 725 DVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 725 aV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
.+..+..++.+.++.|..+|+.+|..+-
T Consensus 167 ~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 167 LIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 8999999999999999999999998874
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.2 Score=61.28 Aligned_cols=254 Identities=12% Similarity=0.079 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh------c-----hhhHHHH
Q 000145 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA------D-----SATINQL 597 (2054)
Q Consensus 529 s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~------e-----~~~Ip~L 597 (2054)
....|..|...|..|+..-++- ..+ ...+|-++.++.+..+++|..|..+|..+.... + .-..|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de-~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDE-VKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchH-HHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 5677888999999987743221 111 456889999999999999999999999886542 1 1245778
Q ss_pred HHHhcC-CCcchHHHHHHHHHHHHhhhcchHHHHhhhhcc------------------------cch-HHHHHHhccCCH
Q 000145 598 LALLLG-DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN------------------------KGL-RSLVQVLNSSNE 651 (2054)
Q Consensus 598 v~LL~~-~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~------------------------GaI-~~LV~LLks~s~ 651 (2054)
..|+.+ ....++..-+.+|+.|+.-...--.....+..+ ..+ +..+.++.++++
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 888888 555667666777777753221100000000000 011 223335555666
Q ss_pred HHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHh
Q 000145 652 ENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIK 731 (2054)
Q Consensus 652 evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~ 731 (2054)
-+|..-...+.-||..-.. +-.+.-++..|+.+|.+.+...|..--..+..++. .. +.|. ++...+|.|..
T Consensus 593 ~Vkr~Lle~i~~LC~FFGk---~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi--~V--G~rs--~seyllPLl~Q 663 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCVFFGK---EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSI--FV--GWRS--VSEYLLPLLQQ 663 (1431)
T ss_pred HHHHHHHHHHHHHHHHhhh---cccccchHHHHHHHhcCccHHHHHHHHhhccceEE--EE--eeee--HHHHHHHHHHH
Confidence 7777777777777652111 01122357889999999988877654433433332 11 2221 34556777788
Q ss_pred hhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 732 LAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 732 LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
-|.+..+.|...|+++|.-|....-.++..+. +.+.....+|-+.+.-+|+.++..+......
T Consensus 664 ~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 664 GLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred hccCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 89999999999999999988764444433222 2344444567778888999999988877664
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.046 Score=49.61 Aligned_cols=55 Identities=24% Similarity=0.233 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000145 651 EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2054)
Q Consensus 651 ~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nL 706 (2054)
+.+|..|+++|.+++...++.... ....+++.|+.+|+|.++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999988654444333 5568899999999999999999999999875
|
... |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.40 E-value=14 Score=50.44 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=104.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhC
Q 000145 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516 (2054)
Q Consensus 437 LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aG 516 (2054)
+++...+.+.++++-.=..|...+...++ ..+ -.++.+..=++++|+.+|..|+..++.+-.. .+. ..
T Consensus 60 ViK~~~trd~ElKrL~ylYl~~yak~~P~--~~l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~~------el~-~~ 127 (757)
T COG5096 60 VIKNVATRDVELKRLLYLYLERYAKLKPE--LAL---LAVNTIQKDLQDPNEEIRGFALRTLSLLRVK------ELL-GN 127 (757)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhccCHH--HHH---HHHHHHHhhccCCCHHHHHHHHHHHHhcChH------HHH-HH
Confidence 45555567788777777778777776442 122 2467777788899999999999998877541 111 23
Q ss_pred CCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 000145 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 517 aIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
.++++.++++++++.+|..|+-++.++=. ..+..+.+.|.+..+..++.+.+|.+..+|..+|..+-..
T Consensus 128 ~~~~ik~~l~d~~ayVRk~Aalav~kly~---ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 128 IIDPIKKLLTDPHAYVRKTAALAVAKLYR---LDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHh---cCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 67889999999999999999999999853 2245566788899999999999999999999999888544
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.083 Score=44.43 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=35.6
Q ss_pred hHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 000145 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2054)
Q Consensus 755 ~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~ 793 (2054)
++.+..+.+.|++++|++++.++++++++.|+++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 446778889999999999999999999999999999986
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.22 Score=63.07 Aligned_cols=170 Identities=11% Similarity=0.104 Sum_probs=131.6
Q ss_pred chHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH
Q 000145 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG 704 (2054)
Q Consensus 625 ~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~ 704 (2054)
+....+.++.+....+.|+++|..++..+.-.+...++|+.-.-...+..+.+.+++..|+.++.+.++..|.+..|.++
T Consensus 419 SV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlr 498 (743)
T COG5369 419 SVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLR 498 (743)
T ss_pred HHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhh
Confidence 34456677788889999999998766666667777888887655667778889999999999999999999999999999
Q ss_pred HhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHH-------HHhcC-cHHHHHHHHcC
Q 000145 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAE-------VLLED-VVSALTRVLAE 776 (2054)
Q Consensus 705 nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~-------Iv~~g-~I~~LV~LL~s 776 (2054)
++..+... ..+-.....-++..++++.++++..|+..+...|.|+.++..-.++ +.... ....|.+.+.+
T Consensus 499 Hlmyncq~--~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~ 576 (743)
T COG5369 499 HLMYNCQK--NEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEE 576 (743)
T ss_pred hhhhcCcc--hhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHh
Confidence 99874444 4555677777889999999999999999999999999874332111 11111 34566777888
Q ss_pred CCHHHHHHHHHHHHHhhhcC
Q 000145 777 GTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 777 ~~~evr~~Aa~AL~nL~~~~ 796 (2054)
.+|..-...+..|-+++...
T Consensus 577 ~np~~i~~~~yilv~~aa~d 596 (743)
T COG5369 577 NNPMEILEGCYILVRNAACD 596 (743)
T ss_pred cCchhhhhhHHHHHHHHhcc
Confidence 88877667788888887764
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.15 Score=52.72 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=60.0
Q ss_pred hhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh--cCCHHHHHHHHHHHHHHhcCChhHHHHHHHc
Q 000145 490 HQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE--AGSQKAREVAAHVLWILCCHSEDIRACVESA 557 (2054)
Q Consensus 490 Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~--s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~ 557 (2054)
.|...+..++||+..++.++..+.+.|++|.++.... ..+|-+|+||..+++||+.+++++++.|.+-
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3567788999999989999999999999999998764 4489999999999999999999999988753
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.92 E-value=2.6 Score=55.73 Aligned_cols=258 Identities=16% Similarity=0.135 Sum_probs=147.5
Q ss_pred CChHHHHHhhccC-ChhHHHHHHHHHHHHHHh-hchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc
Q 000145 558 GAVPAFLWLLKSG-GPKGQDASAMALTKLIRA-ADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA 635 (2054)
Q Consensus 558 GaI~aLV~LLkS~-~~evq~~AA~AL~nLs~~-~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~ 635 (2054)
+....|...|++. ++.++..++-.|+-..-. .+.+....+...|..++.-.-+.+.-++|.+.....+
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~---------- 482 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN---------- 482 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc----------
Confidence 3566777777764 456666666555433222 2345666777777766544334444444444322222
Q ss_pred ccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHH--HhhCCCCc
Q 000145 636 NKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALG--ALSRPTKT 712 (2054)
Q Consensus 636 ~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~--nLs~s~~~ 712 (2054)
..+++-+..+.... .+.+....+--++-...+.. +++=+-+.+++.+.+|-.|.....+++ ....++
T Consensus 483 ~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq--------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-- 552 (929)
T KOG2062|consen 483 QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ--------EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-- 552 (929)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh--------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc--
Confidence 22456666666543 44444443333333333222 244455567778888888876554443 332222
Q ss_pred ccchhHHHHhcCChhhHHhh-hhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHH
Q 000145 713 KTTNKMSYIAEGDVKPLIKL-AKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNASRAL 789 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv~L-L~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~-~~evr~~Aa~AL 789 (2054)
.++|+.|+.. ..+.+++||..|+.+|+.... +|+ .++..|.+|.+. ++.+|..|+.+|
T Consensus 553 ----------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~AL 613 (929)
T KOG2062|consen 553 ----------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMAL 613 (929)
T ss_pred ----------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHHH
Confidence 2367777776 567899999999999998875 454 456677777655 899999999999
Q ss_pred HHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc--ccCCCccCCcccccccCCCchHHHH
Q 000145 790 HQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLART--KQGLNFTYPPWAALAEVPSSIEPLV 867 (2054)
Q Consensus 790 ~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~--~~~~~~i~~~~~~~~~~~~~L~~Lv 867 (2054)
+--|...... .++. |++-+.. +...-++..|+-+++++--+ ...|.+.. +....+.
T Consensus 614 GIaCAGtG~~----------eAi~-lLepl~~-D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~----------~frk~l~ 671 (929)
T KOG2062|consen 614 GIACAGTGLK----------EAIN-LLEPLTS-DPVDFVRQGALIALAMIMIQQTEQLCPKVN----------GFRKQLE 671 (929)
T ss_pred hhhhcCCCcH----------HHHH-HHhhhhc-ChHHHHHHHHHHHHHHHHHhcccccCchHH----------HHHHHHH
Confidence 9888754211 1222 2222222 22234688899999987642 22233222 1234555
Q ss_pred HhhhcCChh
Q 000145 868 CCLAEGPPP 876 (2054)
Q Consensus 868 ~ll~~~~~~ 876 (2054)
....++|..
T Consensus 672 kvI~dKhEd 680 (929)
T KOG2062|consen 672 KVINDKHED 680 (929)
T ss_pred HHhhhhhhH
Confidence 566666666
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=93.90 E-value=27 Score=45.13 Aligned_cols=194 Identities=19% Similarity=0.230 Sum_probs=116.6
Q ss_pred hHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHh-ccCCHHHHHHHHHHHHHHhhcChh
Q 000145 593 TINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL-NSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 593 ~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LL-ks~s~evre~Aa~ALanLas~~~e 670 (2054)
.+..++++.. .+++..+..+.++++.+.+--...+... ..+..+..-. ...+...+..+..++..++.+ --
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~------~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~Ka-Lv 262 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD------EFLDSLLQSISSSEDSELRPQALEILIWITKA-LV 262 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH------HHHHHHHhhhcccCCcchhHHHHHHHHHHHHH-HH
Confidence 4555666654 3445667777777777764322222111 1233333333 333445555555555544431 11
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc------cc----hhHHHHhcCChhhHHhhhhcCCHHH
Q 000145 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK------TT----NKMSYIAEGDVKPLIKLAKTSSIDA 740 (2054)
Q Consensus 671 ~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~------d~----~r~~I~~~gaV~~Lv~LL~s~d~~V 740 (2054)
.|..-.....+..|+.++.+ +.+...+++++.-+....+.. .. .|+++.. ..++.|++..+..+.+.
T Consensus 263 ~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~-~~~p~L~~~~~~~~~~~ 339 (415)
T PF12460_consen 263 MRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT-QVLPKLLEGFKEADDEI 339 (415)
T ss_pred HcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH-HHHHHHHHHHhhcChhh
Confidence 11111223346777777766 667788999998887621110 01 1222332 37788888888877778
Q ss_pred HHHHHHHHHHhhCChHHHH-HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 741 AETAVAALANLLSDPDIAA-EVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 741 re~Al~AL~NLa~~~e~r~-~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+..-+.||.++..+-...- .-.-+..+|.|++.+.-.+++++..+..+|..+..+.
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 8889999999986432211 1112347888899999999999999999999999875
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.093 Score=54.20 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc--CCChhhhHHHHHHHHHHhhhccchhhHHHhh
Q 000145 449 REYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG--LSSEQHQEYAVQLIAILTEQVDDSKWAITAA 515 (2054)
Q Consensus 449 q~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~--s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~a 515 (2054)
+...+..+++++..++.++..+.+.||||.+++... ..+|-+++.|+.+++||+..+++++..|.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 456778999999999999999999999999999766 4477799999999999999989988877654
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.13 Score=43.18 Aligned_cols=39 Identities=38% Similarity=0.503 Sum_probs=35.7
Q ss_pred chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHh
Q 000145 115 EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVS 153 (2054)
Q Consensus 115 ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS 153 (2054)
++++..+.+.|+++.|+++|.+++++++..++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347778889999999999999989999999999999997
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.5 Score=58.64 Aligned_cols=235 Identities=16% Similarity=0.066 Sum_probs=155.9
Q ss_pred ccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHH-HHhhhccchhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHH
Q 000145 464 VGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA-ILTEQVDDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLW 541 (2054)
Q Consensus 464 ~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~-nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~ 541 (2054)
..-+...++.||...|.++.....+..+.....+|. .+... ..+ ....++++...+.+. ...-...+..++.
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~--~~~----~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP--GER----SYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC--CCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 455566778899999999998888888888888887 33321 111 124566666666544 2233556788999
Q ss_pred HHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc---------hhhHHHHHHHhcCCCcchHHHH
Q 000145 542 ILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---------SATINQLLALLLGDSPSSKAHV 612 (2054)
Q Consensus 542 nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---------~~~Ip~Lv~LL~~~~~~V~~~a 612 (2054)
||+..++..|..+....+++.+-.++-.+++..|..++..+.||..++. ....+.+...+...++......
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 9998888877778888888888788888899999999999999987742 1223444444444444444444
Q ss_pred HHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCC
Q 000145 613 IKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNT 692 (2054)
Q Consensus 613 ~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs 692 (2054)
+.++..+..... ...............++.++.+++++++........|+.....+....+.....+.-+...-.-..
T Consensus 648 a~a~a~I~sv~~--n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 648 AGALAAITSVVE--NHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred cccccchhhcch--hhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 444443322111 111112233445677888889999999999998888888777788888877777766665544444
Q ss_pred HHHHHHHHHHHHHh
Q 000145 693 QMVATQSARALGAL 706 (2054)
Q Consensus 693 ~~vr~~AA~AL~nL 706 (2054)
...++.++.+|...
T Consensus 726 a~~~~~~~~~l~~a 739 (748)
T KOG4151|consen 726 APKREDAAPCLSAA 739 (748)
T ss_pred hhhhhhhhhHHHHH
Confidence 45566666666543
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=93.23 E-value=13 Score=46.61 Aligned_cols=195 Identities=14% Similarity=0.122 Sum_probs=141.9
Q ss_pred hccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhh-HHHh--hCCCchHhhhhhcC--CHHHHHHHHHHHHHHhc
Q 000145 471 GKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW-AITA--AGGIPPLVQLLEAG--SQKAREVAAHVLWILCC 545 (2054)
Q Consensus 471 ve~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~-~I~~--aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~ 545 (2054)
...+.+..|+..+..-+.+.|..++....++-+...+.+. ..++ ..--|.++..|-.+ ++++--.+...|+....
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTT
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHh
Confidence 3446778888888888999999999999999887655554 1111 12325555555433 67777788888888887
Q ss_pred CChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----------hhhHHHHHHHhcCCCcchHHHHHH
Q 000145 546 HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----------SATINQLLALLLGDSPSSKAHVIK 614 (2054)
Q Consensus 546 ~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-----------~~~Ip~Lv~LL~~~~~~V~~~a~~ 614 (2054)
+ +...+.+.....+..++...+.++-++...|-.++..+..... ........+|+.+++--.+.++..
T Consensus 153 ~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 153 H-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp S-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred h-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 5 5555666678888889999999999998888888887654321 234567888999999999999999
Q ss_pred HHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000145 615 VLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 615 AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas 666 (2054)
-|+-+...........+-+....-+..++.+|++.+..+|..|..++--...
T Consensus 232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence 9999987766666666667777789999999999999999999988877665
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.78 E-value=1.9 Score=52.15 Aligned_cols=220 Identities=20% Similarity=0.118 Sum_probs=131.0
Q ss_pred hcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhcc--CChhHHHHHHHHHHHHHHhhc--------hhhHH
Q 000145 526 EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS--GGPKGQDASAMALTKLIRAAD--------SATIN 595 (2054)
Q Consensus 526 ~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS--~~~evq~~AA~AL~nLs~~~e--------~~~Ip 595 (2054)
.+-++-.+--|...|.++....+.......+...-..+++++++ +...+|++..-+++-++..+. ...+.
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~ 238 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIN 238 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33355577788888999887543333333455566778888876 557899999999998887643 12345
Q ss_pred HHHHHhcCCCcchHHHH-HHHHHHHHhhhc--chHHHHhhhhcccchHHHHHHh-ccC--CHHHHHHHHHHH--------
Q 000145 596 QLLALLLGDSPSSKAHV-IKVLGHVLTMAL--QEDLVQKGSAANKGLRSLVQVL-NSS--NEENQEYAASVL-------- 661 (2054)
Q Consensus 596 ~Lv~LL~~~~~~V~~~a-~~AL~~La~~~~--~~d~~~~~l~~~GaI~~LV~LL-ks~--s~evre~Aa~AL-------- 661 (2054)
-|+++.+.. .++.+ .-|++.++...+ +++........++ +.+-++.+ +.. +++++...-..=
T Consensus 239 dli~iVk~~---~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~-~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k 314 (432)
T COG5231 239 DLIAIVKER---AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND-ISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK 314 (432)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhcccccchhhhhHhhcc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence 556666543 22222 224444443322 2333333333333 34444444 332 554443222211
Q ss_pred ---------HHHhhc----Chh---------hhhhhhhC--CCHHHHHHHhccCCHH-HHHHHHHHHHHhhCCCCcccch
Q 000145 662 ---------ADLFSM----RQD---------ICGSLATD--EIVNPCMRLLTSNTQM-VATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 662 ---------anLas~----~~e---------~r~~Iv~~--g~V~~Lv~LL~dgs~~-vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
..|-++ +|. +...+.+. .+++.|.++++.+++. .-.-|+.-+..+.+..| +.
T Consensus 315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P---E~ 391 (432)
T COG5231 315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP---EI 391 (432)
T ss_pred hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc---hH
Confidence 111111 111 11222222 5688889999887775 33346677777776555 46
Q ss_pred hHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
+..+...|+=..+.+++++++++|+-+|+.++..+.
T Consensus 392 ~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 392 NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 777888999999999999999999999999988664
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.54 E-value=74 Score=46.25 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=68.1
Q ss_pred ChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHH
Q 000145 217 GVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKA 296 (2054)
Q Consensus 217 GI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~ 296 (2054)
.+..++..|+.+...+|..|+++|..+...++.... ....-..+-.-+. ++...||+.|.+.++......++...+
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~-DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLN-DSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhc-cchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 466777888888899999999999999966543221 1112222222222 467789999999998665544555555
Q ss_pred HHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCch
Q 000145 297 VVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMP 342 (2054)
Q Consensus 297 I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis 342 (2054)
++ +.+++-+.++... ++.+++..+..+|...|
T Consensus 893 yY-----~~i~erIlDtgvs---------VRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 893 YY-----DQIIERILDTGVS---------VRKRVIKILRDICEETP 924 (1692)
T ss_pred HH-----HHHHhhcCCCchh---------HHHHHHHHHHHHHHhCC
Confidence 54 3344434443322 77788888888875433
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.49 E-value=2.2 Score=59.08 Aligned_cols=282 Identities=13% Similarity=0.053 Sum_probs=170.8
Q ss_pred CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhc---cchhhHHHhhCCCch
Q 000145 444 ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV---DDSKWAITAAGGIPP 520 (2054)
Q Consensus 444 sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s---~e~r~~I~~aGaIp~ 520 (2054)
...+.+..|...|..++....+ -..+ ...+|-++.++.++...||..|+.+|+.+.... +..-..|.-.=.+|.
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~d-e~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDD-EVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcch-HHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 3467788888999988875221 1112 356899999999999999999999998875422 223334444446788
Q ss_pred Hhhhhhc-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh----hHHHH-HHHHHHHHHHhhchhhH
Q 000145 521 LVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP----KGQDA-SAMALTKLIRAADSATI 594 (2054)
Q Consensus 521 LV~LL~s-~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~----evq~~-AA~AL~nLs~~~e~~~I 594 (2054)
|-.++.+ ....+|..=|..|..|+...-..-+... -.....++.+.+. +.++. -..+|... +-
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q----~~~~~g~~n~~nset~~~~~~~~~~~~L~~~-------V~ 580 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQ----ELRQAGMLNDPNSETAPEQNYNTELQALHHT-------VE 580 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHH----HHHhcccccCcccccccccccchHHHHHHHH-------HH
Confidence 8888887 4556677777777777642111111000 0000112222221 11111 11111111 12
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhh
Q 000145 595 NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGS 674 (2054)
Q Consensus 595 p~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~ 674 (2054)
.....||.+.++-|+....+.++-|+..-.. .-...=.++.|+.+|++.++..|-.=..-+..++-. .-..
T Consensus 581 ~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk------~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~---VG~r 651 (1431)
T KOG1240|consen 581 QMVSSLLSDSPPIVKRALLESIIPLCVFFGK------EKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF---VGWR 651 (1431)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhhh------cccccchHHHHHHHhcCccHHHHHHHHhhccceEEE---Eeee
Confidence 3356677777778888888888877654211 101122478899999999888886544444433321 0011
Q ss_pred hhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 675 LATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 675 Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
-+++..+|-|.+-|.|+.+.|...|.++|.-|.... ..+. ..-.+.++...-+|..++..+|..+++.+...+.
T Consensus 652 s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~----ll~K-~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 652 SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG----LLRK-PAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc----ccch-HHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 145677888888899999999999999999988621 1111 1112245555667778899999999999987753
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.3 Score=49.49 Aligned_cols=118 Identities=16% Similarity=0.226 Sum_probs=96.2
Q ss_pred hhhccccHHHHHhhhcCCCh------hhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHH
Q 000145 469 AIGKREGIQLLISLLGLSSE------QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVL 540 (2054)
Q Consensus 469 ~Ive~ggIp~LV~LL~s~d~------~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL 540 (2054)
.++..+|+..|+++++++.. .+...++.++..|..| ....|.......+...+...+.. +..+...|...|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 45677999999999998774 5677889999999886 34455666666777888877655 689999999999
Q ss_pred HHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000145 541 WILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 541 ~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~ 587 (2054)
-++..+++.....+.+.=.++.|+..++.+++++|.++...+-.|..
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999888888888888899999999999999999888776665543
|
|
| >KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.10 E-value=18 Score=42.91 Aligned_cols=141 Identities=16% Similarity=0.119 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-----CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCc
Q 000145 98 PLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-----ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGV 172 (2054)
Q Consensus 98 ~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-----ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~ 172 (2054)
+--..++..+|..++..++.|..+..+..--.+-.+|.. ..+-.|..+++.+..|...+ +...-..+...++
T Consensus 93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~d---d~eVi~fLl~TeI 169 (293)
T KOG3036|consen 93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKND---DQEVIRFLLTTEI 169 (293)
T ss_pred cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcC---cHHHHHHHHHhhh
Confidence 344567888888899999999999988665555566643 36778999999999999854 3445667788899
Q ss_pred HHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHH------HHhh-CChHHHH-hhhccCCHHHHHHHHHHHHHHH
Q 000145 173 VPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRA------TLEA-GGVDIIV-GLLSSDNAAAQSNAASLLARLM 244 (2054)
Q Consensus 173 Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~a------I~ea-GGI~~LV-~LL~s~s~evq~~A~~aL~nLs 244 (2054)
||..++.+..++. .-..-|+.++..+-.++.|-.-. +..- -.+..++ .+.+.++...-.+++++..+|+
T Consensus 170 VPlCLrime~GSe---lSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs 246 (293)
T KOG3036|consen 170 VPLCLRIMESGSE---LSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS 246 (293)
T ss_pred HHHHHHHHhcccH---HHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence 9999999998872 23445777888877776542110 1000 0111222 2233455666677777777776
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=91.85 E-value=0.61 Score=47.97 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHH--hcCcHHHHHHH
Q 000145 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVL--LEDVVSALTRV 773 (2054)
Q Consensus 696 r~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv--~~g~I~~LV~L 773 (2054)
|..+..+|...+.+.+. . ..-.-...++|++..+.+.+..||..|+.+|.|++.. .+..+. -......|.++
T Consensus 3 R~ggli~Laa~ai~l~~--~--~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~--~~~~~l~~f~~IF~~L~kl 76 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGK--D--ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKV--ARGEILPYFNEIFDALCKL 76 (97)
T ss_pred hhHHHHHHHHHHHHchH--h--HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 44556666666553332 1 2223345899999999999999999999999999742 223332 34577888889
Q ss_pred HcCCCHHHHHHHHHHHHHhhh
Q 000145 774 LAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 774 L~s~~~evr~~Aa~AL~nL~~ 794 (2054)
+.+.++.+|..| +.|-++..
T Consensus 77 ~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 77 SADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred HcCCchhHHHHH-HHHHHHhc
Confidence 999999998755 77776654
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.74 E-value=31 Score=46.48 Aligned_cols=346 Identities=17% Similarity=0.220 Sum_probs=184.6
Q ss_pred hhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCh
Q 000145 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2054)
Q Consensus 481 ~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI 560 (2054)
.=|+++|+-+|-..++.||.|-. ++ +. ..-+|.+...|++...-+|++|.-++..+=...+. ++ .+ .
T Consensus 106 kDLQHPNEyiRG~TLRFLckLkE--~E----Ll-epl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~--pD-a 172 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLKE--PE----LL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LI--PD-A 172 (948)
T ss_pred hhccCchHhhcchhhhhhhhcCc--HH----Hh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hc--CC-h
Confidence 34567788888888888887744 22 11 13566677788888999999999888877443111 11 22 3
Q ss_pred HHHH-H-hhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhc---CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc
Q 000145 561 PAFL-W-LLKSGGPKGQDASAMALTKLIRAADSATINQLLALLL---GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA 635 (2054)
Q Consensus 561 ~aLV-~-LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~---~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~ 635 (2054)
|-|+ . +....+|..+++|-..|...- ...++.-|..-.. +=++..+....+-+...++- . .. .+
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~D---~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~--~-p~-----~~ 241 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTTD---PERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA--N-PA-----EK 241 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhcC---HHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc--C-HH-----Hh
Confidence 3344 2 556678888888766555442 1222222222111 11122222233333332221 1 11 12
Q ss_pred ccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCccc
Q 000145 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN-TQMVATQSARALGALSRPTKTKT 714 (2054)
Q Consensus 636 ~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg-s~~vr~~AA~AL~nLs~s~~~~d 714 (2054)
...++.+..+|.++++.++..|+..|..++. ++..... +...+++++.+. +-.++..-..-|..+..
T Consensus 242 ~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~------ 309 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKA------ 309 (948)
T ss_pred hHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhh------
Confidence 3468899999999999999999999888876 3322221 124445554332 22233222222222221
Q ss_pred chhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH-HH------cCCCHHHHHHHHH
Q 000145 715 TNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTR-VL------AEGTSEGKKNASR 787 (2054)
Q Consensus 715 ~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~-LL------~s~~~evr~~Aa~ 787 (2054)
..+. +-.|.+--++..|.+.|-+++..++.....|+.+...- . .+..|-. ++ .+++.+-|+.-++
T Consensus 310 ~~~~--il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNve-d-----iv~~Lkke~~kT~~~e~d~~~~yRqlLik 381 (948)
T KOG1058|consen 310 LHEK--ILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVE-D-----IVQFLKKEVMKTHNEESDDNGKYRQLLIK 381 (948)
T ss_pred hhHH--HHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHH-H-----HHHHHHHHHHhccccccccchHHHHHHHH
Confidence 1111 11234445667778888888888888777776532211 1 1111111 11 2234566888889
Q ss_pred HHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHH
Q 000145 788 ALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLV 867 (2054)
Q Consensus 788 AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv 867 (2054)
+++..+.+.|. +. ...++-|++.+.+.+ ...|...|..+..--......+ ..-++.++
T Consensus 382 tih~cav~Fp~---~a-----atvV~~ll~fisD~N-----~~aas~vl~FvrE~iek~p~Lr---------~~ii~~l~ 439 (948)
T KOG1058|consen 382 TIHACAVKFPE---VA-----ATVVSLLLDFISDSN-----EAAASDVLMFVREAIEKFPNLR---------ASIIEKLL 439 (948)
T ss_pred HHHHHhhcChH---HH-----HHHHHHHHHHhccCC-----HHHHHHHHHHHHHHHHhCchHH---------HHHHHHHH
Confidence 99888887642 22 457788888885433 2345566666553111111111 00122222
Q ss_pred Hhh-hcCChhHHHHHHHHHHHhhccC
Q 000145 868 CCL-AEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 868 ~ll-~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
..+ .-.+..+..+|+-+++.+|...
T Consensus 440 ~~~~~irS~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 440 ETFPQIRSSKICRGALWILGEYCEGL 465 (948)
T ss_pred HhhhhhcccccchhHHHHHHHHHhhh
Confidence 222 2344456778888888888754
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=91.42 E-value=6.5 Score=48.80 Aligned_cols=153 Identities=22% Similarity=0.243 Sum_probs=89.9
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhc--ChhhhhhhhhCCCHHHHHHHhccCCH--HHHHHHHHHHHHhhC-CCCc
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSM--RQDICGSLATDEIVNPCMRLLTSNTQ--MVATQSARALGALSR-PTKT 712 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~--~~e~r~~Iv~~g~V~~Lv~LL~dgs~--~vr~~AA~AL~nLs~-s~~~ 712 (2054)
.+..+...++.++.+-+..|+.++.-++-. ..+....+.+ ...+.|.+.+.+++. ..|..++.||+-++. +...
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d 165 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD 165 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 466777778887766667777776666542 2233333333 567888888887654 455666777776654 1111
Q ss_pred ccchhHHHHhcCChhhHH--hhhhc----------CCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCH
Q 000145 713 KTTNKMSYIAEGDVKPLI--KLAKT----------SSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTS 779 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv--~LL~s----------~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~ 779 (2054)
.+.....+ ..+..+. ...+. +++.+...|+.+-+.|.. -|...-.-.-+..++.|+.+|.+.+.
T Consensus 166 ~~~~~~~~---~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~ 242 (309)
T PF05004_consen 166 EEETEELM---ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDV 242 (309)
T ss_pred hhHHHHHH---HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 01111000 0111111 11111 235677777777777765 23322122234579999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 000145 780 EGKKNASRALHQLLK 794 (2054)
Q Consensus 780 evr~~Aa~AL~nL~~ 794 (2054)
.+|.+|.++|+=|..
T Consensus 243 ~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 243 DVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987754
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.58 E-value=10 Score=48.51 Aligned_cols=192 Identities=13% Similarity=0.074 Sum_probs=115.4
Q ss_pred chhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc-HHHHHHHhhhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhc
Q 000145 35 ESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAK-KEARLLIGSHAQAMPLFISILRS-GTPLAKVNVAATLSVLC 112 (2054)
Q Consensus 35 ~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~-d~ar~~I~~~aGgVp~LV~LLks-~s~evr~~AA~vL~~Ls 112 (2054)
......|.+++..++++. ..+++..|+..|..+..+. -.-+..-.. ..+..+++.|.+ .++..+..|.++|..++
T Consensus 282 ~~~~~~v~~~l~~~~g~e-~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml 358 (516)
T KOG2956|consen 282 VDQSALVADLLKEISGSE-RASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREML 358 (516)
T ss_pred cchhHHHHHHHHhccCcc-chhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHH
Confidence 344577888888887763 3466788888888876554 233332221 346778888888 78889999999999998
Q ss_pred cCchhHHHHHhcCChHHHHHhhccCCHHHHHHHH-HHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHH
Q 000145 113 KDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAA-EALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQ 191 (2054)
Q Consensus 113 ~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa-~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~ 191 (2054)
.....|..=--.-+|..+++.-.+...++...|. .++..++++ .+. . .|..+..++... +....
T Consensus 359 ~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~----~P~--~------~I~~i~~~Ilt~---D~~~~ 423 (516)
T KOG2956|consen 359 TNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH----LPL--Q------CIVNISPLILTA---DEPRA 423 (516)
T ss_pred HhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh----Cch--h------HHHHHhhHHhcC---cchHH
Confidence 7654432211224556666666664444444444 556666653 221 1 122223333221 11233
Q ss_pred HHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHH
Q 000145 192 GFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244 (2054)
Q Consensus 192 e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs 244 (2054)
..++..+..++..-..-.-.-.-....|.+++...+.+..+|..|+.+|-.|.
T Consensus 424 ~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 424 VAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 35566666666643222111222346788888888999999999999887776
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.47 E-value=1.2e+02 Score=44.46 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=87.9
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChh
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~ 162 (2054)
.+.+..++..|..+...+|..|.++|..+..-+..-. .....-..+..=+.+.+..||++|+..++...-. .+.
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~----~~e 888 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS----IPE 888 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc----cHH
Confidence 4678888889998899999999999988854322100 0001111222334456888999999999865532 111
Q ss_pred HHHHHHHcCcHHHHHHhhCCC-CCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhc---cCCHHHHHHHHH
Q 000145 163 GMKIFVTEGVVPTLWDQLNPK-NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLS---SDNAAAQSNAAS 238 (2054)
Q Consensus 163 ~re~Iv~aG~Vp~Lv~LL~s~-s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~---s~s~evq~~A~~ 238 (2054)
.++...+.+... ...+..|+..++++++.+|...+..-. -++..++++. +....++.-+..
T Consensus 889 ---------~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~DEEg~I~kLv~e 953 (1692)
T KOG1020|consen 889 ---------LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVNDEEGNIKKLVRE 953 (1692)
T ss_pred ---------HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhccchhHHHHHHHH
Confidence 233333333211 223467999999999999998876522 1233334443 333458888998
Q ss_pred HHHHHHh
Q 000145 239 LLARLML 245 (2054)
Q Consensus 239 aL~nLs~ 245 (2054)
++.++=.
T Consensus 954 tf~klWF 960 (1692)
T KOG1020|consen 954 TFLKLWF 960 (1692)
T ss_pred HHHHHhc
Confidence 8888764
|
|
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.26 Score=50.88 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=33.4
Q ss_pred eEEEEEcCCcchhh--cCCCccceEeeccCCCCcccceeee
Q 000145 2012 LTVTIKRGNNLKQT--MGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|+|+|+++.||+.. .|.++.||++++|+ ..++|+|+.+
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~v~~~ 41 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK-TTQKSKVKER 41 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC-EEEeCccccC
Confidence 89999999999764 57899999999997 8899998864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] | Back alignment and domain information |
|---|
Probab=89.19 E-value=13 Score=47.36 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHhhcH---HHHHHHhhhcCcHHHHHHHHccC-------CHHHHHHHHHHHHHhccCchhHHHHHhc
Q 000145 55 PQERELITMRILTIAKAKK---EARLLIGSHAQAMPLFISILRSG-------TPLAKVNVAATLSVLCKDEDLRLKVLLG 124 (2054)
Q Consensus 55 ~~ere~AL~~L~~La~~~d---~ar~~I~~~aGgVp~LV~LLks~-------s~evr~~AA~vL~~Ls~~ee~r~~v~~~ 124 (2054)
.++|..|+--..+++++.| .+|+.+.+ +-|.+-+-++|+++ +...+.-+..+|.-+|.+++....---.
T Consensus 25 D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v 103 (698)
T KOG2611|consen 25 DEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV 103 (698)
T ss_pred hHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH
Confidence 4668888888888888765 57778888 77889999999874 3346677888888899887643222222
Q ss_pred CChHHHHHhhcc-CCHH------HHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCC
Q 000145 125 GCIPPLLSLLKS-ESTD------TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183 (2054)
Q Consensus 125 GaIp~LV~LL~s-ed~e------Vr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~ 183 (2054)
..||.|+.++.. .|++ +.+.|-.+|..++. .+.|...++..|+++.+-++-..+
T Consensus 104 ~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~-----~e~G~~~Lia~G~~~~~~Q~y~~~ 164 (698)
T KOG2611|consen 104 SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVAT-----AEAGLMTLIASGGLRVIAQMYELP 164 (698)
T ss_pred HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhc-----CCchhHHHHhcCchHHHHHHHhCC
Confidence 678999999976 3444 78899999999997 456889999999999999765543
|
|
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=89.00 E-value=8 Score=44.01 Aligned_cols=93 Identities=15% Similarity=0.139 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhH
Q 000145 650 NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPL 729 (2054)
Q Consensus 650 s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~L 729 (2054)
++.+|.+++.+++.|+...+... +..++.+...|+|+++.+|+.|..+|.+|...... ..+ ...+..+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i--k~k-----~~l~~~~ 68 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI--KVK-----GQLFSRI 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce--eeh-----hhhhHHH
Confidence 57889999999999987443322 23478889999999999999999999999863222 222 2234778
Q ss_pred HhhhhcCCHHHHHHHHHHHHHhhCC
Q 000145 730 IKLAKTSSIDAAETAVAALANLLSD 754 (2054)
Q Consensus 730 v~LL~s~d~~Vre~Al~AL~NLa~~ 754 (2054)
+.++.+++++++..|...+..+...
T Consensus 69 l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 69 LKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999988753
|
|
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=88.64 E-value=0.38 Score=50.59 Aligned_cols=41 Identities=37% Similarity=0.513 Sum_probs=35.2
Q ss_pred CceEEEEEcCCcchh-hc--CCCccceEeeccC-CCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQ-TM--GTTNAFCRLTIGN-GPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~-~~~~~~~~~~~ 2050 (2054)
|.|+|+|.+++||+. .. |.++.||++.+|+ .+..+|+++.+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~ 46 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD 46 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecC
Confidence 889999999999984 32 4589999999999 59999999854
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.35 Score=50.42 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=35.6
Q ss_pred ceEEEEEcCCcchhhcCCCccceEeeccCCCCcccceeee
Q 000145 2011 CLTVTIKRGNNLKQTMGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
+|+|+|.++.||+.. |..+.||++.+|+.++++|+++.+
T Consensus 1 ~L~v~vi~a~~l~~~-~~~dpyv~v~~~~~~~~kT~~~~~ 39 (117)
T cd08383 1 SLRLRILEAKNLPSK-GTRDPYCTVSLDQVEVARTKTVEK 39 (117)
T ss_pred CeEEEEEEecCCCcC-CCCCceEEEEECCEEeEecceEEC
Confidence 489999999999988 999999999999888899999864
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=88.43 E-value=1.9 Score=48.21 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=80.9
Q ss_pred hHHHHHHHHcCCCChhhHHHHHHHHHHHhh-cChhhhHHHhhc-chHHHHHHHhc--cCCHHHHHHHHHHHHHhcccCcc
Q 000145 390 QIEDILVMLLKPHDNKLVQERVLEAMASLY-GNIFLSQWVSHA-EAKKVLIGLIT--MATADVREYLILSLTKLCRREVG 465 (2054)
Q Consensus 390 gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~-~n~~~~~~L~~~-g~I~~LI~LL~--ssd~evq~~Aa~AL~~Ls~~s~e 465 (2054)
.+.+++..++...+.+ -...+..++..++ ..+++...+... |..+.++.++. ..+..++..++..|..-|.+ ..
T Consensus 43 ~~~~~i~~~~~~~~~d-~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~ 120 (157)
T PF11701_consen 43 KISDFIESLLDEGEMD-SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KS 120 (157)
T ss_dssp HHHHHHHHHHCCHHCC-HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHccccch-hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HH
Confidence 3446666666665444 5678888888884 567888877655 56788999998 78888999999999888877 45
Q ss_pred chhhhhccccHHHHHhhhc-CCChh-hhHHHHHHHHHH
Q 000145 466 IWEAIGKREGIQLLISLLG-LSSEQ-HQEYAVQLIAIL 501 (2054)
Q Consensus 466 ~r~~Ive~ggIp~LV~LL~-s~d~~-Vr~~Aa~aL~nL 501 (2054)
.|..|. ..|++.|.++++ ++++. +|..|+.+|++|
T Consensus 121 ~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 121 CRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 566664 589999999996 55566 899999988764
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=88.13 E-value=23 Score=40.37 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc----hhhHHHHHHHhcCC
Q 000145 529 SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----SATINQLLALLLGD 604 (2054)
Q Consensus 529 s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e----~~~Ip~Lv~LL~~~ 604 (2054)
++.+|.++..+++.|+..-+.. + ...++.+...|+++++.+|+.|..+|.+|...+- ...+..+..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~---v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNL---V--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE 75 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHH---H--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC
Confidence 4788999999999998643321 1 3457888899999999999999999999987632 22347788888999
Q ss_pred CcchHHHHHHHHHHHHhh
Q 000145 605 SPSSKAHVIKVLGHVLTM 622 (2054)
Q Consensus 605 ~~~V~~~a~~AL~~La~~ 622 (2054)
+++|+..+..++..+...
T Consensus 76 ~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKK 93 (178)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999988888877644
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.12 E-value=11 Score=45.99 Aligned_cols=260 Identities=16% Similarity=0.089 Sum_probs=146.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccc-cHHHHHhhhcCC--ChhhhHHHHHHHHHHhhhccchhhH
Q 000145 435 KVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKRE-GIQLLISLLGLS--SEQHQEYAVQLIAILTEQVDDSKWA 511 (2054)
Q Consensus 435 ~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~g-gIp~LV~LL~s~--d~~Vr~~Aa~aL~nLs~~s~e~r~~ 511 (2054)
++|-.+++.-+.-++..|++.+.++... ++.|..+-..+ .-..++.++++. +.+.|-+.+-+++.++. +++....
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqd 229 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQD 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHH
Confidence 3444555555566788888999988877 55555443322 334566666643 56788899999999988 3443322
Q ss_pred HHh-hCCCchHhhhhhcC-CHHHHHHHHHHHHHHhcCC--hhHHHHHHHcCChHHHHHhhcc---CChhHHHHHHHHHHH
Q 000145 512 ITA-AGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHS--EDIRACVESAGAVPAFLWLLKS---GGPKGQDASAMALTK 584 (2054)
Q Consensus 512 I~~-aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa~~s--d~~r~~I~e~GaI~aLV~LLkS---~~~evq~~AA~AL~n 584 (2054)
+-+ ..-+.-|+++.+.. ..++-+-+++++.|+.... +.+...+. .|-+.+-++.|.. .+++++...-..=..
T Consensus 230 i~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~ 308 (432)
T COG5231 230 IDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSR 308 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 222 24456666777665 6778888899999987633 33444443 3333344444432 233333221111111
Q ss_pred HHHhhc-hhhH-HHHHHH----hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHH-HHHHH
Q 000145 585 LIRAAD-SATI-NQLLAL----LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEE-NQEYA 657 (2054)
Q Consensus 585 Ls~~~e-~~~I-p~Lv~L----L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~e-vre~A 657 (2054)
+-+... -... .-+.++ +....+++...- - ...-+...+ ..-..++.|.+++++.++. .-..|
T Consensus 309 l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dF-------W--s~N~d~l~k--dny~i~k~L~~~lq~n~~nt~i~vA 377 (432)
T COG5231 309 LVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDF-------W--STNLDMLIK--DNYEIVKVLKKYLQSNNPNTWICVA 377 (432)
T ss_pred HHhhhhhhhHHHHHHHHHhhCcccCCCcccccCc-------h--hhhHHHHhh--hhHHHHHHHHHHHhcCCCCceEeee
Confidence 111100 0001 011111 111111211100 0 000000000 0112478889999887666 33445
Q ss_pred HHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 658 ASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 658 a~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+.=+..+....|+.+..+.+.|+=..++.++.+.++++|-+|..|+..+..
T Consensus 378 c~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 378 CSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 555666666689999999999999999999999999999999999877653
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=87.67 E-value=12 Score=46.20 Aligned_cols=169 Identities=20% Similarity=0.223 Sum_probs=106.7
Q ss_pred cHHHHH-hhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcC-Chh-HH
Q 000145 475 GIQLLI-SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH-SED-IR 551 (2054)
Q Consensus 475 gIp~LV-~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~-sd~-~r 551 (2054)
.+..|+ ..+++.+..+|+.|+.+|+-.+-.+.+. ....++.+...++.+++.++..|..++..+... ... ..
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~-----a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL-----AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344444 5778889999999999999988754322 123466677778778999999999999988541 111 11
Q ss_pred HH------HHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh---c-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHh
Q 000145 552 AC------VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA---D-SATINQLLALLLGDSPSSKAHVIKVLGHVLT 621 (2054)
Q Consensus 552 ~~------I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~---e-~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~ 621 (2054)
.. ......+..+...+.+.+++++..++..++.|.... + ..++..|+-+.-+....-......+|+.+..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp 181 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFP 181 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHH
Confidence 11 112345566678888999999999999999998763 2 3455555444433322223356778887764
Q ss_pred h-hcchHHHHhhhhcccchHHHHHHhccC
Q 000145 622 M-ALQEDLVQKGSAANKGLRSLVQVLNSS 649 (2054)
Q Consensus 622 ~-~~~~d~~~~~l~~~GaI~~LV~LLks~ 649 (2054)
. .......+. .....+++.+-.+.+..
T Consensus 182 ~y~~s~~~~Q~-~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 182 VYASSSPENQE-RLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHcCCHHHHH-HHHHHHHHHHHHHHhCc
Confidence 3 222222222 23455667766666543
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=87.56 E-value=3.9 Score=49.12 Aligned_cols=98 Identities=21% Similarity=0.181 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHc-cCCHHHHHHHHHHHHH-hccCchhHHHHHhcCChHHHHHh
Q 000145 56 QERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR-SGTPLAKVNVAATLSV-LCKDEDLRLKVLLGGCIPPLLSL 133 (2054)
Q Consensus 56 ~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLk-s~s~evr~~AA~vL~~-Ls~~ee~r~~v~~~GaIp~LV~L 133 (2054)
.....|++.|.-++.-++..|..+.+ ..++..++.+|. +..+.++..+..+|.. |...+.+...+-+.+|+..++++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 34566889999999999999999988 789999999994 4678999999999955 45667888888888999999999
Q ss_pred hcc--CCHHHHHHHHHHHHHHhc
Q 000145 134 LKS--ESTDTRKAAAEALYEVSS 154 (2054)
Q Consensus 134 L~s--ed~eVr~aAa~AL~nLS~ 154 (2054)
+++ -+.++|-.+...|+-...
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HccccccHHHhHHHHHHHHHHHc
Confidence 998 388899999999877665
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG1788 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.26 E-value=1.5e+02 Score=41.50 Aligned_cols=405 Identities=18% Similarity=0.162 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChH-----HH
Q 000145 56 QERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIP-----PL 130 (2054)
Q Consensus 56 ~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp-----~L 130 (2054)
+.+...+..+..+-..++++-++..+ .--||.++.-+..-...+|.....+|-.- +....+|| .|
T Consensus 482 dlqaeVlnrmfkIftshpeNYricqe-lytvpllvlnmegfPsslqvkiLkilEyA---------VtvvncvPeqELlSL 551 (2799)
T KOG1788|consen 482 DLQAEVLNRMFKIFTSHPENYRICQE-LYTVPLLVLNMEGFPSSLQVKILKILEYA---------VTVVNCVPEQELLSL 551 (2799)
T ss_pred chhhHHHHHHHHHhccChHHhhHHhh-ccccchhhhhhcCCChHHHHHHHHHHHHH---------HhhhccCcHHHHHHH
Confidence 34667788888888777777666655 67899999888777777777777666221 01112222 33
Q ss_pred HHhhccC-CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCC--------------------------
Q 000145 131 LSLLKSE-STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK-------------------------- 183 (2054)
Q Consensus 131 V~LL~se-d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~-------------------------- 183 (2054)
.-+|..+ +......-......|.. -+...++.+.+-|.+..|...++..
T Consensus 552 CvLLqqpIssalkhtIlsffvKLIs----fDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehydrnpss~sf~ 627 (2799)
T KOG1788|consen 552 CVLLQQPISSALKHTILSFFVKLIS----FDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHYDRNPSSPSFK 627 (2799)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHhh----HHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHhhcCCCCchhh
Confidence 3444443 22233333333333333 1455677777777777776665441
Q ss_pred -------------------CCCChhHHH------HHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHH
Q 000145 184 -------------------NKQDNVVQG------FVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAAS 238 (2054)
Q Consensus 184 -------------------s~~d~~V~e------~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~ 238 (2054)
+... .+.+ ....+|..+.+++..++..+.++.|+..++.++ .+++-+...++
T Consensus 628 ~~ld~~daiisspklmeSgsgkl-plfevlltitvgwDcLisllKnnteNqklFreanGvklilpfl--indehRSslLr 704 (2799)
T KOG1788|consen 628 QHLDSQDAIISSPKLMESGSGKL-PLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLR 704 (2799)
T ss_pred hccccccceeecchhhcccCCcc-chhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHH
Confidence 0000 0111 125678888888888889999999999999888 55678888888
Q ss_pred HHHHHHhhcCCCcchhcccchHHHHHHHhccC-------CChh----HHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHH
Q 000145 239 LLARLMLAFGDSIPTVIDSGAVKALVQLVGQN-------NDIS----VRASAADALEALSSKSIKAKKAVVAADGVPVLI 307 (2054)
Q Consensus 239 aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~-------~d~~----Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LI 307 (2054)
++.+|...++.. .+..-+..++..|+++ ...+ ......++++.+-.-|...|..+.+++|...|.
T Consensus 705 ivscLitvdpkq----vhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLl 780 (2799)
T KOG1788|consen 705 IVSCLITVDPKQ----VHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLL 780 (2799)
T ss_pred HHHHHhccCccc----ccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHH
Confidence 888887554431 1223445556655531 1111 122334455555544567888999999999988
Q ss_pred HhhcC--CchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCc-----hhhHHHHHHHHHHHHHHhhcCCC
Q 000145 308 GAIVA--PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL-----AAPVADIIGALAYALMVFEQKSG 380 (2054)
Q Consensus 308 eLL~s--~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~-----~~~iA~~LgaL~~~~~~l~~~~~ 380 (2054)
..+.. ...+.+.. + .+ .....+-++- -.++. +.- ..++.. +.-+-+.+..+......
T Consensus 781 ttLhtfqgftelhde-s---Dl-cvyiklfkil---FrlfT-lav-cenasNrmklhtvITsqtftsLLresgl------ 844 (2799)
T KOG1788|consen 781 TTLHTFQGFTELHDE-S---DL-CVYIKLFKIL---FRLFT-LAV-CENASNRMKLHTVITSQTFTSLLRESGL------ 844 (2799)
T ss_pred HHHHHhccchhcCCc-h---hh-hhHHHHHHHH---HHHHH-HHH-hhcchhhhheeeeeeHHHHHHHHHHhcc------
Confidence 76643 11111110 0 00 0000000000 00000 000 001110 11111111111110000
Q ss_pred CCCcccchhhHHHHH----HHHcCCCChhhHHHHHHHH-HHHhhcC----------h-hhhHHHhhcchHHHHHHHhccC
Q 000145 381 VDDEPFDARQIEDIL----VMLLKPHDNKLVQERVLEA-MASLYGN----------I-FLSQWVSHAEAKKVLIGLITMA 444 (2054)
Q Consensus 381 ~~~~~~~~~gIe~~L----v~LLk~~~~e~Vq~~Aa~A-L~~L~~n----------~-~~~~~L~~~g~I~~LI~LL~ss 444 (2054)
....... .++..| ...+.+++ ...+.++.+ +-.+-.+ + ...+.+...++++.++..+-..
T Consensus 845 -lcvnler-~viqlllElalevlvppf--LtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLln 920 (2799)
T KOG1788|consen 845 -LCVNLER-HVIQLLLELALEVLVPPF--LTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLN 920 (2799)
T ss_pred -ceecchH-HHHHHHHHHHHHhhCCch--hhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhh
Confidence 0000000 111111 12222322 122222221 1111111 0 1234567788999999998888
Q ss_pred CHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc---CCChhhhHHHHHHHHHH
Q 000145 445 TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG---LSSEQHQEYAVQLIAIL 501 (2054)
Q Consensus 445 d~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~---s~d~~Vr~~Aa~aL~nL 501 (2054)
.+..|..-...+..+++.++.+.......|.++.|++++. +++...-.++..++.-|
T Consensus 921 ypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvemL 980 (2799)
T KOG1788|consen 921 YPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEML 980 (2799)
T ss_pred ChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHHH
Confidence 8999999999999999888888888888888888877653 33333444444443333
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.25 E-value=1.6e+02 Score=42.06 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=109.0
Q ss_pred chHHHHHHhcc----CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhc-cCCHHHHHHHHHHHHHhhCCCCc
Q 000145 638 GLRSLVQVLNS----SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT-SNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 638 aI~~LV~LLks----~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~-dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
..+-++...+. ++++++..|.-+|..+..-+.+.+.. .++.|+..+. +.++.+|.++.-+++-++-.+|.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 34555566643 47999999999999997756555543 4688888886 78899999999999999876554
Q ss_pred ccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
. -.-+.+.|..-|++.++.||+.|..+|.+|..+.- +.-.|-+..+..++.+++++++.-|-.-...|
T Consensus 995 ---l-----ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 995 ---L-----IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ---c-----cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 1 12366778889999999999999999999975433 33457889999999999999999887655555
Q ss_pred hhc
Q 000145 793 LKH 795 (2054)
Q Consensus 793 ~~~ 795 (2054)
...
T Consensus 1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred hhc
Confidence 553
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=87.02 E-value=11 Score=51.20 Aligned_cols=173 Identities=21% Similarity=0.173 Sum_probs=102.3
Q ss_pred ccchHHHHHHhccCCHHHHHHHHHHHHHHhhcC-hhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhhCCC
Q 000145 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMR-QDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRPT 710 (2054)
Q Consensus 636 ~GaI~~LV~LLks~s~evre~Aa~ALanLas~~-~e~r~~Iv~~g~V~~Lv~LL~d----gs~~vr~~AA~AL~nLs~s~ 710 (2054)
..++..+.+++.+..-...+ ++..|..+...- .. ....+..+..+++. +++.++..|..+++.+....
T Consensus 394 ~~av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~P------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~ 466 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRP------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKY 466 (618)
T ss_dssp HHHHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCC------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCce
Confidence 34577777878775433333 445565554421 11 12345666666653 45678888888888876511
Q ss_pred Ccc------cchhHHHHhcCChhhHHhhhh----cCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC---
Q 000145 711 KTK------TTNKMSYIAEGDVKPLIKLAK----TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG--- 777 (2054)
Q Consensus 711 ~~~------d~~r~~I~~~gaV~~Lv~LL~----s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~--- 777 (2054)
... ...+........++.|...+. ..+.+.+..++.||+|+. .+..++.|..++...
T Consensus 467 c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g----------~~~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 467 CVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLG----------HPESIPVLLPYIEGKEEV 536 (618)
T ss_dssp HTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S
T ss_pred eecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccC----------CchhhHHHHhHhhhcccc
Confidence 110 001111222346666766665 356677778999999996 345788888877766
Q ss_pred CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHH
Q 000145 778 TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVV 836 (2054)
Q Consensus 778 ~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~AL 836 (2054)
+..+|..|+++|.++....| ....+.|+.++.+..++...+..|...|
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~-----------~~v~~~l~~I~~n~~e~~EvRiaA~~~l 584 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCP-----------EKVREILLPIFMNTTEDPEVRIAAYLIL 584 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-H-----------HHHHHHHHHHHH-TTS-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCc-----------HHHHHHHHHHhcCCCCChhHHHHHHHHH
Confidence 68899999999998865431 3355778888888778877788776543
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=86.87 E-value=30 Score=43.56 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=134.7
Q ss_pred HHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchh-----hhh-c-cccHHHHHhhhcCCChhhhHHHHHHH
Q 000145 426 QWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWE-----AIG-K-REGIQLLISLLGLSSEQHQEYAVQLI 498 (2054)
Q Consensus 426 ~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~-----~Iv-e-~ggIp~LV~LL~s~d~~Vr~~Aa~aL 498 (2054)
..+...+.+..|+..+..-+-+.+..++..+.++-....+.+. -+. . ...+..|+.-++ ++++-..+-..|
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~ml 147 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDML 147 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHH
Confidence 3455567788889989888999999999999888765443332 121 1 233444444444 556667777788
Q ss_pred HHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhc-CChhHHHHHHH--cCChHHHHHhhccCChhHH
Q 000145 499 AILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC-HSEDIRACVES--AGAVPAFLWLLKSGGPKGQ 575 (2054)
Q Consensus 499 ~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~-~sd~~r~~I~e--~GaI~aLV~LLkS~~~evq 575 (2054)
+.+..+ +.....+.....+..+.+....++-++-..|..++..+-. |.....+.+.. .......-.++.+++--++
T Consensus 148 Rec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 148 RECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 888774 4444455566677888888888999999999999988644 33333444432 2344555679999999999
Q ss_pred HHHHHHHHHHHHhh-----------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 576 DASAMALTKLIRAA-----------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 576 ~~AA~AL~nLs~~~-----------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
+.+...|+.+-.+. +..-+..++.+|++.+..++..+-+....+......+..+.
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~ 292 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIV 292 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHH
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHH
Confidence 99999999998663 23456778999999999999998888877765444433333
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] | Back alignment and domain information |
|---|
Probab=86.79 E-value=1.5e+02 Score=41.23 Aligned_cols=238 Identities=17% Similarity=0.168 Sum_probs=149.2
Q ss_pred cCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhccCchhHHHHHh---cCC
Q 000145 51 NMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-GTPLAKVNVAATLSVLCKDEDLRLKVLL---GGC 126 (2054)
Q Consensus 51 ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks-~s~evr~~AA~vL~~Ls~~ee~r~~v~~---~Ga 126 (2054)
.+..|...-.+...+..++.....+..++. ..+...+..+.- ..+-++..|++.++..|+. +++. -+.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~---~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~-----~vl~~~~p~i 531 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQ---HFLNATVNALTMDVPPPVKISAVRAFCGYCKV-----KVLLSLQPMI 531 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHH---HHHHHHHHhhccCCCCchhHHHHHHHHhccCc-----eeccccchHH
Confidence 334454444455555544444333444332 245555555543 4667888899999887732 2222 155
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC
Q 000145 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206 (2054)
Q Consensus 127 Ip~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e 206 (2054)
+..|.++....+.++...-..+|...+..+. + .....++.+.|.++.+....+ +++.+...+-.++..++....
T Consensus 532 ld~L~qlas~~s~evl~llmE~Ls~vv~~dp--e---f~as~~skI~P~~i~lF~k~s-~DP~V~~~~qd~f~el~q~~~ 605 (1005)
T KOG2274|consen 532 LDGLLQLASKSSDEVLVLLMEALSSVVKLDP--E---FAASMESKICPLTINLFLKYS-EDPQVASLAQDLFEELLQIAA 605 (1005)
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHHhccCh--h---hhhhhhcchhHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHH
Confidence 6677777777788888888999999987522 1 223445667788877765544 567788888888888876322
Q ss_pred chhHHHHhhCChHHHHhhhccCC----HHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHH
Q 000145 207 GYWRATLEAGGVDIIVGLLSSDN----AAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADA 282 (2054)
Q Consensus 207 ~r~~aI~eaGGI~~LV~LL~s~s----~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~a 282 (2054)
.. --...-.+|.++..|..+. ......++.+|..+.+..+.-.......-+.|.+.++.-+..|.++...+-++
T Consensus 606 ~~--g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~Ec 683 (1005)
T KOG2274|consen 606 NY--GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATEC 683 (1005)
T ss_pred hh--cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHH
Confidence 11 0112236899999998875 56777888888888865554444444445777777777666777888899999
Q ss_pred HHHHhhccHHHHHHHHhcCCHH
Q 000145 283 LEALSSKSIKAKKAVVAADGVP 304 (2054)
Q Consensus 283 L~nLs~~s~e~Rk~I~eaggL~ 304 (2054)
|+.+.+...+.--.-...+|..
T Consensus 684 Lra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 684 LRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred HHHHHhcCHHHHHhhccCCCcc
Confidence 9998775333322333344443
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.70 E-value=10 Score=48.95 Aligned_cols=158 Identities=17% Similarity=0.227 Sum_probs=100.7
Q ss_pred hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHH-hccCCHHHHHHHHHHHHHHhhcChhh
Q 000145 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV-LNSSNEENQEYAASVLADLFSMRQDI 671 (2054)
Q Consensus 593 ~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~L-Lks~s~evre~Aa~ALanLas~~~e~ 671 (2054)
.-..+.+++.+.++-.+..-.-+++.-. .+-...|+++.|.++ .+++++++|..|+.+|.-+|..+
T Consensus 517 add~I~ell~d~ds~lRy~G~fs~alAy----------~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--- 583 (926)
T COG5116 517 ADDYINELLYDKDSILRYNGVFSLALAY----------VGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--- 583 (926)
T ss_pred HHHHHHHHhcCchHHhhhccHHHHHHHH----------hcCCcchhHhhhheeecccCchHHHHHHHHheeeeEecC---
Confidence 3345566676666554433222222111 112345678888887 67789999999999999988633
Q ss_pred hhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000145 672 CGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2054)
Q Consensus 672 r~~Iv~~g~V~~Lv~LL~d-gs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~N 750 (2054)
...+...+++|.+ .++.+|...|-+|+-.+.+. +.+. ++..|-.+..+.++-||..|+-+++.
T Consensus 584 ------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~----G~~~------a~diL~~L~~D~~dfVRQ~AmIa~~m 647 (926)
T COG5116 584 ------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGT----GDKV------ATDILEALMYDTNDFVRQSAMIAVGM 647 (926)
T ss_pred ------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCC----ccHH------HHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 3455666777754 57899999999998877632 2221 45556677788888999999999988
Q ss_pred hhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHH
Q 000145 751 LLS--DPDIAAEVLLEDVVSALTRVLAEGTSEG 781 (2054)
Q Consensus 751 La~--~~e~r~~Iv~~g~I~~LV~LL~s~~~ev 781 (2054)
+.. +|+..... .+.+..+.+++.+.++..
T Consensus 648 Il~Q~n~~Lnp~v--~~I~k~f~~vI~~Khe~g 678 (926)
T COG5116 648 ILMQCNPELNPNV--KRIIKKFNRVIVDKHESG 678 (926)
T ss_pred HHhhcCcccChhH--HHHHHHHHHHHhhhhHhH
Confidence 754 44432221 124455666666655543
|
|
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=86.49 E-value=6.7 Score=43.95 Aligned_cols=121 Identities=12% Similarity=0.111 Sum_probs=93.5
Q ss_pred HHHhhcchHHHHHHHhccCCH------HHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC--ChhhhHHHHHH
Q 000145 426 QWVSHAEAKKVLIGLITMATA------DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS--SEQHQEYAVQL 497 (2054)
Q Consensus 426 ~~L~~~g~I~~LI~LL~ssd~------evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~--d~~Vr~~Aa~a 497 (2054)
.++...+|+..|+.++..+.. +....+..++..+-..+ ...+......-|...+...+.+ +..+...++..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 456778999999999988763 66677778888877763 4344555667777777777644 57789999999
Q ss_pred HHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCC
Q 000145 498 IAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS 547 (2054)
Q Consensus 498 L~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~s 547 (2054)
|-++...++.....+.+.=.++.|+..|..++++++.++...+-.|-...
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 99999865555666666777899999999999999999998887775543
|
|
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=86.46 E-value=19 Score=50.01 Aligned_cols=184 Identities=15% Similarity=0.104 Sum_probs=112.4
Q ss_pred cCcHHHHHHHHccC-----CHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc----CC----HHHHHHHHHHH
Q 000145 83 AQAMPLFISILRSG-----TPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS----ES----TDTRKAAAEAL 149 (2054)
Q Consensus 83 aGgVp~LV~LLks~-----s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s----ed----~eVr~aAa~AL 149 (2054)
.||+..++.++.+- ..+.......+|...++-..+|+.+++.|+++.|++.|.. +. .++-+.-+..+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 79999999999873 3456666778888888999999999999999999988853 23 56667767666
Q ss_pred HHHhcCCCCCChhHHHHHHHcC--------cHHHHHHhhCCCC-CCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHH
Q 000145 150 YEVSSGGLSDDHVGMKIFVTEG--------VVPTLWDQLNPKN-KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDI 220 (2054)
Q Consensus 150 ~nLS~~~~nk~~~~re~Iv~aG--------~Vp~Lv~LL~s~s-~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~ 220 (2054)
..|.......+..+.+...... -|..|++.+.++. ...+.+....+++|-.|+.+++.....+++.= ..
T Consensus 196 E~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F--~p 273 (802)
T PF13764_consen 196 ESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF--KP 273 (802)
T ss_pred HHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH--HH
Confidence 6665421100000011111112 3778888887552 22467888999999999999877644444321 11
Q ss_pred HHhhhccC--CHHHHHHHHHHHHHHHhhc------CCCcchhcccchHHHHHHHhc
Q 000145 221 IVGLLSSD--NAAAQSNAASLLARLMLAF------GDSIPTVIDSGAVKALVQLVG 268 (2054)
Q Consensus 221 LV~LL~s~--s~evq~~A~~aL~nLs~~~------~~~r~~i~~sGaL~~LL~LL~ 268 (2054)
.+++=.-+ ...--..-+..++.++.+- ...+..+.+.|.+...+.-+.
T Consensus 274 ~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~ 329 (802)
T PF13764_consen 274 YLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLL 329 (802)
T ss_pred hcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHH
Confidence 11111101 1111123366667766321 233455677888877766664
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=85.51 E-value=4.2 Score=41.96 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccC
Q 000145 58 RELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSE 137 (2054)
Q Consensus 58 re~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~se 137 (2054)
|..++-.|...+..-+..-.... ...+++++..+.+++..+|..||..|.++++.........-...++.|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l--~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL--DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33455555555444322222222 2468999999999999999999999999986543332223347788889999999
Q ss_pred CHHHHHHHHHHHHHH
Q 000145 138 STDTRKAAAEALYEV 152 (2054)
Q Consensus 138 d~eVr~aAa~AL~nL 152 (2054)
|+.||..| ..|-++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99988776 455444
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=85.36 E-value=2 Score=48.04 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=93.6
Q ss_pred hHHHHHHhc--cCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 639 LRSLVQVLN--SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 639 I~~LV~LLk--s~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
++.++..+. ...+++|..+.-++..+-. ..+.-.....-+.+..++.+++..-...+..++..+.-..+. ..
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~----~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~d--v~ 78 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLD----AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPD--VG 78 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHH--HH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHH--HH
Confidence 334444333 3577888888888888742 111112222223333444444444666788888888754433 33
Q ss_pred hHHHHhcCChhhHHhhhh--cCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHc-CCCHH-HHHHHHHHHHHh
Q 000145 717 KMSYIAEGDVKPLIKLAK--TSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA-EGTSE-GKKNASRALHQL 792 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~--s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~-s~~~e-vr~~Aa~AL~nL 792 (2054)
..-+...|..+.+..+.. ..+..++..++.+|..=+.+...|..|. ..+++-|.+... +.++. +|..|+-+|++|
T Consensus 79 ~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 79 SELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 334556788888888988 6788888888888887776666665554 478889999885 55566 788888888764
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=85.02 E-value=0.73 Score=48.71 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=36.5
Q ss_pred hhcCC--CceEEEEEcCCcchh--hcCCCccceEeeccCC----CCcccceee
Q 000145 2005 LHCLP--GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNG----PPRQTKVIF 2049 (2054)
Q Consensus 2005 ~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~ 2049 (2054)
|+..| |.|+|+|.++.||+. ..|.++.||++.++++ ..++|+|+.
T Consensus 9 l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~ 61 (125)
T cd04031 9 LWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVK 61 (125)
T ss_pred EEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccC
Confidence 34455 899999999999975 4678999999999873 567899885
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=84.93 E-value=45 Score=42.76 Aligned_cols=98 Identities=12% Similarity=0.244 Sum_probs=70.0
Q ss_pred CChHHHHHhhccC---CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhC-CCCCCChhHHHHHHHHHHH
Q 000145 125 GCIPPLLSLLKSE---STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLN-PKNKQDNVVQGFVTGALRN 200 (2054)
Q Consensus 125 GaIp~LV~LL~se---d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~-s~s~~d~~V~e~Al~aL~n 200 (2054)
.....|..++.+. -+.+-..|+..+..+-. +++..-..+.+.|.++.+++.+. ..-.....+....-.+|..
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~----nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~A 181 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIH----NEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSA 181 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHh----cCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhH
Confidence 3345555666652 56778888888888886 36666788899999999999988 4433334556566688888
Q ss_pred HhcCCCchhHHHHhhCChHHHHhhhcc
Q 000145 201 LCGDKDGYWRATLEAGGVDIIVGLLSS 227 (2054)
Q Consensus 201 L~~~~e~r~~aI~eaGGI~~LV~LL~s 227 (2054)
+|-+..|. +.+.+.+.++.+.+.+.+
T Consensus 182 icLN~~Gl-~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 182 ICLNNRGL-EKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HhcCHHHH-HHHHhcChHHHHHHHhCC
Confidence 99888775 566666777777766655
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=84.84 E-value=17 Score=48.77 Aligned_cols=174 Identities=22% Similarity=0.160 Sum_probs=101.0
Q ss_pred cccchHHHHHHhccCCHHHHHHHHHHHHHHhhc-ChhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhhCC
Q 000145 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSM-RQDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRP 709 (2054)
Q Consensus 635 ~~GaI~~LV~LLks~s~evre~Aa~ALanLas~-~~e~r~~Iv~~g~V~~Lv~LL~d----gs~~vr~~AA~AL~nLs~s 709 (2054)
...++..+.+.++++.-...+ ++.++..+... .. -....++.+..++++ .++.++..|..+++++...
T Consensus 355 T~~a~~~i~~~i~~~~~~~~e-a~~~~~~~~~~~~~------Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~ 427 (574)
T smart00638 355 TPPALKFIKQWIKNKKITPLE-AAQLLAVLPHTARY------PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRR 427 (574)
T ss_pred CHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHhhhc------CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHH
Confidence 344577777777776422211 22222222211 01 123456777777764 3556788888888887751
Q ss_pred CCcccchhHHHHhcCChhhHHhhhhc----CCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHc-C--CCHHHH
Q 000145 710 TKTKTTNKMSYIAEGDVKPLIKLAKT----SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA-E--GTSEGK 782 (2054)
Q Consensus 710 ~~~~d~~r~~I~~~gaV~~Lv~LL~s----~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~-s--~~~evr 782 (2054)
.......+........++.|...|.. .+.+.+...+.+|+|+.. +..++.|..++. + .+..+|
T Consensus 428 ~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR 497 (574)
T smart00638 428 YCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIR 497 (574)
T ss_pred HhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHH
Confidence 11100110011122366666665543 455556679999999863 345556666655 2 257899
Q ss_pred HHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHH
Q 000145 783 KNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVV 836 (2054)
Q Consensus 783 ~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~AL 836 (2054)
..|+++|.++....| ......|+.++.+..++...+..|..+|
T Consensus 498 ~~Av~Alr~~a~~~p-----------~~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 498 LAAILALRNLAKRDP-----------RKVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHHHHHHHHHHhCc-----------hHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 999999999986432 2345668888887777777777776543
|
|
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=84.84 E-value=0.63 Score=49.38 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=38.2
Q ss_pred hhhcCC--CceEEEEEcCCcchhhc--CCCccceEeeccC----CCCcccceeee
Q 000145 2004 LLHCLP--GCLTVTIKRGNNLKQTM--GTTNAFCRLTIGN----GPPRQTKVIFT 2050 (2054)
Q Consensus 2004 ~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~ 2050 (2054)
-|++-| |.|+|+|.++.||+..- |.++.||++.+++ .+.++|+|+.+
T Consensus 8 ~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~ 62 (127)
T cd04030 8 TIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD 62 (127)
T ss_pred EEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC
Confidence 356667 89999999999997554 7899999999976 45678998864
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=84.07 E-value=0.92 Score=47.76 Aligned_cols=39 Identities=26% Similarity=0.430 Sum_probs=33.1
Q ss_pred eEEEEEcCCcchhh--cCCCccceEeeccCC--CCcccceeee
Q 000145 2012 LTVTIKRGNNLKQT--MGTTNAFCRLTIGNG--PPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~ 2050 (2054)
|+|+|.+|.||+.. .|.++.||++.+|++ ..++|+|+..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~ 44 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN 44 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC
Confidence 89999999999875 578899999999875 4579999853
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=84.04 E-value=17 Score=46.07 Aligned_cols=218 Identities=17% Similarity=0.052 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHcc-CCH-HHHHHHHHHHHHhccCc
Q 000145 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-GTP-LAKVNVAATLSVLCKDE 115 (2054)
Q Consensus 38 ~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks-~s~-evr~~AA~vL~~Ls~~e 115 (2054)
...|.-+++.+. ++.+...|..++-.|..-+..+ ..++.+.. .|.+..+++.+.. ++. ..-..++.++..++.+.
T Consensus 20 ~Dev~ylld~l~-~~~~~s~Rr~sll~La~K~~~~-~Fr~~~ra-~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~ 96 (361)
T PF07814_consen 20 ADEVEYLLDGLE-SSSSSSVRRSSLLELASKCADP-QFRRQFRA-HGLVKRLFKALSDAPDDDILALATAAILYVLSRDG 96 (361)
T ss_pred HHHHHHHHhhcc-cCCCccHHHHHHHHHHHHhCCH-HHHHHHHH-cCcHHHHHHHhccccchHHHHHHHHHHHHHHccCC
Confidence 455777888887 4445566777777777766654 66666666 5889999998854 333 33333444445555554
Q ss_pred hhHHHHHhcCChHHHHHhhc-----c--C-------------------------------------CHHHHHHHHHHHHH
Q 000145 116 DLRLKVLLGGCIPPLLSLLK-----S--E-------------------------------------STDTRKAAAEALYE 151 (2054)
Q Consensus 116 e~r~~v~~~GaIp~LV~LL~-----s--e-------------------------------------d~eVr~aAa~AL~n 151 (2054)
..-..+...+....+++++. + . ...-+.-|..++..
T Consensus 97 ~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~ 176 (361)
T PF07814_consen 97 LNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALES 176 (361)
T ss_pred cchhhhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHH
Confidence 33333333344444455554 0 0 11122334444555
Q ss_pred Hhc---------CCCCC-ChhHHHHHHHcCcHHHHHHhhCC----CC---------CCChhHHHHHHHHHHHHhcCCCch
Q 000145 152 VSS---------GGLSD-DHVGMKIFVTEGVVPTLWDQLNP----KN---------KQDNVVQGFVTGALRNLCGDKDGY 208 (2054)
Q Consensus 152 LS~---------~~~nk-~~~~re~Iv~aG~Vp~Lv~LL~s----~s---------~~d~~V~e~Al~aL~nL~~~~e~r 208 (2054)
++. ....+ ....|+.+...|++..+++.+.. .. ...-.....++++|.+.+..++.+
T Consensus 177 l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~n 256 (361)
T PF07814_consen 177 LVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEEN 256 (361)
T ss_pred HHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccc
Confidence 520 00000 11235667777889999998752 11 011234556788888888777666
Q ss_pred hHHHHhhC--ChHHHH-hhhcc---CCHHHHHHHHHHHHHHHhhcCCCcchhcccc
Q 000145 209 WRATLEAG--GVDIIV-GLLSS---DNAAAQSNAASLLARLMLAFGDSIPTVIDSG 258 (2054)
Q Consensus 209 ~~aI~eaG--GI~~LV-~LL~s---~s~evq~~A~~aL~nLs~~~~~~r~~i~~sG 258 (2054)
+....... ....+. .++.. ........+++++.|+++.+++.+..+...+
T Consensus 257 q~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 257 QSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred hHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 55544432 222222 22222 2244567889999999988888877776553
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=83.85 E-value=5.9 Score=47.53 Aligned_cols=146 Identities=13% Similarity=0.132 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHH-------HHccC-----CHHHHHHHHHHHHHhccCchhHHHH
Q 000145 54 SPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFIS-------ILRSG-----TPLAKVNVAATLSVLCKDEDLRLKV 121 (2054)
Q Consensus 54 s~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~-------LLks~-----s~evr~~AA~vL~~Ls~~ee~r~~v 121 (2054)
+++.|+.|+..|.+-....++-.-.+-..-|.+..|++ .+..+ ...-..++...|..++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 46778887555544433222333333222566666665 22222 1234556777778889999999999
Q ss_pred HhcCChHHHHHhhccC-----CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHH
Q 000145 122 LLGGCIPPLLSLLKSE-----STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG 196 (2054)
Q Consensus 122 ~~~GaIp~LV~LL~se-----d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~ 196 (2054)
..+...--|..+|+.. -+.+|-.+++.++.|... .+.+....+.+...||..++.+..++. --..-|.-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~---d~~evi~fLl~tEiiplcLr~me~Gse---lSKtvAtf 161 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKT---DDPEVISFLLQTEIIPLCLRIMEFGSE---LSKTVATF 161 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT-----HHHHHHHHCTTHHHHHHHHHHHS-H---HHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcC---CcHHHHHHHHhhchHHHHHHHHHhccH---HHHHHHHH
Confidence 9998876777777652 366899999999999974 255667778888999999999987651 22334666
Q ss_pred HHHHHhcCC
Q 000145 197 ALRNLCGDK 205 (2054)
Q Consensus 197 aL~nL~~~~ 205 (2054)
++..+-.++
T Consensus 162 IlqKIL~dd 170 (262)
T PF04078_consen 162 ILQKILLDD 170 (262)
T ss_dssp HHHHHHHSH
T ss_pred HHHHHHcch
Confidence 666665544
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=83.68 E-value=0.96 Score=47.19 Aligned_cols=41 Identities=27% Similarity=0.485 Sum_probs=33.6
Q ss_pred CceEEEEEcCCcchh--hc-CCCccceEeeccC--CCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQ--TM-GTTNAFCRLTIGN--GPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~--~~~~~~~~~~~ 2050 (2054)
|.|+|+|.+|.||+. .. |.++.||++.++. .+..+|+|+.+
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~ 46 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK 46 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC
Confidence 889999999999975 33 7899999999853 35689999853
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=83.30 E-value=14 Score=48.92 Aligned_cols=173 Identities=19% Similarity=0.199 Sum_probs=100.5
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHHh-h--chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccch
Q 000145 563 FLWLLKSGGPKGQDASAMALTKLIRA-A--DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2054)
Q Consensus 563 LV~LLkS~~~evq~~AA~AL~nLs~~-~--e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI 639 (2054)
++...+ +++..+.-|+..+..++.. + ...++..++.|..+++..|+..+.+.|-.++.. .++.+.+ ..
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~--~~~~v~k------va 98 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKD--NPEHVSK------VA 98 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHH------HH
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHh--HHHHHhH------HH
Confidence 344444 5778888888888888765 2 356888999999999999999888777766533 3344443 48
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhc---cCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT---SNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~---dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
+.|+++|.++++.-...+-.+|..|...++ .+.+..+...+. .+++.+|+.+..-|..-....+.. ..
T Consensus 99 DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~-~~ 169 (556)
T PF05918_consen 99 DVLVQLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPE-LL 169 (556)
T ss_dssp HHHHHHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TT-TS
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHH-Hh
Confidence 899999999888888888888888876443 233455555554 677888988776664332211110 11
Q ss_pred h-HHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 717 K-MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 717 r-~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
. ..=.+.-++..+.+.|.+-..+--.-.+..|..+-.
T Consensus 170 ~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~ 207 (556)
T PF05918_consen 170 TPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKI 207 (556)
T ss_dssp ---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG
T ss_pred hchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCcc
Confidence 1 001122244455566766444444456667776654
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=83.13 E-value=1e+02 Score=43.24 Aligned_cols=238 Identities=16% Similarity=0.156 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHc----cCC----HHHHHHHHHHHH
Q 000145 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR----SGT----PLAKVNVAATLS 109 (2054)
Q Consensus 38 ~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLk----s~s----~evr~~AA~vL~ 109 (2054)
...+.+.++.++..+.. ......+..|...|..-+.+|+.+.+ .|+++.|++.|+ .+. +++-.....++.
T Consensus 119 L~~ll~~l~~~~~~~~~-~~ll~~llkLL~~c~Kv~~NR~~Ll~-~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE 196 (802)
T PF13764_consen 119 LEVLLSRLDSIRDFSRG-RELLQVLLKLLRYCCKVKVNRRALLE-LNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE 196 (802)
T ss_pred HHHHHHHHHhhccccCc-HHHHHHHHHHHHHHHhhHHHHHHHHH-cCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence 34455566666543333 33444555555556666788888888 899999999885 333 566677777775
Q ss_pred HhccCchhHHH-H----HhcC-----C---hHHHHHhhcc----CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCc
Q 000145 110 VLCKDEDLRLK-V----LLGG-----C---IPPLLSLLKS----ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGV 172 (2054)
Q Consensus 110 ~Ls~~ee~r~~-v----~~~G-----a---Ip~LV~LL~s----ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~ 172 (2054)
.+..+...... . .... . +..+++.+.+ .++.+....++.|-.|+.+ +++..+.+++ .
T Consensus 197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G----~~e~m~~Lv~--~ 270 (802)
T PF13764_consen 197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYG----NEEKMDALVE--H 270 (802)
T ss_pred HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcC----CHHHHHHHHH--H
Confidence 55433221111 0 1112 2 6666666665 3788999999999999985 3333444332 1
Q ss_pred HHHHHHh--hCCCCCCChhHHHHHHHHHHHHhcCC----Cc--hhHHHHhhCChHHHHhhhccCCH--------H-----
Q 000145 173 VPTLWDQ--LNPKNKQDNVVQGFVTGALRNLCGDK----DG--YWRATLEAGGVDIIVGLLSSDNA--------A----- 231 (2054)
Q Consensus 173 Vp~Lv~L--L~s~s~~d~~V~e~Al~aL~nL~~~~----e~--r~~aI~eaGGI~~LV~LL~s~s~--------e----- 231 (2054)
....+++ ++...+.+. ...+.+++.++.+- .| -+..+.+.|.+...+.+|...-+ +
T Consensus 271 F~p~l~f~~~D~~~~~~~---~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDE---QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred HHHhcChhhcccccCchH---HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 1221121 111111111 23355566555543 22 24568888888888888876422 2
Q ss_pred ---HHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhc-cCCChhHHHHHHHHHHHHhh
Q 000145 232 ---AQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG-QNNDISVRASAADALEALSS 288 (2054)
Q Consensus 232 ---vq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~-s~~d~~Vr~~Aa~aL~nLs~ 288 (2054)
....++.+|.-|+.++...+.. ...+.+ +++..|. ...+..+-..|-.+|..+..
T Consensus 348 ~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHEPTQLL-IAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2345777888888766655544 445556 4444443 22233444555556666655
|
|
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=82.85 E-value=0.9 Score=47.60 Aligned_cols=40 Identities=20% Similarity=0.419 Sum_probs=34.2
Q ss_pred CceEEEEEcCCcchhh--------cCCCccceEeeccCCCCcccceeee
Q 000145 2010 GCLTVTIKRGNNLKQT--------MGTTNAFCRLTIGNGPPRQTKVIFT 2050 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 2050 (2054)
|.|.|+|.++.||+.. -|.++.||++.+|+ ...+|+|+.+
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~ 48 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKE 48 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-EeEEccccCC
Confidence 7899999999999864 26789999999987 7889998753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=82.71 E-value=0.98 Score=48.18 Aligned_cols=39 Identities=23% Similarity=0.390 Sum_probs=34.0
Q ss_pred eEEEEEcCCcchhhcCCCccceEeeccC-CCCcccceeee
Q 000145 2012 LTVTIKRGNNLKQTMGTTNAFCRLTIGN-GPPRQTKVIFT 2050 (2054)
Q Consensus 2012 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 2050 (2054)
|+|+|.++.||....|.++.||++.+++ ++.++|+|+..
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~~~~kT~v~~~ 40 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPPQKYQSSTQKN 40 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCCcEEEeEEEec
Confidence 6899999999988778999999999976 56689998865
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=82.68 E-value=8.6 Score=50.90 Aligned_cols=119 Identities=24% Similarity=0.259 Sum_probs=83.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCC
Q 000145 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGD 604 (2054)
Q Consensus 528 ~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~~~ 604 (2054)
++...+.-|+..+...-.+-++..+ .++.+++.|..+++..+|..|...|..++.+.. .++...|++||..+
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~td 108 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTD 108 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcc
Confidence 5889999999999988877776544 478999999999999999999999999998743 56789999999998
Q ss_pred CcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhc---cCCHHHHHHHHHHHH
Q 000145 605 SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN---SSNEENQEYAASVLA 662 (2054)
Q Consensus 605 ~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLk---s~s~evre~Aa~ALa 662 (2054)
++.....+..+|..+....+. +.+..+..-+. ++++.+|+.+...|.
T Consensus 109 d~~E~~~v~~sL~~ll~~d~k-----------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 109 DPVELDAVKNSLMSLLKQDPK-----------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp -HHHHHHHHHHHHHHHHH-HH-----------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcCcH-----------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 887777778888776643221 23555555444 568888998887664
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=82.16 E-value=6 Score=47.60 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhc
Q 000145 232 AQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIV 311 (2054)
Q Consensus 232 vq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~ 311 (2054)
....|+++|.-+|.-|+..+..+.....+..++.++.......++..+..+|..+..+++.+.+.+.+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567899999999999999999999999999999975667889999999999999999999999999999999999998
Q ss_pred CCch
Q 000145 312 APSK 315 (2054)
Q Consensus 312 s~s~ 315 (2054)
+.+.
T Consensus 187 ~~~~ 190 (257)
T PF08045_consen 187 SKST 190 (257)
T ss_pred cccc
Confidence 8663
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=81.88 E-value=9.2 Score=52.16 Aligned_cols=154 Identities=19% Similarity=0.173 Sum_probs=103.3
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhh
Q 000145 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2054)
Q Consensus 592 ~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~ 671 (2054)
.++|.+++........++..-..+|.++....+..-.... -....+.|++-+.-+|..+|-.+...+.-+....+..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~---~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQ---FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccc---hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcccc
Confidence 4678888888877777777777888877654443211111 1234666777777789999888888887775532222
Q ss_pred hhhhhhCCCHHHHHHHhccCC---HHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000145 672 CGSLATDEIVNPCMRLLTSNT---QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2054)
Q Consensus 672 r~~Iv~~g~V~~Lv~LL~dgs---~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL 748 (2054)
...- -.-.+|.+..+-++.+ ..+|..|..+|..|.+-.|. .+-.-.+..+++.|++.|.+..--||++|+.+=
T Consensus 944 ~t~~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~---~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 944 QTEH-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPT---KSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred chHH-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCC---cccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1111 1234566666655544 57899999999999874454 222234456889999999998888999999988
Q ss_pred HHhh
Q 000145 749 ANLL 752 (2054)
Q Consensus 749 ~NLa 752 (2054)
.+|.
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 8775
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.79 E-value=47 Score=43.39 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=103.0
Q ss_pred hHhhhhhcCCHHHHHHHHHHHH--HHhcCChhHHHHHHHcCChHHHHHh-hccCChhHHHHHHHHHHHHHHhhchhhHHH
Q 000145 520 PLVQLLEAGSQKAREVAAHVLW--ILCCHSEDIRACVESAGAVPAFLWL-LKSGGPKGQDASAMALTKLIRAADSATINQ 596 (2054)
Q Consensus 520 ~LV~LL~s~s~~Vre~AA~aL~--nLa~~sd~~r~~I~e~GaI~aLV~L-LkS~~~evq~~AA~AL~nLs~~~e~~~Ip~ 596 (2054)
.+-++|.+.++-.|...+..++ +.... ..+++..|+.. ..+++.++|+.|+.+|+-++..+. ..++.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg---------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~-~~lv~ 589 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG---------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR-DLLVG 589 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC---------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc-chhhH
Confidence 3445666667777776654433 33322 25678888876 677889999999999998876643 45555
Q ss_pred HHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh-cChhhhhh
Q 000145 597 LLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS-MRQDICGS 674 (2054)
Q Consensus 597 Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas-~~~e~r~~ 674 (2054)
.+++|. +.+++|+..++-+|+..+..... .-++..|-.++.+.++-+|+.|.-++.-+.. ++++.-..
T Consensus 590 tvelLs~shN~hVR~g~AvaLGiacag~G~----------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~ 659 (926)
T COG5116 590 TVELLSESHNFHVRAGVAVALGIACAGTGD----------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPN 659 (926)
T ss_pred HHHHhhhccchhhhhhhHHHhhhhhcCCcc----------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChh
Confidence 566665 56788888888888866533222 2247777778888899999999988887753 33333222
Q ss_pred hhhCCCHHHHHHHhccCCHHH
Q 000145 675 LATDEIVNPCMRLLTSNTQMV 695 (2054)
Q Consensus 675 Iv~~g~V~~Lv~LL~dgs~~v 695 (2054)
+ .++++.+.++..+.++..
T Consensus 660 v--~~I~k~f~~vI~~Khe~g 678 (926)
T COG5116 660 V--KRIIKKFNRVIVDKHESG 678 (926)
T ss_pred H--HHHHHHHHHHHhhhhHhH
Confidence 2 356777788887766543
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=81.59 E-value=2.6 Score=44.90 Aligned_cols=72 Identities=15% Similarity=0.159 Sum_probs=58.3
Q ss_pred CChhhHHhhhh-cCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 724 GDVKPLIKLAK-TSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 724 gaV~~Lv~LL~-s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
..++.|+++|. +.++.+..-||.=|+.++. .|..+..+.+.|+=..+.++|.+.++++|..|..++..+..+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 37888999994 4566666678888888886 788888888889999999999999999999999999888754
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=81.51 E-value=22 Score=47.84 Aligned_cols=162 Identities=13% Similarity=0.148 Sum_probs=95.3
Q ss_pred cHHHHHHHHccC----CHHHHHHHHHHHHHh----ccCchhHHHHHhcCChHHHHHhhcc----CCHHHHHHHHHHHHHH
Q 000145 85 AMPLFISILRSG----TPLAKVNVAATLSVL----CKDEDLRLKVLLGGCIPPLLSLLKS----ESTDTRKAAAEALYEV 152 (2054)
Q Consensus 85 gVp~LV~LLks~----s~evr~~AA~vL~~L----s~~ee~r~~v~~~GaIp~LV~LL~s----ed~eVr~aAa~AL~nL 152 (2054)
.+..+..+++++ .+.++..+.-.++.+ |.+.+..........++.+.+.|.. ++.+.+...+++|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 455666677653 344555555444444 4333322111223455666665543 4677788889999998
Q ss_pred hcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CH
Q 000145 153 SSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NA 230 (2054)
Q Consensus 153 S~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~ 230 (2054)
... . .++.|...+.........++..|+.+|+.+....+.. .-+.+..+..+. ++
T Consensus 474 g~~----~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~ 530 (574)
T smart00638 474 GHP----S-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPP 530 (574)
T ss_pred CCh----h-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCCh
Confidence 851 1 5666777776333345678999999999987644433 456667766554 47
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHH
Q 000145 231 AAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASA 279 (2054)
Q Consensus 231 evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~A 279 (2054)
++|..|+.+|.. .+|. ...+..+...+..+.+..|+...
T Consensus 531 EvRiaA~~~lm~---t~P~-------~~~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 531 EVRMAAVLVLME---TKPS-------VALLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred HHHHHHHHHHHh---cCCC-------HHHHHHHHHHHhhcCcHHHHHHh
Confidence 888888766654 2221 23556666666655555555433
|
|
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=81.28 E-value=1.5 Score=46.04 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=33.6
Q ss_pred CceEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceee
Q 000145 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
|+|.|+|.++.||+. ..|.++.||++.+|+ .-++|+++.
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~kT~~~~ 41 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-VTKKTKTDF 41 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-Ccccccccc
Confidence 899999999999965 578899999999997 667788873
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=80.54 E-value=1.4 Score=46.98 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=34.4
Q ss_pred CCceEEEEEcCCcchhh-cCCCccceEeeccCCC----Ccccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQT-MGTTNAFCRLTIGNGP----PRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~ 2050 (2054)
.|.|+|+|.++.||.-. -|.++.|||+.+++.+ -++|||+.+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~ 58 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRK 58 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCC
Confidence 68999999999999421 6789999999999765 467888753
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2054 | ||||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 1e-04 |
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 226 bits (577), Expect = 1e-61
Identities = 109/630 (17%), Positives = 198/630 (31%), Gaps = 81/630 (12%)
Query: 2 QMSKSPSPEPQAHGFSSTSQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQERELI 61
Q + Q + A PE+ + Q + + +R
Sbjct: 67 QGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAE 126
Query: 62 TMRILTIAKAKKEARLLIG-SHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLK 120
++L A +A+P +L + A + L K E R
Sbjct: 127 PSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA 186
Query: 121 VLL-GGCIPPLLSLLKSES-TDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWD 178
++ + ++ +++ + +T + + L+ LS G+ G +P L +
Sbjct: 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN-----LSHHREGLLAIFKSGGIPALVN 241
Query: 179 QLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAAS 238
L + V L NL ++G A AGG+ +V LL+ N +
Sbjct: 242 MLG---SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 298
Query: 239 LLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVV 298
L L +S ++ SG +ALV ++ + + + L+ LS K A+V
Sbjct: 299 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIV 357
Query: 299 AADGVPVLIGAIVAPSKECMQ-----------GQRGQA-------------------LQG 328
A G+ L + PS+ +Q Q +
Sbjct: 358 EAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVT 417
Query: 329 HATRALANI-------------YGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVF 375
A L+N+ GG+ ALV + + P + L
Sbjct: 418 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH--- 474
Query: 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKK 435
+ + + ++V LL P + + + + + +L + A
Sbjct: 475 QDAEMAQNAVRLHYGLP-VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 533
Query: 436 VLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAV 495
L+ L+ A D + + T+ E G+ E+ E
Sbjct: 534 RLVQLLVRAHQDTQRRTSMGGTQQQFVE--------------------GVRMEEIVEACT 573
Query: 496 QLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE 555
+ IL ++ I IP VQLL + + + VAA VL L E +E
Sbjct: 574 GALHILAR-DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIE 631
Query: 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKL 585
+ GA LL S +A L ++
Sbjct: 632 AEGATAPLTELLHSRNEGVATYAAAVLFRM 661
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 3e-47
Identities = 100/622 (16%), Positives = 195/622 (31%), Gaps = 102/622 (16%)
Query: 195 TGALRNLCGDKDGYWR-ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPT 253
+ L++ + Y A L + + LL+ ++ + AA ++ +L
Sbjct: 128 SQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187
Query: 254 VIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAP 313
+ V A+V+ + ND+ + L LS + A+ + G+P L+ + +P
Sbjct: 188 MRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS-HHREGLLAIFKSGGIPALVNMLGSP 246
Query: 314 SKECMQGQRGQALQGHATRALANI-------------YGGMPALVVYLGELSQSPRLAAP 360
+ HA L N+ GG+ +V L + + A
Sbjct: 247 VDS---------VLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN--KTNVKFLAI 295
Query: 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG 420
D + LAY E K + LV +++ + + + + L
Sbjct: 296 TTDCLQILAYGNQ--ESKLIILAS-----GGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348
Query: 421 NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480
+ A + L +T + + + + +L L + G + L+
Sbjct: 349 CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLV 405
Query: 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKA--REVAAH 538
LLG A +++ LT +K + GGI LV+ + + E A
Sbjct: 406 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465
Query: 539 VLWILCCHSED---IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATIN 595
L L +D + V +P + LL + + L
Sbjct: 466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL------------- 512
Query: 596 QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQE 655
+ L A L ++G + LVQ+L ++++ Q
Sbjct: 513 --IRNLALCP-----------------ANHAPLREQG-----AIPRLVQLLVRAHQDTQR 548
Query: 656 YAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT 715
+ + + +EIV C AL L+R
Sbjct: 549 RTSMGGTQQQFV-----EGVRMEEIVEAC---------------TGALHILARDIH---- 584
Query: 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA 775
N++ + ++L + + A L L D + A + E + LT +L
Sbjct: 585 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLH 644
Query: 776 EGTSEGKKNASRALHQLLKHFP 797
A+ L ++ + P
Sbjct: 645 SRNEGVATYAAAVLFRMSEDKP 666
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 152 bits (384), Expect = 2e-37
Identities = 99/664 (14%), Positives = 211/664 (31%), Gaps = 65/664 (9%)
Query: 339 GGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVML 398
G + + + A + ++ L+ + DD R I L L
Sbjct: 105 GMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLI-----NYQDDAELATRAIP-ELTKL 158
Query: 399 LKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMAT-ADVREYLILSL 456
L ++++V + + L + + ++ + + +L
Sbjct: 159 LN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTL 217
Query: 457 TKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516
L G+ AI K GI L+++LG + +A+ + L + +K A+ AG
Sbjct: 218 HNLSHHREGL-LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG 276
Query: 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQD 576
G+ +V LL + K + L IL +++ + + ++G A + ++++ +
Sbjct: 277 GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL 336
Query: 577 ASAMALTKLI--------RAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDL 628
+ + K++ ++ + L L S + + L ++ D
Sbjct: 337 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL------SDA 390
Query: 629 VQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688
K L +LVQ+L S + AA +L++L + + +R +
Sbjct: 391 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450
Query: 689 --TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVA 746
+ + + + AL L+ + + + + ++KL S A
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510
Query: 747 ALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGN 805
L L+ P A + + + L ++L + ++ S
Sbjct: 511 GLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG---------------- 554
Query: 806 AQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEP 865
V+ + ++ V + +LAR + ++I
Sbjct: 555 -----TQQQFVEGVRMEEI----VEACTGALHILARDIHN--------RIVIRGLNTIPL 597
Query: 866 LVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVG 925
V L +Q A +L L D+ A + + L + ++HS + V
Sbjct: 598 FVQLLYSPIENIQRVAAGVLCELAQDKEAAE---AIEAEGATAPLTE-LLHSRNEGVATY 653
Query: 926 GAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERT 985
AA+L + E K Q L + P GY +
Sbjct: 654 AAAVLFRMS-EDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDD 712
Query: 986 AFQE 989
Sbjct: 713 PSYR 716
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 146 bits (369), Expect = 1e-35
Identities = 85/604 (14%), Positives = 176/604 (29%), Gaps = 89/604 (14%)
Query: 227 SDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVG-QNNDISVRASAADAL-E 284
+ A + + R P +D G Q ++ A + L
Sbjct: 74 NQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKH 133
Query: 285 ALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPAL 344
A+ + A +A +P L + + + A +
Sbjct: 134 AVVNLINYQDDAELATRAIPELTKLLNDEDQV---------VVNKAAVMVHQ-------- 176
Query: 345 VVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDN 404
LS+ + ++ +V ++ ++
Sbjct: 177 ------LSKKEASRHAIMRSPQMVS------------------------AIVRTMQNTND 206
Query: 405 KLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREV 464
+ +L + + + L+ ++ V + I +L L +
Sbjct: 207 VETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE 266
Query: 465 GIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQL 524
G A+ G+Q +++LL ++ + + IL +SK I A+GG LV +
Sbjct: 267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326
Query: 525 LEAGSQKA-REVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALT 583
+ + + + VL +L S + A VE AG + A L + L
Sbjct: 327 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQNCLWTLR 385
Query: 584 KL-----IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKG 638
L + + L+ LL D + +L + + + G
Sbjct: 386 NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN---LTCNNYKNKMMVCQVGG 442
Query: 639 LRSLVQVL--NSSNEENQEYAASVLADLFSMRQD---ICGSLATDEIVNPCMRLLTSNTQ 693
+ +LV+ + E+ E A L L S QD ++ + ++LL +
Sbjct: 443 IEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSH 502
Query: 694 MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA------------- 740
++ L N +G + L++L + D
Sbjct: 503 WPLIKATVGLIRN---LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 559
Query: 741 ---------AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQ 791
E AL L D + + + ++L ++ A+ L +
Sbjct: 560 VEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 619
Query: 792 LLKH 795
L +
Sbjct: 620 LAQD 623
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-32
Identities = 102/650 (15%), Positives = 207/650 (31%), Gaps = 53/650 (8%)
Query: 1275 SRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGN 1334
+R R+ AA + D S A P V L+ S+ L V
Sbjct: 88 TRAQRVRAA-MFPETLDEGMQIPSTQFDSAHPTNVQRLAEPSQ-----MLKHAVVNLINY 141
Query: 1335 TSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPL 1394
A ++ + L K+L+ + + + A + + A A + + + +
Sbjct: 142 QDDA----ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 197
Query: 1395 ISLMQSDLSIVV-ESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCA 1453
+ MQ+ + L + + + + LV ++ ++ +
Sbjct: 198 VRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITT 257
Query: 1454 LIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALCSTIAELFRILTNSSAIARSSDAA 1512
L L + K+ + AG + + LL L T L + + A+
Sbjct: 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 317
Query: 1513 KIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSH 1572
+ L + +++ + + L + + + + ++ L L PS
Sbjct: 318 GGPQAL-VNIMRTYTYEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDPSQ 374
Query: 1573 AIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPK 1632
+ Q L +L + + + + LVQL G +N+ A L ++ + K
Sbjct: 375 RLVQNCLWTLRNL--SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 432
Query: 1633 ---AVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVV----- 1684
V GGI + + +++ + + E A L ++ + + V
Sbjct: 433 NKMMVCQVGGIEALVRTVLRAGDRE--DITEPAICALRHLTSRHQDAEMAQNAVRLHYGL 490
Query: 1685 --LVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGR 1742
+VK+LH + A L+ + ++ + + G I L+ LL +
Sbjct: 491 PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD----- 545
Query: 1743 LLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASA 1802
+ +Q R E AL L++
Sbjct: 546 ---------------TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIR 590
Query: 1803 SVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNA 1862
++ + LL + ++ VA L + A+ G + ELL S N
Sbjct: 591 GLNTIPLFVQLLYSPI-ENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNE 648
Query: 1863 EVAGQAA-LLTKFLF-SNHTLQEYVSNELIRSLTAALERELWSTATINEE 1910
VA AA +L + ++ +S EL SL T + +
Sbjct: 649 GVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLD 698
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 2e-28
Identities = 97/587 (16%), Positives = 193/587 (32%), Gaps = 53/587 (9%)
Query: 1076 ATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIE 1135
R IP L LL ++ + AA + L + + V+ ++ + +
Sbjct: 147 LATRAIPELTKLLNDEDQVVVNKAAVMVHQL-SKKEASRHAIMRSPQMVSAIVRTMQN-T 204
Query: 1136 SDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAP 1195
+D S L L + + IP LV++L P
Sbjct: 205 NDVETARCTSG-----------TLHNLSHHREGLLAIFKSGGIPALVNMLG-SPVDSVLF 252
Query: 1196 PVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLI 1255
A+ L ++ + K+ + AGGL + L+ + T L + + N +
Sbjct: 253 H-AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESK 311
Query: 1256 RYEASLSSLNQLIAVLHLGS-RGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSA 1314
+ L+ ++ + + +R L L + K + + + L L+
Sbjct: 312 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 371
Query: 1315 ASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAE-LCF 1373
S+ ++ L L L+ T + LL +L ++L S+ + AA L
Sbjct: 372 PSQRLVQNCLWTLRNLSDAATKQE-----GMEGLLGTLVQLLGSDDI-NVVTCAAGILSN 425
Query: 1374 IMFGNAKIIANPIASECIQPLISLMQ--SDLSIVVESAVCA----FERLLDDEQQVELVE 1427
+ N K I+ L+ + D + E A+CA R D E V
Sbjct: 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVR 485
Query: 1428 GYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSA 1487
+ + ++V+L+ +H + LI+ + + G I
Sbjct: 486 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP-----------R 534
Query: 1488 LCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQ 1547
L ++L + + + + F+ ++ + + AL L +
Sbjct: 535 LV-------QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRI 587
Query: 1548 SLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQL 1607
+ L I + L SP IQ++ +L L + + I + A PL +L
Sbjct: 588 VIRGLN-----TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 642
Query: 1608 AGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQP 1654
+ A L ++S P+ E+ + + +P
Sbjct: 643 LHSRNEGVATYAAAVLFRMSEDKPQDYK-KRLSVELTSSLFRTEPMT 688
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 4e-27
Identities = 91/548 (16%), Positives = 176/548 (32%), Gaps = 70/548 (12%)
Query: 1007 ALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILF 1066
A ++ +S + + + + A+ + + A ++ L L
Sbjct: 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC--------TSGTLHNLS 221
Query: 1067 QDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAG 1126
+L+ IPAL +L S F A + +L +G +A+ +G +
Sbjct: 222 HHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNL-LLHQEGAKMAVRLAGGLQK 280
Query: 1127 LITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEK----LFEI----EDVRVGSTARKSI 1178
++ L+ + L L + ++ ++ A
Sbjct: 281 MVALLNK--------------------TNVKFLAITTDCLQILAYGNQESKLIILASGGP 320
Query: 1179 PLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTE 1238
LV+I+R R+L +++ +NK + EAGG+ AL +L+ Q +
Sbjct: 321 QALVNIMRT-YTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 378
Query: 1239 ATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIKD 1297
+ L + + E L + L+ +L AA L L + K
Sbjct: 379 NCLWTLRNLSDAATKQEGMEGLLGT---LVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 435
Query: 1298 SDLAGQAVPPLVDMLSAASECE--LEVALVALVKLTSGNT-SKACLLTDIDGNLLESLYK 1354
+ LV + A + E E A+ AL LTS + ++ L + K
Sbjct: 436 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK 495
Query: 1355 ILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSD------------- 1401
+L S L + L + A I L+ L+
Sbjct: 496 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 555
Query: 1402 ---------LSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVC 1452
+ +VE+ A L D ++ G + + L V+L+ +
Sbjct: 556 QQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 615
Query: 1453 ALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALCSTIAELFRILTNSSAIARSSDA 1511
L +L +D+ + + G +LL A LFR+ + + +
Sbjct: 616 VLCELAQDKEAAE-AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLS 674
Query: 1512 AKIVEPLF 1519
++ LF
Sbjct: 675 VELTSSLF 682
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 3e-26
Identities = 101/617 (16%), Positives = 191/617 (30%), Gaps = 72/617 (11%)
Query: 1412 AFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKA 1471
F LD+ Q+ + V+ RL E + + + +
Sbjct: 97 MFPETLDEGMQIPSTQFDSAHPTNVQ-------RLAEPSQMLKHAVVNLINYQDDAELAT 149
Query: 1472 GIIDNCLDLLPVA-PSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
I LL + + ++ ++ + ++V + + +Q +
Sbjct: 150 RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI-VRTMQNTNDVE 208
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QE 1589
L N+ + L+ + S I L++ L SP ++ L +LL QE
Sbjct: 209 TARCTSGTLHNLSHHREGLLAI--FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQE 266
Query: 1590 HFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWP---KAVADAGGIFEIAKV 1646
+ + + +V L + L+ ++ + +GG + +
Sbjct: 267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 326
Query: 1647 IIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVV------VLVKMLHSTLESTITVA 1700
+ + L + + VL L + K +V L L + +
Sbjct: 327 MRTYTYE---KLLWTTSRVLKV-LSVCSSN--KPAIVEAGGMQALGLHLTDPSQRLVQNC 380
Query: 1701 LNALLIHERTDASSAEQMTQAGVIDALLDLLRS---HQCEETSGRLLEALFNNGRIRQMK 1757
L L ++ +Q G++ L+ LL S + +G L NN + + M
Sbjct: 381 LWTLR---NLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 437
Query: 1758 VSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQH----EGLARASASVSACRALISL 1813
I L + +L E A AL L+ E A ++ L
Sbjct: 438 CQVGGIEALVRTVLR-AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKL 496
Query: 1814 LEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTK 1873
L S + + ++N +C N + E G I + +LL+ + + + ++
Sbjct: 497 LHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG- 554
Query: 1874 FLFSNHTLQEYVSNELIRSLTAALERELWSTATINE--EVLRTLHVIFMNFPKLHTSEAA 1931
+ E V E I L A V+R L+
Sbjct: 555 ---TQQQFVEGVRMEEIVEACTGA---LHILARDIHNRIVIRGLN--------------- 593
Query: 1932 TLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMK 1991
IP V L S E Q LC L D ++A+ A A L L+
Sbjct: 594 --TIPLFVQLLYSPIENIQRVAAGVLCEL-------AQDKEAAEAIEAEGATAPLTELLH 644
Query: 1992 TCPPSFHERADSLLHCL 2008
+ A ++L +
Sbjct: 645 SRNEGVATYAAAVLFRM 661
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-22
Identities = 88/630 (13%), Positives = 177/630 (28%), Gaps = 111/630 (17%)
Query: 863 IEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEV 922
I L L + + +KA ++ +L + + +M + A+ + +++ +E
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA--IMRSPQMVSAIVRTMQNTNDVET 209
Query: 923 RVGGAALL--ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRG 980
+ L + +E + G + L+ L S V
Sbjct: 210 ARCTSGTLHNLSHHREGLLAIFKS----GGIPALVNML----------GSPVDSVLFH-- 253
Query: 981 YMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLAS 1040
A+ L + + V AG L+ + L
Sbjct: 254 --------------------------AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 287
Query: 1041 YTSNPQAEFEDTEGIWISALFLAIL-FQDANIVLSPATMRIIPALALLLRSDEVIDRFFA 1099
+ + + I+ L IL + + L AL ++R+ +
Sbjct: 288 ---------TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 338
Query: 1100 AQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVL 1159
+ V S AI +G + L H+ + LV + L
Sbjct: 339 T-SRVLKVLSVCSSNKPAIVEAGGMQ---ALGLHLTDPSQRLV-------------QNCL 381
Query: 1160 EKLFEIEDVRVGSTA-RKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAE 1218
L + D + LV +L D A +L+ + + NK+++ +
Sbjct: 382 WTLRNLSDAATKQEGMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTCNNYKNKMMVCQ 439
Query: 1219 AGGLDALTKYLSLSPQDSTE-----ATITELFRILFSNPDLIRYEASLSSLNQLIAVLHL 1273
GG++AL + + + + L L ++ +LH
Sbjct: 440 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP 499
Query: 1274 GSRGARLSAARALHQLF--DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLT 1331
S + A L + N G A+P LV +L A + +
Sbjct: 500 PSHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGG---- 554
Query: 1332 SGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECI 1391
+ + + E+ I+ + I
Sbjct: 555 -------------------TQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTI 595
Query: 1392 QPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATV 1451
+ L+ S + + A L D++ E +E L L+ N +
Sbjct: 596 PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 655
Query: 1452 CALIKLGKDRTPRKLQMVKAGIIDNCLDLL 1481
L ++ +D+ Q K + L
Sbjct: 656 AVLFRMSEDKP----QDYKKRLSVELTSSL 681
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 99.0 bits (246), Expect = 8e-21
Identities = 88/698 (12%), Positives = 182/698 (26%), Gaps = 148/698 (21%)
Query: 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ 693
A + + L ++LN ++ AA ++ L + + ++V+ +R + +
Sbjct: 147 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 206
Query: 694 M-VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752
+ A ++ L LS ++ G + L+ + + A+ L NLL
Sbjct: 207 VETARCTSGTLHNLSH----HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262
Query: 753 SD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFV 811
V L + + +L + + + L L GN + + +
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY---------GNQESKLI 313
Query: 812 VLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLA 871
+L G + LV +
Sbjct: 314 IL---------ASGG------------------------------------PQALVNIMR 328
Query: 872 EG-PPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
L +L L + + + AL + S V+ L
Sbjct: 329 TYTYEKLLWTTSRVLKVLSVCSSNKP---AIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 385
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
+ K++ M+ L + LV ++ S DI V T
Sbjct: 386 NLSDAATKQEGMEGL---------LGTLVQLL------GSDDINVVTC------------ 418
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
A +L ++ N + V + G +EAL +
Sbjct: 419 ----------------AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT-- 460
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
I + + +P + LL A +
Sbjct: 461 -EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG-LIRNLAL 518
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRV 1170
+ GA+ L+ L L + + + +E VR+
Sbjct: 519 CPANHAPLREQGAIPRLVQL-------------LVRAHQDTQRRTSMGGTQQQFVEGVRM 565
Query: 1171 GSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
L I+ N++++ + + L
Sbjct: 566 EEIVEACTGAL----------------------HILARDIHNRIVIRGLNTIPLFVQLLY 603
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL- 1289
SP ++ + + L + + + + L +LH + G AA L ++
Sbjct: 604 -SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662
Query: 1290 FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVAL 1327
D L+ + L ++ L
Sbjct: 663 EDKPQDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIG 700
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 2e-57
Identities = 106/593 (17%), Positives = 198/593 (33%), Gaps = 80/593 (13%)
Query: 120 KVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ 179
L IP L LL E AA ++++S + I + +V +
Sbjct: 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK----KEASRHAIMRSPQMVSAIVRT 67
Query: 180 LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASL 239
+ N D G L NL ++G A ++GG+ +V +L S + A +
Sbjct: 68 MQNTN--DVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITT 124
Query: 240 LARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVA 299
L L+L + V +G ++ +V L+ ++ A D L+ L+ + ++K ++A
Sbjct: 125 LHNLLLHQEGAKMAVRLAGGLQKMVALL-NKTNVKFLAITTDCLQILAYGNQESKLIILA 183
Query: 300 ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAA 359
+ G L+ M+ + L +R L LS
Sbjct: 184 SGGPQALV--------NIMRTYTYEKLLWTTSRVLKV--------------LSVCSSNKP 221
Query: 360 PVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLY 419
+ + G + L + L ++ + + L + +L
Sbjct: 222 AIVEA-GGMQ------------------------ALGLHLT-DPSQRLVQNCLWTLRNLS 255
Query: 420 GNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLL 479
++ L+ L+ +V L+ L + + GI+ L
Sbjct: 256 DAA--TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313
Query: 480 ISLLGLSS--EQHQEYAVQLIAILTEQVDDSKWAITA---AGGIPPLVQLLEAGSQKARE 534
+ + + E E A+ + LT + +++ A A G+P +V+LL S
Sbjct: 314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 373
Query: 535 VAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATI 594
A L A + GA+P + LL Q ++M T+
Sbjct: 374 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME 433
Query: 595 NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQ 654
+ L + ++ + VQ+L S E Q
Sbjct: 434 EIV------------EGCTGALHILARDVHNRIVI----RGLNTIPLFVQLLYSPIENIQ 477
Query: 655 EYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707
AA VL +L + ++ ++ + P LL S + VAT +A L +S
Sbjct: 478 RVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 8e-52
Identities = 112/612 (18%), Positives = 192/612 (31%), Gaps = 129/612 (21%)
Query: 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLL-GGCIPPLLSLLKSES-TD 140
+A+P +L + A + L K E R ++ + ++ +++ + +
Sbjct: 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75
Query: 141 TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200
T + A L+ LS G+ G +P L L + V + L N
Sbjct: 76 TARCTAGTLHN-----LSHHREGLLAIFKSGGIPALVKMLG---SPVDSVLFYAITTLHN 127
Query: 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAV 260
L ++G A AGG+ +V LL+ N + L L +S ++ SG
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 261 KALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320
+ALV ++ + + + L+ LS K A+V A G+ L + PS+
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 242
Query: 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSG 380
L + L N LS + + ++
Sbjct: 243 -----LVQNCLWTLRN--------------LSDAATKQEGMEGLL--------------- 268
Query: 381 VDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIG 439
LV LL D+ V +++L N V + L+
Sbjct: 269 ------------GTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 315
Query: 440 LITMAT--ADVREYLILSLTKLCRR---EVGIWEAIGKREGIQLLISLLGLSSEQHQEYA 494
+ A D+ E I +L L R A+ G+ +++ LL S A
Sbjct: 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375
Query: 495 VQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAH---------------- 538
+ + + G IP LVQLL Q + +
Sbjct: 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 435
Query: 539 ------VLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSA 592
L IL R + +P F+ LL S Q +A L +L + ++A
Sbjct: 436 VEGCTGALHILARDVH-NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494
Query: 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEE 652
+ +G L ++L+S NE
Sbjct: 495 EA---------------------------------IEAEG-----ATAPLTELLHSRNEG 516
Query: 653 NQEYAASVLADL 664
YAA+VL +
Sbjct: 517 VATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 188 bits (479), Expect = 9e-51
Identities = 93/615 (15%), Positives = 186/615 (30%), Gaps = 106/615 (17%)
Query: 197 ALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVID 256
A+ NL +D A L + + LL+ ++ + AA ++ +L +
Sbjct: 1 AVVNLINYQDD---AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 257 SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKE 316
V A+V+ + ND+ A L LS + A+ + G+P L+ + +P
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDS 116
Query: 317 CMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFE 376
+ +A L N+ + + G L
Sbjct: 117 ---------VLFYAITTLHNLLLHQEGAKMAVRLA--------------GGL-------- 145
Query: 377 QKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKK 435
+V LL N + + L YGN + + +
Sbjct: 146 ----------------QKMVALLN-KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188
Query: 436 VLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAV 495
L+ ++ T + + + K+ AI + G+Q L L S++ + +
Sbjct: 189 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248
Query: 496 QLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE 555
+ L+ D + G + LVQLL + AA +L L C++ + V
Sbjct: 249 WTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305
Query: 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKV 615
G + A + + G D I
Sbjct: 306 QVGGIEALVRTVLRAG--------------------------------DREDITEPAICA 333
Query: 616 LGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL 675
L H+ + + ++ Q + GL +V++L+ + A L ++ L
Sbjct: 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 393
Query: 676 ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT------------------NK 717
+ ++LL Q +++ + N+
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 453
Query: 718 MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG 777
+ + ++L + + A L L D + A + E + LT +L
Sbjct: 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR 513
Query: 778 TSEGKKNASRALHQL 792
A+ L ++
Sbjct: 514 NEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 148 bits (376), Expect = 2e-37
Identities = 88/550 (16%), Positives = 183/550 (33%), Gaps = 58/550 (10%)
Query: 394 ILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMAT-ADVREY 451
L LL ++++V + + L + + ++ + +
Sbjct: 21 ELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79
Query: 452 LILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511
+L L G+ AI K GI L+ +LG + YA+ + L + +K A
Sbjct: 80 TAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 138
Query: 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGG 571
+ AGG+ +V LL + K + L IL +++ + + ++G A + ++++
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 198
Query: 572 PKG-QDASAMALTKL-------IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMA 623
+ ++ L L ++ + L L S + + L + L+ A
Sbjct: 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN-LSDA 257
Query: 624 LQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNP 683
+ +G L +LVQ+L S + AA +L++L + +
Sbjct: 258 ATKQEGMEG-----LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312
Query: 684 CMRLL--TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAA 741
+R + + + + + AL L+ + + + + ++KL S
Sbjct: 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 372
Query: 742 ETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGD 800
A L L+ P A + + + L ++L + ++ S Q
Sbjct: 373 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ------- 425
Query: 801 VLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVP 860
V + +LAR +
Sbjct: 426 ------------------FVEGVRMEEIVEGCTGALHILARDVHN--------RIVIRGL 459
Query: 861 SSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSL 920
++I V L +Q A +L L D+ A + + L + ++HS +
Sbjct: 460 NTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE---AIEAEGATAPLTE-LLHSRNE 515
Query: 921 EVRVGGAALL 930
V AA+L
Sbjct: 516 GVATYAAAVL 525
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 2e-35
Identities = 68/489 (13%), Positives = 150/489 (30%), Gaps = 47/489 (9%)
Query: 339 GGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVML 398
+P L L + + A ++ L+ +K + Q+ +V
Sbjct: 17 RAIPELTKLLN--DEDQVVVNKAAVMVHQLS-------KKEASRHAIMRSPQMVSAIVRT 67
Query: 399 LKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTK 458
++ ++ + +L + + + L+ ++ V Y I +L
Sbjct: 68 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127
Query: 459 LCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGI 518
L + G A+ G+Q +++LL ++ + + IL +SK I A+GG
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDAS 578
LV ++ + + + + + + AG + A L +
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247
Query: 579 AMALTKL-----IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633
L L + + L+ LL D + +L + + +
Sbjct: 248 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN---LTCNNYKNKMMV 304
Query: 634 AANKGLRSLVQVL--NSSNEENQEYAASVLADLFS---MRQDICGSLATDEIVNPCMRLL 688
G+ +LV+ + E+ E A L L S + ++ + ++LL
Sbjct: 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL 364
Query: 689 TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA-------- 740
+ ++ L N +G + L++L + D
Sbjct: 365 HPPSHWPLIKATVGLIRN---LALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 421
Query: 741 --------------AETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNAS 786
E AL L D + + + ++L ++ A+
Sbjct: 422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA 481
Query: 787 RALHQLLKH 795
L +L +
Sbjct: 482 GVLCELAQD 490
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 2e-35
Identities = 94/579 (16%), Positives = 200/579 (34%), Gaps = 71/579 (12%)
Query: 1296 KDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKI 1355
D++LA +A+P L +L+ + + A V + +L+ S+ ++ ++ ++ +
Sbjct: 10 DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM--RSPQMVSAIVRT 67
Query: 1356 LSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFER 1415
+ + + +E R A + + + + S I L+ ++ S + V+ A+
Sbjct: 68 MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127
Query: 1416 LL-DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGII 1474
LL E V + +V L++ TN + + T L L KL ++ +G
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 1475 DNCLDLL-PVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQH 1533
++++ L T + + ++L+ S+ + A ++ L + L P L
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL--VQ 245
Query: 1534 SALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQ 1592
+ L L N+ + + ++ L+ L S + +L++L +
Sbjct: 246 NCLWTLRNLSDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301
Query: 1593 QDITTKNAVVPLVQLAGIGILN--LQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQD 1650
+ + LV+ + + A+ AL +++ +A E+A+ ++
Sbjct: 302 MMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA--------EMAQNAVRL 353
Query: 1651 DPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERT 1710
P V+VK+LH + A L+ +
Sbjct: 354 HYGLP----------------------------VVVKLLHPPSHWPLIKATVGLIRNLAL 385
Query: 1711 DASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYL 1770
++ + + G I L+ LL + + +Q
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQD--------------------TQRRTSMGGTQQQ 425
Query: 1771 LDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICAL 1830
R E AL L++ ++ + LL + ++ VA L
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVL 484
Query: 1831 QNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAA 1869
+ A+ G + ELL S N VA AA
Sbjct: 485 CELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 6e-30
Identities = 96/611 (15%), Positives = 183/611 (29%), Gaps = 89/611 (14%)
Query: 501 LTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560
+ ++ A A IP L +LL Q AA ++ L A + S V
Sbjct: 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61
Query: 561 PAFLWLLKSGG-PKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHV 619
A + +++ + +A L L + K
Sbjct: 62 SAIVRTMQNTNDVETARCTAGTLH-----------------NLSHHREGLLAIFK----- 99
Query: 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE 679
+ G+ +LV++L S + YA + L +L ++ ++
Sbjct: 100 ----------------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG 143
Query: 680 IVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSID 739
+ + LL + L L+ +K+ +A G + L+ + +T + +
Sbjct: 144 GLQKMVALLNKTNVKFLAITTDCLQILAY---GNQESKLIILASGGPQALVNIMRTYTYE 200
Query: 740 AA-ETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV 798
T L L ++ + AL L + + +N L L
Sbjct: 201 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260
Query: 799 GDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAE 858
+ ++G ++ TLV L + D+N V A +++ L +
Sbjct: 261 QEGMEG------LLGTLVQLLGSDDINV--VTCAAGILSNLTCNNYKN-------KMMVC 305
Query: 859 VPSSIEPLVCCLAEGPPP--LQDKAIEILSRLC-GDQPAVLGDFLMARSSSIGALADRIM 915
IE LV + + + AI L L Q A + + + + ++
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK-LL 364
Query: 916 HSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEV 975
H S + LI + I LV ++ + D +
Sbjct: 365 HPPSHWPLIKATVGLIRNLALCPANHAPLREQGA-----IPRLVQLL----VRAHQDTQR 415
Query: 976 RTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALS 1035
RT G ++ + ++ + G T AL +L N + + +
Sbjct: 416 RTSMGGTQQQFVEGVRMEEI-----VEGCTGALHILARDVH----NRIVIRGLNTIPLFV 466
Query: 1036 DKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVID 1095
L S ++A L L QD + L LL S
Sbjct: 467 QLLYS---------PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGV 517
Query: 1096 RFFAAQAMASL 1106
+AA + +
Sbjct: 518 ATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 3e-27
Identities = 96/577 (16%), Positives = 189/577 (32%), Gaps = 56/577 (9%)
Query: 1059 ALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAI 1118
A+ I +QD + R IP L LL ++ + AA + L +
Sbjct: 1 AVVNLINYQDDAEL----ATRAIPELTKLLNDEDQVVVNKAAVMVHQL-SKKEASRHAIM 55
Query: 1119 ANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSI 1178
+ V+ ++ + + L L + + I
Sbjct: 56 RSPQMVSAIVRTMQNTNDVETARCTAG------------TLHNLSHHREGLLAIFKSGGI 103
Query: 1179 PLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTE 1238
P LV +L P A+ L ++ + K+ + AGGL + L+ +
Sbjct: 104 PALVKMLG-SPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 161
Query: 1239 ATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGS-RGARLSAARALHQLFDAENIKD 1297
T L + + N + + L+ ++ + + +R L L + K
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221
Query: 1298 SDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILS 1357
+ + + L L+ S+ ++ L L L+ T + LL +L ++L
Sbjct: 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE-----GMEGLLGTLVQLLG 276
Query: 1358 SNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQ--SDLSIVVESAVCAFE 1414
S+ + AA L + N K I+ L+ + D + E A+CA
Sbjct: 277 SDDI-NVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALR 335
Query: 1415 RL----LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVK 1470
L + E V + + ++V+L+ +H + LI+ + +
Sbjct: 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRE 395
Query: 1471 AGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
G I L ++L + + + + F+ ++ + +
Sbjct: 396 QGAIP-----------RLV-------QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 437
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEH 1590
G AL L + + L I + L SP IQ++ +L L +
Sbjct: 438 GCTGALHILARDVHNRIVIRGLN-----TIPLFVQLLYSPIENIQRVAAGVLCELAQDKE 492
Query: 1591 FQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKIS 1627
+ I + A PL +L + A L ++S
Sbjct: 493 AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-22
Identities = 85/505 (16%), Positives = 162/505 (32%), Gaps = 61/505 (12%)
Query: 1007 ALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILF 1066
A ++ +S + + + + A+ + + A +A L L
Sbjct: 37 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC--------TAGTLHNLS 88
Query: 1067 QDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAG 1126
+L+ IPAL +L S F+A + +L +G +A+ +G +
Sbjct: 89 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQK 147
Query: 1127 LITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEI----EDVRVGSTARKSIPLLV 1182
++ L + + + + L + ++ ++ A LV
Sbjct: 148 MVAL---LNKTNVKFL-------------AITTDCLQILAYGNQESKLIILASGGPQALV 191
Query: 1183 DILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATIT 1242
+I+R R+L ++ +NK + EAGG+ AL +L+ Q + +
Sbjct: 192 NIMRT-YTYEKLLWTTSRVLK-VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249
Query: 1243 ELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIKDSDLA 1301
L + + E L L+ +L AA L L + K
Sbjct: 250 TLRNLSDAATKQEGMEGLLG---TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ 306
Query: 1302 GQAVPPLVDMLSAASECE--LEVALVALVKLTSGNTSKACLLTDI-DGNLLESLYKILSS 1358
+ LV + A + E E A+ AL LTS + + L + K+L
Sbjct: 307 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 366
Query: 1359 NSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQS------------------ 1400
S L + L + A I L+ L+
Sbjct: 367 PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF 426
Query: 1401 ----DLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIK 1456
+ +VE A L D ++ G + + L V+L+ + L +
Sbjct: 427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 486
Query: 1457 LGKDRTPRKLQMVKAGIIDNCLDLL 1481
L +D+ + + G +LL
Sbjct: 487 LAQDKEAAE-AIEAEGATAPLTELL 510
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 99.5 bits (248), Expect = 2e-21
Identities = 81/505 (16%), Positives = 159/505 (31%), Gaps = 52/505 (10%)
Query: 1538 ALVNIL-EKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDIT 1596
A+VN++ + + + + I L L + ++ L +E + I
Sbjct: 1 AVVNLINYQDDAELATR-----AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM 55
Query: 1597 TKNAVVPLV--QLAGIGILNLQQTAVKALEKISTSW--PKAVADAGGIFEIAKVIIQDDP 1652
+V + + + + L +S A+ +GGI + K++
Sbjct: 56 RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVD 115
Query: 1653 QPPHSLWESAALVLSNVLRFNTEYYFKVP----VVVLVKMLHSTLESTITVALNALLIHE 1708
S+ A L N+L V + +V +L+ T + + + L I
Sbjct: 116 ----SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171
Query: 1709 RTDASSAEQMTQAGVIDALLDLLRSHQCE---ETSGRLLEALFNNGRIRQMKVSKYAIAP 1765
+ S + +G AL++++R++ E T+ R+L+ L + V +
Sbjct: 172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 231
Query: 1766 LSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMV 1825
L +L DP S+ L +LS L+ LL +
Sbjct: 232 LGLHLTDP---SQRLVQNCLWTLRNLSDAATKQEGMEG--LLGTLVQLLGSDDI-NVVTC 285
Query: 1826 AICALQNFVMCSRTNRRAVAEAGGILVVQELLL--STNAEVAGQAALLTKFLFSNHTLQE 1883
A L N + N+ V + GGI + +L ++ A + L S H E
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345
Query: 1884 YVSNELIRS-----LTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHL 1938
N + + L S + + + + + + P H IP L
Sbjct: 346 MAQNAVRLHYGLPVVVKLLHPP--SHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRL 402
Query: 1939 VGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKS---------------QAMIAAEAI 1983
V L + Q + ++ + + I
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462
Query: 1984 PILQMLMKTCPPSFHERADSLLHCL 2008
P+ L+ + + A +L L
Sbjct: 463 PLFVQLLYSPIENIQRVAAGVLCEL 487
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 98.7 bits (246), Expect = 4e-21
Identities = 80/515 (15%), Positives = 158/515 (30%), Gaps = 56/515 (10%)
Query: 1485 PSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILE 1544
+ + ++ ++ + ++V + +Q + L N+
Sbjct: 31 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR-TMQNTNDVETARCTAGTLHNLSH 89
Query: 1545 KPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QEHFQQDITTKNAVVP 1603
+ L+ + S I L+ L SP ++ L +LL QE + + +
Sbjct: 90 HREGLL--AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQK 147
Query: 1604 LVQLAGIGILNLQQTAVKALEKISTSWP---KAVADAGGIFEIAKVIIQDDPQPPHSLWE 1660
+V L + L+ ++ + +GG + ++ L
Sbjct: 148 MVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM---RTYTYEKLLW 204
Query: 1661 SAALVLSNVLRFNTEYYFKV----PVVVLVKMLHSTLESTITVALNALLIHERTDASSAE 1716
+ + VL L + + + L L + + L L ++ +
Sbjct: 205 TTSRVLKV-LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR---NLSDAATK 260
Query: 1717 QMTQAGVIDALLDLLRS---HQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDP 1773
Q G++ L+ LL S + +G L NN + + M I L + +L
Sbjct: 261 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 320
Query: 1774 QTRSESGKLLAALALGDLS----QHEGLARASASVSACRALISLLEDQSTDEMKMVAICA 1829
R E A AL L+ + E A ++ LL S + +
Sbjct: 321 GDR-EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379
Query: 1830 LQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNEL 1889
++N +C N + E G I + +LL+ + + + ++ + E V E
Sbjct: 380 IRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG----TQQQFVEGVRMEE 434
Query: 1890 IRSLTAALERELWSTATINEEVLRTLHVI-------FMNFPKLHTSEAATLC-------- 1934
I L + N V+R L+ I + + A LC
Sbjct: 435 IVEGCTGALHIL-ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA 493
Query: 1935 ---------IPHLVGALKSGSEAAQGSVLDTLCLL 1960
L L S +E L +
Sbjct: 494 AEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 97.2 bits (242), Expect = 1e-20
Identities = 85/610 (13%), Positives = 178/610 (29%), Gaps = 115/610 (18%)
Query: 863 IEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEV 922
I L L + + +KA ++ +L + + +M + A+ + +++ +E
Sbjct: 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA--IMRSPQMVSAIVRTMQNTNDVET 76
Query: 923 RVGGAALL--ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRG 980
A L + +E + G + L+ L S V
Sbjct: 77 ARCTAGTLHNLSHHREGLLAIFKS----GGIPALVKML----------GSPVDSVLFY-- 120
Query: 981 YMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLAS 1040
A+ L + + V AG L+ + L
Sbjct: 121 --------------------------AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 154
Query: 1041 YTSNPQAEFEDTEGIWISALFLAIL-FQDANIVLSPATMRIIPALALLLRSDEVIDRFFA 1099
+ + + I+ L IL + + L AL ++R+ +
Sbjct: 155 ---------TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 205
Query: 1100 AQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVL 1159
+ V S AI +G + L + P + ++
Sbjct: 206 T-SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--------------------PSQRLV 244
Query: 1160 EK----LFEIEDVRVGSTARKS-IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKL 1214
+ L + D + + LV +L D A +L+ + + NK+
Sbjct: 245 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGS--DDINVVTCAAGILSNLTCNNYKNKM 302
Query: 1215 IMAEAGGLDALTKYLSLS--PQDSTEATITELFRILFSNPDLIRYEASLSSLN---QLIA 1269
++ + GG++AL + + + +D TE I L + + + + ++ ++
Sbjct: 303 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 362
Query: 1270 VLHLGSRGARLSAARALHQLF--DAENIKDSDLAGQAVPPLVDMLSAASECELEVALVAL 1327
+LH S + A L + N G A+P LV +L A + +
Sbjct: 363 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGG 421
Query: 1328 VKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIA 1387
+ + E+ I+ +
Sbjct: 422 TQQQFVEGVR-----------------------MEEIVEGCTGALHILARDVHNRIVIRG 458
Query: 1388 SECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLV 1447
I + L+ S + + A L D++ E +E L L+ N +
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVA 518
Query: 1448 EATVCALIKL 1457
L ++
Sbjct: 519 TYAAAVLFRM 528
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 2e-18
Identities = 85/609 (13%), Positives = 161/609 (26%), Gaps = 123/609 (20%)
Query: 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ 693
A + + L ++LN ++ AA ++ L + + ++V+ +R + +
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73
Query: 694 M-VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752
+ A +A L LS ++ G + L+K+ + A+ L NLL
Sbjct: 74 VETARCTAGTLHNLSH----HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 129
Query: 753 SD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFV 811
V L + + +L + + + L L GN + + +
Sbjct: 130 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY---------GNQESKLI 180
Query: 812 VLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLA 871
+L G + LV +
Sbjct: 181 IL---------ASGG------------------------------------PQALVNIMR 195
Query: 872 EG-PPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
L +L L + + + AL + S V+ L
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNKP---AIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252
Query: 931 ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEA 990
+ K+ + G L L+ L S DI V T
Sbjct: 253 NLSDAATKQ-----EGMEGLLGTLVQLL----------GSDDINVVTC------------ 285
Query: 991 DDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFE 1050
A +L ++ N + V + G +EAL +
Sbjct: 286 ----------------AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT-- 327
Query: 1051 DTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
I + + + +P + LL A +
Sbjct: 328 -EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG-LIRNLAL 385
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEV---------VLEK 1161
+ GA+ L+ L+ DT ++ + L
Sbjct: 386 CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHI 445
Query: 1162 LFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGG 1221
L R+ +IPL V +L VA +L ++ + + G
Sbjct: 446 LARDVHNRIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVLCELAQDKE-AAEAIEAEGA 502
Query: 1222 LDALTKYLS 1230
LT+ L
Sbjct: 503 TAPLTELLH 511
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 74 EARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSL 133
R++I +PLF+ +L S + A L L +D++ + G PL L
Sbjct: 451 HNRIVIRG-LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTEL 509
Query: 134 LKSESTDTRKAAAEALYEVS 153
L S + AA L+ +S
Sbjct: 510 LHSRNEGVATYAAAVLFRMS 529
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 3e-55
Identities = 116/659 (17%), Positives = 202/659 (30%), Gaps = 132/659 (20%)
Query: 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLL-GGCIPPLLSLLKS-ESTD 140
+A+P +L + A + L K E R ++ + ++ +++ +
Sbjct: 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 72
Query: 141 TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200
T + A L+ LS G+ G +P L L + V + L N
Sbjct: 73 TARCTAGTLHN-----LSHHREGLLAIFKSGGIPALVKMLG---SPVDSVLFYAITTLHN 124
Query: 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAV 260
L ++G A AGG+ +V LL+ N + L L +S ++ SG
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184
Query: 261 KALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320
+ALV ++ + + + L+ LS K A+V A G+ L + PS+
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 239
Query: 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSG 380
L + L N LS + + ++
Sbjct: 240 -----LVQNCLWTLRN--------------LSDAATKQEGMEGLL--------------- 265
Query: 381 VDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIG 439
LV LL D+ V +++L N V + L+
Sbjct: 266 ------------GTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 312
Query: 440 LITMAT--ADVREYLILSLTKLCRR---EVGIWEAIGKREGIQLLISLLGLSSEQHQEYA 494
+ A D+ E I +L L R A+ G+ +++ LL S A
Sbjct: 313 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372
Query: 495 VQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAR--------------------- 533
+ + + G IP LVQLL Q +
Sbjct: 373 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 432
Query: 534 -EVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSA 592
E L IL R + +P F+ LL S Q +A L +L + ++A
Sbjct: 433 VEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 491
Query: 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEE 652
+ +G L ++L+S NE
Sbjct: 492 EA---------------------------------IEAEG-----ATAPLTELLHSRNEG 513
Query: 653 NQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTK 711
YAA+VL + + + E+ + L + + L ++
Sbjct: 514 VATYAAAVLFRMSEDKPQDYKKRLSVELTSS---LFRTEPMAWNETADLGLDIGAQGEP 569
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 3e-53
Identities = 92/568 (16%), Positives = 182/568 (32%), Gaps = 63/568 (11%)
Query: 32 DDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFIS 91
DD E + + + L+ + + ++K + ++ Q + +
Sbjct: 7 DDAELATRAIPELTKLLNDE--DQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVSAIVR 63
Query: 92 ILRSGTPLAKV-NVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
+++ + A TL L + L + G IP L+ +L S A L+
Sbjct: 64 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 123
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
+ + M + G + + LN N + T L+ L
Sbjct: 124 NLLLH---QEGAKMAV-RLAGGLQKMVALLNKTNVK---FLAITTDCLQILAYGNQESKL 176
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
L +GG +V ++ + S + +++ + P ++++G ++AL +
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 236
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
+ V+ + L L + S A K + L+ + + + A
Sbjct: 237 SQRLVQ----NCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD---------INVVTCA 283
Query: 331 TRALANI-------------YGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQ 377
L+N+ GG+ ALV + + P + L E
Sbjct: 284 AGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM 343
Query: 378 KSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVL 437
+ + ++V LL P + + + + + +L + A L
Sbjct: 344 ---AQNAVRLHYGLP-VVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 399
Query: 438 IGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQL 497
+ L+ A D + + T + G+ E+ E
Sbjct: 400 VQLLVRAHQDTQRRTSMGGT--------------------QQQFVEGVRMEEIVEGCTGA 439
Query: 498 IAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESA 557
+ IL ++ I IP VQLL + + + VAA VL L E +E+
Sbjct: 440 LHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-AEAIEAE 497
Query: 558 GAVPAFLWLLKSGGPKGQDASAMALTKL 585
GA LL S +A L ++
Sbjct: 498 GATAPLTELLHSRNEGVATYAAAVLFRM 525
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-47
Identities = 103/596 (17%), Positives = 189/596 (31%), Gaps = 76/596 (12%)
Query: 200 NLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGA 259
NL +D A L + + LL+ ++ + AA ++ +L +
Sbjct: 1 NLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 57
Query: 260 VKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQ 319
V A+V+ + ND+ A L L S + A+ + G+P L+ + +P
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDS--- 113
Query: 320 GQRGQALQGHATRALANI-------------YGGMPALVVYLGELSQSPRLAAPVADIIG 366
+ +A L N+ GG+ +V L + + A D +
Sbjct: 114 ------VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN--KTNVKFLAITTDCLQ 165
Query: 367 ALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQ 426
LAY E K + LV +++ + + + + L
Sbjct: 166 ILAYGNQ--ESKLIILAS-----GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218
Query: 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486
+ A + L +T + + + + +L L + G + L+ LLG
Sbjct: 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLVQLLGSD 275
Query: 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGS--QKAREVAAHVLWILC 544
A +++ LT +K + GGI LV+ + + E A L L
Sbjct: 276 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 335
Query: 545 CHS---EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLI--------RAADSAT 593
E + V +P + LL + + L + + +
Sbjct: 336 SRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGA 395
Query: 594 INQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN----------------- 636
I +L+ LL+ ++ +
Sbjct: 396 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRG 455
Query: 637 -KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMV 695
+ VQ+L S E Q AA VL +L + ++ ++ + P LL S + V
Sbjct: 456 LNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGV 514
Query: 696 ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751
AT +A L +S Y V+ L +T + ETA L
Sbjct: 515 ATYAAAVLFRMSED------KPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIG 564
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 2e-38
Identities = 100/618 (16%), Positives = 214/618 (34%), Gaps = 73/618 (11%)
Query: 1297 DSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKIL 1356
D++LA +A+P L +L+ + + A V + +L+ S+ ++ ++ ++ + +
Sbjct: 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM--RSPQMVSAIVRTM 65
Query: 1357 SSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERL 1416
+ + +E R A + + + + S I L+ ++ S + V+ A+ L
Sbjct: 66 QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL 125
Query: 1417 L-DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIID 1475
L E V + +V L++ TN + + T L L KL ++ +G
Sbjct: 126 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 185
Query: 1476 NCLDLL-PVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHS 1534
++++ L T + + ++L+ S+ + A ++ L + L P L +
Sbjct: 186 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL--VQN 243
Query: 1535 ALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQ 1593
L L N+ + + ++ L+ L S + +L++L +
Sbjct: 244 CLWTLRNLSDAATKQEGM----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299
Query: 1594 DITTKNAVVPLVQL--AGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDD 1651
+ + LV+ ++ + A+ AL +++ +A E+A+ ++
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA--------EMAQNAVRLH 351
Query: 1652 PQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTD 1711
P +VK+LH + A L+ +
Sbjct: 352 YGLPV----------------------------VVKLLHPPSHWPLIKATVGLIRNLALC 383
Query: 1712 ASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLL 1771
++ + + G I L+ LL + + +Q
Sbjct: 384 PANHAPLREQGAIPRLVQLLVRAHQD--------------------TQRRTSMGGTQQQF 423
Query: 1772 DPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQ 1831
R E AL L++ ++ + LL + ++ VA L
Sbjct: 424 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLC 482
Query: 1832 NFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSN--HTLQEYVSNEL 1889
+ A+ G + ELL S N VA AA + + + ++ +S EL
Sbjct: 483 ELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVEL 541
Query: 1890 IRSLTAALERELWSTATI 1907
SL TA +
Sbjct: 542 TSSLFRTEPMAWNETADL 559
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 135 bits (340), Expect = 2e-32
Identities = 84/578 (14%), Positives = 180/578 (31%), Gaps = 46/578 (7%)
Query: 1178 IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDST 1237
IP L +L + A ++ Q+ + IM + A+ + + + T
Sbjct: 16 IPELTKLLND--EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 73
Query: 1238 EATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIK 1296
L + + + + L+ +L A LH L E K
Sbjct: 74 ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133
Query: 1297 DSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKIL 1356
+ + +V +L+ + L + L L GN ++ G ++L I+
Sbjct: 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG--PQALVNIM 191
Query: 1357 SSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERL 1416
+ + +L + + ++ + + + +Q L + +V++ + L
Sbjct: 192 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251
Query: 1417 LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDN 1476
D + E +EG ++ LV+L+ + +V L L + K+ + + G I+
Sbjct: 252 SDAATKQEGMEG--LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309
Query: 1477 CLDLLPVAPS------ALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDF--- 1527
+ + A + L + + + + +L P
Sbjct: 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 369
Query: 1528 --SLWG----------------QHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLES 1569
+ G + A+ LV +L + + S
Sbjct: 370 IKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDT--QRRTSMGGTQQQFVEGV 427
Query: 1570 PSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTS 1629
I + T L L H + I N + VQL I N+Q+ A L +++
Sbjct: 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
Query: 1630 --WPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKV----PVV 1683
+A+ G + +++ + + AA VL + + Y K
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEG----VATYAAAVLFRMSEDKPQDYKKRLSVELTS 543
Query: 1684 VLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQA 1721
L + T + L+ E + ++
Sbjct: 544 SLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRS 581
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 2e-30
Identities = 101/624 (16%), Positives = 201/624 (32%), Gaps = 60/624 (9%)
Query: 1066 FQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVA 1125
+QD + R IP L LL ++ + AA + L + + V+
Sbjct: 5 YQDDAEL----ATRAIPELTKLLNDEDQVVVNKAAVMVHQL-SKKEASRHAIMRSPQMVS 59
Query: 1126 GLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDIL 1185
++ + + L L + + IP LV +L
Sbjct: 60 AIVRTMQNTNDVETARCTAG------------TLHNLSHHREGLLAIFKSGGIPALVKML 107
Query: 1186 RPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELF 1245
A+ L ++ + K+ + AGGL + L+ + T L
Sbjct: 108 G--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 165
Query: 1246 RILFSNPDLIRYEASLSSLNQLIAVLHLGS-RGARLSAARALHQLFDAENIKDSDLAGQA 1304
+ + N + + L+ ++ + + +R L L + K + +
Sbjct: 166 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG 225
Query: 1305 VPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLEL 1364
+ L L+ S+ ++ L L L+ T + LL +L ++L S+ +
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE-----GMEGLLGTLVQLLGSDDI-NV 279
Query: 1365 KRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQ--SDLSIVVESAVCAFERL----L 1417
AA L + N K I+ L+ + D + E A+CA L
Sbjct: 280 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339
Query: 1418 DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNC 1477
+ E V + + ++V+L+ +H + LI+ + + G I
Sbjct: 340 EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP-- 397
Query: 1478 LDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQ 1537
L +L + + + + F+ ++ + + G AL
Sbjct: 398 ---------RLVQ-------LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 441
Query: 1538 ALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITT 1597
L + + L I + L SP IQ++ +L L + + I
Sbjct: 442 ILARDVHNRIVIRGLN-----TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA 496
Query: 1598 KNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHS 1657
+ A PL +L + A L ++S P+ + E+ + + +P
Sbjct: 497 EGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSV-ELTSSLFRTEPMA--- 552
Query: 1658 LWESAALVLSNVLRFNTEYYFKVP 1681
E+A L L + Y +
Sbjct: 553 WNETADLGLDIGAQGEPLGYRQDD 576
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 3e-30
Identities = 99/601 (16%), Positives = 182/601 (30%), Gaps = 89/601 (14%)
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
A A IP L +LL Q AA ++ L A + S V A + +++
Sbjct: 9 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT 68
Query: 571 G-PKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLV 629
+ +A L L + K
Sbjct: 69 NDVETARCTAGTL-----------------HNLSHHREGLLAIFK--------------- 96
Query: 630 QKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLT 689
+ G+ +LV++L S + YA + L +L ++ ++ + + LL
Sbjct: 97 ------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN 150
Query: 690 SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAA-ETAVAAL 748
+ L L+ +K+ +A G + L+ + +T + + T L
Sbjct: 151 KTNVKFLAITTDCLQILAY---GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207
Query: 749 ANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQC 808
L ++ + AL L + + +N L L + ++G
Sbjct: 208 KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG---- 263
Query: 809 RFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVC 868
++ TLV L + D+N V A +++ L + IE LV
Sbjct: 264 --LLGTLVQLLGSDDINV--VTCAAGILSNLTCNNYKN-------KMMVCQVGGIEALVR 312
Query: 869 CLAEGPPP--LQDKAIEILSRLC-GDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVG 925
+ + + AI L L Q A + + + + +++H S +
Sbjct: 313 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV-KLLHPPSHWPLIK 371
Query: 926 GAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERT 985
LI L G + L+ L + D + RT G ++
Sbjct: 372 ATVGLIRNLALCPAN-HAPLREQGAIPRLVQLL--------VRAHQDTQRRTSMGGTQQQ 422
Query: 986 AFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNP 1045
+ ++ + G T AL +L N + + + L S N
Sbjct: 423 FVEGVRMEEI-----VEGCTGALHILARDVH----NRIVIRGLNTIPLFVQLLYSPIENI 473
Query: 1046 QAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMAS 1105
Q +A L L QD + L LL S +AA +
Sbjct: 474 QRV---------AAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 524
Query: 1106 L 1106
+
Sbjct: 525 M 525
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-28
Identities = 81/644 (12%), Positives = 186/644 (28%), Gaps = 61/644 (9%)
Query: 1021 NNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRI 1080
+ + A+ L+ L + + + + ++A+ + ++
Sbjct: 6 QDDAELATRAIPELTKLLNDEDQVVVNKA--------AVMVHQLSKKEASRHAIMRSPQM 57
Query: 1081 IPAL-ALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTP 1139
+ A+ + +++V A + +L S + +LAI SG + L+ ++G
Sbjct: 58 VSAIVRTMQNTNDVETARCTAGTLHNL--SHHREGLLAIFKSGGIPALVKMLGSPVDSVL 115
Query: 1140 NLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAV 1199
+ L E ++ + +V +L +
Sbjct: 116 FYAI------------TTLHNLLLHQEGAKMAVRLAGGLQKMVALLN--KTNVKFLAITT 161
Query: 1200 RLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEA 1259
L + G+ +KLI+ +GG AL + + T + + ++L
Sbjct: 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIV 221
Query: 1260 SLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECE 1319
+ L L S+ + L L ++ + + LV +L +
Sbjct: 222 EAGGMQALGLHLTDPSQRLVQNCLWTLRNL--SDAATKQEGMEGLLGTLVQLLGSDDINV 279
Query: 1320 LEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKIL-SSNSSLELKRNAA----ELCFI 1374
+ A L LT N ++ + G +E+L + + + ++ A L
Sbjct: 280 VTCAAGILSNLTCNNYKNKMMVCQVGG--IEALVRTVLRAGDREDITEPAICALRHLTSR 337
Query: 1375 MFGNAKIIANPIASECIQPLISLMQS-DLSIVVESAVCAFERLLDDEQQVELVEGYDVVD 1433
+ ++ L+ ++++ V L + +
Sbjct: 338 HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 397
Query: 1434 LLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIA 1493
LV+L+ + T + R ++V+ +
Sbjct: 398 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC----------------TGALH 441
Query: 1494 ELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLK 1553
L R + N I + +L P ++ Q A L + + ++
Sbjct: 442 ILARDVHNRIVIRG----LNTIPLFVQLLYSPIENI--QRVAAGVLCELAQDKEAAEA-- 493
Query: 1554 LTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGIL 1613
+ PL L S + + +L + E QD + +V L +
Sbjct: 494 IEAEGATAPLTELLHSRNEGVATYAAAVLFRM--SEDKPQDYKKRLSVELTSSLFRTEPM 551
Query: 1614 NLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHS 1657
+TA L+ + P +
Sbjct: 552 AWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDALGMD 595
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 6e-26
Identities = 97/608 (15%), Positives = 185/608 (30%), Gaps = 99/608 (16%)
Query: 1416 LLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIID 1475
L++ + EL + L +L++ + +V + +L K R M ++
Sbjct: 2 LINYQDDAELATR--AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV- 58
Query: 1476 NCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSA 1535
+ +Q +
Sbjct: 59 -----------------------------------------SAIVRTMQNTNDVETARCT 77
Query: 1536 LQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QEHFQQD 1594
L N+ + L+ + S I L+ L SP ++ L +LL QE +
Sbjct: 78 AGTLHNLSHHREGLL--AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 1595 ITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWP---KAVADAGGIFEIAKVIIQDD 1651
+ + +V L + L+ ++ + +GG + ++
Sbjct: 136 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 195
Query: 1652 PQPPHSLWESAALVLSNVLRFNTEYYFKV----PVVVLVKMLHSTLESTITVALNALLIH 1707
+ L + + VL + + + + L L + + L L
Sbjct: 196 YE---KLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN- 250
Query: 1708 ERTDASSAEQMTQAGVIDALLDLLRSHQCE--ETSGRLLEAL-FNNGRIRQMKVSKYAIA 1764
++ +Q G++ L+ LL S + +L L NN + + M I
Sbjct: 251 --LSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 308
Query: 1765 PLSQYLLDPQTRSESGKLLAALALGDLS----QHEGLARASASVSACRALISLLEDQSTD 1820
L + +L R E A AL L+ + E A ++ LL S
Sbjct: 309 ALVRTVLRAGDR-EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367
Query: 1821 EMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHT 1880
+ + ++N +C N + E G I + +LL+ + + + ++ +
Sbjct: 368 PLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG----TQQQ 422
Query: 1881 LQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVG 1940
E V E I L + N V+R L+ IP V
Sbjct: 423 FVEGVRMEEIVEGCTGALHIL-ARDVHNRIVIRGLN-----------------TIPLFVQ 464
Query: 1941 ALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHER 2000
L S E Q LC L D ++A+ A A L L+ +
Sbjct: 465 LLYSPIENIQRVAAGVLCEL-------AQDKEAAEAIEAEGATAPLTELLHSRNEGVATY 517
Query: 2001 ADSLLHCL 2008
A ++L +
Sbjct: 518 AAAVLFRM 525
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 6e-25
Identities = 94/565 (16%), Positives = 180/565 (31%), Gaps = 74/565 (13%)
Query: 1007 ALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILF 1066
A ++ +S + + + + A+ + + A +A L L
Sbjct: 34 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC--------TAGTLHNLS 85
Query: 1067 QDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAG 1126
+L+ IPAL +L S F+A + +L +G +A+ +G +
Sbjct: 86 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL-LLHQEGAKMAVRLAGGLQK 144
Query: 1127 LITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEK----LFEI----EDVRVGSTARKSI 1178
++ L+ + L L + ++ ++ A
Sbjct: 145 MVALLNK--------------------TNVKFLAITTDCLQILAYGNQESKLIILASGGP 184
Query: 1179 PLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTE 1238
LV+I+R R+L +++ +NK + EAGG+ AL +L+ Q +
Sbjct: 185 QALVNIMRT-YTYEKLLWTTSRVL-KVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 242
Query: 1239 ATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIKD 1297
+ L + + E L L+ +L AA L L + K
Sbjct: 243 NCLWTLRNLSDAATKQEGMEGLLG---TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299
Query: 1298 SDLAGQAVPPLVDMLSAASECE--LEVALVALVKLTSGNTSKACLLTDI-DGNLLESLYK 1354
+ LV + A + E E A+ AL LTS + + L + K
Sbjct: 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK 359
Query: 1355 ILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQS-------------- 1400
+L S L + L + A I L+ L+
Sbjct: 360 LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 419
Query: 1401 --------DLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVC 1452
+ +VE A L D ++ G + + L V+L+ +
Sbjct: 420 QQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 479
Query: 1453 ALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALCSTIAELFRILTNSSAIARSSDA 1511
L +L +D+ + + G +LL A LFR+ + + +
Sbjct: 480 VLCELAQDKEAAE-AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLS 538
Query: 1512 AKIVEPLFMVLLQPDFSLWGQHSAL 1536
++ LF + + W + + L
Sbjct: 539 VELTSSLF----RTEPMAWNETADL 559
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-22
Identities = 95/662 (14%), Positives = 176/662 (26%), Gaps = 128/662 (19%)
Query: 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL-TSNTQMVA 696
+ L ++LN ++ AA ++ L + + ++V+ +R + +N A
Sbjct: 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74
Query: 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DP 755
+A L LS ++ G + L+K+ + A+ L NLL
Sbjct: 75 RCTAGTLHNLSH----HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 130
Query: 756 DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTL 815
V L + + +L + + + L L GN + + ++L
Sbjct: 131 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY---------GNQESKLIIL-- 179
Query: 816 VDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPP 875
G + LV +
Sbjct: 180 -------ASGG------------------------------------PQALVNIMRTYTY 196
Query: 876 P-LQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAA 934
L +L L + + + AL + S V+ L +
Sbjct: 197 EKLLWTTSRVLKVLSVCSSNKP---AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS- 252
Query: 935 KEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEADDFD 994
+ + G L L+ L S DI V T
Sbjct: 253 ----DAATKQEGMEGLLGTLVQLL----------GSDDINVVTC---------------- 282
Query: 995 VPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEG 1054
A +L ++ N + V + G +EAL +
Sbjct: 283 ------------AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT---EPA 327
Query: 1055 IWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGI 1114
I + + + +P + LL A + +
Sbjct: 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN-LALCPAN 386
Query: 1115 ILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEV---------VLEKLFEI 1165
+ GA+ L+ L+ DT ++ + L L
Sbjct: 387 HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD 446
Query: 1166 EDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDAL 1225
R+ +IPL V +L VA +L ++ + G L
Sbjct: 447 VHNRIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPL 503
Query: 1226 TKYL-SLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAAR 1284
T+ L S + +T A LFR+ P + S+ + L +A
Sbjct: 504 TELLHSRNEGVATYAAAV-LFRMSEDKPQDYKKRLSVELTSSL---FRTEPMAWNETADL 559
Query: 1285 AL 1286
L
Sbjct: 560 GL 561
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 5e-22
Identities = 95/661 (14%), Positives = 193/661 (29%), Gaps = 110/661 (16%)
Query: 863 IEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEV 922
I L L + + +KA ++ +L + + +M + A+ + +++ +E
Sbjct: 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA--IMRSPQMVSAIVRTMQNTNDVET 73
Query: 923 RVGGAALL--ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRG 980
A L + +E + G + L+ L S V
Sbjct: 74 ARCTAGTLHNLSHHREGLLAIFKS----GGIPALVKML----------GSPVDSVLFY-- 117
Query: 981 YMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLAS 1040
A+ L + + V AG L+ + L
Sbjct: 118 --------------------------AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 151
Query: 1041 YTSNPQAEFEDTEGIWISALFLAIL-FQDANIVLSPATMRIIPALALLLRSDEVIDRFFA 1099
+ + + I+ L IL + + L AL ++R+ +
Sbjct: 152 ---------TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 202
Query: 1100 AQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVL 1159
+ V S AI +G + L H+ + LV + L
Sbjct: 203 T-SRVLKVLSVCSSNKPAIVEAGGMQ---ALGLHLTDPSQRLV-------------QNCL 245
Query: 1160 EKLFEIEDVRVGSTARKS-IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAE 1218
L + D + + LV +L D A +L+ + + NK+++ +
Sbjct: 246 WTLRNLSDAATKQEGMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQ 303
Query: 1219 AGGLDALTKYLSLS--PQDSTEATITELFRILFSNPDLIRYEASLSSLN---QLIAVLHL 1273
GG++AL + + + +D TE I L + + + + ++ ++ +LH
Sbjct: 304 VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP 363
Query: 1274 GSRGARLSAARALHQL--FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLT 1331
S + A L + N G A+P LV +L A + +
Sbjct: 364 PSHWPLIKATVGLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGG---- 418
Query: 1332 SGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECI 1391
+ + + E+ I+ + I
Sbjct: 419 -------------------TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 459
Query: 1392 QPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATV 1451
+ L+ S + + A L D++ E +E L L+ N +
Sbjct: 460 PLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 519
Query: 1452 CALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDA 1511
L ++ +D+ + + + L P A T I + D
Sbjct: 520 AVLFRMSEDKPQDYKKRLSVELTS---SLFRTEPMAWNETADLGLDIGAQGEPLGYRQDD 576
Query: 1512 A 1512
Sbjct: 577 P 577
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 156 bits (395), Expect = 7e-40
Identities = 84/463 (18%), Positives = 162/463 (34%), Gaps = 43/463 (9%)
Query: 216 GGVDIIVGLLSSDNAAAQSNAASLLARLML-AFGDSIPTVIDSGAVKALVQLVGQNNDIS 274
+ + L+SD+ Q +A +++ I VI +G V LV+ + +N
Sbjct: 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146
Query: 275 VRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRAL 334
++ AA AL ++S + K VV AD VP+ I + S E ++ A AL
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVE---------VKEQAIWAL 197
Query: 335 ANIYGGMPALVVYLGELSQSPRLAA----PVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
N+ G Y+ + + + +I + L + + Q
Sbjct: 198 GNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQ 257
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
L L+ D + + + G Q V K L+ L++ + V+
Sbjct: 258 ALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 317
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
+ ++ + + + + L LL E ++ A I+ +T +
Sbjct: 318 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC---HSEDIRACVESAGAVPAFLWLL 567
A+ A IPPLV+LLE K ++ A + DI + S G + LL
Sbjct: 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 437
Query: 568 KSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED 627
+ + + + AL +++ ++ + L + A I+ G
Sbjct: 438 EIADNRIIEVTLDALENILKMGEADKEARGLNINEN------ADFIEKAG---------- 481
Query: 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670
G+ + + N++ E A ++ F +D
Sbjct: 482 ----------GMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 514
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 8e-32
Identities = 57/411 (13%), Positives = 142/411 (34%), Gaps = 20/411 (4%)
Query: 395 LVMLLKPHDNKLVQERVLEA--MASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYL 452
+ L D + ++ + S + + +++ + ++
Sbjct: 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 151
Query: 453 ILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512
+LT + + + + + L I LL S + +E A+ + + D + +
Sbjct: 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 211
Query: 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP 572
+ P++ L + A L LC + + A+P L+ S
Sbjct: 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDT 271
Query: 573 KGQDASAMALTKLI--------RAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL 624
+ + A++ L D +L+ LL +S + ++ +G+++T
Sbjct: 272 ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT--- 328
Query: 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPC 684
DL + L +L +L+S E ++ A ++++ + + ++ ++ P
Sbjct: 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388
Query: 685 MRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETA 744
++LL ++ A+ S + +++G +KPL L + + E
Sbjct: 389 VKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT 448
Query: 745 VAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795
+ AL N+L + E ++ + G + ++
Sbjct: 449 LDALENILKMGEADKEARGLNINENADFIEKAG-------GMEKIFNCQQN 492
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-25
Identities = 83/482 (17%), Positives = 163/482 (33%), Gaps = 59/482 (12%)
Query: 94 RSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVS 153
R+ P + D + L +P + L S+ + +A ++
Sbjct: 56 RNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQIL 115
Query: 154 SGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL 213
S + + GVVP L + + + Q ++Q AL N+ + +
Sbjct: 116 SREHRPPI---DVVIQAGVVPRLVEFM--RENQPEMLQLEAAWALTNIASGTSAQTKVVV 170
Query: 214 EAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDI 273
+A V + + LL + + + A L + D V+ A++ ++ L +N
Sbjct: 171 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKP 229
Query: 274 SVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRA 333
S+ +A L L V + +P L I + E A A
Sbjct: 230 SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE---------TLVDACWA 280
Query: 334 LANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIED 393
++ + G + + ++ R
Sbjct: 281 ISYLSDGPQEAIQAVIDVRIPKR------------------------------------- 303
Query: 394 ILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYL 452
LV LL H++ LVQ L A+ ++ GN +Q V +A L L++ ++++
Sbjct: 304 -LVELLS-HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA 361
Query: 453 ILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE---QVDDSK 509
+++ + +A+ I L+ LL ++ + ++ A I+ + Q D
Sbjct: 362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII 421
Query: 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS 569
+ + G I PL LLE + EV L + E + ++ K+
Sbjct: 422 RYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA-RGLNINENADFIEKA 480
Query: 570 GG 571
GG
Sbjct: 481 GG 482
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 4e-24
Identities = 67/407 (16%), Positives = 150/407 (36%), Gaps = 31/407 (7%)
Query: 24 ESNGTSAMDDPESTMSTVAKFLEQLHANMSS--PQERELITMRILTIAKAKKEARLLIGS 81
+ S++ + S + + L Q+ ++S QE+ T++ I + + +
Sbjct: 68 DEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVI 127
Query: 82 HAQAMPLFISILRSGT-PLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKSEST 139
A +P + +R + ++ A L+ + V+ +P + LL + S
Sbjct: 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV 187
Query: 140 DTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-GVVPTLWDQLNPKNKQDNVVQGFVTGAL 198
+ ++ A AL G ++ D + +V + + + N + T L
Sbjct: 188 EVKEQAIWAL-----GNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPS---LIRTATWTL 239
Query: 199 RNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSG 258
NLC K ++ + + + L+ S + +A ++ L ++I VID
Sbjct: 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 299
Query: 259 AVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECM 318
K LV+L+ + V+ A A+ + + + + V+ A +P L + +P +
Sbjct: 300 IPKRLVELL-SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN-- 356
Query: 319 QGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPR----LAAPVADIIGALAYALMV 374
++ A ++NI G + + + + P L +A+
Sbjct: 357 -------IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409
Query: 375 FEQKSGVDDEPFDA---RQIEDILVMLLKPHDNKLVQERVLEAMASL 418
+ + L LL+ DN+ + E L+A+ ++
Sbjct: 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR-IIEVTLDALENI 455
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 95.1 bits (236), Expect = 7e-20
Identities = 63/389 (16%), Positives = 135/389 (34%), Gaps = 28/389 (7%)
Query: 1081 IPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPN 1140
+P + L SD++ ++ A ++ + I + +G V L+ + + +
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 148
Query: 1141 LVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTA-RKSIPLLVDILRPIPDRPGAPPV-- 1197
L A L + + ++PL + +L G+ V
Sbjct: 149 LEAAW------------ALTNIASGTSAQTKVVVDADAVPLFIQLL-----YTGSVEVKE 191
Query: 1198 -AVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIR 1256
A+ L + S + + + ++ + + + L +
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251
Query: 1257 YEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAEN-IKDSDLAGQAVPPLVDMLSAA 1315
+ +L L +++ + A A+ L D + + + LV++LS
Sbjct: 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311
Query: 1316 SECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIM 1375
S AL A+ + +GN + ++ I+ +L +L +LSS K + I
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVV--INAGVLPALRLLLSSPKENIKKEACWTISNIT 369
Query: 1376 FGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL----DDEQQVELVEGYDV 1431
GN + I I + I PL+ L++ + A A + +
Sbjct: 370 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429
Query: 1432 VDLLVRLVSGTNHRLVEATVCALIKLGKD 1460
+ L L+ ++R++E T+ AL + K
Sbjct: 430 IKPLCDLLEIADNRIIEVTLDALENILKM 458
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 90.5 bits (224), Expect = 2e-18
Identities = 69/484 (14%), Positives = 159/484 (32%), Gaps = 75/484 (15%)
Query: 1293 ENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESL 1352
+ + Q +P + L++ E A V ++ S + + I ++ L
Sbjct: 77 ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILS-REHRPPIDVVIQAGVVPRL 135
Query: 1353 YKILSSNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVC 1411
+ + N L+ AA L I G + + ++ + I L+ +
Sbjct: 136 VEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG---------- 185
Query: 1412 AFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKA 1471
+ + E + AL + D T + +++
Sbjct: 186 -------------------------------SVEVKEQAIWALGNVAGDSTDYRDYVLQC 214
Query: 1472 GIIDNCLDLL-PVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW 1530
++ L L PS + + L + S ++ + L ++ D
Sbjct: 215 NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTET- 273
Query: 1531 GQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QE 1589
A A+ + + PQ + + ++ + L+ L S +Q + +++ +
Sbjct: 274 -LVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331
Query: 1590 HFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKI---STSWPKAVADAGGIFEIAKV 1646
Q + + L L N+++ A + I +T +AV DA I + K+
Sbjct: 332 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKL 391
Query: 1647 IIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVV-------LVKMLHSTLESTITV 1699
+ + + + A +SN + + +V L +L I V
Sbjct: 392 LEVAEYK----TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 447
Query: 1700 ALNAL-----------LIHERTDASSAEQMTQAGVIDALLDLLRSHQCE--ETSGRLLEA 1746
L+AL +A+ + +AG ++ + + ++ + E + +++E
Sbjct: 448 TLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507
Query: 1747 LFNN 1750
F
Sbjct: 508 YFGE 511
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 90.5 bits (224), Expect = 2e-18
Identities = 72/418 (17%), Positives = 146/418 (34%), Gaps = 31/418 (7%)
Query: 1485 PSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILE 1544
S + +IL+ V P + ++ + Q A AL NI
Sbjct: 101 MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIAS 160
Query: 1545 KPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVP 1603
+ T + + + + L + S +++ L ++ ++ + NA+ P
Sbjct: 161 GTSAQ-TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEP 219
Query: 1604 LVQLAGIGILNLQQTAVKALEKI---STSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWE 1660
++ L +L +TA L + P + + +AK+I D +
Sbjct: 220 ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE----TLV 275
Query: 1661 SAALVLSNVLRFNTEYYFKV----PVVVLVKMLHSTLESTITVALNALLIHERTDASSAE 1716
A +S + E V LV++L T AL A+ + +
Sbjct: 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335
Query: 1717 QMTQAGVIDALLDLLRSHQCE--ETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLL--- 1771
+ AGV+ AL LL S + + + + + + V + P LL
Sbjct: 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395
Query: 1772 DPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQ 1831
+ +T+ E+ ++ + G L + + + R S + L LLE + V + AL+
Sbjct: 396 EYKTKKEACWAISNASSGGLQRPD-IIRYLVSQGCIKPLCDLLEIADN-RIIEVTLDALE 453
Query: 1832 NFV-----------MCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSN 1878
N + + N + +AGG+ + + N ++ +A + + F
Sbjct: 454 NILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 2e-14
Identities = 64/400 (16%), Positives = 143/400 (35%), Gaps = 50/400 (12%)
Query: 1080 IIPALALLLRSDEVID-RFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDT 1138
++P L +R ++ + AA A+ ++ SG+ + ++ AV I L+
Sbjct: 131 VVPRLVEFMRENQPEMLQLEAAWALTNI-ASGTSAQTKVVVDADAVPLFIQLLYT----- 184
Query: 1139 PNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKS-------IPLLVDILRPIPDR 1191
EV + ++ + +V ST + + ++ + ++
Sbjct: 185 --------------GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFN--SNK 228
Query: 1192 PGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSN 1251
P A L+ + G + L L K + ++ + +
Sbjct: 229 PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288
Query: 1252 PDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF-DAENIKDSDLAGQAVPPLVD 1310
+ I+ + +L+ +L S + A RA+ + + + +P L
Sbjct: 289 QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL 348
Query: 1311 MLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAE 1370
+LS+ E + A + +T+GNT + + ID NL+ L K+L + + K+ A
Sbjct: 349 LLSSPKENIKKEACWTISNITAGNTEQIQAV--IDANLIPPLVKLLEV-AEYKTKKEACW 405
Query: 1371 ----LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL--------- 1417
II ++ CI+PL L++ + ++E + A E +L
Sbjct: 406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEA 465
Query: 1418 ---DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCAL 1454
+ + + +E ++ + N ++ E +
Sbjct: 466 RGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 505
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 1e-12
Identities = 53/331 (16%), Positives = 111/331 (33%), Gaps = 26/331 (7%)
Query: 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM-RQDICGSLATDEIVNPCMRLLTSN 691
S + L + Q LNS + + Q A + S + + +V + + N
Sbjct: 83 SQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN 142
Query: 692 T-QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
+M+ ++A AL ++ T + + V I+L T S++ E A+ AL N
Sbjct: 143 QPEMLQLEAAWALTNIASGT---SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 199
Query: 751 LLSD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCR 809
+ D D VL + + + + + A+ L L + K
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG-------KKPQPDW 252
Query: 810 FVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCC 869
VV + +L + + D ++ ++ L+ + LV
Sbjct: 253 SVVSQALPTLAKL-IYSMDTETLVDACWAISY----LSDGPQEAIQAVIDVRIPKRLVEL 307
Query: 870 LAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALAD--RIMHSSSLEVRVGGA 927
L+ +Q A+ + + + A G L ++ S ++
Sbjct: 308 LSHESTLVQTPALRAVGNIVTGNDLQTQVVINA-----GVLPALRLLLSSPKENIKKEAC 362
Query: 928 ALLICAAKEHKKQSMDALDLSGYLKPLIYAL 958
+ + +Q + A+ + + PL+ L
Sbjct: 363 WTISNITAGNTEQ-IQAVIDANLIPPLVKLL 392
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 61.6 bits (149), Expect = 2e-09
Identities = 71/339 (20%), Positives = 120/339 (35%), Gaps = 49/339 (14%)
Query: 1007 ALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILF 1066
A W L I+S V++A A+ L + + + + IW AL
Sbjct: 151 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK-----EQAIW--AL------ 197
Query: 1067 QDANIVLSPATMR-------IIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIA 1119
N+ R + + L S++ A +++L C G K
Sbjct: 198 --GNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL-CRGKKPQPDWSV 254
Query: 1120 NSGAVAGLITLIGHIESDTPNLV----ALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTAR 1175
S A+ L LI DT LV A+S +L P E + +
Sbjct: 255 VSQALPTLAKLIYS--MDTETLVDACWAIS---YLSDGPQEAIQAVI-----------DV 298
Query: 1176 KSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQD 1235
+ LV++L P A+R + IV G+D ++ AG L AL LS ++
Sbjct: 299 RIPKRLVELLSHESTLVQTP--ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN 356
Query: 1236 STEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL----FD 1291
+ + I N + I+ + + L+ +L + + A A+
Sbjct: 357 IKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ 416
Query: 1292 AENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKL 1330
+I ++ + PL D+L A +EV L AL +
Sbjct: 417 RPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 455
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 3e-08
Identities = 31/232 (13%), Positives = 67/232 (28%), Gaps = 13/232 (5%)
Query: 1774 QTRSESGKLLAALALGDLSQHEGLARASASVS--ACRALISLLEDQSTDEMKMVAICALQ 1831
+ +L A + + E + L+ + + + +++ A AL
Sbjct: 97 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALT 156
Query: 1832 NFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAA-LLTKFLFSNHTLQEYVSNE-L 1889
N + + V +A + + +LL + + EV QA L + ++YV
Sbjct: 157 NIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 216
Query: 1890 IRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAA 1949
+ + + ++ TL + + +P L + S
Sbjct: 217 MEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTET 273
Query: 1950 QGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERA 2001
+ L + QA+I L L+ A
Sbjct: 274 LVDACWAISYLSDG------PQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 319
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 7e-08
Identities = 80/490 (16%), Positives = 148/490 (30%), Gaps = 89/490 (18%)
Query: 695 VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS- 753
+ A + + + ++ + + + + +A +LS
Sbjct: 58 FIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSR 117
Query: 754 -DPDIAAEVLLEDVVSALTRVLAEGTSEG-KKNASRALHQLLKHFP--VGDVLKGNAQCR 809
V+ VV L + E E + A+ AL + V+ +A
Sbjct: 118 EHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADA--- 174
Query: 810 FVVLTLVDSLNAMDMNGTDVA-DALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVC 868
V + L + +V A+ + +A G + Y + +EP++
Sbjct: 175 --VPLFIQLLYTGSV---EVKEQAIWALGNVA----GDSTDYRDYVLQCNA---MEPILG 222
Query: 869 CLAEGPPPLQDKAIEILSRLC-GDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGA 927
P L A LS LC G +P + S ++++S E V
Sbjct: 223 LFNSNKPSLIRTATWTLSNLCRGKKPQPD----WSVVSQALPTLAKLIYSMDTETLVDAC 278
Query: 928 ALL--ICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERT 985
+ + + Q++ K L+ L S V+TP
Sbjct: 279 WAISYLSDGPQEAIQAVID---VRIPKRLVELL----------SHESTLVQTP------- 318
Query: 986 AFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNP 1045
AL + I + V+ AG L AL L+S N
Sbjct: 319 ---------------------ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI 357
Query: 1046 QAEFEDTEGIW-ISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMA 1104
+ E W IS + Q ++ + +IP L LL E + A A++
Sbjct: 358 KK-----EACWTISNITAGNTEQIQAVIDA----NLIPPLVKLLEVAEYKTKKEACWAIS 408
Query: 1105 SLVCSGSK--GIILAIANSGAVAGLITLIGHIESDT--------PNLVALSEEFFLVRYP 1154
+ G + II + + G + L L+ ++ N++ + E R
Sbjct: 409 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL 468
Query: 1155 DEVVLEKLFE 1164
+ E
Sbjct: 469 NINENADFIE 478
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 1e-07
Identities = 59/387 (15%), Positives = 116/387 (29%), Gaps = 24/387 (6%)
Query: 1633 AVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVL-RFNTEYYFKVPVVVLVKMLHS 1691
+ ++ + + DD SA + +L R + V +V L
Sbjct: 82 YSQLQQELPQMTQQLNSDDM----QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVE 137
Query: 1692 TLESTITV-----ALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEA 1746
+ A AL ++ + + A + + LL + E + + A
Sbjct: 138 FMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWA 196
Query: 1747 LFN----NGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASA 1802
L N + R + A+ P+ + S A L +L + + +
Sbjct: 197 LGNVAGDSTDYRDYVLQCNAMEPILGLF---NSNKPSLIRTATWTLSNLCRGKKPQPDWS 253
Query: 1803 SVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNA 1862
VS ++ L E + A A+ + +AV + + ELL +
Sbjct: 254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313
Query: 1863 EVAGQAA-LLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMN 1921
V A + + N + V N + L I +E T+ I
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS--PKENIKKEACWTISNITAG 371
Query: 1922 FPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAE 1981
+ + IP LV L+ + + + N+ S + +++
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTK---KEACWAISNASSGGLQRPDIIRYLVSQG 428
Query: 1982 AIPILQMLMKTCPPSFHERADSLLHCL 2008
I L L++ E L +
Sbjct: 429 CIKPLCDLLEIADNRIIEVTLDALENI 455
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 2e-35
Identities = 82/474 (17%), Positives = 157/474 (33%), Gaps = 65/474 (13%)
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGD-SIPTVIDSGAVKALVQLVGQ 269
V+ IV ++S+N +Q A +L+ I +I +G + V +G+
Sbjct: 52 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK 111
Query: 270 NNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGH 329
+ ++ +A AL ++S + + KAVV +P I + +P +
Sbjct: 112 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE---------Q 162
Query: 330 ATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDAR 389
A AL NI G A + + GA+
Sbjct: 163 AVWALGNIAGDGSAFRDLVIKH--------------GAI--------------------- 187
Query: 390 QIEDILVMLLKPHDNKLVQERVLEAMASLYGNIF-----LSQWVSHAEAKKVLIGLITMA 444
D L+ LL D + L + N+ + + L+ L+
Sbjct: 188 ---DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 445 TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504
+V +++ L E + K+ + L+ LLG + A++ I +
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 505 VDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564
D+ + AG + LL ++ A + + +D V + G VP +
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 364
Query: 565 WLLKSGGPKGQDASAMALTKLIRAADSATINQ---------LLALLLGDSPSSKAHVIKV 615
+L K Q +A A+T I L+ LL ++
Sbjct: 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDA 424
Query: 616 LGHVLTMALQEDLVQKGSAA---NKGLRSLVQVLNSSNEENQEYAASVLADLFS 666
+ ++ A + +K S GL + + NE + + +++ FS
Sbjct: 425 ISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-27
Identities = 66/443 (14%), Positives = 142/443 (32%), Gaps = 35/443 (7%)
Query: 382 DDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL--YGNIFLSQWVSHAEAKKVLIG 439
++ +EDI+ + +N Q + +A L + A +
Sbjct: 50 SNQGTVNWSVEDIVKGIN--SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 107
Query: 440 LITMA-TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLI 498
+ + ++ +LT + +A+ I ISLL E AV +
Sbjct: 108 FLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWAL 167
Query: 499 AILTEQVDDSKWAITAAGGIPPLVQLLEAGSQ-----KAREVAAHVLWILCCHSEDIRAC 553
+ + + G I PL+ LL L LC +
Sbjct: 168 GNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 227
Query: 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSAT--------INQLLALLLGDS 605
+P + LL P+ S A++ L + + QL+ LL
Sbjct: 228 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 287
Query: 606 PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLF 665
++ +G+++T D + L +L + Q+ A ++++
Sbjct: 288 LPIVTPALRAIGNIVT---GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344
Query: 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAE-G 724
+ RQD + +V + +L+ ++A A+ T T ++ Y+ G
Sbjct: 345 AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNY---TSGGTVEQIVYLVHCG 401
Query: 725 DVKPLIKLAKTSSIDAAETAVAALANLL-------SDPDIAAEVLLEDVVSALTRVLAEG 777
++PL+ L + + A++N+ ++ + + + +
Sbjct: 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE 461
Query: 778 TSEGKKNASRALHQLLKHFPVGD 800
K + + K+F V +
Sbjct: 462 NESVYKASLNLIE---KYFSVEE 481
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 4e-26
Identities = 69/495 (13%), Positives = 153/495 (30%), Gaps = 65/495 (13%)
Query: 103 NVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162
++ + + + + ++ + S + +++ A +A ++ S +
Sbjct: 35 DLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLS---REKQP 91
Query: 163 GMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIV 222
+ + G++P L + +Q AL N+ +A ++ G + +
Sbjct: 92 PIDNIIRAGLIPKFVSFL--GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFI 149
Query: 223 GLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN----DISVRAS 278
LL+S +A A L + VI GA+ L+ L+ + +
Sbjct: 150 SLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRN 209
Query: 279 AADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY 338
L L A +P L+ + E + + A++ +
Sbjct: 210 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE---------VLADSCWAISYLT 260
Query: 339 GGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVML 398
G + + + G + LV L
Sbjct: 261 DGPNERIEMVVKK--------------GVVP------------------------QLVKL 282
Query: 399 LKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLT 457
L + L A+ ++ G +Q V A A V L+T ++++ +++
Sbjct: 283 LG-ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341
Query: 458 KLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA-ILTEQVDDSKWAITAAG 516
+ + + + L+ +L + + Q+ A I + + + G
Sbjct: 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCG 401
Query: 517 GIPPLVQLLEAGSQKAREVAAHVLWILCC------HSEDIRACVESAGAVPAFLWLLKSG 570
I PL+ LL A K +V + + +E + +E G + L +
Sbjct: 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHE 461
Query: 571 GPKGQDASAMALTKL 585
AS + K
Sbjct: 462 NESVYKASLNLIEKY 476
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 110 bits (275), Expect = 8e-25
Identities = 79/394 (20%), Positives = 136/394 (34%), Gaps = 31/394 (7%)
Query: 41 VAKFLEQLHANMSSPQERELITMRILT-IAKAKKEARLLIGSHAQAMPLFISILRSGTPL 99
+ KF+ L + + + LT IA E + A+P FIS+L S
Sbjct: 102 IPKFVSFL--GKTDCSPIQFESAWALTNIASGTSEQTKAV-VDGGAIPAFISLLASPHAH 158
Query: 100 AKVNVAATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLS 158
L + D R V+ G I PLL+LL T + L
Sbjct: 159 ISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218
Query: 159 DDHVGMKIFVT-EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGG 217
+ E ++PTL L+ D V A+ L + ++ G
Sbjct: 219 RNKNPAPPLDAVEQILPTLVRLLH---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGV 275
Query: 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277
V +V LL + + A + ++ + VID+GA+ L+ N +++
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQK 334
Query: 278 SAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANI 337
A + +++ + VV VP L+G + + Q A A+ N
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK---------TQKEAAWAITNY 385
Query: 338 -YGGMPALVVYLGELSQSPRLAA----PVADIIGALAYALM-VFEQKSGVDDEPFDARQI 391
GG +VYL L II + A+ +F+ + + + I
Sbjct: 386 TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMI 445
Query: 392 E-----DILVMLLKPHDNKLVQERVLEAMASLYG 420
E D + L + H+N+ V + L + +
Sbjct: 446 EECGGLDKIEALQR-HENESVYKASLNLIEKYFS 478
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 1e-19
Identities = 69/424 (16%), Positives = 146/424 (34%), Gaps = 34/424 (8%)
Query: 1349 LESLYKILSSNSSLELKRNAAELCFIMF--GNAKIIANPIASECIQPLISLMQ-SDLSIV 1405
+E + K ++SN+ E + A + + I N I + I +S + +D S +
Sbjct: 59 VEDIVKGINSNNL-ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 117
Query: 1406 VESAVCAFERLL-DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPR 1464
+ A + +Q + V + + L++ + + E V AL + D +
Sbjct: 118 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177
Query: 1465 KLQMVKAGIIDNCLDLL------PVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPL 1518
+ ++K G ID L LL +A L + L + N + +I+ L
Sbjct: 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 237
Query: 1519 FMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLG 1578
+L D + + A+ + + P + + + V+ L+ L + I
Sbjct: 238 VRLLHHNDPEV--LADSCWAISYLTDGPNERIEM-VVKKGVVPQLVKLLGATELPIVTPA 294
Query: 1579 TELLTHLLA-QEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKI---STSWPKAV 1634
+ +++ + Q + A+ L N+Q+ A + I + V
Sbjct: 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354
Query: 1635 ADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPV-----VVLVKML 1689
+ G + ++ + + AA ++N T V L+ +L
Sbjct: 355 VNHGLV----PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL 410
Query: 1690 HSTLESTITVALNALL------IHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRL 1743
+ I V L+A+ + + + G +D + L H+ E
Sbjct: 411 SAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-RHENESVYKAS 469
Query: 1744 LEAL 1747
L +
Sbjct: 470 LNLI 473
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 92.8 bits (230), Expect = 3e-19
Identities = 69/432 (15%), Positives = 147/432 (34%), Gaps = 49/432 (11%)
Query: 1074 SPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGH 1133
+ + + S+ + + A QA L+ + I I +G + ++ +G
Sbjct: 52 QGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGK 111
Query: 1134 IESDTPNLV-----ALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPI 1188
+D + AL+ + V++ +IP + +L
Sbjct: 112 --TDCSPIQFESAWALTNIASGTSEQTKAVVD--------------GGAIPAFISLLASP 155
Query: 1189 PDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEAT-------- 1240
AV L I + ++ + G +D L L++ +
Sbjct: 156 HAHISE--QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213
Query: 1241 ITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIKDSD 1299
++ L R P L E L +L +L LH + A+ L +
Sbjct: 214 LSNLCRNKNPAPPLDAVEQILPTLVRL---LHHNDPEVLADSCWAISYLTDGPNERIEMV 270
Query: 1300 LAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSN 1359
+ VP LV +L A + AL A+ + +G + + ID L +L++
Sbjct: 271 VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV--IDAGALAVFPSLLTNP 328
Query: 1360 SSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL- 1417
+ +++ A + I G I + + L+ ++ + A A
Sbjct: 329 KT-NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387
Query: 1418 --DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGK------DRTPRKLQMV 1469
EQ V LV +++ L+ L+S + ++++ + A+ + + + + +
Sbjct: 388 GGTVEQIVYLVH-CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 446
Query: 1470 KAGIIDNCLDLL 1481
+ G +D L
Sbjct: 447 ECGGLDKIEALQ 458
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 87.0 bits (215), Expect = 2e-17
Identities = 60/349 (17%), Positives = 128/349 (36%), Gaps = 14/349 (4%)
Query: 1178 IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDST 1237
IP V L D + LT I G+ + + G + A L+ +
Sbjct: 102 IPKFVSFLGK-TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160
Query: 1238 EATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSR-----GARLSAARALHQLF-D 1291
E + L I +++ L+A+L + G + L L +
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220
Query: 1292 AENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLES 1351
D Q +P LV +L L + A+ LT G + ++ + ++
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV--VKKGVVPQ 278
Query: 1352 LYKILSSNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410
L K+L + + L + A + I+ G + I + + SL+ + + + + A
Sbjct: 279 LVKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337
Query: 1411 CAFERLL-DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQ-M 1468
+ + Q++ V + +V LV ++S + + + A+ T ++ +
Sbjct: 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 397
Query: 1469 VKAGIIDNCLDLLPVAPSALCSTIAE-LFRILTNSSAIARSSDAAKIVE 1516
V GII+ ++LL + + I + + I + + + + ++E
Sbjct: 398 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIE 446
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 4e-15
Identities = 78/480 (16%), Positives = 154/480 (32%), Gaps = 81/480 (16%)
Query: 1417 LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDN 1476
+ D + + V D++ + S ++AT A L +++ P +++AG+I
Sbjct: 45 MADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLI-- 102
Query: 1477 CLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSAL 1536
P F+ L Q +
Sbjct: 103 ----------------------------------------PKFVSFLGKTDCSPIQFESA 122
Query: 1537 QALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QEHFQQDI 1595
AL NI T + I +S L SP I + L ++ F+ +
Sbjct: 123 WALTNIASGTSEQ-TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 1596 TTKNAVVPLVQLAGIGILNLQQTAVKA--------LEKISTSWPKAVADAGGIFEIAKVI 1647
A+ PL+ L + L+ L + P A + + +++
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 1648 IQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVV-------LVKMLHSTLESTITVA 1700
+DP+ + + +S + E ++ +VV LVK+L +T +T A
Sbjct: 242 HHNDPE----VLADSCWAISYLTDGPNE---RIEMVVKKGVVPQLVKLLGATELPIVTPA 294
Query: 1701 LNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQ---CEETSGRLLEALFNNGRIRQMK 1757
L A+ +++ AG + LL + + +E + + Q
Sbjct: 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354
Query: 1758 VSKYAIAPLSQYLL--DPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLE 1815
V+ + L L D +T+ E+ + G + L++LL
Sbjct: 355 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ---IVYLVHCGIIEPLMNLLS 411
Query: 1816 DQSTDEMKMVAICALQNFVMC------SRTNRRAVAEAGGILVVQELLLSTNAEVAGQAA 1869
+ T ++ V + A+ N + + E GG+ ++ L N V +
Sbjct: 412 AKDT-KIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASL 470
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 1e-14
Identities = 62/403 (15%), Positives = 134/403 (33%), Gaps = 26/403 (6%)
Query: 1365 KRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL--DDEQQ 1422
+ + ++ ++ + S+ A A +LL + +
Sbjct: 33 SPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPP 92
Query: 1423 VELVEGYDVVDLLVR-LVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLL 1481
++ + ++ V L + + AL + + + +V G I + LL
Sbjct: 93 IDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL 152
Query: 1482 P-VAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFS---LWGQHSALQ 1537
+ L I + SA ++PL +L PD S +
Sbjct: 153 ASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212
Query: 1538 ALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITT 1597
L N+ L Q++ L+ L + +++L + + ++
Sbjct: 213 TLSNLCRNKNPAPPLDAV-EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVV 271
Query: 1598 KNAVVP-LVQLAGIGILNLQQTAVKALEKISTSWP---KAVADAGGIFEIAKVIIQDDPQ 1653
K VVP LV+L G L + A++A+ I T + V DAG + ++
Sbjct: 272 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT- 330
Query: 1654 PPHSLWESAALVLSNVLRFNTEYYFKV-------PVVVLVKMLHSTLESTITVALNALLI 1706
++ + A +SN+ + +V +V ++ + A+
Sbjct: 331 ---NIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387
Query: 1707 HERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFN 1749
+ G+I+ L++LL + + +L+A+ N
Sbjct: 388 G--GTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISN 427
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 4e-09
Identities = 63/336 (18%), Positives = 116/336 (34%), Gaps = 40/336 (11%)
Query: 1007 ALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILF 1066
+ W L I+S V++ GA+ A LAS + L +
Sbjct: 121 SAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS---------PHAHISEQAVWALGNIA 171
Query: 1067 QD----ANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSG 1122
D ++V+ I L LL ++ + S
Sbjct: 172 GDGSAFRDLVIK---HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228
Query: 1123 AVAGLI-TLIGHIESDTPNLV-----ALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARK 1176
AV ++ TL+ + + P ++ A+S L P+E ++ + V
Sbjct: 229 AVEQILPTLVRLLHHNDPEVLADSCWAISY---LTDGPNE----RIEMVVKKGV------ 275
Query: 1177 SIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDS 1236
+P LV +L + P P A+R + IV G+D + +AG L L+ +
Sbjct: 276 -VPQLVKLLGA-TELPIVTP-ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332
Query: 1237 TEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIK 1296
+ + I D I+ + + L+ VL + AA A+ ++
Sbjct: 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE 392
Query: 1297 DSDLAGQ--AVPPLVDMLSAASECELEVALVALVKL 1330
+ PL+++LSA ++V L A+ +
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 428
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 60.4 bits (146), Expect = 4e-09
Identities = 60/373 (16%), Positives = 121/373 (32%), Gaps = 54/373 (14%)
Query: 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM-RQDICGSLATDEIVNPC 684
D+ N + +V+ +NS+N E+Q A L S +Q ++ ++
Sbjct: 46 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 105
Query: 685 MRLLT-SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743
+ L ++ + +SA AL ++ T +T + A + I L + +E
Sbjct: 106 VSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA---IPAFISLLASPHAHISEQ 162
Query: 744 AVAALANLLSD-PDIAAEVLLEDVVSALTRVLAEGTSEGKK-----NASRALHQLLKHFP 797
AV AL N+ D V+ + L +LA N + L L ++
Sbjct: 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 222
Query: 798 VGDVLKGNAQCRFVVLTLVDSLNAMDMNG-TDVADAL---------------------EV 835
L Q + TLV L+ D D A+ ++
Sbjct: 223 PAPPLDAVEQI---LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279
Query: 836 VALLARTKQGLNFTYPPWAALAEVPSS-------------IEPLVCCLAEGPPPLQDKAI 882
V LL T+ + P A+ + + + L +Q +A
Sbjct: 280 VKLLGATELPIV--TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337
Query: 883 EILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSM 942
+S + + + + + ++ + + + A + + +
Sbjct: 338 WTMSNITAGRQDQI---QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI 394
Query: 943 DALDLSGYLKPLI 955
L G ++PL+
Sbjct: 395 VYLVHCGIIEPLM 407
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 3e-07
Identities = 65/445 (14%), Positives = 124/445 (27%), Gaps = 61/445 (13%)
Query: 1587 AQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWP----KAVADAGGIFE 1642
+ T +V +V+ L Q A +A K+ + + AG I +
Sbjct: 45 MADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPK 104
Query: 1643 IAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKV----PVVVLVKMLHSTLESTIT 1698
+ + D P + +A L+N+ +E V + + +L S
Sbjct: 105 FVSFLGKTDCSP---IQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161
Query: 1699 VALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKV 1758
A+ AL ++ + + + G ID LL LL
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP------------------------ 197
Query: 1759 SKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQS 1818
D T + L +L +++ A +V + L +
Sbjct: 198 -------------DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN 244
Query: 1819 TDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLF-- 1876
E+ + A+ V + G + + +LL +T + A +
Sbjct: 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304
Query: 1877 SNHTLQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIP 1936
++ Q+ + + + L I +E T+ I +P
Sbjct: 305 TDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVP 361
Query: 1937 HLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPS 1996
LVG L Q + T V + ++ I L L+
Sbjct: 362 FLVGVLSKADFKTQKEAAWAITNY-----TSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416
Query: 1997 FHERADSLLHCLPGCLTVTIKRGNN 2021
+ L + K G
Sbjct: 417 IIQVI---LDAISNIFQAAEKLGET 438
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 9e-07
Identities = 66/447 (14%), Positives = 138/447 (30%), Gaps = 74/447 (16%)
Query: 701 RALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIA 758
LG V+ ++K ++++++ A A LLS
Sbjct: 34 PDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPI 93
Query: 759 AEVLLEDVVSALTRVLAEGTSEG-KKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVD 817
++ ++ L + + ++ AL + + + +
Sbjct: 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA---IPAFIS 150
Query: 818 SLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPL 877
L + + A+ + +A + L +I+PL+ LA
Sbjct: 151 LLASPHAH--ISEQAVWALGNIAGDG-------SAFRDLVIKHGAIDPLLALLAVPDLST 201
Query: 878 QDKAIE-----ILSRLC-GDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLI 931
LS LC PA D + + L R++H + EV + I
Sbjct: 202 LACGYLRNLTWTLSNLCRNKNPAPPLDAV---EQILPTLV-RLLHHNDPEVLA-DSCWAI 256
Query: 932 CAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEAD 991
+ + ++ + G + L+ L + ++ + TP
Sbjct: 257 SYLTDGPNERIEMVVKKGVVPQLVKLL----------GATELPIVTP------------- 293
Query: 992 DFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFED 1051
AL + I + V++AGAL L + +N Q
Sbjct: 294 ---------------ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK---- 334
Query: 1052 TEGIW-ISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
E W +S + Q +V ++P L +L + + AA A+ + G
Sbjct: 335 -EATWTMSNITAGRQDQIQQVV----NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGG 389
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESD 1137
+ I+ + + G + L+ L+ ++
Sbjct: 390 TVEQIVYLVHCGIIEPLMNLLSAKDTK 416
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 5e-34
Identities = 114/776 (14%), Positives = 236/776 (30%), Gaps = 100/776 (12%)
Query: 101 KVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAA-------------- 146
+ A L VL K++ + CI + SL K E
Sbjct: 25 RRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVER 84
Query: 147 --------------------------------EALYEVSSGGLSDDHVGMKIFVTE---- 170
+ + SG + +
Sbjct: 85 TKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNR 144
Query: 171 ---GVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSS 227
++ L + + G + RN+ + +E G+ ++ + S
Sbjct: 145 EIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSE 204
Query: 228 DNAAA-----------QSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVR 276
+ A+ LAR+ + + ++ D+ +
Sbjct: 205 LEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESK 264
Query: 277 ASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQ---GHATRA 333
A+ AL + + VVA +G+ +I A+ E Q + L +A
Sbjct: 265 VRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKA 324
Query: 334 LANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIED 393
A G+ L + R+ A V + + + E
Sbjct: 325 KALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQ---DAAIRPFGDGAALKLAEA 381
Query: 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQW-VSHAEAKKVLIGLITMATADVREYL 452
L+KP +K ++ + +A L + + + + L+ L +
Sbjct: 382 CRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGV 441
Query: 453 ILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512
+ + LC + E I+L E+H+ V + ++ +
Sbjct: 442 VTTFVNLCN---AYEKQEMLPEMIELAKFAKQHIPEEHELDDV-------DFINKRITVL 491
Query: 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP 572
G L L + S ++E+ A VL + C +++R V G V A L + G
Sbjct: 492 ANEGITTALCALAKTESHNSQELIARVLNAV-CGLKELRGKVVQEGGVKALLRMALEGTE 550
Query: 573 KGQDASAMALTKLIRAADSAT----------INQLLALLLGDSPSSKAHVIKVLGHVLTM 622
KG+ + AL ++ + I LL LL + + L + +
Sbjct: 551 KGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLL--QQDCTALENFESLMALTNL 608
Query: 623 ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVN 682
A + V++ +G+ + L + AA L +L I ++ V
Sbjct: 609 ASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVK 668
Query: 683 PCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAE 742
L + AT A AL ++ + ++ + L L S
Sbjct: 669 FLALLCEDEDEETATACAGALAIITSVSVKCCEKILA--IASWLDILHTLIANPSPAVQH 726
Query: 743 TAVAALANLLSDPDIAAEVLLE----DVVSALTRVLAEGTSEGKKNASRALHQLLK 794
+ + N+++ + A+ L E +++S L ++ + ++ ++ A++ L +
Sbjct: 727 RGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 3e-31
Identities = 121/824 (14%), Positives = 271/824 (32%), Gaps = 100/824 (12%)
Query: 1236 STEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENI 1295
T + ++ + F I + ++ N L+ VL GA L+
Sbjct: 3 KTSTKVKQMMDLTFDLATPI--DKRRAAANNLV-VLAKEQTGAE--------LLYK---- 47
Query: 1296 KDSDLAGQAVPPLVDMLSAASECELEV-ALVALVKLTSGNTSKACLLTDIDGNLLESLYK 1354
+ + + + ++ V + + L + + + G + +
Sbjct: 48 ------DHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELG--VPWFMR 99
Query: 1355 ILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFE 1414
+L E + A+ C NA ++ +P L + +++ +
Sbjct: 100 VLDQKH--ENCVSTAQFCLQTILNA--LSGLKNKPDSKPDKELCT-RNNREIDTLLTCLV 154
Query: 1415 RLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGII 1474
+ D V++L+ R V T E V + R +L V + +
Sbjct: 155 YSITDRTISGAARDG-VIELITRNVHYTALEWAERLV-------EIRGLCRLLDVCSELE 206
Query: 1475 DN-CLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQH 1533
D + + S+ L RI N + ++ L + +
Sbjct: 207 DYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLL-APDMESKV 265
Query: 1534 SALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQ 1593
A+ +L P + + +++ +L+ + Q++ E L +++ +
Sbjct: 266 RVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAK 325
Query: 1594 DITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADA----GGIFEIAKVIIQ 1649
+ + V L +L ++ A+ L K+ + + A G ++A+ +
Sbjct: 326 ALC-EQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRR 384
Query: 1650 -----------------------DDPQPPHSLWESAALV--LSNVLRFNTEYYFKVPVVV 1684
D + L E A + L ++ R + V
Sbjct: 385 FLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTT 444
Query: 1685 LVKMLHSTLESTITVALNALLI---------HERTDASSAEQ----MTQAGVIDALLDLL 1731
V + ++ + + + L HE D + + G+ AL L
Sbjct: 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA 504
Query: 1732 R--SHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALG 1789
+ SH +E R+L A+ +R V + + L + L+ +E GK A AL
Sbjct: 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEG---TEKGKRHATQALA 561
Query: 1790 DLSQH---EGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAE 1846
+ E S+ R L++LL+ T ++ AL N + + R+ + +
Sbjct: 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK 621
Query: 1847 AGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYV--SNELIRSLTAALERELWST 1904
G+ ++ L+ + + AA L + + + +N+ ++ L E E T
Sbjct: 622 EQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEET 681
Query: 1905 ATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSW 1964
AT L + + + + + A+ + L + + S A Q + + + N+
Sbjct: 682 ATACAGALAIITSVSVKCCEKILAIAS--WLDILHTLIANPSPAVQHRGIVIILNMINA- 738
Query: 1965 STMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCL 2008
++ + + + +L L + + + + CL
Sbjct: 739 -----GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCL 777
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-30
Identities = 103/722 (14%), Positives = 213/722 (29%), Gaps = 62/722 (8%)
Query: 254 VIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAP 313
+ + + L D + + + AL S++ K V+ GVP + +
Sbjct: 45 LYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQK 104
Query: 314 SKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALM 373
+ C+ + + + N G+ + R + ++ L Y++
Sbjct: 105 HENCVSTAQ------FCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSI- 157
Query: 374 VFEQKSGVDDEPFDARQIEDILVMLLK--PHDNKLVQERVLEAMASLYGNIFLSQWVSHA 431
D + ++ ++ + + ER++E G L S
Sbjct: 158 --------TDRTISGAARDGVIELITRNVHYTALEWAERLVEIR----GLCRLLDVCSEL 205
Query: 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQ-LLISLLGLSSEQH 490
E K + T + L ++ + I + L +
Sbjct: 206 EDYKYESAMDI--TGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMES 263
Query: 491 QEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI 550
+ I L D + A GI ++ + + ++ A I +D
Sbjct: 264 KVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDK 323
Query: 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL------------IRAADSATINQLL 598
+ G V L S + + + L KL + + +
Sbjct: 324 AKALCEQG-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEAC 382
Query: 599 ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAA 658
L K + + L + +K + +L+ + N+
Sbjct: 383 RRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVV 442
Query: 659 SVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718
+ +L C + E++ + L Q + +
Sbjct: 443 TTFVNL-------CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINK------RIT 489
Query: 719 SYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGT 778
EG L LAKT S ++ E L + ++ +V+ E V AL R+ EGT
Sbjct: 490 VLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGT 549
Query: 779 SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVAL 838
+GK++A++AL ++ G + V+ L++ L D + ++L +
Sbjct: 550 EKGKRHATQALARIGITINPEVSFSG-QRSLDVIRPLLNLLQQ-DCTALENFESLMALTN 607
Query: 839 LARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGD 898
LA + + + + L E L A + L L + +
Sbjct: 608 LASMNESV-------RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI--K 658
Query: 899 FLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYAL 958
+ + LA + E A L K L ++ +L L +
Sbjct: 659 MFEGNNDRVKFLA-LLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI 717
Query: 959 VD 960
+
Sbjct: 718 AN 719
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-29
Identities = 86/612 (14%), Positives = 173/612 (28%), Gaps = 65/612 (10%)
Query: 20 SQPRESNGTSAMDDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAK------- 72
S+ + SAMD S+ + + L +++ NM + + T +I K K
Sbjct: 203 SELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDME 262
Query: 73 ----------------KEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED 116
+ + + + + +++ + L + L +D
Sbjct: 263 SKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKD 322
Query: 117 LRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTL 176
K L + L L S++ R A L ++ S G D + +
Sbjct: 323 KA-KALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEA 381
Query: 177 WDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNA 236
+ K +D ++ + L L D + + + + ++ L N +
Sbjct: 382 CRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGV 441
Query: 237 ASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKA 296
+ L A+ + +++L + + + K
Sbjct: 442 VTTFVNLCNAYE-------KQEMLPEMIELA----KFAKQHIPEEHELDDVDFINKRITV 490
Query: 297 VVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANI------------YGGMPAL 344
+ L S Q R L + GG+ AL
Sbjct: 491 LANEGITTALCALAKTESHNS---------QELIARVLNAVCGLKELRGKVVQEGGVKAL 541
Query: 345 VVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDN 404
+ E ++ + A A A + V + + L+ LL+
Sbjct: 542 LRMALEGTEKGKRHA-------TQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCT 594
Query: 405 KLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRRE 463
L L A+ +L N + Q + + + + + L L E
Sbjct: 595 ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE 654
Query: 464 VGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA-AGGIPPLV 522
I G + ++ L L E+ +AI+T I A A + L
Sbjct: 655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILH 714
Query: 523 QLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMAL 582
L+ S + ++ + E+I + + L + A +A
Sbjct: 715 TLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVAT 774
Query: 583 TKLIRAADSATI 594
L A I
Sbjct: 775 QCLAAAERYRII 786
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 68.7 bits (167), Expect = 2e-11
Identities = 104/853 (12%), Positives = 237/853 (27%), Gaps = 103/853 (12%)
Query: 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAA-HVLWILC 544
+ + A + +L ++ ++ + I + L + + V H++ LC
Sbjct: 20 TPIDKRRAAANNLVVLAKEQTGAE-LLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALC 78
Query: 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGD 604
+S + V + VP F+ +L + L ++ A
Sbjct: 79 ENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKEL 138
Query: 605 SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664
+ + +L ++ + G+A + + + + ++ + E E V
Sbjct: 139 CTRNNREIDTLLTCLVYSITDRTI--SGAARDGVIELITRNVHYTALEWAE--RLVEIRG 194
Query: 665 FSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEG 724
D+C L ++ +T ++ +A+ L + +
Sbjct: 195 LCRLLDVCSEL--EDYKYESAMDITGSSSTIASV---CLARIYENMYYDEAKAR--FTDQ 247
Query: 725 DVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLED-VVSALTRVLAEGTSEGK 782
+ + +++ A+ LL+ D+ +V+ + ++ + + +
Sbjct: 248 IDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQ 307
Query: 783 KNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVAL--LA 840
+ A L + + + VD L + + D +V L L
Sbjct: 308 RVACECLIAASSK---------KDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLG 358
Query: 841 RTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFL 900
P A + ++ A + L+ L D + L
Sbjct: 359 SYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECK--EKL 416
Query: 901 MARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVD 960
+ +SI AL D + + + K++ + P + L
Sbjct: 417 IEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEML----------PEMIELAK 466
Query: 961 MMKQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRN 1020
KQ+ E + D D F+
Sbjct: 467 FAKQHIP---------------------EEHELDDVD-------------------FINK 486
Query: 1021 NNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRI 1080
+ G AL + + N Q I+ + A+
Sbjct: 487 RITVLANEGITTALCALAKTESHNSQE--------LIARVLNAVCGLKELRGKV-VQEGG 537
Query: 1081 IPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIIL-AIANSGAVAGLITLIGHIESDTP 1139
+ AL + + A QA+A + + + + + + L+ L+ +
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE 597
Query: 1140 NLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAV 1199
N +L L + VR + + + L A
Sbjct: 598 NFESLMALTNLASMNES-----------VRQRIIKEQGVSKIEYYLMEDHLYLTRA--AA 644
Query: 1200 RLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEA 1259
+ L +V D K+ + L +++ A L I +
Sbjct: 645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKIL 704
Query: 1260 SLSS-LNQLIAVLHLGSRGARLSAARALHQLFDA-ENIKDSDLAGQAVPPLVDMLSAASE 1317
+++S L+ L ++ S + + + +A E I + L + +
Sbjct: 705 AIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDD 764
Query: 1318 CELEVALVALVKL 1330
+ VA L
Sbjct: 765 TRAKAREVATQCL 777
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 134 bits (337), Expect = 5e-33
Identities = 72/463 (15%), Positives = 134/463 (28%), Gaps = 49/463 (10%)
Query: 124 GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183
G IP + L S+ + A + D+ +++ G + L D L
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQ---DESAKQQVY-QLGGICKLVDLLRSP 56
Query: 184 NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL-SSDNAAAQSNAASLLAR 242
N+ VQ GALRNL T G+ V LL + NA Q LL
Sbjct: 57 NQN---VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLW- 112
Query: 243 LMLAFGDSIPTVIDSGAVKALVQLV---------------GQNNDISVRASAADALEALS 287
L+ D + + + A+ L V + D V +A L LS
Sbjct: 113 -NLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLS 171
Query: 288 SKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALA-NIYGGMPALVV 346
S + + + L+ + + L+ + +P
Sbjct: 172 SADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR 231
Query: 347 YLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI--------LVML 398
L +++ + +M + +E + + + + L
Sbjct: 232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291
Query: 399 LKPHDNKLVQERVLEAMASL------YGNIFLSQWVSHAEAKKVLIGLITMATADVREYL 452
+ E A+ +L + + + L+ +DV
Sbjct: 292 MGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSG 351
Query: 453 ILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS------SEQHQEYAVQLIAILTEQVD 506
L+ + R + +G + + LL SE A + L
Sbjct: 352 ASLLSNMS-RHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP 409
Query: 507 DSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSE 548
++ + ++ L + S KA E A +L + E
Sbjct: 410 QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 2e-29
Identities = 68/438 (15%), Positives = 141/438 (32%), Gaps = 42/438 (9%)
Query: 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245
QD Q +++ C + + + GG+ +V LL S N Q AA L L+
Sbjct: 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73
Query: 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPV 305
+ ++ V L+ + + ++ L LS S K + AD +PV
Sbjct: 74 RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS--STDELKEELIADALPV 131
Query: 306 LIGAIVAPSKECMQGQRGQA-------LQGHATRALANI-------------YGGMPALV 345
L ++ P G + + +AT L N+ G + +L+
Sbjct: 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLM 191
Query: 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK----- 400
Y+ + R + + + L +
Sbjct: 192 AYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFS 251
Query: 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATAD-VREYLILSLTKL 459
+K++ + N S W+ H++A + + L+ + D E +L L
Sbjct: 252 NKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL 311
Query: 460 CRREVGIWE-----AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514
+ + K +G+ + LL + L++ ++ +
Sbjct: 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RHPLLHRVMG 369
Query: 515 AGGIPPLVQLLEAG------SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK 568
P + +LL + S+ A + + L + S+ + + L +
Sbjct: 370 NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429
Query: 569 SGG-PKGQDASAMALTKL 585
S PK +A+ + L+ +
Sbjct: 430 SSASPKAAEAARLLLSDM 447
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 87.2 bits (215), Expect = 1e-17
Identities = 54/359 (15%), Positives = 104/359 (28%), Gaps = 40/359 (11%)
Query: 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREV 535
I + L E++Q I Q + +K + GGI LV LL + +Q ++
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 536 AAHVLWILCCHSEDIRACVESAGAVPAFLWLL-KSGGPKGQDASAMALTKL------IRA 588
AA L L S + + + LL ++G + Q L L
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 589 ADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLV-------------QKGSAA 635
+ + L ++ + V+ + + Q
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMV 695
+ + SL+ + + ++ SV + + ++ L + +
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVL-HNLSYRLDAEVPTRYRQLEYNARNAYT 242
Query: 696 ATQSARALGALSRPTKTKTT------------NKMSYIAEGDVKPLIKLAKTSSIDA-AE 742
S S ++ + L S DA E
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLE 302
Query: 743 TAVAALANL------LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795
AL NL +S L E + + R+L G S+ ++ + L + +H
Sbjct: 303 ACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 85.7 bits (211), Expect = 4e-17
Identities = 64/468 (13%), Positives = 138/468 (29%), Gaps = 35/468 (7%)
Query: 215 AGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDIS 274
+ V LSS + Q+ A + + V G + LV L+ ++ + +
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQN 59
Query: 275 VRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRAL 334
V+ +AA AL L +S K +G+ + + + Q T L
Sbjct: 60 VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEI--------QKQLTGLL 111
Query: 335 ANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI 394
N+ + + L +I + S +P
Sbjct: 112 WNLSSTDELKEELI-----ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGC 166
Query: 395 LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLIL 454
L L + R + + + K + + +
Sbjct: 167 LRNLSSADAGR-QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAE 225
Query: 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514
T+ + E A ++ + + + + + +
Sbjct: 226 VPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPK----GSGWLYH 281
Query: 515 AGGIPPLVQLLEAGSQKA-REVAAHVLWILCCH-----SEDIRACVESAGAVPAFLWLLK 568
+ I + L+ + A E A L L S + +P LL+
Sbjct: 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ 341
Query: 569 SGGPKGQDASAMALT---------KLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHV 619
SG + A L+ +++ + +LL G++ +S+ + V
Sbjct: 342 SGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401
Query: 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEEN-QEYAASVLADLFS 666
+ + + K ++ L +++ + SS E A +L+D++S
Sbjct: 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 74.5 bits (182), Expect = 1e-13
Identities = 66/449 (14%), Positives = 135/449 (30%), Gaps = 54/449 (12%)
Query: 1560 IEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAGIGILNLQQT 1618
I + +L S Q +G + H Q E +Q + + LV L N+QQ
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 1619 AVKALEKISTSWPK---AVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNT- 1674
A AL + GI E ++ + + + +L N+ +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT---GNAEIQKQLTGLLWNLSSTDEL 120
Query: 1675 -EYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTDA-----------SSAEQ----- 1717
E + VL + N + SSA+
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTM 180
Query: 1718 MTQAGVIDALLDLLRSHQCEETSG-RLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTR 1776
+G+ID+L+ +++ + +E ++ Q + +
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240
Query: 1777 SESGKLLAA--------------LALGDLSQHEGLARASASVSACRALISLLEDQSTDEM 1822
L + + + A R ++L+ D
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300
Query: 1823 KMVAICALQNFVMCSRT-----NRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFS 1877
ALQN ++ + G+ + LL S N++V A L +
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360
Query: 1878 NHTLQEYVSNELIRSLTAALEREL---WSTATINEEVLRTLHVIFMNFPKLHTSEAATLC 1934
+ L + N++ +T L ++ I T+ + + P+L ++
Sbjct: 361 HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSM 420
Query: 1935 IPHLVGALKSGS-----EAAQGSVLDTLC 1958
+ +++ +S + EAA +L +
Sbjct: 421 LNNIINLCRSSASPKAAEAA-RLLLSDMW 448
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 1e-12
Identities = 63/466 (13%), Positives = 142/466 (30%), Gaps = 46/466 (9%)
Query: 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKG 574
IP VQ L + +K + + A+ + C E + V G + + LL+S
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60
Query: 575 QDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634
Q A+A AL L+ + + N+L + +L +Q+ L
Sbjct: 61 QQAAAGALRNLVFRSTT---NKLETRRQNGIRE----AVSLLRRTGNAEIQKQLTG---- 109
Query: 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQM 694
L+ L+S++E +E A L L + I + + R +
Sbjct: 110 -------LLWNLSSTDELKEELIADALPVL--ADRVIIPFSGWCDGNSNMSREVVDPE-- 158
Query: 695 VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD 754
V + L LS + + + + + + + A+ ++ N +
Sbjct: 159 VFFNATGCLRNLS----SADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCV 214
Query: 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGD-------VLKGNAQ 807
+ L +V + ++ + + +S + + + N +
Sbjct: 215 LHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPK 274
Query: 808 CRF------VVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPS 861
+ T ++ + + T A A AL T + +
Sbjct: 275 GSGWLYHSDAIRTYLNLMGKSKKDATLEACAG---ALQNLTASKGLMSSGMSQLIGLKEK 331
Query: 862 SIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLE 921
+ + L G + +LS + L ++S+ E
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSE 391
Query: 922 VRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSS 967
+ A + + Q S ++ ++++ + ++S
Sbjct: 392 DILSSACYTVRNLMASQPQLAKQYFSSS----MLNNIINLCRSSAS 433
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 4e-12
Identities = 65/444 (14%), Positives = 126/444 (28%), Gaps = 43/444 (9%)
Query: 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698
+ VQ L+S +E+ Q A + + + + + LL S Q V
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIK-LAKTSSIDAAETAVAALANLLSDPDI 757
+A AL L TTNK+ + ++ + L +T + + + L NL S D
Sbjct: 64 AAGALRNLV---FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL-SSTDE 119
Query: 758 AAEVLLEDVVSALTRVLAEGTS----------------EGKKNASRALHQLLKHFPVGDV 801
E L+ D + L + S E NA+ L L
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSA---DAG 176
Query: 802 LKGNAQCRFVVLTLVDSLNAMDMNGTDVADALE--VVALLARTKQGLNFTYPPWAALAEV 859
+ ++ +L+ + ++E + L + + + L
Sbjct: 177 RQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236
Query: 860 PSSIEPLVCCL-AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSS 918
+ + L ++ G + S +I + + S
Sbjct: 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK 296
Query: 919 SLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQ-------------- 964
A L S L G + + + +++
Sbjct: 297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLS 356
Query: 965 NSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVT 1024
N S L V + + E T + + + IL A + + + +
Sbjct: 357 NMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS--ACYTVRNLMASQPQLAKQ 414
Query: 1025 VMEAGALEALSDKLASYTSNPQAE 1048
+ L + + S S AE
Sbjct: 415 YFSSSMLNNIINLCRSSASPKAAE 438
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 9e-10
Identities = 66/487 (13%), Positives = 141/487 (28%), Gaps = 58/487 (11%)
Query: 1391 IQPLISLMQSDLSIVVESAVCAFERL--LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVE 1448
I + + S + D+ + ++ + + LV L+ N + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQNVQQ 62
Query: 1449 ATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARS 1508
A AL L T KL+ + I + LL + AE+ + LT S
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLL------RRTGNAEIQKQLTGLLWNLSS 116
Query: 1509 SDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLE 1568
+D K L+ AL L + + P S + E
Sbjct: 117 TDELK------EELIAD---------ALPVLADRVIIPFSGWCDGNSNMS--------RE 153
Query: 1569 SPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVP-LVQLAGIGILNLQQTAVKALEKIS 1627
+ T L +L + + +Q + + ++ L+ + + +
Sbjct: 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC 213
Query: 1628 TSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVK 1687
+ + + + + + + N Y +P
Sbjct: 214 VLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNP 273
Query: 1688 MLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEAL 1747
L + + L+ S + T AL +L S + L L
Sbjct: 274 KGSGWLYHSDAIRTYLNLM-----GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328
Query: 1748 FNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSAC 1807
G + +++ L Q+ + A L ++S+H L
Sbjct: 329 KEKG-----------LPQIARLL---QSGNSDVVRSGASLLSNMSRHPLL-HRVMGNQVF 373
Query: 1808 RALISLLED-----QSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNA 1862
+ LL +++++ A ++N + + + + + L S+ +
Sbjct: 374 PEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSAS 433
Query: 1863 EVAGQAA 1869
A +AA
Sbjct: 434 PKAAEAA 440
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 5e-09
Identities = 58/494 (11%), Positives = 140/494 (28%), Gaps = 81/494 (16%)
Query: 1302 GQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSS 1361
G +P V LS+ E + + + S + + G + L +L S +
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGG--ICKLVDLLRSPNQ 58
Query: 1362 LELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL--D 1418
+++ AA L ++F + I+ +SL++ + ++ + L
Sbjct: 59 -NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117
Query: 1419 DEQQVELVEGY--DVVDLLVRLVSG------------TNHRLVEATVCALIKLGKDRTPR 1464
DE + EL+ + D ++ SG + + L L R
Sbjct: 118 DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGR 177
Query: 1465 KLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQ 1524
+ +G+ID+ + + +A + + ++ DA +
Sbjct: 178 QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237
Query: 1525 PD--------------FSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESP 1570
+ ++ L P+ L S I L+ +
Sbjct: 238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSG--WLYHSDAIRTYLNLMGKS 295
Query: 1571 SHAIQQLGTELLTHLLAQEHFQQDITTKNAVV-------PLVQLAGIGILNLQQTAVKAL 1623
L + + +L G ++ ++ L
Sbjct: 296 KKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLL 355
Query: 1624 EKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVV 1683
+S + ++ + P ++
Sbjct: 356 SNMSRH------------PLLHRVMGNQVFPEV-----------------------TRLL 380
Query: 1684 VLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCE---ETS 1740
S E ++ A + + A+Q + +++ +++L RS E +
Sbjct: 381 TSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440
Query: 1741 GRLLEALFNNGRIR 1754
LL ++++ ++
Sbjct: 441 RLLLSDMWSSKELQ 454
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 2e-08
Identities = 63/503 (12%), Positives = 128/503 (25%), Gaps = 100/503 (19%)
Query: 1081 IPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPN 1140
IP L S + + A + C + + G + L+ L+
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHT-CFQDESAKQQVYQLGGICKLVDLLRS------- 55
Query: 1141 LVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVR 1200
P++ V + A
Sbjct: 56 -------------PNQNVQQA------------------------------------AAG 66
Query: 1201 LLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRY--E 1258
L +V S TNKL G+ L + + +T L L S +L
Sbjct: 67 ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA 126
Query: 1259 ASLSSLNQLIAVLHLGSRGARLS-------------AARALHQL-FDAENIKDSDLAGQA 1304
+L L + + G + A L L +
Sbjct: 127 DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGL 186
Query: 1305 VPPLVDMLSAASECE------LEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSS 1358
+ L+ + +E + L L+ ++ + Y SS
Sbjct: 187 IDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS 246
Query: 1359 N------SSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQ-SDLSIVVESAVC 1411
S + N N K S+ I+ ++LM S +E+
Sbjct: 247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAG 306
Query: 1412 AFERL------LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRK 1465
A + L + + + + RL+ N +V + L + +
Sbjct: 307 ALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLH 365
Query: 1466 LQMVKAGIIDNCLDLLPVAPS------ALCSTIAELFRILTNSSAIARSSDAAKIVEPLF 1519
M + L + L S + ++ + +A+ ++ ++ +
Sbjct: 366 RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425
Query: 1520 MVLLQPDFSLWGQHSALQALVNI 1542
+ +A L ++
Sbjct: 426 NLCRSSASPK-AAEAARLLLSDM 447
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 2e-07
Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 17/173 (9%)
Query: 82 HAQAMPLFISILRSGT-PLAKVNVAATLSVLCK------DEDLRLKVLLGGCIPPLLSLL 134
H+ A+ +++++ A L L +L L +P + LL
Sbjct: 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLL 340
Query: 135 KSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL---NPKNKQDNVVQ 191
+S ++D ++ A L +S H + + V P + L +
Sbjct: 341 QSGNSDVVRSGASLLSNMSR------HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394
Query: 192 GFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL-SSDNAAAQSNAASLLARL 243
+RNL + + + ++ I+ L SS + A A LL+ +
Sbjct: 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 8e-06
Identities = 65/466 (13%), Positives = 143/466 (30%), Gaps = 34/466 (7%)
Query: 1219 AGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGA 1278
+ +YLS + + F + + L + +L+ +L ++
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNV 60
Query: 1279 RLSAARALHQL-FDAENIKDSDLAGQAVPPLVDMLSAASECEL-EVALVALVKLTSGNTS 1336
+ +AA AL L F + K + V +L E+ + L L+S +
Sbjct: 61 QQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120
Query: 1337 KACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLIS 1396
K L+ D L + + S + + +F N A+ C++ L S
Sbjct: 121 KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN--------ATGCLRNLSS 172
Query: 1397 LMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIK 1456
++ S + V+ + ++ ++RL +
Sbjct: 173 ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232
Query: 1457 LGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVE 1516
L + + G N D + + + E S + S +
Sbjct: 233 LEYNARNAYTEKSSTGCFSNKSDKM--MNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLN 290
Query: 1517 PLFMVLLQPDFSLWGQHSALQALVNI----LEKPQSLVTLKLTPSQVIEPLLSFLESPSH 1572
L+ + AL N+ + L + + + L+S +
Sbjct: 291 -----LMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNS 345
Query: 1573 AIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILN------LQQTAVKALEKI 1626
+ + G LL+++ + + + +L N + +A + +
Sbjct: 346 DVVRSGASLLSNMSRHPLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL 404
Query: 1627 STSWP---KAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNV 1669
S P K + + I + + P + E+A L+LS++
Sbjct: 405 MASQPQLAKQYFSSSMLNNI--INLCRSSASPKA-AEAARLLLSDM 447
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 1e-32
Identities = 73/492 (14%), Positives = 160/492 (32%), Gaps = 70/492 (14%)
Query: 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIP--- 252
GA+ + ++ ++ S + Q +A R +L+ + P
Sbjct: 1 GAM-GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKF-RKLLSKEPNPPIDE 58
Query: 253 TVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312
+ G V V+ + + + +++ +A L ++S + + V+ A VP+ I + +
Sbjct: 59 VISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS 118
Query: 313 PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYAL 372
++ +Q A AL NI G Y+ + L
Sbjct: 119 EFED---------VQEQAVWALGNIAGDSTMCRDYVLDC--------------NIL---- 151
Query: 373 MVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHA 431
L+ L + + + A+++L G ++ +
Sbjct: 152 --------------------PPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVS 191
Query: 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQ 491
VL L+ ++ DV +L+ L +A+ + L+ LL + +
Sbjct: 192 PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251
Query: 492 EYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551
A++ + + D I + L+ LL + + ++ A + + +
Sbjct: 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQI 311
Query: 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQ---------LLALLL 602
V A PA + +L++ + + +A A+T + I L LL
Sbjct: 312 QTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLT 371
Query: 603 GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN--------KGLRSLVQVLNSSNEENQ 654
+ L ++L + QE GL + + + N+E
Sbjct: 372 VMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIY 431
Query: 655 EYAASVLADLFS 666
+ A ++ F
Sbjct: 432 QKAFDLIEHYFG 443
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 2e-31
Identities = 77/468 (16%), Positives = 159/468 (33%), Gaps = 55/468 (11%)
Query: 106 ATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMK 165
+ + G ++ ++ S+S + + +A + ++ S + +
Sbjct: 1 GAMGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPID--E 58
Query: 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL 225
+ T GVV + L K K++ +Q L N+ R ++AG V I + LL
Sbjct: 59 VISTPGVVARFVEFL--KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL 116
Query: 226 SSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEA 285
SS+ Q A L + V+D + L+QL + N +++ +A AL
Sbjct: 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176
Query: 286 LSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALV 345
L + + + VL + + + A AL+ + G +
Sbjct: 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTD---------VLADACWALSYLSDGPNDKI 227
Query: 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405
+ + A + LV LL H++
Sbjct: 228 QAVID-----------AGVC---------------------------RRLVELLM-HNDY 248
Query: 406 LVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREV 464
V L A+ ++ G+ +Q + + A + L+ L++ +++ +++ +
Sbjct: 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR 308
Query: 465 GIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA-ILTEQVDDSKWAITAAGGIPPLVQ 523
+ + LIS+L + + ++ A I + + + G I PL
Sbjct: 309 AQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCD 368
Query: 524 LLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGG 571
LL K +VA + L + E G P + ++ G
Sbjct: 369 LLTVMDSKIVQVALNGLENILRLGEQEAKR-NGTGINPYCALIEEAYG 415
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-27
Identities = 58/414 (14%), Positives = 139/414 (33%), Gaps = 26/414 (6%)
Query: 395 LVMLLKPHDNKLVQERVLEA---MASLYGNIFLSQWVSHAEAKKVLIGLITMAT-ADVRE 450
++ ++ + Q + + S N + + +S + + ++
Sbjct: 25 MIEMIF-SKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQF 83
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
LT + + + + + I LL E QE AV + + +
Sbjct: 84 ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143
Query: 511 AITAAGGIPPLVQLLEAGSQ-KAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS 569
+ +PPL+QL ++ A L LC + + + WLL
Sbjct: 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV 203
Query: 570 GGPKGQDASAMALTKLIRAADSAT--------INQLLALLLGDSPSSKAHVIKVLGHVLT 621
+ AL+ L + +L+ LL+ + + ++ +G+++T
Sbjct: 204 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVT 263
Query: 622 MALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIV 681
+D+ + L+SL+ +L+S E ++ A ++++ + + ++ I
Sbjct: 264 ---GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320
Query: 682 NPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAA 741
+ +L + ++A A+ + + + + G +KPL L
Sbjct: 321 PALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYL--VELGCIKPLCDLLTVMDSKIV 378
Query: 742 ETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795
+ A+ L N+L + A+ + + + + L H
Sbjct: 379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLD-------KIEFLQSH 425
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 5e-23
Identities = 68/394 (17%), Positives = 136/394 (34%), Gaps = 44/394 (11%)
Query: 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLA 100
VA+F+E L + + + IA ++ A A+P+FI +L S
Sbjct: 66 VARFVEFL-KRKENCTLQFESAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLSSEFEDV 123
Query: 101 KVNVAATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKSESTDT-RKAAAEALYEVSSGGLS 158
+ L + D R VL +PPLL L ++ T + A AL + G
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG--- 180
Query: 159 DDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGV 218
+ + L L D V AL L + +A ++AG
Sbjct: 181 -KSPPPEFAKVSPCLNVLSWLL---FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVC 236
Query: 219 DIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRAS 278
+V LL ++ S A + ++ +++ A+++L+ L+ + S++
Sbjct: 237 RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKE 295
Query: 279 AADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANI- 337
A + +++ + + V+ A+ P LI + + A A+ N
Sbjct: 296 ACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRT---------RKEAAWAITNAT 346
Query: 338 -------------YGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDE 384
G + L L ++ + + + +++G
Sbjct: 347 SGGSAEQIKYLVELGCIKPLCDLLT--VMDSKIVQVALNGLENILRLGEQEAKRNGTGIN 404
Query: 385 PFDARQIE-----DILVMLLKPHDNKLVQERVLE 413
P+ IE D + L H+N+ + ++ +
Sbjct: 405 PY-CALIEEAYGLDKIEFLQS-HENQEIYQKAFD 436
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 7e-20
Identities = 61/340 (17%), Positives = 119/340 (35%), Gaps = 8/340 (2%)
Query: 1178 IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDST 1237
+ V+ L+ + + +LT I G+ I+ +AG + + LS +D
Sbjct: 66 VARFVEFLK-RKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQ 124
Query: 1238 EATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARL-SAARALHQLF-DAENI 1295
E + L I + Y + L L+ + +R +A AL L
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPP 184
Query: 1296 KDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKI 1355
+ + L +L + L A AL L+ G K + ID + L ++
Sbjct: 185 PEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAV--IDAGVCRRLVEL 242
Query: 1356 LSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFER 1415
L N + + I+ G+ + +Q L+ L+ S + + A
Sbjct: 243 LMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302
Query: 1416 L-LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQ-MVKAGI 1473
+ + Q++ V ++ L+ ++ R + A+ + +++ +V+ G
Sbjct: 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362
Query: 1474 IDNCLDLLPVAPSALCSTIAE-LFRILTNSSAIARSSDAA 1512
I DLL V S + L IL A+ +
Sbjct: 363 IKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTG 402
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 6e-19
Identities = 67/398 (16%), Positives = 141/398 (35%), Gaps = 25/398 (6%)
Query: 1067 QDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG-SKGIILAIANSGAVA 1125
Q N+ ++P + I + ++ S + A Q L+ + I I+ G VA
Sbjct: 9 QINNMEMAPGGV-ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67
Query: 1126 GLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARK-SIPLLVDI 1184
+ + E+ T + VL + ++ + ++P+ +++
Sbjct: 68 RFVEFLKRKENCTLQFESAW------------VLTNIASGNSLQTRIVIQAGAVPIFIEL 115
Query: 1185 LRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITEL 1244
L + AV L I S + + + L L + S + +
Sbjct: 116 LSS--EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWA 173
Query: 1245 FRILF-SNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIKDSDLAG 1302
L + LN L +L + A AL L + + +
Sbjct: 174 LSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDA 233
Query: 1303 QAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSL 1362
LV++L + AL A+ + +G+ + ++ ++ + L+SL +LSS
Sbjct: 234 GVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVI--LNCSALQSLLHLLSSPKE- 290
Query: 1363 ELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL--DD 1419
+K+ A + I GN I I + LIS++Q+ + A A
Sbjct: 291 SIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGS 350
Query: 1420 EQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKL 1457
+Q++ + + L L++ + ++V+ + L +
Sbjct: 351 AEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 8e-16
Identities = 65/380 (17%), Positives = 133/380 (35%), Gaps = 26/380 (6%)
Query: 584 KLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLV 643
+ A + ++ ++ SP + + +L+ + + S + V
Sbjct: 12 NMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPG-VVARFV 70
Query: 644 QVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARA 702
+ L N Q +A VL ++ S + V + LL+S + V Q+ A
Sbjct: 71 EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWA 130
Query: 703 LGALSRPTKTKTTNKMSYIAEGDVKPLIKLAK-TSSIDAAETAVAALANLLSDPDIAAE- 760
LG ++ T + + + PL++L + + AV AL+NL E
Sbjct: 131 LGNIA---GDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187
Query: 761 VLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFP--VGDVLKGNAQCRFVVLTLVDS 818
+ ++ L+ +L ++ +A AL L + V+ V LV+
Sbjct: 188 AKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAG-----VCRRLVEL 242
Query: 819 LNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQ 878
L + V+ AL V + + S+++ L+ L+ ++
Sbjct: 243 LM--HNDYKVVSPALRAVGNIVT-------GDDIQTQVILNCSALQSLLHLLSSPKESIK 293
Query: 879 DKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHK 938
+A +S + A + + ++I I+ ++ R A + A
Sbjct: 294 KEACWTISNITAGNRAQIQTVI---DANIFPALISILQTAEFRTRKEAAWAITNATSGGS 350
Query: 939 KQSMDALDLSGYLKPLIYAL 958
+ + L G +KPL L
Sbjct: 351 AEQIKYLVELGCIKPLCDLL 370
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 4e-15
Identities = 69/485 (14%), Positives = 147/485 (30%), Gaps = 79/485 (16%)
Query: 1418 DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKL--GKDRTPRKLQMVKAGIID 1475
+E+ G + ++ ++ + + KL + P + G++
Sbjct: 8 AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67
Query: 1476 NCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSA 1535
++ L + + + Q +
Sbjct: 68 RFVEFL-------------------------KRKENCTL-----------------QFES 85
Query: 1536 LQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QEHFQQD 1594
L NI + + + + L S +Q+ L ++ +
Sbjct: 86 AWVLTNIASGNSLQTR-IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 1595 ITTKNAVVPLVQLAGIGI-LNLQQTAVKALEKISTS---WPKAVADAGGIFEIAKVIIQD 1650
+ N + PL+QL L + + AV AL + P+ + + ++ ++
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 1651 DPQPPHSLWESAALVLSNVLRFNTEYYFKV----PVVVLVKMLHSTLESTITVALNALLI 1706
D + A LS + + V LV++L ++ AL A+
Sbjct: 205 DTD----VLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 1707 HERTDASSAEQMTQAGVIDALLDLLRSHQ---CEETSGRLLEALFNNGRIRQMKVSKYAI 1763
D + + + +LL LL S + +E + N Q +
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIF 320
Query: 1764 APLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASASVSA--CRALISLLEDQSTDE 1821
L L QT + AA A+ + + + V + L LL + +
Sbjct: 321 PALISIL---QTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDS-K 376
Query: 1822 MKMVAICALQNFVMCSRTNRRA-----------VAEAGGILVVQELLLSTNAEVAGQAA- 1869
+ VA+ L+N + + + EA G+ ++ L N E+ +A
Sbjct: 377 IVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFD 436
Query: 1870 LLTKF 1874
L+ +
Sbjct: 437 LIEHY 441
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 3e-14
Identities = 65/450 (14%), Positives = 128/450 (28%), Gaps = 72/450 (16%)
Query: 1559 VIEPLLSFLESPSHAIQQLGTELLTHLLAQEH---FQQDITTKNAVVPLVQLAGIGI-LN 1614
+ ++ + S S Q T+ LL++E + I+T V V+
Sbjct: 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 1615 LQQTAVKALEKI---STSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLR 1671
LQ + L I ++ + V AG + +++ + + E A L N+
Sbjct: 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED----VQEQAVWALGNIAG 136
Query: 1672 FNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLL 1731
+T + + ++ LL L
Sbjct: 137 DSTMC--------------------------------------RDYVLDCNILPPLLQLF 158
Query: 1732 RSHQCEETSGRLLEALFNNGRIR----QMKVSKYAIAPLSQYLLDPQTRSESGKLLAALA 1787
+ + AL N R + + + LS L A A
Sbjct: 159 SKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLL---FVSDTDVLADACWA 215
Query: 1788 LGDLSQH-EGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAE 1846
L LS +A CR L+ LL + A+ A+ N V + +
Sbjct: 216 LSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYK-VVSPALRAVGNIVTGDDIQTQVILN 274
Query: 1847 AGGILVVQELLLSTNAEVAGQAALLTKFLFSN--HTLQEYVSNELIRSLTAALERELWST 1904
+ + LL S + +A + + +Q + + +L + L+ +
Sbjct: 275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ---TAE 331
Query: 1905 ATINEEVLRTL-HVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNS 1963
+E + + + CI L L L+ L +
Sbjct: 332 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI--- 388
Query: 1964 WSTMPIDVAKSQAMIAAEAIPILQMLMKTC 1993
+ + + +A I L++
Sbjct: 389 -----LRLGEQEAKRNGTGINPYCALIEEA 413
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 9e-11
Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 18/172 (10%)
Query: 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKSESTDT 141
A+ + +L S K T+S + + V+ P L+S+L++ T
Sbjct: 275 CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRT 334
Query: 142 RKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNL 201
RK AA A+ +SGG S + + K V G + L D L D+ + L N+
Sbjct: 335 RKEAAWAITNATSGG-SAEQI--KYLVELGCIKPLCDLLTVM---DSKIVQVALNGLENI 388
Query: 202 C--GDKDG---------YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLAR 242
G+++ Y EA G+D I L S +N A L+
Sbjct: 389 LRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 63.4 bits (154), Expect = 4e-10
Identities = 64/326 (19%), Positives = 115/326 (35%), Gaps = 24/326 (7%)
Query: 1007 ALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILF 1066
+ W+L I+S V++AGA+ + L+S + Q + +W
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE-----QAVWALGNIAGDST 139
Query: 1067 QDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAG 1126
+ VL I+P L L + A S +C G S +
Sbjct: 140 MCRDYVLD---CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNV 196
Query: 1127 LITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILR 1186
L L+ ++D L++ + + Y + +K+ + D V LV++L
Sbjct: 197 LSWLLFVSDTDV-----LADACWALSYLSDGPNDKIQAVIDAGV-------CRRLVELLM 244
Query: 1187 PIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFR 1246
D P A+R + IV G D ++ L +L LS + + +
Sbjct: 245 H-NDYKVVSP-ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302
Query: 1247 ILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQA-- 1304
I N I+ + LI++L R AA A+ + + +
Sbjct: 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGC 362
Query: 1305 VPPLVDMLSAASECELEVALVALVKL 1330
+ PL D+L+ ++VAL L +
Sbjct: 363 IKPLCDLLTVMDSKIVQVALNGLENI 388
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 41/245 (16%), Positives = 75/245 (30%), Gaps = 16/245 (6%)
Query: 1762 AIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEG---LARASASVSACRALISLLEDQS 1818
+ + + + S +L A L E + ++ + L+ +
Sbjct: 21 ITSDMIEMIFSK---SPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE 77
Query: 1819 TDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAA-LLTKFLFS 1877
++ + L N + R V +AG + + ELL S +V QA L
Sbjct: 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGD 137
Query: 1878 NHTLQEYV-SNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIP 1936
+ ++YV ++ L ++ + T+ + L + + C+
Sbjct: 138 STMCRDYVLDCNILPPLLQLFSKQ--NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLN 195
Query: 1937 HLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPS 1996
L L L L S P D K QA+I A L L+
Sbjct: 196 VLSWLLFVSDTDVLADACWALSYL----SDGPND--KIQAVIDAGVCRRLVELLMHNDYK 249
Query: 1997 FHERA 2001
A
Sbjct: 250 VVSPA 254
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 57/327 (17%), Positives = 109/327 (33%), Gaps = 18/327 (5%)
Query: 1682 VVVLVKML-HSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETS 1740
V V+ L + + L ++ + QAG + ++LL S + E+
Sbjct: 66 VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS-EFEDVQ 124
Query: 1741 GRLLEALFN----NGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEG 1796
+ + AL N + R + + PL Q + A AL +L + +
Sbjct: 125 EQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN--RLTMTRNAVWALSNLCRGKS 182
Query: 1797 LARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQEL 1856
A VS C ++S L S ++ A AL +AV +AG + EL
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242
Query: 1857 LLSTNAEVAGQAA-LLTKFLFSNHTLQEYVSNE-LIRSLTAALERELWSTATINEEVLRT 1914
L+ + +V A + + + + + N ++SL L +I +E T
Sbjct: 243 LMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS---PKESIKKEACWT 299
Query: 1915 LHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKS 1974
+ I + P L+ L++ + + T +
Sbjct: 300 ISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNA-----TSGGSAEQI 354
Query: 1975 QAMIAAEAIPILQMLMKTCPPSFHERA 2001
+ ++ I L L+ + A
Sbjct: 355 KYLVELGCIKPLCDLLTVMDSKIVQVA 381
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 3e-30
Identities = 72/450 (16%), Positives = 151/450 (33%), Gaps = 46/450 (10%)
Query: 165 KIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGL 224
+ +P + L + + V+ L++LC D + G+ ++VGL
Sbjct: 42 PPNWRQPELPEVIAMLGF---RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGL 98
Query: 225 LSSDNAAAQSNAASLLARLMLAFGDSIPT---VIDSGAVKALVQLVGQNNDISVRASAAD 281
L A L ++FG + + V ALV+L+ + D+ +
Sbjct: 99 LDHPKKEVHLGACGALKN--ISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITG 156
Query: 282 ALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSK--ECMQGQRGQALQGHATRALANIYG 339
L LSS + K + + L ++ P E + + L N G
Sbjct: 157 TLWNLSSHD--SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAG 214
Query: 340 GMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLL 399
+ + E + R + D AL + + ++ + + D++ +E+ + +L
Sbjct: 215 CLRNVSSERSEARRKLRECDGLVD---ALIFIV-----QAEIGQKDSDSKLVENCVCLLR 266
Query: 400 K---------PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATA-DVR 449
P + + A + + + E ++ I L+ + +
Sbjct: 267 NLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326
Query: 450 EYLILSLTKLC----RREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV 505
E ++ LC I A+ + + + + LL E+ + A + L V
Sbjct: 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA--V 384
Query: 506 DDSKWAITAAGGIPPLVQLLEAGSQKAREV--------AAHVLWILCCHSEDIRACVESA 557
D + IP LV+ L G Q + + + + + + +
Sbjct: 385 DARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET 444
Query: 558 GAVPAFLWLLKSG--GPKGQDASAMALTKL 585
+ + + KSG K A+A+ L +
Sbjct: 445 QGIEKLVLINKSGNRSEKEVRAAALVLQTI 474
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 119 bits (298), Expect = 2e-27
Identities = 93/529 (17%), Positives = 167/529 (31%), Gaps = 66/529 (12%)
Query: 73 KEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLL 131
K +P I++L K N AA L LC ++ ++ V IP L+
Sbjct: 37 KGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLV 96
Query: 132 SLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQ 191
LL + A AL +S G D VP L L + +D +
Sbjct: 97 GLLDHPKKEVHLGACGALKNISFG---RDQDNKIAIKNCDGVPALVRLL--RKARDMDLT 151
Query: 192 GFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSI 251
+TG L NL D ++ + ++ + + R
Sbjct: 152 EVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR--------- 201
Query: 252 PTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADG-VPVLIGAI 310
SV + A L +SS+ +A++ + DG V LI +
Sbjct: 202 -----------------HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIV 244
Query: 311 VAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAY 370
E Q L + L N+ + + ++ A A Y
Sbjct: 245 ---QAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGY 301
Query: 371 ALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLS----- 425
L+ ++ I + LLK + E A+ +L +
Sbjct: 302 ELLFQ-------------PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR 348
Query: 426 QWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485
+ +A + L+T V + +L L E IGK L+ +L G
Sbjct: 349 SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA-RNKELIGKHAIPNLVKNLPGG 407
Query: 486 SSEQHQEYAVQLIA-------ILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVA 536
++ + + + ++ + GI LV + ++G S+K A
Sbjct: 408 QQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAA 467
Query: 537 AHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL 585
A VL + + E +R +E G + + + + Q + + + L
Sbjct: 468 ALVLQTIWGYKE-LRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDSTL 515
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 90.0 bits (222), Expect = 3e-18
Identities = 52/387 (13%), Positives = 111/387 (28%), Gaps = 64/387 (16%)
Query: 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKARE 534
+ +I++LG + + A + L + D K + GIP LV LL+ ++
Sbjct: 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHL 108
Query: 535 VAAHVLWIL-CCHSEDIRACVESAGAVPAFLWLLKSGGPKG-QDASAMALTKL------- 585
A L + +D + +++ VPA + LL+ + L L
Sbjct: 109 GACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168
Query: 586 --IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-------------EDLVQ 630
I + + + K L + +
Sbjct: 169 MEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARR 228
Query: 631 KGSAANKGLRSLVQVLNSSNEEN------QEYAASVLADLFSMRQDICGS---------- 674
K + + +L+ ++ + + E +L +L
Sbjct: 229 KLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPN 288
Query: 675 ---------------LATDEIVNPCMRLLT-SNTQMVATQSARALGAL-SRPTKTKTTNK 717
L E+V + LL S T + SA A+ L + +
Sbjct: 289 VANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR 348
Query: 718 MSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEV-------LLEDVVSAL 770
+ E + + L + A AL NL D + L++++
Sbjct: 349 SALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQ 408
Query: 771 TRVLAEGTSEGKKNASRALHQLLKHFP 797
+ + + +++++
Sbjct: 409 QNSSWNFSEDTVISILNTINEVIAENL 435
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 79.6 bits (195), Expect = 6e-15
Identities = 65/442 (14%), Positives = 140/442 (31%), Gaps = 51/442 (11%)
Query: 1560 IEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAGIGILNLQQT 1618
+ +++ L A++ L HL + + + D+ + LV L +
Sbjct: 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 1619 AVKALEKISTSWP----KAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNT 1674
A AL+ IS A+ + G+ + +++ + E L N L +
Sbjct: 110 ACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT---EVITGTLWN-LSSHD 165
Query: 1675 EYYFKV------PVVVLVKMLHSTLESTITVALNALLIHERT----------------DA 1712
++ + V + HS E I +
Sbjct: 166 SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSE 225
Query: 1713 SSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLD 1772
+ + G++DAL+ ++++ ++ S ++ + ++ +
Sbjct: 226 ARRKLRECDGLVDALIFIVQAEIGQKDS--------DSKLVENCVCLLRNLSYQVHREIP 277
Query: 1773 PQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQN 1832
R + A G + R ISLL++ T + + A+QN
Sbjct: 278 QAERYQEAAPNVANNTG--TSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQN 335
Query: 1833 FVMC----SRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNE 1888
R R A+ + + + +LL + + V A+ + L + +E +
Sbjct: 336 LCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKH 395
Query: 1889 LIRSLTAAL-----ERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALK 1943
I +L L + +L T++ + + T I LV K
Sbjct: 396 AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINK 455
Query: 1944 SGSEAAQGSVLDTLCLLRNSWS 1965
SG+ + + +L+ W
Sbjct: 456 SGNRSEKEVR-AAALVLQTIWG 476
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 78.1 bits (191), Expect = 2e-14
Identities = 54/377 (14%), Positives = 111/377 (29%), Gaps = 58/377 (15%)
Query: 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKG 574
+P ++ +L + AA L LC ++ ++ V +P + LL +
Sbjct: 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEV 106
Query: 575 QDASAMALTKLIRAADSAT---------INQLLALLL-GDSPSSKAHVIKVLGHVLTM-- 622
+ AL + D + L+ LL + L ++ +
Sbjct: 107 HLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS 166
Query: 623 -----------ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671
AL ++++ S + + + E A L ++ S R +
Sbjct: 167 IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEA 226
Query: 672 CGSLATDE-IVNPCMRLLTSNTQMVATQSARALGAL------------------------ 706
L + +V+ + ++ + + S +
Sbjct: 227 RRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286
Query: 707 ----SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAA-ETAVAALANLLSD-----PD 756
+ + V+ I L K S A E + A+ NL +
Sbjct: 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRY 346
Query: 757 IAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLV 816
I + + E +SA+ +L K AS AL L +++ +A V
Sbjct: 347 IRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPG 406
Query: 817 DSLNAMDMNGTDVADAL 833
N+ D ++
Sbjct: 407 GQQNSSWNFSEDTVISI 423
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 71.5 bits (174), Expect = 2e-12
Identities = 66/435 (15%), Positives = 145/435 (33%), Gaps = 41/435 (9%)
Query: 1264 LNQLIAVLHLGSRGARLSAARALHQL-FDAENIKDSDLAGQAVPPLVDMLSAASECELEV 1322
L ++IA+L + +AA L L + + +K + +P LV +L +
Sbjct: 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLG 109
Query: 1323 ALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKII 1382
A AL ++ G + + + + + +L ++L ++L + + + I
Sbjct: 110 ACGALKNISFGR-DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIK 168
Query: 1383 ANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGT 1442
I + L + S + + + V + L + S
Sbjct: 169 M-EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVL----TNTAGCLRNVSSER 223
Query: 1443 N-----HRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFR 1497
+ R + V ALI + + + + +++NC+ LL + I + R
Sbjct: 224 SEARRKLRECDGLVDALIFIV--QAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281
Query: 1498 I----------LTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILE--- 1544
S A V +++ LL+ + ++ A+ N+
Sbjct: 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRW 341
Query: 1545 KPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPL 1604
+ L + + + L + + + + L +L ++ I K+A+ L
Sbjct: 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNL 400
Query: 1605 VQLAGIGILNLQQT--------AVKALEKISTSWP---KAVADAGGIFEIAKVIIQDDPQ 1653
V+ G N + + ++ K + + GI ++ V+I
Sbjct: 401 VKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKL--VLINKSGN 458
Query: 1654 PPHSLWESAALVLSN 1668
+AALVL
Sbjct: 459 RSEKEVRAAALVLQT 473
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 66.5 bits (161), Expect = 6e-11
Identities = 75/494 (15%), Positives = 164/494 (33%), Gaps = 53/494 (10%)
Query: 1299 DLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSS 1358
+ G+ VP D A + E +A + + L + +L
Sbjct: 5 FMIGEEVPS--DQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPE---LPEVIAMLGF 59
Query: 1359 NSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL 1417
+K NAA L + + N K+ + + I L+ L+ V A A + +
Sbjct: 60 -RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS 118
Query: 1418 ---DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGII 1474
D + ++ + V L+ L + L E L L + + + A
Sbjct: 119 FGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHA 178
Query: 1475 DNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHS 1534
++P + R + S + ++ + V + G
Sbjct: 179 LTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVD 238
Query: 1535 ALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQD 1594
AL +V Q+ + K + S+++E + L + S+ + + + + A + +
Sbjct: 239 ALIFIV------QAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANN 292
Query: 1595 ITTKN-----------AVVPLVQLAGIGILN-LQQTAVKALEKISTSWPK-------AVA 1635
T V + L + + + A++ + A+
Sbjct: 293 TGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALR 352
Query: 1636 DAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRF--NTEYYFKVPVVVLVKMLHST- 1692
+ IA ++ + + + ++A+ L N+ N E K + LVK L
Sbjct: 353 QEKALSAIADLLTNEHER----VVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQ 408
Query: 1693 -------LESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGR--- 1742
E T+ LN + + +A+++ + I+ L+ + +S E R
Sbjct: 409 QNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAA 468
Query: 1743 -LLEALFNNGRIRQ 1755
+L+ ++ +R+
Sbjct: 469 LVLQTIWGYKELRK 482
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 60.0 bits (144), Expect = 5e-09
Identities = 57/426 (13%), Positives = 127/426 (29%), Gaps = 37/426 (8%)
Query: 1493 AELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTL 1552
A + L + ++ P+ + LL A AL NI +
Sbjct: 69 AAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-KKEVHLGACGALKNISFGRDQDNKI 127
Query: 1553 KLTPSQVIEPLLSFL-ESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIG 1611
+ + L+ L ++ + ++ T L +L + + + +I +A+ L I
Sbjct: 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV-DHALHALTDEVIIP 186
Query: 1612 ILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLR 1671
++ + + W + + G + + + L +++
Sbjct: 187 HSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLREC-DGLVDALIFIVQ 245
Query: 1672 FNTEYYFKVPVVVL--VKMLHSTLESTITVALNALLIHE----------RTDASSAEQMT 1719
+V V +L + A E + A E +
Sbjct: 246 AEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLF 305
Query: 1720 QAGVIDALLDLLRSHQCEETSGRLLEALFN--------NGRIRQMKVSKYAIAPLSQYLL 1771
Q V+ + LL+ + A+ N IR + A++ ++ L
Sbjct: 306 QPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLL- 364
Query: 1772 DPQTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMV------ 1825
E A+ AL +L+ + A L+ L +
Sbjct: 365 --TNEHERVVKAASGALRNLAVDARN-KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVI 421
Query: 1826 -AICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQ--AALLTKFLFSNHTLQ 1882
+ + + + + + E GI + + S N AAL+ + ++ L+
Sbjct: 422 SILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELR 481
Query: 1883 EYVSNE 1888
+ + E
Sbjct: 482 KPLEKE 487
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 58.4 bits (140), Expect = 2e-08
Identities = 57/450 (12%), Positives = 129/450 (28%), Gaps = 56/450 (12%)
Query: 1010 LLLIISSFLRNNNV-TVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAIL-FQ 1067
L + S + L + L ++ +A +L L ++
Sbjct: 28 SLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSN---------AAAYLQHLCYR 78
Query: 1068 DANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGL 1127
+ + ++ IP L LL + A A+ ++ + +AI N V L
Sbjct: 79 NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138
Query: 1128 ITLIGH---------------------------IESDTPNLVALSEEFFLVRYPDEVVLE 1160
+ L+ ++ L +
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDC 198
Query: 1161 KLFEIEDVRVGSTARKSIPLL----VDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIM 1216
K IE V + + + + R + + G + ++ + D++ ++
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258
Query: 1217 AEAGG----LDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLH 1272
L + EA S + I++L
Sbjct: 259 ENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK 318
Query: 1273 LGSR-GARLSAARALHQL-----FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVA 1326
++A A+ L I+ + +A+ + D+L+ E ++ A A
Sbjct: 319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGA 378
Query: 1327 LVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELC----FIMFGNAKII 1382
L L +K + NL+++L ++S + + ++ N +
Sbjct: 379 LRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAA 438
Query: 1383 ANPIASECIQPLISLMQSDLSIVVESAVCA 1412
++ I+ L+ + +S E A
Sbjct: 439 KKLRETQGIEKLVLINKSGNRSEKEVRAAA 468
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 3e-30
Identities = 60/257 (23%), Positives = 108/257 (42%), Gaps = 18/257 (7%)
Query: 82 HAQAMPLFISILRSGTPLAKVNVAATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKSESTD 140
H +P L S +++ S + D + V+ G +P L+ LL S +
Sbjct: 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ 69
Query: 141 TRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200
+ A AL ++SG ++ + + + G +P L L + + + AL N
Sbjct: 70 ILQEALWALSNIASG--GNEQI--QAVIDAGALPALVQLL---SSPNEQILQEALWALSN 122
Query: 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAV 260
+ + +A ++AG + +V LLSS N A L+ + + I VID+GA+
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 182
Query: 261 KALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320
ALVQL+ + + + A AL ++S + K+AV A + L +++
Sbjct: 183 PALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK---- 237
Query: 321 QRGQALQGHATRALANI 337
+Q A AL +
Sbjct: 238 -----IQKEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 8e-29
Identities = 53/259 (20%), Positives = 106/259 (40%), Gaps = 32/259 (12%)
Query: 124 GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183
G +P + L S+ + +A ++ S ++ + + + G +P L L+
Sbjct: 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSD--GNEQI--QAVIDAGALPALVQLLS-- 64
Query: 184 NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARL 243
+ + AL N+ + +A ++AG + +V LLSS N A L+ +
Sbjct: 65 -SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123
Query: 244 MLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGV 303
+ I VID+GA+ ALVQL+ + + + A AL ++S + +AV+ A +
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 182
Query: 304 PVLIGAIVAPSKECMQGQRGQALQGHATRALANI-------------YGGMPALVVYLGE 350
P L+ + +P+++ + A AL+NI G + L
Sbjct: 183 PALVQLLSSPNEQ---------ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS- 232
Query: 351 LSQSPRLAAPVADIIGALA 369
++ ++ + + L
Sbjct: 233 -HENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 49/287 (17%), Positives = 104/287 (36%), Gaps = 43/287 (14%)
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
+P + Q L + + + A + + V AGA+PA + LL S
Sbjct: 7 HHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP 66
Query: 571 GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630
+ + AL+ + VI
Sbjct: 67 NEQILQEALWALSN----------------IASGGNEQIQAVID---------------- 94
Query: 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS 690
L +LVQ+L+S NE+ + A L+++ S + ++ + ++LL+S
Sbjct: 95 -----AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAE-GDVKPLIKLAKTSSIDAAETAVAALA 749
+ + ++ AL ++ ++ + + G + L++L + + + A+ AL+
Sbjct: 150 PNEQILQEALWALSNIAS----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 205
Query: 750 NLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795
N+ S + V + L ++ + + +K A AL +L H
Sbjct: 206 NIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 3e-23
Identities = 52/276 (18%), Positives = 101/276 (36%), Gaps = 40/276 (14%)
Query: 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREV 535
+ + L Q Q A + + + ++ A+ AG +P LVQLL + +++ +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 536 AAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATIN 595
A L + + V AGA+PA + LL S + + AL+ +
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA--------- 124
Query: 596 QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQE 655
VI L +LVQ+L+S NE+ +
Sbjct: 125 -------SGGNEQIQAVI---------------------DAGALPALVQLLSSPNEQILQ 156
Query: 656 YAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT 715
A L+++ S + ++ + ++LL+S + + ++ AL ++
Sbjct: 157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---NE 213
Query: 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751
K + G ++ L +L + + A AL L
Sbjct: 214 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 1e-22
Identities = 58/247 (23%), Positives = 105/247 (42%), Gaps = 12/247 (4%)
Query: 45 LEQLHANMSSPQERELI--TMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKV 102
L Q+ ++S +E + T + I E + A A+P + +L S
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVID-AGALPALVQLLSSPNEQILQ 72
Query: 103 NVAATLS-VLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDH 161
LS + + V+ G +P L+ LL S + + A AL ++SG ++
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQ 130
Query: 162 VGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDII 221
+ + + G +P L L+ N+Q + AL N+ + +A ++AG + +
Sbjct: 131 I--QAVIDAGALPALVQLLSSPNEQ---ILQEALWALSNIASGGNEQIQAVIDAGALPAL 185
Query: 222 VGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAAD 281
V LLSS N A L+ + + V ++GA++ L QL + + ++ A +
Sbjct: 186 VQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ-SHENEKIQKEAQE 244
Query: 282 ALEALSS 288
ALE L S
Sbjct: 245 ALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-21
Identities = 57/300 (19%), Positives = 111/300 (37%), Gaps = 50/300 (16%)
Query: 248 GDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLI 307
S + + Q + ++D+ + SA + S + +AV+ A +P L+
Sbjct: 2 RGSHHHHHHGSELPQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALV 60
Query: 308 GAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGA 367
+ +P+++ + A AL+NI S V D GA
Sbjct: 61 QLLSSPNEQ---------ILQEALWALSNI-------------ASGGNEQIQAVIDA-GA 97
Query: 368 LAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQ 426
L LV LL N+ + + L A++++ G Q
Sbjct: 98 L------------------------PALVQLLS-SPNEQILQEALWALSNIASGGNEQIQ 132
Query: 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS 486
V A A L+ L++ + + + +L+ + +A+ + L+ LL
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 192
Query: 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH 546
+EQ + A+ ++ + ++ K A+ AG + L QL ++K ++ A L L H
Sbjct: 193 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-18
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 2/192 (1%)
Query: 395 LVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLI 453
LV LL N+ + + L A++++ G Q V A A L+ L++ + + +
Sbjct: 59 LVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117
Query: 454 LSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513
+L+ + +A+ + L+ LL +EQ + A+ ++ + ++ A+
Sbjct: 118 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 177
Query: 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPK 573
AG +P LVQLL + +++ + A L + + + V+ AGA+ L K
Sbjct: 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 574 GQDASAMALTKL 585
Q + AL KL
Sbjct: 238 IQKEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 6e-18
Identities = 46/257 (17%), Positives = 100/257 (38%), Gaps = 26/257 (10%)
Query: 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698
L + Q LNS + + Q A + + S + ++ + ++LL+S + + +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD-PDI 757
+ AL ++ + I G + L++L + + + A+ AL+N+ S +
Sbjct: 74 ALWALSNIASGG---NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
Query: 758 AAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVL---- 813
V+ + AL ++L+ + + A AL + GN Q + V+
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG--------GNEQIQAVIDAGAL 182
Query: 814 -TLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAE 872
LV L++ + + +AL ++ +A + ++E L +
Sbjct: 183 PALVQLLSSPNEQI--LQEALWALSNIASGGNEQ-------KQAVKEAGALEKLEQLQSH 233
Query: 873 GPPPLQDKAIEILSRLC 889
+Q +A E L +L
Sbjct: 234 ENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 51/273 (18%), Positives = 96/273 (35%), Gaps = 39/273 (14%)
Query: 395 LVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLI 453
+ L D+ Q + + Q V A A L+ L++ + + +
Sbjct: 17 MTQQLN-SDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 454 LSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513
+L+ + +A+ + L+ LL +EQ + A+ ++ + ++ A+
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPK 573
AG +P LVQLL + +++ + A L + + V AGA+PA + LL S +
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 195
Query: 574 GQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633
+ A L+ + K V +
Sbjct: 196 ILQEALWA----------------LSNIASGGNEQKQAVKE------------------- 220
Query: 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666
L L Q+ + NE+ Q+ A L L S
Sbjct: 221 --AGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 1e-14
Identities = 58/292 (19%), Positives = 110/292 (37%), Gaps = 63/292 (21%)
Query: 1080 IIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTP 1139
+P + L SD++ ++ A + + + S I A+ ++GA+ L+ L+
Sbjct: 13 ELPQMTQQLNSDDMQEQLSATRKFSQI-LSDGNEQIQAVIDAGALPALVQLLSS------ 65
Query: 1140 NLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAV 1199
P+E +L++ A+
Sbjct: 66 --------------PNEQILQE------------------------------------AL 75
Query: 1200 RLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEA 1259
L+ I G + + +AG L AL + LS + + + L I + I+
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 1260 SLSSLNQLIAVLHLGSRGARLSAARALHQL--FDAENIKDSDLAGQAVPPLVDMLSAASE 1317
+L L+ +L + A AL + E I+ AG A+P LV +LS+ +E
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG-ALPALVQLLSSPNE 194
Query: 1318 CELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAA 1369
L+ AL AL + SG + + + LE L ++ S + ++++ A
Sbjct: 195 QILQEALWALSNIASGGNEQKQAVKEAGA--LEKLEQLQSH-ENEKIQKEAQ 243
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 55/290 (18%), Positives = 116/290 (40%), Gaps = 50/290 (17%)
Query: 214 EAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDI 273
+ + L+SD+ Q +A ++++ + I VID+GA+ ALVQL+ + +
Sbjct: 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNE 68
Query: 274 SVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRA 333
+ A AL ++S + +AV+ A +P L+ + +P+++ + A A
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ---------ILQEALWA 119
Query: 334 LANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIED 393
L+NI G + + + A + A
Sbjct: 120 LSNIASGGNEQIQAVID-----------AGALPA-------------------------- 142
Query: 394 ILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYL 452
LV LL + + + + L A++++ G Q V A A L+ L++ + +
Sbjct: 143 -LVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 200
Query: 453 ILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILT 502
+ +L+ + +A+ + ++ L L +E+ Q+ A + + L
Sbjct: 201 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 5e-14
Identities = 48/250 (19%), Positives = 99/250 (39%), Gaps = 8/250 (3%)
Query: 1296 KDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKI 1355
G +P + L++ E A ++ S + + ID L +L ++
Sbjct: 5 HHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAV--IDAGALPALVQL 62
Query: 1356 LSSNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFE 1414
LSS + ++ + A L I G + I I + + L+ L+ S +++ A+ A
Sbjct: 63 LSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 1415 RL-LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGI 1473
+ +Q++ V + LV+L+S N ++++ + AL + + ++ AG
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 181
Query: 1474 IDNCLDLLPVAPSALCSTIAE-LFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQ 1532
+ + LL + L I + + ++ A +E L LQ + Q
Sbjct: 182 LPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL--EQLQSHENEKIQ 239
Query: 1533 HSALQALVNI 1542
A +AL +
Sbjct: 240 KEAQEALEKL 249
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 6e-13
Identities = 59/298 (19%), Positives = 102/298 (34%), Gaps = 61/298 (20%)
Query: 1592 QQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWP---KAVADAGGIFEIAKVII 1648
+ + + Q + Q +A + +I + +AV DAG +
Sbjct: 5 HHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGAL-------- 56
Query: 1649 QDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHE 1708
P LV++L S E + AL AL
Sbjct: 57 -----PA-----------------------------LVQLLSSPNEQILQEALWALSNIA 82
Query: 1709 RTDASSAEQMTQAGVIDALLDLLRSH---QCEETSGRLLEALFN----NGRIRQMKVSKY 1761
+ + AG + AL+ LL S +E AL N Q +
Sbjct: 83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALW----ALSNIASGGNEQIQAVIDAG 138
Query: 1762 AIAPLSQYLLDPQTRSESGKLLAALALGDLSQH-EGLARASASVSACRALISLLEDQSTD 1820
A+ L Q L + +E A AL +++ +A A AL+ LL + +
Sbjct: 139 ALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-E 194
Query: 1821 EMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSN 1878
++ A+ AL N ++AV EAG + +++L N ++ +A + L S+
Sbjct: 195 QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 53/248 (21%), Positives = 104/248 (41%), Gaps = 14/248 (5%)
Query: 1388 SECIQPLISLMQSDLSIVVESAVCAFERLLDD-EQQVELVEGYDVVDLLVRLVSGTNHRL 1446
+ + + SD SA F ++L D +Q++ V + LV+L+S N ++
Sbjct: 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI 70
Query: 1447 VEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALCSTIAELFRILTNSSAI 1505
++ + AL + + ++ AG + + LL L + L I + +
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130
Query: 1506 ARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNIL----EKPQSLVTLKLTPSQVIE 1561
++ A + L +L P+ + AL AL NI E+ Q+++ + +
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQIQAVID-----AGALP 183
Query: 1562 PLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAGIGILNLQQTAV 1620
L+ L SP+ I Q L+++ + +Q + A+ L QL +Q+ A
Sbjct: 184 ALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243
Query: 1621 KALEKIST 1628
+ALEK+ +
Sbjct: 244 EALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 4e-10
Identities = 45/251 (17%), Positives = 85/251 (33%), Gaps = 13/251 (5%)
Query: 1713 SSAEQMTQAGVIDALLDLLRS---HQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQY 1769
S + + L S + + + + L + Q + A+ L Q
Sbjct: 3 GSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQL 62
Query: 1770 LLDPQTRSESGKLLAALALGDLSQH-EGLARASASVSACRALISLLEDQSTDEMKMVAIC 1828
L P +E A AL +++ +A A AL+ LL + +++ A+
Sbjct: 63 LSSP---NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALW 118
Query: 1829 ALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAAL-LTKFLFSNHTLQEY-VS 1886
AL N +AV +AG + + +LL S N ++ +A L+ + + +
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 178
Query: 1887 NELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGS 1946
+ +L L I +E L L I + + + L +
Sbjct: 179 AGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 235
Query: 1947 EAAQGSVLDTL 1957
E Q + L
Sbjct: 236 EKIQKEAQEAL 246
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 40/216 (18%), Positives = 83/216 (38%), Gaps = 8/216 (3%)
Query: 1430 DVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSAL 1488
+ + + ++ + + + ++ D + ++ AG + + LL L
Sbjct: 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQIL 71
Query: 1489 CSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQS 1548
+ L I + + ++ A + L +L P+ + AL AL NI
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNE 129
Query: 1549 LVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLA-QEHFQQDITTKNAVVPLVQL 1607
+ + + + L+ L SP+ I Q L+++ + Q + A+ LVQL
Sbjct: 130 QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188
Query: 1608 AGIGILNLQQTAVKALEKISTSWPK---AVADAGGI 1640
+ Q A+ AL I++ + AV +AG +
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 224
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 3e-30
Identities = 52/218 (23%), Positives = 94/218 (43%), Gaps = 17/218 (7%)
Query: 120 KVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ 179
G +P ++ L S ++A L +++SG ++ + + + G +P L
Sbjct: 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASG--GNEQI--QAVIDAGALPALVQL 62
Query: 180 LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASL 239
L+ + + AL N+ + +A ++AG + +V LLSS N A
Sbjct: 63 LS---SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 119
Query: 240 LARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVA 299
L+ + + I VID+GA+ ALVQL+ + + + A AL ++S + K+AV
Sbjct: 120 LSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQKQAVKE 178
Query: 300 ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANI 337
A + L E +Q + +Q A AL +
Sbjct: 179 AGALEKL---------EQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 1e-20
Identities = 42/242 (17%), Positives = 86/242 (35%), Gaps = 37/242 (15%)
Query: 425 SQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484
H ++ + + + L+++ +A+ + L+ LL
Sbjct: 5 HHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64
Query: 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILC 544
+EQ + A+ ++ + ++ A+ AG +P LVQLL + +++ + A L +
Sbjct: 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124
Query: 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGD 604
+ V AGA+PA + LL S + + AL+ + +
Sbjct: 125 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-------------- 170
Query: 605 SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664
++ + + G L L Q+ + NE+ Q+ A L L
Sbjct: 171 ------------------EQKQAVKEAG-----ALEKLEQLQSHENEKIQKEAQEALEKL 207
Query: 665 FS 666
S
Sbjct: 208 QS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 8e-19
Identities = 47/247 (19%), Positives = 88/247 (35%), Gaps = 42/247 (17%)
Query: 508 SKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL 567
S +P +VQ L + Q+ + A L + + V AGA+PA + LL
Sbjct: 4 SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63
Query: 568 KSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED 627
S + + AL+ N + VI
Sbjct: 64 SSPNEQILQEALWALS-----------N-----IASGGNEQIQAVID------------- 94
Query: 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRL 687
L +LVQ+L+S NE+ + A L+++ S + ++ + ++L
Sbjct: 95 --------AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146
Query: 688 LTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAE-GDVKPLIKLAKTSSIDAAETAVA 746
L+S + + ++ AL ++ + + E G ++ L +L + + A
Sbjct: 147 LSSPNEQILQEALWALSNIAS----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202
Query: 747 ALANLLS 753
AL L S
Sbjct: 203 ALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 3e-17
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 9/180 (5%)
Query: 65 ILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDED-LRLKVLL 123
+ IA E + A A+P + +L S LS + + V+
Sbjct: 36 LSQIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94
Query: 124 GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183
G +P L+ LL S + + A AL ++SG ++ + + + G +P L L
Sbjct: 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQI--QAVIDAGALPALVQLL--- 147
Query: 184 NKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARL 243
+ + + AL N+ + +A EAG ++ + L S +N Q A L +L
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 4e-14
Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 8/198 (4%)
Query: 1264 LNQLIAVLHLGSRGARLSAARALHQLFD--AENIKDSDLAGQAVPPLVDMLSAASECELE 1321
L Q++ L+ + SA R L Q+ E I+ AG A+P LV +LS+ +E L+
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAG-ALPALVQLLSSPNEQILQ 72
Query: 1322 VALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAE-LCFIMFGNAK 1380
AL AL + SG + + ID L +L ++LSS + ++ + A L I G +
Sbjct: 73 EALWALSNIASGGNEQIQAV--IDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNE 129
Query: 1381 IIANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDD-EQQVELVEGYDVVDLLVRLV 1439
I I + + L+ L+ S +++ A+ A + +Q + V+ ++ L +L
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189
Query: 1440 SGTNHRLVEATVCALIKL 1457
S N ++ + AL KL
Sbjct: 190 SHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 41/243 (16%)
Query: 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVI 613
+P + L S + ++ L+++ + + +
Sbjct: 8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIA-----------------SGGNEQIQAV 50
Query: 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICG 673
L +LVQ+L+S NE+ + A L+++ S +
Sbjct: 51 --------------------IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90
Query: 674 SLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA 733
++ + ++LL+S + + ++ AL + + I G + L++L
Sbjct: 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNI---ASGGNEQIQAVIDAGALPALVQLL 147
Query: 734 KTSSIDAAETAVAALANLLSD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792
+ + + A+ AL+N+ S + V + L ++ + + +K A AL +L
Sbjct: 148 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Query: 793 LKH 795
H
Sbjct: 208 QSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 44/209 (21%), Positives = 84/209 (40%), Gaps = 11/209 (5%)
Query: 339 GGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVML 398
+P +V L S + + +A EQ V DA + LV L
Sbjct: 12 SELPQMVQQLN--SPDQQELQSALRKLSQIASGGN--EQIQAV----IDAGALP-ALVQL 62
Query: 399 LKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLT 457
L N+ + + L A++++ G Q V A A L+ L++ + + + +L+
Sbjct: 63 LS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 458 KLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGG 517
+ +A+ + L+ LL +EQ + A+ ++ + ++ K A+ AG
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA 181
Query: 518 IPPLVQLLEAGSQKAREVAAHVLWILCCH 546
+ L QL ++K ++ A L L H
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 4/175 (2%)
Query: 1198 AVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRY 1257
A+R L+QI G + + +AG L AL + LS + + + L I + I+
Sbjct: 32 ALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91
Query: 1258 EASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIKDSDLAGQAVPPLVDMLSAAS 1316
+L L+ +L + A AL + + + A+P LV +LS+ +
Sbjct: 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 151
Query: 1317 ECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAEL 1371
E L+ AL AL + SG + + + LE L ++ S + ++++ A E
Sbjct: 152 EQILQEALWALSNIASGGNEQKQAVKEAGA--LEKLEQLQSHENE-KIQKEAQEA 203
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 42/189 (22%), Positives = 87/189 (46%), Gaps = 7/189 (3%)
Query: 1296 KDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKI 1355
G +P +V L++ + EL+ AL L ++ SG + + ID L +L ++
Sbjct: 5 HHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAV--IDAGALPALVQL 62
Query: 1356 LSSNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFE 1414
LSS + ++ + A L I G + I I + + L+ L+ S +++ A+ A
Sbjct: 63 LSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121
Query: 1415 RLL--DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAG 1472
+ +EQ +++ + LV+L+S N ++++ + AL + +K + +AG
Sbjct: 122 NIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180
Query: 1473 IIDNCLDLL 1481
++ L
Sbjct: 181 ALEKLEQLQ 189
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 44/199 (22%), Positives = 77/199 (38%), Gaps = 8/199 (4%)
Query: 1684 VLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSH---QCEETS 1740
+V+ L+S + + AL L + + AG + AL+ LL S +E
Sbjct: 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 75
Query: 1741 GRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEG-LAR 1799
L Q + A+ L Q L + +E A AL +++ +
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 1800 ASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLS 1859
A A AL+ LL + + A+ AL N ++AV EAG + +++L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 1860 TNAEVAGQAALLTKFLFSN 1878
N ++ +A + L S+
Sbjct: 192 ENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 46/254 (18%), Positives = 85/254 (33%), Gaps = 58/254 (22%)
Query: 1080 IIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTP 1139
+P + L S + + A + ++ + SG I A+ ++GA+ L+ L+
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQI-ASGGNEQIQAVIDAGALPALVQLLSS------ 65
Query: 1140 NLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAV 1199
P+E +L++ A+
Sbjct: 66 --------------PNEQILQE------------------------------------AL 75
Query: 1200 RLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEA 1259
L+ I G + + +AG L AL + LS + + + L I + I+
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 1260 SLSSLNQLIAVLHLGSRGARLSAARALHQLF-DAENIKDSDLAGQAVPPLVDMLSAASEC 1318
+L L+ +L + A AL + K + A+ L + S +E
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 195
Query: 1319 ELEVALVALVKLTS 1332
+ A AL KL S
Sbjct: 196 IQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 37/202 (18%), Positives = 83/202 (41%), Gaps = 6/202 (2%)
Query: 1344 IDGNLLESLYKILSSNSSLELKRNAA-ELCFIMFGNAKIIANPIASECIQPLISLMQSDL 1402
G+ L + + L+S + ++A +L I G + I I + + L+ L+ S
Sbjct: 9 HHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN 67
Query: 1403 SIVVESAVCAFERL-LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDR 1461
+++ A+ A + +Q++ V + LV+L+S N ++++ + AL +
Sbjct: 68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127
Query: 1462 TPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAE-LFRILTNSSAIARSSDAAKIVEPLFM 1520
+ ++ AG + + LL + L I + + ++ A +E L
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 187
Query: 1521 VLLQPDFSLWGQHSALQALVNI 1542
+ + + Q A +AL +
Sbjct: 188 LQSHENEKI--QKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 65 ILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD-EDLRLKVLL 123
+ IA E + A A+P + +L S LS + + + V
Sbjct: 120 LSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE 178
Query: 124 GGCIPPLLSLLKSESTDTRKAAAEALYEVSS 154
G + L L E+ +K A EAL ++ S
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 37/216 (17%), Positives = 80/216 (37%), Gaps = 8/216 (3%)
Query: 1375 MFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLLD-DEQQVELVEGYDVVD 1433
M G+ + + ++ + S ++SA+ ++ +Q++ V +
Sbjct: 1 MRGSHHHHHH---GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALP 57
Query: 1434 LLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCS-TI 1492
LV+L+S N ++++ + AL + + ++ AG + + LL + +
Sbjct: 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 117
Query: 1493 AELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTL 1552
L I + + ++ A + L +L P+ AL AL NI
Sbjct: 118 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ--ILQEALWALSNIASGGNEQKQA 175
Query: 1553 KLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ 1588
+ + +E L + IQ+ E L L +
Sbjct: 176 -VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 39/204 (19%), Positives = 85/204 (41%), Gaps = 13/204 (6%)
Query: 1431 VVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALC 1489
+ +V+ ++ + + +++ + L ++ + ++ AG + + LL L
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 1490 STIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNIL----EK 1545
+ L I + + ++ A + L +L P+ + AL AL NI E+
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQ 130
Query: 1546 PQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLL-AQEHFQQDITTKNAVVPL 1604
Q+++ + + L+ L SP+ I Q L+++ +Q + A+ L
Sbjct: 131 IQAVID-----AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185
Query: 1605 VQLAGIGILNLQQTAVKALEKIST 1628
QL +Q+ A +ALEK+ +
Sbjct: 186 EQLQSHENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 7e-06
Identities = 37/202 (18%), Positives = 70/202 (34%), Gaps = 10/202 (4%)
Query: 1762 AIAPLSQYLLDPQTRSESGKLLAALALGDLSQH-EGLARASASVSACRALISLLEDQSTD 1820
+ + Q L + + A L ++ +A A AL+ LL + +
Sbjct: 13 ELPQMVQQL---NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN-E 68
Query: 1821 EMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAAL-LTKFLFSNH 1879
++ A+ AL N +AV +AG + + +LL S N ++ +A L+ +
Sbjct: 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 128
Query: 1880 TLQEYVSNE-LIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHL 1938
+ V + + +L L I +E L L I + + + L
Sbjct: 129 EQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 185
Query: 1939 VGALKSGSEAAQGSVLDTLCLL 1960
+E Q + L L
Sbjct: 186 EQLQSHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 9e-06
Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 9/178 (5%)
Query: 1713 SSAEQMTQAGVIDALLDLLRSHQCE---ETSGRLLEALFNNGRIRQMKVSKYAIAPLSQY 1769
S + ++ L S + +L + Q + A+ L Q
Sbjct: 3 GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62
Query: 1770 LLDPQTRSESGKLLAALALGDLSQH-EGLARASASVSACRALISLLEDQSTDEMKMVAIC 1828
L P +E A AL +++ +A A AL+ LL +++ A+
Sbjct: 63 LSSP---NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALW 118
Query: 1829 ALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAAL-LTKFLFSNHTLQEYV 1885
AL N +AV +AG + + +LL S N ++ +A L+ + ++ V
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 176
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 35/187 (18%), Positives = 63/187 (33%), Gaps = 14/187 (7%)
Query: 1809 ALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQA 1868
++ L + A+ L +AV +AG + + +LL S N ++ +A
Sbjct: 16 QMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 1869 A-LLTKFLFSNHTLQEYVSNE-LIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLH 1926
L+ + + V + + +L L I +E L L I +
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQI 131
Query: 1927 TSEAATLCIPHLVGALKSGSEAAQGSVLDTLC-LLRNSWSTMPIDVAKSQAMIAAEAIPI 1985
+ +P LV L S +E L L + + QA+ A A+
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------NEQKQAVKEAGALEK 184
Query: 1986 LQMLMKT 1992
L+ L
Sbjct: 185 LEQLQSH 191
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 4e-25
Identities = 55/348 (15%), Positives = 108/348 (31%), Gaps = 56/348 (16%)
Query: 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL--- 525
G+ + + E AV ++ L+ ++ + A+ GG+ + +LL
Sbjct: 27 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVD 85
Query: 526 --------EAGSQKAREVAAHVLWILCCHSEDIRACV-ESAGAVPAFLWLLKSGGPKGQD 576
+ S R A L L +A + G + A + LKS Q
Sbjct: 86 CEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 145
Query: 577 ASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636
A L L AD + ++ L + G
Sbjct: 146 VIASVLRNLSWRADVNS-------------------------------KKTLREVG---- 170
Query: 637 KGLRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDE-----IVNPCMRLLTS 690
+++L++ E + S L +L + + + + +V +
Sbjct: 171 -SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
NT + L +S T ++ ++ L++ K+ S+ A L N
Sbjct: 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 289
Query: 751 L-LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFP 797
L +P + VS L ++ ++ AL L+ + P
Sbjct: 290 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 9e-24
Identities = 62/325 (19%), Positives = 113/325 (34%), Gaps = 29/325 (8%)
Query: 410 RVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEA 469
+LE Y +H + + L KL E A
Sbjct: 11 HLLE-QIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHA 68
Query: 470 IGKREGIQLLISLLGLSSEQH-----------QEYAVQLIAILTEQVDDSKWAITA-AGG 517
+ + G+Q + LL + E + + YA + LT +K + + G
Sbjct: 69 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128
Query: 518 IPPLVQLLEAGSQKAREVAAHVLWILCC-HSEDIRACVESAGAVPAFLWLLKSGG-PKGQ 575
+ LV L++ S+ ++V A VL L + + + G+V A +
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 188
Query: 576 DASAMAL---------TKLIRAADSATINQLLALLLGDSPSSKAHVIK----VLGHVLTM 622
+ AL K A + L+ L S ++ +I+ +L +V ++
Sbjct: 189 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 248
Query: 623 ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVN 682
+ ++ N L++L+Q L S + A L +L + +L V+
Sbjct: 249 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 308
Query: 683 PCMRLLTSNTQMVATQSARALGALS 707
L+ S +M+A SA AL L
Sbjct: 309 MLKNLIHSKHKMIAMGSAAALRNLM 333
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-23
Identities = 47/270 (17%), Positives = 95/270 (35%), Gaps = 14/270 (5%)
Query: 45 LEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNV 104
+ L + S R M + + + + S M ++ L+S + + +
Sbjct: 88 MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 147
Query: 105 AATLSVLC--KDEDLRLKVLLGGCIPPLLSLL-KSESTDTRKAAAEALYEVSSGGLSDDH 161
A+ L L D + + + G + L+ + + T K+ AL+ +S+
Sbjct: 148 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC---TE 204
Query: 162 VGMKIFVTEGVVPTLWDQLNPKNKQDNV-VQGFVTGALRNL---CGDKDGYWRATLEAGG 217
I +G + L L +++ + + + G LRN+ + + + E
Sbjct: 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 264
Query: 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277
+ ++ L S + SNA L L + D GAV L L+ + +
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAM 323
Query: 278 SAADALEALSSKS---IKAKKAVVAADGVP 304
+A AL L + K + +P
Sbjct: 324 GSAAALRNLMANRPAKYKDANIMSPGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 58/348 (16%), Positives = 111/348 (31%), Gaps = 51/348 (14%)
Query: 56 QERELITMRILT-IAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKD 114
+ +L I + +H M + + + L L D
Sbjct: 3 HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 62
Query: 115 EDLRLKVLLGGCIPPLLSLLKSE-----------STDTRKAAAEALYEVSSGGLSDDHVG 163
E+ R + G + + LL+ + S R+ A AL ++ G D
Sbjct: 63 EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG---DVANK 119
Query: 164 MKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL-EAGGVDIIV 222
+ +G + L QL +++ +Q + LRNL D + TL E G V ++
Sbjct: 120 ATLCSMKGCMRALVAQLKSESED---LQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176
Query: 223 GLL-SSDNAAAQSNAASLLARL-MLAFGDSIPTVIDSGAVKALVQLV---GQNNDISVRA 277
+ + S L L + GA+ LV + Q N +++
Sbjct: 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIE 236
Query: 278 SAADALEALSS---KSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRAL 334
S L +SS + ++ + + + L+ + + S + +A L
Sbjct: 237 SGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT---------IVSNACGTL 287
Query: 335 ANI-------------YGGMPALVVYLGELSQSPRLAAPVADIIGALA 369
N+ G + L + S+ +A A + L
Sbjct: 288 WNLSARNPKDQEALWDMGAVSMLKNLIH--SKHKMIAMGSAAALRNLM 333
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 1e-21
Identities = 60/414 (14%), Positives = 117/414 (28%), Gaps = 103/414 (24%)
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSI-PTVIDSGAVKALVQL--- 266
G+D + + A +L +L +F + + + G ++A+ +L
Sbjct: 27 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKL--SFDEEHRHAMNELGGLQAIAELLQV 84
Query: 267 -------VGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQ 319
+ I++R A AL L+ + K + + G
Sbjct: 85 DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG----------------- 127
Query: 320 GQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKS 379
M ALV L S+S L +A ++ L++
Sbjct: 128 --------------------CMRALVAQLK--SESEDLQQVIASVLRNLSW--------- 156
Query: 380 GVDDEPFDARQIEDI---LVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKV 436
D + L+ + + VL A+ +L +H K
Sbjct: 157 RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL---------SAHCTENKA 207
Query: 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQ 496
I G + + L ++ E
Sbjct: 208 DIC----------------------AVDGALAFL-----VGTLTYRSQTNTLAIIESGGG 240
Query: 497 LIAILTEQV---DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553
++ ++ + +D + + + L+Q L++ S A LW L + +
Sbjct: 241 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 300
Query: 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPS 607
+ GAV L+ S SA AL L+ + + + PS
Sbjct: 301 LWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLPS 354
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 1e-16
Identities = 57/375 (15%), Positives = 122/375 (32%), Gaps = 49/375 (13%)
Query: 1532 QHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHF 1591
H L L I ++ + ++ + + +P +L L E
Sbjct: 6 HHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH 65
Query: 1592 QQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDD 1651
+ + + + +L + T
Sbjct: 66 RHAMNELGGLQAIAELLQVDCEMYGLTN-------------------------------- 93
Query: 1652 PQPPHSLWESAALVLSNVLRFNTEYYFKVP-----VVVLVKMLHSTLESTITVALNALL- 1705
+L A + L+N+ + + + LV L S E V + L
Sbjct: 94 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 153
Query: 1706 IHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFN-----NGRIRQMKVSK 1760
+ R D +S + + + G + AL++ + E T +L AL+N +
Sbjct: 154 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 213
Query: 1761 YAIAPLSQYLLDP-QTRSESGKLLAALALGDLSQ----HEGLARASASVSACRALISLLE 1815
A+A L L QT + + L ++S +E + + + L+ L+
Sbjct: 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 273
Query: 1816 DQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFL 1875
S + A L N + ++ A+ + G + +++ L+ S + +A +A + L
Sbjct: 274 SHS-LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332
Query: 1876 FSNHTLQEYVSNELI 1890
+N + +N +
Sbjct: 333 MANRPAKYKDANIMS 347
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 73.0 bits (179), Expect = 2e-13
Identities = 44/310 (14%), Positives = 94/310 (30%), Gaps = 30/310 (9%)
Query: 1198 AVRLLTQIVDGSDT-NKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILF--SNPDL 1254
+ LL QI +T + A G+D + + + L ++ F +
Sbjct: 9 MLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHA 68
Query: 1255 IRYEASLSSLNQLIAVLHLGSRGARLS--------AARALHQL--FDAENIKDSDLAGQA 1304
+ L ++ +L+ V A AL L D N
Sbjct: 69 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 128
Query: 1305 VPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLEL 1364
+ LV L + SE +V L L+ T + +++L +
Sbjct: 129 MRALVAQLKSESEDLQQVIASVLRNLSWRA-DVNSKKTLREVGSVKALMECALEVKKEST 187
Query: 1365 KRNAAE----LCFIMFGNAKIIANPIASECIQPLISLM----QSDLSIVVESAVCAFERL 1416
++ L N I + L+ + Q++ ++ES +
Sbjct: 188 LKSVLSALWNLSAHCTENKADIC--AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245
Query: 1417 L-----DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKA 1471
+++ + L E + + L++ + + +V L L + +
Sbjct: 246 SSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 304
Query: 1472 GIIDNCLDLL 1481
G + +L+
Sbjct: 305 GAVSMLKNLI 314
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 3e-10
Identities = 48/267 (17%), Positives = 90/267 (33%), Gaps = 21/267 (7%)
Query: 1178 IPLLVDILRPIPDRPGAPPV---------AVRLLTQIVDGSDTNK-LIMAEAGGLDALTK 1227
+ + ++L+ + G A LT + G NK + + G + AL
Sbjct: 75 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA 134
Query: 1228 YLSLSPQDSTEATITELFRILFSNPDLIRYE-ASLSSLNQLIAVL-HLGSRGARLSAARA 1285
L +D + + L + + + + S+ L+ + S A
Sbjct: 135 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSA 194
Query: 1286 LHQL--FDAENIKDSDLAGQAVPPLVDMLSAASECE----LEVALVALVKLTSGNTSKAC 1339
L L EN D A+ LV L+ S+ +E L ++S +
Sbjct: 195 LWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNED 254
Query: 1340 LLTDI-DGNLLESLYKILSSNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISL 1397
+ + N L++L + L S SL + NA L + N K + L +L
Sbjct: 255 HRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNL 313
Query: 1398 MQSDLSIVVESAVCAFERLLDDEQQVE 1424
+ S ++ + A L+ +
Sbjct: 314 IHSKHKMIAMGSAAALRNLMANRPAKY 340
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 50/334 (14%), Positives = 102/334 (30%), Gaps = 47/334 (14%)
Query: 996 PDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGI 1055
P I L L SF + + E G L+A+++ L D I
Sbjct: 44 PVEHQICPAVCVLMKL----SFDEEHRHAMNELGGLQAIAE-LLQVDCEMYGLTNDHYSI 98
Query: 1056 WI-----SALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
+ AL AN + + AL L+S+ + A + +L
Sbjct: 99 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 158
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTP---------NLVALSEEFFLVRYPDEVVLEK 1161
+ G+V L+ ++ ++ NL A E ++
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE-----NKADICAVD 213
Query: 1162 LFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPV-----AVRLLTQIVDGSDTNKLIM 1216
++ LV L + +R ++ ++ ++ ++ I+
Sbjct: 214 --------------GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL 259
Query: 1217 AEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSR 1276
E L L ++L L+ + NP + +++ L ++H +
Sbjct: 260 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK 319
Query: 1277 GARLSAARALHQLFD----AENIKDSDLAGQAVP 1306
+ +A AL L + G ++P
Sbjct: 320 MIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 2e-08
Identities = 59/341 (17%), Positives = 107/341 (31%), Gaps = 62/341 (18%)
Query: 1685 LVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQ------CEE 1738
+ + +E I A+ L+ D M + G + A+ +LL+ +
Sbjct: 37 DKNPMPAPVEHQICPAVCVLM-KLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDH 95
Query: 1739 TSGRLLE----ALFN----NGRIRQMKVSKY-AIAPLSQYLLDPQTRSESGKLLAALALG 1789
S L AL N + + S + L L ++ SE + + A L
Sbjct: 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL---KSESEDLQQVIASVLR 152
Query: 1790 DLSQHEGLA--RASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEA 1847
+LS + + V + +AL+ + + + AL N N+ +
Sbjct: 153 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 212
Query: 1848 GGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTATI 1907
G L A L L + + +I S L R + S
Sbjct: 213 DGAL-----------------AFLVGTLTYRS---QTNTLAIIESGGGIL-RNVSSLIAT 251
Query: 1908 NEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTM 1967
NE+ + L C+ L+ LKS S + TL L
Sbjct: 252 NEDHRQIL--------------RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR---- 293
Query: 1968 PIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCL 2008
+ +A+ A+ +L+ L+ + + + L L
Sbjct: 294 --NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-24
Identities = 70/360 (19%), Positives = 126/360 (35%), Gaps = 37/360 (10%)
Query: 389 RQIEDILVMLLKPHDNKLVQERVLEAMASL-----YGNIFLSQWVSHAEAKKVLIGLITM 443
+ L ++ + R + + L Y +H +
Sbjct: 100 ARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPA 159
Query: 444 ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQH-----------QE 492
+ L KL E A+ + G+Q + LL + E + +
Sbjct: 160 PVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRR 218
Query: 493 YAVQLIAILTEQVDDSKWAITA-AGGIPPLVQLLEAGSQKAREVAAHVLWILCC-HSEDI 550
YA + LT +K + + G + LV L++ S+ ++V A VL L +
Sbjct: 219 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 278
Query: 551 RACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKL----------IRAADSATINQLLA 599
+ + G+V A + + AL L I A D A + L+
Sbjct: 279 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGA-LAFLVG 337
Query: 600 LLLGDSPSSKAHVIK----VLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQE 655
L S ++ +I+ +L +V ++ + ++ N L++L+Q L S +
Sbjct: 338 TLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 397
Query: 656 YAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS--RPTKTK 713
A L +L + +L V+ L+ S +M+A SA AL L RP K K
Sbjct: 398 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 4e-23
Identities = 45/251 (17%), Positives = 91/251 (36%), Gaps = 11/251 (4%)
Query: 45 LEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNV 104
+ L + S R M + + + + S M ++ L+S + + +
Sbjct: 204 MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVI 263
Query: 105 AATLSVLC--KDEDLRLKVLLGGCIPPLLSLL-KSESTDTRKAAAEALYEVSSGGLSDDH 161
A+ L L D + + + G + L+ + + T K+ AL+ +S+
Sbjct: 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH---CTE 320
Query: 162 VGMKIFVTEGVVPTLWDQLNPKNKQDNV-VQGFVTGALRNL---CGDKDGYWRATLEAGG 217
I +G + L L +++ + + + G LRN+ + + + E
Sbjct: 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380
Query: 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277
+ ++ L S + SNA L L + D GAV L L+ + +
Sbjct: 381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSKHKMIAM 439
Query: 278 SAADALEALSS 288
+A AL L +
Sbjct: 440 GSAAALRNLMA 450
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 4e-23
Identities = 81/557 (14%), Positives = 162/557 (29%), Gaps = 132/557 (23%)
Query: 52 MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVL 111
M S + ++ + L G+ + + +S+L + K +++ TL +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMRLTSHL-GTKVEMVYSLLSMLGTHD---KDDMSRTLLAM 56
Query: 112 CKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEG 171
+D + + GC+P L+ LL D+ +
Sbjct: 57 SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE---------------ARAR 101
Query: 172 VVPTLWD-QLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR-ATLEAGGVDIIVGLLSSDN 229
L + + + + + V L + + W G+D + +
Sbjct: 102 ASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPV 161
Query: 230 AAAQSNAASLLARLMLAFGDSI-PTVIDSGAVKALVQLV----------GQNNDISVRAS 278
A +L +L +F + + + G ++A+ +L+ + I++R
Sbjct: 162 EHQICPAVCVLMKL--SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRY 219
Query: 279 AADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY 338
A AL L+ + K L ++
Sbjct: 220 AGMALTNLTFGDVANK-------------------------------------ATLCSMK 242
Query: 339 GGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI---L 395
G M ALV L S+S L +A ++ L++ D + L
Sbjct: 243 GCMRALVAQLK--SESEDLQQVIASVLRNLSW---------RADVNSKKTLREVGSVKAL 291
Query: 396 VMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILS 455
+ + + VL A+ +L +H K I
Sbjct: 292 MECALEVKKESTLKSVLSALWNL---------SAHCTENKADI----------------- 325
Query: 456 LTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQL-------IAILTEQVDDS 508
+ L+ L S+ + ++ ++ L +D
Sbjct: 326 --------------CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 371
Query: 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK 568
+ + + L+Q L++ S A LW L + + + GAV L+
Sbjct: 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 431
Query: 569 SGGPKGQDASAMALTKL 585
S SA AL L
Sbjct: 432 SKHKMIAMGSAAALRNL 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-23
Identities = 74/392 (18%), Positives = 132/392 (33%), Gaps = 45/392 (11%)
Query: 394 ILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLI 453
+L+ LL +D V + A +I RE +
Sbjct: 74 LLIQLLHGNDKDSVLLGNSRGSKEARARA--------SAALHNIIHSQPDDKRGRREIRV 125
Query: 454 LSLTKLCRREV-GIWEAIGKRE-GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511
L L + R WE E G+ + + E AV ++ L+ ++ + A
Sbjct: 126 LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHA 184
Query: 512 ITAAGGIPPLVQLLEAG-----------SQKAREVAAHVLWILCCHSEDIRACV-ESAGA 559
+ GG+ + +LL+ S R A L L +A + G
Sbjct: 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244
Query: 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAADSA---------TINQLLALLL-GDSPSSK 609
+ A + LKS Q A L L AD ++ L+ L S+
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304
Query: 610 AHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEEN----QEYAASVLADLF 665
V+ L ++ A + A + L LV L ++ N E +L ++
Sbjct: 305 KSVLSALWNLS--AHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362
Query: 666 SM---RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIA 722
S+ +D L + + ++ L S++ + + + L LS ++ +
Sbjct: 363 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK---DQEALWD 419
Query: 723 EGDVKPLIKLAKTSSIDAAETAVAALANLLSD 754
G V L L + A + AAL NL+++
Sbjct: 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 95.4 bits (237), Expect = 3e-20
Identities = 59/357 (16%), Positives = 116/357 (32%), Gaps = 54/357 (15%)
Query: 50 ANMSSPQERELITMRILTIAKAKKEA----RLLIGSHAQAMPLFISILRSGTPLAKVNVA 105
+ +R +R+L + + + +H M + + +
Sbjct: 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAV 169
Query: 106 ATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSE-----------STDTRKAAAEALYEVSS 154
L L DE+ R + G + + LL+ + S R+ A AL ++
Sbjct: 170 CVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229
Query: 155 GGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL- 213
G D + +G + L QL +++ +Q + LRNL D + TL
Sbjct: 230 G---DVANKATLCSMKGCMRALVAQLKSESED---LQQVIASVLRNLSWRADVNSKKTLR 283
Query: 214 EAGGVDIIVGLL-SSDNAAAQSNAASLLARL-MLAFGDSIPTVIDSGAVKALVQLV---G 268
E G V ++ + + S L L + GA+ LV +
Sbjct: 284 EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 343
Query: 269 QNNDISVRASAADALEALSS---KSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQA 325
Q N +++ S L +SS + ++ + + + L+ + + S
Sbjct: 344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT--------- 394
Query: 326 LQGHATRALANI-------------YGGMPALVVYLGELSQSPRLAAPVADIIGALA 369
+ +A L N+ G + L + S+ +A A + L
Sbjct: 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH--SKHKMIAMGSAAALRNLM 449
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 4e-17
Identities = 78/435 (17%), Positives = 144/435 (33%), Gaps = 26/435 (5%)
Query: 521 LVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAM 580
+ LL ++ + L + S+D + +G +P + LL
Sbjct: 34 VYSLLSMLGTHDKDDMSRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNS 92
Query: 581 ALTKLIRAADSATINQLLALLLGDSPSSKA-HVIKVLGHVLTMALQEDLVQKGSAANKGL 639
+K RA SA ++ ++ D + V+ +L + A E + A G+
Sbjct: 93 RGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIR--AYCETCWEWQEAHEPGM 150
Query: 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQS 699
+ + E A VL L S ++ ++ + LL + +M +
Sbjct: 151 DQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTN 209
Query: 700 AR--------ALGALSRPTKTKTTNKMSYIA-EGDVKPLIKLAKTSSIDAAETAVAALAN 750
A AL+ T NK + + +G ++ L+ K+ S D + + L N
Sbjct: 210 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269
Query: 751 L--LSDPDIAAEVLLEDVVSALTRVLAEGTSEG-KKNASRALHQLLKHFPVGDVLKGNAQ 807
L +D + + V AL E E K+ AL L H +
Sbjct: 270 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT--ENKADICA 327
Query: 808 CRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLV 867
+ LV +L T +E + R L T + + ++ L+
Sbjct: 328 VDGALAFLVGTLTYRSQTNT--LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 385
Query: 868 CCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGA 927
L + A L L P + ++ L ++HS + +G A
Sbjct: 386 QHLKSHSLTIVSNACGTLWNLSARNPKDQE--ALWDMGAVSMLK-NLIHSKHKMIAMGSA 442
Query: 928 ALL--ICAAKEHKKQ 940
A L + A + K +
Sbjct: 443 AALRNLMANRPAKYK 457
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 2e-16
Identities = 65/455 (14%), Positives = 148/455 (32%), Gaps = 60/455 (13%)
Query: 1432 VDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCST 1491
V+++ L+S + L+ + + + M ++G + P+ L
Sbjct: 31 VEMVYSLLSMLGTHDKDDMSRTLLAMSSSQ-DSCISMRQSGCL-------PLLIQLLHGN 82
Query: 1492 IAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLW-GQHSALQALVNILEKPQSLV 1550
+ + + + + A+ + + + QPD + L L I ++
Sbjct: 83 DKDSVLLGNSRGSKEARARASAALHNI--IHSQPDDKRGRREIRVLHLLEQIRAYCETCW 140
Query: 1551 TLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGI 1610
+ ++ + + +P +L L E + + + + +L +
Sbjct: 141 EWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQV 200
Query: 1611 GILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVL 1670
T + +L A + L+N+
Sbjct: 201 DCEMYGLT--------------------------------NDHYSITLRRYAGMALTNLT 228
Query: 1671 RFNTEYYFKVP-----VVVLVKMLHSTLESTITVALNALL-IHERTDASSAEQMTQAGVI 1724
+ + + LV L S E V + L + R D +S + + + G +
Sbjct: 229 FGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV 288
Query: 1725 DALLDLLRSHQCEETSGRLLEALFN-----NGRIRQMKVSKYAIAPLSQYLLDP-QTRSE 1778
AL++ + E T +L AL+N + A+A L L QT +
Sbjct: 289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTL 348
Query: 1779 SGKLLAALALGDLSQH----EGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFV 1834
+ L ++S E + + + L+ L+ S + A L N
Sbjct: 349 AIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS-LTIVSNACGTLWNLS 407
Query: 1835 MCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAA 1869
+ ++ A+ + G + +++ L+ S + +A +A
Sbjct: 408 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 442
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 5e-14
Identities = 68/430 (15%), Positives = 136/430 (31%), Gaps = 54/430 (12%)
Query: 1078 MRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESD 1137
+ ++ +L +L + + D + L S S+ +++ SG + LI L+ + D
Sbjct: 31 VEMVYSLLSMLGTHDKDD-----MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKD 85
Query: 1138 TPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDIL-------RPIPD 1190
+ L + + D + G + + LL I
Sbjct: 86 SVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEA 145
Query: 1191 RPGAPPVAVRLLTQIVD--------------GSDTNKLIMAEAGGLDALTKYLSLSPQDS 1236
+ V+ + ++ M E GGL A+ + L + +
Sbjct: 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMY 205
Query: 1237 TEATITELFRILF--------------SNPDLIRYEASLSSLNQLIAVLHLGSRGARLSA 1282
+ +N + + L+A L S +
Sbjct: 206 GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG--CMRALVAQLKSESEDLQQVI 263
Query: 1283 ARALHQL--FDAENIKDSDLAGQAVPPLVDML-SAASECELEVALVALVKLTSGNTSKAC 1339
A L L N K + +V L++ E L+ L AL L++ T
Sbjct: 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323
Query: 1340 LLTDIDGNLLESLYKILSSNS---SLELKRNAA----ELCFIMFGNAKIIANPIASECIQ 1392
+ +DG L L L+ S +L + + + ++ N + C+Q
Sbjct: 324 DICAVDG-ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQ 382
Query: 1393 PLISLMQSDLSIVVESAVCAFERL-LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATV 1451
L+ ++S +V +A L + + E + V +L L+ + + +
Sbjct: 383 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 442
Query: 1452 CALIKLGKDR 1461
AL L +R
Sbjct: 443 AALRNLMANR 452
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 1e-10
Identities = 71/439 (16%), Positives = 145/439 (33%), Gaps = 64/439 (14%)
Query: 1209 SDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLI 1268
S + + M ++G L L + L + +DS + R AS + N +
Sbjct: 59 SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNS-------RGSKEARARASAALHNIIH 111
Query: 1269 AVLHLGSRGARLSAARALHQLFDAENI--KDSDLAGQAVPPLVDMLSAASECELEVALVA 1326
+ + L Q+ + + + + + A E ++ A+
Sbjct: 112 SQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCV 171
Query: 1327 LVKLTSGNTSKACLLTDIDG-----NLLESLY---KILSSNSSLELKRNAAE-LCFIMFG 1377
L+KL+ + + ++ G LL+ + + + S+ L+R A L + FG
Sbjct: 172 LMKLSFDEEHRH-AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFG 230
Query: 1378 NAKIIANPIASE-CIQPLISLMQSDLSIVVESAVCAFERL---LDDEQQVELVEGYDVVD 1433
+ A + + C++ L++ ++S+ + + L D + L E V
Sbjct: 231 DVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 290
Query: 1434 LLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKA-GIIDNCLDLLPVAPSALCSTI 1492
L+ + +++ + AL L T K + G + + L I
Sbjct: 291 LMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI 350
Query: 1493 AE-LFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVT 1551
E IL N S++ +++ + Q L
Sbjct: 351 IESGGGILRNVSSLIATNEDHR-----------------------QILRE---------- 377
Query: 1552 LKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAGI 1610
+ ++ LL L+S S I L +L A+ Q+ + AV L L
Sbjct: 378 -----NNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432
Query: 1611 GILNLQQTAVKALEKISTS 1629
+ + AL + +
Sbjct: 433 KHKMIAMGSAAALRNLMAN 451
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 1e-08
Identities = 54/308 (17%), Positives = 97/308 (31%), Gaps = 61/308 (19%)
Query: 1718 MTQAGVIDALLDLLRSH------QCEETSGRLLE----ALFN----NGRIRQMKVSKY-A 1762
M + G + A+ +LL+ + S L AL N + + S
Sbjct: 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244
Query: 1763 IAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLA--RASASVSACRALISLLEDQSTD 1820
+ L L ++ SE + + A L +LS + + V + +AL+ + +
Sbjct: 245 MRALVAQL---KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 301
Query: 1821 EMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHT 1880
+ AL N N+ + G L A L L
Sbjct: 302 STLKSVLSALWNLSAHCTENKADICAVDGAL-----------------AFLVGTLTYRS- 343
Query: 1881 LQEYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVG 1940
+ + +I S L R + S NE+ + L C+ L+
Sbjct: 344 --QTNTLAIIESGGGIL-RNVSSLIATNEDHRQIL--------------RENNCLQTLLQ 386
Query: 1941 ALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHER 2000
LKS S + TL L + +A+ A+ +L+ L+ +
Sbjct: 387 HLKSHSLTIVSNACGTLWNLSAR------NPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 440
Query: 2001 ADSLLHCL 2008
+ + L L
Sbjct: 441 SAAALRNL 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 1e-08
Identities = 50/270 (18%), Positives = 95/270 (35%), Gaps = 31/270 (11%)
Query: 1178 IPLLVDILRPIPDRPGAPPV---------AVRLLTQIVDGSDTNK-LIMAEAGGLDALTK 1227
+ + ++L+ + G A LT + G NK + + G + AL
Sbjct: 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVA 250
Query: 1228 YLSLSPQDSTEATITELFRILFSNPD----LIRYEASLSSLNQLIAVLHLGSRGARLSAA 1283
L +D + + L + + +R S+ +L + L + S
Sbjct: 251 QLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC--ALEVKKESTLKSVL 308
Query: 1284 RALHQL--FDAENIKDSDLAGQAVPPLVDMLSAASECE----LEVALVALVKLTS-GNTS 1336
AL L EN D A+ LV L+ S+ +E L ++S T+
Sbjct: 309 SALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN 368
Query: 1337 KACLLTDIDGNLLESLYKILSSNSSLELKRNAA----ELCFIMFGNAKIIANPIASECIQ 1392
+ + N L++L + L S SL + NA L + + + + A +
Sbjct: 369 EDHRQILRENNCLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWDMGA---VS 424
Query: 1393 PLISLMQSDLSIVVESAVCAFERLLDDEQQ 1422
L +L+ S ++ + A L+ +
Sbjct: 425 MLKNLIHSKHKMIAMGSAAALRNLMANRPA 454
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 2e-08
Identities = 48/314 (15%), Positives = 98/314 (31%), Gaps = 45/314 (14%)
Query: 996 PDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGI 1055
P I L L SF + + E G L+A+++ L D I
Sbjct: 160 PVEHQICPAVCVLMKL----SFDEEHRHAMNELGGLQAIAE-LLQVDCEMYGLTNDHYSI 214
Query: 1056 WI-----SALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSG 1110
+ AL AN + + AL L+S+ + A + +L
Sbjct: 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 274
Query: 1111 SKGIILAIANSGAVAGLITLIGHIESDTP---------NLVALSEEFFLVRYPDEVVLEK 1161
+ G+V L+ ++ ++ NL A E
Sbjct: 275 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE----------NKAD 324
Query: 1162 LFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPV------AVRLLTQIVDGSDTNKLI 1215
+ ++ + LV L + + +R ++ ++ ++ ++ I
Sbjct: 325 ICAVDGA---------LAFLVGTLTY-RSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374
Query: 1216 MAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGS 1275
+ E L L ++L L+ + NP + +++ L ++H
Sbjct: 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH 434
Query: 1276 RGARLSAARALHQL 1289
+ + +A AL L
Sbjct: 435 KMIAMGSAAALRNL 448
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 1e-07
Identities = 44/276 (15%), Positives = 90/276 (32%), Gaps = 30/276 (10%)
Query: 1081 IPALALLLRSDEVIDRFFAAQAMASLVCSGSKGII-LAIANSGAVAGLITLIGHIESDTP 1139
+ A+A LL+ D + +L + L + A L ++ G +
Sbjct: 191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM----R 246
Query: 1140 NLVALSEEFFLVRYPDEVVLEK----LFEI-----EDVRVGSTARKSIPLLVDILRPIPD 1190
LVA ++ E + + L + + + S+ L++ +
Sbjct: 247 ALVAQ------LKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK 300
Query: 1191 RPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTE-------ATITE 1243
V L ++ I A G L L L+ Q +T +
Sbjct: 301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360
Query: 1244 LFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLF--DAENIKDSDLA 1301
+ ++ +N D + + L L+ L S +A L L + ++ +
Sbjct: 361 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 420
Query: 1302 GQAVPPLVDMLSAASECELEVALVALVKLTSGNTSK 1337
G AV L +++ + + + AL L + +K
Sbjct: 421 G-AVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 455
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 90.9 bits (225), Expect = 1e-19
Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 8/216 (3%)
Query: 87 PLFISILRSGTPLAKVNVAATLSVLCKDEDL-RLKVLLGGCIPPLLSLLKSESTDTRKAA 145
P ++ + L+ LC++ D L G + L++ + R A
Sbjct: 43 PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 102
Query: 146 AEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205
A+ + S + + + G + L L+ + V+ A+ L ++
Sbjct: 103 AQLIGTCS----QNVAAIQEQVLGLGALRKLLRLLD--RDACDTVRVKALFAISCLVREQ 156
Query: 206 DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQ 265
+ L G +++ + + +A LL L++ + T+ G V+ LV
Sbjct: 157 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 216
Query: 266 LVGQNNDISVRASAADALEALSSKSIKAKKAVVAAD 301
LV + AL +L + + + +
Sbjct: 217 LV-RTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 2e-14
Identities = 40/239 (16%), Positives = 83/239 (34%), Gaps = 40/239 (16%)
Query: 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLV-QLLEAGSQ 530
+ + +Q +E A++L+A L E +D + G+ LV + LEAG+
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAA 96
Query: 531 KAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKG-QDASAMALTKLIRAA 589
R AA ++ + I+ V GA+ L LL + + A++ L+R
Sbjct: 97 GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR-- 154
Query: 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS 649
+ + ++ G L++ +
Sbjct: 155 --------------EQEAGLLQFLR---------------------LDGFSVLMRAMQQQ 179
Query: 650 NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708
++ + +A +L +L + G+L + +V + L+ + AL +L
Sbjct: 180 VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 1e-13
Identities = 33/207 (15%), Positives = 72/207 (34%), Gaps = 2/207 (0%)
Query: 389 RQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIG-LITMATAD 447
Q + ++ +E LE +A L N+ + +L+G + A
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97
Query: 448 VREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVD 506
+R + + I E + ++ L+ LL + + A+ I+ L + +
Sbjct: 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157
Query: 507 DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566
G L++ ++ QK + +A +L L + + + S G V + L
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 217
Query: 567 LKSGGPKGQDASAMALTKLIRAADSAT 593
+++ + AL L+
Sbjct: 218 VRTEHSPFHEHVLGALCSLVTDFPQGV 244
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 8e-13
Identities = 28/175 (16%), Positives = 61/175 (34%), Gaps = 3/175 (1%)
Query: 393 DILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHAEAKKVLIGLITMATAD-VRE 450
+LV ++ R + + + + + V A + L+ L+ D VR
Sbjct: 84 HLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRV 143
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
+ +++ L R + + +G +L+ + ++ + + L+ L + K
Sbjct: 144 KALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG 203
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED-IRACVESAGAVPAFL 564
+ + G + LV L+ E L L +R C E + L
Sbjct: 204 TLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELL 258
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 6e-11
Identities = 52/278 (18%), Positives = 96/278 (34%), Gaps = 17/278 (6%)
Query: 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEA 215
G + MK + P + D + L +LC + D +
Sbjct: 22 GQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD-NAADFCQL 80
Query: 216 GGVDIIVG-LLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDIS 274
G+ ++VG L + A + AA L+ V+ GA++ L++L+ ++ +
Sbjct: 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDT 140
Query: 275 VRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRAL 334
VR A A+ L + + DG VL+ A+ ++ L+ + L
Sbjct: 141 VRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK---------LKVKSAFLL 191
Query: 335 ANIYGGMPALVVYLGELSQSPRLAA----PVADIIGALAYAL--MVFEQKSGVDDEPFDA 388
N+ G P L + +L A + + AL +V + GV +
Sbjct: 192 QNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251
Query: 389 RQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQ 426
+E++L + + LE L F S
Sbjct: 252 LGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSP 289
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 4e-08
Identities = 42/285 (14%), Positives = 92/285 (32%), Gaps = 46/285 (16%)
Query: 487 SEQHQEYAVQLIAILTEQVDDSKW-----AITAAGGIPPLVQLLEAGSQKAREVAAHVLW 541
H V + + Q + + + + P + +A Q+ RE A +L
Sbjct: 6 HHHHSSGLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLA 65
Query: 542 ILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALL 601
LC + ++ + +G L++G + +A + +
Sbjct: 66 DLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQ-------------- 111
Query: 602 LGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASV 660
+ + + V+ LR L+++L+ + + A
Sbjct: 112 --NVAAIQEQVLG---------------------LGALRKLLRLLDRDACDTVRVKALFA 148
Query: 661 LADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSY 720
++ L ++ + + MR + Q + +SA L L +K +
Sbjct: 149 ISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLL---VGHPEHKGTL 205
Query: 721 IAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLED 765
+ G V+ L+ L +T E + AL +L++D E
Sbjct: 206 CSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP 250
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 3/197 (1%)
Query: 1178 IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDST 1237
+ LLV G A +L+ + + G L L + L D+
Sbjct: 83 MHLLVGRYLEAGA-AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTV 141
Query: 1238 -EATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIK 1296
+ + ++ + L + L+ + + ++ +A L L
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201
Query: 1297 DSDLAGQ-AVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKI 1355
L V LV ++ E L AL L + + + L E L
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR 261
Query: 1356 LSSNSSLELKRNAAELC 1372
E + E C
Sbjct: 262 CQLLQQHEEYQEELEFC 278
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 1e-06
Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 10/166 (6%)
Query: 53 SSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPL-AKVNVAATLSVL 111
+ R I T ++ + + A+ + +L +V +S L
Sbjct: 94 GAAGLRWRAAQLIGTCSQNVAAIQEQV-LGLGALRKLLRLLDRDACDTVRVKALFAISCL 152
Query: 112 CKD-EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE 170
++ E L+ L L+ ++ + + +A L + G +
Sbjct: 153 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH----KGTLCSM 208
Query: 171 GVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAG 216
G+V L + + + V GAL +L D R E
Sbjct: 209 GMVQQLVALV---RTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 251
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 36/226 (15%), Positives = 77/226 (34%), Gaps = 16/226 (7%)
Query: 1807 CRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGI-LVVQELLLSTNAEVA 1865
E + + + A+ L + + N + G+ L+V L + A +
Sbjct: 41 MPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLR 99
Query: 1866 GQAA-LLTKFLFSNHTLQEYV-SNELIRSLTAALERELWSTATINEEVLRTLHVIFMNFP 1923
+AA L+ + +QE V +R L L+R+ + T+ + L + +
Sbjct: 100 WRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD--ACDTVRVKALFAISCLVREQE 157
Query: 1924 KLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAI 1983
L+ A++ + + + + LL+N + + +
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQKLK---VKSAFLLQNLLVG---HPEHKGTLCSMGMV 211
Query: 1984 PILQMLMKTCPPSFHERA----DSLLHCLPGCLTVTIKRGNNLKQT 2025
L L++T FHE SL+ P + + L++
Sbjct: 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEEL 257
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 12/184 (6%)
Query: 1743 LLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQH-EGLARAS 1801
L E + N Q+ + L L + + + AA +G SQ+ +
Sbjct: 67 LCENMDNAADFCQLS----GMHLLVGRYL--EAGAAGLRWRAAQLIGTCSQNVAAIQEQV 120
Query: 1802 ASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTN 1861
+ A R L+ LL+ + D +++ A+ A+ V G V+ +
Sbjct: 121 LGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV 180
Query: 1862 AEVAGQAA-LLTKFLFSNHTLQEYVSNE-LIRSLTAALERELWSTATINEEVLRTLHVIF 1919
++ ++A LL L + + + + +++ L A + E + +E VL L +
Sbjct: 181 QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE---HSPFHEHVLGALCSLV 237
Query: 1920 MNFP 1923
+FP
Sbjct: 238 TDFP 241
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 45/243 (18%), Positives = 80/243 (32%), Gaps = 9/243 (3%)
Query: 1272 HLGSRGARLSAARALHQLFDAENIKDSD--LAGQAVPPLVDMLSAASECELEVALVALVK 1329
H S G + Q + E +K L+ P + AA + E E AL L
Sbjct: 7 HHHSSGLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLAD 66
Query: 1330 LTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAE-LCFIMFGNAKIIANPIAS 1388
L N A + G + L + L+ AA+ + A I +
Sbjct: 67 LCE-NMDNAADFCQLSG--MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL 123
Query: 1389 ECIQPLISLMQSDLSIVV-ESAVCAFERLL-DDEQQVELVEGYDVVDLLVRLVSGTNHRL 1446
++ L+ L+ D V A+ A L+ + E + D +L+R + +L
Sbjct: 124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183
Query: 1447 VEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALCSTIAELFRILTNSSAI 1505
+ L L K + G++ + L+ + L ++T+
Sbjct: 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243
Query: 1506 ARS 1508
R
Sbjct: 244 VRE 246
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 4e-04
Identities = 26/191 (13%), Positives = 58/191 (30%), Gaps = 13/191 (6%)
Query: 1555 TPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLV-QLAGIGIL 1613
P L ELL L D + + LV + G
Sbjct: 39 QPMPPTAGEAEQAADQQEREGAL--ELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAA 96
Query: 1614 NLQQTAVKALEKISTSWPK---AVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVL 1670
L+ A + + S + V G + ++ +++ +D ++ A +S ++
Sbjct: 97 GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRD---ACDTVRVKALFAISCLV 153
Query: 1671 RFNTEYYFKVP----VVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDA 1726
R + VL++ + ++ + L + G++
Sbjct: 154 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213
Query: 1727 LLDLLRSHQCE 1737
L+ L+R+
Sbjct: 214 LVALVRTEHSP 224
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 1e-13
Identities = 115/679 (16%), Positives = 205/679 (30%), Gaps = 191/679 (28%)
Query: 937 HKKQSMDALDLS----GYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAF--QEA 990
H MD + Y K ++ D N C D++ M ++ +E
Sbjct: 2 HHHHHMD-FETGEHQYQY-KDILSVFEDAFVDNFDCK--DVQ------DMPKSILSKEEI 51
Query: 991 DD-FDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEA--GALEA----LSDKLASYTS 1043
D D + L L V + L L + +
Sbjct: 52 DHIIMSKDAVS------GTLRLFWT--LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 1044 NPQAEFEDTEGIWISALFLAILFQDANIVLSPATM-RIIPALAL---L--LRSDEVIDRF 1097
P ++I L+ D N V + + R+ P L L L LR + +
Sbjct: 104 QPSMMTR----MYIEQR--DRLYND-NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 1098 ----FAAQAMASLVCSGSK-------GII-LAIANSGAVAGLI----TLIGHIESDTPNL 1141
+A VC K I L + N + ++ L+ I+ PN
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID---PNW 213
Query: 1142 VALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVR- 1200
+ S+ ++ + +L + + LL +L + + +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----LL--VLLNVQNAKAWNAFNLSC 266
Query: 1201 --LLT----QIVD--GSDTNKLI--------MAEAGGLDALTKYLSLSPQD-STEAT--- 1240
LLT Q+ D + T I + L KYL PQD E
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 1241 ------ITELFRILFSNPDLIRYEASLSSLNQLI--AVLHLGSRGARLSAARALHQLFDA 1292
I E R + D ++ + L +I ++ L R ++FD
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYR--------KMFDR 377
Query: 1293 ENI--KDSDLAGQAVPPLV-DML-SAASECELEVALVALVKLTSGNTSKACLLTDIDGNL 1348
++ + +P ++ ++ + ++ V + L K + + +
Sbjct: 378 LSVFPPSAH-----IPTILLSLIWFDVIKSDVMVVVNKLHK-------YSLVEKQPKEST 425
Query: 1349 LESLYKILSSNSSLELK---RNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIV 1405
+ S+ I LELK N L + I+ + + DL
Sbjct: 426 I-SIPSIY-----LELKVKLENEYAL------HRSIV------DHYNIPKTFDSDDLIPP 467
Query: 1406 VESA-VCAFERL---LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDR 1461
+ + L + + E + + +V L + R +E K+ D
Sbjct: 468 YLDQYFYSH--IGHHLKNIEHPERMTLFRMVFL--------DFRFLEQ------KIRHDS 511
Query: 1462 TPRK-----------LQMVKAGIIDNC----------LDLLP-VAPSALCSTIAELFRI- 1498
T L+ K I DN LD LP + + +CS +L RI
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 1499 -LTNSSAIARSSDAAKIVE 1516
+ AI +A K V+
Sbjct: 572 LMAEDEAIF--EEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 1e-12
Identities = 79/629 (12%), Positives = 185/629 (29%), Gaps = 203/629 (32%)
Query: 1344 IDGNLLESLYKILSSNSSLELKRNAAELCFI---MFGNAKIIANPIASECIQPLISLMQS 1400
+ + + ++ + L K+ F+ + N K + +PI +E QP
Sbjct: 56 MSKDAVSGTLRLFWT---LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP------- 105
Query: 1401 DLSIVVESAVCAFERLLDDEQ-----QVELVEGYDVV-DLLVRLVSGTN---H------- 1444
S++ + +RL +D Q V ++ Y + L+ L N
Sbjct: 106 --SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 1445 -RLVEATVCAL-------------IKLGKDRTPRK-LQMVK-----------------AG 1472
+ VC + L +P L+M++ +
Sbjct: 164 TWVA-LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 1473 IIDNCLDL---------LPVAPSALC-------STIAELF----RIL--TNSSAIARSSD 1510
I + + L + F +IL T +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 1511 AAKIVEPLFMVLLQPDFSLWGQHSALQALVNILE-KPQSLVTLKLTPSQV--IEPLLSFL 1567
AA + + + L+ L+ +PQ L P +V P
Sbjct: 283 AATTTH-ISLDHHSMTLT---PDEVKSLLLKYLDCRPQDL------PREVLTTNPR---- 328
Query: 1568 ESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKIS 1627
+ + + L ++++ K + + ++++ LE
Sbjct: 329 -----RLSIIAESIRDGLATWDNWKHVNCDK-------------LTTIIESSLNVLE--- 367
Query: 1628 TSWPKAVADAGGIFEIAKVIIQDD-PQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLV 1686
P A+ +F+ + P +LS ++ F+ +VV+
Sbjct: 368 ---P---AEYRKMFD-RLSVFPPSAHIPTI--------LLS-LIWFDVIKS--DVMVVVN 409
Query: 1687 KMLHSTL------ESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETS 1740
K+ +L ESTI+ + ++ + + + + + +++D + ++
Sbjct: 410 KLHKYSLVEKQPKESTIS--IPSIYLELKVKLENEYALHR-----SIVDHYNIPKTFDSD 462
Query: 1741 GRLLEALFNNGRIRQMKVSKYAIAPLSQYL---LDPQTRSESGKLLAALALGDLS----- 1792
+ L Y ++ L E L + L D
Sbjct: 463 DLIPPYLDQ-----------Y----FYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQK 506
Query: 1793 -QHEGLARASASVSACRALISLLED-----------QSTDEMKMVAICALQNFVMCSRTN 1840
+H+ A +A ++++ L+ E + A+ +F+ N
Sbjct: 507 IRHDSTAW-----NASGSILNTLQQLKFYKPYICDNDPKYERL---VNAILDFLPKIEEN 558
Query: 1841 RRAVAEAGGILVVQELLLSTNAEVAGQAA 1869
+ + +++ L++ + + +A
Sbjct: 559 ---LICSKYTDLLRIALMAEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 1e-11
Identities = 95/633 (15%), Positives = 178/633 (28%), Gaps = 181/633 (28%)
Query: 1477 CLDLLPVAPSAL-----CSTIAELFR-ILTNSSA--IARSSDAAKIVEPLFMVLLQPDFS 1528
D+L V A C + ++ + IL+ I S DA LF LL
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK--- 74
Query: 1529 LWGQHSALQALVNILEKP------QSLVTLKLTPSQVIEPLLSFLESPSHAIQQLG---- 1578
Q +Q V + + + T + PS + + + + Q
Sbjct: 75 ---QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 1579 --TELLTHLLAQEHFQQDITTKNAVVPLVQLAGIG------------------------- 1611
+ L ++ + KN ++ + G G
Sbjct: 132 SRLQPYLKL--RQALLELRPAKNVLI--DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 1612 ----------ILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQD---DPQPPHSL 1658
+L + Q + ++ TS ++ + ++ + L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 1659 WESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNAL------LIHERTDA 1712
LVL NV F + +L+ +T +T L+A L H
Sbjct: 248 -----LVLLNVQNAKAWNAFNLSCKILL----TTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 1713 SSAEQMTQ-AGVIDALLDLLRSHQCEETSGRLLE---ALFNNGRIRQMKVSKYAIAPLSQ 1768
+ E + +D L + T+ R L +G
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIRDGLAT----WDN----WKH 349
Query: 1769 YLLDPQTRS-ESGKLLAALALGDLSQH-EGLA--RASASVSACRALISLL--EDQSTDEM 1822
D T ES L L + + + L+ SA + L+SL+ + +D M
Sbjct: 350 VNCDKLTTIIESS--LNVLEPAEYRKMFDRLSVFPPSAHIPT--ILLSLIWFDVIKSDVM 405
Query: 1823 KMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFL------- 1875
+V L + + + + + + + L ++ + AL +
Sbjct: 406 VVV--NKLHKYSLVEKQPKE------STISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 1876 -FSNHTLQ-----EYVSNELIRSLTAALERELWSTATINEEVLRTLHVIFMNF----PKL 1925
F + L +Y + + L E + R +F++F K+
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM-------TLFRM---VFLDFRFLEQKI 507
Query: 1926 -HTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWSTMPIDVAKSQAMIAAEAIP 1984
H S A A GS+L+TL + + I
Sbjct: 508 RHDSTAWN----------------ASGSILNTL-----------QQLKFYKPYIC----- 535
Query: 1985 ILQMLMKTCPPSFHERADSLLHCLPGCLTVTIK 2017
P + +++L LP I
Sbjct: 536 ------DNDP-KYERLVNAILDFLPKIEENLIC 561
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 8e-11
Identities = 110/723 (15%), Positives = 204/723 (28%), Gaps = 237/723 (32%)
Query: 611 HVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEEN-QEYAASVLAD----LF 665
V + +L+ + ++ A + G L L S EE Q++ VL L
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVS-GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 666 SMRQDICG--SLATDEIVNPCMRLLTSNTQMVATQSAR---------ALGALSRPTKT-- 712
S + S+ T + RL N +R AL L RP K
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-RPAKNVL 154
Query: 713 --------KTTNKMSYIAEGDVKPL-------IKLAKTSSIDAAETAVAALANLL----- 752
KT + V+ + L +S ET + L LL
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS---PETVLEMLQKLLYQIDP 211
Query: 753 -----SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL--------HQLLKHFPVG 799
SD ++ + + + L R+L K L + F
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKS------KPYENCLLVLLNVQNAKAWNAF--- 262
Query: 800 DVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEV 859
N C+ ++ T V D L +A
Sbjct: 263 -----NLSCKILLTT----------RFKQVTDFL--------------------SAATTT 287
Query: 860 PSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSS 919
S++ L D+ +L + L
Sbjct: 288 HISLDHHSMTLTP------DEVKSLLLK-------YLD-----------------CRPQD 317
Query: 920 L--EVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLD-IEVR 976
L EV + + E + + D + L +++ SS + L+ E R
Sbjct: 318 LPREV-LTTNPRRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIE--SSLNVLEPAEYR 372
Query: 977 TPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSD 1036
+ + + F P +L +W +V + + +
Sbjct: 373 --KMFDRLSVFPP----SAHIPTILL---SLIW-----------FDVIKSDV---MVVVN 409
Query: 1037 KLASYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATM--RIIPALALLLRSD--- 1091
KL Y+ + E T I I +++L + + N + I+ + D
Sbjct: 410 KLHKYSLVEKQPKEST--ISIPSIYLELKVKLENE----YALHRSIVDHYNIPKTFDSDD 463
Query: 1092 ---EVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIG-HIESDTPNLVALSEE 1147
+D++F + IG H+++ + E
Sbjct: 464 LIPPYLDQYFY-----------------------------SHIGHHLKN-----IEHPER 489
Query: 1148 FFLVR--YPDEVVLE-KLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRL-LT 1203
L R + D LE K+ R STA + +++ L+ ++
Sbjct: 490 MTLFRMVFLDFRFLEQKI------RHDSTAWNASGSILNTLQ---Q--------LKFYKP 532
Query: 1204 QIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSS 1263
I D + + ++A+ +L ++ + T+L RI D +E +
Sbjct: 533 YICDNDPKYERL------VNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Query: 1264 LNQ 1266
+ +
Sbjct: 587 VQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 1e-08
Identities = 97/630 (15%), Positives = 182/630 (28%), Gaps = 186/630 (29%)
Query: 372 LMVFEQKSGVDDEPFDARQIEDILVMLLKPH--DNKLVQERVLEAMASLYGNIFLSQWVS 429
L VFE VD+ FD + ++D+ +L D+ ++ + + L+ LS+
Sbjct: 22 LSVFEDAF-VDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-TLLSK--- 74
Query: 430 HAEAKKVLIGLITMATADVREY--LILSLTKLCRREVGIWEA-IGKREGIQLLISLLGLS 486
E + + Y L+ + R+ + I +R+ +
Sbjct: 75 QEEMVQKFVE-----EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-------ND 122
Query: 487 SEQHQEYAV---QLIAILTE---QVDDSKWAITAAGGIPPLVQLLEAGSQK---AREVAA 537
++ +Y V Q L + ++ +K + G GS K A +V
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKN-VLIDGV---------LGSGKTWVALDVCL 172
Query: 538 ----------HVLWILCCHSEDIRACVESAGAVPAFLWLL--KSGGPKGQDASAMALTKL 585
+ W+ +++ C S V L L + + + KL
Sbjct: 173 SYKVQCKMDFKIFWL------NLKNC-NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 586 IRAADSATINQLL-------ALLLGDSPSSKAHV------IKVLGHVLTMALQEDLVQKG 632
+ A + +LL LL+ + + K+L + T + +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL--LTTR--FKQVTDFL 281
Query: 633 SAANKGLRSLVQVLNS-SNEENQEYAASVL-ADLFSMRQDICGSLATDEIVNPCMRLLTS 690
SAA SL + + +E + L + +++ NP S
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-------TNP---RRLS 331
Query: 691 NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVA-- 746
++A L+ K N KL SS++ E A
Sbjct: 332 ---IIA---ESIRDGLATWDNWKHVNCD------------KLTTIIESSLNVLEPAEYRK 373
Query: 747 ---ALANLLSDPDIAAEVL-----------LEDVV------SALTRVLAEGTSE------ 780
L+ I +L + VV S + + E T
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 781 ---GKKNASRALHQ-LLKHFPVGDVLKGNAQCRFVVLTLVDS---------LNAMDMNGT 827
K ALH+ ++ H+ + + ++ +D L ++
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDD----LIPPYLDQYFYSHIGHHLKNIEH--P 487
Query: 828 DVADALEVVAL-LARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQD-----KA 881
+ +V L +Q + W A SI LQ
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNA----SGSILNT----------LQQLKFYKPY 533
Query: 882 I----EILSRLCGDQPAVLGDFLMARSSSI 907
I RL + DFL ++
Sbjct: 534 ICDNDPKYERLVNA----ILDFLPKIEENL 559
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 3e-12
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Query: 476 IQLLISLLGLSS--EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAR 533
++ +S+L A I Q +++ + GI L+QLL+ ++ +
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 534 EVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKG-QDASAMALTKL 585
L L D + V VP L +LK + L L
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNL 122
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 6e-12
Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 1/148 (0%)
Query: 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVD 506
+ C ++ + + + GI L+ LL + +E Q + L + +
Sbjct: 25 SRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDN 84
Query: 507 DSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW 565
D+K + G+P L+Q+L+ + ++ +LW L + + + A
Sbjct: 85 DNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENI 144
Query: 566 LLKSGGPKGQDASAMALTKLIRAADSAT 593
++ G D + T
Sbjct: 145 IIPFSGWPEGDYPKANGLLDFDIFYNVT 172
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 65.7 bits (160), Expect = 1e-11
Identities = 29/159 (18%), Positives = 55/159 (34%), Gaps = 9/159 (5%)
Query: 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245
+++ C K + + G+ ++ LL N Q L L+
Sbjct: 22 MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81
Query: 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPV 305
D+ V + V L+Q++ Q D+ + L LSS K ++ + +
Sbjct: 82 EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND--KLKNLMITEALLT 139
Query: 306 LIGAIVAPSKECMQGQRGQA-------LQGHATRALANI 337
L I+ P +G +A + + T L N+
Sbjct: 140 LTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNM 178
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 64.2 bits (156), Expect = 4e-11
Identities = 41/277 (14%), Positives = 78/277 (28%), Gaps = 74/277 (26%)
Query: 80 GSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKS 136
+ +S+L + P A + C + R +V I LL LLK
Sbjct: 4 ADMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV 63
Query: 137 ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG 196
++ D ++A AL + + NK
Sbjct: 64 QNEDVQRAVCGALRNLVFE-------------------------DNDNKL---------- 88
Query: 197 ALRNLCGDKDGYWRATLEAGGVDIIVGLL-SSDNAAAQSNAASLLARLMLAFGDSIPTVI 255
E GV ++ +L + + + LL L+ D + ++
Sbjct: 89 --------------EVAELNGVPRLLQVLKQTRDLETKKQITGLL--WNLSSNDKLKNLM 132
Query: 256 DSGAVKALVQLV---------------GQNNDISVRASAADALEALSSKSIKAKKAVVAA 300
+ A+ L + + D + + L +SS +KA+
Sbjct: 133 ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRC 192
Query: 301 DG-VPVLIGAIVAPSKECMQGQRGQALQGHATRALAN 336
DG + L+ + + Q + L N
Sbjct: 193 DGLIDSLVHYVRGTIAD---YQPDDKATENCVCILHN 226
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 28/201 (13%)
Query: 1279 RLSAARALHQL-FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSK 1337
+AA + F + + + L+ +L +E AL L +
Sbjct: 27 ISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86
Query: 1338 ACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISL 1397
+ +++G + L ++L LE K+ L + + N K+ + +E + L
Sbjct: 87 KLEVAELNG--VPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTEN 143
Query: 1398 MQSDLSIVVESAVCAFERLLD------------------DEQQVELVEGYDVVDLLVRLV 1439
+ S E LLD + + + ++D LV V
Sbjct: 144 IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYV 203
Query: 1440 SGT------NHRLVEATVCAL 1454
GT + + E VC L
Sbjct: 204 RGTIADYQPDDKATENCVCIL 224
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 23/155 (14%), Positives = 55/155 (35%), Gaps = 6/155 (3%)
Query: 639 LRSLVQVLNSSNEEN--QEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696
L V +L + + AA+ + + + + + ++LL + V
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIK-LAKTSSIDAAETAVAALANLLSDP 755
AL L NK+ V L++ L +T ++ + L NL S+
Sbjct: 70 RAVCGALRNLVFED---NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126
Query: 756 DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALH 790
+ ++ E +++ ++ + + + +A
Sbjct: 127 KLKNLMITEALLTLTENIIIPFSGWPEGDYPKANG 161
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 3/113 (2%)
Query: 685 MRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETA 744
+ +L ++ + + SA A + K+ + + L++L K + D
Sbjct: 14 VSMLEADHMLPSRISA-AATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAV 72
Query: 745 VAALANL-LSDPDIAAEVLLEDVVSALTRVLAEGTSEG-KKNASRALHQLLKH 795
AL NL D D EV + V L +VL + KK + L L +
Sbjct: 73 CGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 4e-11
Identities = 46/345 (13%), Positives = 112/345 (32%), Gaps = 24/345 (6%)
Query: 503 EQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPA 562
+ + ++ I I L + + S ++ +++ + I + GAV
Sbjct: 444 DILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ-QGAVKI 502
Query: 563 FLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622
L L + G+ + L R N L + ++ + ++L +
Sbjct: 503 ILEYLANKQDIGEPIRILGCRALTRML--IFTNPGLIFKKYSALNAIPFLFELLPRSTPV 560
Query: 623 ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE-IV 681
+ +L+ + N ++ E S +++C + + +
Sbjct: 561 DDNPLHNDEQIKLTDNYEALLALTNLASSET------------SDGEEVCKHIVSTKVYW 608
Query: 682 NPCMRLLTSNTQMV---ATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI 738
+ L+ + + + + K N + + + L+KL + S +
Sbjct: 609 STIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDV 668
Query: 739 DAAETAVAALANLLSDPDIAAEVLLE--DVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796
++ A AN+ + + A+ LL +++ +V A+ + + R L F
Sbjct: 669 ESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQ-RLLMLFFGLF 727
Query: 797 PVGDVLKGNAQCRFV--VLTLVDSLNAMDMNGTDVADALEVVALL 839
V N + L D+LN G + + ++
Sbjct: 728 EVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIPVI 772
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 3e-09
Identities = 35/268 (13%), Positives = 80/268 (29%), Gaps = 29/268 (10%)
Query: 82 HAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDT 141
+ + + + +P K V + + + ++ ++ G + +L L ++
Sbjct: 455 RTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIG 514
Query: 142 RKAAAEALYEVSSGGLSDD-HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTG---- 196
++ + + + K + +P L++ L D+
Sbjct: 515 EPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT 574
Query: 197 -------ALRNLCGDKDGYWRATL-----EAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244
AL NL + I L+ +N Q + L++ +M
Sbjct: 575 DNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMM 634
Query: 245 LA--------FGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKA 296
F P + LV+L+ ++ S RA AA +++ K
Sbjct: 635 SHPLTIAAKFFNLENPQSLR--NFNILVKLLQLSDVESQRAVAA-IFANIATTIPLIAKE 691
Query: 297 VVAAD-GVPVLIGAIVAPSKECMQGQRG 323
++ + I + QR
Sbjct: 692 LLTKKELIENAIQVFADQIDDIELRQRL 719
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 8e-06
Identities = 58/443 (13%), Positives = 140/443 (31%), Gaps = 55/443 (12%)
Query: 1273 LGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTS 1332
L ++ +A L + + + +L Q ++ +S ++E+++ AL L+
Sbjct: 305 LNVEDVQIYSALVLVKTWSFTKLTCINLK-QLSEIFINAISRRIVPKVEMSVEALAYLSL 363
Query: 1333 GNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIAN----PIAS 1388
+ K + ++ + E L ++ S ++G I+AN P
Sbjct: 364 KASVKIMIRSN--ESFTEILLTMIKSQKMTH----------CLYGLLVIMANLSTLPEEX 411
Query: 1389 ECIQPLISLMQSDLSIVVESAVCAFERLLDDEQQVE----LVEGYDVVDLLVRLVSGTNH 1444
+A E + + +++ L R + +
Sbjct: 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSP 471
Query: 1445 RLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAE----LFRIL- 1499
+ V + + + + Q+ + G + L+ L L R+L
Sbjct: 472 NCKQQVVRIIYNITRSKNFIP-QLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI 530
Query: 1500 -TNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHS------------ALQALVNILEKP 1546
TN I + A + LF +L + AL AL N+
Sbjct: 531 FTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSE 590
Query: 1547 ----QSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHF-------QQDI 1595
+ + ++ + + + + +Q+ EL++++++ ++
Sbjct: 591 TSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP 650
Query: 1596 TTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWP---KAVADAGGIFEIAKVIIQDDP 1652
+ LV+L + + Q+ I+T+ P K + + E A + D
Sbjct: 651 QSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVF-ADQ 709
Query: 1653 QPPHSLWESAALVLSNVLRFNTE 1675
L + ++ + +
Sbjct: 710 IDDIELRQRLLMLFFGLFEVIPD 732
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 57.8 bits (138), Expect = 4e-08
Identities = 141/1146 (12%), Positives = 325/1146 (28%), Gaps = 105/1146 (9%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186
I LL + S D R A L L D + + VV + L KN +
Sbjct: 8 ISNLLEKMTSSDKDFRFMATNDLM----TELQKDSIKLDDDSERKVVKMILKLLEDKNGE 63
Query: 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246
VQ L L Y T+ VD + + SD + ++ L ++
Sbjct: 64 ---VQNLAVKCLGPLVSKVKEYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGE 116
Query: 247 FGDSIPTVIDSGAVKALV--QLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVP 304
+ + V + +L + +AL+ ++ + +V P
Sbjct: 117 LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HP 174
Query: 305 VLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGEL---SQSPRLAAPV 361
++ ++ R + + ++ L+ +L + S
Sbjct: 175 SILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTY 234
Query: 362 ADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN 421
I A++ + +I ++V D++ ++E ++A S
Sbjct: 235 IQCIAAISRQAGHRIGEY--------LEKIIPLVVKFCNVDDDE-LREYCIQAFESFVRR 285
Query: 422 IFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS 481
+ + + + +T + + +G S
Sbjct: 286 CPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDE-----NAMDADGGDDDDQGSDDEYS 340
Query: 482 LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLW 541
S + + A + + + + P L+ + + + H
Sbjct: 341 DDDDMSWKVRRAAAKCLDAVVSTRHEML-PEFYKTVSPALISRFKEREENVKADVFHAYL 399
Query: 542 ILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALL 601
L + +++ + A+ ++++ + L +
Sbjct: 400 SLLKQTRPVQSWLCDPDAM----------------EQGETPLTMLQSQVPNIVKALHKQM 443
Query: 602 LGDSPSSKAHVIKVLG---HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAA 658
S ++ +L +VL AL + + L SS+ + A
Sbjct: 444 KEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLND-----KSSSSNLKIDAL 498
Query: 659 SVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR----PTKTKT 714
S L + +V P + + + +++ L + + +
Sbjct: 499 SCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSS 558
Query: 715 TNKMSYIAEGDVKPLIKLAKTSS-IDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRV 773
+ YI + + +L + E A++ + ++ + L + +
Sbjct: 559 FDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLER 618
Query: 774 LAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADAL 833
L + +AL + D+ + ++ + + L
Sbjct: 619 LKN--EITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKL-----GTL 671
Query: 834 EVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQP 893
+ +L + Y A + + ++ L ++E + AI L+ L P
Sbjct: 672 SALDILIK-------NYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYP 724
Query: 894 AVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAAL-LICAAKEHKKQSMDALDLSGYLK 952
+ L SI ++ S L+ A L A ++ +DL L
Sbjct: 725 SSLSKIS----GSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLT 780
Query: 953 PLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLL 1012
+Y+ + S S+ V + F + + L
Sbjct: 781 GPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQF----IQDVKNSRSTDSIRL 836
Query: 1013 IISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIWISALFLAILFQDANIV 1072
+ L + +G LE S L +++S E ++ L +
Sbjct: 837 LALLSLGEVGHHIDLSGQLELKSVILEAFSS------PSEEVKSAASYALGSIS------ 884
Query: 1073 LSPATMRIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIG 1132
+P + + S ++ ++ ++ S S + + A L+
Sbjct: 885 -VGNLPEYLPFVLQEITSQPK-RQYLLLHSLKEIISSASVVGLKPYVEN-IWALLLKHCE 941
Query: 1133 HIESDTPNLVALSEEFFLVRYPDEVV--LEKLFEIEDVRVGSTARKSIPLLVDILRPIPD 1190
E T N+VA + P+ ++ L+ S+ ++ + P P
Sbjct: 942 CAEEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISD-HPQPI 1000
Query: 1191 RPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFS 1250
P L + D + + ++ +D + + L+
Sbjct: 1001 DPLLKNCIGDFLKTLEDPDLNVRRVALVT--FNSAAHNKPSLIRDLLDTVLPHLYNETKV 1058
Query: 1251 NPDLIR 1256
+LIR
Sbjct: 1059 RKELIR 1064
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 4e-08
Identities = 96/588 (16%), Positives = 194/588 (32%), Gaps = 75/588 (12%)
Query: 1081 IPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTP- 1139
I L LR+++V R + + ++ I LA+ + L+ + D
Sbjct: 12 IAVLIDELRNEDVQLRLNSIKKLS--------TIALALGVERTRSELLPFLTDTIYDEDE 63
Query: 1140 -------NLVALSEEFFLVRYPDEVV--LEKLFEIEDVRVGSTARKSIPLLVDILRPIPD 1190
L + Y ++ LE L +E+ V A +S+ + P
Sbjct: 64 VLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP--- 120
Query: 1191 RPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFS 1250
V L+ ++ G A G +S + +A + + FR L S
Sbjct: 121 -SDLEAHFVPLVKRLAGGDWFTSRTSA-CGLFSVCYPRVS----SAVKAELRQYFRNLCS 174
Query: 1251 NPDLIRYEASLSSLNQLIAVLHL-----------------GSRGARLSAARALHQLFDAE 1293
+ + A+ S L + VL L RL A A + A+
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI--AQ 232
Query: 1294 NIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLY 1353
+ DL +P L S + +L + +L+ +
Sbjct: 233 LLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE-----ITKTDLVPAFQ 287
Query: 1354 KILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCA- 1412
++ + + ++ + + I P I + SD + V+SA+ +
Sbjct: 288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347
Query: 1413 ---FERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKL-QM 1468
+L + +E ++ L + + + + L + + R+L Q
Sbjct: 348 IMGLSPILGKDNTIE-----HLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS 402
Query: 1469 VKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFS 1528
+ I++ D A+ + L L + + L M L D
Sbjct: 403 LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG-------VEFFDEKLNSLCMAWLV-DHV 454
Query: 1529 LWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ 1588
+ +A L ++EK + + +I +L+ P++ + + L
Sbjct: 455 YAIREAATSNLKKLVEKFGK----EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLS-- 508
Query: 1589 EHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVAD 1636
E QDITTK+ + ++++AG + N++ K+L+KI +
Sbjct: 509 EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ 556
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 5e-05
Identities = 87/558 (15%), Positives = 164/558 (29%), Gaps = 81/558 (14%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186
+PPL SL E T R A E+L +S S + E L +L
Sbjct: 89 LPPLESLATVEETVVRDKAVESLRAISH-EHSPSDL-------EAHFVPLVKRLA--GGD 138
Query: 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246
+ G +A L L S D + AAS L
Sbjct: 139 WFTSRTSACGLFSVCYPRVSSAVKAEL----RQYFRNLCSDDTPMVRRAAASKLGEFAKV 194
Query: 247 FGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVL 306
+ S + L D SVR A +A ++ + + A +P L
Sbjct: 195 LELDN---VKSEIIPMFSNLASDEQD-SVRLLAVEACVNIAQLLPQED---LEALVMPTL 247
Query: 307 IGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPA------LVVYLGELSQSPRLAAP 360
A S ++ + + LV L +
Sbjct: 248 RQAAEDKSWR---------VRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE---- 294
Query: 361 VADIIGALAYALMVFEQKSGVDDEPFDA-RQIEDILVMLLKPHDNKLVQERVLEAMASLY 419
A++ A ++ + F + D QI + L+ + + V A+AS+
Sbjct: 295 -AEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDAN-----QHVKSALASVI 348
Query: 420 GNI--FLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQ 477
+ L + + + + + +VR +I +L + E IG R+ Q
Sbjct: 349 MGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN-------EVIGIRQLSQ 401
Query: 478 LLISLLGLSSEQH----QEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAR 533
L+ + +E + ++ + +L Q+ + + L R
Sbjct: 402 SLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKL---NSLCMAWLVDHVYAIR 458
Query: 534 EVAAHVLWILCCH--SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591
E A L L E A + +P L + + + + L
Sbjct: 459 EAATSNLKKLVEKFGKEWAHATI-----IPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513
Query: 592 ATINQ-----LLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL 646
+ +L + + + +V K L + + L ++ L ++
Sbjct: 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL------QSEVKPILEKLT 567
Query: 647 NSSNEENQEYAASVLADL 664
+ + + +A L L
Sbjct: 568 QDQDVDVKYFAQEALTVL 585
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 4e-04
Identities = 56/397 (14%), Positives = 124/397 (31%), Gaps = 44/397 (11%)
Query: 1260 SLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECE 1319
SL + LI L RL++ + L + A + + +P L D + E
Sbjct: 8 SLYPIAVLIDELRNEDVQLRLNSIKKLSTI--ALALGVERTRSELLPFLTDTIYDEDEVL 65
Query: 1320 LEVA--LVALVKLTSGNTSKACLLTDIDGNL-----------LESLYKILSSNSSLELKR 1366
L +A L L G CLL ++ +ESL I +S +L+
Sbjct: 66 LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125
Query: 1367 NAAEL----------------CFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410
+ L C + +++ + +E Q +L D +V +A
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAA 185
Query: 1411 CAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKL-QMV 1469
+ + +++ + L S + V A + + + L +V
Sbjct: 186 SKLGEFAKVLELDNVKS--EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALV 243
Query: 1470 KAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSL 1529
+ D + EL + + + P F L++ D
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-------EITKTDLVPAFQNLMK-DCEA 295
Query: 1530 WGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQE 1589
+ +A + E + + SQ++ + + + ++ ++ L
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS--P 353
Query: 1590 HFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKI 1626
+D T ++ + + ++ + L+ +
Sbjct: 354 ILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCV 390
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 5e-07
Identities = 35/301 (11%), Positives = 74/301 (24%), Gaps = 51/301 (16%)
Query: 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK 568
+ L +LL+ + R +A VL + AV +
Sbjct: 16 LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLR-----------GGQDAVRLAIEFCS 64
Query: 569 SGGPKGQDASAMALTKL--IRAADSATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQ 625
+D A L ++ + + N L + L D S +A I+
Sbjct: 65 DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPI 124
Query: 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCM 685
K + + + A + + + +
Sbjct: 125 YSP--------KIVEQSQITAFDKSTNVRRATAFAI-----------SVINDKATIPLLI 165
Query: 686 RLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAV 745
LL V +A A+ +++ + + + A+
Sbjct: 166 NLLKDPNGDVRNWAAFAININKYDN------------SDIRDCFVEMLQDKNEEVRIEAI 213
Query: 746 AALANLLSDPDIAAEVLL---EDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVL 802
L+ ++ V + E G K L +L F +++
Sbjct: 214 IGLSYRKDKRVLSVLCDELKKNTVYDDIIEAAGE---LGDKTLLPVLDTMLYKFDDNEII 270
Query: 803 K 803
Sbjct: 271 T 271
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 32/309 (10%), Positives = 80/309 (25%), Gaps = 78/309 (25%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSS--------GGLSDDH-------------VGMK 165
L LL ++ R ++A L SD + + +
Sbjct: 25 DDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC 84
Query: 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL 225
+ V L + N + V+ + V+
Sbjct: 85 KKCEDNVFNILNNMAL--NDKSACVRATAIESTAQR-----CKKNPIYSPKIVEQSQITA 137
Query: 226 SSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEA 285
+ + A ++ + D + L+ L+ ++ + VR AA A+
Sbjct: 138 FDKSTNVRRATAFAISVIN-----------DKATIPLLINLL-KDPNGDVRNWAAFAI-- 183
Query: 286 LSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALV 345
+D + + ++E ++ A L+ ++
Sbjct: 184 -------NINKYDNSDIRDCFVEMLQDKNEE---------VRIEAIIGLSYR--KDKRVL 225
Query: 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405
L + + + + + G L + + +L +L D+
Sbjct: 226 SVLCDELKKNTVYDDIIEAAGELG------------------DKTLLPVLDTMLYKFDDN 267
Query: 406 LVQERVLEA 414
+ ++
Sbjct: 268 EIITSAIDK 276
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 41/234 (17%), Positives = 73/234 (31%), Gaps = 53/234 (22%)
Query: 518 IPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDA 577
+ ++ L+ S R AA+ L + AV + LK + A
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRA 69
Query: 578 SAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANK 637
+A AL ++ D + L+ L + + LG + +
Sbjct: 70 AADALGQI---GDERAVEPLIKALKDEDGWVRQSAAVALGQI--------------GDER 112
Query: 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697
+ L++ L + + AA L G + + V P ++ L V
Sbjct: 113 AVEPLIKALKDEDWFVRIAAAFAL-----------GEIGDERAVEPLIKALKDEDGWVRQ 161
Query: 698 QSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751
+A ALG + + KLA+T + A + AV L
Sbjct: 162 SAADALGEIGGER--------------VRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 38/183 (20%), Positives = 70/183 (38%), Gaps = 42/183 (22%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSS--------GGLSDDHVGMKIFVTEG------- 171
+ + L+ +S R+AAA AL ++ L D+ ++ +
Sbjct: 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE 80
Query: 172 -VVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNA 230
V L L ++ V+ AL + G RA V+ ++ L ++
Sbjct: 81 RAVEPLIKALKDEDGW---VRQSAAVALGQI-----GDERA------VEPLIKALKDEDW 126
Query: 231 AAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKS 290
+ AA L + D AV+ L++ + ++ D VR SAADAL + +
Sbjct: 127 FVRIAAAFALGEIG-----------DERAVEPLIKAL-KDEDGWVRQSAADALGEIGGER 174
Query: 291 IKA 293
++A
Sbjct: 175 VRA 177
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 2e-05
Identities = 44/273 (16%), Positives = 80/273 (29%), Gaps = 31/273 (11%)
Query: 462 REVGIWEA---IGKREGIQLLISLLGLSSEQHQEYAVQLIAIL--TEQVDDSKWAITAAG 516
++G I ++E + LL+SLL + V+L+ L + + +
Sbjct: 107 EDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPM 166
Query: 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS-GGPKGQ 575
G+ L+ LL + R +L L + I+ V A L ++ G G
Sbjct: 167 GVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGG 226
Query: 576 DASAMALTKLIRAADSATINQ-----------LLALLLGDSPSSKAHVIKVLGHVLTMAL 624
L L + NQ + +S KV L + L
Sbjct: 227 IVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQL 286
Query: 625 QEDLV------------QKGSAANKGLRSLVQVLNSSNEENQ--EYAASVLADLFSMRQD 670
LV QK L+ L +L ++ + ++++ Q
Sbjct: 287 VRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQV 346
Query: 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARAL 703
A+ + R M +
Sbjct: 347 NQDYFASVNAPSNPPRPAIVVLLMSMVNERQPF 379
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 28/158 (17%), Positives = 54/158 (34%), Gaps = 42/158 (26%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186
+ P S + E+ R+ + AL + D+ L + L+ ++ +
Sbjct: 14 LVPRGSHMADENKWVRRDVSTAL-----SRMGDE-----------AFEPLLESLSNEDWR 57
Query: 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246
++G + N RA V+ ++ LL D+ +S AA L ++
Sbjct: 58 ---IRGAAAWIIGNF-----QDERA------VEPLIKLLEDDSGFVRSGAARSLEQI--- 100
Query: 247 FGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALE 284
G A+ +L + R A + LE
Sbjct: 101 -G-------GERVRAAMEKLA-ETGTGFARKVAVNYLE 129
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 38/207 (18%), Positives = 66/207 (31%), Gaps = 51/207 (24%)
Query: 82 HAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDT 141
+A+ I L+ + A L + DE + PL+ LK E
Sbjct: 43 DERAVEPLIKALKDEDAWVRRAAADALGQI-GDER---------AVEPLIKALKDEDGWV 92
Query: 142 RKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNL 201
R++AA AL ++ E V L L ++ V+ AL +
Sbjct: 93 RQSAAVALGQIGD---------------ERAVEPLIKALKDEDWF---VRIAAAFALGEI 134
Query: 202 CGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVK 261
GD+ V+ ++ L ++ + +AA L +
Sbjct: 135 -GDERA----------VEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRA 172
Query: 262 ALVQLVGQNNDISVRASAADALEALSS 288
A+ +L + R A + LE S
Sbjct: 173 AMEKLA-ETGTGFARKVAVNYLETHKS 198
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 33/206 (16%), Positives = 67/206 (32%), Gaps = 42/206 (20%)
Query: 518 IPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDA 577
+ ++ L+ S R AA+ L + AV + LK + A
Sbjct: 16 VEMYIKNLQDDSYYVRRAAAYAL-----------GKIGDERAVEPLIKALKDEDAWVRRA 64
Query: 578 SAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHV--------LTMALQED-- 627
+A AL ++ D + L+ L + + LG + L AL+++
Sbjct: 65 AADALGQI---GDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDW 121
Query: 628 LVQKGSA-------ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEI 680
V+ +A + + L++ L + ++ AA L G + + +
Sbjct: 122 FVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADAL-----------GEIGGERV 170
Query: 681 VNPCMRLLTSNTQMVATQSARALGAL 706
+L + T + L
Sbjct: 171 RAAMEKLAETGTGFARKVAVNYLETH 196
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 3e-04
Identities = 42/214 (19%), Positives = 75/214 (35%), Gaps = 24/214 (11%)
Query: 424 LSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGK--REGI-QLLI 480
L Q + + LI ++T ++ LS L ++ + I +
Sbjct: 37 LEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECL 96
Query: 481 SLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVL 540
+ +G SS + LI + + + W +P L LL++ E A L
Sbjct: 97 NNIGDSSPLIRATVGILITTIASKGELQNW----PDLLPKLCSLLDSEDYNTCEGAFGAL 152
Query: 541 WILCCHSEDIRACVES-------AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSAT 593
+C ED ++S +P FL K PK + + + + I + A
Sbjct: 153 QKIC---EDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209
Query: 594 -------INQLLALLLGDSPSSKAHVIKVLGHVL 620
I L AL + P + +V + L +L
Sbjct: 210 MLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL 243
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 35/174 (20%), Positives = 72/174 (41%), Gaps = 24/174 (13%)
Query: 127 IPPLLSLL-KSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNK 185
+ L SLL KSE+ + A+A +++ + + ++P L+ ++
Sbjct: 71 LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE---------LVKSMIPVLFANYRIGDE 121
Query: 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245
+ + V+ AL + L A V + +LSS N + A + + +
Sbjct: 122 K---TKINVSYALEEIAKANP-----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173
Query: 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVA 299
+ + + ++ L+ + D VRASA +AL L++ + K +K V+
Sbjct: 174 NSFKYV-----NPFLPRIINLL-HDGDEIVRASAVEALVHLATLNDKLRKVVIK 221
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2054 | |||
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 100.0 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 100.0 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 99.97 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.97 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 99.97 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.97 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.97 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.97 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 99.96 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.96 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.96 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 99.96 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.96 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.96 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 99.96 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 99.95 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.93 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.92 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.92 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.89 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.87 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.86 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.86 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.84 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.84 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.84 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.84 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.82 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.76 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.76 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.75 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.75 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.73 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.73 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.72 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.71 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.69 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.67 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.66 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.63 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.54 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.54 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.51 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.47 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.46 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.43 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.38 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.38 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.26 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.22 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.22 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.22 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.16 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.15 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.98 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.91 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.84 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.55 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.36 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.33 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.1 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.94 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.9 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 97.85 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.85 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.78 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.75 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.73 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 97.69 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 97.69 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 97.59 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.54 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 97.41 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 97.31 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.23 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.13 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 97.1 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.06 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.0 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 96.92 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 96.85 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 96.85 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.66 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.62 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 96.42 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.3 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 96.29 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 96.15 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 96.11 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 96.04 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 95.19 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 94.71 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 92.47 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 92.38 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 91.06 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 90.9 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 90.35 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 89.94 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 88.76 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 87.34 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 86.55 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 86.25 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 85.62 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 84.59 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 83.63 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 83.26 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 82.59 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 81.1 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 80.19 |
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-43 Score=460.65 Aligned_cols=709 Identities=16% Similarity=0.152 Sum_probs=557.5
Q ss_pred chhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcc
Q 000145 35 ESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRS-GTPLAKVNVAATLSVLCK 113 (2054)
Q Consensus 35 ~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks-~s~evr~~AA~vL~~Ls~ 113 (2054)
.+|.++|.+|++-+.+.+.+.+.|++|..+|..|++++..+..++. .|||..|..+|++ .++++...|.++|..+|+
T Consensus 2 ~~~~~kv~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~aga~~i~~--~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~ 79 (810)
T 3now_A 2 AKTSTKVKQMMDLTFDLATPIDKRRAAANNLVVLAKEQTGAELLYK--DHCIAKVASLTKVEKDQDIYVNMVHLVAALCE 79 (810)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHHHHHHHH--TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHHHHHHHcccccCHHHHHHHHhhceeeeccccchHHHHh--CchHHHHHHHHhccCchhHHHHHHHHHHHHHh
Confidence 3678999999999988788889999999999999999877777664 5999999999999 789999999999999999
Q ss_pred CchhHHH-HHhcCChHHHHHhhccCCHHHHHHHHHHHHHHh---cCCCCCChhHH-HHHHHc------CcHHHHHHhhCC
Q 000145 114 DEDLRLK-VLLGGCIPPLLSLLKSESTDTRKAAAEALYEVS---SGGLSDDHVGM-KIFVTE------GVVPTLWDQLNP 182 (2054)
Q Consensus 114 ~ee~r~~-v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS---~~~~nk~~~~r-e~Iv~a------G~Vp~Lv~LL~s 182 (2054)
++..|.. +...=++|.+++++.+++++...+++..|..+- .+++++.+.++ +.++.. ..+..|++++.+
T Consensus 80 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 159 (810)
T 3now_A 80 NSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITD 159 (810)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhc
Confidence 9877764 445578999999999988888887777665543 22333333222 222222 267778888887
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCCchhH-HHHhhCChHHHHhhhccC-----------CHHHHHHHHHHHHHHHhhcC-C
Q 000145 183 KNKQDNVVQGFVTGALRNLCGDKDGYWR-ATLEAGGVDIIVGLLSSD-----------NAAAQSNAASLLARLMLAFG-D 249 (2054)
Q Consensus 183 ~s~~d~~V~e~Al~aL~nL~~~~e~r~~-aI~eaGGI~~LV~LL~s~-----------s~evq~~A~~aL~nLs~~~~-~ 249 (2054)
.... ...+..++..|..-....+..+. -....+|+..++...... .+++|.++.-+|.++...-. +
T Consensus 160 ~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~ 238 (810)
T 3now_A 160 RTIS-GAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYD 238 (810)
T ss_dssp TTSC-HHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSH
T ss_pred cccC-hhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccc
Confidence 7633 35577888888777755543222 244467998888876651 45799999999999984211 1
Q ss_pred CcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHH-hcCCHHHHHHhhcCCchhhhhhhhhhhhhh
Q 000145 250 SIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVV-AADGVPVLIGAIVAPSKECMQGQRGQALQG 328 (2054)
Q Consensus 250 ~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~-eaggL~~LIeLL~s~s~e~~q~~~~~~lqe 328 (2054)
..+.....-+-..+-..+. ..+.+.+..+.+++.++....++....+. ..|.++.|+.++.+++.. .|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~---------~q~ 308 (810)
T 3now_A 239 EAKARFTDQIDEYIKDKLL-APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDEL---------QQR 308 (810)
T ss_dssp HHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHH---------HHH
T ss_pred hhHHHHHHHHHHHHHHHhc-cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHH---------HHH
Confidence 1123333334455555555 45667778899999999888778777666 789999999999987654 678
Q ss_pred HHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHH
Q 000145 329 HATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQ 408 (2054)
Q Consensus 329 ~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq 408 (2054)
.|++++.+++++ . ..++.+...++ ++|+.+++..++ .+|
T Consensus 309 ~A~~al~~aa~~-~--------------------------------------~~R~~I~~~gv-~~L~~Ll~s~~~-~vr 347 (810)
T 3now_A 309 VACECLIAASSK-K--------------------------------------DKAKALCEQGV-DILKRLYHSKND-GIR 347 (810)
T ss_dssp HHHHHHHHHTTS-H--------------------------------------HHHHTTHHHHH-HHHHHHTTCSCH-HHH
T ss_pred HHHHHHHHHcCC-c--------------------------------------HHHHHHHHcCc-HHHHHHHcCCCH-HHH
Confidence 899998887652 1 11233344566 899999987664 589
Q ss_pred HHHHHHHHHhhcCh--hhhHHHhhcc----hHHHHHHHhccC--CHHHHHHHHHHHHHhcccCccchhhhh-ccccHHHH
Q 000145 409 ERVLEAMASLYGNI--FLSQWVSHAE----AKKVLIGLITMA--TADVREYLILSLTKLCRREVGIWEAIG-KREGIQLL 479 (2054)
Q Consensus 409 ~~Aa~AL~~L~~n~--~~~~~L~~~g----~I~~LI~LL~ss--d~evq~~Aa~AL~~Ls~~s~e~r~~Iv-e~ggIp~L 479 (2054)
.+++.+|+++..+. +........+ .++.++.++.++ +.+++..++++|.+++.+ ++.+..++ +.|++|.|
T Consensus 348 ~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~-~~vk~~lv~d~g~Ip~L 426 (810)
T 3now_A 348 VRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD-AECKEKLIEDKASIHAL 426 (810)
T ss_dssp HHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS-HHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHccchHHHH
Confidence 99999999996432 2222222233 356788888887 899999999999999998 56666665 57899999
Q ss_pred HhhhcCCChhhhHHHHHHHHHHhhhccc-----------------------------hh---hHHHhhCCCchHhhhhhc
Q 000145 480 ISLLGLSSEQHQEYAVQLIAILTEQVDD-----------------------------SK---WAITAAGGIPPLVQLLEA 527 (2054)
Q Consensus 480 V~LL~s~d~~Vr~~Aa~aL~nLs~~s~e-----------------------------~r---~~I~~aGaIp~LV~LL~s 527 (2054)
++++++++..++..++++|.||+...+. .+ ..+.+.|++|+|+.+|++
T Consensus 427 V~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s 506 (810)
T 3now_A 427 MDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT 506 (810)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence 9999999999999999999999984321 12 567889999999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcc
Q 000145 528 GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPS 607 (2054)
Q Consensus 528 ~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~ 607 (2054)
+++.+|+.|+++|+||+. ++++|..+.+.|++++|+.+++++++.+++.|+|+|.|++.+.+ +.
T Consensus 507 ~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~---------------p~ 570 (810)
T 3now_A 507 ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN---------------PE 570 (810)
T ss_dssp CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC---------------HH
T ss_pred CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC---------------hh
Confidence 999999999999999997 46689999999999999999999999999999999999986522 11
Q ss_pred hHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHH
Q 000145 608 SKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMR 686 (2054)
Q Consensus 608 V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~ 686 (2054)
... .. . ...|++++|+.++.++ +...+..|+++|.||+..+++.+..+++.|+++.|+.
T Consensus 571 ~~~-------------~~----~---~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~ 630 (810)
T 3now_A 571 VSF-------------SG----Q---RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEY 630 (810)
T ss_dssp HHT-------------TT----H---HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred hhh-------------cc----h---hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH
Confidence 000 00 0 0124799999999866 4455678999999999977889999999999999999
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHh-cCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHh-
Q 000145 687 LLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIA-EGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLL- 763 (2054)
Q Consensus 687 LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~-~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~- 763 (2054)
++.++++.+++.|+++|+||+.+ . ..+..+.+ .|.+++|+.++.+.+.+++.+|+++|+||+. ++...+.+++
T Consensus 631 LL~s~~~~Vq~~A~~~L~NLa~~--~--~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~ 706 (810)
T 3now_A 631 YLMEDHLYLTRAAAQCLCNLVMS--E--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI 706 (810)
T ss_dssp HHHSCCTTHHHHHHHHHHHHTTS--H--HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS
T ss_pred HHcCCCHHHHHHHHHHHHHHhCC--h--HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999862 2 45555554 7899999999999999999999999999998 7888888888
Q ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCC-CCchhHHHHHHHHHHHhh
Q 000145 764 EDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMD-MNGTDVADALEVVALLAR 841 (2054)
Q Consensus 764 ~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~-~~~~~~~~AL~ALa~La~ 841 (2054)
.|++++|++++.+++.++|+.|+|++.|++... +.....+...|++++|+++++..+ .+.+....|+++|.++-.
T Consensus 707 ~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s---~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 707 ASWLDILHTLIANPSPAVQHRGIVIILNMINAG---EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC---HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC---HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 899999999999999999999999999999854 567778888999999999997542 355678888999988874
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-44 Score=472.46 Aligned_cols=689 Identities=16% Similarity=0.168 Sum_probs=522.4
Q ss_pred hHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcC
Q 000145 127 IPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204 (2054)
Q Consensus 127 Ip~LV~LL~s--ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~ 204 (2054)
+..|++++.+ .+.+-|+.|++.|..|+. ++.|.+.|+++|++..|..++++.+ ++.+.-.|+++|..+|.+
T Consensus 8 v~~m~~i~~~~~~~~~~~~~a~~nl~vl~r-----e~aga~~i~~~~~~~~~~~l~~~~~--~~~~~~~~~r~~~~~~~~ 80 (810)
T 3now_A 8 VKQMMDLTFDLATPIDKRRAAANNLVVLAK-----EQTGAELLYKDHCIAKVASLTKVEK--DQDIYVNMVHLVAALCEN 80 (810)
T ss_dssp HHHHHHHHHSSCCSSHHHHHHHHHHHHHSS-----CHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccccCHHHHHHHHhhceeeec-----cccchHHHHhCchHHHHHHHHhccC--chhHHHHHHHHHHHHHhc
Confidence 5678888876 488999999999999995 7899999999999999999999643 356899999999999999
Q ss_pred CCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHh--hcCCCcch------hc------ccchHHHHHHHhccC
Q 000145 205 KDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML--AFGDSIPT------VI------DSGAVKALVQLVGQN 270 (2054)
Q Consensus 205 ~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~--~~~~~r~~------i~------~sGaL~~LL~LL~s~ 270 (2054)
+..|...+.+.-|+++++.++.+.++++...++.+++.+.. ...+.+.. +. -...+..|+.++.+
T Consensus 81 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 159 (810)
T 3now_A 81 SVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITD- 159 (810)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTC-
T ss_pred cHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhc-
Confidence 99999999999999999999999999999999999998883 11111111 11 12345566666652
Q ss_pred CChhHHHHHHHHHHHHhhc-----cHHHHHHHHhcCCHHHHHHhhcCCch----hhhhhhhhhhhhhHHHHHHHHHhcCc
Q 000145 271 NDISVRASAADALEALSSK-----SIKAKKAVVAADGVPVLIGAIVAPSK----ECMQGQRGQALQGHATRALANIYGGM 341 (2054)
Q Consensus 271 ~d~~Vr~~Aa~aL~nLs~~-----s~e~Rk~I~eaggL~~LIeLL~s~s~----e~~q~~~~~~lqe~Al~ALanLsGgi 341 (2054)
..+...+++...++..+ ..+....+...+|+..|++....-.. ..++ .+.+ .|.++..+|++++
T Consensus 160 --~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~-~~~~-~r~~~~~~l~~~~--- 232 (810)
T 3now_A 160 --RTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMD-ITGS-SSTIASVCLARIY--- 232 (810)
T ss_dssp --TTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCC-CCTT-HHHHHHHHHHHHH---
T ss_pred --cccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCC-CChh-HHHHHHHHHHHHH---
Confidence 22333344444444333 11222336667888888887755211 0011 1111 5556666665554
Q ss_pred hhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhh-c
Q 000145 342 PALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLY-G 420 (2054)
Q Consensus 342 s~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~-~ 420 (2054)
..+.++ ..++.|.+ .+..++...+...+.+ -+..++.+++++. +
T Consensus 233 -----------------------------~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~a~~alt~i~~g 277 (810)
T 3now_A 233 -----------------------------ENMYYD----EAKARFTD-QIDEYIKDKLLAPDME-SKVRVTVAITALLNG 277 (810)
T ss_dssp -----------------------------HTCCSH----HHHHHHHH-HHHHHHHHHHSSCCHH-HHHHHHHHHHHHHSS
T ss_pred -----------------------------HHhccc----hhHHHHHH-HHHHHHHHHhccCChH-hHHHHHHHHHHHhcC
Confidence 333222 11233332 4567888888777766 5789999999995 5
Q ss_pred ChhhhHHHh-hcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHH
Q 000145 421 NIFLSQWVS-HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIA 499 (2054)
Q Consensus 421 n~~~~~~L~-~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~ 499 (2054)
.++....+. ..|+++.++.++.+.++.+|+.|++++.+++.+ +..+..+.+.| +|.|+.+++++++.+|..|+.+|+
T Consensus 278 ~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~g-v~~L~~Ll~s~~~~vr~~Al~~L~ 355 (810)
T 3now_A 278 PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCEQG-VDILKRLYHSKNDGIRVRALVGLC 355 (810)
T ss_dssp SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHH-HHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcC-cHHHHHHHcCCCHHHHHHHHHHHH
Confidence 567777766 668999999999999999999999999998877 78888888865 599999999999999999999999
Q ss_pred HHhhhcc-chhhHHHhhCCC----chHhhhhhcC--CHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh
Q 000145 500 ILTEQVD-DSKWAITAAGGI----PPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP 572 (2054)
Q Consensus 500 nLs~~s~-e~r~~I~~aGaI----p~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~ 572 (2054)
+++.... +....+++.|++ +.|+++|.++ +++++++|+++|.+|+.+.+.....+.+.|++|.|+.+++++++
T Consensus 356 kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~ 435 (810)
T 3now_A 356 KLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ 435 (810)
T ss_dssp HHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCG
T ss_pred HhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCCh
Confidence 9975322 333344445554 4567778877 89999999999999998766666666678999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH---hhhhcccchHHHHHHhcc
Q 000145 573 KGQDASAMALTKLIRAAD-SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ---KGSAANKGLRSLVQVLNS 648 (2054)
Q Consensus 573 evq~~AA~AL~nLs~~~e-~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~---~~l~~~GaI~~LV~LLks 648 (2054)
.+++.++++|.|++...+ .+.++.+.++.+..+.++... ...+..+.++ +.+.+.|+++.|+.++++
T Consensus 436 ~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~---------~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s 506 (810)
T 3now_A 436 SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE---------HELDDVDFINKRITVLANEGITTALCALAKT 506 (810)
T ss_dssp GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCS---------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccc---------cccccHHHHHHHHHHHHHCcCHHHHHHHHcC
Confidence 999999999999998532 334445555555443322110 1112233444 456788999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhH-HHHhcCChh
Q 000145 649 SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM-SYIAEGDVK 727 (2054)
Q Consensus 649 ~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~-~I~~~gaV~ 727 (2054)
+++++|+.|+++|.||+. +++++..+++.|++++|+.+|+++++.+++.|++||.||+.+... .... .....|+++
T Consensus 507 ~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p--~~~~~~~~~~~aIp 583 (810)
T 3now_A 507 ESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP--EVSFSGQRSLDVIR 583 (810)
T ss_dssp CCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH--HHHTTTHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh--hhhhcchhhhcHHH
Confidence 999999999999999997 788999999999999999999999999999999999999873221 1110 001246999
Q ss_pred hHHhhhhcC-CHHHHHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhh
Q 000145 728 PLIKLAKTS-SIDAAETAVAALANLLSD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGN 805 (2054)
Q Consensus 728 ~Lv~LL~s~-d~~Vre~Al~AL~NLa~~-~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~ 805 (2054)
+|+.+|+++ +...+.+|+++|.||+.. ++.+..+++.|+++.|+.++.++++.+|+.|+++|+||+.+. .....
T Consensus 584 pLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~----~~~~~ 659 (810)
T 3now_A 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE----DVIKM 659 (810)
T ss_dssp HHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH----HHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh----HHHHH
Confidence 999999875 445566899999999985 577889999999999999999999999999999999999863 34444
Q ss_pred hhh-hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh-cccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHH
Q 000145 806 AQC-RFVVLTLVDSLNAMDMNGTDVADALEVVALLAR-TKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIE 883 (2054)
Q Consensus 806 i~~-~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~-~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~ 883 (2054)
+.. .+.++.|+.++.+. +...+.+|..+|++++. +......+. ..++|+++|+.++.+++..+|+.|+.
T Consensus 660 ~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanLt~~s~~~~~~ii-------~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDE--DEETATACAGALAIITSVSVKCCEKIL-------AIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp HHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHCHHHHHHHH-------TSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHH-------HHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 444 67899999999764 35669999999999996 322222221 12689999999999999999999999
Q ss_pred HHHHhhccC
Q 000145 884 ILSRLCGDQ 892 (2054)
Q Consensus 884 iL~~L~~~~ 892 (2054)
+|.|+....
T Consensus 731 aL~NL~~~s 739 (810)
T 3now_A 731 IILNMINAG 739 (810)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhCC
Confidence 999998743
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-36 Score=378.34 Aligned_cols=506 Identities=20% Similarity=0.201 Sum_probs=419.9
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhc-CChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCC
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDD 160 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~-GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~ 160 (2054)
.|++|.|+.+|+++++.++..|+.+|.+++.+++++..+... |+++.|+++|.+ ++++++..|+.+|.+++. +
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-----~ 90 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-----H 90 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-----S
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-----C
Confidence 689999999999999999999999999999988888777755 899999999986 599999999999999996 4
Q ss_pred hhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHH
Q 000145 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2054)
Q Consensus 161 ~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL 240 (2054)
+.++..+++.|++|.|+++|.+++ +.++..++++|.+++.+++.....+.+.|+++.|+.++.+++.+++..++.+|
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L 167 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 568999999999999999998754 67899999999999998777778888999999999999999999999999999
Q ss_pred HHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000145 241 ARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2054)
Q Consensus 241 ~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~ 320 (2054)
.+++..+++.+..+.+.|+++.|+.+++.+.+...+..+..+|.+++. +++.+..+.+.|+++.|++++.+++.+
T Consensus 168 ~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~---- 242 (529)
T 1jdh_A 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 242 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHH----
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChH----
Confidence 999987777788888899999999999866666777788899999998 588899999999999999988766433
Q ss_pred hhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcC
Q 000145 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK 400 (2054)
Q Consensus 321 ~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk 400 (2054)
++..+..+|.+++.
T Consensus 243 -----~~~~a~~~L~~l~~------------------------------------------------------------- 256 (529)
T 1jdh_A 243 -----LVQNCLWTLRNLSD------------------------------------------------------------- 256 (529)
T ss_dssp -----HHHHHHHHHHHHHT-------------------------------------------------------------
T ss_pred -----HHHHHHHHHHHHhc-------------------------------------------------------------
Confidence 44455555555432
Q ss_pred CCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHH
Q 000145 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2054)
Q Consensus 401 ~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV 480 (2054)
+.... ....++++.|+.++.+.+++++..++.+|.+++..+++.+..+.+.|+++.|+
T Consensus 257 --------------------~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~ 314 (529)
T 1jdh_A 257 --------------------AATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp --------------------TCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred --------------------CChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHH
Confidence 11000 00125677888888888899999999999999988777888999999999999
Q ss_pred hhhcCC--ChhhhHHHHHHHHHHhhhccc---hhhHHHhhCCCchHhhhhhcCC-HHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 481 SLLGLS--SEQHQEYAVQLIAILTEQVDD---SKWAITAAGGIPPLVQLLEAGS-QKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 481 ~LL~s~--d~~Vr~~Aa~aL~nLs~~s~e---~r~~I~~aGaIp~LV~LL~s~s-~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
+++... ++.++..++.+|+||+..+++ .+..+.+.|+++.|+++|.+++ +.++..++++|+|++.+ +..+..+
T Consensus 315 ~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~ 393 (529)
T 1jdh_A 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPL 393 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHH
Confidence 999753 468999999999999885444 4668889999999999999885 69999999999999985 4456778
Q ss_pred HHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhh
Q 000145 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634 (2054)
Q Consensus 555 ~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~ 634 (2054)
.+.|+++.|+.+++++++++|..++|++.|....
T Consensus 394 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~---------------------------------------------- 427 (529)
T 1jdh_A 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV---------------------------------------------- 427 (529)
T ss_dssp HHTTHHHHHHHHHHHHHHHHC-----------CB----------------------------------------------
T ss_pred HHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhh----------------------------------------------
Confidence 8899999999999998899999999988773200
Q ss_pred cccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCccc
Q 000145 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2054)
Q Consensus 635 ~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d 714 (2054)
.|+ ..+++++.++.+|.+|+. +++++..+.+.|+++.|+.++.++++.++..|+++|++++. ..
T Consensus 428 -~~~----------~~~~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~--~~-- 491 (529)
T 1jdh_A 428 -EGV----------RMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DK-- 491 (529)
T ss_dssp -TTB----------CHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT--SH--
T ss_pred -ccc----------cHHHHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc--CH--
Confidence 000 123455678889999987 68888999999999999999999999999999999999985 23
Q ss_pred chhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 715 TNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 715 ~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
..+..+.+.|++++|..++++++++++..|.++|.+|+
T Consensus 492 ~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 57778899999999999999999999999999999874
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=396.34 Aligned_cols=544 Identities=18% Similarity=0.202 Sum_probs=439.6
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChh
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~ 162 (2054)
..+++.++..|++++.+++..++..+... .+..+ ..|+++.|+++|.++++.+|+.|+.+|.+|+. ...
T Consensus 114 ~~~i~~lv~~L~~~~~~~r~~a~~~l~~~-----~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~-----~~~ 182 (780)
T 2z6g_A 114 DSAHPTNVQRLAEPSQMLKHAVVNLINYQ-----DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-----KEA 182 (780)
T ss_dssp ------------CCSCHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHT-----SHH
T ss_pred cccHHHHHHHhcCccHHHHHHHHHHHHhh-----hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhC-----CCh
Confidence 35789999999999999999888888754 22233 37999999999999999999999999999996 345
Q ss_pred HHHHHHHc-CcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHH
Q 000145 163 GMKIFVTE-GVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2054)
Q Consensus 163 ~re~Iv~a-G~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~ 241 (2054)
++..+++. |+++.|+++|..+. +..++..|+.+|.+++...+. ...+.+.|+++.|+.+|.++++.++..|+++|.
T Consensus 183 ~~~~i~~~~~~i~~Lv~~L~~~~--d~~vr~~Aa~aL~~Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 183 SRHAIMRSPQMVSAIVRTMQNTN--DVETARCTSGTLHNLSHHREG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLH 259 (780)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTSHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hHHHHHhccChHHHHHHHHcCCC--CHHHHHHHHHHHHHHhCCchh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 56677644 89999999997553 466899999999999987655 577888899999999999999999999999999
Q ss_pred HHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhh
Q 000145 242 RLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQ 321 (2054)
Q Consensus 242 nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~ 321 (2054)
+++..++..+..+.+.|+++.|+.++.+ .+..++..+..+|.+++..+++.+..+.+.|+++.|+.++.+++.+
T Consensus 260 nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~----- 333 (780)
T 2z6g_A 260 NLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE----- 333 (780)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCH-----
T ss_pred HHhCCChhhHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHH-----
Confidence 9998777777778889999999999984 6778899999999999987788888888888888887766543311
Q ss_pred hhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCC
Q 000145 322 RGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKP 401 (2054)
Q Consensus 322 ~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~ 401 (2054)
T Consensus 334 -------------------------------------------------------------------------------- 333 (780)
T 2z6g_A 334 -------------------------------------------------------------------------------- 333 (780)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHh
Q 000145 402 HDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLIS 481 (2054)
Q Consensus 402 ~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~ 481 (2054)
..+..++.+|.+++....++..+...++++.|+.++.+.+..++..++.+|.+++..... .....+.++.|++
T Consensus 334 ----~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~i~~Lv~ 406 (780)
T 2z6g_A 334 ----KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQ 406 (780)
T ss_dssp ----HHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh---hhhhhhHHHHHHH
Confidence 133444555566655556666777889999999999999999999999999999976432 2234578999999
Q ss_pred hhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC-C-HHHHHHHHHHHHHHhcCChh---HHHHHHH
Q 000145 482 LLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-S-QKAREVAAHVLWILCCHSED---IRACVES 556 (2054)
Q Consensus 482 LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-s-~~Vre~AA~aL~nLa~~sd~---~r~~I~e 556 (2054)
++++.+..++..|+++|++|+.++++++..+.+.|+++.|+++|.+. + +.++..|+++|++|+..+.+ .+..+.+
T Consensus 407 lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~ 486 (780)
T 2z6g_A 407 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRL 486 (780)
T ss_dssp HTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 99999999999999999999997778888999999999999999863 3 59999999999999875433 4667788
Q ss_pred cCChHHHHHhhccCCh-hHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc
Q 000145 557 AGAVPAFLWLLKSGGP-KGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA 635 (2054)
Q Consensus 557 ~GaI~aLV~LLkS~~~-evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~ 635 (2054)
.++++.|+.++++++. .++..++++|+|++...+ . +..+.+
T Consensus 487 ~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-------------------------------------~-~~~i~~ 528 (780)
T 2z6g_A 487 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-------------------------------------N-HAPLRE 528 (780)
T ss_dssp TTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-------------------------------------H-HHHHHH
T ss_pred cCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-------------------------------------H-HHHHHH
Confidence 9999999999998775 999999999999974311 0 112345
Q ss_pred ccchHHHHHHhccCCHHHHHHHHHHHHH--HhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc
Q 000145 636 NKGLRSLVQVLNSSNEENQEYAASVLAD--LFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 636 ~GaI~~LV~LLks~s~evre~Aa~ALan--Las~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
.|+++.|+.++++++.+++..+++++.| +.. | ...+.++..++.+|++|+. ..
T Consensus 529 ~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~------------~----------~~~~~v~~~a~~aL~~La~--~~- 583 (780)
T 2z6g_A 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE------------G----------VRMEEIVEACTGALHILAR--DI- 583 (780)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTC------CCST------------T----------CCHHHHHHHHHHHHHHHTT--SH-
T ss_pred CCCHHHHHHHHHhcchhHHHHHhhccccchhhc------------c----------cChHHHHHHHHHHHHHHhc--Ch-
Confidence 6789999999998888899988887776 211 1 1235678899999999986 33
Q ss_pred cchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 000145 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2054)
Q Consensus 714 d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~ 793 (2054)
.++..+.+.|++++|+.+|.+.++.++..|+.+|++|+.+++.+..+.+.|+++.|++++.+.++++|+.|+++|.+++
T Consensus 584 -~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~ 662 (780)
T 2z6g_A 584 -HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662 (780)
T ss_dssp -HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred -hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 6777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q 000145 794 KHFP 797 (2054)
Q Consensus 794 ~~~~ 797 (2054)
.+.+
T Consensus 663 ~~~~ 666 (780)
T 2z6g_A 663 EDKP 666 (780)
T ss_dssp TTSC
T ss_pred cCCh
Confidence 9765
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=373.23 Aligned_cols=508 Identities=18% Similarity=0.194 Sum_probs=417.2
Q ss_pred HhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHc-CcHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q 000145 122 LLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-GVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200 (2054)
Q Consensus 122 ~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~a-G~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~n 200 (2054)
...|+++.|+++|+++++.+|..|+.+|.+++. +..++..++.. |+++.|+++|.++. +..++..++++|++
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-----~~~~~~~~~~~~~~i~~Lv~~L~~~~--~~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-----KEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHN 86 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-----SHHHHHHHHTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-----CCccHHHHHhCcchHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 456899999999999999999999999999996 34567677754 89999999997543 45689999999999
Q ss_pred HhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHH
Q 000145 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2054)
Q Consensus 201 L~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa 280 (2054)
++..++ ....+.+.|+++.|+.+|.++++.++..++++|++++..++..+..+.+.|+++.|+.++.+ .+..++..+.
T Consensus 87 ls~~~~-~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~ 164 (529)
T 1jdh_A 87 LSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITT 164 (529)
T ss_dssp HTTSHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHHHHHH
T ss_pred HHcCch-hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHHHHHH
Confidence 998766 55778889999999999999999999999999999998777777778889999999999984 6678899999
Q ss_pred HHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhh
Q 000145 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2054)
Q Consensus 281 ~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~ 360 (2054)
.+|.+++..+++.+..+.+.|+++.|++++.+++.+
T Consensus 165 ~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~-------------------------------------------- 200 (529)
T 1jdh_A 165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE-------------------------------------------- 200 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCH--------------------------------------------
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChH--------------------------------------------
Confidence 999999987789999999889888888876543211
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHH
Q 000145 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGL 440 (2054)
Q Consensus 361 iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~L 440 (2054)
..+..+..+|.+++.++.++..+.+.++++.|+.+
T Consensus 201 ---------------------------------------------~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~l 235 (529)
T 1jdh_A 201 ---------------------------------------------KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 235 (529)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTT
T ss_pred ---------------------------------------------HHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 13334455566666666667777888999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCch
Q 000145 441 ITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPP 520 (2054)
Q Consensus 441 L~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~ 520 (2054)
+.+++++++..++.+|.+++...+. . ....+++|.|+++++++++.++..++++|++|+.++++++..+.+.|+++.
T Consensus 236 l~~~~~~~~~~a~~~L~~l~~~~~~-~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~ 312 (529)
T 1jdh_A 236 LTDPSQRLVQNCLWTLRNLSDAATK-Q--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 312 (529)
T ss_dssp TTSSCHHHHHHHHHHHHHHHTTCTT-C--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHH
T ss_pred HhCCChHHHHHHHHHHHHHhcCChh-h--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Confidence 9999999999999999999987432 2 223588999999999999999999999999999977788999999999999
Q ss_pred HhhhhhcC--CHHHHHHHHHHHHHHhcCChh---HHHHHHHcCChHHHHHhhccCC-hhHHHHHHHHHHHHHHhhchhhH
Q 000145 521 LVQLLEAG--SQKAREVAAHVLWILCCHSED---IRACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKLIRAADSATI 594 (2054)
Q Consensus 521 LV~LL~s~--s~~Vre~AA~aL~nLa~~sd~---~r~~I~e~GaI~aLV~LLkS~~-~evq~~AA~AL~nLs~~~e~~~I 594 (2054)
|+++|.+. ++++++.|+++|+||+.++.. .+..+.+.|+++.|+.++++++ +.++..++++|.|++.+.+
T Consensus 313 L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~---- 388 (529)
T 1jdh_A 313 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA---- 388 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh----
Confidence 99999763 489999999999999875432 5778888999999999999877 5899999999999975421
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhh
Q 000145 595 NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGS 674 (2054)
Q Consensus 595 p~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~ 674 (2054)
. +..+.+.|+++.|+.+++++++++|..|+|++.|.+..
T Consensus 389 -------------~---------------------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~------- 427 (529)
T 1jdh_A 389 -------------N---------------------HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV------- 427 (529)
T ss_dssp -------------G---------------------HHHHHHTTHHHHHHHHHHHHHHHHC-----------CB-------
T ss_pred -------------h---------------------hHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhh-------
Confidence 0 01234567899999999999999999999999984321
Q ss_pred hhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC
Q 000145 675 LATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD 754 (2054)
Q Consensus 675 Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~ 754 (2054)
.|+ ..+.++..++.+|++|+. .. .++..+.+.|++++|+.++.+++++++..++++|++|+.+
T Consensus 428 ---~~~----------~~~~i~~~~~~al~~L~~--~~--~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 428 ---EGV----------RMEEIVEGCTGALHILAR--DV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp ---TTB----------CHHHHHHHHHHHHHHHTT--SH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred ---ccc----------cHHHHHHHHHHHHHHHhc--Cc--hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 111 124556778999999986 33 6778899999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 755 ~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
++.+..+.+.|+++.|.+++.+.++++++.|.++|.+|
T Consensus 491 ~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 491 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999987
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=395.22 Aligned_cols=563 Identities=19% Similarity=0.183 Sum_probs=443.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHH
Q 000145 40 TVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRL 119 (2054)
Q Consensus 40 ~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~ 119 (2054)
.+..+++.|...+ ...+..+++.|... .+..+. .|++|.|+.+|+++++.+|.+|+.+|.+|+.+.+++.
T Consensus 116 ~i~~lv~~L~~~~--~~~r~~a~~~l~~~------~~~~i~--~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 116 AHPTNVQRLAEPS--QMLKHAVVNLINYQ------DDAELA--TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp ----------CCS--CHHHHHHHHHHHHH------HHHHHH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cHHHHHHHhcCcc--HHHHHHHHHHHHhh------hHHHHH--hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 3567777786653 34455555555432 223343 5899999999999999999999999999999888888
Q ss_pred HHHhc-CChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHH
Q 000145 120 KVLLG-GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGA 197 (2054)
Q Consensus 120 ~v~~~-GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~a 197 (2054)
.+... |+++.|+++|.+ ++++++..|+.+|.+|+. +..++..+.+.|+|+.|+++|.+++ ..++..|+++
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-----~~~~~~~i~~~g~I~~Lv~lL~~~~---~~v~~~A~~a 257 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-----HREGLLAIFKSGGIPALVNMLGSPV---DSVLFHAITT 257 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-----SHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-----CchhHHHHHHcCCHHHHHHHHcCCC---HHHHHHHHHH
Confidence 77755 899999999987 599999999999999996 4567889999999999999998764 6789999999
Q ss_pred HHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHH
Q 000145 198 LRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRA 277 (2054)
Q Consensus 198 L~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~ 277 (2054)
|.|+|...+.....+.+.|+++.|+.+|.+.+..++..++.+|.+++..+++.+..+.+.|+++.|+.+++.+.....+.
T Consensus 258 L~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~ 337 (780)
T 2z6g_A 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 337 (780)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 99999988777788889999999999999999999999999999999777777788888999999999998666666777
Q ss_pred HHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCc
Q 000145 278 SAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRL 357 (2054)
Q Consensus 278 ~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~ 357 (2054)
.+..+|.+++. ++..+..+.+.|+++.|+.++.+++.. ++..+..+|.+++.
T Consensus 338 ~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~---------~~~~a~~~L~~L~~------------------ 389 (780)
T 2z6g_A 338 TTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---------LVQNCLWTLRNLSD------------------ 389 (780)
T ss_dssp HHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHH---------HHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchH---------HHHHHHHHHHHHhc------------------
Confidence 88999999998 578888999999999999988765432 34455555555432
Q ss_pred hhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHH
Q 000145 358 AAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVL 437 (2054)
Q Consensus 358 ~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~L 437 (2054)
.... .....++++.|
T Consensus 390 ---------------------------------------------------------------~~~~--~~~~~~~i~~L 404 (780)
T 2z6g_A 390 ---------------------------------------------------------------AATK--QEGMEGLLGTL 404 (780)
T ss_dssp ---------------------------------------------------------------TCTT--CSCCHHHHHHH
T ss_pred ---------------------------------------------------------------cchh--hhhhhhHHHHH
Confidence 1000 00112466778
Q ss_pred HHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCC-C-hhhhHHHHHHHHHHhhhccc---hhhHH
Q 000145 438 IGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS-S-EQHQEYAVQLIAILTEQVDD---SKWAI 512 (2054)
Q Consensus 438 I~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~-d-~~Vr~~Aa~aL~nLs~~s~e---~r~~I 512 (2054)
+.++.+.+.+++..++.+|.+++..+++.+..+.+.|+++.|++++... + +.++..|+++|+||+..+.+ .+..+
T Consensus 405 v~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v 484 (780)
T 2z6g_A 405 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAV 484 (780)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 8888888899999999999999998778888899999999999999763 3 38999999999999875444 35678
Q ss_pred HhhCCCchHhhhhhcCC-HHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhch
Q 000145 513 TAAGGIPPLVQLLEAGS-QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~s~s-~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~ 591 (2054)
...|+++.|+++|.+++ +.++..++++|+||+.+ +..+..+.+.|+++.|+.++++++++++..++|++.|-.
T Consensus 485 ~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~----- 558 (780)
T 2z6g_A 485 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ----- 558 (780)
T ss_dssp HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------C-----
T ss_pred HHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccch-----
Confidence 88999999999999886 59999999999999984 556678888999999999999888888887777655410
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhh
Q 000145 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2054)
Q Consensus 592 ~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~ 671 (2054)
+ ..| ...+++++.++.+|.+|+. ++++
T Consensus 559 ---------~---------------------------------~~~----------~~~~~v~~~a~~aL~~La~-~~~~ 585 (780)
T 2z6g_A 559 ---------F---------------------------------VEG----------VRMEEIVEACTGALHILAR-DIHN 585 (780)
T ss_dssp ---------C---------------------------------STT----------CCHHHHHHHHHHHHHHHTT-SHHH
T ss_pred ---------h---------------------------------hcc----------cChHHHHHHHHHHHHHHhc-Chhh
Confidence 0 000 0235678889999999987 7888
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000145 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANL 751 (2054)
Q Consensus 672 r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NL 751 (2054)
+..+.+.|++++|+++|.++++.++..|+.+|.+++. .. ..+..+.+.|++++|++++++.+.+++..|+++|.++
T Consensus 586 ~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~--~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l 661 (780)
T 2z6g_A 586 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DK--EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 661 (780)
T ss_dssp HHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT--SH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc--CH--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999985 23 6788899999999999999999999999999999999
Q ss_pred hCChH--HHHHHHhcCcHHHHHHHHcCCCHH
Q 000145 752 LSDPD--IAAEVLLEDVVSALTRVLAEGTSE 780 (2054)
Q Consensus 752 a~~~e--~r~~Iv~~g~I~~LV~LL~s~~~e 780 (2054)
+.++. .+..+ +++.+..++.+++..
T Consensus 662 ~~~~~~~~~~~l----~~~ll~~l~~~~~~~ 688 (780)
T 2z6g_A 662 SEDKPQDYKKRL----SVELTSSLFRTEPMT 688 (780)
T ss_dssp HTTSCTTHHHHH----HHHHHHHC-------
T ss_pred HcCChHhhhccc----cHHHHHHHHhCCCcc
Confidence 98654 22221 666667777665543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=385.10 Aligned_cols=528 Identities=20% Similarity=0.195 Sum_probs=435.6
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhc-CChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCC
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDD 160 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~-GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~ 160 (2054)
.|+++.|+.+|+++++.++..|+.+|.+++.+.+++..+... |+++.|+++|.+ ++++++..|+.+|.+|+. +
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-----~ 87 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-----H 87 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-----S
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-----C
Confidence 689999999999999999999999999999988888777755 889999999987 599999999999999996 4
Q ss_pred hhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHH
Q 000145 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2054)
Q Consensus 161 ~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL 240 (2054)
..++..+++.|+++.|+++|.+++ ..++..++++|.|++...+.....+.+.|+++.|+.+|.++++.++..++.+|
T Consensus 88 ~~~~~~i~~~g~i~~Lv~lL~~~~---~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 164 (644)
T 2z6h_A 88 REGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 164 (644)
T ss_dssp HHHHHHHHTTTHHHHHHHHTTCSS---HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCHHHHHHHHhCCC---HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHH
Confidence 568999999999999999998754 67899999999999998777778888999999999999999999999999999
Q ss_pred HHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000145 241 ARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2054)
Q Consensus 241 ~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~ 320 (2054)
.+++..+++.+..+.+.|+++.|+.++++......+..+..+|.+++. ++..|..+.+.|+++.|++++.+++..
T Consensus 165 ~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~---- 239 (644)
T 2z6h_A 165 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 239 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHH----
T ss_pred HHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHH----
Confidence 999977777788888999999999999866667788899999999998 588899999999999999988765433
Q ss_pred hhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcC
Q 000145 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK 400 (2054)
Q Consensus 321 ~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk 400 (2054)
+++.++.+|.+++.
T Consensus 240 -----~~~~a~~~L~nL~~------------------------------------------------------------- 253 (644)
T 2z6h_A 240 -----LVQNCLWTLRNLSD------------------------------------------------------------- 253 (644)
T ss_dssp -----HHHHHHHHHHHHGG-------------------------------------------------------------
T ss_pred -----HHHHHHHHHHHHhh-------------------------------------------------------------
Confidence 45556666655542
Q ss_pred CCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHH
Q 000145 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2054)
Q Consensus 401 ~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV 480 (2054)
.... .....++++.|+.++.+.+.+++..++.+|.+++..+++++..+.+.|+++.|+
T Consensus 254 --------------------~~~~--~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv 311 (644)
T 2z6h_A 254 --------------------AATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 311 (644)
T ss_dssp --------------------GCTT--CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred --------------------cchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHH
Confidence 1000 000124677788888888899999999999999988778888899999999999
Q ss_pred hhhcCCC--hhhhHHHHHHHHHHhhhccc---hhhHHHhhCCCchHhhhhhcCC-HHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 481 SLLGLSS--EQHQEYAVQLIAILTEQVDD---SKWAITAAGGIPPLVQLLEAGS-QKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 481 ~LL~s~d--~~Vr~~Aa~aL~nLs~~s~e---~r~~I~~aGaIp~LV~LL~s~s-~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
+++...+ +.++..++++|+||+..+++ .+..+...|+++.|+++|.+++ +.++..++++|+||+.+ +..+..+
T Consensus 312 ~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i 390 (644)
T 2z6h_A 312 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPL 390 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHH
T ss_pred HHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHH
Confidence 9998643 68999999999999875442 4556778899999999999874 79999999999999985 4456778
Q ss_pred HHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhh
Q 000145 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634 (2054)
Q Consensus 555 ~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~ 634 (2054)
.+.|+++.|+.+++++++++|..++|++.|-..
T Consensus 391 ~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~----------------------------------------------- 423 (644)
T 2z6h_A 391 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF----------------------------------------------- 423 (644)
T ss_dssp HHTTHHHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred HHcCCHHHHHHHHhccchhhhhHhhhccccchh-----------------------------------------------
Confidence 889999999999999888888888886655100
Q ss_pred cccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCccc
Q 000145 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2054)
Q Consensus 635 ~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d 714 (2054)
..|+ .++++++.++.+|.+|+. ++.++..+.+.|++++|++++.++++.++..|+.+|.+++. ..
T Consensus 424 ~~~~----------~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~--~~-- 488 (644)
T 2z6h_A 424 VEGV----------RMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DK-- 488 (644)
T ss_dssp CCSS----------CHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SH--
T ss_pred cccc----------cHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc--CH--
Confidence 0000 245678889999999998 67888899999999999999999999999999999999985 22
Q ss_pred chhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHH--HHHHHhcCcHHHHHHHHcCCC
Q 000145 715 TNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDI--AAEVLLEDVVSALTRVLAEGT 778 (2054)
Q Consensus 715 ~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~--r~~Iv~~g~I~~LV~LL~s~~ 778 (2054)
..+..+.+.|++++|.+++++.+++++..|+.+|.+++.+... +..+ +++.+..++.+++
T Consensus 489 ~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~----~~~il~~~~~~~~ 550 (644)
T 2z6h_A 489 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL----SVELTSSLFRTEP 550 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSCHHHHHHH----HHHHHHHHSCCSC
T ss_pred HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccCcHhhhccc----chHHHHHHHhCCC
Confidence 5777889999999999999999999999999999999876542 1221 3555666666554
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=377.07 Aligned_cols=510 Identities=18% Similarity=0.187 Sum_probs=423.8
Q ss_pred HhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHc-CcHHHHHHhhCCCCCCChhHHHHHHHHHHH
Q 000145 122 LLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-GVVPTLWDQLNPKNKQDNVVQGFVTGALRN 200 (2054)
Q Consensus 122 ~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~a-G~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~n 200 (2054)
...|+++.|+++|+++++.+|..|+.+|.+++.+ ..++..++.. |+++.|++.|.++. +..++..++.+|.+
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~-----~~~~~~i~~~~~~i~~Lv~~L~~~~--~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-----EASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHN 83 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-----TTHHHHHTTCHHHHHHHHHHHHSCC--CHHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCC-----ChhHHHHHhccChHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 4669999999999999999999999999999973 3356666654 89999999998653 45689999999999
Q ss_pred HhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHH
Q 000145 201 LCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2054)
Q Consensus 201 L~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa 280 (2054)
++...+ ....+.+.|+++.|+.+|.++++.++..++++|.+++..++..+..+.+.|+++.|+.++++ .+..++..+.
T Consensus 84 Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~~~~~a~ 161 (644)
T 2z6h_A 84 LSHHRE-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLAITT 161 (644)
T ss_dssp HTTSHH-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHH
T ss_pred HhcChh-hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc-CCHHHHHHHH
Confidence 999866 55778888999999999999999999999999999997776777778889999999999985 4667888888
Q ss_pred HHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhh
Q 000145 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2054)
Q Consensus 281 ~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~ 360 (2054)
.+|.+++..+++.+..+.+.|+++.|++++.+++.
T Consensus 162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~--------------------------------------------- 196 (644)
T 2z6h_A 162 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTY--------------------------------------------- 196 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCC---------------------------------------------
T ss_pred HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCCh---------------------------------------------
Confidence 99999998678899999988888888887754321
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHH
Q 000145 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGL 440 (2054)
Q Consensus 361 iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~L 440 (2054)
+..+..++.+|.+++.++.++..+.+.++++.|+.+
T Consensus 197 --------------------------------------------~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~l 232 (644)
T 2z6h_A 197 --------------------------------------------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLH 232 (644)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTT
T ss_pred --------------------------------------------HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHH
Confidence 113445556666666666677778888999999999
Q ss_pred hccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCch
Q 000145 441 ITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPP 520 (2054)
Q Consensus 441 L~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~ 520 (2054)
+...+..++..++.+|.+++..... .....++++.|++++++++..++..++++|++|+..+++++..+.+.|+++.
T Consensus 233 l~~~~~~~~~~a~~~L~nL~~~~~~---~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~ 309 (644)
T 2z6h_A 233 LTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEA 309 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCTT---CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhcchh---hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHH
Confidence 9999999999999999999976432 1233588999999999999999999999999999977788999999999999
Q ss_pred HhhhhhcC-C-HHHHHHHHHHHHHHhcCCh---hHHHHHHHcCChHHHHHhhccCC-hhHHHHHHHHHHHHHHhhchhhH
Q 000145 521 LVQLLEAG-S-QKAREVAAHVLWILCCHSE---DIRACVESAGAVPAFLWLLKSGG-PKGQDASAMALTKLIRAADSATI 594 (2054)
Q Consensus 521 LV~LL~s~-s-~~Vre~AA~aL~nLa~~sd---~~r~~I~e~GaI~aLV~LLkS~~-~evq~~AA~AL~nLs~~~e~~~I 594 (2054)
|+++|.+. + +.++..|+++|+||+.+.. ..+..+.+.|+++.|+.+|++++ +.++..++++|.|++.+.+
T Consensus 310 Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~---- 385 (644)
T 2z6h_A 310 LVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA---- 385 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG----
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH----
Confidence 99999874 3 8999999999999987433 35666778999999999999875 6899999999999975421
Q ss_pred HHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHH--HhhcChhhh
Q 000145 595 NQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD--LFSMRQDIC 672 (2054)
Q Consensus 595 p~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALan--Las~~~e~r 672 (2054)
.+ ..+.+.|+++.|+.++++++.++|..|+|++.+ +..
T Consensus 386 -------------~~---------------------~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~------ 425 (644)
T 2z6h_A 386 -------------NH---------------------APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE------ 425 (644)
T ss_dssp -------------GH---------------------HHHHHTTHHHHHHHHHHHHHHHHTTC----------CC------
T ss_pred -------------HH---------------------HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcc------
Confidence 01 123456789999999999999999999998776 221
Q ss_pred hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 673 GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 673 ~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
| ..++.++..++.+|++|+. .. .++..+.+.|++++|+.+|.+.+++++..|+++|+|++
T Consensus 426 ------~----------~~~~~v~~~a~~aL~~La~--~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~ 485 (644)
T 2z6h_A 426 ------G----------VRMEEIVEGCTGALHILAR--DV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 485 (644)
T ss_dssp ------S----------SCHHHHHHHHHHHHHHHTT--SH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred ------c----------ccHHHHHHHHHHHHHHHhc--CH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 1 1245788899999999986 33 67778889999999999999999999999999999999
Q ss_pred CChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 753 SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 753 ~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
.+++.+..+.+.|+++.|+.++.+.++++|..|+++|.++..+.
T Consensus 486 ~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 486 QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred cCHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999865
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=343.67 Aligned_cols=415 Identities=16% Similarity=0.167 Sum_probs=347.1
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhccc-CccchhhhhccccHHHHHhhhcC-CChhhhHHHHHHHHHHhhhccchhh
Q 000145 433 AKKVLIGLITMATADVREYLILSLTKLCRR-EVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKW 510 (2054)
Q Consensus 433 ~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~-s~e~r~~Ive~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLs~~s~e~r~ 510 (2054)
.++-++..+.+++.+.|..|+..++++... .....+.+++.|+||.|+++|+. +++.+|..|+++|+||+.++++++.
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 478899999999999999999999986543 23345778899999999999975 4578999999999999998889999
Q ss_pred HHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh-----hHHHHHHHHHHHH
Q 000145 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-----KGQDASAMALTKL 585 (2054)
Q Consensus 511 ~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~-----evq~~AA~AL~nL 585 (2054)
.+++.|++|.|+++|.++++++++.|+++|+||+.+++..|..+.+.|++++|+.++++.+. ..++.++++|.++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987653 4577888888888
Q ss_pred HHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHh
Q 000145 586 IRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLF 665 (2054)
Q Consensus 586 s~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLa 665 (2054)
+..... .... ....++++.|+.++++++++++..++++|.+|+
T Consensus 218 ~~~~~~-------------~~~~------------------------~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~ 260 (510)
T 3ul1_B 218 CRNKNP-------------APPL------------------------DAVEQILPTLVRLLHHNDPEVLADSCWAISYLT 260 (510)
T ss_dssp HCCCSS-------------CCCH------------------------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hhcccc-------------hhHH------------------------HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 754210 0000 012346899999999999999999999999999
Q ss_pred hcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHH
Q 000145 666 SMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAV 745 (2054)
Q Consensus 666 s~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al 745 (2054)
....+....+.+.|+++.|+.++.++++.++..++++|+|++.+. +..+..+.+.|++++|+.+|.+++.+++..|+
T Consensus 261 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~---~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~ 337 (510)
T 3ul1_B 261 DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT---DEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337 (510)
T ss_dssp SSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred hchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC---HHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence 877777888889999999999999999999999999999998643 26777899999999999999999999999999
Q ss_pred HHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCC
Q 000145 746 AALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDM 824 (2054)
Q Consensus 746 ~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~ 824 (2054)
++|+|++. ++..+..+.+.|+++.|+.++.+++.++|..|+|+|+|++.+.. ......+.+.|++++|+.+|++.+
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~--~~~~~~L~~~g~i~~L~~LL~~~d- 414 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT--VEQIVYLVHCGIIEPLMNLLSAKD- 414 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCC--HHHHHHHHHTTCHHHHHHGGGCSC-
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCC--HHHHHHHHHCCCHHHHHHHhcCCC-
Confidence 99999986 56677788899999999999999999999999999999998642 344556677899999999998654
Q ss_pred CchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccC
Q 000145 825 NGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 825 ~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
......++++|.++....+..... ..+....+..+.++.|..++.++++.++.+|..+|.+++...
T Consensus 415 -~~i~~~~L~aL~nil~~~~~~~~~-~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 480 (510)
T 3ul1_B 415 -TKIIQVILDAISNIFQAAEKLGET-EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480 (510)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred -HHHHHHHHHHHHHHHHHhHhccch-HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 456889999999887522111111 112222345678999999999999999999999999998743
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-31 Score=338.05 Aligned_cols=416 Identities=16% Similarity=0.158 Sum_probs=347.2
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcc-cCccchhhhhccccHHHHHhhhcC-CChhhhHHHHHHHHHHhhhccchh
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCR-REVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~-~s~e~r~~Ive~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
..++.++..+.+++++.|..++..++++-. ........+++.|+||.|+++|+. +++.++..|+++|+|++.++++++
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 357788999999999999999999988643 333445778899999999999974 567899999999999999888888
Q ss_pred hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh-----hHHHHHHHHHHH
Q 000145 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-----KGQDASAMALTK 584 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~-----evq~~AA~AL~n 584 (2054)
..+.+.|++|.|+.+|.++++++++.|+++|+||+.+++..|..+.+.|++++|+.++.+.+. ..++.++++|.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999987553 467788888888
Q ss_pred HHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHH
Q 000145 585 LIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664 (2054)
Q Consensus 585 Ls~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanL 664 (2054)
++..... .... ....++++.|+.++++++++++..++++|.++
T Consensus 236 l~~~~~~-------------~~~~------------------------~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l 278 (529)
T 3tpo_A 236 LCRNKNP-------------APPL------------------------DAVEQILPTLVRLLHHNDPEVLADSCWAISYL 278 (529)
T ss_dssp HHCCCTT-------------CCCH------------------------HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHhcccc-------------hhhH------------------------HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 8754210 0000 01234689999999999999999999999999
Q ss_pred hhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHH
Q 000145 665 FSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETA 744 (2054)
Q Consensus 665 as~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~A 744 (2054)
+....+....+...|+++.|+.++.+.++.++..|+++|+|++.+. +..+..+.+.|++++|+.+|.+++++++.+|
T Consensus 279 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~---~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a 355 (529)
T 3tpo_A 279 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT---DEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 355 (529)
T ss_dssp HSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred hhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc---hHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence 9977788888899999999999999999999999999999998643 2677789999999999999999999999999
Q ss_pred HHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCC
Q 000145 745 VAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMD 823 (2054)
Q Consensus 745 l~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~ 823 (2054)
+++|+|++. ++..+..+.+.|++++|+.++.+++.++|..|+|+|+|++.+.. ......+...|++++|+++|.+.+
T Consensus 356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~--~~~~~~l~~~g~i~~L~~LL~~~d 433 (529)
T 3tpo_A 356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT--VEQIVYLVHCGIIEPLMNLLSAKD 433 (529)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC--HHHHHHHHHCcCHHHHHHHhcCCC
Confidence 999999987 56667788899999999999999999999999999999998642 344556677899999999998654
Q ss_pred CCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccC
Q 000145 824 MNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 824 ~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
......++.+|.++....+..... +.+....+..++++.|..++.++++.++.+|..+|.+++...
T Consensus 434 --~~i~~~~L~aL~nil~~~~~~~~~-~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~ 499 (529)
T 3tpo_A 434 --TKIIQVILDAISNIFQAAEKLGET-EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 499 (529)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred --HHHHHHHHHHHHHHHHHhHhccCh-HHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 456888999999886422111110 112222345678999999999999999999999999998743
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-30 Score=325.48 Aligned_cols=397 Identities=14% Similarity=0.152 Sum_probs=343.7
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcChhh--hHHHhhcchHHHHHHHhccC-CHHHHHHHHHHHHHhcccCccchhh
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFL--SQWVSHAEAKKVLIGLITMA-TADVREYLILSLTKLCRREVGIWEA 469 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~--~~~L~~~g~I~~LI~LL~ss-d~evq~~Aa~AL~~Ls~~s~e~r~~ 469 (2054)
+-++..+.+.+.+ .|..++.++..+.....+ .+.+.+.|+++.|+.+|..+ ++++|..|+++|.+++..+++.+..
T Consensus 60 ~~~v~~l~s~d~~-~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 60 EDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHTSSCHH-HHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5567777777765 889999999988543322 35677889999999999754 5899999999999999988889999
Q ss_pred hhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCC-----HHHHHHHHHHHHHHh
Q 000145 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGS-----QKAREVAAHVLWILC 544 (2054)
Q Consensus 470 Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s-----~~Vre~AA~aL~nLa 544 (2054)
+++.|+||.|+++|++++..+++.|+++|+||+.++++.|..+.+.|++++|+.+|.+++ ...++.++++|.+++
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999977889999999999999999997653 467889999999999
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHH
Q 000145 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVL 616 (2054)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL 616 (2054)
.+.+.........++++.|+.++++++++++..++++|.+++... +.++++.|++++.+.+..++..+.+++
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL 298 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 298 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence 866554444445788999999999999999999999999998653 357899999999999999999999999
Q ss_pred HHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000145 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2054)
Q Consensus 617 ~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr 696 (2054)
++++.. .+.....+.+.|+++.|+.+++++++++++.|+++|.||+.++++.+..+.+.|+++.|+.++++++..+|
T Consensus 299 ~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 375 (510)
T 3ul1_B 299 GNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 375 (510)
T ss_dssp HHHTTS---CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHhhcC---CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHH
Confidence 998643 23344556788999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-------ChHHHHHHHhcCcHHH
Q 000145 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-------DPDIAAEVLLEDVVSA 769 (2054)
Q Consensus 697 ~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-------~~e~r~~Iv~~g~I~~ 769 (2054)
..|+++|.|++..... .++..+.+.|++++|+++|++.+++++..++++|.|+.. ....+..+.+.|++..
T Consensus 376 ~~Aa~aL~Nl~~~~~~--~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 453 (510)
T 3ul1_B 376 KEAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 453 (510)
T ss_dssp HHHHHHHHHHHHHCCH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHccCCH--HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHH
Confidence 9999999999873333 567789999999999999999999999999999999953 1234556788999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 770 LTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 770 LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
|..+..+.+.++++.|...|.+....
T Consensus 454 ie~Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 454 IEALQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999887653
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=315.90 Aligned_cols=403 Identities=15% Similarity=0.126 Sum_probs=350.5
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcccCc-cchhhhhccccHHHHHhhhcCCC-hhhhHHHHHHHHHHhhhccchh
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCRREV-GIWEAIGKREGIQLLISLLGLSS-EQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~-e~r~~Ive~ggIp~LV~LL~s~d-~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
..++.++.++.++++++|..|+.+|.++..... .....+++.|++|.|++++++++ +.++..|+++|++++..+++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 468899999999999999999999999966544 56777888999999999999887 8999999999999999778899
Q ss_pred hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhh-ccCChhHHHHHHHHHHHHHHh
Q 000145 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL-KSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LL-kS~~~evq~~AA~AL~nLs~~ 588 (2054)
..+.+.|+++.|+.+|.++++.+++.|+++|++|+.+++..+..+.+.|+++.|+.++ .+.++.++..++++|.+++..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998888899999999999999999 678899999999999999976
Q ss_pred h-------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHH
Q 000145 589 A-------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVL 661 (2054)
Q Consensus 589 ~-------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~AL 661 (2054)
. ..++++.|++++.+.++.++..++++|++++.. .+.....+.+.|+++.|+.+++++++.++..|+++|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L 310 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTV 310 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHH
Confidence 3 146899999999999999999999999998743 222233456789999999999999999999999999
Q ss_pred HHHhhcChhhhhhhhhCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHH
Q 000145 662 ADLFSMRQDICGSLATDEIVNPCMRLLTSN-TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2054)
Q Consensus 662 anLas~~~e~r~~Iv~~g~V~~Lv~LL~dg-s~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~V 740 (2054)
.+|+.+++.....+.+.|+++.|+.+|.++ ++.++..|+++|+|++.+.+ .....+.+.|++++|+.+|.+.+.++
T Consensus 311 ~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~---~~~~~~~~~~~i~~L~~lL~~~~~~v 387 (528)
T 4b8j_A 311 GNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK---DQIQAVINAGIIGPLVNLLQTAEFDI 387 (528)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH---HHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCH---HHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 999998888888999999999999999998 99999999999999997322 46667888999999999999999999
Q ss_pred HHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCC--------chhHhhhhhhhh
Q 000145 741 AETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--------GDVLKGNAQCRF 810 (2054)
Q Consensus 741 re~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~--------~e~i~~~i~~~g 810 (2054)
+..|+++|+|++. +++.+..+.+.|++++|+.++.+.+++++..++++|.+|+...+. ...+...+...+
T Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 467 (528)
T 4b8j_A 388 KKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAE 467 (528)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCC
Confidence 9999999999986 477888899999999999999999999999999999999875321 112455566688
Q ss_pred hHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000145 811 VVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2054)
Q Consensus 811 ~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~ 842 (2054)
++.++..+..+.+ ......|...+..+...
T Consensus 468 ~~~~l~~L~~~~~--~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 468 GLEKIENLQSHDN--NEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHGGGCSS--HHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHcCCC--HHHHHHHHHHHHHHCCC
Confidence 8999999876543 44577888888776643
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-29 Score=320.00 Aligned_cols=396 Identities=14% Similarity=0.150 Sum_probs=343.0
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcCh--hhhHHHhhcchHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhh
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNI--FLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEA 469 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~--~~~~~L~~~g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~ 469 (2054)
+-++..+.+.+.+ .+..++..+..+.... .....+.+.|+++.|+.++.. .++++|..|+++|.+++..+.+....
T Consensus 79 ~~lv~~l~s~d~~-~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~ 157 (529)
T 3tpo_A 79 EDIVKGINSNNLE-SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 157 (529)
T ss_dssp HHHHHHHTSSCHH-HHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5566677776654 8889999998875433 224567888999999999975 45889999999999999988888899
Q ss_pred hhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC-----CHHHHHHHHHHHHHHh
Q 000145 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG-----SQKAREVAAHVLWILC 544 (2054)
Q Consensus 470 Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~-----s~~Vre~AA~aL~nLa 544 (2054)
+++.|+||.|+.++.+++..+++.|+++|+||+.+++++|..+.+.|++++|+.+|..+ ....++.++++|.+++
T Consensus 158 vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 237 (529)
T 3tpo_A 158 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 237 (529)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997889999999999999999999765 3467889999999999
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHH
Q 000145 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVL 616 (2054)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL 616 (2054)
.+.+.........+++|.|+.++++++++++..++|+|.+++... +.++++.|+++|.+.+..++..+..++
T Consensus 238 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 317 (529)
T 3tpo_A 238 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 317 (529)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred hcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHH
Confidence 876555555455788999999999999999999999999998653 357899999999999999999999999
Q ss_pred HHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHH
Q 000145 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVA 696 (2054)
Q Consensus 617 ~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr 696 (2054)
++++.. .+.....+.+.|+++.|+.++++++++++..|+++|.||+.++++.+..+.+.|+++.|+.++.+++..++
T Consensus 318 ~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 318 GNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHTTS---CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHcc---chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 998643 23344556788999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-------ChHHHHHHHhcCcHHH
Q 000145 697 TQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-------DPDIAAEVLLEDVVSA 769 (2054)
Q Consensus 697 ~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-------~~e~r~~Iv~~g~I~~ 769 (2054)
..|+++|+|++.+... .+...+++.|++++|+++|++.+++++..++.+|.|+.. ....+..+.+.|++..
T Consensus 395 ~~A~~aL~nl~~~~~~--~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 472 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTV--EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 472 (529)
T ss_dssp HHHHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHcCCCH--HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH
Confidence 9999999999873332 566788999999999999999999999999999999953 2234556788999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhh
Q 000145 770 LTRVLAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 770 LV~LL~s~~~evr~~Aa~AL~nL~~ 794 (2054)
|..+..+.+.++++.|..+|.+...
T Consensus 473 ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 473 IEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999987754
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=322.57 Aligned_cols=361 Identities=17% Similarity=0.196 Sum_probs=303.3
Q ss_pred hhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhh-ccc
Q 000145 429 SHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ-VDD 507 (2054)
Q Consensus 429 ~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~-s~e 507 (2054)
+..+.++.|+.+|.++++++|..|+.+|.+++..+.+++..|++.|+||.|+++|++++..+|+.|+++|+||+.+ +++
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 3457899999999999999999999999999998789999999999999999999999999999999999999985 588
Q ss_pred hhhHHHhhCCCchHhhhhhc-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhc------------------
Q 000145 508 SKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK------------------ 568 (2054)
Q Consensus 508 ~r~~I~~aGaIp~LV~LL~s-~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLk------------------ 568 (2054)
++..|.+.|++++|+++|.+ ++.++++.++++|++|+. .+.++..+.+ ++++.|+.++.
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999998 588999999999999998 5667777774 67999999762
Q ss_pred cCChhHHHHHHHHHHHHHHhhc---------hhhHHHHHHHhcC------CCcchHHHHHHHHHHHHhhhcchH-----H
Q 000145 569 SGGPKGQDASAMALTKLIRAAD---------SATINQLLALLLG------DSPSSKAHVIKVLGHVLTMALQED-----L 628 (2054)
Q Consensus 569 S~~~evq~~AA~AL~nLs~~~e---------~~~Ip~Lv~LL~~------~~~~V~~~a~~AL~~La~~~~~~d-----~ 628 (2054)
+.+++++++++++|.||+.+.+ .+.++.|+.+++. .+....+.+..+|++|+....... .
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 2357999999999999986531 3567899999874 345677889999999875421100 0
Q ss_pred H-----------------HhhhhcccchHHHHHHhcc-CCHHHHHHHHHHHHHHhhcC----hhhhhhhhhCCCHHHHHH
Q 000145 629 V-----------------QKGSAANKGLRSLVQVLNS-SNEENQEYAASVLADLFSMR----QDICGSLATDEIVNPCMR 686 (2054)
Q Consensus 629 ~-----------------~~~l~~~GaI~~LV~LLks-~s~evre~Aa~ALanLas~~----~e~r~~Iv~~g~V~~Lv~ 686 (2054)
. ...+...++++.|+.+++. .++++++.|+++|.||+.++ ..++..+.+.++++.|++
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~ 362 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD 362 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence 0 0112234567788999964 58999999999999998754 234455566799999999
Q ss_pred HhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcC--------CHHHHHHHHHHHHHhhC-ChHH
Q 000145 687 LLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS--------SIDAAETAVAALANLLS-DPDI 757 (2054)
Q Consensus 687 LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~--------d~~Vre~Al~AL~NLa~-~~e~ 757 (2054)
+|+++++.+++.|+++|.||+.. . .++..+ ..|++++|+.+|.+. +.+++..|+++|+||+. +++.
T Consensus 363 LL~s~~~~v~~~A~~aL~nLs~~--~--~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~ 437 (584)
T 3l6x_A 363 LLTNEHERVVKAASGALRNLAVD--A--RNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437 (584)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHTT--C--SCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHhCC--h--hHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999973 2 455444 789999999999876 46888899999999965 7889
Q ss_pred HHHHHhcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhhcC
Q 000145 758 AAEVLLEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 758 r~~Iv~~g~I~~LV~LL~s~--~~evr~~Aa~AL~nL~~~~ 796 (2054)
++.+.+.|++++|+.++.++ .+.+++.|+++|++|+.+.
T Consensus 438 ~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 99999999999999999986 8999999999999999864
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-29 Score=314.06 Aligned_cols=358 Identities=15% Similarity=0.177 Sum_probs=300.3
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHH
Q 000145 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2054)
Q Consensus 433 ~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I 512 (2054)
.++.++.++.++++++|..|+.+|.+++.+++..+..+.+.|+||.|+++|+++++.++..|+++|+||+.++++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 47889999999999999999999999998877778899999999999999999999999999999999999778999999
Q ss_pred HhhCCCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhh--------ccC--------ChhHH
Q 000145 513 TAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL--------KSG--------GPKGQ 575 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LL--------kS~--------~~evq 575 (2054)
.+.|++|+|+++|. ++++++++.++++|+||+.+ +..+..+.+ |+++.|+.++ +++ +++++
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 99999999999999 88999999999999999987 678888888 9999999999 332 45667
Q ss_pred HHHHHHHHHHHHhh-------ch-hhHHHHHHHhcC------CCcchHHHHHHHHHHHHhhhc----chH----------
Q 000145 576 DASAMALTKLIRAA-------DS-ATINQLLALLLG------DSPSSKAHVIKVLGHVLTMAL----QED---------- 627 (2054)
Q Consensus 576 ~~AA~AL~nLs~~~-------e~-~~Ip~Lv~LL~~------~~~~V~~~a~~AL~~La~~~~----~~d---------- 627 (2054)
+.++|+|.||+.++ +. ++++.|+++++. .+..+...+..+|++++.... ...
T Consensus 161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T 1xm9_A 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence 79999999999763 23 889999999985 345567777778888752110 000
Q ss_pred ---------------------------------HHHhhhhcccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChh---
Q 000145 628 ---------------------------------LVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQD--- 670 (2054)
Q Consensus 628 ---------------------------------~~~~~l~~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e--- 670 (2054)
...+.+...|+++.|+.+++++ ++++++.|+++|.||+.++.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~ 320 (457)
T 1xm9_A 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320 (457)
T ss_dssp -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred cccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchH
Confidence 0011244567889999999765 799999999999999975433
Q ss_pred -h-hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCC------HHHHH
Q 000145 671 -I-CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSS------IDAAE 742 (2054)
Q Consensus 671 -~-r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d------~~Vre 742 (2054)
+ +..+.+.|+++.|+++|+++++.+++.|+++|.|++. .. ..+. ++..|++++|+++|.+.+ .++..
T Consensus 321 ~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~--~~--~~~~-~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HP--LLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT--SG--GGHH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred HHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc--CH--HHHH-HHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 2 3334468999999999999999999999999999987 22 4444 445689999999999864 46888
Q ss_pred HHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhhcCC
Q 000145 743 TAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 743 ~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~-~~evr~~Aa~AL~nL~~~~~ 797 (2054)
.++++|+|+.. +++.+..+.+.|++++|++++.++ ++++++.|+++|.++..+++
T Consensus 396 ~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 396 SACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999999975 778888899999999999999999 99999999999999998754
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.3e-28 Score=308.56 Aligned_cols=404 Identities=14% Similarity=0.123 Sum_probs=348.2
Q ss_pred cchHHHHHHHhccCCHHHHHHHHHHHHHhcccC-ccchhhhhccccHHHHHhhhcCC-ChhhhHHHHHHHHHHhhhccch
Q 000145 431 AEAKKVLIGLITMATADVREYLILSLTKLCRRE-VGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDS 508 (2054)
Q Consensus 431 ~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s-~e~r~~Ive~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLs~~s~e~ 508 (2054)
.+.++.++..+.++++++|..|+.+|.++.... ......+++.|++|.|+++++++ ++.++..|+++|++++..+++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 357899999999999999999999999986542 34456777889999999999987 8899999999999999976778
Q ss_pred hhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 000145 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 509 r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
+..+...|+++.|+++|.++++.+++.|+++|++|+.+++..+..+.+.|+++.|+.++++.++.++..++++|.+++..
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence 88888999999999999999999999999999999998888899988999999999999999999999999999999965
Q ss_pred h--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHH
Q 000145 589 A--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASV 660 (2054)
Q Consensus 589 ~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~A 660 (2054)
. ..++++.|++++.++++.++..++++|++++... ++. ...+.+.|+++.|+.+++++++.++..|+++
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~--~~~-~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP--QEA-IQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC--HHH-HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC--HHH-HHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 3 1468999999999999999999999999987432 222 2334567899999999999999999999999
Q ss_pred HHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHH
Q 000145 661 LADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2054)
Q Consensus 661 LanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~V 740 (2054)
|.+++.++++....+.+.|+++.|+.+|.++++.++..|+++|++++.+.+ .....+.+.|++++|+.+|.+++.++
T Consensus 323 L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~---~~~~~~~~~~~l~~L~~lL~~~~~~v 399 (530)
T 1wa5_B 323 VGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT---EQIQAVIDANLIPPLVKLLEVAEYKT 399 (530)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTCHHHHHHHHHHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 999998778888888899999999999999999999999999999997432 45556778999999999999999999
Q ss_pred HHHHHHHHHHhhC--Ch--HHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCC--------chhHhhhhhh
Q 000145 741 AETAVAALANLLS--DP--DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV--------GDVLKGNAQC 808 (2054)
Q Consensus 741 re~Al~AL~NLa~--~~--e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~--------~e~i~~~i~~ 808 (2054)
+..|+++|+|++. .+ +....+.+.|++++|+.++.+.+++++..|+++|.+++...+. ...+...+..
T Consensus 400 ~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~ 479 (530)
T 1wa5_B 400 KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEK 479 (530)
T ss_dssp HHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHH
Confidence 9999999999976 34 6777888999999999999999999999999999999875321 1224445666
Q ss_pred hhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000145 809 RFVVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2054)
Q Consensus 809 ~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~ 842 (2054)
.|++.+|..++.+.+ ...+..|..++..+-..
T Consensus 480 ~g~~~~L~~L~~~~~--~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 480 AGGMEKIFNCQQNEN--DKIYEKAYKIIETYFGE 511 (530)
T ss_dssp TTHHHHHHGGGGCSC--HHHHHHHHHHHHHHSSS
T ss_pred cCcHHHHHHHHcCCC--HHHHHHHHHHHHHHCCc
Confidence 889999999886543 44577888888877643
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-28 Score=311.56 Aligned_cols=375 Identities=13% Similarity=0.130 Sum_probs=318.6
Q ss_pred CcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhc-ChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 000145 383 DEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG-NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCR 461 (2054)
Q Consensus 383 ~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~-n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~ 461 (2054)
...|+...+ +.|+.+|++.+. .+|..++.+|.+++. +..++..+.+.|+++.|+.+|.+++.++|..|+.+|.+++.
T Consensus 42 ~~~~~~~~i-~~LV~~L~s~~~-~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 42 PPNWRQPEL-PEVIAMLGFRLD-AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCCCCH-HHHHHHTTCSCH-HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred CCCcccccH-HHHHHHHCCCCH-HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 344555444 888999988765 499999999999974 77889999999999999999999999999999999999998
Q ss_pred c-CccchhhhhccccHHHHHhhhcC-CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh-------------
Q 000145 462 R-EVGIWEAIGKREGIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE------------- 526 (2054)
Q Consensus 462 ~-s~e~r~~Ive~ggIp~LV~LL~s-~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~------------- 526 (2054)
. +.+++..|++.||||.|+++|++ .+..+++.++.+|+||+. +++++..|.+ +++++|+++|.
T Consensus 120 ~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 120 GRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp SSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence 5 57899999999999999999997 577899999999999998 6889999985 57999999872
Q ss_pred -----cCCHHHHHHHHHHHHHHhcCChhHHHHHHHc-CChHHHHHhhcc------CChhHHHHHHHHHHHHHHhhc----
Q 000145 527 -----AGSQKAREVAAHVLWILCCHSEDIRACVESA-GAVPAFLWLLKS------GGPKGQDASAMALTKLIRAAD---- 590 (2054)
Q Consensus 527 -----s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~-GaI~aLV~LLkS------~~~evq~~AA~AL~nLs~~~e---- 590 (2054)
..+++++++|+++|+||+.++++.|..+.+. |.++.|+.++++ .+...+++|+++|.||+...+
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~ 277 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIP 277 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHST
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccccc
Confidence 2257999999999999999888878888875 556799999875 466789999999999986521
Q ss_pred -----------------------------hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhh-cchHHHHhhhhcccch
Q 000145 591 -----------------------------SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMA-LQEDLVQKGSAANKGL 639 (2054)
Q Consensus 591 -----------------------------~~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~-~~~d~~~~~l~~~GaI 639 (2054)
.++++.|+.+|+ ..++.+++.+++||.+|+... ......+..+.+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~gl 357 (584)
T 3l6x_A 278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKAL 357 (584)
T ss_dssp TCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHH
T ss_pred chhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcH
Confidence 134678899996 567889999999999997532 1223345556778899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--------CHHHHHHHHHHHHHhhCCCC
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--------TQMVATQSARALGALSRPTK 711 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg--------s~~vr~~AA~AL~nLs~s~~ 711 (2054)
+.|+.++.++++++++.|+++|.||+. ++.++..+ ..|+++.|+++|.++ ++.++..|+++|+||....+
T Consensus 358 p~Lv~LL~s~~~~v~~~A~~aL~nLs~-~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~ 435 (584)
T 3l6x_A 358 SAIADLLTNEHERVVKAASGALRNLAV-DARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL 435 (584)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHT-TCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhC-ChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999999998 56666655 789999999999876 46788999999999986433
Q ss_pred cccchhHHHHhcCChhhHHhhhhcC--CHHHHHHHHHHHHHhhCChHHHHHHHhcCc
Q 000145 712 TKTTNKMSYIAEGDVKPLIKLAKTS--SIDAAETAVAALANLLSDPDIAAEVLLEDV 766 (2054)
Q Consensus 712 ~~d~~r~~I~~~gaV~~Lv~LL~s~--d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~ 766 (2054)
.++..+.+.|++++|+.++.++ ++.+++.|+++|+||..+++.|..+.++|.
T Consensus 436 ---~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~ 489 (584)
T 3l6x_A 436 ---EAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGW 489 (584)
T ss_dssp ---HHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTC
T ss_pred ---HHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCC
Confidence 6888999999999999999986 899999999999999999999999988664
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=310.09 Aligned_cols=363 Identities=17% Similarity=0.143 Sum_probs=298.9
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccC------------CHHHHHHHHHHHHHhc
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA------------TADVREYLILSLTKLC 460 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ss------------d~evq~~Aa~AL~~Ls 460 (2054)
+.|+..+.+.+.+ ...+.|..+..++..+..+.+.|+++.|++++... +++.|.+|+++|.|++
T Consensus 35 ~~l~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~ 110 (458)
T 3nmz_A 35 YSLLSMLGTHDKD----DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII 110 (458)
T ss_dssp ----------CCH----HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHH----HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence 3444445554443 36778888888888888999999999999999863 3699999999999999
Q ss_pred ccCccchhhhhccccH----------HHHHhhhcCCC--hh-----h-------hHHHHHHHHHHhhhccchhhHHHhhC
Q 000145 461 RREVGIWEAIGKREGI----------QLLISLLGLSS--EQ-----H-------QEYAVQLIAILTEQVDDSKWAITAAG 516 (2054)
Q Consensus 461 ~~s~e~r~~Ive~ggI----------p~LV~LL~s~d--~~-----V-------r~~Aa~aL~nLs~~s~e~r~~I~~aG 516 (2054)
..+++......+.+.+ +.+++++.+.. .+ + +..|+++|.|++. ++++|..+.+.|
T Consensus 111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G 189 (458)
T 3nmz_A 111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELG 189 (458)
T ss_dssp HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTT
T ss_pred ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCC
Confidence 9888888777777776 55667676542 12 3 3389999999988 589999999999
Q ss_pred CCchHhhhhhc-----------CCHHHHHHHHHHHHHHhcCChhHHHHHHH-cCChHHHHHhhccCChhHHHHHHHHHHH
Q 000145 517 GIPPLVQLLEA-----------GSQKAREVAAHVLWILCCHSEDIRACVES-AGAVPAFLWLLKSGGPKGQDASAMALTK 584 (2054)
Q Consensus 517 aIp~LV~LL~s-----------~s~~Vre~AA~aL~nLa~~sd~~r~~I~e-~GaI~aLV~LLkS~~~evq~~AA~AL~n 584 (2054)
++++|+.+|.. .++.+++.|+++|.||+.+++..+..+.. .|+||.|+.+|+++++++++.++++|.|
T Consensus 190 ~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~n 269 (458)
T 3nmz_A 190 GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269 (458)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999952 24678999999999999988878877754 5569999999999999999999999999
Q ss_pred HHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHh-ccCCHHHHHHHHHHHHH
Q 000145 585 LIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL-NSSNEENQEYAASVLAD 663 (2054)
Q Consensus 585 Ls~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LL-ks~s~evre~Aa~ALan 663 (2054)
|+... ++ ..+..+.+.|+++.|+.++ +++++++++.|+.+|+|
T Consensus 270 Ls~~~---------------~~---------------------~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~n 313 (458)
T 3nmz_A 270 LSWRA---------------DV---------------------NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWN 313 (458)
T ss_dssp HTSSC---------------CH---------------------HHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HhcCC---------------CH---------------------HHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 97421 11 1123355789999999974 66789999999999999
Q ss_pred HhhcChhhhhhhh-hCCCHHHHHHHhccCCH----HHHHHHHHHHHHhhC--CCCcccchhHHHHhcCChhhHHhhhhcC
Q 000145 664 LFSMRQDICGSLA-TDEIVNPCMRLLTSNTQ----MVATQSARALGALSR--PTKTKTTNKMSYIAEGDVKPLIKLAKTS 736 (2054)
Q Consensus 664 Las~~~e~r~~Iv-~~g~V~~Lv~LL~dgs~----~vr~~AA~AL~nLs~--s~~~~d~~r~~I~~~gaV~~Lv~LL~s~ 736 (2054)
|+.++++++..+. ..|+++.|+++|+++++ .+++.|+++|.||+. ...+ .++..+.+.|++++|+.+|.++
T Consensus 314 Ls~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~--~~~~~i~~~G~i~~Lv~LL~~~ 391 (458)
T 3nmz_A 314 LSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE--DHRQILRENNCLQTLLQHLKSH 391 (458)
T ss_dssp HHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHTTHHHHHHHHSSCS
T ss_pred HccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH--HHHHHHHHcccHHHHHHHHcCC
Confidence 9986677888887 78999999999987665 489999999999985 1222 6888899999999999999999
Q ss_pred CHHHHHHHHHHHHHhh-CChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCC
Q 000145 737 SIDAAETAVAALANLL-SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPV 798 (2054)
Q Consensus 737 d~~Vre~Al~AL~NLa-~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~ 798 (2054)
+.+++++|+++|+||+ .+++.+..+.+.|++++|+.++.++++++++.|+++|.||+.+.|.
T Consensus 392 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 392 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 9999999999999999 4889999999999999999999999999999999999999998653
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=299.02 Aligned_cols=400 Identities=14% Similarity=0.107 Sum_probs=340.2
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhcc--cCccchhhhhcc-ccHHHHHhhhcCC-ChhhhHHHHHHHHHHhhhccch
Q 000145 433 AKKVLIGLITMATADVREYLILSLTKLCR--REVGIWEAIGKR-EGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDS 508 (2054)
Q Consensus 433 ~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~--~s~e~r~~Ive~-ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLs~~s~e~ 508 (2054)
.++.++..+.+++++++..|+..|+++.. .++.. ..+.+. |+++.|+++++++ ++.+|..++++|.+++.++++.
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 36788999999999999999999999754 22333 445566 8999999999988 8899999999999999866677
Q ss_pred hhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhcc-CChhHHHHHHHHHHHHHH
Q 000145 509 KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKS-GGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 509 r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS-~~~evq~~AA~AL~nLs~ 587 (2054)
+..+.+.|+++.|+++|+++++.+|+.|+++|++++.+++..+..+.+.|+++.|+.++++ .++.++..++++|++++.
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 7778889999999999999999999999999999999888888988899999999999995 789999999999999996
Q ss_pred hh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHH
Q 000145 588 AA--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAAS 659 (2054)
Q Consensus 588 ~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ 659 (2054)
.. ..+.++.|+++++++++.++..+.++|++++...+ + ....+...|+++.|+.++++++++++..|++
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~--~-~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN--D-KIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH--H-HHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc--H-HHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence 53 14689999999999999999999999999875321 2 2233556789999999999999999999999
Q ss_pred HHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHH
Q 000145 660 VLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSID 739 (2054)
Q Consensus 660 ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~ 739 (2054)
+|.+++.++++.+..+.+.|+++.|+++++++++.++..|+++|++++.+.+ .....+.+.|+++.|+.++.+++++
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~---~~~~~~~~~~~l~~L~~~l~~~~~~ 333 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR---AQIQTVIDANIFPALISILQTAEFR 333 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHHHHSCHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 9999998777777888889999999999999999999999999999986432 4555678889999999999999999
Q ss_pred HHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCc--------hhHhhhhhhh
Q 000145 740 AAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVG--------DVLKGNAQCR 809 (2054)
Q Consensus 740 Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~--------e~i~~~i~~~ 809 (2054)
++..|+++|+|++. +++....+.+.|+++.|++++.+.+++++..|+++|.+++...+.. +.+...+...
T Consensus 334 v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 413 (450)
T 2jdq_A 334 TRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEA 413 (450)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHc
Confidence 99999999999985 5677777888999999999999999999999999999998753211 1234555567
Q ss_pred hhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 810 FVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 810 g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
|++++|..++.+.+ ...+..|..++..+-.
T Consensus 414 g~~~~l~~l~~~~~--~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 414 YGLDKIEFLQSHEN--QEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HCHHHHHHHHCHHH--HHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCC--HHHHHHHHHHHHHHCC
Confidence 88899988886543 3457788888887764
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=306.71 Aligned_cols=397 Identities=17% Similarity=0.195 Sum_probs=345.9
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHhhcCh--hhhHHHhhcchHHHHHHHhccCC-HHHHHHHHHHHHHhcccCccchh
Q 000145 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNI--FLSQWVSHAEAKKVLIGLITMAT-ADVREYLILSLTKLCRREVGIWE 468 (2054)
Q Consensus 392 e~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~--~~~~~L~~~g~I~~LI~LL~ssd-~evq~~Aa~AL~~Ls~~s~e~r~ 468 (2054)
.+.|+..+.+.+. .++..++.+|.++.... .....+...++++.|+.++.+++ +.+|..|+.+|.+++..+++.+.
T Consensus 76 l~~lv~~L~s~~~-~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 154 (528)
T 4b8j_A 76 LPAMIGGVYSDDN-NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK 154 (528)
T ss_dssp HHHHHHHHTSSCH-HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 3677778877765 48999999999995432 45567788899999999999887 99999999999999998788888
Q ss_pred hhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhh-hcCCHHHHHHHHHHHHHHhcCC
Q 000145 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHS 547 (2054)
Q Consensus 469 ~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL-~s~s~~Vre~AA~aL~nLa~~s 547 (2054)
.+.+.|+++.|+.+++++++.++..|+++|++|+..++..+..+...|++++|+.+| .+.++.++..++++|.+|+.+.
T Consensus 155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~ 234 (528)
T 4b8j_A 155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK 234 (528)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999987777889999999999999999 5679999999999999999864
Q ss_pred hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000145 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2054)
Q Consensus 548 d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~L 619 (2054)
+.... ....++++.|+.++++++++++..++++|.+++... +.++++.|+++|.+.++.++..+.++|+++
T Consensus 235 ~~~~~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 235 PQPSF-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SCCCH-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCcH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 33332 334899999999999999999999999999998653 246899999999999999999999999998
Q ss_pred HhhhcchHHHHhhhhcccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHH
Q 000145 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQ 698 (2054)
Q Consensus 620 a~~~~~~d~~~~~l~~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~ 698 (2054)
+... +.....+.+.|+++.|+.+++++ ++.++..|+++|.||+.++++....+.+.|+++.|+.++.++++.++..
T Consensus 314 ~~~~---~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 390 (528)
T 4b8j_A 314 VTGD---DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKE 390 (528)
T ss_dssp TTSC---HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred HcCC---HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence 7532 22334456789999999999999 9999999999999999878888888999999999999999999999999
Q ss_pred HHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCh------------HHHHHHHhcCc
Q 000145 699 SARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP------------DIAAEVLLEDV 766 (2054)
Q Consensus 699 AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~------------e~r~~Iv~~g~ 766 (2054)
|+++|++++..... ..+..+.+.|++++|+.+|.+.+++++..++.+|.||.... .....+.+.|+
T Consensus 391 a~~aL~nl~~~~~~--~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 468 (528)
T 4b8j_A 391 AAWAISNATSGGSH--DQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEG 468 (528)
T ss_dssp HHHHHHHHHHHSCH--HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTH
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCc
Confidence 99999999973222 56777889999999999999999999999999999997532 24667788999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 767 VSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 767 I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
+..|..+..+.++++++.|.+++.++...
T Consensus 469 ~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 469 LEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999998864
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-27 Score=303.75 Aligned_cols=402 Identities=15% Similarity=0.142 Sum_probs=345.7
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHhhcC--hhhhHHHhhcchHHHHHHHhccC-CHHHHHHHHHHHHHhcccCccch
Q 000145 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGN--IFLSQWVSHAEAKKVLIGLITMA-TADVREYLILSLTKLCRREVGIW 467 (2054)
Q Consensus 391 Ie~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n--~~~~~~L~~~g~I~~LI~LL~ss-d~evq~~Aa~AL~~Ls~~s~e~r 467 (2054)
..+.|+..+++.+. .++..++.+|.++... ......+...++++.|+.++.+. ++.+|..|+.+|.+++..+++.+
T Consensus 88 ~i~~lv~~L~s~~~-~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 88 ELPQMTQQLNSDDM-QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CHHHHHHHHSCSSH-HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHcCCCH-HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 34778888887765 4899999999999653 23345677789999999999997 89999999999999999877788
Q ss_pred hhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCC
Q 000145 468 EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS 547 (2054)
Q Consensus 468 ~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~s 547 (2054)
..+++.|+++.|+++++++++.++..|+++|++++..+++.+..+...|+++.|+++|.+.++.++..++++|.+|+.+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 88888999999999999999999999999999999876788888889999999999999999999999999999999765
Q ss_pred hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHH
Q 000145 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHV 619 (2054)
Q Consensus 548 d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~L 619 (2054)
+.........++++.|+.+++++++.++..++++|.+++... +.++++.|++++.+.++.++..+.++|+++
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 233334445899999999999999999999999999998652 247899999999999999999999999998
Q ss_pred HhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHH
Q 000145 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQS 699 (2054)
Q Consensus 620 a~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~A 699 (2054)
+... +.....+.+.|+++.|+.+++++++.++..|+++|.+++.++++....+++.|+++.|+.+|.++++.++..|
T Consensus 327 ~~~~---~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 327 VTGN---DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp TTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HcCC---HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 7432 2223335567899999999999999999999999999998778888888899999999999999999999999
Q ss_pred HHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChH------------HHHHHHhcCcH
Q 000145 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD------------IAAEVLLEDVV 767 (2054)
Q Consensus 700 A~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e------------~r~~Iv~~g~I 767 (2054)
+++|++++......+.....+.+.|++++|+.++.+.++.++..++++|.++....+ .+..+.+.|++
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 483 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcH
Confidence 999999987221101355577889999999999999999999999999999976322 34567889999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 768 SALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 768 ~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+.|..++.+.++.+++.|..+|.++....
T Consensus 484 ~~L~~L~~~~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 484 EKIFNCQQNENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 99999999999999999999999998754
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=295.13 Aligned_cols=396 Identities=15% Similarity=0.151 Sum_probs=337.0
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhc---ChhhhHHHhhc-chHHHHHHHhccC-CHHHHHHHHHHHHHhcccCccch
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYG---NIFLSQWVSHA-EAKKVLIGLITMA-TADVREYLILSLTKLCRREVGIW 467 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~---n~~~~~~L~~~-g~I~~LI~LL~ss-d~evq~~Aa~AL~~Ls~~s~e~r 467 (2054)
+.|+..+++.+. .+|..++.+|..+.. ++.. +.+... +.++.|+.++.++ ++++|..++.+|.+++..+++..
T Consensus 23 ~~l~~~l~s~~~-~~r~~A~~~L~~l~~~~~~~~~-~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 23 SDMIEMIFSKSP-EQQLSATQKFRKLLSKEPNPPI-DEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp HHHHHHHHSSCH-HHHHHHHHHHHHHHHSSSSCCH-HHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHHhcCCCCCcH-HHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 667777776655 489999999999743 3343 344555 8999999999998 89999999999999998766777
Q ss_pred hhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc-CCHHHHHHHHHHHHHHhcC
Q 000145 468 EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCH 546 (2054)
Q Consensus 468 ~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s-~s~~Vre~AA~aL~nLa~~ 546 (2054)
..+.+.|++|.|+++++++++.+|+.|+++|++++..+++.+..+.+.|+++.|+++|.+ .+..++..++++|++++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 778888999999999999999999999999999999767788888999999999999996 6899999999999999975
Q ss_pred C-hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHH
Q 000145 547 S-EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLG 617 (2054)
Q Consensus 547 s-d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~ 617 (2054)
. +..+..+. .++++.|+.+++++++.++..++++|.+++... +.+.++.|++++.+.++.++..+.++|+
T Consensus 181 ~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 259 (450)
T 2jdq_A 181 KSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVG 259 (450)
T ss_dssp SSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHH
Confidence 4 22222222 789999999999999999999999999998652 2468999999999999999999999999
Q ss_pred HHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHH
Q 000145 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697 (2054)
Q Consensus 618 ~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~ 697 (2054)
+++... +.....+.+.|+++.|+.+++++++.+|..|+++|.+++.++++....+.+.|+++.|+++++++++.+|.
T Consensus 260 ~l~~~~---~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~ 336 (450)
T 2jdq_A 260 NIVTGD---DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 336 (450)
T ss_dssp HHTTSC---HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHH
T ss_pred HHhhCC---hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHH
Confidence 987532 22233355678999999999999999999999999999987888888888899999999999999999999
Q ss_pred HHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChH------------HHHHHHhcC
Q 000145 698 QSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD------------IAAEVLLED 765 (2054)
Q Consensus 698 ~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e------------~r~~Iv~~g 765 (2054)
.|+++|++++..... .....+.+.|++++|+.++++.+.+++..|+++|.+++...+ ....+.+.|
T Consensus 337 ~a~~~L~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 414 (450)
T 2jdq_A 337 EAAWAITNATSGGSA--EQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAY 414 (450)
T ss_dssp HHHHHHHHHHHHCCH--HHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCH--HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcC
Confidence 999999999863222 455567788999999999999999999999999999986332 245677889
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHhhhcC
Q 000145 766 VVSALTRVLAEGTSEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 766 ~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~ 796 (2054)
+++.|..++.+.+.++++.|..+|.++..+.
T Consensus 415 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 415 GLDKIEFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 9999999999889999999999999998653
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-27 Score=298.16 Aligned_cols=361 Identities=16% Similarity=0.179 Sum_probs=299.1
Q ss_pred cHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
.+|.|+++|+++++.+|..|+++|++++.+++..+..+.+.|++|.|+++|+++++++++.|+++|.||+.++++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999998777788899999999999999999999999999999999999889999999
Q ss_pred HHcCChHHHHHhhc-cCChhHHHHHHHHHHHHHHhhc------hhhHHHHHHHhc--------CC--------CcchHHH
Q 000145 555 ESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAAD------SATINQLLALLL--------GD--------SPSSKAH 611 (2054)
Q Consensus 555 ~e~GaI~aLV~LLk-S~~~evq~~AA~AL~nLs~~~e------~~~Ip~Lv~LL~--------~~--------~~~V~~~ 611 (2054)
.+.|++|.|+.+|+ ++++++++.++|+|+|++.+++ .+++|+|++++. +. ++.+...
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 99999999999999 8899999999999999997632 278999999993 22 3445668
Q ss_pred HHHHHHHHHhhhcchHHHHhhhhcc-cchHHHHHHhcc------CCHHHHHHHHHHHHHHhhc-----------------
Q 000145 612 VIKVLGHVLTMALQEDLVQKGSAAN-KGLRSLVQVLNS------SNEENQEYAASVLADLFSM----------------- 667 (2054)
Q Consensus 612 a~~AL~~La~~~~~~d~~~~~l~~~-GaI~~LV~LLks------~s~evre~Aa~ALanLas~----------------- 667 (2054)
+.++|++|+.. ++ .+..+.+. |+++.|+.++++ .+.+++++++++|.||+..
T Consensus 163 a~~aL~nLs~~---~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 163 ATGCLRNLSSA---DA-GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHTTS---HH-HHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHccC---HH-HHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 99999998753 33 34456666 999999999986 4567899999999999731
Q ss_pred ---------------------------------ChhhhhhhhhCCCHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCcc
Q 000145 668 ---------------------------------RQDICGSLATDEIVNPCMRLLTSN-TQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 668 ---------------------------------~~e~r~~Iv~~g~V~~Lv~LL~dg-s~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
+++....+++.|+++.|+.+|++. ++.+++.|+++|.||+.+....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 112234456678899999999764 6899999999999999744321
Q ss_pred c-ch-hHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCC------HHHHHHH
Q 000145 714 T-TN-KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGT------SEGKKNA 785 (2054)
Q Consensus 714 d-~~-r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~------~evr~~A 785 (2054)
. .. +..+.+.|++++|+++|.+++.+++.+|+++|.||+.+++.+..+. .+++++|+++|..++ +++...+
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~-~~~i~~Lv~lL~~~~~~~~~~~~v~~~~ 397 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSA 397 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHH-HhhhHHHHHhccCCCCCCCCcHHHHHHH
Confidence 0 12 3344578999999999999999999999999999999888877665 479999999999874 4788899
Q ss_pred HHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhccc
Q 000145 786 SRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQ 844 (2054)
Q Consensus 786 a~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~ 844 (2054)
+++|.|+.... ......+.+.|++++|++++.++ .......+|...|.++...++
T Consensus 398 l~~l~ni~~~~---~~~~~~i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 398 CYTVRNLMASQ---PQLAKQYFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHTTC---THHHHHHCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHhcC---HHHHHHHHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcchh
Confidence 99999998765 45667777899999999999876 234568889888888775443
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=296.99 Aligned_cols=391 Identities=19% Similarity=0.171 Sum_probs=290.5
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCC-----------ChhHHHHHHHHHHHH
Q 000145 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN-----------DISVRASAADALEAL 286 (2054)
Q Consensus 218 I~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~-----------d~~Vr~~Aa~aL~nL 286 (2054)
++.++..+.+.+++ ...+.|..+. .+++.|..+.+.|++|.|+++|.... +.+++..|+++|.|+
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~-~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni 109 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMS-SSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109 (458)
T ss_dssp -----------CCH---HHHHHHHHHH-SSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHH-cCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 55566666655544 2666777777 45567778899999999999998532 268999999999999
Q ss_pred hhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHH
Q 000145 287 SSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIG 366 (2054)
Q Consensus 287 s~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~Lg 366 (2054)
..++++..+...+.+.++.|-. +.+ ++.. +.++++++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~-~~~----------------~~~~---------------~~~~~~~~~~--------- 148 (458)
T 3nmz_A 110 IHSQPDDKRGRREIRVLHLLEQ-IRA----------------YCET---------------CWEWQEAHEP--------- 148 (458)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHH-HHH----------------HHHH---------------HHHHHTTTSS---------
T ss_pred HccCcchhHHHHHHHHHHHHHH-hhh----------------hhHH---------------HHHHHHhhcc---------
Confidence 9986666655554444433321 100 0000 0011111000
Q ss_pred HHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhcc---
Q 000145 367 ALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM--- 443 (2054)
Q Consensus 367 aL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~s--- 443 (2054)
+.+.++..+.. . -+..+-.|+.+|++++.++.+++.+.+.|++++|+.++..
T Consensus 149 -----------~~~~~~~~~~~-------------~-~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~ 203 (458)
T 3nmz_A 149 -----------GMDQDKNPMPA-------------P-VEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCE 203 (458)
T ss_dssp -----------SSCCCSCC--C-------------C-CTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred -----------ccccccCCccc-------------h-hhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhc
Confidence 00000000000 0 0013347889999999899999999999999999999952
Q ss_pred --------CCHHHHHHHHHHHHHhcccCccchhhhhcccc-HHHHHhhhcCCChhhhHHHHHHHHHHhhh-ccchhhHHH
Q 000145 444 --------ATADVREYLILSLTKLCRREVGIWEAIGKREG-IQLLISLLGLSSEQHQEYAVQLIAILTEQ-VDDSKWAIT 513 (2054)
Q Consensus 444 --------sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~gg-Ip~LV~LL~s~d~~Vr~~Aa~aL~nLs~~-s~e~r~~I~ 513 (2054)
.++.+|++|+++|.+++.+++.++..+...+| ||.|+++|+++++++++.|+++|+||+.. ++++|..+.
T Consensus 204 ~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~ 283 (458)
T 3nmz_A 204 MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR 283 (458)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 23678999999999999986667777765555 99999999999999999999999999984 467899999
Q ss_pred hhCCCchHhhhh-hcCCHHHHHHHHHHHHHHhcCChhHHHHHH-HcCChHHHHHhhccCCh----hHHHHHHHHHHHHHH
Q 000145 514 AAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRACVE-SAGAVPAFLWLLKSGGP----KGQDASAMALTKLIR 587 (2054)
Q Consensus 514 ~aGaIp~LV~LL-~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~-e~GaI~aLV~LLkS~~~----evq~~AA~AL~nLs~ 587 (2054)
+.|++++|+++| .++++.+++.++.+|+||+.+.++++..+. ..|+++.|+.+++++++ ++++.++++|.|++.
T Consensus 284 ~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~ 363 (458)
T 3nmz_A 284 EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363 (458)
T ss_dssp HTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHh
Confidence 999999999975 567899999999999999986666676666 79999999999988765 489999999999875
Q ss_pred hhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhc
Q 000145 588 AADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2054)
Q Consensus 588 ~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~ 667 (2054)
.. ...+ ..+..+.+.|+++.|+.++++++.++++.|+++|+||+..
T Consensus 364 ~~---------------------------------a~~~-~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~ 409 (458)
T 3nmz_A 364 LI---------------------------------ATNE-DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 409 (458)
T ss_dssp HH---------------------------------TTCH-HHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS
T ss_pred cc---------------------------------cCCH-HHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC
Confidence 20 0001 1233356788999999999999999999999999999977
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc
Q 000145 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 668 ~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
+++.+..+.+.|++++|+.+++++++.+++.|+++|.||+..++.
T Consensus 410 ~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ 454 (458)
T 3nmz_A 410 NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454 (458)
T ss_dssp CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence 899999999999999999999999999999999999999986655
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=279.36 Aligned_cols=499 Identities=12% Similarity=0.065 Sum_probs=342.9
Q ss_pred HHHHHHHhh-cChhhhHH-HhhcchHHHHHHHhccCC-HHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCC
Q 000145 411 VLEAMASLY-GNIFLSQW-VSHAEAKKVLIGLITMAT-ADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSS 487 (2054)
Q Consensus 411 Aa~AL~~L~-~n~~~~~~-L~~~g~I~~LI~LL~ssd-~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d 487 (2054)
+..++..++ --+++... +...+..+.+...+.+.. ..+...+...|...|.+ ...|..| ..++++.|.+++++
T Consensus 232 ~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~-~~cR~~I-~~~~~~~L~~~l~~-- 307 (778)
T 3opb_A 232 IVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACID-ETMRTYI-TENYLQLLERSLNV-- 307 (778)
T ss_dssp HHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS-HHHHHHH-HHHHHHHHHHHTTS--
T ss_pred HHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC-cHHHHHH-HHhHHHHHHHHhcc--
Confidence 334444442 23444444 444566777887775544 44444555555555555 5667777 56888999999875
Q ss_pred hhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhh
Q 000145 488 EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL 567 (2054)
Q Consensus 488 ~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LL 567 (2054)
+.+|..|+.+|++|..........+. ...+.+.+.|.+++.+-+.+|+++|.+|+.+.+....+..+.++++.|+.++
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~ll 385 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMI 385 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHH
Confidence 58999999999999874433222221 1345566677777767799999999999997666656666677899999999
Q ss_pred cc-CChhHHHHHHHHHHHHHHhhc-----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHH
Q 000145 568 KS-GGPKGQDASAMALTKLIRAAD-----SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRS 641 (2054)
Q Consensus 568 kS-~~~evq~~AA~AL~nLs~~~e-----~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~ 641 (2054)
++ .+..+.+.++.+|.|++...+ ...+..|.++.+...++...... . +.......+..++.+.+.|+++.
T Consensus 386 k~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~-~---~~~~~~v~~~~~~~l~eaGvIp~ 461 (778)
T 3opb_A 386 KSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGA-E---KAAKEDILLFNEKYILRTELISF 461 (778)
T ss_dssp TTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCT-H---HHHHHHHHHHHHHHTTTTTHHHH
T ss_pred hCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccc-c---ccchHHHHHHHHHHHHHCcCHHH
Confidence 95 788999999999999998643 12333444443322121111000 0 00111112334566889999999
Q ss_pred HHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHH---HHHHHHHHHHHhhCCCCcccchhH
Q 000145 642 LVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQM---VATQSARALGALSRPTKTKTTNKM 718 (2054)
Q Consensus 642 LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~---vr~~AA~AL~nLs~s~~~~d~~r~ 718 (2054)
|+.+++++++.+|+.++++|.+|+. ++++|..++++|++++|+.++.++++. +|..|++||.++..+.++ ....
T Consensus 462 Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np--~~~f 538 (778)
T 3opb_A 462 LKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP--GLIF 538 (778)
T ss_dssp HHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH--HHHS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH--HHHc
Confidence 9999999999999999999999987 799999999999999999999988765 899999999999963322 1110
Q ss_pred -HHHhcCChhhHHhhhhc--CC-----------H-HHHHHHHHHHHHhhCCh-----HHHHHHHhc-CcHHHHHHHHcCC
Q 000145 719 -SYIAEGDVKPLIKLAKT--SS-----------I-DAAETAVAALANLLSDP-----DIAAEVLLE-DVVSALTRVLAEG 777 (2054)
Q Consensus 719 -~I~~~gaV~~Lv~LL~s--~d-----------~-~Vre~Al~AL~NLa~~~-----e~r~~Iv~~-g~I~~LV~LL~s~ 777 (2054)
.....|+++||+.+|.. .. + -.+.+|+.||+||+..+ +.|..|+++ |+++.|+.+|.++
T Consensus 539 ~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~ 618 (778)
T 3opb_A 539 KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE 618 (778)
T ss_dssp SSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCS
T ss_pred CCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCC
Confidence 00013899999999983 21 1 12668999999999865 468888885 9999999999999
Q ss_pred CHHHHHHHHHHHHHhhhcCCCc-hhHhhhh--hhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc-ccCCCccCCcc
Q 000145 778 TSEGKKNASRALHQLLKHFPVG-DVLKGNA--QCRFVVLTLVDSLNAMDMNGTDVADALEVVALLART-KQGLNFTYPPW 853 (2054)
Q Consensus 778 ~~evr~~Aa~AL~nL~~~~~~~-e~i~~~i--~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~-~~~~~~i~~~~ 853 (2054)
++.+|++|+++++||+.+...- ..+.... ...+.++.|+.+++. ++...+.+|..+|++++.. ...+..+.
T Consensus 619 n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s--~D~~~r~AAagALAnLts~~~~ia~~ll--- 693 (778)
T 3opb_A 619 NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL--SDVESQRAVAAIFANIATTIPLIAKELL--- 693 (778)
T ss_dssp SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHCHHHHHHHT---
T ss_pred CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC--CCHHHHHHHHHHHHHhcCCChHHHHHHH---
Confidence 9999999999999999854210 1221111 112347889999975 4456699999999999743 22222222
Q ss_pred cccccCCCchHHHHHhhhc--CChhHHHHHHHHHHHhhc----cCCchhhhhhhcccccHHHHHHHHhcccCceeehhhh
Q 000145 854 AALAEVPSSIEPLVCCLAE--GPPPLQDKAIEILSRLCG----DQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGA 927 (2054)
Q Consensus 854 ~~~~~~~~~L~~Lv~ll~~--~~~~vq~~Ai~iL~~L~~----~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~ 927 (2054)
...++++.++.++.+ +++.++++|+.++.|+.. +...-.......+.+++..|.+.+-.++..+-.+.+.
T Consensus 694 ----~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~~~~ 769 (778)
T 3opb_A 694 ----TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAI 769 (778)
T ss_dssp ----TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTTSHH
T ss_pred ----HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHHHHH
Confidence 123578999999998 889999999999999986 2222122333557888999998777777777777766
Q ss_pred HHHH
Q 000145 928 ALLI 931 (2054)
Q Consensus 928 ~~~i 931 (2054)
..+.
T Consensus 770 ~~~~ 773 (778)
T 3opb_A 770 PVIL 773 (778)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=263.11 Aligned_cols=275 Identities=20% Similarity=0.190 Sum_probs=237.5
Q ss_pred CCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc-----------CCHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-----------GSQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s-----------~s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
.++...+..|+++|.|++. ++++|..+.+.|++++|+.+|.. .++.+|+.|+++|.||+.+++..+..
T Consensus 43 ~~~~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 43 APVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp CGGGGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445667789999999998 58999999999999999999953 24789999999999999988878888
Q ss_pred HHH-cCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 554 VES-AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 554 I~e-~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
+.. .|+||.|+.+|+++++++++.++++|.||+...+ + ..+..
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~---------------~---------------------~~k~~ 165 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRAD---------------V---------------------NSKKT 165 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCC---------------H---------------------HHHHH
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCC---------------H---------------------HHHHH
Confidence 755 4569999999999999999999999999975311 1 11233
Q ss_pred hhcccchHHHHHH-hccCCHHHHHHHHHHHHHHhhcChhhhhhhh-hCCCHHHHHHHhccCCH----HHHHHHHHHHHHh
Q 000145 633 SAANKGLRSLVQV-LNSSNEENQEYAASVLADLFSMRQDICGSLA-TDEIVNPCMRLLTSNTQ----MVATQSARALGAL 706 (2054)
Q Consensus 633 l~~~GaI~~LV~L-Lks~s~evre~Aa~ALanLas~~~e~r~~Iv-~~g~V~~Lv~LL~dgs~----~vr~~AA~AL~nL 706 (2054)
+.+.|+++.|+.+ ++++++++++.|+++|+||+..+++++..+. ..|+++.|+++|+++++ .+++.|+++|.||
T Consensus 166 i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nL 245 (354)
T 3nmw_A 166 LREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNV 245 (354)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHH
Confidence 5578899999997 4667899999999999999986677888887 78999999999998765 5899999999999
Q ss_pred hCC--CCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHH
Q 000145 707 SRP--TKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKK 783 (2054)
Q Consensus 707 s~s--~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~ 783 (2054)
+.. ..+ .++..+.+.|++++|+.+|.+++.+++++|+++|+||+. +++.+..+.+.|++++|++++.++++++|+
T Consensus 246 s~~~a~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~ 323 (354)
T 3nmw_A 246 SSLIATNE--DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAM 323 (354)
T ss_dssp HHHHTTCH--HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHH
T ss_pred HhhccCCH--HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHH
Confidence 851 122 688899999999999999999999999999999999994 788999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCC
Q 000145 784 NASRALHQLLKHFPV 798 (2054)
Q Consensus 784 ~Aa~AL~nL~~~~~~ 798 (2054)
.|+++|.||+.+.+.
T Consensus 324 ~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 324 GSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHcCCHH
Confidence 999999999998653
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=260.96 Aligned_cols=272 Identities=18% Similarity=0.154 Sum_probs=235.5
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhcc-----------CCHHHHHHHHHHHHHhcccCccchhhhhcccc
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM-----------ATADVREYLILSLTKLCRREVGIWEAIGKREG 475 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~s-----------sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~gg 475 (2054)
.+..|+.+|++++.++++++.+.+.|+++.|+.++.. .++++|++|+.+|.+++.++..++..+...+|
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 4557899999999999999999999999999999953 23678999999999999986668877765555
Q ss_pred -HHHHHhhhcCCChhhhHHHHHHHHHHhhh-ccchhhHHHhhCCCchHhhhh-hcCCHHHHHHHHHHHHHHhcCChhHHH
Q 000145 476 -IQLLISLLGLSSEQHQEYAVQLIAILTEQ-VDDSKWAITAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRA 552 (2054)
Q Consensus 476 -Ip~LV~LL~s~d~~Vr~~Aa~aL~nLs~~-s~e~r~~I~~aGaIp~LV~LL-~s~s~~Vre~AA~aL~nLa~~sd~~r~ 552 (2054)
||.|+++|+++++++++.|+++|+||+.. ++++|..+.+.|++++|+++| +++++++++.|+++|+||+.+.++++.
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 99999999999999999999999999984 467899999999999999975 567899999999999999987777777
Q ss_pred HHH-HcCChHHHHHhhccCCh----hHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchH
Q 000145 553 CVE-SAGAVPAFLWLLKSGGP----KGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED 627 (2054)
Q Consensus 553 ~I~-e~GaI~aLV~LLkS~~~----evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d 627 (2054)
.+. ..|+++.|+.+++++++ ++++.++++|.|++... ... +
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~---------------------------------a~~-~ 253 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI---------------------------------ATN-E 253 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH---------------------------------TTC-H
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc---------------------------------cCC-H
Confidence 776 79999999999988765 48899999999987520 000 1
Q ss_pred HHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 000145 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2054)
Q Consensus 628 ~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs 707 (2054)
..+..+.+.|+++.|+.++++++.++++.|+++|.||+..+++.+..+.+.|++++|+++++++++.+++.|+++|.||+
T Consensus 254 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 254 DHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 333 (354)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 12334567899999999999999999999999999999778999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 000145 708 RPTKT 712 (2054)
Q Consensus 708 ~s~~~ 712 (2054)
...+.
T Consensus 334 ~~~~~ 338 (354)
T 3nmw_A 334 ANRPA 338 (354)
T ss_dssp TTCCG
T ss_pred cCCHH
Confidence 85544
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=245.63 Aligned_cols=494 Identities=14% Similarity=0.128 Sum_probs=335.6
Q ss_pred HHHHHHHHHHHHhhcCCCcch-hcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhc
Q 000145 233 QSNAASLLARLMLAFGDSIPT-VIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIV 311 (2054)
Q Consensus 233 q~~A~~aL~nLs~~~~~~r~~-i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~ 311 (2054)
...+..+|..+.-..|+.+.. +...|..+.+...+.+.++..+...+...+...+.+ ...|..+ ..++++.|.+.+.
T Consensus 229 ~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~-~~cR~~I-~~~~~~~L~~~l~ 306 (778)
T 3opb_A 229 LSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACID-ETMRTYI-TENYLQLLERSLN 306 (778)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCS-HHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCC-cHHHHHH-HHhHHHHHHHHhc
Confidence 344555555444222332333 457788898888886556666666677777766764 6677666 5677788888875
Q ss_pred CCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhH
Q 000145 312 APSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQI 391 (2054)
Q Consensus 312 s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gI 391 (2054)
+. .++..|...|.++..... .. ...-...
T Consensus 307 ~~-----------~ir~lAavvL~KL~~~~~--------------------------------------~~--~~si~~L 335 (778)
T 3opb_A 307 VE-----------DVQIYSALVLVKTWSFTK--------------------------------------LT--CINLKQL 335 (778)
T ss_dssp SG-----------GGHHHHHHHHHHHTGGGT--------------------------------------CT--TCCHHHH
T ss_pred cH-----------HHHHHHHHHHHHHhcCCC--------------------------------------CC--cCcHHHH
Confidence 42 156677777766542100 00 0011123
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcc-hHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhh
Q 000145 392 EDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAE-AKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEA 469 (2054)
Q Consensus 392 e~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g-~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~ 469 (2054)
.+.++..+...+.+ -+.++++.|..+.-+++++..+.... .++.|+.++.. .+..+...++..|.|++...+....
T Consensus 336 a~~~~~~L~~~~~~-~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~- 413 (778)
T 3opb_A 336 SEIFINAISRRIVP-KVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX- 413 (778)
T ss_dssp HHHHHHHTTTCCHH-HHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC-
T ss_pred HHHHHHHHhcCCcc-HHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch-
Confidence 35566666665544 48999999999999999999998875 48999999985 7788899999999999987433211
Q ss_pred hhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChh
Q 000145 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED 549 (2054)
Q Consensus 470 Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~ 549 (2054)
+...+..|..+.+.+.+........ +-+=......++..+.+.|++|+|+.+++++++.+|+.++++|.+|+.+ ..
T Consensus 414 --e~~~l~~Lk~~A~~~~p~~~~~d~~-~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~ 489 (778)
T 3opb_A 414 --XXXXXXXXXXXXXXXXPAADKVGAE-KAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN 489 (778)
T ss_dssp --CCC------------------CCTH-HHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG
T ss_pred --hhhhhhhhhhhccccCcccCccccc-ccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH
Confidence 1235556666655433322211110 1000110112567788999999999999999999999999999999874 77
Q ss_pred HHHHHHHcCChHHHHHhhccCChh---HHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcch
Q 000145 550 IRACVESAGAVPAFLWLLKSGGPK---GQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQE 626 (2054)
Q Consensus 550 ~r~~I~e~GaI~aLV~LLkS~~~e---vq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~ 626 (2054)
.|..+.+.|++++|+.++.+++.. ++..|+.+|.++....+ +.+. . .
T Consensus 490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n---------------p~~~------------f-~-- 539 (778)
T 3opb_A 490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN---------------PGLI------------F-K-- 539 (778)
T ss_dssp GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC---------------HHHH------------S-S--
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC---------------HHHH------------c-C--
Confidence 899999999999999999988654 89999999999975532 1100 0 0
Q ss_pred HHHHhhhhcccchHHHHHHhcc--CCH------------HHHHHHHHHHHHHhhcC----hhhhhhhhhC-CCHHHHHHH
Q 000145 627 DLVQKGSAANKGLRSLVQVLNS--SNE------------ENQEYAASVLADLFSMR----QDICGSLATD-EIVNPCMRL 687 (2054)
Q Consensus 627 d~~~~~l~~~GaI~~LV~LLks--~s~------------evre~Aa~ALanLas~~----~e~r~~Iv~~-g~V~~Lv~L 687 (2054)
+....|++++|+.+|.. +.. -.+..|+.+|.||++.+ ++.|..+++. |+++.|..+
T Consensus 540 -----~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~L 614 (778)
T 3opb_A 540 -----KYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENL 614 (778)
T ss_dssp -----SSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHG
T ss_pred -----CCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHH
Confidence 00112678899998872 111 23778999999999854 3568888886 999999999
Q ss_pred hccCCHHHHHHHHHHHHHhhCCCCcccchh-HHHHhcC------ChhhHHhhhhcCCHHHHHHHHHHHHHhh-CChHHHH
Q 000145 688 LTSNTQMVATQSARALGALSRPTKTKTTNK-MSYIAEG------DVKPLIKLAKTSSIDAAETAVAALANLL-SDPDIAA 759 (2054)
Q Consensus 688 L~dgs~~vr~~AA~AL~nLs~s~~~~d~~r-~~I~~~g------aV~~Lv~LL~s~d~~Vre~Al~AL~NLa-~~~e~r~ 759 (2054)
+.++++.+|+.|+++++||+. .+ ..+ ..+.+.+ .+++|+.++++++.++|.+|+++|+|++ .++..+.
T Consensus 615 L~s~n~~VrrAA~elI~NL~~-~~---e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~ 690 (778)
T 3opb_A 615 MLDENVPLQRSTLELISNMMS-HP---LTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAK 690 (778)
T ss_dssp GGCSSHHHHHHHHHHHHHHHT-SG---GGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhC-Cc---HHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHH
Confidence 999999999999999999996 22 222 1232222 3778999999999999999999999996 5888888
Q ss_pred HHHhc-CcHHHHHHHHcC--CCHHHHHHHHHHHHHhhhcCCC--c-hhHhhhhhhhhhHHHHHHhhccCCC
Q 000145 760 EVLLE-DVVSALTRVLAE--GTSEGKKNASRALHQLLKHFPV--G-DVLKGNAQCRFVVLTLVDSLNAMDM 824 (2054)
Q Consensus 760 ~Iv~~-g~I~~LV~LL~s--~~~evr~~Aa~AL~nL~~~~~~--~-e~i~~~i~~~g~v~~LV~LL~sg~~ 824 (2054)
.+++. ++++.+++++.+ ++++++..++.++.||....+. . +.+..-.........|..+++..+.
T Consensus 691 ~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~ 761 (778)
T 3opb_A 691 ELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDS 761 (778)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSS
T ss_pred HHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCc
Confidence 88876 799999999999 8999999999999999963221 1 2222222234556667777765543
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-19 Score=236.86 Aligned_cols=704 Identities=13% Similarity=0.111 Sum_probs=443.8
Q ss_pred hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHc---cCCHHHHHHHHHHHHHhc
Q 000145 36 STMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILR---SGTPLAKVNVAATLSVLC 112 (2054)
Q Consensus 36 ~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLk---s~s~evr~~AA~vL~~Ls 112 (2054)
.....+.++++... +.+...|..|-..|..+... .|....|..++. +.++.+|..|+-.|++..
T Consensus 10 ~~~~~l~~~l~~~~--s~d~~~r~~Ae~~L~~~~~~-----------p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i 76 (852)
T 4fdd_A 10 QGLQQILQLLKESQ--SPDTTIQRTVQQKLEQLNQY-----------PDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNV 76 (852)
T ss_dssp HHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHTTS-----------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHhC-----------CCHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 34555666666554 34677888888888766332 234455555554 568899999999997764
Q ss_pred cC------chhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCC
Q 000145 113 KD------EDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186 (2054)
Q Consensus 113 ~~------ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~ 186 (2054)
.. ++.+..+ -+.+++.|.++++.+|..++.++..++..... . .-.+.++.|++.+.+++
T Consensus 77 ~~~w~~~~~~~~~~i-----k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~-------~wp~ll~~L~~~l~~~~-- 141 (852)
T 4fdd_A 77 KAHFQNFPNGVTDFI-----KSECLNNIGDSSPLIRATVGILITTIASKGEL-Q-------NWPDLLPKLCSLLDSED-- 141 (852)
T ss_dssp TTSGGGCCHHHHHHH-----HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-T-------TCTTHHHHHHHHHSCSS--
T ss_pred HHccCCCCHHHHHHH-----HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-c-------ccHHHHHHHHHHHcCCC--
Confidence 32 2333333 35677778888999999999999999863210 0 01348899999997654
Q ss_pred ChhHHHHHHHHHHHHhcCCCchhHH-H---HhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhc--ccchH
Q 000145 187 DNVVQGFVTGALRNLCGDKDGYWRA-T---LEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVI--DSGAV 260 (2054)
Q Consensus 187 d~~V~e~Al~aL~nL~~~~e~r~~a-I---~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~--~sGaL 260 (2054)
..+++.++.+|..+|......... . .-...++.++..+.++++.+|..|+.+|..+....+. .+. -...+
T Consensus 142 -~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~---~~~~~~~~~l 217 (852)
T 4fdd_A 142 -YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ---ALMLHIDSFI 217 (852)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH---HHHTSHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH---HHHHHHHHHH
Confidence 568889999999998754322100 0 0122467788888888999999999999876632211 111 12466
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcC
Q 000145 261 KALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGG 340 (2054)
Q Consensus 261 ~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGg 340 (2054)
+.+...+. +.+..+|..+..+|..+....++.-.... .+.+
T Consensus 218 ~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~------------------------------------- 258 (852)
T 4fdd_A 218 ENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIV------------------------------------- 258 (852)
T ss_dssp HHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHH-------------------------------------
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHH-------------------------------------
Confidence 77777766 46778888888888877764221100000 0111
Q ss_pred chhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhc
Q 000145 341 MPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYG 420 (2054)
Q Consensus 341 is~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~ 420 (2054)
+.+..++++.+ +.++..++..+..++.
T Consensus 259 ----------------------------------------------------~~l~~~~~~~~-~~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 259 ----------------------------------------------------EYMLQRTQDQD-ENVALEACEFWLTLAE 285 (852)
T ss_dssp ----------------------------------------------------HHHHHHHTCSS-HHHHHHHHHHHHHHTT
T ss_pred ----------------------------------------------------HHHHHHccCCc-HHHHHHHHHHHHHHhc
Confidence 22222223222 2244555555555444
Q ss_pred ChhhhHHHhh--cchHHHHHHHh-----------cc-----------CCHHHHHHHHHHHHHhcccCccchhhhhccccH
Q 000145 421 NIFLSQWVSH--AEAKKVLIGLI-----------TM-----------ATADVREYLILSLTKLCRREVGIWEAIGKREGI 476 (2054)
Q Consensus 421 n~~~~~~L~~--~g~I~~LI~LL-----------~s-----------sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggI 476 (2054)
....++.+.. ...++.++..+ .. .+..++..++.+|..++...++ .+. ...+
T Consensus 286 ~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~ 361 (852)
T 4fdd_A 286 QPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL-PHIL 361 (852)
T ss_dssp STTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHH
Confidence 3322221111 12233344433 11 1223577888888888765321 221 2467
Q ss_pred HHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChh--HHHHH
Q 000145 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED--IRACV 554 (2054)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~--~r~~I 554 (2054)
+.+.+++++++..+|..|+.+|++++....+. ....-.+.++.++.+++++++.+|..+++++++++..... ....
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~-~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~- 439 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCMQG-MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY- 439 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH-HGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT-
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH-
Confidence 77888888899999999999999998754321 1112245788899999999999999999999999752111 0011
Q ss_pred HHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc--
Q 000145 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-- 625 (2054)
Q Consensus 555 ~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~-- 625 (2054)
-.+.++.|+..+++.++.+|..++++|.+++.... ...++.|..+++..+......+..+++.+......
T Consensus 440 -~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~ 518 (852)
T 4fdd_A 440 -LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL 518 (852)
T ss_dssp -HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhh
Confidence 13467788888888999999999999999986532 24567777777766555555677888877643221
Q ss_pred --hHHHHhhhhcccchHHHHH---HhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc----------
Q 000145 626 --EDLVQKGSAANKGLRSLVQ---VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS---------- 690 (2054)
Q Consensus 626 --~d~~~~~l~~~GaI~~LV~---LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d---------- 690 (2054)
++... ..++.+++ .+++++++.+ .+..++..++..-....... -..+++.++.++++
T Consensus 519 ~~~~~~~------~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~-~~~i~~~~~~~l~~~l~~~~~~~~ 590 (852)
T 4fdd_A 519 NKPEYIQ------MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPY-CEPVYQRCVNLVQKTLAQAMLNNA 590 (852)
T ss_dssp CCHHHHH------HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH------HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11211 23555553 3445566664 67788877765311111111 11233444444321
Q ss_pred -------CCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChH-HHHHH
Q 000145 691 -------NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPD-IAAEV 761 (2054)
Q Consensus 691 -------gs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e-~r~~I 761 (2054)
.+...+..+..+++.++..... ..+..+.+.+.++.+..++.+.+.++++.+..+++.++. .+. ....+
T Consensus 591 ~~~~~~~~d~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l 668 (852)
T 4fdd_A 591 QPDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI 668 (852)
T ss_dssp CTTTSCCCCTHHHHHHHHHHHHHHHHHGG--GGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred CCcccCCCcchHHHHHHHHHHHHHHHHhH--hHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2456788889999999863322 344444456788889999998899999999999999974 222 12222
Q ss_pred HhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 762 LLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 762 v~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
+..++.+.+.+..+++.++..|+|+++.++...+ +.+... ....++.|+.++++.+.....+..|..++|.|..
T Consensus 669 --~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~--~~~~p~--~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~ 742 (852)
T 4fdd_A 669 --ADFMPILGTNLNPEFISVCNNATWAIGEISIQMG--IEMQPY--IPMVLHQLVEIINRPNTPKTLLENTAITIGRLGY 742 (852)
T ss_dssp --HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHG--GGGGGG--THHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh--HhHHHH--HHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHH
Confidence 2367888888888889999999999999987531 222211 1568889999998766666778889999999986
Q ss_pred cccCCCccCCcccccccCCCchHHHHHhhhc-CChhHHHHHHHHHHHhhccCCc
Q 000145 842 TKQGLNFTYPPWAALAEVPSSIEPLVCCLAE-GPPPLQDKAIEILSRLCGDQPA 894 (2054)
Q Consensus 842 ~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~-~~~~vq~~Ai~iL~~L~~~~~~ 894 (2054)
.... ...|. .+.-+.++...+.. ++...+..|...|+.++..+|.
T Consensus 743 ~~~~--~~~~~------l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 743 VCPQ--EVAPM------LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HCHH--HHGGG------HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred hCHH--HhCcc------HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 4211 11100 12234555555654 5566799999999999998876
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=214.14 Aligned_cols=242 Identities=25% Similarity=0.289 Sum_probs=217.9
Q ss_pred CCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHH
Q 000145 516 GGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATIN 595 (2054)
Q Consensus 516 GaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip 595 (2054)
|+++.|+++|++++++++..|+++|.+++.+++..+..+.+.|+++.|+.++++++++++..++++|.+++...
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~------ 75 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP------ 75 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC------
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC------
Confidence 56889999999999999999999999999988888888999999999999999999999999999999997541
Q ss_pred HHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhh
Q 000145 596 QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL 675 (2054)
Q Consensus 596 ~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~I 675 (2054)
++ .+..+.+.|+++.|+.+++++++++++.|+++|.+|+..+++.+..+
T Consensus 76 ----------~~---------------------~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 124 (252)
T 4hxt_A 76 ----------DE---------------------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124 (252)
T ss_dssp ----------HH---------------------HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ----------hH---------------------HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11 12224467889999999999999999999999999997789999999
Q ss_pred hhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-C
Q 000145 676 ATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-D 754 (2054)
Q Consensus 676 v~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~ 754 (2054)
.+.|+++.|+++++++++.++..|+++|++++...+ ..+..+.+.|+++.|+.++.+++++++..|+++|+|++. +
T Consensus 125 ~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 201 (252)
T 4hxt_A 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD---EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 201 (252)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999986322 566778899999999999999999999999999999997 6
Q ss_pred hHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCC
Q 000145 755 PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 755 ~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~ 797 (2054)
+..+..+.+.|+++.|++++.++++.+|+.|+++|.||+...+
T Consensus 202 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 202 TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 7778889999999999999999999999999999999998653
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=214.56 Aligned_cols=241 Identities=24% Similarity=0.306 Sum_probs=220.8
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhH
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~ 511 (2054)
++++.|+.++.+++++++..++.+|.+++..+++.+..+.+.|+++.|++++++++..++..++++|++++..+++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 56889999999999999999999999999987778889999999999999999999999999999999999976889999
Q ss_pred HHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhch
Q 000145 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2054)
Q Consensus 512 I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~ 591 (2054)
+.+.|+++.|+++|++++++++..|+++|++|+.+++..+..+.+.|+++.|+.+++++++.++..++++|++++...+
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~- 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD- 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-
Confidence 9999999999999999999999999999999998788889989999999999999999999999999999999975311
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhh
Q 000145 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2054)
Q Consensus 592 ~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~ 671 (2054)
. ....+.+.|+++.|+.++++++++++..|+++|.+++..+++.
T Consensus 161 ---------------~---------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 204 (252)
T 4hxt_A 161 ---------------E---------------------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA 204 (252)
T ss_dssp ---------------H---------------------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH
T ss_pred ---------------H---------------------HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 1 1112345788999999999999999999999999999888889
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 000145 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRP 709 (2054)
Q Consensus 672 r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s 709 (2054)
+..+.+.|+++.|+++++++++.++..|+++|.|+...
T Consensus 205 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 205 IKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999973
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=213.60 Aligned_cols=240 Identities=21% Similarity=0.235 Sum_probs=215.1
Q ss_pred ccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
...+.++.++++++++++..|+++|+++...+++++..+.+.|+++.|+++|+++++.++..|+++|++++.++++.+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45789999999999999999999998876656778888999999999999999999999999999999999988889999
Q ss_pred HHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhh
Q 000145 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGS 633 (2054)
Q Consensus 554 I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l 633 (2054)
+.+.|+++.|+.+++++++.++..++++|+|++...+ .....+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-------------------------------------~~~~~~ 134 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-------------------------------------EQIQAV 134 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-------------------------------------HHHHHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCc-------------------------------------hHHHHH
Confidence 9999999999999999999999999999999975421 111224
Q ss_pred hcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc
Q 000145 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
.+.|+++.|+.+++++++++++.|+++|.+|+..+++.+..+.+.|+++.|+++++++++.++..|+++|++++...+
T Consensus 135 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-- 212 (252)
T 4db8_A 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN-- 212 (252)
T ss_dssp HHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCH--
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCH--
Confidence 467899999999999999999999999999998788888889999999999999999999999999999999986322
Q ss_pred cchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 714 TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 714 d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
..+..+.+.|+++.|+.++.++++++++.|+++|+||+.
T Consensus 213 -~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 213 -EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp -HHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred -HHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 577788999999999999999999999999999999974
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=214.01 Aligned_cols=240 Identities=18% Similarity=0.197 Sum_probs=214.7
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhH
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA 511 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~ 511 (2054)
...+.++.++.++++++|..++.+|.++...+.+.+..+.+.|+++.|+++++++++.++..++++|++++.++++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 45788999999999999999999998766555677888899999999999999999999999999999999877889999
Q ss_pred HHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhch
Q 000145 512 ITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS 591 (2054)
Q Consensus 512 I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~ 591 (2054)
+.+.|+++.|+++|+++++.+++.|+++|++|+.+.+.....+.+.|+++.|+.+++++++.++..++++|++++...+
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~- 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN- 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh-
Confidence 9999999999999999999999999999999998766554778899999999999999999999999999999975411
Q ss_pred hhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhh
Q 000145 592 ATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDI 671 (2054)
Q Consensus 592 ~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~ 671 (2054)
+ ....+.+.|+++.|+.+++++++++++.|+++|.+|+..+++.
T Consensus 171 ---------------~---------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 214 (252)
T 4db8_A 171 ---------------E---------------------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 214 (252)
T ss_dssp ---------------H---------------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH
T ss_pred ---------------H---------------------HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 1 1112345789999999999999999999999999999878899
Q ss_pred hhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 672 CGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 672 r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+..+.+.|+++.|+++++++++.++..|+++|.+|+.
T Consensus 215 ~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 215 KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999974
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.3e-18 Score=215.75 Aligned_cols=569 Identities=13% Similarity=0.109 Sum_probs=382.6
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC
Q 000145 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206 (2054)
Q Consensus 127 Ip~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e 206 (2054)
|..|+..|.++++++|..|++.|..++..- . .... ....+|.|...+ + .+..++..+..+|..++..-.
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~---~---~~~~-~~~l~~~L~~~~-d---~~~~vr~~~~~~L~~~~~~~~ 80 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALAL---G---VERT-RSELLPFLTDTI-Y---DEDEVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHS---C---HHHH-HHTHHHHHHHTC-C---CCHHHHHHHHHHHTTCSGGGT
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHh---C---HHHH-HHHHHHHHHHhc-C---CcHHHHHHHHHHHHHHHhccC
Confidence 678888899999999999999999887521 1 1111 224677777665 2 235688888888887765311
Q ss_pred chhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000145 207 GYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEAL 286 (2054)
Q Consensus 207 ~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nL 286 (2054)
+. . ....-++.|..++.++++.++..++.+|.+++...+. .......++.+..+.. +.+...|..+..++..+
T Consensus 81 ~~-~--~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---~~~~~~l~~~l~~l~~-~~~~~~R~~a~~~l~~~ 153 (588)
T 1b3u_A 81 GP-E--YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAG-GDWFTSRTSACGLFSVC 153 (588)
T ss_dssp SG-G--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHT-CSSHHHHHHHGGGHHHH
T ss_pred cH-H--HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHH
Confidence 11 0 1112355566666777888999999999888843221 1111122333333333 33444555444444443
Q ss_pred hhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHH
Q 000145 287 SSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIG 366 (2054)
Q Consensus 287 s~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~Lg 366 (2054)
......
T Consensus 154 ~~~~~~-------------------------------------------------------------------------- 159 (588)
T 1b3u_A 154 YPRVSS-------------------------------------------------------------------------- 159 (588)
T ss_dssp TTTSCH--------------------------------------------------------------------------
T ss_pred HHhcCH--------------------------------------------------------------------------
Confidence 332000
Q ss_pred HHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCH
Q 000145 367 ALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATA 446 (2054)
Q Consensus 367 aL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~ 446 (2054)
.....+.+.+..++++.+. .+|..++.+++.++..... .......++.+..++.+.+.
T Consensus 160 -------------------~~~~~l~~~l~~l~~d~~~-~VR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~~~d~~~ 217 (588)
T 1b3u_A 160 -------------------AVKAELRQYFRNLCSDDTP-MVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQD 217 (588)
T ss_dssp -------------------HHHHHHHHHHHHHHTCSCH-HHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCH
T ss_pred -------------------HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHhcH--HhHHHHHHHHHHHHhcCCcH
Confidence 0001223444455554443 4888888888887543211 11234567788888888889
Q ss_pred HHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh
Q 000145 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE 526 (2054)
Q Consensus 447 evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~ 526 (2054)
.++..++.+|..++...+.. ......+|.+.+++++++..+|..++.+|..++...+. .......++.+.++++
T Consensus 218 ~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~ 291 (588)
T 1b3u_A 218 SVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMK 291 (588)
T ss_dssp HHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhC
Confidence 99999999998887642211 11234677888888888899999999999999874222 1123346788899999
Q ss_pred cCCHHHHHHHHHHHHHHhcCCh-hHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----hhhHHHHHHH
Q 000145 527 AGSQKAREVAAHVLWILCCHSE-DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----SATINQLLAL 600 (2054)
Q Consensus 527 s~s~~Vre~AA~aL~nLa~~sd-~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-----~~~Ip~Lv~L 600 (2054)
++++.+|..++.+|..++..-. ..+....-...++.+..++++.++.+|..++++|..++..-. ...+|.+..+
T Consensus 292 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~ 371 (588)
T 1b3u_A 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQ 371 (588)
T ss_dssp CSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence 9999999999999999976322 111111124567888889999999999999999999875421 3467888999
Q ss_pred hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCC
Q 000145 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEI 680 (2054)
Q Consensus 601 L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~ 680 (2054)
+++++++++..+..+++.+......... ....++.+..++++.++.+|..++.++..++..-.. .......
T Consensus 372 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~------~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l 442 (588)
T 1b3u_A 372 LKDECPEVRLNIISNLDCVNEVIGIRQL------SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDEKL 442 (588)
T ss_dssp HTCSCHHHHHHHHTTCHHHHHHSCHHHH------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCHHH
T ss_pred hCCCchHHHHHHHHHHHHHHHhcCHHHH------HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH---HHHHHHH
Confidence 9999999999999888887654332211 123578888899999999999999999998752111 1223356
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHH
Q 000145 681 VNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAE 760 (2054)
Q Consensus 681 V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~ 760 (2054)
++.+.+++++.+..+|..|+.+++.+...... ......+++.|..++.+.+..+|..++.+++.++.. ....
T Consensus 443 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~------~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~--~~~~ 514 (588)
T 1b3u_A 443 NSLCMAWLVDHVYAIREAATSNLKKLVEKFGK------EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV--CGQD 514 (588)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH------HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh--cCHH
Confidence 78889999999999999999999999862211 112345788888888889999999999999999742 1112
Q ss_pred HHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000145 761 VLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2054)
Q Consensus 761 Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La 840 (2054)
......++.|.+++.+.++.+|..+++++++++..- +... ......+.|..++. +.+...+..|..+++.+.
T Consensus 515 ~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~--~~~~----~~~~~~p~l~~l~~--d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 515 ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPIL--DNST----LQSEVKPILEKLTQ--DQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGS--CHHH----HHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHh--chhh----hHHHHHHHHHHHcC--CCchhHHHHHHHHHHHhh
Confidence 234568899999999999999999999999999743 1211 11234455556543 345567888988888764
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.8e-18 Score=217.15 Aligned_cols=569 Identities=15% Similarity=0.099 Sum_probs=391.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHH
Q 000145 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMK 165 (2054)
Q Consensus 86 Vp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re 165 (2054)
+..|+..|+++++.+|..|+..|..++....... .....++.|...+ ++++++|..++.+|..+...-. ...
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~--~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~--~~~--- 83 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVG--GPE--- 83 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH--HHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGT--SGG---
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHH--HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccC--cHH---
Confidence 7788899999999999999999988753211110 1124566666665 5688999999999998774210 110
Q ss_pred HHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHh
Q 000145 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245 (2054)
Q Consensus 166 ~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~ 245 (2054)
.....++.|..++.++ +..++..+..+|.+++...... ......++.+..+..+++..+|..++.++..++.
T Consensus 84 --~~~~ll~~L~~l~~~~---~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~ 155 (588)
T 1b3u_A 84 --YVHCLLPPLESLATVE---ETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP 155 (588)
T ss_dssp --GGGGGHHHHHHHTTSS---CHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT
T ss_pred --HHHHHHHHHHHHHhCc---hHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 1234677777766543 4679999999999999865432 1122235666666677788899999999988773
Q ss_pred hcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhh
Q 000145 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQA 325 (2054)
Q Consensus 246 ~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~ 325 (2054)
..+ .......++.+..++. +.+..+|..+..++..+....... ....
T Consensus 156 ~~~----~~~~~~l~~~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~~---~~~~------------------------- 202 (588)
T 1b3u_A 156 RVS----SAVKAELRQYFRNLCS-DDTPMVRRAAASKLGEFAKVLELD---NVKS------------------------- 202 (588)
T ss_dssp TSC----HHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTSCHH---HHHH-------------------------
T ss_pred hcC----HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhcHH---hHHH-------------------------
Confidence 221 1122345566666665 567788888888877776531000 0000
Q ss_pred hhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChh
Q 000145 326 LQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405 (2054)
Q Consensus 326 lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e 405 (2054)
.+.+.+..++++.+.
T Consensus 203 ----------------------------------------------------------------~l~~~l~~~~~d~~~- 217 (588)
T 1b3u_A 203 ----------------------------------------------------------------EIIPMFSNLASDEQD- 217 (588)
T ss_dssp ----------------------------------------------------------------THHHHHHHHHTCSCH-
T ss_pred ----------------------------------------------------------------HHHHHHHHHhcCCcH-
Confidence 111333334443332
Q ss_pred hHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcC
Q 000145 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGL 485 (2054)
Q Consensus 406 ~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s 485 (2054)
.+|..++.+++.++.... ........++.+..++.+.+..++..++.+|..++..... .......++.+.+++++
T Consensus 218 ~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d 292 (588)
T 1b3u_A 218 SVRLLAVEACVNIAQLLP--QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKD 292 (588)
T ss_dssp HHHTTHHHHHHHHHHHSC--HHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCC
Confidence 366677777776643211 1112234567777888888899999999999988764211 11223467889999999
Q ss_pred CChhhhHHHHHHHHHHhhhccch-hhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHH
Q 000145 486 SSEQHQEYAVQLIAILTEQVDDS-KWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2054)
Q Consensus 486 ~d~~Vr~~Aa~aL~nLs~~s~e~-r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV 564 (2054)
+++.+|..++.+|..++...... +....-...+|.+.+++++.++.+|..++++|..++..-.. .. .....++.+.
T Consensus 293 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~l~p~l~ 369 (588)
T 1b3u_A 293 CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN-TIEHLLPLFL 369 (588)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--HH-HHHHTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--hH-HHHHHHHHHH
Confidence 99999999999999998743321 11122234567788889999999999999999988642111 11 1234678888
Q ss_pred HhhccCChhHHHHHHHHHHHHHHhhc-----hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccch
Q 000145 565 WLLKSGGPKGQDASAMALTKLIRAAD-----SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2054)
Q Consensus 565 ~LLkS~~~evq~~AA~AL~nLs~~~e-----~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI 639 (2054)
.+++++++++|..+..+|..+..... ...+|.+.+++++.+..++..+..+++.++...... ......+
T Consensus 370 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~ 443 (588)
T 1b3u_A 370 AQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE------FFDEKLN 443 (588)
T ss_dssp HHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG------GCCHHHH
T ss_pred HHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH------HHHHHHH
Confidence 99999999999999999998876421 357788999999988899999999998886432221 1122357
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHH
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMS 719 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~ 719 (2054)
+.+..++++++..+|+.|+.++..++....+ ......+++.+..++++.+..+|..++.+++.++.. ....
T Consensus 444 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~------~~~~ 514 (588)
T 1b3u_A 444 SLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV------CGQD 514 (588)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH------HHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh------cCHH
Confidence 8888889999999999999999999763221 112346788888888889999999999999999852 1112
Q ss_pred HHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 000145 720 YIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2054)
Q Consensus 720 I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~ 793 (2054)
.....+++.|..++++.+++||..++.+|+.+...-+ .....+..+|.|..++.+.++++|..|.+++..+.
T Consensus 515 ~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~--~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 515 ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD--NSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC--HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc--hhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 2334588999999999999999999999999975211 11223456777888888889999999999998764
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-16 Score=214.84 Aligned_cols=682 Identities=15% Similarity=0.120 Sum_probs=429.9
Q ss_pred cCCCHHHHHHHHHHHHHHHhh-----cHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcC
Q 000145 51 NMSSPQERELITMRILTIAKA-----KKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGG 125 (2054)
Q Consensus 51 ssss~~ere~AL~~L~~La~~-----~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~G 125 (2054)
.+.+...|..|.-.|.+.... +++.+..| -+.++..|.++++.+|..++.++..+...+... .-.+
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~i------k~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~---~wp~ 128 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFI------KSECLNNIGDSSPLIRATVGILITTIASKGELQ---NWPD 128 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHH------HHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT---TCTT
T ss_pred CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHH------HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc---ccHH
Confidence 456677888888888887643 33444444 345666788889999999999999886532110 1126
Q ss_pred ChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHH-------HcCcHHHHHHhhCCCCCCChhHHHHHHHHH
Q 000145 126 CIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFV-------TEGVVPTLWDQLNPKNKQDNVVQGFVTGAL 198 (2054)
Q Consensus 126 aIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv-------~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL 198 (2054)
.++.|++.+.++++.+++.++.+|..++... ...+. -...+|.+++.+.+. +..++..|+++|
T Consensus 129 ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-------~~~~~~~~~~~~~~~il~~l~~~l~~~---~~~vR~~A~~aL 198 (852)
T 4fdd_A 129 LLPKLCSLLDSEDYNTCEGAFGALQKICEDS-------AEILDSDVLDRPLNIMIPKFLQFFKHS---SPKIRSHAVACV 198 (852)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-------TTHHHHCSSSSCHHHHHHHHTTTTTCS---SHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-------HHHhchhhhcchHHHHHHHHHHHhcCC---CHHHHHHHHHHH
Confidence 7899999999999999999999999999621 11111 123677777777644 367899999999
Q ss_pred HHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHH
Q 000145 199 RNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRAS 278 (2054)
Q Consensus 199 ~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~ 278 (2054)
.++......... -.-...++.+...+.+++++++..++.+|..++...++...... .+.++.++..++ +.+..++..
T Consensus 199 ~~~~~~~~~~~~-~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~-~~~~~vr~~ 275 (852)
T 4fdd_A 199 NQFIISRTQALM-LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQ-DQDENVALE 275 (852)
T ss_dssp HTTTTTTCHHHH-TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHT-CSSHHHHHH
T ss_pred HHHHhcccHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHcc-CCcHHHHHH
Confidence 988865432110 00113567888888888999999999999999965443222222 246777888877 467789999
Q ss_pred HHHHHHHHhhccHHHHHHHHh--cCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCC
Q 000145 279 AADALEALSSKSIKAKKAVVA--ADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPR 356 (2054)
Q Consensus 279 Aa~aL~nLs~~s~e~Rk~I~e--aggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~ 356 (2054)
+...+..++.. ...++.+.. ...++.++..+.....+.. +..+. +..-..-.+.....+
T Consensus 276 a~e~l~~l~~~-~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~-----------------~~~~d-~~ed~~~dd~~~~~~ 336 (852)
T 4fdd_A 276 ACEFWLTLAEQ-PICKDVLVRHLPKLIPVLVNGMKYSDIDII-----------------LLKGD-VEGGSGGDDTISDWN 336 (852)
T ss_dssp HHHHHHHHTTS-TTHHHHHTTTHHHHHHHHHHHTSCCHHHHH-----------------HHHC-------------CCCC
T ss_pred HHHHHHHHhcc-hhHHHHHHHHHHHHHHHHHHHcCCcHhHHH-----------------HhcCC-cccccccccccccch
Confidence 99999888764 333332211 1233444444422110000 00000 000000000000011
Q ss_pred chhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHH
Q 000145 357 LAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKV 436 (2054)
Q Consensus 357 ~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~ 436 (2054)
.....+..++.++... . ...+ ..+.+.+..++.+.+ ..+|..++.+++.+.....-.-.-.-.+.++.
T Consensus 337 vr~~a~~~L~~la~~~---~------~~~~--~~l~~~l~~~l~~~~-~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~ 404 (852)
T 4fdd_A 337 LRKCSAAALDVLANVY---R------DELL--PHILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLPELIPH 404 (852)
T ss_dssp HHHHHHHHHHHHHHHH---G------GGGH--HHHHHHHHHHHTCSS-HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---c------HHHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 1223334444444321 0 0111 134577777777765 45999999999999764421111122467889
Q ss_pred HHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhC
Q 000145 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516 (2054)
Q Consensus 437 LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aG 516 (2054)
++.++.+.++.++..++.++.+++...........-.+.++.|++.++++++.+|..|+++|.+++...... ....-.+
T Consensus 405 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ 483 (852)
T 4fdd_A 405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPYLAY 483 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGGHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHhHHHH
Confidence 999999999999999999999988642211111122356788999998889999999999999998743322 1112234
Q ss_pred CCchHhhhhhcCCHHHHHHHHHHHHHHhcCCh--h-HHHHHHHcCChHHHH---HhhccCChhHHHHHHHHHHHHHHhhc
Q 000145 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSE--D-IRACVESAGAVPAFL---WLLKSGGPKGQDASAMALTKLIRAAD 590 (2054)
Q Consensus 517 aIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd--~-~r~~I~e~GaI~aLV---~LLkS~~~evq~~AA~AL~nLs~~~e 590 (2054)
.++.|+.+++..+.+....+..++..++.... . ....+ ...++.++ ..+++.+++.+ .+..++..++....
T Consensus 484 ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~--~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g 560 (852)
T 4fdd_A 484 ILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI--QMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQ 560 (852)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHH--HHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHH--HHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHh
Confidence 56777778887777777677777777753100 0 01111 12355555 34456667764 67788888776532
Q ss_pred hh-------hHHHHHHHhcC-----------------CCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHh
Q 000145 591 SA-------TINQLLALLLG-----------------DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVL 646 (2054)
Q Consensus 591 ~~-------~Ip~Lv~LL~~-----------------~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LL 646 (2054)
.. .++.++.+++. .+.+.+..+.++++.+...... .....+.+.+.++.+...+
T Consensus 561 ~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~~~~~l~~~l 638 (852)
T 4fdd_A 561 SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCM 638 (852)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG--GGHHHHHTCCHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH--hHHHHhcCCcHHHHHHHHh
Confidence 22 22333333321 1344666677788877653321 1122233467889999999
Q ss_pred ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCCh
Q 000145 647 NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDV 726 (2054)
Q Consensus 647 ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV 726 (2054)
.+.++++|+.+..++..++...++.....+. ..++.+.+.+..+++.++..|+++++.++..... .... .-..++
T Consensus 639 ~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~-~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~--~~~p--~~~~il 713 (852)
T 4fdd_A 639 QDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGI--EMQP--YIPMVL 713 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG--GGGG--GTHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH--hHHH--HHHHHH
Confidence 8889999999999999998644433333222 3778888888888889999999999999863221 2222 224578
Q ss_pred hhHHhhhhcC--CHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhhcCC
Q 000145 727 KPLIKLAKTS--SIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 727 ~~Lv~LL~s~--d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s-~~~evr~~Aa~AL~nL~~~~~ 797 (2054)
++|+.++++. ...+++.++.+++.|+. +|+.-.. .-...++++.+.|.. ++.+.++.|...++.+....|
T Consensus 714 ~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~-~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p 787 (852)
T 4fdd_A 714 HQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAP-MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 787 (852)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGG-GHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCc-cHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhCh
Confidence 8899998874 46899999999999986 4432110 023456777777764 567789999999999998765
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-14 Score=197.99 Aligned_cols=687 Identities=12% Similarity=0.109 Sum_probs=403.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHH-HHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchh
Q 000145 39 STVAKFLEQLHANMSSPQERELITMRILTIAKAKKEA-RLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDL 117 (2054)
Q Consensus 39 ~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~a-r~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~ 117 (2054)
..+.++++.+.+ .++..|..|...|.+....+... ..... ...++.+++.|.+.++.+|..|+..|+.+...-..
T Consensus 6 ~~l~~lL~~l~s--~d~~~R~~A~~~L~~~l~~~~~~~~~~~~--~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~ 81 (1230)
T 1u6g_C 6 YHISNLLEKMTS--SDKDFRFMATNDLMTELQKDSIKLDDDSE--RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE 81 (1230)
T ss_dssp HHHHHHHHHTTC--SSHHHHHHHHHHHHHHTSSSCCSCCTTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHhcCC--CCHhHHHHHHHHHHHHHcccccCCChhHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH
Confidence 346677777643 56778999988888765432000 00000 13578889999999999999999999988753221
Q ss_pred HHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCCh--hHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHH
Q 000145 118 RLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDH--VGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVT 195 (2054)
Q Consensus 118 r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~--~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al 195 (2054)
. .....++.|+..|.++++.+|..|+.+|..++..... .. .....-.-...+|.|++.+.+. .+..++..++
T Consensus 82 ~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~-~~~~~~~~~~~~~~llp~L~~~l~~~--~~~~~~~~al 155 (1230)
T 1u6g_C 82 Y---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP-ASSGSALAANVCKKITGRLTSAIAKQ--EDVSVQLEAL 155 (1230)
T ss_dssp H---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------CCTHHHHHHHHHHHHHHHHSCC--SCHHHHHHHH
T ss_pred H---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC-cccccchHHHHHHHHHHHHHHHHcCC--CchHHHHHHH
Confidence 1 1123567888888888888999999999999863211 10 0000112234789999999742 2357899999
Q ss_pred HHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhH
Q 000145 196 GALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISV 275 (2054)
Q Consensus 196 ~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~V 275 (2054)
.+|..++......... .....++.+...+.++++.+|..++.+|..++...++ .+ -...++.++..+....+..+
T Consensus 156 ~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~ 230 (1230)
T 1u6g_C 156 DIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMST 230 (1230)
T ss_dssp HHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCS
T ss_pred HHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhH
Confidence 9999998532110000 1123567788888888899999999999999843322 11 22467888888864444456
Q ss_pred HHHHHHHHHHHhhccHHHHHHHH--hcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcC----c----hhHH
Q 000145 276 RASAADALEALSSKSIKAKKAVV--AADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGG----M----PALV 345 (2054)
Q Consensus 276 r~~Aa~aL~nLs~~s~e~Rk~I~--eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGg----i----s~lI 345 (2054)
+..+..++..+....+. .+. -...++.++..+.+.+.+ +++.+..++..+... + +.++
T Consensus 231 r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~---------vR~~a~~~l~~l~~~~~~~~~~~l~~li 298 (1230)
T 1u6g_C 231 TRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDE---------LREYCIQAFESFVRRCPKEVYPHVSTII 298 (1230)
T ss_dssp CTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTT---------THHHHHHHHHHHHHCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHH---------HHHHHHHHHHHHHHHChHHHHHhHHHHH
Confidence 77788888887663221 121 145677788877765433 556666666665421 1 2233
Q ss_pred HHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcCh-hh
Q 000145 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI-FL 424 (2054)
Q Consensus 346 ~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~-~~ 424 (2054)
+.+.+.+...... .. + ....... ..+ .....+...+ ..... . ........+|..++.++..+.... ..
T Consensus 299 ~~ll~~l~~d~~~-~~-~--~d~~~~~-~~~--~~~~~~~~~~--~~~~~-~-~~~d~~~~vR~~A~~~l~~l~~~~~~~ 367 (1230)
T 1u6g_C 299 NICLKYLTYDPNY-NY-D--DEDEDEN-AMD--ADGGDDDDQG--SDDEY-S-DDDDMSWKVRRAAAKCLDAVVSTRHEM 367 (1230)
T ss_dssp HHHTTCCCCC-----------------------------------------------CTTHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhCCCCCC-CC-c--ccccccc-ccc--ccccccchhh--ccccc-c-cccccCHHHHHHHHHHHHHHHHhchhH
Confidence 4444443321110 00 0 0000000 000 0000000000 00000 0 011122347888999998886421 11
Q ss_pred hHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCcc----------------chhhh--hccccHHHHHhhhcCC
Q 000145 425 SQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG----------------IWEAI--GKREGIQLLISLLGLS 486 (2054)
Q Consensus 425 ~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e----------------~r~~I--ve~ggIp~LV~LL~s~ 486 (2054)
-.. .-...++.++..+.+.+++++..++.++..+...... ....+ .-...++.+.+.++++
T Consensus 368 ~~~-~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~ 446 (1230)
T 1u6g_C 368 LPE-FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 446 (1230)
T ss_dssp HHH-HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCS
T ss_pred HHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccC
Confidence 111 1124556677777777888998888888776542110 00000 0112345566668888
Q ss_pred ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCC--HHHHHHHHHHHHHHhcC-Chh-HHHHHHHcCChHH
Q 000145 487 SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGS--QKAREVAAHVLWILCCH-SED-IRACVESAGAVPA 562 (2054)
Q Consensus 487 d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s--~~Vre~AA~aL~nLa~~-sd~-~r~~I~e~GaI~a 562 (2054)
+..+|..++.+|..+....++.-.. .-...++.+.+.|++.. ..++.+++..+..+... ... ....+ ...++.
T Consensus 447 ~~~vr~~~~~~L~~l~~~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--~~llp~ 523 (1230)
T 1u6g_C 447 SVKTRQCCFNMLTELVNVLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV--QALVPP 523 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--TTTHHH
T ss_pred CHHHHHHHHHHHHHHHHHchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH--HHHHHH
Confidence 8889999999999988753321111 11234566777777764 58999999999988642 222 23333 568899
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHHhhc--------------hhhHHHHHHHh--cCCCcchHHHHHHHHHHHHhhhcch
Q 000145 563 FLWLLKSGGPKGQDASAMALTKLIRAAD--------------SATINQLLALL--LGDSPSSKAHVIKVLGHVLTMALQE 626 (2054)
Q Consensus 563 LV~LLkS~~~evq~~AA~AL~nLs~~~e--------------~~~Ip~Lv~LL--~~~~~~V~~~a~~AL~~La~~~~~~ 626 (2054)
|+..+.+.++.++..+..++..+...-. ...++.++..+ .+.+++++..+..+++.++......
T Consensus 524 L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~ 603 (1230)
T 1u6g_C 524 VVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603 (1230)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch
Confidence 9999999888888888889988875421 24567778888 5677789999999999987543221
Q ss_pred HHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000145 627 DLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGAL 706 (2054)
Q Consensus 627 d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nL 706 (2054)
.... -...++.|...+. ++.+|..++.++..++..........+-..+++.|...+++.+..+|..++.++..+
T Consensus 604 --~~~~--~~~~l~~L~~~l~--~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l 677 (1230)
T 1u6g_C 604 --LGSD--LPNTLQIFLERLK--NEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDIL 677 (1230)
T ss_dssp --CCTH--HHHHHHHHHHHTT--SSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred --hhhh--HHHHHHHHHHHhc--cchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 0000 0123455555554 345788889999988753211111223356778888899999999999999999999
Q ss_pred hCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHHHcCC
Q 000145 707 SRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD-PDIAAEVLLEDVVSALTRVLAEG 777 (2054)
Q Consensus 707 s~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~-~e~r~~Iv~~g~I~~LV~LL~s~ 777 (2054)
....+. ......+. ..+..+..++.+.|.++...+..+|+.+... +..- .-..+..++.++.++.+.
T Consensus 678 ~~~~~~--~~~~~~v~-~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~-~~~~~~~l~~~~~~l~~~ 745 (1230)
T 1u6g_C 678 IKNYSD--SLTAAMID-AVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSL-SKISGSILNELIGLVRSP 745 (1230)
T ss_dssp HHHCCT--TCCHHHHH-HHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGG-GGTTTTTHHHHHHHHTCT
T ss_pred Hhcccc--cCCHHHHH-HHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhH-HHhHHhHHHHHHHHHcCc
Confidence 873322 11000000 0122223445667888888999999999752 2211 012345566666666543
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=185.58 Aligned_cols=199 Identities=20% Similarity=0.249 Sum_probs=179.8
Q ss_pred cccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHH
Q 000145 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2054)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~ 552 (2054)
.++.+.|+.+++++++.++..|+++|++++..+++.+..+.+.|+++.|+++|+++++.++..|+++|++++.+++..+.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 46788999999999999999999999999987788889999999999999999999999999999999999988888889
Q ss_pred HHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
.+.+.|+++.|+.+++++++.++..++++|.|++...+ + ....
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~----------------~---------------------~~~~ 133 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN----------------E---------------------QIQA 133 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH----------------H---------------------HHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH----------------H---------------------HHHH
Confidence 99999999999999999999999999999999974311 1 0112
Q ss_pred hhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 633 l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+.+.|+++.|+.+++++++++++.|+++|.+++..+++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus 134 ~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 3457899999999999999999999999999999779999999999999999999999999999999999999974
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-13 Score=190.68 Aligned_cols=1067 Identities=15% Similarity=0.150 Sum_probs=580.0
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHH-HHHH
Q 000145 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIK-AKKA 296 (2054)
Q Consensus 218 I~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e-~Rk~ 296 (2054)
+..++..+.++++++|..|..-|.+....+............++.++..+. +.+..+|..|..+|..+....+. ...
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~~~~- 85 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQVE- 85 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHHHHH-
Confidence 567777788889999999988888765322111111122357788888887 57889999999999998865322 111
Q ss_pred HHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhh
Q 000145 297 VVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFE 376 (2054)
Q Consensus 297 I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~ 376 (2054)
..++.|++.+.+++.. +|..+..+|..+....++. ..
T Consensus 86 ----~i~~~Ll~~l~d~~~~---------vR~~a~~~L~~i~~~l~~~-----------~~------------------- 122 (1230)
T 1u6g_C 86 ----TIVDTLCTNMLSDKEQ---------LRDISSIGLKTVIGELPPA-----------SS------------------- 122 (1230)
T ss_dssp ----HHHHHHHHHTTCSSSH---------HHHHHHHHHHHHHHHCC----------------------------------
T ss_pred ----HHHHHHHHHhcCCcHH---------HHHHHHHHHHHHHHhCCCc-----------cc-------------------
Confidence 2345666666665433 4445555555543211000 00
Q ss_pred cCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcC--hhhhHHHhhcchHHHHHHHhccCCHHHHHHHHH
Q 000145 377 QKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN--IFLSQWVSHAEAKKVLIGLITMATADVREYLIL 454 (2054)
Q Consensus 377 ~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n--~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~ 454 (2054)
...........+.+.|...+....+..++..++.+++.++.. ..+.. .....++.++..+.+.+..++..++.
T Consensus 123 ---~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~ 197 (1230)
T 1u6g_C 123 ---GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTII 197 (1230)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 000000011244577777777433445899999999988642 12211 11345677888888888999999999
Q ss_pred HHHHhcccCccchhhhhccccHHHHHhhhcCC-ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHH
Q 000145 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAR 533 (2054)
Q Consensus 455 AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vr 533 (2054)
++..++....+. +. ...++.+++.+... +...+..++.++..++...++ +..-.-...++.+++.+.+.++++|
T Consensus 198 al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~l~~l~~~ll~~l~d~~~~vR 272 (1230)
T 1u6g_C 198 ALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELR 272 (1230)
T ss_dssp HHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTH
T ss_pred HHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 999998653221 11 23577788777644 346788889999998874332 1111113456677777778889999
Q ss_pred HHHHHHHHHHhcCCh-hHHHHHHHcCChHHHHHhhc-------------------------------------cCChhHH
Q 000145 534 EVAAHVLWILCCHSE-DIRACVESAGAVPAFLWLLK-------------------------------------SGGPKGQ 575 (2054)
Q Consensus 534 e~AA~aL~nLa~~sd-~~r~~I~e~GaI~aLV~LLk-------------------------------------S~~~evq 575 (2054)
+.+..++..++.... ..+..+ ...++.++..++ +...++|
T Consensus 273 ~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR 350 (1230)
T 1u6g_C 273 EYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVR 350 (1230)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC------------------------------------CTTHHH
T ss_pred HHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHH
Confidence 999999988865321 111111 112333333221 1123568
Q ss_pred HHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc-----------------hHHHHh
Q 000145 576 DASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-----------------EDLVQK 631 (2054)
Q Consensus 576 ~~AA~AL~nLs~~~e-------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~-----------------~d~~~~ 631 (2054)
..++.+|..++.... ...++.++..+.+.+++++..+..++..+...... ......
T Consensus 351 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (1230)
T 1u6g_C 351 RAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQS 430 (1230)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHH
Confidence 889999998876321 23467777777888888998888888877643211 011111
Q ss_pred hhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH--HHHHHHHHHHHHhhCC
Q 000145 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ--MVATQSARALGALSRP 709 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~--~vr~~AA~AL~nLs~s 709 (2054)
. -...++.+...++++++.+|..++.+|..++...++.... .-...++.+...+.+.++ .++..++.++..+...
T Consensus 431 ~--l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~-~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 431 Q--VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQ-HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp H--TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGG-GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHS
T ss_pred H--hhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHH-HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHh
Confidence 1 1234556666688899999999999999998743322111 123567888888888754 8999999999988752
Q ss_pred CCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--Ch-------HHHHHHHhcCcHHHHHHHH--cCCC
Q 000145 710 TKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DP-------DIAAEVLLEDVVSALTRVL--AEGT 778 (2054)
Q Consensus 710 ~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~~-------e~r~~Iv~~g~I~~LV~LL--~s~~ 778 (2054)
... +.... .-...++.|+..+.+.+..++..++.++..++. .+ ..... ....++.++..+ .+.+
T Consensus 508 ~~~-~~~~~--~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~--~~~ll~~ll~~l~~~d~~ 582 (1230)
T 1u6g_C 508 HSP-QVFHP--HVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPY--IKDLFTCTIKRLKAADID 582 (1230)
T ss_dssp SCG-GGGHH--HHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH--HHHHHHHHHHHHSCSSSC
T ss_pred CCH-HHHHh--HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHH--HHHHHHHHHHHHhccCCC
Confidence 222 01211 224588889999999888898889999988862 11 11111 124677788888 6678
Q ss_pred HHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCccccccc
Q 000145 779 SEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAE 858 (2054)
Q Consensus 779 ~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~ 858 (2054)
+++|..|+.+++.|+.... +.+.... ...++.|...+.. ...+..++.+++.++...... ....|
T Consensus 583 ~~vr~~a~~~lg~L~~~~g--~~~~~~~--~~~l~~L~~~l~~----e~~r~~~~~al~~i~~~~~~~--~~~~~----- 647 (1230)
T 1u6g_C 583 QEVKERAISCMGQIICNLG--DNLGSDL--PNTLQIFLERLKN----EITRLTTVKALTLIAGSPLKI--DLRPV----- 647 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHTG--GGCCTHH--HHHHHHHHHHTTS----SSHHHHHHHHHHHHTTCSSCC--CCHHH-----
T ss_pred HHHHHHHHHHHHHHHHHhC--chhhhhH--HHHHHHHHHHhcc----chhHHHHHHHHHHHHhCcccc--chHHH-----
Confidence 9999999999999997641 2221110 2344445555532 234778888988887532110 00011
Q ss_pred CCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehhhhHHHHHhcccch
Q 000145 859 VPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHK 938 (2054)
Q Consensus 859 ~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~~~~~~i~~~k~~~ 938 (2054)
.+..++.|...+.+.++.++..++..|.+++...+... ..
T Consensus 648 ~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~----------------------------------------~~ 687 (1230)
T 1u6g_C 648 LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSL----------------------------------------TA 687 (1230)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC----------------------------------------CH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccC----------------------------------------CH
Confidence 12236667777778888899999999999887653200 00
Q ss_pred hhhHHHHhhcCCcHHHHHHHHHHhhhc-cCCCCCCcccccCCCccccccccccCCCCcCCCCCcchhhHHHHHHHHHhcc
Q 000145 939 KQSMDALDLSGYLKPLIYALVDMMKQN-SSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSF 1017 (2054)
Q Consensus 939 ~~~~~~L~~~g~~~~~i~~Lv~l~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~ 1017 (2054)
..+.. +.... .+....|.. ....++-.|+.+...
T Consensus 688 --------------~~v~~---~l~~ll~ll~~~D~~----------------------------~~~~~~~~L~~l~~~ 722 (1230)
T 1u6g_C 688 --------------AMIDA---VLDELPPLISESDMH----------------------------VSQMAISFLTTLAKV 722 (1230)
T ss_dssp --------------HHHHH---HHTTCGGGSCTTCHH----------------------------HHHHHHHHHHHHTTS
T ss_pred --------------HHHHH---HHHHHHhhcCcchHH----------------------------HHHHHHHHHHHHHHh
Confidence 00000 00000 000011100 112233333333332
Q ss_pred CCCCcchhhhccchHHHHHHhhccCCCC-cccccccchhHHHHHHHHHHccCcccccchhhhccHHHHHHHhcc-----c
Q 000145 1018 LRNNNVTVMEAGALEALSDKLASYTSNP-QAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRS-----D 1091 (2054)
Q Consensus 1018 ~~~~k~~~~e~g~~~~l~~~l~~~~~~~-q~~~~~~~~~~~~~~ll~~lf~~~~~~~~~~~~~~~~~l~~~l~~-----~ 1091 (2054)
.+..-.-. ---.+..+.+.+. ... |...-+. ...+++.+.++..- .+.-...++.|...+.. .
T Consensus 723 ~~~~~~~~-~~~~l~~~~~~l~---~~~~~~~~~~~-----l~~~~~~l~~~~~~--~~~~~~ll~~l~~~~~~~~~~~~ 791 (1230)
T 1u6g_C 723 YPSSLSKI-SGSILNELIGLVR---SPLLQGGALSA-----MLDFFQALVVTGTN--NLGYMDLLRMLTGPVYSQSTALT 791 (1230)
T ss_dssp CGGGGGGT-TTTTHHHHHHHHT---CTTCCHHHHHH-----HHHHHHHHHTTCCT--TCSHHHHHHHHSTTTTTC----C
T ss_pred CchhHHHh-HHhHHHHHHHHHc---CcccchHHHHH-----HHHHHHHHHhcCCC--CCCHHHHHHHHhccccCCCCccc
Confidence 22110000 0011222222221 100 1000000 00111222211000 00011111222111110 1
Q ss_pred chhhhHHHHHHHHHhhccCCccchhhhhccccchhhhhhhcccccCCchhhhhhhhhhcccCCcHHHHHhhhcccccccc
Q 000145 1092 EVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVG 1171 (2054)
Q Consensus 1092 ~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lf~~~~ir~~ 1171 (2054)
.+..|+.+|+.++.++...... .+ .++.. +..+ +++|+
T Consensus 792 ~~~~~~~~a~~i~~~~~~~~~~-----------~~--~~~~~----------~~~~---~~~~~---------------- 829 (1230)
T 1u6g_C 792 HKQSYYSIAKCVAALTRACPKE-----------GP--AVVGQ----------FIQD---VKNSR---------------- 829 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCC-----------SH--HHHTT----------TTTT---TTTTT----------------
T ss_pred cchhhHHHHHHHHHHHHhcchh-----------hH--HHHHH----------HHHH---hCCCC----------------
Confidence 3345788888877765421111 00 00000 0000 01110
Q ss_pred hhhhhhhhhHHHhccCCCCCCCChhHHHHHHHHhhcCCCcchhHHHhcchhhHHHHhhcCCCCcccHHHHHHHHHHhhcC
Q 000145 1172 STARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSN 1251 (2054)
Q Consensus 1172 ~~a~~~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~e~~~~~~l~k~ls~~~~~~~~~~~~~l~~~lf~~ 1251 (2054)
..+.....++..|-.+...-+-.. +....+.+.|+|+. +.++.+.+|+.-++.++.
T Consensus 830 ------------------~~~~~~~~~l~~l~~~g~~~~~~~----~~~l~~~~~~~l~~-~~~~Vr~aAa~aLg~l~~- 885 (1230)
T 1u6g_C 830 ------------------STDSIRLLALLSLGEVGHHIDLSG----QLELKSVILEAFSS-PSEEVKSAASYALGSISV- 885 (1230)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHHSCCCS----CTHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH-
T ss_pred ------------------ccHHHHHHHHHHHHHhcccCCCcc----cccHHHHHHHHhCC-CCHHHHHHHHHHhHHHhc-
Confidence 001111122222222211001000 11235677777764 688899999998888872
Q ss_pred cccccchhhhhhHHHHHHHHHcCCCchhhhHHHHHhhhcccccccch-HhhhccchhHHHhhccchhHHHHHHHHHHHhh
Q 000145 1252 PDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDS-DLAGQAVPPLVDMLSAASECELEVALVALVKL 1330 (2054)
Q Consensus 1252 ~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~-~~a~~~~~~l~~~~~~~~~~~~~~~~~al~kl 1330 (2054)
.+.. .-+..+...+..+ ...||....||.+.+......+. ..+.+...+|+..+....+.....+-.+|=+|
T Consensus 886 ----~~~~--~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l 958 (1230)
T 1u6g_C 886 ----GNLP--EYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKL 958 (1230)
T ss_dssp ----HTHH--HHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHH
T ss_pred ----cCHH--HHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhh
Confidence 1111 1244555556554 56799999999998864221111 12234455666666655555554555555555
Q ss_pred ccCCCccccchhhcccchHHHHHHHhccCCcHHHHHHHHHHHHHHhcCcccccCccccchhhhhhhhhcCChhHHHHHHH
Q 000145 1331 TSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAV 1410 (2054)
Q Consensus 1331 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~a~l~~~l~~~~~i~~~~~a~~~~~pli~l~~s~~~~~~~~~~ 1410 (2054)
..-.+ ...+..+.+.|.+++ ...+..+...++.++++..=...+.-..++.||+..|+.+...+.+++.
T Consensus 959 ~~~~~----------~~l~p~l~~~l~~~~-~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~ 1027 (1230)
T 1u6g_C 959 TLIDP----------ETLLPRLKGYLISGS-SYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVAL 1027 (1230)
T ss_dssp HHSSG----------GGTHHHHTTTSSSSC-HHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHH
T ss_pred hccCh----------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 22221 345666666666644 4467666666666665432111122356788999999999999999999
Q ss_pred HHHHhhhhhhhhhHhhh--hcchhhhhHhhhc------------------ccchhHHHHHHHHHHHhhcCCCchhHHHhh
Q 000145 1411 CAFERLLDDEQQVELVE--GYDVVDLLVRLVS------------------GTNHRLVEATVCALIKLGKDRTPRKLQMVK 1470 (2054)
Q Consensus 1411 ~~~~~ll~~e~~~~~~~--~~~~v~~lv~~~~------------------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~ 1470 (2054)
.+|..+..... +.+. -...+.+|+.... -.+..+.+.|..|+-++=...+. ++++
T Consensus 1028 ~~l~~~~~~~~--~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~-~i~~-- 1102 (1230)
T 1u6g_C 1028 VTFNSAAHNKP--SLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLD-RLDI-- 1102 (1230)
T ss_dssp HHHHHHHHHCG--GGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCS-SSCH--
T ss_pred HHHHHHHhcCh--HhHHHHHHHHHHHHHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHH-hCCH--
Confidence 99998764322 1111 1224444444432 23347899999999999887665 3332
Q ss_pred hhhhhHhhhhCCCCchHHHHHHHHHHHhhhccchhcccccchhccchhhhhhhCC----------CCCchhHHHHHHHHH
Q 000145 1471 AGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQP----------DFSLWGQHSALQALV 1540 (2054)
Q Consensus 1471 ~g~i~~~~~~~~~~p~~l~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~~al~~l~ 1540 (2054)
.-++.++++=+|.-.+-=--+..-|.|+.+.+.. +..+..-..|+|+--++... +-...-++++|.++.
T Consensus 1103 ~~~~~~~~~gl~d~~di~~~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~ 1181 (1230)
T 1u6g_C 1103 FEFLNHVEDGLKDHYDIKMLTFLMLVRLSTLCPS-AVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVA 1181 (1230)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCH-HHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCchHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHHHH
Confidence 2355555555566311111122223333333311 12245567778887665432 123456789999999
Q ss_pred HhhcCCcccc
Q 000145 1541 NILEKPQSLV 1550 (2054)
Q Consensus 1541 ~~~e~~~~~~ 1550 (2054)
-+...|.+..
T Consensus 1182 ~l~~~~~~~~ 1191 (1230)
T 1u6g_C 1182 ALLTIPEAEK 1191 (1230)
T ss_dssp HTTSSCSCSS
T ss_pred HHHhCCCccc
Confidence 8888886654
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.2e-14 Score=188.38 Aligned_cols=740 Identities=13% Similarity=0.081 Sum_probs=447.6
Q ss_pred HHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhccCc-
Q 000145 40 TVAKFLEQL-HANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCKDE- 115 (2054)
Q Consensus 40 ~V~qlIe~L-~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL~~Ls~~e- 115 (2054)
.+.+++... .+ .+...|..|-..|..+...+ ..|....|..++.+. ++.+|..|+.+|.+.....
T Consensus 5 ~l~~~L~~~~~s--~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w 73 (861)
T 2bpt_A 5 EFAQLLENSILS--PDQNIRLTSETQLKKLSNDN---------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKD 73 (861)
T ss_dssp HHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSS
T ss_pred HHHHHHHHcccC--cCHHHHHHHHHHHHHHHhhC---------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcC
Confidence 466777666 54 46778889999998865532 135677888888764 6899999999998864321
Q ss_pred hhH-------HH--HH---hcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCC
Q 000145 116 DLR-------LK--VL---LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPK 183 (2054)
Q Consensus 116 e~r-------~~--v~---~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~ 183 (2054)
..+ .. +- ....-+.|++.|.++++.+|..++.+|..++.... +.+ . -...++.|++.+.++
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~---p~~--~--w~~ll~~L~~~l~~~ 146 (861)
T 2bpt_A 74 SVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL---PHG--A--WPELMKIMVDNTGAE 146 (861)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG---GGT--C--CHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC---ccc--c--cHHHHHHHHHHHhcC
Confidence 000 00 10 01223577788888889999999999999986310 000 0 013678888888765
Q ss_pred CCCChhHHHHHHHHHHHHhcCCCchhHHH--HhhCChHHHHhhhccC--CHHHHHHHHHHHHHHHhhcCC-Ccchhcccc
Q 000145 184 NKQDNVVQGFVTGALRNLCGDKDGYWRAT--LEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGD-SIPTVIDSG 258 (2054)
Q Consensus 184 s~~d~~V~e~Al~aL~nL~~~~e~r~~aI--~eaGGI~~LV~LL~s~--s~evq~~A~~aL~nLs~~~~~-~r~~i~~sG 258 (2054)
. +..+++.++.+|..++..-......+ .....++.+...+.+. +++++..++.+|..+...-.. .........
T Consensus 147 ~--~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ 224 (861)
T 2bpt_A 147 Q--PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNY 224 (861)
T ss_dssp S--CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHH
Confidence 2 35688899999999987532210000 0111355666777776 789999999999887521100 000000112
Q ss_pred hHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHh
Q 000145 259 AVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY 338 (2054)
Q Consensus 259 aL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLs 338 (2054)
.++.+...+. +.+..+|..+..++..+....++.-........++.+...+.+.+.. ++..++..+..++
T Consensus 225 ll~~l~~~~~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------vr~~a~~~l~~l~ 294 (861)
T 2bpt_A 225 LMQVVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDK---------VASMTVEFWSTIC 294 (861)
T ss_dssp HHHHHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH---------HHHHHHHHHHHHH
Confidence 4555555555 56778999999999888764322111111113344555555554422 4455555554443
Q ss_pred cC-------------------------chhHHHHhhhhcCCCC---------chhhHHHHHHHHHHHHHHhhcCCCCCCc
Q 000145 339 GG-------------------------MPALVVYLGELSQSPR---------LAAPVADIIGALAYALMVFEQKSGVDDE 384 (2054)
Q Consensus 339 Gg-------------------------is~lI~~L~elL~s~~---------~~~~iA~~LgaL~~~~~~l~~~~~~~~~ 384 (2054)
.. ...+++.+...+.... ........++.++... . ..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~---~------~~ 365 (861)
T 2bpt_A 295 EEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC---G------NH 365 (861)
T ss_dssp HHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHH---G------GG
T ss_pred HHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHc---c------Hh
Confidence 21 0223444444444321 1223444555554322 0 01
Q ss_pred ccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChh---hhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 000145 385 PFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIF---LSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCR 461 (2054)
Q Consensus 385 ~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~---~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~ 461 (2054)
.+ ..+.+.+...+.+.+ ..+|..++.+++.+..... ....+ ...++.++..+.+.++.++..++.++..++.
T Consensus 366 ~~--~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~ 440 (861)
T 2bpt_A 366 IL--EPVLEFVEQNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIAD 440 (861)
T ss_dssp GH--HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 11 134466667777655 4589999999999975421 11111 2467888888888899999999999998876
Q ss_pred cCccc---hhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc---hhhHHHhhCCCchHhhhhhcC--CHHHH
Q 000145 462 REVGI---WEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD---SKWAITAAGGIPPLVQLLEAG--SQKAR 533 (2054)
Q Consensus 462 ~s~e~---r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e---~r~~I~~aGaIp~LV~LL~s~--s~~Vr 533 (2054)
.-... ... -...++.++..++++ +.++..++++|.+++....+ ....-.-...++.|++++++. ++.+|
T Consensus 441 ~~~~~~~~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr 517 (861)
T 2bpt_A 441 SVAESIDPQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNAR 517 (861)
T ss_dssp HHGGGSCTTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHH
T ss_pred HhhhhcCCHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHH
Confidence 42111 111 134578888888775 88999999999999874321 100001123456677778754 37899
Q ss_pred HHHHHHHHHHhcCCh-hHHHHHHHcCChHHHHHhhcc---------------CChhHHHHHHHHHHHHHHhhc-------
Q 000145 534 EVAAHVLWILCCHSE-DIRACVESAGAVPAFLWLLKS---------------GGPKGQDASAMALTKLIRAAD------- 590 (2054)
Q Consensus 534 e~AA~aL~nLa~~sd-~~r~~I~e~GaI~aLV~LLkS---------------~~~evq~~AA~AL~nLs~~~e------- 590 (2054)
..+..++..+..... .....+ ...++.++..+.+ ....++..+..+|.++.....
T Consensus 518 ~~a~~al~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 595 (861)
T 2bpt_A 518 ASAFSALTTMVEYATDTVAETS--ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA 595 (861)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHH--HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH
T ss_pred HHHHHHHHHHHHHcchhhHHHH--HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999999976432 222222 2345566655542 134577888999998886532
Q ss_pred hhhHHHHHHHhcCCCc-chHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcCh
Q 000145 591 SATINQLLALLLGDSP-SSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ 669 (2054)
Q Consensus 591 ~~~Ip~Lv~LL~~~~~-~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~ 669 (2054)
...++.+.+.++..+. .++..+..+++.++...... . ... -...++.|...++++++++|..++.++..++....
T Consensus 596 ~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~-~-~~~--l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG-F-EKY--LETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGG-G-HHH--HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhh-H-HHH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc
Confidence 2356777888887766 88888888888886432211 1 110 12357888888888888999999999999876433
Q ss_pred hhhhhhhhCCCHHHHHHHhccCC--HHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCC----------
Q 000145 670 DICGSLATDEIVNPCMRLLTSNT--QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSS---------- 737 (2054)
Q Consensus 670 e~r~~Iv~~g~V~~Lv~LL~dgs--~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d---------- 737 (2054)
+... -.-...++.+.+.+++.+ +.+|..+..+++.++..... ..... -..++++++..+....
T Consensus 672 ~~~~-~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~--~~~~~--l~~~l~~l~~~~~~~~~~~d~d~~~~ 746 (861)
T 2bpt_A 672 EDFR-RYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA--DFIPY--LNDIMALCVAAQNTKPENGTLEALDY 746 (861)
T ss_dssp GGGH-HHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG--GGHHH--HHHHHHHHHHHHTCCCSSSSHHHHHH
T ss_pred hhcc-chHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh--hHHHH--HHHHHHHHHHHHhcCCCCCChHHHHH
Confidence 2111 112456777788887754 78999999999999863222 22211 1236677777776421
Q ss_pred -HHHHHHHHHHHHHhhC--ChHHHHHHH--hcCcHHHHHHHHcCC----CHHHHHHHHHHHHHhhhcCCCchhHhhhhhh
Q 000145 738 -IDAAETAVAALANLLS--DPDIAAEVL--LEDVVSALTRVLAEG----TSEGKKNASRALHQLLKHFPVGDVLKGNAQC 808 (2054)
Q Consensus 738 -~~Vre~Al~AL~NLa~--~~e~r~~Iv--~~g~I~~LV~LL~s~----~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~ 808 (2054)
..++..++.++..++. .+. ...+. -...++.|...+.+. +..+|+.|..+++.|+..-+. ..+... ..
T Consensus 747 ~~~vr~~~l~~~~~i~~~l~~~-~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g-~~~~~~-~~ 823 (861)
T 2bpt_A 747 QIKVLEAVLDAYVGIVAGLHDK-PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPD-GSIKQF-YG 823 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC-HHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTT-STTGGG-TT
T ss_pred HHHHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCC-chHHHH-Hh
Confidence 3467788888888863 111 11111 123455555666553 789999999999999875311 122111 11
Q ss_pred hhhHHHHHHhhcc-CCCCchhHHHHHHHHHHHh
Q 000145 809 RFVVLTLVDSLNA-MDMNGTDVADALEVVALLA 840 (2054)
Q Consensus 809 ~g~v~~LV~LL~s-g~~~~~~~~~AL~ALa~La 840 (2054)
...++.|+..++. ...+...+..|.-+++.++
T Consensus 824 ~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~ 856 (861)
T 2bpt_A 824 QDWVIDYIKRTRSGQLFSQATKDTARWAREQQK 856 (861)
T ss_dssp CHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 2467888888874 3333445666666766665
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=183.16 Aligned_cols=200 Identities=21% Similarity=0.212 Sum_probs=182.6
Q ss_pred chhhHHHHHHHHcCCCChhhHHHHHHHHHHHhh-cChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCcc
Q 000145 387 DARQIEDILVMLLKPHDNKLVQERVLEAMASLY-GNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG 465 (2054)
Q Consensus 387 ~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~-~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e 465 (2054)
+..+..+.|+.++++.+.+ ++..++.+|.+++ .++.....+.+.++++.|+.++.+++++++..++.+|.+++..+++
T Consensus 9 ~~~~~~~~l~~LL~s~~~~-v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQ-ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHH-HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cccchhHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 4456678999999988765 9999999999998 5677888899999999999999999999999999999999987788
Q ss_pred chhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhc
Q 000145 466 IWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC 545 (2054)
Q Consensus 466 ~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~ 545 (2054)
.+..+.+.|+++.|+++++++++.++..++++|+|++.++++.+..+.+.|+++.|+++|++++++++..|+++|.+++.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 88999999999999999999999999999999999998777777888899999999999999999999999999999999
Q ss_pred CChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000145 546 HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 546 ~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~ 587 (2054)
+++..+..+.+.|+++.|+.+++++++++++.|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 888889999999999999999999999999999999999863
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-14 Score=191.29 Aligned_cols=772 Identities=13% Similarity=0.067 Sum_probs=444.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhc-cCchh
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLC-KDEDL 117 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL~~Ls-~~ee~ 117 (2054)
+.++++.+. +.+.+.|..|...|.++.... ..+.++.|+..+.++ ++.+|..|+.+|++.. ...+.
T Consensus 3 l~~~L~~~~--s~d~~~r~~A~~~L~~~~~~~---------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 3 LITILEKTV--SPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp HHHHHHGGG--CSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHHHhcC---------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH
Confidence 445555554 356778899999998765431 135678888888774 5889999999998753 22221
Q ss_pred HHHHHh---cCC--------hHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCC
Q 000145 118 RLKVLL---GGC--------IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186 (2054)
Q Consensus 118 r~~v~~---~Ga--------Ip~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~ 186 (2054)
+..... ... -+.+++.|.++++.+ ..++.++..++.... . ... -...++.|++.+.+++ .
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~---~--~~~--w~~ll~~l~~~l~~~~-~ 142 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI---P--VNQ--WPELIPQLVANVTNPN-S 142 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG---G--GTC--CTTHHHHHHHHHHCTT-C
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC---c--ccc--cHHHHHHHHHHHhCCC-C
Confidence 111100 011 234778887777777 888889988875210 0 000 1247888999887652 1
Q ss_pred ChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHHHHHHHHHHHHHhhcCCC-cchhcccchHHHH
Q 000145 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGDS-IPTVIDSGAVKAL 263 (2054)
Q Consensus 187 d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq~~A~~aL~nLs~~~~~~-r~~i~~sGaL~~L 263 (2054)
+..++..++.+|..++..-.+....-.-...++.+...+.++ +..++..++.+|..+....+.. .........++.+
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l 222 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVV 222 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356888999999999874321100000122356677777766 6889999999999887321100 0001111246666
Q ss_pred HHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchh
Q 000145 264 VQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPA 343 (2054)
Q Consensus 264 L~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~ 343 (2054)
...+. +.+..+|..+..++..+....++.-........++.++..+.+.+.. ++..++..+.+++.....
T Consensus 223 ~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------v~~~al~~l~~l~~~~~~ 292 (876)
T 1qgr_A 223 CEATQ-CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE---------VALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHTT-CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHcC-CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHHHHHHHh
Confidence 66665 46678898898988888764332211122223344444443332211 233333333332210000
Q ss_pred HHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChh
Q 000145 344 LVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIF 423 (2054)
Q Consensus 344 lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~ 423 (2054)
. . ........+ .....+.. ....+.
T Consensus 293 ~--------------------~--~~~~~~~~~-~~~~~~~~------------------~~~~~~-------------- 317 (876)
T 1qgr_A 293 L--------------------A--IEASEAAEQ-GRPPEHTS------------------KFYAKG-------------- 317 (876)
T ss_dssp H--------------------H--HHHHHHHHH-SSCCSSCC------------------CCHHHH--------------
T ss_pred H--------------------h--hhhcccccc-CCCccchh------------------HHHHHH--------------
Confidence 0 0 000000000 00000000 000000
Q ss_pred hhHHHhhcchHHHHHHHhc-------cCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHH
Q 000145 424 LSQWVSHAEAKKVLIGLIT-------MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQ 496 (2054)
Q Consensus 424 ~~~~L~~~g~I~~LI~LL~-------ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~ 496 (2054)
. -...++.++..+. +.+..++..++.+|..++....+ .+. ...++.+.+.+.+.+..+|..++.
T Consensus 318 ---~--~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~~~r~~a~~ 388 (876)
T 1qgr_A 318 ---A--LQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVM 388 (876)
T ss_dssp ---H--HHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred ---H--HHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCChHHHHHHHH
Confidence 0 0122344444443 23356788888888888765221 222 245667777888889999999999
Q ss_pred HHHHHhhhcc-chhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhH---HHHHHHcCChHHHHHhhccCCh
Q 000145 497 LIAILTEQVD-DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDI---RACVESAGAVPAFLWLLKSGGP 572 (2054)
Q Consensus 497 aL~nLs~~s~-e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~---r~~I~e~GaI~aLV~LLkS~~~ 572 (2054)
+|+.++.... +.... .-...++.++..|+++++.+|..|+++|.+++...... ...+ ...++.|+..+++. +
T Consensus 389 ~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~ 464 (876)
T 1qgr_A 389 AFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-P 464 (876)
T ss_dssp HHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-H
T ss_pred HHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-H
Confidence 9999987433 21111 22346788889999999999999999999998642210 1111 23567777888774 8
Q ss_pred hHHHHHHHHHHHHHHhhc---------------------hhhHHHHHHHhcCC---CcchHHHHHHHHHHHHhhhcchHH
Q 000145 573 KGQDASAMALTKLIRAAD---------------------SATINQLLALLLGD---SPSSKAHVIKVLGHVLTMALQEDL 628 (2054)
Q Consensus 573 evq~~AA~AL~nLs~~~e---------------------~~~Ip~Lv~LL~~~---~~~V~~~a~~AL~~La~~~~~~d~ 628 (2054)
.++..++++|.+++.... ...++.|.+.+... +..++..+.++++.+...... +.
T Consensus 465 ~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~-~~ 543 (876)
T 1qgr_A 465 RVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK-DC 543 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS-TT
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch-hh
Confidence 999999999999986521 23567777777654 346777888999888754332 11
Q ss_pred HHhhhhcccchHHHHHHhcc----------C-C----HHHHHHHHHHHHHHhhcCh-hhhhhhhhCCCHHHHHHHhccCC
Q 000145 629 VQKGSAANKGLRSLVQVLNS----------S-N----EENQEYAASVLADLFSMRQ-DICGSLATDEIVNPCMRLLTSNT 692 (2054)
Q Consensus 629 ~~~~l~~~GaI~~LV~LLks----------~-s----~evre~Aa~ALanLas~~~-e~r~~Iv~~g~V~~Lv~LL~dgs 692 (2054)
.. .-...++.++..+.. . + ++++..+..++..++..-. +... -.-..+++.++.++++.+
T Consensus 544 ~~---~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~l~~~l~~~l~~~~ 619 (876)
T 1qgr_A 544 YP---AVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL-QISDVVMASLLRMFQSTA 619 (876)
T ss_dssp HH---HHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH-TTHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh-HHHHHHHHHHHHHHHhcc
Confidence 10 011235555554432 1 2 4567888899998876432 1111 112456788888887764
Q ss_pred --HHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcC-CHHHHHHHHHHHHHhhC--ChHHHHHHHhcCcH
Q 000145 693 --QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS-SIDAAETAVAALANLLS--DPDIAAEVLLEDVV 767 (2054)
Q Consensus 693 --~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~-d~~Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I 767 (2054)
..++..+..++..++..... ..... . ..+++.|...+.+. +.+++..++.+++.++. .+..... -...+
T Consensus 620 ~~~~v~~~a~~~l~~l~~~~~~--~~~~~-~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~i~ 693 (876)
T 1qgr_A 620 GSGGVQEDALMAVSTLVEVLGG--EFLKY-M-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF--CDEVM 693 (876)
T ss_dssp -CCHHHHHHHHHHHHHHHHHGG--GGGGG-H-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH--HHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHh--hHHHH-H-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHH
Confidence 47899999999998862211 12111 1 23677788888886 89999999999999974 2222222 23567
Q ss_pred HHHHHHHcC--CCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCC--C-------chhHHHHHHHH
Q 000145 768 SALTRVLAE--GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDM--N-------GTDVADALEVV 836 (2054)
Q Consensus 768 ~~LV~LL~s--~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~--~-------~~~~~~AL~AL 836 (2054)
+.|...+.+ .+.++|..+.+++++++...+ ..+...+ ...++.+...+....+ + ...+..++.++
T Consensus 694 ~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g--~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~ 769 (876)
T 1qgr_A 694 QLLLENLGNENVHRSVKPQILSVFGDIALAIG--GEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAY 769 (876)
T ss_dssp HHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG--GGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCccccHHhhHHHHHHHHHHHHHhc--hhHHHHH--HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHH
Confidence 788888876 467899999999999987421 2222111 3455666666643211 1 14566667777
Q ss_pred HHHhhcc-cCCCccCCcccccccCCCchHHHH----HhhhcC--ChhHHHHHHHHHHHhhccCCc-hhhhhhhcccccHH
Q 000145 837 ALLARTK-QGLNFTYPPWAALAEVPSSIEPLV----CCLAEG--PPPLQDKAIEILSRLCGDQPA-VLGDFLMARSSSIG 908 (2054)
Q Consensus 837 a~La~~~-~~~~~i~~~~~~~~~~~~~L~~Lv----~ll~~~--~~~vq~~Ai~iL~~L~~~~~~-~~~~~~~~~~~~i~ 908 (2054)
..+...- .......+.. ......++.+. ....++ +..+|..|+..|..++...+. ....+. .+.|+.
T Consensus 770 ~~i~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~~~i~ 844 (876)
T 1qgr_A 770 TGIVQGLKGDQENVHPDV---MLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE--ARPMIH 844 (876)
T ss_dssp HHHHHHHHCSSSSCCGGG---GGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH--TSHHHH
T ss_pred HHHHHHHccCcccccchH---HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHH--hcHHHH
Confidence 7655321 1100000000 00111233333 333455 667999999999999875432 222221 457888
Q ss_pred HHHHHHhcccCceeehhhhHHH
Q 000145 909 ALADRIMHSSSLEVRVGGAALL 930 (2054)
Q Consensus 909 ~La~~il~s~~~ev~~~~~~~~ 930 (2054)
.+..+.+.++..++|..+...+
T Consensus 845 ~ll~~~l~~~~~~~r~~a~~a~ 866 (876)
T 1qgr_A 845 ELLTEGRRSKTNKAKTLARWAT 866 (876)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHhhcCCHhHHHHHHHHH
Confidence 8998777788888887776655
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-13 Score=180.87 Aligned_cols=732 Identities=14% Similarity=0.113 Sum_probs=440.4
Q ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCCCCChhH
Q 000145 87 PLFISIL-RSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2054)
Q Consensus 87 p~LV~LL-ks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s--ed~eVr~aAa~AL~nLS~~~~nk~~~~ 163 (2054)
..++..+ .+++.+.|..|-..|..+.... ..+.+..|++++.+ .++.+|..|+..|.+..... ....
T Consensus 7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~---w~~~ 76 (861)
T 2bpt_A 7 AQLLENSILSPDQNIRLTSETQLKKLSNDN-------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSK---DSVK 76 (861)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCS---SHHH
T ss_pred HHHHHHcccCcCHHHHHHHHHHHHHHHhhC-------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCc---ChHH
Confidence 3344445 6788999999999998874321 12456788888876 47899999999999986421 1000
Q ss_pred HH------H--H---HHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC-C-chhHHHHhhCChHHHHhhhccC-C
Q 000145 164 MK------I--F---VTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK-D-GYWRATLEAGGVDIIVGLLSSD-N 229 (2054)
Q Consensus 164 re------~--I---v~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~-e-~r~~aI~eaGGI~~LV~LL~s~-s 229 (2054)
.. . + ....+-..|++.+.+.+ ..++..+..+|..+.... + +.|.. .++.|+..+.++ +
T Consensus 77 ~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~---~~vr~~~~~~l~~i~~~~~p~~~w~~-----ll~~L~~~l~~~~~ 148 (861)
T 2bpt_A 77 TQQFAQRWITQVSPEAKNQIKTNALTALVSIE---PRIANAAAQLIAAIADIELPHGAWPE-----LMKIMVDNTGAEQP 148 (861)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSS---HHHHHHHHHHHHHHHHHHGGGTCCHH-----HHHHHHHHTSTTSC
T ss_pred HHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCc---hHHHHHHHHHHHHHHHhhCcccccHH-----HHHHHHHHHhcCCC
Confidence 00 0 0 11223456777776543 567888888888887653 1 23332 467788888888 8
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCc-chhcccchHHHHHHHhccC-CChhHHHHHHHHHHHHhhccHHH-HHHHHhcCCHHH
Q 000145 230 AAAQSNAASLLARLMLAFG-DSI-PTVIDSGAVKALVQLVGQN-NDISVRASAADALEALSSKSIKA-KKAVVAADGVPV 305 (2054)
Q Consensus 230 ~evq~~A~~aL~nLs~~~~-~~r-~~i~~sGaL~~LL~LL~s~-~d~~Vr~~Aa~aL~nLs~~s~e~-Rk~I~eaggL~~ 305 (2054)
+.++..++.+|..++..-. +.+ -.-.....++.+...+.+. .+..+|..+..++..+...-... .........++.
T Consensus 149 ~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~ 228 (861)
T 2bpt_A 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQV 228 (861)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHH
Confidence 8999999999999995322 111 0111223566667777643 26789999999998874321110 000000112344
Q ss_pred HHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcc
Q 000145 306 LIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEP 385 (2054)
Q Consensus 306 LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~ 385 (2054)
|.+.+.+++.+ ++..+..+|..+....+..+ ...
T Consensus 229 l~~~~~~~~~~---------~r~~a~~~l~~l~~~~~~~~-------------------------------------~~~ 262 (861)
T 2bpt_A 229 VCEATQAEDIE---------VQAAAFGCLCKIMSKYYTFM-------------------------------------KPY 262 (861)
T ss_dssp HHHHHTCSCHH---------HHHHHHHHHHHHHHHHGGGC-------------------------------------HHH
T ss_pred HHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHH-------------------------------------HHH
Confidence 44444443322 44555565555432111100 000
Q ss_pred cchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhh---------------HHH--hhcchHHHHHHHhccC----
Q 000145 386 FDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLS---------------QWV--SHAEAKKVLIGLITMA---- 444 (2054)
Q Consensus 386 ~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~---------------~~L--~~~g~I~~LI~LL~ss---- 444 (2054)
+ ...+.+.+...+.+.++ .++..++..+..++...... +.+ .-...++.++..+...
T Consensus 263 l-~~~l~~~~~~~~~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~ 340 (861)
T 2bpt_A 263 M-EQALYALTIATMKSPND-KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDP 340 (861)
T ss_dssp H-HHTHHHHHHHHTTCSSH-HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-
T ss_pred H-HHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 0 00223444455555443 48888888888775532100 001 0134566777777642
Q ss_pred ---CHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhcc-chhhHHHhhCCCch
Q 000145 445 ---TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVD-DSKWAITAAGGIPP 520 (2054)
Q Consensus 445 ---d~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~-e~r~~I~~aGaIp~ 520 (2054)
+..++..+..+|..++.... ..+. ...++.+.+.+.+.+..+|+.++.+++.++.... +.-.... ...++.
T Consensus 341 ~d~~~~~r~~a~~~L~~l~~~~~---~~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~ 415 (861)
T 2bpt_A 341 EDDDWNVSMSAGACLQLFAQNCG---NHIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPS 415 (861)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHG---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHcc---HhHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHH
Confidence 24678888899988876422 1111 2345667777888888999999999999986422 1111111 246777
Q ss_pred HhhhhhcCCHHHHHHHHHHHHHHhcCChh---HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-------
Q 000145 521 LVQLLEAGSQKAREVAAHVLWILCCHSED---IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD------- 590 (2054)
Q Consensus 521 LV~LL~s~s~~Vre~AA~aL~nLa~~sd~---~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e------- 590 (2054)
|+..++++++.+|..++++|+.++..-.. ....+ ...++.++..+++. +.++..++++|.+++....
T Consensus 416 l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l 492 (861)
T 2bpt_A 416 ILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPI 492 (861)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGG
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhh
Confidence 88888889999999999999998752110 00011 23467777888775 8999999999999987521
Q ss_pred ----hhhHHHHHHHhcCCC--cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc---------------C
Q 000145 591 ----SATINQLLALLLGDS--PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS---------------S 649 (2054)
Q Consensus 591 ----~~~Ip~Lv~LL~~~~--~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks---------------~ 649 (2054)
...++.|.+++...+ ++++..+.++++.+....... . ... -...++.++..+.. .
T Consensus 493 ~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~-~~~--~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~ 568 (861)
T 2bpt_A 493 YNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-V-AET--SASISTFVMDKLGQTMSVDENQLTLEDAQS 568 (861)
T ss_dssp GGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-G-HHH--HHHHHHHHHHHHHHHTTSCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-h-HHH--HHHHHHHHHHHHHHHHhhhcccCChhhHHH
Confidence 234677778887433 678888999999987543321 1 000 11245556665542 1
Q ss_pred CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH-HHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhh
Q 000145 650 NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ-MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKP 728 (2054)
Q Consensus 650 s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~-~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~ 728 (2054)
..+++..+..+|.+++..-++.... .-...++.+...+++.+. .++..+..+++.++..... .... .-...++.
T Consensus 569 ~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~--~~~~--~l~~i~~~ 643 (861)
T 2bpt_A 569 LQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGK--GFEK--YLETFSPY 643 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGG--GGHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhh--hHHH--HHHHHHHH
Confidence 3457788999999998743332111 123567778888888776 8899999999998862221 2221 12337888
Q ss_pred HHhhhhcCCHHHHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCC--HHHHHHHHHHHHHhhhcCCCchhHhh
Q 000145 729 LIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGT--SEGKKNASRALHQLLKHFPVGDVLKG 804 (2054)
Q Consensus 729 Lv~LL~s~d~~Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~--~evr~~Aa~AL~nL~~~~~~~e~i~~ 804 (2054)
|...+++.+.+++..++.+++.++. ....... ....++.+.+.+.+.+ +.+|..+..+++.++...+ +.+..
T Consensus 644 l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~--~~~~~ 719 (861)
T 2bpt_A 644 LLKALNQVDSPVSITAVGFIADISNSLEEDFRRY--SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG--ADFIP 719 (861)
T ss_dssp HHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHH--HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG--GGGHH
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHhchhccch--HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhh--hhHHH
Confidence 8888988888999999999998874 2222222 2346777788887754 8899999999999987531 22221
Q ss_pred hhhhhhhHHHHHHhhccCCC--C-------chhHHHHHHHHHHHhhcccCC-CccCCcccccccCCCchHHHHHhhhcC-
Q 000145 805 NAQCRFVVLTLVDSLNAMDM--N-------GTDVADALEVVALLARTKQGL-NFTYPPWAALAEVPSSIEPLVCCLAEG- 873 (2054)
Q Consensus 805 ~i~~~g~v~~LV~LL~sg~~--~-------~~~~~~AL~ALa~La~~~~~~-~~i~~~~~~~~~~~~~L~~Lv~ll~~~- 873 (2054)
.+ ...++.++..+..... + ...+..++++++.+...-... .... ++ .+.-+..+..++.+.
T Consensus 720 ~l--~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~-~~-----~~~i~~~l~~~~~d~~ 791 (861)
T 2bpt_A 720 YL--NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALF-PY-----VGTIFQFIAQVAEDPQ 791 (861)
T ss_dssp HH--HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHG-GG-----HHHHHHHHHHHHHCHH
T ss_pred HH--HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH-HH-----HHHHHHHHHHHHcCcc
Confidence 11 3466777777753210 1 234567777777776431110 0000 00 111234444454543
Q ss_pred ---ChhHHHHHHHHHHHhhccC-CchhhhhhhcccccHHHHHHHHh
Q 000145 874 ---PPPLQDKAIEILSRLCGDQ-PAVLGDFLMARSSSIGALADRIM 915 (2054)
Q Consensus 874 ---~~~vq~~Ai~iL~~L~~~~-~~~~~~~~~~~~~~i~~La~~il 915 (2054)
+..++..|+.++..++... ...+..+. ...++..|.+.+-
T Consensus 792 ~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~--~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 792 LYSEDATSRAAVGLIGDIAAMFPDGSIKQFY--GQDWVIDYIKRTR 835 (861)
T ss_dssp HHTSHHHHHHHHHHHHHHHHHCTTSTTGGGT--TCHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHcCCchHHHHH--hcHHHHHHHHHHh
Confidence 7789999999999998754 22222222 1267888887765
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-17 Score=187.62 Aligned_cols=196 Identities=16% Similarity=0.134 Sum_probs=166.9
Q ss_pred ccHHHHHhhhcCCCh--hhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHH
Q 000145 474 EGIQLLISLLGLSSE--QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2054)
Q Consensus 474 ggIp~LV~LL~s~d~--~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r 551 (2054)
-.+|.++++|+++++ +++..|++.|.+|+..+++++..+.+.|++|+|+++|+++++++|+.|+++|.||+.++++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368999999999988 889999999999998888999999999999999999999999999999999999999888999
Q ss_pred HHHHHcCChHHHHHhhc-cCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 552 ACVESAGAVPAFLWLLK-SGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 552 ~~I~e~GaI~aLV~LLk-S~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
..+.+.|+||+|+++|+ +++.++++.++.+|+||+..++ .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~-----------------~k~~------------------- 131 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK-----------------LKNL------------------- 131 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGG-----------------GHHH-------------------
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChh-----------------hHHH-------------------
Confidence 99999999999999998 5789999999999999986532 1110
Q ss_pred hhhhcccchHHHHHHhc----------------cCCHHHHHHHHHHHHHHhhcChhhhhhhhhC-CCHHHHHHHhccC--
Q 000145 631 KGSAANKGLRSLVQVLN----------------SSNEENQEYAASVLADLFSMRQDICGSLATD-EIVNPCMRLLTSN-- 691 (2054)
Q Consensus 631 ~~l~~~GaI~~LV~LLk----------------s~s~evre~Aa~ALanLas~~~e~r~~Iv~~-g~V~~Lv~LL~dg-- 691 (2054)
+.+ +++++|++++. ..+.+++++|+.+|.||++.+++.|..+.+. |.|+.|+.+++.+
T Consensus 132 --i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~ 208 (233)
T 3tt9_A 132 --MIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA 208 (233)
T ss_dssp --HHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred --HHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh
Confidence 111 23555555331 2367999999999999998788999999876 6789999999752
Q ss_pred ----CHHHHHHHHHHHHHhhC
Q 000145 692 ----TQMVATQSARALGALSR 708 (2054)
Q Consensus 692 ----s~~vr~~AA~AL~nLs~ 708 (2054)
++..+++|..+|+||+.
T Consensus 209 ~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 209 DYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp TTCTTCHHHHHHHHHHHHHCC
T ss_pred cccchhHHHHHHHHHHHHHHh
Confidence 45789999999999986
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-16 Score=180.85 Aligned_cols=199 Identities=22% Similarity=0.233 Sum_probs=167.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcc-CchhHH
Q 000145 41 VAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRL 119 (2054)
Q Consensus 41 V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~-~ee~r~ 119 (2054)
+..+++.|+..+.+.+.+..|+..|.+++.+++.+|..|.+ .|+||.||++|+++++++|..|+++|.+|+. ++++|.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~-~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQ-LRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 55677777665544467788999999999999999999998 8999999999999999999999999999997 478999
Q ss_pred HHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCC---C----------CC
Q 000145 120 KVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP---K----------NK 185 (2054)
Q Consensus 120 ~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s---~----------s~ 185 (2054)
.+.+.|+||+|+++|++ .+.++++.|+.+|++|+. .+.+|..+++ +++|.|++++.. + ..
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-----~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-----NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-----SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-----ChhhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence 99999999999999985 799999999999999996 4556778877 479999997741 1 11
Q ss_pred CChhHHHHHHHHHHHHhcCCCchhHHHHhhC-ChHHHHhhhccC------CHHHHHHHHHHHHHHHhh
Q 000145 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAG-GVDIIVGLLSSD------NAAAQSNAASLLARLMLA 246 (2054)
Q Consensus 186 ~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaG-GI~~LV~LL~s~------s~evq~~A~~aL~nLs~~ 246 (2054)
.+..+++++.++|+||+..++..++.|++.+ +|+.|+.++... +...+++|+.+|.||++.
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 2457999999999999997755557787764 589999999763 457899999999999853
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-13 Score=179.43 Aligned_cols=694 Identities=13% Similarity=0.088 Sum_probs=397.3
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHH--------HHHHhh--hcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 000145 42 AKFLEQLHANMSSPQERELITMRILTIAKAKKEA--------RLLIGS--HAQAMPLFISILRSGTPLAKVNVAATLSVL 111 (2054)
Q Consensus 42 ~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~a--------r~~I~~--~aGgVp~LV~LLks~s~evr~~AA~vL~~L 111 (2054)
..++..+...+.+...|..|...|.+.....+.. +..+.. ....-+.++..|.++++.+ ..++.++..+
T Consensus 38 ~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i 116 (876)
T 1qgr_A 38 VELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGI 116 (876)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHH
Confidence 3344555554456777888888888865322111 110000 0112234777888877777 8888888887
Q ss_pred ccCchhHHHHHhcCChHHHHHhhccC--CHHHHHHHHHHHHHHhcCCCCCChhHHHHHH--HcCcHHHHHHhhCCCCCCC
Q 000145 112 CKDEDLRLKVLLGGCIPPLLSLLKSE--STDTRKAAAEALYEVSSGGLSDDHVGMKIFV--TEGVVPTLWDQLNPKNKQD 187 (2054)
Q Consensus 112 s~~ee~r~~v~~~GaIp~LV~LL~se--d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv--~aG~Vp~Lv~LL~s~s~~d 187 (2054)
+....... .-...++.|++.+.++ ++.+|..++.+|..++... .. +.+. -...++.+.+.+..+. ..
T Consensus 117 ~~~~~~~~--~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~---~~---~~~~~~~~~ll~~l~~~l~~~~-~~ 187 (876)
T 1qgr_A 117 ACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI---DP---EQLQDKSNEILTAIIQGMRKEE-PS 187 (876)
T ss_dssp HHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS---CH---HHHGGGHHHHHHHHHHHHSTTC-SC
T ss_pred HHhhCccc--ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc---CH---hhHHhHHHHHHHHHHHhhcCCC-CC
Confidence 64321100 0126689999999887 9999999999999998521 11 1111 1235667777776552 13
Q ss_pred hhHHHHHHHHHHHHhcCCCchh-HHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHH
Q 000145 188 NVVQGFVTGALRNLCGDKDGYW-RATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQL 266 (2054)
Q Consensus 188 ~~V~e~Al~aL~nL~~~~e~r~-~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~L 266 (2054)
..++..++++|.++...-.... ........++.+...+.+.+.+++..++.+|..+....++.-........++.++..
T Consensus 188 ~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 267 (876)
T 1qgr_A 188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA 267 (876)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999875421110 000111246666777777788999999999999996554433333333567777777
Q ss_pred hccCCChhHHHHHHHHHHHHhhccHHHHH---HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchh
Q 000145 267 VGQNNDISVRASAADALEALSSKSIKAKK---AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPA 343 (2054)
Q Consensus 267 L~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk---~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~ 343 (2054)
+. +.+..++..+...+..++........ ...+.+.-+ ..+...+. ...+..+ ++.
T Consensus 268 ~~-~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------------~~~~~~l---l~~ 325 (876)
T 1qgr_A 268 MK-SDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP------EHTSKFYA------------KGALQYL---VPI 325 (876)
T ss_dssp HT-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCC------SSCCCCHH------------HHHHHHH---HHH
T ss_pred hc-CCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCc------cchhHHHH------------HHHHHHH---hHH
Confidence 76 46778999999888888763111000 000000000 00000000 0000000 111
Q ss_pred HHHHhhhhcC-----CCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHh
Q 000145 344 LVVYLGELSQ-----SPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASL 418 (2054)
Q Consensus 344 lI~~L~elL~-----s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L 418 (2054)
++..+.+... +.+........++.++.... +.+. ..+.+.+...+.+.+ ..+|..++.+++.+
T Consensus 326 ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~----------~~~~-~~~l~~l~~~l~~~~-~~~r~~a~~~l~~i 393 (876)
T 1qgr_A 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE----------DDIV-PHVLPFIKEHIKNPD-WRYRDAAVMAFGCI 393 (876)
T ss_dssp HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG----------GGGH-HHHHHHHHHHTTCSS-HHHHHHHHHHHHHT
T ss_pred HHHHhhcccccccccccHHHHHHHHHHHHHHHHCc----------HhhH-HHHHHHHHHHccCCC-hHHHHHHHHHHHHH
Confidence 1122211111 01112233444444443220 0111 134466667776654 45999999999999
Q ss_pred hcChh---hhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccc---hhhhhccccHHHHHhhhcCCChhhhH
Q 000145 419 YGNIF---LSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGI---WEAIGKREGIQLLISLLGLSSEQHQE 492 (2054)
Q Consensus 419 ~~n~~---~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~---r~~Ive~ggIp~LV~LL~s~d~~Vr~ 492 (2054)
..... ... .-...++.++..+.+.++.++..++.+|.+++...+.. ...+ ...++.++..++++ +.++.
T Consensus 394 ~~~~~~~~~~~--~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l--~~~l~~l~~~l~~~-~~v~~ 468 (876)
T 1qgr_A 394 LEGPEPSQLKP--LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYL--APLLQCLIEGLSAE-PRVAS 468 (876)
T ss_dssp SSSSCHHHHHH--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTH--HHHHHHHHHHTTSC-HHHHH
T ss_pred HcCCCHHHHHH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHH--HHHHHHHHHHHcCC-HHHHH
Confidence 75432 222 12356788999999999999999999999998753321 1111 35677888888774 78999
Q ss_pred HHHHHHHHHhhhccc-----------hhhHH--HhhCCCchHhhhhhcC---CHHHHHHHHHHHHHH-------------
Q 000145 493 YAVQLIAILTEQVDD-----------SKWAI--TAAGGIPPLVQLLEAG---SQKAREVAAHVLWIL------------- 543 (2054)
Q Consensus 493 ~Aa~aL~nLs~~s~e-----------~r~~I--~~aGaIp~LV~LL~s~---s~~Vre~AA~aL~nL------------- 543 (2054)
.++++|.+++....+ ....+ .-...++.|.+.+... +..++..+..++..+
T Consensus 469 ~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~ 548 (876)
T 1qgr_A 469 NVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQ 548 (876)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHH
T ss_pred HHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHH
Confidence 999999999864210 00000 0012334444444332 234444444444433
Q ss_pred -------------------------------------------hcCCh--hHHHHHHHcCChHHHHHhhccCC--hhHHH
Q 000145 544 -------------------------------------------CCHSE--DIRACVESAGAVPAFLWLLKSGG--PKGQD 576 (2054)
Q Consensus 544 -------------------------------------------a~~sd--~~r~~I~e~GaI~aLV~LLkS~~--~evq~ 576 (2054)
...-. .....+ ...++.++.++++.. +.++.
T Consensus 549 ~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~ 626 (876)
T 1qgr_A 549 KTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQE 626 (876)
T ss_dssp HHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccH
Confidence 22110 000000 123556667777654 47899
Q ss_pred HHHHHHHHHHHhhc-------hhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc
Q 000145 577 ASAMALTKLIRAAD-------SATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS 648 (2054)
Q Consensus 577 ~AA~AL~nLs~~~e-------~~~Ip~Lv~LL~~~-~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks 648 (2054)
.+..++..++.... ...++.+...+.+. ++.++..+.++++.+....... ... .-...++.++..+++
T Consensus 627 ~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~--~~~--~~~~i~~~l~~~l~~ 702 (876)
T 1qgr_A 627 DALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN--IIP--FCDEVMQLLLENLGN 702 (876)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG--GHH--HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHh--hhh--hHHHHHHHHHHHhCC
Confidence 99999999886521 24567788888875 7888988999999887543211 111 013457788888876
Q ss_pred --CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCC----H-------HHHHHHHHHHHHhhCCCCccc-
Q 000145 649 --SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNT----Q-------MVATQSARALGALSRPTKTKT- 714 (2054)
Q Consensus 649 --~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs----~-------~vr~~AA~AL~nLs~s~~~~d- 714 (2054)
.+.+++..+..++.+++...++.... .-..+++.+.+.+.... + .+|..+..++..+........
T Consensus 703 ~~~~~~~~~~~~~~l~~i~~~~g~~~~~-~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~ 781 (876)
T 1qgr_A 703 ENVHRSVKPQILSVFGDIALAIGGEFKK-YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQE 781 (876)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred ccccHHhhHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 36789999999999997632222111 11345666666665432 2 677778888876654111000
Q ss_pred --ch-hHHHHhcCChhhHHhhh----hcC--CHHHHHHHHHHHHHhhCC--h-HHHHHHHhcCcHHHHHH-HHcCCCHHH
Q 000145 715 --TN-KMSYIAEGDVKPLIKLA----KTS--SIDAAETAVAALANLLSD--P-DIAAEVLLEDVVSALTR-VLAEGTSEG 781 (2054)
Q Consensus 715 --~~-r~~I~~~gaV~~Lv~LL----~s~--d~~Vre~Al~AL~NLa~~--~-e~r~~Iv~~g~I~~LV~-LL~s~~~ev 781 (2054)
.. ...+ ...++.++..+ .+. +..+|..|+.+|+.|+.. . .. ........+++|+. .+.+.++.+
T Consensus 782 ~~~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~-~~~~~~~~i~~ll~~~l~~~~~~~ 858 (876)
T 1qgr_A 782 NVHPDVMLV--QPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVL-KLVEARPMIHELLTEGRRSKTNKA 858 (876)
T ss_dssp SCCGGGGGS--GGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHH-HHHHTSHHHHHHHHHHHHCSCHHH
T ss_pred cccchHHHH--HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHH-HHHHhcHHHHHHHHHHhhcCCHhH
Confidence 00 0000 11233333333 555 789999999999999752 2 22 22334567888888 898999999
Q ss_pred HHHHHHHHHHhhh
Q 000145 782 KKNASRALHQLLK 794 (2054)
Q Consensus 782 r~~Aa~AL~nL~~ 794 (2054)
|..|+|+++++..
T Consensus 859 r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 859 KTLARWATKELRK 871 (876)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.5e-15 Score=179.67 Aligned_cols=184 Identities=22% Similarity=0.218 Sum_probs=164.0
Q ss_pred hhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhh-hhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHh
Q 000145 488 EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQ-LLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566 (2054)
Q Consensus 488 ~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~-LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~L 566 (2054)
.+.+..|+..|.+++. +.++...+.+.|++++|+. +|.++++.+|+.|+++|++++.+++..+..+.+.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4578889999999988 5678888899999999999 9999999999999999999999999999999999999999999
Q ss_pred hccC-ChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHH
Q 000145 567 LKSG-GPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV 645 (2054)
Q Consensus 567 LkS~-~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~L 645 (2054)
++++ ++.+++.|+|+|+|++.+.. . ....+.+.|+++.|+.+
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~----------------~---------------------~~~~~~~~ggi~~L~~l 175 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQE----------------A---------------------GLLQFLRLDGFSVLMRA 175 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCH----------------H---------------------HHHHHHHTTHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCc----------------H---------------------HHHHHHHCCCHHHHHHH
Confidence 9964 78999999999999975411 0 01113456789999999
Q ss_pred hccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCC
Q 000145 646 LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRP 709 (2054)
Q Consensus 646 Lks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s 709 (2054)
+++++..++..|+++|.+|+.++++.+..+++.|++++|+.+|+++++.+++.|+++|++|...
T Consensus 176 L~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 176 MQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 9999999999999999999988899999999999999999999999999999999999999974
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.6e-15 Score=175.42 Aligned_cols=202 Identities=17% Similarity=0.170 Sum_probs=175.7
Q ss_pred hhHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHH-HHccCCHHHHHHH
Q 000145 36 STMSTVAKFLEQLHAN----------MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFIS-ILRSGTPLAKVNV 104 (2054)
Q Consensus 36 ~t~~~V~qlIe~L~~s----------sss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~-LLks~s~evr~~A 104 (2054)
.-...+...++.|.+. +.+.+.|..|+..|.+++...++++.+ .+ .|++|.|+. +|+++++++|..|
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~-~~-~G~l~~Lv~~lL~s~~~~vr~~A 102 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADF-CQ-LSGMHLLVGRYLEAGAAGLRWRA 102 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHH-HH-TTHHHHHHHTTTTCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHH-HH-cCCHHHHHHHHHcCCCHHHHHHH
Confidence 3456677777778764 344568999999999999987766555 45 799999999 9999999999999
Q ss_pred HHHHHHhccC-chhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCC
Q 000145 105 AATLSVLCKD-EDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNP 182 (2054)
Q Consensus 105 A~vL~~Ls~~-ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s 182 (2054)
+++|++++.+ +..+..++..|++++|+++|++ .+..+++.|+++|.+++.+ ...+.+.+++.|++|.|+.+|.+
T Consensus 103 a~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~----~~~~~~~~~~~ggi~~L~~lL~~ 178 (296)
T 1xqr_A 103 AQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE----QEAGLLQFLRLDGFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC----CcHHHHHHHHCCCHHHHHHHHcC
Confidence 9999999875 5688889999999999999996 5899999999999999973 45567889999999999999986
Q ss_pred CCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhh
Q 000145 183 KNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246 (2054)
Q Consensus 183 ~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~ 246 (2054)
++ ..++..++++|.+++.+++.....+.+.|+++.|+.+|.+++..+++.++.+|.++...
T Consensus 179 ~d---~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 179 QV---QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp SC---HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred CC---HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 53 67899999999999998777788999999999999999999999999999999999954
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-12 Score=164.21 Aligned_cols=510 Identities=13% Similarity=0.106 Sum_probs=339.2
Q ss_pred ChHHHHhhhccCCHHHHHH-HHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHH
Q 000145 217 GVDIIVGLLSSDNAAAQSN-AASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKK 295 (2054)
Q Consensus 217 GI~~LV~LL~s~s~evq~~-A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk 295 (2054)
-+.-+-..|.+++...+.. ..++++.+..+.+ -..+...+++++. +++..+|..+-..+..++..+++..
T Consensus 14 e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d-------~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~e~~- 84 (591)
T 2vgl_B 14 EIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD-------VSSLFPDVVNCMQ-TDNLELKKLVYLYLMNYAKSQPDMA- 84 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC-------CGGGHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHSHHHH-
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcccCchHH-
Confidence 3556666777777555544 4455555553331 1345677888887 5778899888888888776433332
Q ss_pred HHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHh
Q 000145 296 AVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVF 375 (2054)
Q Consensus 296 ~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l 375 (2054)
.-.++.+.+-+.++++. ++..|+.+|+++.. +..
T Consensus 85 ----~l~~n~l~kdL~~~n~~---------ir~~AL~~L~~i~~--~~~------------------------------- 118 (591)
T 2vgl_B 85 ----IMAVNSFVKDCEDPNPL---------IRALAVRTMGCIRV--DKI------------------------------- 118 (591)
T ss_dssp ----HTTHHHHGGGSSSSSHH---------HHHHHHHHHHTCCS--GGG-------------------------------
T ss_pred ----HHHHHHHHHHcCCCCHH---------HHHHHHHHHHcCCh--HHH-------------------------------
Confidence 12345555556655533 45566666665531 110
Q ss_pred hcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcC-hhhhHHHhhcchHHHHHHHhccCCHHHHHHHHH
Q 000145 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIGLITMATADVREYLIL 454 (2054)
Q Consensus 376 ~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n-~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~ 454 (2054)
...+.+.+..++.+.++ .+|..|+.++..++.. ++. +...+.++.+..++.+.++.++..|+.
T Consensus 119 ------------~~~l~~~l~~~L~d~~~-~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~ 182 (591)
T 2vgl_B 119 ------------TEYLCEPLRKCLKDEDP-YVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVA 182 (591)
T ss_dssp ------------HHHHHHHHHHHSSCSCH-HHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHH
Confidence 01233556777876655 5999999999999753 332 222456788999999999999999999
Q ss_pred HHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHH
Q 000145 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKARE 534 (2054)
Q Consensus 455 AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre 534 (2054)
+|..++..+++....-...+.++.|++.+...++-.+...+.+|.+++..+++. ....++.+..+|++.++.++.
T Consensus 183 aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~-----~~~~l~~l~~~l~~~~~~V~~ 257 (591)
T 2vgl_B 183 ALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE-----AQSICERVTPRLSHANSAVVL 257 (591)
T ss_dssp HHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH-----HHHHHHHHTTCSCSSTTHHHH
T ss_pred HHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH-----HHHHHHHHHHHHcCCChHHHH
Confidence 999999875543211112345677777777778878888888877776432221 123466777788888999999
Q ss_pred HHHHHHHHHhc----CChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHh--cCCCcch
Q 000145 535 VAAHVLWILCC----HSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALL--LGDSPSS 608 (2054)
Q Consensus 535 ~AA~aL~nLa~----~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL--~~~~~~V 608 (2054)
.|++++.++.. +.+..+..+ ....+.|+.++ ++++++|+.+..+|..+......-..+.+..++ .+++..+
T Consensus 258 ea~~~i~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~I 334 (591)
T 2vgl_B 258 SAVKVLMKFLELLPKDSDYYNMLL--KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYV 334 (591)
T ss_dssp HHHHHHHHSCCSCCBTTBSHHHHH--HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHH
T ss_pred HHHHHHHHHhhccCCCHHHHHHHH--HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHH
Confidence 99999999863 223333322 34567888766 478999999999999998753211111111111 2344677
Q ss_pred HHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh
Q 000145 609 KAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688 (2054)
Q Consensus 609 ~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL 688 (2054)
+..+.+.+..+.... .+. ..++.|..++++.+.+.|..+++++..++...++.. ...++.|++++
T Consensus 335 r~~al~~L~~l~~~~----nv~------~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll 399 (591)
T 2vgl_B 335 KLEKLDIMIRLASQA----NIA------QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLI 399 (591)
T ss_dssp HHHHHHHHHHTCCSS----THH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCChh----hHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHH
Confidence 887777776654221 111 247778888988999999999999999997544332 34679999999
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHHHHHHHHhhCChHHHHHHHhcCcH
Q 000145 689 TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETAVAALANLLSDPDIAAEVLLEDVV 767 (2054)
Q Consensus 689 ~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I 767 (2054)
++..+.++..+..++.++....+. . ...++..|++.+.+ .+++++..++|+|+..+..-.. ....+
T Consensus 400 ~~~~~~v~~e~i~~l~~ii~~~p~---~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-----~~~~l 466 (591)
T 2vgl_B 400 QTKVNYVVQEAIVVIRDIFRKYPN---K-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-----ADELL 466 (591)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHSCS---S-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-----HHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHCcc---h-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-----HHHHH
Confidence 999999999999999998763333 2 24578889888875 6788999999999988753221 11334
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 768 SALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 768 ~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
+.+++-+.+.++.+|..+..++.++....|... ...+..++........+...+..|...++.+..
T Consensus 467 ~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~~~--------~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 467 ESFLEGFHDESTQVQLTLLTAIVKLFLKKPSET--------QELVQQVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp HHHSTTCSSSCHHHHHHHHHHHHHHHTTCCSTT--------HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHhcCchHH--------HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence 445544556689999999999999998654210 124455666553333455678888888777753
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-11 Score=160.78 Aligned_cols=515 Identities=12% Similarity=0.113 Sum_probs=338.0
Q ss_pred cCcHHHHHHHHccCCHHHHHHHH-HHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCCh
Q 000145 83 AQAMPLFISILRSGTPLAKVNVA-ATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDH 161 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA-~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~ 161 (2054)
.|-+..+-+.|++++.+.+..++ +++..+..+.+. ..+++.+++++.+++.++|+.+.-++..++.. .+
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~----~~ 81 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKS----QP 81 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHH----SH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc----Cc
Confidence 36678888889988877776654 444555444432 24578888999999999999999999998852 22
Q ss_pred hHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHH
Q 000145 162 VGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2054)
Q Consensus 162 ~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~ 241 (2054)
+ .+ .-++..+.+-|.+++ +.++..|+++|+++.... -.. ..++.+..++.+.++.+|..|+.++.
T Consensus 82 e---~~--~l~~n~l~kdL~~~n---~~ir~~AL~~L~~i~~~~--~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~ 146 (591)
T 2vgl_B 82 D---MA--IMAVNSFVKDCEDPN---PLIRALAVRTMGCIRVDK--ITE-----YLCEPLRKCLKDEDPYVRKTAAVCVA 146 (591)
T ss_dssp H---HH--HTTHHHHGGGSSSSS---HHHHHHHHHHHHTCCSGG--GHH-----HHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred h---HH--HHHHHHHHHHcCCCC---HHHHHHHHHHHHcCChHH--HHH-----HHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1 11 125677777776544 678889999988886321 111 13567888999999999999999999
Q ss_pred HHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhh
Q 000145 242 RLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQ 321 (2054)
Q Consensus 242 nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~ 321 (2054)
+++..+++ .+.+.+.++.+..++. +.+..++..|..+|..+...+++.+..-...+.+..|+..+
T Consensus 147 ~i~~~~p~---~~~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l----------- 211 (591)
T 2vgl_B 147 KLHDINAQ---MVEDQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTAL----------- 211 (591)
T ss_dssp HHHHSSCC---CHHHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHH-----------
T ss_pred HHHhhChh---hcccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcC-----------
Confidence 99965544 2233578899999997 67888999999999888775221100000000011111111
Q ss_pred hhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCC
Q 000145 322 RGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKP 401 (2054)
Q Consensus 322 ~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~ 401 (2054)
..
T Consensus 212 ------------------------------------------------------------------------------~~ 213 (591)
T 2vgl_B 212 ------------------------------------------------------------------------------NE 213 (591)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred ------------------------------------------------------------------------------CC
Confidence 11
Q ss_pred CChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhccc---CccchhhhhccccHHH
Q 000145 402 HDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRR---EVGIWEAIGKREGIQL 478 (2054)
Q Consensus 402 ~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~---s~e~r~~Ive~ggIp~ 478 (2054)
.++ ..|...++.++.++..+.- .....++.+..++++.++.++..|+.++..+... +++....+. ....+.
T Consensus 214 ~~~-~~q~~il~~l~~l~~~~~~----~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~ 287 (591)
T 2vgl_B 214 CTE-WGQIFILDCLSNYNPKDDR----EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPP 287 (591)
T ss_dssp CCH-HHHHHHHHHHHTSCCCSHH----HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHH
T ss_pred CCc-hHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHH
Confidence 111 1333344444433321110 0123456777778888999999999999998742 223222222 245577
Q ss_pred HHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcC
Q 000145 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAG 558 (2054)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~G 558 (2054)
|+.++. +++.+|..++.+|..+....++.- . ..+..+..+ .+.+..+|..+++.|.+++... ... .
T Consensus 288 L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~----~-~~~~~~~~~-~~d~~~Ir~~al~~L~~l~~~~-nv~------~ 353 (591)
T 2vgl_B 288 LVTLLS-GEPEVQYVALRNINLIVQKRPEIL----K-QEIKVFFVK-YNDPIYVKLEKLDIMIRLASQA-NIA------Q 353 (591)
T ss_dssp HHHHTT-SCHHHHHHHHHHHHHHHHHCCSTT----T-TCTTTTSCC-TTSCHHHHHHHHHHHHHTCCSS-THH------H
T ss_pred HHHHhc-CCccHHHHHHHHHHHHHHhChHHH----H-HHHHhheec-cCChHHHHHHHHHHHHHHCChh-hHH------H
Confidence 777664 788999999999999988544321 1 122222222 2445899999999999997532 222 2
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc
Q 000145 559 AVPAFLWLLKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA 635 (2054)
Q Consensus 559 aI~aLV~LLkS~~~evq~~AA~AL~nLs~~~---e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~ 635 (2054)
.++.|...+++.+.+.+..+++++++++..- ....++.|++++++..+.+...+..+++.+....+. ..
T Consensus 354 iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~--------~~ 425 (591)
T 2vgl_B 354 VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN--------KY 425 (591)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS--------SC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc--------hH
Confidence 3566778888899999999999999998642 245789999999999888888777777776532211 12
Q ss_pred ccchHHHHHHhcc-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCccc
Q 000145 636 NKGLRSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKT 714 (2054)
Q Consensus 636 ~GaI~~LV~LLks-~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d 714 (2054)
..++..|+..+.+ .+++++..++|+|+..+..-++ ....+..+++-+.+.++.+|..+..++.++....+.
T Consensus 426 ~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~-- 497 (591)
T 2vgl_B 426 ESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS-- 497 (591)
T ss_dssp CTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS--
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch--
Confidence 4468888888864 4688999999999988763221 113344444444567889999999999999974443
Q ss_pred chhHHHHhcCChhhHHhhh-hc-CCHHHHHHHHHHHHHhhCChHH
Q 000145 715 TNKMSYIAEGDVKPLIKLA-KT-SSIDAAETAVAALANLLSDPDI 757 (2054)
Q Consensus 715 ~~r~~I~~~gaV~~Lv~LL-~s-~d~~Vre~Al~AL~NLa~~~e~ 757 (2054)
.. ...+..++... .+ .+.++|..|...+.-+..+++.
T Consensus 498 -~~-----~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~~~ 536 (591)
T 2vgl_B 498 -ET-----QELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVT 536 (591)
T ss_dssp -TT-----HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTH
T ss_pred -HH-----HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCHHH
Confidence 11 11344455554 33 6889999999998877665543
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-11 Score=156.43 Aligned_cols=445 Identities=14% Similarity=0.123 Sum_probs=303.0
Q ss_pred CchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHHHHh
Q 000145 34 PESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVL 111 (2054)
Q Consensus 34 ~~~t~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL~~L 111 (2054)
+.+..+.|..+.+++.. +.-.++|..|+..|..+++. ++..+.. +|++.|+..|+.. |.++...+..+|.++
T Consensus 16 ~qs~~etI~~L~~Rl~~-~tl~eDRR~Av~~Lk~~sk~---y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l 89 (651)
T 3grl_A 16 QHTEAETIQKLCDRVAS-STLLDDRRNAVRALKSLSKK---YRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNI 89 (651)
T ss_dssp --CHHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTTT---TTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhh-ccchhHHHHHHHHHHHHHHH---hHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 45677889999999977 46788999999999999864 4555654 7999999999885 788888999999765
Q ss_pred -ccCchh-----------------HHHHH-hcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHc-C
Q 000145 112 -CKDEDL-----------------RLKVL-LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTE-G 171 (2054)
Q Consensus 112 -s~~ee~-----------------r~~v~-~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~a-G 171 (2054)
+.+++. ...+. ..+.|+.|+.+|..+|..+|..+++.|..|+.+ +.+...+.+... +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~---r~~~~Q~~Il~~p~ 166 (651)
T 3grl_A 90 ISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ---LGPQVQQIILVSPM 166 (651)
T ss_dssp HCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---SHHHHHHHHHHSTT
T ss_pred hCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc---CcHHHHHHHHhCcc
Confidence 433221 11222 348899999999999999999999999999984 345577888855 9
Q ss_pred cHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCH----HHHHHHHHHHHHHHhhc
Q 000145 172 VVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNA----AAQSNAASLLARLMLAF 247 (2054)
Q Consensus 172 ~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~----evq~~A~~aL~nLs~~~ 247 (2054)
+|+.|+++|.++. ..++..++..|.+|+.++...++.+.-.|+++.|..++..... .+.+.|+.+|.+|...+
T Consensus 167 gi~~Lv~lL~d~r---E~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N 243 (651)
T 3grl_A 167 GVSRLMDLLADSR---EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN 243 (651)
T ss_dssp HHHHHHGGGGCSS---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHhCch---HHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC
Confidence 9999999998765 4689999999999999999998899999999999999987543 78899999999999888
Q ss_pred CCCcchhcccchHHHHHHHhccCCCh-----hHHHH---HHHHHHHHhhc------cHHHHHHHHhcCCHHHHHHhhcCC
Q 000145 248 GDSIPTVIDSGAVKALVQLVGQNNDI-----SVRAS---AADALEALSSK------SIKAKKAVVAADGVPVLIGAIVAP 313 (2054)
Q Consensus 248 ~~~r~~i~~sGaL~~LL~LL~s~~d~-----~Vr~~---Aa~aL~nLs~~------s~e~Rk~I~eaggL~~LIeLL~s~ 313 (2054)
+.++..+.+.|+++.|..+++.+.+. ..... +..++.-|... +..+++.+.+.|+++.|++++..+
T Consensus 244 ~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~ 323 (651)
T 3grl_A 244 NSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMAT 323 (651)
T ss_dssp HHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccC
Confidence 88889999999999999999743221 01112 34455555443 346788999999999999998875
Q ss_pred chhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHH
Q 000145 314 SKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIED 393 (2054)
Q Consensus 314 s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~ 393 (2054)
... ..++..|+.+++.+..+-+..-..+.+.. . +.. . ....+..
T Consensus 324 ~~p-------~~i~~~Al~tla~~irgN~~~Q~~fa~~~----------------------v---p~~---~-~~p~li~ 367 (651)
T 3grl_A 324 GVP-------ADILTETINTVSEVIRGCQVNQDYFASVN----------------------A---PSN---P-PRPAIVV 367 (651)
T ss_dssp SCC-------HHHHHHHHHHHHHHHTTCHHHHHHHHHCE----------------------E---SSS---S-CEEHHHH
T ss_pred CCC-------HHHHHHHHHHHHHHHhCCHHHHHHHhhcc----------------------C---CCC---C-CcChHHH
Confidence 311 12556677777765543332211111100 0 000 0 0112334
Q ss_pred HHHHHcCCCChhhHHHHHHHHHHHh-hcChhhhHHHhhc------c-------hHHHHHHHhccCCHHHHHHHHHHHHHh
Q 000145 394 ILVMLLKPHDNKLVQERVLEAMASL-YGNIFLSQWVSHA------E-------AKKVLIGLITMATADVREYLILSLTKL 459 (2054)
Q Consensus 394 ~Lv~LLk~~~~e~Vq~~Aa~AL~~L-~~n~~~~~~L~~~------g-------~I~~LI~LL~ssd~evq~~Aa~AL~~L 459 (2054)
.|+.++.+.....+|..++.++... ++|+..+..+... + .-..+..-+-+.++..--.|+..|.++
T Consensus 368 lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hl 447 (651)
T 3grl_A 368 LLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHA 447 (651)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHH
Confidence 5556666666667888888888776 5666555554432 0 112344444455665555577788888
Q ss_pred cccCccchhhhhc------cc-----cHHHHHhhhcC-CChhhhHHHHHHHHHHhhhccchhhHHHhhCC-CchHhhhhh
Q 000145 460 CRREVGIWEAIGK------RE-----GIQLLISLLGL-SSEQHQEYAVQLIAILTEQVDDSKWAITAAGG-IPPLVQLLE 526 (2054)
Q Consensus 460 s~~s~e~r~~Ive------~g-----gIp~LV~LL~s-~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGa-Ip~LV~LL~ 526 (2054)
-.++++.+..+.+ .| .++.+..++.. .++.++..=+..|+....++++.-..+...|. ++.|+..+.
T Consensus 448 l~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~l~~L~~~i~ 527 (651)
T 3grl_A 448 LQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIA 527 (651)
T ss_dssp HTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCchHHHHHHHHH
Confidence 8776666543322 11 24444555543 23444444445555555555655555665553 777777664
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-12 Score=153.62 Aligned_cols=253 Identities=11% Similarity=0.093 Sum_probs=201.3
Q ss_pred ccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHH
Q 000145 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2054)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r 551 (2054)
..+.++.|+..++++++.+|..|+++|++++. .+.++.|+++|+++++.+|..|+++|+.+........
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 44678999999999999999999999999873 2467889999999999999999999999975322211
Q ss_pred HHHHHcCChHHHH-HhhccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchH
Q 000145 552 ACVESAGAVPAFL-WLLKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQED 627 (2054)
Q Consensus 552 ~~I~e~GaI~aLV-~LLkS~~~evq~~AA~AL~nLs~~~---e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d 627 (2054)
. .++.|. .+++++++.++..++++|+++.... ....++.|.++++++++.++..+..+|+.+.
T Consensus 90 ~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~------- 156 (280)
T 1oyz_A 90 N------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIN------- 156 (280)
T ss_dssp H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred H------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcC-------
Confidence 1 223333 2467889999999999999997432 3467899999999999999999988888642
Q ss_pred HHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 000145 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2054)
Q Consensus 628 ~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs 707 (2054)
..+.++.|+.+++++++.+|..|+++|.++.... ..+++.|..+++++++.+|..|+++|+++.
T Consensus 157 -------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 157 -------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 2347999999999999999999999999985321 346789999999999999999999999986
Q ss_pred CCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcC-CCHHHHHHHH
Q 000145 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNAS 786 (2054)
Q Consensus 708 ~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s-~~~evr~~Aa 786 (2054)
. ..+++.|+.++.+.+ ++..|+.+|+.+.. +..++.|..++.+ .++++...+.
T Consensus 221 ~--------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~~~~~~~ 274 (280)
T 1oyz_A 221 D--------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNEIITSAI 274 (280)
T ss_dssp C--------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCHHHHHHH
T ss_pred C--------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcHHHHHHH
Confidence 2 237888999998754 88899999998753 3678899998865 4677777777
Q ss_pred HHHH
Q 000145 787 RALH 790 (2054)
Q Consensus 787 ~AL~ 790 (2054)
.+|.
T Consensus 275 ~~l~ 278 (280)
T 1oyz_A 275 DKLK 278 (280)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 7764
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-12 Score=149.47 Aligned_cols=254 Identities=15% Similarity=0.062 Sum_probs=199.2
Q ss_pred hhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc--h
Q 000145 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--S 591 (2054)
Q Consensus 514 ~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e--~ 591 (2054)
..+.++.|++.|.++++.+|..|+++|+++.. .++++.|+.+++++++.+|..++++|+++..... .
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 45689999999999999999999999999863 3468899999999999999999999999864321 1
Q ss_pred hhHHHHH-HHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChh
Q 000145 592 ATINQLL-ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 592 ~~Ip~Lv-~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e 670 (2054)
..++.|. .++++.++.++..+.++|+.+...... .....++.|+.+++++++.+|..|+.+|.++..
T Consensus 90 ~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~--------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 90 NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI--------YSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc--------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 2233343 245788889999999999987532110 112358899999999999999999999998764
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000145 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2054)
Q Consensus 671 ~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~N 750 (2054)
.+.++.|+.++++.++.+|..|+++|+++.... ..+++.|+.++++.++.++..|+.+|++
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDN------------SDIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC------------HHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc------------HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999985311 1367889999999999999999999998
Q ss_pred hhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHH
Q 000145 751 LLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVA 830 (2054)
Q Consensus 751 La~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~ 830 (2054)
+. .+..++.|..++.+.+ +|..|+++|.++... ..++.|..++.+.++ .....
T Consensus 219 ~~----------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~--------------~~~~~L~~~l~~~~~-~~~~~ 271 (280)
T 1oyz_A 219 RK----------DKRVLSVLCDELKKNT--VYDDIIEAAGELGDK--------------TLLPVLDTMLYKFDD-NEIIT 271 (280)
T ss_dssp TT----------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--------------GGHHHHHHHHTTSSC-CHHHH
T ss_pred hC----------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--------------hhhHHHHHHHhcCCC-cHHHH
Confidence 86 4568899999998754 899999999998752 467888888865443 33455
Q ss_pred HHHHHH
Q 000145 831 DALEVV 836 (2054)
Q Consensus 831 ~AL~AL 836 (2054)
.+..+|
T Consensus 272 ~~~~~l 277 (280)
T 1oyz_A 272 SAIDKL 277 (280)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555554
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-09 Score=143.01 Aligned_cols=493 Identities=14% Similarity=0.096 Sum_probs=263.7
Q ss_pred CChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcC
Q 000145 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204 (2054)
Q Consensus 125 GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~ 204 (2054)
.+....++++.+++.+.+.-+.-.+..++.. +++ ...+ ++..|.+-|.+++ +.++..|+++|+++...
T Consensus 70 ~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~----~~e-~~~l----~in~l~kDL~~~n---~~vr~lAL~~L~~i~~~ 137 (618)
T 1w63_A 70 FGQLECLKLIASQKFTDKRIGYLGAMLLLDE----RQD-VHLL----MTNCIKNDLNHST---QFVQGLALCTLGCMGSS 137 (618)
T ss_dssp GGHHHHHHHHHSSSHHHHHHHHHHHHHHCCC----CHH-HHHH----HHHHHHHHHSCSS---SHHHHHHHHHHHHHCCH
T ss_pred chHHHHHHHHcCCchHHHHHHHHHHHHHhCC----CcH-HHHH----HHHHHHHhcCCCC---HhHHHHHHHHHHhcCCH
Confidence 4567778888889999999988888888852 222 1111 5677888887655 46889999999999742
Q ss_pred CCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHH
Q 000145 205 KDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALE 284 (2054)
Q Consensus 205 ~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~ 284 (2054)
.+. ...++.+.++|.+.++.+|..|+.++.+++..+++.. .+.++.+..++. +.+..++..|..+|.
T Consensus 138 ------~~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~-D~d~~V~~~Al~~L~ 204 (618)
T 1w63_A 138 ------EMC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLN-EKNHGVLHTSVVLLT 204 (618)
T ss_dssp ------HHH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTT-CCCHHHHHHHHHHHH
T ss_pred ------HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhC-CCCHhHHHHHHHHHH
Confidence 122 2347788899999999999999999999997665432 256777778887 678899999999999
Q ss_pred HHhhccHHHHHHHHhcCCHHHHHHhhcCC-----chhhhhh-hhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCch
Q 000145 285 ALSSKSIKAKKAVVAADGVPVLIGAIVAP-----SKECMQG-QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLA 358 (2054)
Q Consensus 285 nLs~~s~e~Rk~I~eaggL~~LIeLL~s~-----s~e~~q~-~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~ 358 (2054)
.+...+++..+.+. ..++.++..+.+- .+++.-+ ..+.-.|...+..|..++...+..
T Consensus 205 ~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-------------- 268 (618)
T 1w63_A 205 EMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-------------- 268 (618)
T ss_dssp HHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH--------------
T ss_pred HHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH--------------
Confidence 99876555433332 4567776655431 1111000 001112333333333332111000
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCC-----ChhhHHHHHHHHHHHhhcChhhhHHHhhcch
Q 000145 359 APVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPH-----DNKLVQERVLEAMASLYGNIFLSQWVSHAEA 433 (2054)
Q Consensus 359 ~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~-----~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~ 433 (2054)
...+.++|..+++.. ....+...++.++..+..++... ..+
T Consensus 269 -----------------------------~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~-----~~a 314 (618)
T 1w63_A 269 -----------------------------SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR-----VLA 314 (618)
T ss_dssp -----------------------------HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH-----HHH
T ss_pred -----------------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH-----HHH
Confidence 001112222222110 01123334444444332221110 012
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHH
Q 000145 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513 (2054)
Q Consensus 434 I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~ 513 (2054)
++.|..++.++++.+|..|+.+|..++...++ .+
T Consensus 315 ------------------------------------------~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~ 348 (618)
T 1w63_A 315 ------------------------------------------INILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AV 348 (618)
T ss_dssp ------------------------------------------HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HH
T ss_pred ------------------------------------------HHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HH
Confidence 33444444444445555555555555442211 11
Q ss_pred hhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh---c
Q 000145 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA---D 590 (2054)
Q Consensus 514 ~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~---e 590 (2054)
. .....++.+|.+++..+|..|..+|..++.... .... ++.|...+.+.+.+.+..++.+++.++..- .
T Consensus 349 ~-~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n-v~~i------v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~ 420 (618)
T 1w63_A 349 Q-RHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN-IRGM------MKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK 420 (618)
T ss_dssp G-GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS-THHH------HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred H-HHHHHHHHHccCCChhHHHHHHHHHHHHccccc-HHHH------HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH
Confidence 1 122344444455555555555555555543211 1111 234444444455555555555555555421 1
Q ss_pred hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc--CCHHHHHHHHHHHHHHhhcC
Q 000145 591 SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS--SNEENQEYAASVLADLFSMR 668 (2054)
Q Consensus 591 ~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks--~s~evre~Aa~ALanLas~~ 668 (2054)
...++.++++++.....+...+..++..+....+ +. ...++..|+.++.+ ..+.....++|+++..+..-
T Consensus 421 ~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p--~l------~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i 492 (618)
T 1w63_A 421 RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSV--EM------HAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLL 492 (618)
T ss_dssp HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSC--ST------HHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCh--hH------HHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHh
Confidence 2234555555554443333333444443332111 11 01246667777765 23444556889988886521
Q ss_pred hhh------hhhhhhCCCHHHHHHHhc--cCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHH
Q 000145 669 QDI------CGSLATDEIVNPCMRLLT--SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDA 740 (2054)
Q Consensus 669 ~e~------r~~Iv~~g~V~~Lv~LL~--dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~V 740 (2054)
... ...+....+++.|..+++ ..++.+|..+..++.++....+. .+.. +...|-....+.+.++
T Consensus 493 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~---~~~~-----l~~~L~~~~~~~d~ev 564 (618)
T 1w63_A 493 VSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC---TVNR-----IKKVVSIYGSSIDVEL 564 (618)
T ss_dssp TTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS---CHHH-----HHHHHHHHTTCSCHHH
T ss_pred cccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc---hHHH-----HHHHHHHhcCCCCHHH
Confidence 000 000001124555666664 56889999999999999975443 2221 1122334456788999
Q ss_pred HHHHHHHHHHhhCChHHHHHHH
Q 000145 741 AETAVAALANLLSDPDIAAEVL 762 (2054)
Q Consensus 741 re~Al~AL~NLa~~~e~r~~Iv 762 (2054)
|..|...+.-+..++..+..+.
T Consensus 565 rdRA~~y~~ll~~~~~~~~~vl 586 (618)
T 1w63_A 565 QQRAVEYNALFKKYDHMRSALL 586 (618)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHh
Confidence 9999998888776665544443
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-09 Score=141.90 Aligned_cols=433 Identities=14% Similarity=0.103 Sum_probs=295.0
Q ss_pred HHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccH
Q 000145 397 MLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGI 476 (2054)
Q Consensus 397 ~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggI 476 (2054)
+-+.++++ .++..|+++|+++... +.. ...++.+..++.+.++.++..|+.++.++....++.. .+.+
T Consensus 114 kDL~~~n~-~vr~lAL~~L~~i~~~-~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~ 181 (618)
T 1w63_A 114 NDLNHSTQ-FVQGLALCTLGCMGSS-EMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFL 181 (618)
T ss_dssp HHHSCSSS-HHHHHHHHHHHHHCCH-HHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGG
T ss_pred HhcCCCCH-hHHHHHHHHHHhcCCH-HHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHH
Confidence 33444433 4888888999988642 211 2456778889999999999999999999987655432 2567
Q ss_pred HHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc---------------CCHHHHHHHHHHHH
Q 000145 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA---------------GSQKAREVAAHVLW 541 (2054)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s---------------~s~~Vre~AA~aL~ 541 (2054)
+.+..++.+.|+.++..|+.+|..++..+++....+ ...++.++++|++ .++-.+.....+|+
T Consensus 182 ~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~ 259 (618)
T 1w63_A 182 PATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLR 259 (618)
T ss_dssp GGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHH
Confidence 888889999999999999999999987543321112 2467788887764 37888999999999
Q ss_pred HHhcCChhHHHHHHHcCChHHHHHhhc------cCChhHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCCcchHHHHH
Q 000145 542 ILCCHSEDIRACVESAGAVPAFLWLLK------SGGPKGQDASAMALTKLIRAAD--SATINQLLALLLGDSPSSKAHVI 613 (2054)
Q Consensus 542 nLa~~sd~~r~~I~e~GaI~aLV~LLk------S~~~evq~~AA~AL~nLs~~~e--~~~Ip~Lv~LL~~~~~~V~~~a~ 613 (2054)
.++..++... ....+.|..+++ +.+..+...+++++.++..... ..+++.|.+++.+.+++++..+.
T Consensus 260 ~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL 334 (618)
T 1w63_A 260 ILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVAL 334 (618)
T ss_dssp HHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHH
T ss_pred HhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 9987654322 234455555543 2345789999999988754321 24678899999999999999999
Q ss_pred HHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCH
Q 000145 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQ 693 (2054)
Q Consensus 614 ~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~ 693 (2054)
.+++.+.... ++.++ .....++..+.+++..+|..|..+|..++. +.+... +++.|...+.+.+.
T Consensus 335 ~~L~~i~~~~--p~~~~------~~~~~i~~~l~d~d~~Ir~~alelL~~l~~--~~nv~~-----iv~eL~~~l~~~d~ 399 (618)
T 1w63_A 335 TSLLKTVQTD--HNAVQ------RHRSTIVDCLKDLDVSIKRRAMELSFALVN--GNNIRG-----MMKELLYFLDSCEP 399 (618)
T ss_dssp HHHHHHHHHH--HHHHG------GGHHHHHHGGGSSCHHHHHHHHHHHHHHCC--SSSTHH-----HHHHHHHHHHHCCH
T ss_pred HHHHHHHhhC--HHHHH------HHHHHHHHHccCCChhHHHHHHHHHHHHcc--cccHHH-----HHHHHHHHHHhCCH
Confidence 9998887432 22221 246678888999999999999999999986 222222 45888888889999
Q ss_pred HHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHH
Q 000145 694 MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTR 772 (2054)
Q Consensus 694 ~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~ 772 (2054)
.+|..+..++++++...+. .... .++.|++++......++.+++.++..+.. +|+.+.. +++.|..
T Consensus 400 e~r~~~v~~I~~la~k~~~--~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~-----~v~~L~~ 466 (618)
T 1w63_A 400 EFKADCASGIFLAAEKYAP--SKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY-----TVQRLYK 466 (618)
T ss_dssp HHHHHHHHHHHHHHHSSCC--CHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCc--cHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHH-----HHHHHHH
Confidence 9999999999999974333 2222 57788899988776677777777877764 5665543 4556777
Q ss_pred HHcC--CCHHHHHHHHHHHHHhhhcCCCc---hhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCC
Q 000145 773 VLAE--GTSEGKKNASRALHQLLKHFPVG---DVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLN 847 (2054)
Q Consensus 773 LL~s--~~~evr~~Aa~AL~nL~~~~~~~---e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~ 847 (2054)
++.+ .+..+.+.++|+++..+..-+.+ +.....+.....+..|..++....++..++..++.+++.+....+.
T Consensus 467 ~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~-- 544 (618)
T 1w63_A 467 AILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC-- 544 (618)
T ss_dssp HHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--
T ss_pred HHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--
Confidence 7764 23444557999999998631100 0000001112344555555543345566788888888877642111
Q ss_pred ccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHh
Q 000145 848 FTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRL 888 (2054)
Q Consensus 848 ~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L 888 (2054)
. .+.-...|..+..+.++++|++|.+.+.-+
T Consensus 545 -~---------~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 545 -T---------VNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp -C---------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -h---------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 0 111123345556678889999999876654
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.38 E-value=7e-10 Score=141.96 Aligned_cols=406 Identities=15% Similarity=0.141 Sum_probs=278.8
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhcc--CCHHHHHHHHHHHHHhcccCccc-----------------h
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM--ATADVREYLILSLTKLCRREVGI-----------------W 467 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~s--sd~evq~~Aa~AL~~Ls~~s~e~-----------------r 467 (2054)
=|..|+..|-.++.+ .+.-+...+++.|+..++. .|.++.+.+...|.++...+.+. .
T Consensus 38 DRR~Av~~Lk~~sk~---y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (651)
T 3grl_A 38 DRRNAVRALKSLSKK---YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFT 114 (651)
T ss_dssp HHHHHHHHHHHTTTT---TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHH
Confidence 456777777776532 1223345678888888876 46777778888887755432211 0
Q ss_pred -hhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc-hhhHHHh-hCCCchHhhhhhcCCHHHHHHHHHHHHHHh
Q 000145 468 -EAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD-SKWAITA-AGGIPPLVQLLEAGSQKAREVAAHVLWILC 544 (2054)
Q Consensus 468 -~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e-~r~~I~~-aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa 544 (2054)
..+.+.++|+.|+.++++.+..+|.+++..|..|+...++ .+.+|.. .+|++.|+.+|.+....+|..+...|.+|+
T Consensus 115 d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt 194 (651)
T 3grl_A 115 EIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALT 194 (651)
T ss_dssp HHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 2334668999999999999999999999999999987766 7888885 499999999999999999999999999999
Q ss_pred cCChhHHHHHHHcCChHHHHHhhccCCh----hHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcc-----
Q 000145 545 CHSEDIRACVESAGAVPAFLWLLKSGGP----KGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPS----- 607 (2054)
Q Consensus 545 ~~sd~~r~~I~e~GaI~aLV~LLkS~~~----evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~----- 607 (2054)
.++.++++.++-.|+++.|+.+++.+.. .+...+...|.||.+.. +.+.++.|..+++.+.+.
T Consensus 195 ~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~ 274 (651)
T 3grl_A 195 RSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSA 274 (651)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCH
T ss_pred cCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHH
Confidence 9999999999999999999999987654 78889999999998763 456788899998755432
Q ss_pred -hHHH---HHHHHHHHHhhhcc---hHHHHhhhhcccchHHHHHHhccC--CHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000145 608 -SKAH---VIKVLGHVLTMALQ---EDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATD 678 (2054)
Q Consensus 608 -V~~~---a~~AL~~La~~~~~---~d~~~~~l~~~GaI~~LV~LLks~--s~evre~Aa~ALanLas~~~e~r~~Iv~~ 678 (2054)
.... +..+++.|...... ....+..+.+.|++..|++++.++ ...++..|..+++.+..+++.++..+.+.
T Consensus 275 Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~ 354 (651)
T 3grl_A 275 QKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASV 354 (651)
T ss_dssp HHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence 2222 34455555443221 334566688999999999998876 68899999999999999999988887754
Q ss_pred C---------CHHHHHHHhccC-CHHHHHHHHHHHHHhhCCCCcccchhHHHHhc----------CChhh---HHhhhhc
Q 000145 679 E---------IVNPCMRLLTSN-TQMVATQSARALGALSRPTKTKTTNKMSYIAE----------GDVKP---LIKLAKT 735 (2054)
Q Consensus 679 g---------~V~~Lv~LL~dg-s~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~----------gaV~~---Lv~LL~s 735 (2054)
. .+..|+.++.+. ...+|..|+.++......++. .+..+... ..+.+ |..-+-+
T Consensus 355 ~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~---~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s 431 (651)
T 3grl_A 355 NAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQK---GQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFS 431 (651)
T ss_dssp EESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHH---HHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTS
T ss_pred cCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHH---HHHHHHHhcCCcccccCCCCCCcchhhhhhhcc
Confidence 3 233344445443 568899999999999875432 22222221 11111 3333444
Q ss_pred CCHHHHHHHHHHHHHhhC-ChHHHHHHHh-----------cCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhhcCCCchhH
Q 000145 736 SSIDAAETAVAALANLLS-DPDIAAEVLL-----------EDVVSALTRVLAEG-TSEGKKNASRALHQLLKHFPVGDVL 802 (2054)
Q Consensus 736 ~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~-----------~g~I~~LV~LL~s~-~~evr~~Aa~AL~nL~~~~~~~e~i 802 (2054)
.|+--.--|+.+|..+.. +++.++.+.+ .-.++.++.++..+ +++++-.=...|+--..+.| +.+
T Consensus 432 ~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p--~AV 509 (651)
T 3grl_A 432 TDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCP--IAV 509 (651)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCH--HHH
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCCh--HHH
Confidence 555333347777777776 4555554433 11366677766543 45554433344444344332 333
Q ss_pred hhhhhhhhhHHHHHHhhc
Q 000145 803 KGNAQCRFVVLTLVDSLN 820 (2054)
Q Consensus 803 ~~~i~~~g~v~~LV~LL~ 820 (2054)
.+-+.....++.|+..+.
T Consensus 510 ~dFL~~~s~l~~L~~~i~ 527 (651)
T 3grl_A 510 THFLHNSANVPFLTGQIA 527 (651)
T ss_dssp HHHHHSTTHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHH
Confidence 333333556788887764
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.4e-11 Score=131.66 Aligned_cols=189 Identities=22% Similarity=0.262 Sum_probs=161.9
Q ss_pred HcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhc
Q 000145 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA 635 (2054)
Q Consensus 556 e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~ 635 (2054)
+.+.++.|+.+++++++.+|..++.+|..+. +...++.|++++.++++.++..+..+|+.+. .
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------------~ 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG---DERAVEPLIKALKDEDAWVRRAAADALGQIG--------------D 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------------C
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------------C
Confidence 3568999999999999999999999999875 3478999999999999999999998888652 2
Q ss_pred ccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccc
Q 000145 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT 715 (2054)
Q Consensus 636 ~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~ 715 (2054)
.+.++.|+.+++++++.+|..++.+|.++.. .+.++.|++++.+.++.+|..|+.+|+++.. +
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---- 142 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--E---- 142 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--H----
Confidence 3578999999999999999999999999864 4578999999999999999999999999853 2
Q ss_pred hhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 716 ~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
+.++.|..++++.++.++..|+.+|+.+. .+.+++.|..++.+.++.+|..|.++|.++..+
T Consensus 143 --------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 143 --------RAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp --------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 37888999999999999999999999885 245788899999999999999999999999875
Q ss_pred C
Q 000145 796 F 796 (2054)
Q Consensus 796 ~ 796 (2054)
.
T Consensus 205 ~ 205 (211)
T 3ltm_A 205 N 205 (211)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=130.24 Aligned_cols=186 Identities=17% Similarity=0.194 Sum_probs=162.0
Q ss_pred cccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHH
Q 000145 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2054)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~ 552 (2054)
.+.++.|++++++++..+|..++..|..+.. .++++.|+++|.++++.+|..++.+|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4678999999999999999999999998764 2578899999999999999999999999863
Q ss_pred HHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
.++++.|+.+++++++.++..++++|+++. +.+.++.|++++.++++.++..+..+|+.+.
T Consensus 80 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------------ 140 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIG---DERAVEPLIKALKDEDWFVRIAAAFALGEIG------------ 140 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------------
Confidence 457899999999999999999999999885 3468999999999999999999999998752
Q ss_pred hhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 633 l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
....++.|+.+++++++.+|..|+.+|..+.. ..+++.|.++++++++.+|..|..+|.++..
T Consensus 141 --~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 141 --DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 23468999999999999999999999999854 4567889999999999999999999999976
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-10 Score=126.72 Aligned_cols=186 Identities=23% Similarity=0.275 Sum_probs=161.0
Q ss_pred cCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcc
Q 000145 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN 636 (2054)
Q Consensus 557 ~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~ 636 (2054)
.+..+.++.+++++++.+|..++.+|..+. +...++.|++++.++++.++..+..+|+.+. ..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~---~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~--------------~~ 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG---DERAVEPLIKALKDEDAWVRRAAADALGQIG--------------DE 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--------------CG
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------------CH
Confidence 346788999999999999999999999875 3468999999999999999999888887652 23
Q ss_pred cchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 637 KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 637 GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
..++.|+.+++++++.+|..|+++|.++.. .+.++.|++++.+.++.+|..|+++|+++..
T Consensus 76 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------- 136 (201)
T 3ltj_A 76 RAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------- 136 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence 478999999999999999999999999864 4578999999999999999999999999853
Q ss_pred hHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 000145 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~ 794 (2054)
.+.++.|+.++++.++.++..|+.+|+.+. .+.+++.|..++.+.++.+|..|.++|.++..
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIG----------GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------SHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------chhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 237888999999999999999999999884 23478889999999999999999999998754
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-10 Score=129.12 Aligned_cols=186 Identities=17% Similarity=0.195 Sum_probs=163.5
Q ss_pred ccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHH
Q 000145 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIR 551 (2054)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r 551 (2054)
..+..+.++++++++++.+|..|+.+|..+.. .+.++.|+++|+++++.+|..++.+|+.+..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 45778999999999999999999999998864 2467899999999999999999999999853
Q ss_pred HHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000145 552 ACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2054)
Q Consensus 552 ~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~ 631 (2054)
.++++.|+.+++++++.+|..++++|+++. +.+.++.|.+++.+.++.++..+.++|+.+.
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------- 135 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG---DERAVEPLIKALKDEDWFVRIAAAFALGEIG----------- 135 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT-----------
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence 357899999999999999999999999885 3468999999999999999999999998752
Q ss_pred hhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 000145 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs 707 (2054)
..+.++.|+.+++++++.+|..|+.+|.++.. ..+++.|..+++++++.+|..|..+|.++.
T Consensus 136 ---~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 136 ---DERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 23578999999999999999999999999854 346788999999999999999999999885
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.16 E-value=9.3e-09 Score=127.69 Aligned_cols=389 Identities=12% Similarity=0.045 Sum_probs=245.6
Q ss_pred HHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccC-CChhHHHHHHHHHHHHhhccHHHHHHHH
Q 000145 220 IIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN-NDISVRASAADALEALSSKSIKAKKAVV 298 (2054)
Q Consensus 220 ~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~-~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~ 298 (2054)
.++.-+.+++.++|..|-..|.++... ...+....|+.++.+. .+..+|..|...|+++.......+..-.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~--------~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVE--------NLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHH
Confidence 344445567788999998888775521 0245777888888643 3678999999999998764221111000
Q ss_pred hcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcC
Q 000145 299 AADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQK 378 (2054)
Q Consensus 299 eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~ 378 (2054)
......+ +.+ .
T Consensus 77 -----~~~~~~l---~~~---------~---------------------------------------------------- 87 (462)
T 1ibr_B 77 -----QQRWLAI---DAN---------A---------------------------------------------------- 87 (462)
T ss_dssp -----HHHHHTS---CHH---------H----------------------------------------------------
T ss_pred -----HhhhhcC---CHH---------H----------------------------------------------------
Confidence 0000000 000 0
Q ss_pred CCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccC--CHHHHHHHHHHH
Q 000145 379 SGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA--TADVREYLILSL 456 (2054)
Q Consensus 379 ~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ss--d~evq~~Aa~AL 456 (2054)
...+...|+..+...+.. + ..++.+++.++....-.. .-.+.++.++..+.++ ++.++..++.+|
T Consensus 88 ---------~~~ik~~ll~~l~~~~~~-v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 88 ---------RREVKNYVLQTLGTETYR-P-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp ---------HHHHHHHHHHHTTCCCSS-S-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHhCCCCch-h-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 001122233333333222 4 455566666643221100 1146778899999888 889999999999
Q ss_pred HHhcccC-ccchhhhhccccHHHHHhhhcCC--ChhhhHHHHHHHHHHhhhccchh-hHHHhhCCCchHhhhhhcCCHHH
Q 000145 457 TKLCRRE-VGIWEAIGKREGIQLLISLLGLS--SEQHQEYAVQLIAILTEQVDDSK-WAITAAGGIPPLVQLLEAGSQKA 532 (2054)
Q Consensus 457 ~~Ls~~s-~e~r~~Ive~ggIp~LV~LL~s~--d~~Vr~~Aa~aL~nLs~~s~e~r-~~I~~aGaIp~LV~LL~s~s~~V 532 (2054)
..++... ++..... -...++.+.+++++. +..+|..|+.+++++.....++. ......-.++.+.+++.++++++
T Consensus 155 ~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v 233 (462)
T 1ibr_B 155 GYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV 233 (462)
T ss_dssp HHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHH
Confidence 9988642 1111111 124567888888887 68899999999998754211110 00011112445556677789999
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh-------------------c--
Q 000145 533 REVAAHVLWILCCHSED-IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-------------------D-- 590 (2054)
Q Consensus 533 re~AA~aL~nLa~~sd~-~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~-------------------e-- 590 (2054)
|..++++|..+...... .+..+. .+.++.++..+++.+++++..+...+..++... .
T Consensus 234 r~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 312 (462)
T ss_dssp HHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhH
Confidence 99999999999753322 111110 155666777888899999999999998887652 0
Q ss_pred -------hhhHHHHHHHhcC-------CCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHH
Q 000145 591 -------SATINQLLALLLG-------DSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEY 656 (2054)
Q Consensus 591 -------~~~Ip~Lv~LL~~-------~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~ 656 (2054)
...+|.+++.+.. ++..++..+..+|+.++..... ... ...++.+...+++.++.+|+.
T Consensus 313 ~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~------~~~~~~l~~~l~~~~~~~r~a 385 (462)
T 1ibr_B 313 FYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIV------PHVLPFIKEHIKNPDWRYRDA 385 (462)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THH------HHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHH------HHHHHHHHHHhcCCChHHHHH
Confidence 2345666666653 2346788888899888754331 111 235677778888899999999
Q ss_pred HHHHHHHHhhcCh-hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 657 AASVLADLFSMRQ-DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 657 Aa~ALanLas~~~-e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
|+.+|..++.+.. +.... .-..+++.+++++++.++.+|..|+++|++++.
T Consensus 386 al~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 386 AVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999987432 11111 125789999999999999999999999999986
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.15 E-value=6.3e-09 Score=129.24 Aligned_cols=384 Identities=13% Similarity=0.051 Sum_probs=255.1
Q ss_pred HHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCChhHHH---
Q 000145 478 LLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSEDIRA--- 552 (2054)
Q Consensus 478 ~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd~~r~--- 552 (2054)
.++.-+.+++..+|..|...|.++...+ ..+.+..|..++.++ ++.+|..|+-.|.++.......+.
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHH
Confidence 3444455678889999999998876421 123445677777665 689999999999998643211000
Q ss_pred --HH------HHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----hhhHHHHHHHhcCC--CcchHHHHHHHHH
Q 000145 553 --CV------ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----SATINQLLALLLGD--SPSSKAHVIKVLG 617 (2054)
Q Consensus 553 --~I------~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-----~~~Ip~Lv~LL~~~--~~~V~~~a~~AL~ 617 (2054)
.. .....-..|+..+.+.++.+ ..++.++..++.... .+.++.|++.+.++ ++.++..+..+++
T Consensus 77 ~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~ 155 (462)
T 1ibr_B 77 QQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIG 155 (462)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 00 00112244677788888888 899999999987631 45789999999988 8888999999999
Q ss_pred HHHhhhcchHHHHhhhhcccchHHHHHHhccC--CHHHHHHHHHHHHHHhhcChhhh-hhhhhCCCHHHHHHHhccCCHH
Q 000145 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSS--NEENQEYAASVLADLFSMRQDIC-GSLATDEIVNPCMRLLTSNTQM 694 (2054)
Q Consensus 618 ~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~--s~evre~Aa~ALanLas~~~e~r-~~Iv~~g~V~~Lv~LL~dgs~~ 694 (2054)
.+....... .... .....++.++..+++. +.++|..|+.++.++...-.+.. ......-.++.+.+.+.+.++.
T Consensus 156 ~l~~~~~~~-~~~~--~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (462)
T 1ibr_B 156 YICQDIDPE-QLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 232 (462)
T ss_dssp HHHHHSCGG-GTGG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHhCCch-hhHh--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH
Confidence 887532111 1111 1123577888888887 79999999999999764222111 0111112466667777888999
Q ss_pred HHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHH--------------
Q 000145 695 VATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAE-------------- 760 (2054)
Q Consensus 695 vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~-------------- 760 (2054)
+|..++++|..+....+. ..+.. ...++++.++..+++.+++++..++..+.+++........
T Consensus 233 vr~~~~~~l~~l~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (462)
T 1ibr_B 233 VRVAALQNLVKIMSLYYQ--YMETY-MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 309 (462)
T ss_dssp HHHHHHHHHHHHHHHCGG--GCTTT-TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccc
Confidence 999999999999863222 11111 1115667777788889999999999999888753211000
Q ss_pred ----HH---hcCcHHHHHHHHcC-------CCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCc
Q 000145 761 ----VL---LEDVVSALTRVLAE-------GTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNG 826 (2054)
Q Consensus 761 ----Iv---~~g~I~~LV~LL~s-------~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~ 826 (2054)
+. -...+|.+.+.+.+ ++..+|..|+.+|..++...+ +.+. ...++.+...+.+. +.
T Consensus 310 ~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~~-----~~~~~~l~~~l~~~--~~ 380 (462)
T 1ibr_B 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-----PHVLPFIKEHIKNP--DW 380 (462)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTHH-----HHHHHHHHHHTTCS--SH
T ss_pred hhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHHH-----HHHHHHHHHHhcCC--Ch
Confidence 11 12356666666643 235789999999999998653 2111 34566677777654 34
Q ss_pred hhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccC
Q 000145 827 TDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 827 ~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
..+..|+.+++.++.... ...+. ...+..++.++.++.++++.+|..|..+|.+++...
T Consensus 381 ~~r~aal~~l~~l~~~~~-~~~~~------~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPE-PSQLK------PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHHHHHHHHHHHTSSSSC-TTTTC------TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHhcCCc-HHHHH------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 568999999999984211 01111 123557889999999999999999999999998754
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.98 E-value=5e-06 Score=109.09 Aligned_cols=512 Identities=13% Similarity=0.108 Sum_probs=307.2
Q ss_pred HHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHh
Q 000145 100 AKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQ 179 (2054)
Q Consensus 100 vr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~L 179 (2054)
-+....+++..+..+.+. ..+....++++.+++.+.++.+.-++..++.. +++-. .+ ++..+.+=
T Consensus 55 k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~----~~e~~-~L----~iN~l~kD 119 (621)
T 2vgl_A 55 KKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNS----NSELI-RL----INNAIKND 119 (621)
T ss_dssp HHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC----CHHHH-HH----HHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCHHHHHHHHHHHHHHccC----CcHHH-HH----HHHHHHHh
Confidence 334455555554444332 25678889999999999999999999999862 22211 11 45666666
Q ss_pred hCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhh--ccCCHHHHHHHHHHHHHHHhhcCCCcchhccc
Q 000145 180 LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL--SSDNAAAQSNAASLLARLMLAFGDSIPTVIDS 257 (2054)
Q Consensus 180 L~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL--~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~s 257 (2054)
+.+++ +.++..|+++|+++.. ..+.+ ..++.+.+.+ .+.++.++..|+.++.+++..+++... ..
T Consensus 120 l~~~n---~~ir~lALr~L~~i~~------~e~~~-~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~ 186 (621)
T 2vgl_A 120 LASRN---PTFMGLALHCIANVGS------REMAE-AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MG 186 (621)
T ss_dssp HHSCC---HHHHHHHHHHHHHHCC------HHHHH-HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CC
T ss_pred cCCCC---HHHHHHHHHHhhccCC------HHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---ch
Confidence 66554 6789999999999965 22222 2467788888 788999999999999999976654332 24
Q ss_pred chHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHH
Q 000145 258 GAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANI 337 (2054)
Q Consensus 258 GaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanL 337 (2054)
+.++.+..+|. +.+..++..|..++..+...+++.-. ..++.+++.+. ++
T Consensus 187 ~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~------------------------~l 236 (621)
T 2vgl_A 187 DWTSRVVHLLN-DQHLGVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLS------------------------RI 236 (621)
T ss_dssp SCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHH------------------------HH
T ss_pred hHHHHHHHHhC-CCCccHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHH------------------------HH
Confidence 78899999997 67889999999998888775432110 11122221110 00
Q ss_pred hcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHH
Q 000145 338 YGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMAS 417 (2054)
Q Consensus 338 sGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~ 417 (2054)
+ . .+......+.-.++ . ++..|...++.+..
T Consensus 237 --------------l-----------------------~-~~~~~~~~~~~~~~----------~-~~w~qi~il~ll~~ 267 (621)
T 2vgl_A 237 --------------V-----------------------T-SASTDLQDYTYYFV----------P-APWLSVKLLRLLQC 267 (621)
T ss_dssp --------------H-----------------------H-CCSSSCSTTEETTE----------E-SHHHHHHHHHHGGG
T ss_pred --------------H-----------------------h-CCCCCccchhhcCC----------C-CchHHHHHHHHHHH
Confidence 0 0 00000000000000 0 01122222222222
Q ss_pred hhc--ChhhhHHHhhcchHHHHHHHh---------ccC--CHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc
Q 000145 418 LYG--NIFLSQWVSHAEAKKVLIGLI---------TMA--TADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484 (2054)
Q Consensus 418 L~~--n~~~~~~L~~~g~I~~LI~LL---------~ss--d~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~ 484 (2054)
+.. ++...+.+. +.+..++..+ .+. ...+..+++.++..+... ++. + ..++..|..++.
T Consensus 268 ~~~~~d~~~~~~l~--~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~~---~--~~~~~~L~~~L~ 339 (621)
T 2vgl_A 268 YPPPEDPAVRGRLT--ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PNL---L--VRACNQLGQFLQ 339 (621)
T ss_dssp SSSCSSHHHHHHHH--HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HHH---H--HHHHHHHHHHSS
T ss_pred hCCCCCHHHHHHHH--HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc-HHH---H--HHHHHHHHHHhc
Confidence 221 111111111 1112222111 111 236677777887777532 111 1 246778889998
Q ss_pred CCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh-cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHH
Q 000145 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE-AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAF 563 (2054)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~-s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aL 563 (2054)
++++.+|..++..|..++...+. ...+ ......++..|+ ++|..+|..+...|..++. +.+-+. .+..|
T Consensus 340 ~~~~niry~aL~~l~~l~~~~~~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL 409 (621)
T 2vgl_A 340 HRETNLRYLALESMCTLASSEFS-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEM 409 (621)
T ss_dssp CSCHHHHHHHHHHHHHHTTCTTT-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHH
T ss_pred CCCcchHHHHHHHHHHHHhccCc-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHH
Confidence 88999999999999999875332 1122 234567778888 8899999999999999975 332222 35567
Q ss_pred HHhhccCChhHHHHHHHHHHHHHHhh---chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchH
Q 000145 564 LWLLKSGGPKGQDASAMALTKLIRAA---DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLR 640 (2054)
Q Consensus 564 V~LLkS~~~evq~~AA~AL~nLs~~~---e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~ 640 (2054)
...+.+.+.+.+..++.+++.++..- ....+..|++++......+...+...+..+....+ +. +. -++.
T Consensus 410 ~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~--~~-~~-----~~~~ 481 (621)
T 2vgl_A 410 LSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRD--DV-QG-----YAAK 481 (621)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGC--SC-HH-----HHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCCh--hH-HH-----HHHH
Confidence 77788889999999999999988642 23467888999886655555555555555543211 11 11 1466
Q ss_pred HHHHHhccC--CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhH
Q 000145 641 SLVQVLNSS--NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2054)
Q Consensus 641 ~LV~LLks~--s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~ 718 (2054)
.|+..+.++ ...+...++|+++..+..-++. ..+.-...+..+.+-+...++.+|..+..++.++....++ .+.
T Consensus 482 ~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~-~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~---~~~ 557 (621)
T 2vgl_A 482 TVFEALQAPACHENLVKVGGYILGEFGNLIAGD-PRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE---VKA 557 (621)
T ss_dssp HHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS-TTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG---GHH
T ss_pred HHHHHHcCccchHHHHHHHHHHhcchHHHhccc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH---HHH
Confidence 777878765 3455567778888876421110 0000002234555555678899999999999999763322 221
Q ss_pred HHHhcCChhhHHhh-hh--cCCHHHHHHHHHHHHHhhCC
Q 000145 719 SYIAEGDVKPLIKL-AK--TSSIDAAETAVAALANLLSD 754 (2054)
Q Consensus 719 ~I~~~gaV~~Lv~L-L~--s~d~~Vre~Al~AL~NLa~~ 754 (2054)
.+..+++. .. +.+.++|..|...+.-+..+
T Consensus 558 ------~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~~~ 590 (621)
T 2vgl_A 558 ------TIQDVLRSDSQLKNADVELQQRAVEYLRLSTVA 590 (621)
T ss_dssp ------HHHHHHSSHHHHSCSSHHHHHHHHHHHHHHHSS
T ss_pred ------HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHccC
Confidence 23333332 33 78999999999888777554
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.3e-07 Score=118.33 Aligned_cols=429 Identities=11% Similarity=0.057 Sum_probs=276.6
Q ss_pred cCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHh--ccCCHHHHHHHHHHHHHhcccCccchhhhhccccH
Q 000145 399 LKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLI--TMATADVREYLILSLTKLCRREVGIWEAIGKREGI 476 (2054)
Q Consensus 399 Lk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL--~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggI 476 (2054)
+.+++ +.++--|+++++++.. ++..+ ...+.+..++ .+.++.+++.|+.++.++....++.. ...+.+
T Consensus 120 l~~~n-~~ir~lALr~L~~i~~-~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~ 189 (621)
T 2vgl_A 120 LASRN-PTFMGLALHCIANVGS-REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWT 189 (621)
T ss_dssp HHSCC-HHHHHHHHHHHHHHCC-HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCH
T ss_pred cCCCC-HHHHHHHHHHhhccCC-HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHH
Confidence 34443 3488889999998854 23222 3456678888 88899999999999999987654432 223678
Q ss_pred HHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhh----cC-------------CHHHHHHHHHH
Q 000145 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLE----AG-------------SQKAREVAAHV 539 (2054)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~----s~-------------s~~Vre~AA~a 539 (2054)
+.+.+++.+.++.++..|+.++..++..+++.- ...++.+++.|+ .+ ++-.|......
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~l 264 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRL 264 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHH
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHH
Confidence 899999999999999999999999988544311 112344444332 21 57788888888
Q ss_pred HHHHhcC-ChhHHHHHHHcCChHHHHHhh---------ccCC--hhHHHHHHHHHHHHHHhhc--hhhHHHHHHHhcCCC
Q 000145 540 LWILCCH-SEDIRACVESAGAVPAFLWLL---------KSGG--PKGQDASAMALTKLIRAAD--SATINQLLALLLGDS 605 (2054)
Q Consensus 540 L~nLa~~-sd~~r~~I~e~GaI~aLV~LL---------kS~~--~evq~~AA~AL~nLs~~~e--~~~Ip~Lv~LL~~~~ 605 (2054)
|..++.. ++..++.+.+ .+..++..+ ++.+ ..+...++.++..+....+ ..++..|..++.+.+
T Consensus 265 l~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~ 342 (621)
T 2vgl_A 265 LQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRE 342 (621)
T ss_dssp GGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSC
T ss_pred HHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCC
Confidence 8887753 2333333221 333333322 1112 3778888888888753322 346788899998888
Q ss_pred cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhc-cCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHH
Q 000145 606 PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPC 684 (2054)
Q Consensus 606 ~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLk-s~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~L 684 (2054)
++++..+..++..+....+..+.++ .....++..++ +++..+|..+...|..++. +.+.. .++..|
T Consensus 343 ~niry~aL~~l~~l~~~~~~~~~~~------~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~-----~Iv~eL 409 (621)
T 2vgl_A 343 TNLRYLALESMCTLASSEFSHEAVK------THIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQ-----QIVAEM 409 (621)
T ss_dssp HHHHHHHHHHHHHHTTCTTTHHHHH------TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHH-----HHHHHH
T ss_pred cchHHHHHHHHHHHHhccCcHHHHH------HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHH-----HHHHHH
Confidence 9999988888888764432222322 24667778888 8899999999999999985 34433 346778
Q ss_pred HHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHh
Q 000145 685 MRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLL 763 (2054)
Q Consensus 685 v~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~ 763 (2054)
...+.+.+...+..+..+++.++...+. ... -.+..|++++......+..+++..+..+.. +|+.|..+
T Consensus 410 ~~yl~~~d~~~~~~~v~~I~~la~k~~~--~~~------~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~-- 479 (621)
T 2vgl_A 410 LSYLETADYSIREEIVLKVAILAEKYAV--DYT------WYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYA-- 479 (621)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCS--STH------HHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHH--
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcCC--cHH------HHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHH--
Confidence 8888888999999999999999853222 222 256778888877555566677777777754 56655543
Q ss_pred cCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 764 EDVVSALTRVLAEG--TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 764 ~g~I~~LV~LL~s~--~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
+..|.+.+.+. ...+-+.++|+++..+..-+... .......+..+...+. .....++..++.++..+..
T Consensus 480 ---~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~~----~~~p~~~l~~l~~~~~--~~~~~v~~~~Lta~~Kl~~ 550 (621)
T 2vgl_A 480 ---AKTVFEALQAPACHENLVKVGGYILGEFGNLIAGDP----RSSPLIQFNLLHSKFH--LCSVPTRALLLSTYIKFVN 550 (621)
T ss_dssp ---HHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSST----TSCHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCccchHHHHHHHHHHhcchHHHhcccC----CCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHHHH
Confidence 45677777665 34566778899998875321100 0000112233443332 3455678888888887763
Q ss_pred cccCCCccCCcccccccCCCchHHHHHhhh--cCChhHHHHHHHHHHHh
Q 000145 842 TKQGLNFTYPPWAALAEVPSSIEPLVCCLA--EGPPPLQDKAIEILSRL 888 (2054)
Q Consensus 842 ~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~--~~~~~vq~~Ai~iL~~L 888 (2054)
..+ .. .+.....|..+.. +.++++|++|.+.+.=+
T Consensus 551 ~~p---~~---------~~~i~~~l~~~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 551 LFP---EV---------KATIQDVLRSDSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HCG---GG---------HHHHHHHHSSHHHHSCSSHHHHHHHHHHHHHH
T ss_pred HCh---HH---------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 211 00 1112233334444 78899999999876543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-05 Score=103.87 Aligned_cols=325 Identities=15% Similarity=0.089 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhc---cCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhh
Q 000145 407 VQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT---MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLL 483 (2054)
Q Consensus 407 Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~---ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL 483 (2054)
.+-.++-+||-+..+.. .+++..|-..+. ++++.++..|+.+|+.+..+... ..+..|...+
T Consensus 374 ~k~sA~aSLGlIh~g~~-------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L 438 (963)
T 4ady_A 374 AKFTATASLGVIHKGNL-------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNII 438 (963)
T ss_dssp HHHHHHHHHHHHTSSCT-------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHH
T ss_pred HHHHHHHHhhhhccCch-------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHH
Confidence 56777778887743211 135566666665 56788899999999988776321 2466777777
Q ss_pred cCCC--------hhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHH--hcCChhHHHH
Q 000145 484 GLSS--------EQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL--CCHSEDIRAC 553 (2054)
Q Consensus 484 ~s~d--------~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nL--a~~sd~~r~~ 553 (2054)
.+++ +.++..|+.+|+....++.+ ...+..|..+|.+.+..+++.|+.+|+.+ +..+.
T Consensus 439 ~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~----- 506 (963)
T 4ady_A 439 VENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP----- 506 (963)
T ss_dssp HHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-----
T ss_pred cCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-----
Confidence 6555 56888888888886543221 12456688888888887888888888866 33222
Q ss_pred HHHcCChHHHHHhh-ccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000145 554 VESAGAVPAFLWLL-KSGGPKGQDASAMALTKLIRAADSATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2054)
Q Consensus 554 I~e~GaI~aLV~LL-kS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~ 631 (2054)
.++..|+..+ .+.+..+++.++.+|+.+... +.+.++.+++.|. +.++.++..+..+++.-.....+
T Consensus 507 ----~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g-~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn------ 575 (963)
T 4ady_A 507 ----EAIHDMFTYSQETQHGNITRGLAVGLALINYG-RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGN------ 575 (963)
T ss_dssp ----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC------
T ss_pred ----HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC------
Confidence 2455566543 456778999999999988654 3456777777776 56677777766666643322222
Q ss_pred hhhcccchHHHHHHhc-cCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHH-hccCCHHHHHHHHHHHHHhhCC
Q 000145 632 GSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRL-LTSNTQMVATQSARALGALSRP 709 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLk-s~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~L-L~dgs~~vr~~AA~AL~nLs~s 709 (2054)
..+++.|++.+. +.++.+|..|+.+|+.+..+++ ..++.++.+ ++++++.+|..|+.||+.++.+
T Consensus 576 ----~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 576 ----NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAG 642 (963)
T ss_dssp ----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred ----HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence 235776777654 4588999999999999876443 456777764 4678999999999999999875
Q ss_pred CCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHH-HHHHHhcCcHHHHHHHHcC--CCHHHHHHH
Q 000145 710 TKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDI-AAEVLLEDVVSALTRVLAE--GTSEGKKNA 785 (2054)
Q Consensus 710 ~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~-r~~Iv~~g~I~~LV~LL~s--~~~evr~~A 785 (2054)
++. ..++..|..++++.+..|+..|+.+|+.+.. ..+. ..++ .+.+..|..+..+ .++..+-.+
T Consensus 643 n~~----------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga 710 (963)
T 4ady_A 643 KGL----------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGA 710 (963)
T ss_dssp SCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred CCc----------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHH
Confidence 542 2267789999999999999999999999964 2221 0011 1133346666654 467777777
Q ss_pred HHHHHHhhh
Q 000145 786 SRALHQLLK 794 (2054)
Q Consensus 786 a~AL~nL~~ 794 (2054)
.-+.+-+..
T Consensus 711 ~iAqGll~a 719 (963)
T 4ady_A 711 CVAQGIMNA 719 (963)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 777766543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.55 E-value=2.4e-05 Score=104.83 Aligned_cols=337 Identities=12% Similarity=0.072 Sum_probs=226.7
Q ss_pred HhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhc---CCChhhhHHHHHHHHHHhhhccchhhHHHhhC
Q 000145 440 LITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG---LSSEQHQEYAVQLIAILTEQVDDSKWAITAAG 516 (2054)
Q Consensus 440 LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~---s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aG 516 (2054)
.+....+..+..|+.+|+-+-..+. .+|+..|...+. ++++.++..|+.+|+.+...... .
T Consensus 366 Wl~k~~~~~k~sA~aSLGlIh~g~~--------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~ 429 (963)
T 4ady_A 366 WLGKAQNWAKFTATASLGVIHKGNL--------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------D 429 (963)
T ss_dssp HHHHCCTHHHHHHHHHHHHHTSSCT--------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------H
T ss_pred hhhccchHHHHHHHHHhhhhccCch--------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------H
Confidence 4444455667778888887766532 256777888776 56778899999999998764221 1
Q ss_pred CCchHhhhhhcCC--------HHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHh
Q 000145 517 GIPPLVQLLEAGS--------QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRA 588 (2054)
Q Consensus 517 aIp~LV~LL~s~s--------~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~ 588 (2054)
++..|...|.+.+ +.++..|+-+|+.....+. +..+++.|..++.+.+..+++.++.+|+.+...
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 3456666776555 6788888888888643221 122466778888888877888899998877433
Q ss_pred -hchhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc-CCHHHHHHHHHHHHHHh
Q 000145 589 -ADSATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-SNEENQEYAASVLADLF 665 (2054)
Q Consensus 589 -~e~~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks-~s~evre~Aa~ALanLa 665 (2054)
.+..++..|+..+. +.++.+++.+..+|+.+. +.....++.++..+.. .++.+|..++.++.--.
T Consensus 503 Tgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~------------~g~~e~~~~li~~L~~~~dp~vRygaa~alglAy 570 (963)
T 4ady_A 503 TGKPEAIHDMFTYSQETQHGNITRGLAVGLALIN------------YGRQELADDLITKMLASDESLLRYGGAFTIALAY 570 (963)
T ss_dssp CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT------------TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhh------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 34467777777654 556677888888888663 2334468888888765 58888888877765433
Q ss_pred hcChhhhhhhhhCCCHHHHHHHh-ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhh-hhcCCHHHHHH
Q 000145 666 SMRQDICGSLATDEIVNPCMRLL-TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKL-AKTSSIDAAET 743 (2054)
Q Consensus 666 s~~~e~r~~Iv~~g~V~~Lv~LL-~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~L-L~s~d~~Vre~ 743 (2054)
.+ ..+ ..+|+.|++.+ .+.++.+|..|+.+|+.+..+.++ .++.++.+ +++.++.+|..
T Consensus 571 aG-TGn------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e------------~v~rlv~~L~~~~d~~VR~g 631 (963)
T 4ady_A 571 AG-TGN------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT------------TVPRIVQLLSKSHNAHVRCG 631 (963)
T ss_dssp TT-SCC------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS------------SHHHHTTTGGGCSCHHHHHH
T ss_pred cC-CCC------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH------------HHHHHHHHHHhcCCHHHHHH
Confidence 21 111 23456566555 456788999999999998764332 56667764 46689999999
Q ss_pred HHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCC
Q 000145 744 AVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMD 823 (2054)
Q Consensus 744 Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~ 823 (2054)
|..+|+.++.... ...++..|.++..+.++.+|+.|+.+|+.++..+.. .....+ ......|.....+.+
T Consensus 632 AalALGli~aGn~------~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn--a~~~rv--a~~l~~L~~~~~dk~ 701 (963)
T 4ady_A 632 TAFALGIACAGKG------LQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE--KLNPQV--ADINKNFLSVITNKH 701 (963)
T ss_dssp HHHHHHHHTSSSC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT--TTCTTH--HHHHHHHHHHHHCSS
T ss_pred HHHHHHHhccCCC------cHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc--ccchHH--HHHHHHHHHHHhccc
Confidence 9999999964222 123667788899999999999999999999875421 100000 123334555554434
Q ss_pred CCchhHHHHHHHHHHHh
Q 000145 824 MNGTDVADALEVVALLA 840 (2054)
Q Consensus 824 ~~~~~~~~AL~ALa~La 840 (2054)
.+...+.-+.-+.|.+-
T Consensus 702 ~d~~~~fga~iAqGll~ 718 (963)
T 4ady_A 702 QEGLAKFGACVAQGIMN 718 (963)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 45556777878888775
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-06 Score=116.11 Aligned_cols=194 Identities=13% Similarity=0.060 Sum_probs=147.1
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHH-HHhccCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCM-RLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv-~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
.+.++++.|++++++.|..|+++|.+|+. ++..+..+...+++.+++ ++|.+.+..+|..|+++|+||+.... .+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g--~d~ 111 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE--ADF 111 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC--HHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC--chH
Confidence 46778888999999999999999999998 899999999999998765 57889999999999999999987322 267
Q ss_pred hHHHHhcCChhhHHhhhhcCC---------------------HHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHH
Q 000145 717 KMSYIAEGDVKPLIKLAKTSS---------------------IDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVL 774 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~s~d---------------------~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL 774 (2054)
+..++..|++++|..+++... .++.+.++.+|.+|+. +.+....+...++++.|+..+
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 778999999999999886421 1244567888888885 566667788889999999877
Q ss_pred cCC---CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhh---HHHHHHhhccCCCCchhHHHHHHHHHHHh
Q 000145 775 AEG---TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFV---VLTLVDSLNAMDMNGTDVADALEVVALLA 840 (2054)
Q Consensus 775 ~s~---~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~---v~~LV~LL~sg~~~~~~~~~AL~ALa~La 840 (2054)
.+. ..+++..|..+|..++.++ ..+...+...+. ...+..+.. .... .+..+...|.++.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn---~~~~~~i~~~~~~~~~~~ll~~~~-~~~~--~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDN---LKVGQAITDDQETHVYDVLLKLAT-GTDP--RAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTC---HHHHHHHHTCCSSCHHHHHHHHHH-SSCT--THHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccC---HHHHHHHHhcchHHHHHHHHHHhc-CCcH--HHHHHHHHHHhHh
Confidence 443 4689999999999999876 444444444322 233333333 3332 3666777777764
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.33 E-value=4.7e-07 Score=120.14 Aligned_cols=199 Identities=15% Similarity=0.065 Sum_probs=153.1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHH-HhhccCCHHHHHHHHHHHHHHhcCCCCCChhH
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLL-SLLKSESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV-~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~ 163 (2054)
.+.++++.|++++++.|..||.+|.+|+.++..+..+...|+|..++ .+|.+++.++|.+|+++|.||+..+ .+..
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~---g~d~ 111 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEE---EADF 111 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHS---CHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc---CchH
Confidence 46667788999999999999999999999999999999999998765 5788899999999999999999742 3566
Q ss_pred HHHHHHcCcHHHHHHhhCCCC-----------CCC-------hhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhh
Q 000145 164 MKIFVTEGVVPTLWDQLNPKN-----------KQD-------NVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL 225 (2054)
Q Consensus 164 re~Iv~aG~Vp~Lv~LL~s~s-----------~~d-------~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL 225 (2054)
+..+++.|+++.|..++.... +.. ..+.++++.+|++||.+.+.....+...++++.++..|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 788999999999999885310 000 12456788999999988776667788889999999998
Q ss_pred ccC---CHHHHHHHHHHHHHHHhhcCCCcchhcccchH---HHHHHHhccCCChhHHHHHHHHHHHHhh
Q 000145 226 SSD---NAAAQSNAASLLARLMLAFGDSIPTVIDSGAV---KALVQLVGQNNDISVRASAADALEALSS 288 (2054)
Q Consensus 226 ~s~---s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL---~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~ 288 (2054)
.+. ..+++..++.+|+.++..+++....+.+.+.. ..++.+.. . +...+..+++.|.|+..
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHHHHHHHHhHhh
Confidence 543 36799999999999997766655666555533 23333323 2 33456778888888754
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.1e-05 Score=84.77 Aligned_cols=216 Identities=14% Similarity=0.126 Sum_probs=162.8
Q ss_pred cCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc--------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhc-chH
Q 000145 557 AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD--------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL-QED 627 (2054)
Q Consensus 557 ~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e--------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~-~~d 627 (2054)
.+.+..|..++.+.++.++.++..+|.++....+ .+.++.+++++++.++.+...+.+|++.+....+ +++
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4577888999999999999999999999987621 4577899999999999999999999999986433 333
Q ss_pred HHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 000145 628 LVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2054)
Q Consensus 628 ~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs 707 (2054)
.+.+ .+.+|..+++++++-.++.++..+..+--.+ ...+++..+..++.+.+.++|..+.++|.+++
T Consensus 112 ~y~K------l~~aL~dlik~~~~il~~eaae~Lgklkv~~-------~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 112 TFLK------AAKTLVSLLESPDDMMRIETIDVLSKLQPLE-------DSKLVRTYINELVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp HHHH------HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC-------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred HHHH------HHHHHHHHhcCCCchHHHHHHHHhCcCCccc-------chHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence 3333 4889999999999999999999999982211 12356788899999999999999999999998
Q ss_pred CCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHH-HH-cCCCHHHHHHH
Q 000145 708 RPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTR-VL-AEGTSEGKKNA 785 (2054)
Q Consensus 708 ~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~-LL-~s~~~evr~~A 785 (2054)
..... ++. -.++++-+-.+|++.|+.+++.|+.+|-.+.+.|-....+-+--.+-..++ +. ..|.|.++.+|
T Consensus 179 ~~S~D-~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 179 NSSAD-SGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp GGCSS-CCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred cccCC-HHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 72111 111 234777889999999999999999999999886543211212223333443 33 57889898888
Q ss_pred HHHHHH
Q 000145 786 SRALHQ 791 (2054)
Q Consensus 786 a~AL~n 791 (2054)
-.+...
T Consensus 253 ~~v~~~ 258 (265)
T 3b2a_A 253 KKVSDL 258 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.94 E-value=1e-06 Score=92.12 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=95.3
Q ss_pred ccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccc
Q 000145 636 NKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT 715 (2054)
Q Consensus 636 ~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~ 715 (2054)
...++.++.+++++++.+|..|+++|.++.. ..++.|+++|++.++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---- 72 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence 3468889999999999999999988887643 136999999999999999999999999853 1
Q ss_pred hhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 716 ~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
+.++.|+.+|++.++.||..|+++|+++. ..++++.|..++.+.++.+|..|+++|.++
T Consensus 73 --------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 --------RAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp --------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 26889999999999999999999999885 235788999999999999999999998753
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.9e-06 Score=90.00 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=93.2
Q ss_pred cccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHH
Q 000145 473 REGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRA 552 (2054)
Q Consensus 473 ~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~ 552 (2054)
...++.++.+++++++.+|..|+++|.++.. ..++.|+++|+++++.+|..|+++|+++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3567889999999999999999998876643 135889999999999999999999999863
Q ss_pred HHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHH
Q 000145 553 CVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLG 617 (2054)
Q Consensus 553 ~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~ 617 (2054)
..+++.|+.+++++++.+|..++++|+++. +.+.++.|.++++++++.++..+..+|+
T Consensus 72 ----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~~~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---GERVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp ----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC---cHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 235889999999999999999999999985 4468999999999988888888777765
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.044 Score=75.39 Aligned_cols=538 Identities=11% Similarity=0.069 Sum_probs=260.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhh-----------cHHHHHHHhhhcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 000145 43 KFLEQLHANMSSPQERELITMRILTIAKA-----------KKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVL 111 (2054)
Q Consensus 43 qlIe~L~~ssss~~ere~AL~~L~~La~~-----------~d~ar~~I~~~aGgVp~LV~LLks~s~evr~~AA~vL~~L 111 (2054)
.++..+...+.+...|..|.-.|.+.... +++.|..|.+ .++..+.+++..+|...+.++..+
T Consensus 39 ~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~------~ll~~l~~~~~~ir~~l~~~ia~i 112 (960)
T 1wa5_C 39 TLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK------EIVPLMISLPNNLQVQIGEAISSI 112 (960)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH------HHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH------HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34455555555677899999999988643 3345555533 355555556688999999999888
Q ss_pred ccCchhHHHHHh-cCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCC--CChhHHHHH--HHcCcHHHHHHh-------
Q 000145 112 CKDEDLRLKVLL-GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLS--DDHVGMKIF--VTEGVVPTLWDQ------- 179 (2054)
Q Consensus 112 s~~ee~r~~v~~-~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~n--k~~~~re~I--v~aG~Vp~Lv~L------- 179 (2054)
+..+-. .. -+.++.|++.+.++++..+..++.+|..++..-.. ++...+..+ +-....+.++++
T Consensus 113 a~~d~p----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~ 188 (960)
T 1wa5_C 113 ADSDFP----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQ 188 (960)
T ss_dssp HHHHST----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCc----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643211 01 26789999999888888899999999999863110 111122111 111234444443
Q ss_pred hCCCCCCCh------hHHHHHHHHHHHHhcCCCchhHHHHh--hCChHHHHhhhccC------C---------HHHHHHH
Q 000145 180 LNPKNKQDN------VVQGFVTGALRNLCGDKDGYWRATLE--AGGVDIIVGLLSSD------N---------AAAQSNA 236 (2054)
Q Consensus 180 L~s~s~~d~------~V~e~Al~aL~nL~~~~e~r~~aI~e--aGGI~~LV~LL~s~------s---------~evq~~A 236 (2054)
+........ .+...++++++++....-.. .+.+ ..-++.+...+... + ..++..+
T Consensus 189 l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~ 266 (960)
T 1wa5_C 189 ITANENNKASLNILFDVLLVLIKLYYDFNCQDIPE--FFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSI 266 (960)
T ss_dssp TTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCH--HHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchH--HHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHH
Confidence 333221111 22234667777665432211 1111 11123334444321 0 2467788
Q ss_pred HHHHHHHHhhcCCCcchhcccchHHHHHHHhcc----CCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcC
Q 000145 237 ASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQ----NNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVA 312 (2054)
Q Consensus 237 ~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s----~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s 312 (2054)
+.+|..+....++.-... -...+...+..+.. ..+..+...+...+..+... +..++.+...+-++.+++
T Consensus 267 ~~~l~~l~~~~~~~f~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~li~---- 340 (960)
T 1wa5_C 267 QELVQLYTTRYEDVFGPM-INEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNITE---- 340 (960)
T ss_dssp HHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHHHH----
Confidence 888888774332211100 11233344444421 23345555565555555432 111111100011111110
Q ss_pred CchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHH
Q 000145 313 PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIE 392 (2054)
Q Consensus 313 ~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe 392 (2054)
.+....+.++ ....+.+.+ .-+
T Consensus 341 ------------------------------------------------------~~i~~~m~~~---~~d~e~w~~-dp~ 362 (960)
T 1wa5_C 341 ------------------------------------------------------QIILPNVTLR---EEDVELFED-DPI 362 (960)
T ss_dssp ------------------------------------------------------HTHHHHHSCC---GGGTTTTTT-CHH
T ss_pred ------------------------------------------------------HHhHHhcCCC---HHHHHHHhc-CHH
Confidence 0000011110 000111111 011
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhc------cCCHHHHHHHHHHHHHhcccCccc
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLIT------MATADVREYLILSLTKLCRREVGI 466 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~------ssd~evq~~Aa~AL~~Ls~~s~e~ 466 (2054)
.++..-+...+.+..|..+...|..++.... +.+ -...++.+...+. +.+...+..|..+++.++.+....
T Consensus 363 e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v-~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~ 439 (960)
T 1wa5_C 363 EYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNIT 439 (960)
T ss_dssp HHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCB
T ss_pred HHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhH-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccc
Confidence 1211111122223366666666666643321 111 1112233333443 344566777788888887532111
Q ss_pred hhhhh---cc-ccHH----HHHhhhcCC---ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHH
Q 000145 467 WEAIG---KR-EGIQ----LLISLLGLS---SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREV 535 (2054)
Q Consensus 467 r~~Iv---e~-ggIp----~LV~LL~s~---d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~ 535 (2054)
..... .. ...+ .++..++++ ++.+|..++++++.++..-. . .. -...++.+++.|.++++.++..
T Consensus 440 ~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~-~~-l~~~l~~l~~~L~d~~~~V~~~ 515 (960)
T 1wa5_C 440 NAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--K-AQ-LIELMPILATFLQTDEYVVYTY 515 (960)
T ss_dssp TTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--H-HH-HHHHHHHHHHHTTCSCHHHHHH
T ss_pred cCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--H-HH-HHHHHHHHHHHhCCCChhHHHH
Confidence 10000 00 1112 233344555 77899999999999887421 1 11 1235667778888888999999
Q ss_pred HHHHHHHHhcCCh-------h-HHHHHHH--cCChHHHHHhhccCC---hh--HHHHHHHHHHHHHHhhch-------hh
Q 000145 536 AAHVLWILCCHSE-------D-IRACVES--AGAVPAFLWLLKSGG---PK--GQDASAMALTKLIRAADS-------AT 593 (2054)
Q Consensus 536 AA~aL~nLa~~sd-------~-~r~~I~e--~GaI~aLV~LLkS~~---~e--vq~~AA~AL~nLs~~~e~-------~~ 593 (2054)
|+.+|.+++...+ . .+..+.. ...++.|+.++.... +. ....+..++..+...... ..
T Consensus 516 A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l 595 (960)
T 1wa5_C 516 AAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQL 595 (960)
T ss_dssp HHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHH
T ss_pred HHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 9999999976321 1 1121110 223445556666541 11 234566666666544221 23
Q ss_pred HHHHHHHhc-----CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000145 594 INQLLALLL-----GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 594 Ip~Lv~LL~-----~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas 666 (2054)
++.|...+. .+++.......++++.+.... .++.... .....++.+...+.....+..+.+..++..+..
T Consensus 596 ~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~-~~~~~~~--~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~ 670 (960)
T 1wa5_C 596 LAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYT-QRQNLPL--LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE 670 (960)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTS-CGGGHHH--HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-CcchHHH--HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHH
Confidence 344444443 233445566788888876541 1111111 123356777777776666677777777777765
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00011 Score=84.54 Aligned_cols=145 Identities=18% Similarity=0.149 Sum_probs=113.0
Q ss_pred chHHHHHHh-ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccch
Q 000145 638 GLRSLVQVL-NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTN 716 (2054)
Q Consensus 638 aI~~LV~LL-ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~ 716 (2054)
.++.|...+ ++.+..++..|+.++..|+..-... -.-.-..+++.++..+.+.++.+|..|..+|..+....+ .
T Consensus 57 i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~-~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~ 131 (242)
T 2qk2_A 57 LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR-FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----L 131 (242)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----H
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----H
Confidence 466777788 4889999999999999998632111 111224578999999999999999999999999986321 1
Q ss_pred hHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--hHH--HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHh
Q 000145 717 KMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PDI--AAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQL 792 (2054)
Q Consensus 717 r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~--~e~--r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL 792 (2054)
...++.|...+.+.++.++..++..|..+... ++. ...+ ...++.|+.++.+.++++|..|..++..+
T Consensus 132 ------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l 203 (242)
T 2qk2_A 132 ------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTL 203 (242)
T ss_dssp ------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 12677788999999999999999999997542 331 2222 35889999999999999999999999999
Q ss_pred hhc
Q 000145 793 LKH 795 (2054)
Q Consensus 793 ~~~ 795 (2054)
+..
T Consensus 204 ~~~ 206 (242)
T 2qk2_A 204 IKL 206 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0065 Score=66.42 Aligned_cols=212 Identities=16% Similarity=0.214 Sum_probs=154.6
Q ss_pred HcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000145 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2054)
Q Consensus 556 e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~ 631 (2054)
+...+..++.+|.++-..+|.+|...+.+++..-. ...+..|+.+++ ++.-.......+++|.++... ++.++.
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--Pe~v~~ 107 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--PELVKS 107 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC--HHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC--HHHHHh
Confidence 35567888999998888999999999999986532 123344555554 333333356788888887543 333332
Q ss_pred hhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCC
Q 000145 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTK 711 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~ 711 (2054)
.++.+..-.+-+++.+|.+...+|..+...+|+.... ++..+..++.+.+..-|..|..-+..+..
T Consensus 108 ------vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~aLnFi~alGe--- 173 (253)
T 2db0_A 108 ------MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTALNFIEAMGE--- 173 (253)
T ss_dssp ------HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHHHHHHHTCCT---
T ss_pred ------hHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHHHhc---
Confidence 3666666667789999999999999999877776544 45678888998888777777777766653
Q ss_pred cccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 000145 712 TKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALH 790 (2054)
Q Consensus 712 ~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~ 790 (2054)
+....+ .-.++.|+.+|++.+.-||..|+.+|.+++. +|..|..+.+ .+.=+.+.++.++......|+
T Consensus 174 ----n~~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 174 ----NSFKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp ----TTHHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHHHHHHHH
T ss_pred ----cCcccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHH
Confidence 111222 2367889999999999999999999999997 7776655433 455577888999999999999
Q ss_pred Hhhh
Q 000145 791 QLLK 794 (2054)
Q Consensus 791 nL~~ 794 (2054)
+|.-
T Consensus 243 rl~l 246 (253)
T 2db0_A 243 RLLL 246 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00051 Score=78.82 Aligned_cols=179 Identities=14% Similarity=0.133 Sum_probs=135.9
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHh-hc------hhhHHHHHHHhc-CCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 561 PAFLWLLKSGGPKGQDASAMALTKLIRA-AD------SATINQLLALLL-GDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 561 ~aLV~LLkS~~~evq~~AA~AL~nLs~~-~e------~~~Ip~Lv~LL~-~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
+.+.+.+.+.+...|..++..|..+... ++ .+.++.|.+++. +.+..++..++.+++.++..... ++ ..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~-~~-~~- 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK-RF-SN- 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG-GG-HH-
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh-hH-HH-
Confidence 3477788899999999999999999876 21 356788888894 88889999999999999854322 11 11
Q ss_pred hhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCc
Q 000145 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 633 l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
.-...++.|+..+++.+..+|+.+..+|.+++... .. ...++.+...+++.++.+|..++..|..+......
T Consensus 95 -~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 95 -YASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-SL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp -HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-CH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred -HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-CH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 11235889999999999999999999999998632 11 23578888899999999999999999997653211
Q ss_pred ccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
....... . ...++.|..++++.+.++|..|..+++.++
T Consensus 167 ~~~~~~~-l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 167 TALNKKL-L-KLLTTSLVKTLNEPDPTVRDSSAEALGTLI 204 (242)
T ss_dssp GGCCHHH-H-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred CCccHHH-H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 0011111 2 248889999999999999999999999886
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00019 Score=81.28 Aligned_cols=211 Identities=14% Similarity=0.124 Sum_probs=159.3
Q ss_pred ccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHH
Q 000145 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRAC 553 (2054)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~ 553 (2054)
+.+..|..++...|+.++.+++.+|..+-..-++......-...++.+++++++.+..+.-.|.++|..|-.+.+-..+.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 45778899999999999999999999998854343333333457899999999999999999999999997754433333
Q ss_pred HHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh-chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 554 VESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 554 I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~-e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
+ ...+.+|..+.+++++-.+..++..|+.+.-.. ..+++..+..++.+.+.+++..+..++.+++....+++...
T Consensus 113 y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~-- 188 (265)
T 3b2a_A 113 F--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT-- 188 (265)
T ss_dssp H--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG--
T ss_pred H--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH--
Confidence 3 225678889999999999999999999993222 35678889999999999999999999998887655444332
Q ss_pred hhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh--------ccCCHHHHHHH
Q 000145 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL--------TSNTQMVATQS 699 (2054)
Q Consensus 633 l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL--------~dgs~~vr~~A 699 (2054)
+.++-+-.++++.|+.+++.|..++..+.+. +.. +..++.+.+++ ..|.|.++..|
T Consensus 189 ----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~--pi~-----~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka 252 (265)
T 3b2a_A 189 ----LILDEIPSLLQNDNEFIVELALDVLEKALSF--PLL-----ENVKIELLKISRIVDGLVYREGAPIIRLKA 252 (265)
T ss_dssp ----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS--CCC-----SCCHHHHHHHHHHHHHGGGCSSCHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--ccc-----HhHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence 3466677899999999999999999999872 222 44445444433 34666655543
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.077 Score=72.91 Aligned_cols=653 Identities=11% Similarity=0.056 Sum_probs=299.0
Q ss_pred HccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcC
Q 000145 93 LRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEG 171 (2054)
Q Consensus 93 Lks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG 171 (2054)
+.+++++.|..|-..|..+-..++ +...+..+|.. .++.+|..|+.+|.+.....-+.-+...+..++..
T Consensus 16 ~~~~d~~~r~~A~~~L~~~~~~p~---------~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ 86 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDAEASPQ---------AWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQK 86 (971)
T ss_dssp HHTSTTTC----CHHHHHTTTSTH---------HHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCHH---------HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHH
Confidence 445666677777777777654433 33455666654 68999999999999886421000011123334444
Q ss_pred cHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccC------CHHHHHHHHHHHHHHHh
Q 000145 172 VVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSD------NAAAQSNAASLLARLML 245 (2054)
Q Consensus 172 ~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~------s~evq~~A~~aL~nLs~ 245 (2054)
.+..+.+.-. ..+.++.....++..+....-..|.. .++.++..+.++ ++...+.++.+|..++.
T Consensus 87 ll~~l~~~~~----~~~~vr~kl~~~la~i~~~~~p~Wp~-----~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 87 ILESIVRFAG----GPKIVLNRLCISLGAYIVHMLGEWPG-----AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp HHHHHHHHTT----SCHHHHHHHHHHHHHHHHHTTCC-----------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCHHHHHHHHHHHHHHHHHccccccH-----HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 5665555431 13568888888888887764224432 567788877764 46678888899988883
Q ss_pred h----cCCCcch-hcc--cchHHHHH----HHhccCCCh-------hHHHHHHHHHHHHhh--ccHHHHHHHHhcCCHHH
Q 000145 246 A----FGDSIPT-VID--SGAVKALV----QLVGQNNDI-------SVRASAADALEALSS--KSIKAKKAVVAADGVPV 305 (2054)
Q Consensus 246 ~----~~~~r~~-i~~--sGaL~~LL----~LL~s~~d~-------~Vr~~Aa~aL~nLs~--~s~e~Rk~I~eaggL~~ 305 (2054)
. .+..+.. +.+ ...++.++ .++....+. .++..+..++..... ..+.. ....-++.
T Consensus 158 Ei~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~ 233 (971)
T 2x1g_F 158 EAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAV 233 (971)
T ss_dssp HHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHH
Confidence 1 1111111 100 01233333 333211111 456666666655433 11111 11122333
Q ss_pred HHHhhcC----C----chhhhhhhhhhhhhhHHHHHHHHHhcCch-----h----HHHHh----hhhc---CCCCc-hhh
Q 000145 306 LIGAIVA----P----SKECMQGQRGQALQGHATRALANIYGGMP-----A----LVVYL----GELS---QSPRL-AAP 360 (2054)
Q Consensus 306 LIeLL~s----~----s~e~~q~~~~~~lqe~Al~ALanLsGgis-----~----lI~~L----~elL---~s~~~-~~~ 360 (2054)
+.. +.. + +..+.. .....+++.|+.++..+.+... . +++.+ .... ...+. .+.
T Consensus 234 l~~-L~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~ 311 (971)
T 2x1g_F 234 LLE-VVHKCYWPCIHAGDGCMT-ADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNED 311 (971)
T ss_dssp HHH-HHHHHHSSSCC---CCCC-HHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSH
T ss_pred HHh-hhhhhccccccccccccC-cCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchH
Confidence 333 200 0 000000 0011256677777777654211 1 11111 1111 11110 012
Q ss_pred HHHHHHHHHHHHH--Hhhc-C-C--CCCCcccchh---hHHHHHHHHcCC----CChhhHHHHHHHHHHHhhcC------
Q 000145 361 VADIIGALAYALM--VFEQ-K-S--GVDDEPFDAR---QIEDILVMLLKP----HDNKLVQERVLEAMASLYGN------ 421 (2054)
Q Consensus 361 iA~~LgaL~~~~~--~l~~-~-~--~~~~~~~~~~---gIe~~Lv~LLk~----~~~e~Vq~~Aa~AL~~L~~n------ 421 (2054)
.+..+..+..... +... . . ....+ ... .+.+.+..+... ..++.+...++..+..++..
T Consensus 312 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~ 389 (971)
T 2x1g_F 312 IIVHIYMLFVSSVERHSTLLLSGITSADPE--LSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSN 389 (971)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHTCCHH--HHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccc--ccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhccc
Confidence 2222222221110 0000 0 0 00000 011 122333333322 22344777777766665431
Q ss_pred ----hhhhHHHhh--cchHHHHHHHhccCC--------H-------HHHHHHHHHHHHhcccCccchhhhhccccHHHHH
Q 000145 422 ----IFLSQWVSH--AEAKKVLIGLITMAT--------A-------DVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2054)
Q Consensus 422 ----~~~~~~L~~--~g~I~~LI~LL~ssd--------~-------evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV 480 (2054)
......+.. ...++.++..+...+ + +.+..+...|..++..-. ..+.. -..+.+.
T Consensus 390 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~-~~~~~l~ 465 (971)
T 2x1g_F 390 DEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILE-ILAAMLD 465 (971)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHH-HHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHH-HHHHHHH
Confidence 111111111 123344444443211 1 234455556655554311 11100 1122222
Q ss_pred hhhcC-----CChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhh---h--cCCHHHHHHHHHHHHHHhcCChhH
Q 000145 481 SLLGL-----SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL---E--AGSQKAREVAAHVLWILCCHSEDI 550 (2054)
Q Consensus 481 ~LL~s-----~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL---~--s~s~~Vre~AA~aL~nLa~~sd~~ 550 (2054)
+.+.. .+-..++.++.+++.++....+.. ...++.++.++ . +.++.+|..++++++.++..-...
T Consensus 466 ~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~ 540 (971)
T 2x1g_F 466 EAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN 540 (971)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--
T ss_pred HHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC
Confidence 33332 355688899999999987433211 12233333332 2 348999999999999886521111
Q ss_pred HHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchh-------hHHHHHHHhcC--CCcchHHHHHHHHHHHHh
Q 000145 551 RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSA-------TINQLLALLLG--DSPSSKAHVIKVLGHVLT 621 (2054)
Q Consensus 551 r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~-------~Ip~Lv~LL~~--~~~~V~~~a~~AL~~La~ 621 (2054)
.+.+ ...++.|+..+ + +.++..|+.++.+++...... .+..+.+++.. -+.+.+..+.+|++.++.
T Consensus 541 ~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 541 PAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp --CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 1111 22455566666 3 789999999999999764322 33445566665 345678888999998875
Q ss_pred hhcchHHHHhhhhcccchHHHHH----HhccC--CHHHHHHHHHHHHHHhhcChhh---------------hhhhhhCCC
Q 000145 622 MALQEDLVQKGSAANKGLRSLVQ----VLNSS--NEENQEYAASVLADLFSMRQDI---------------CGSLATDEI 680 (2054)
Q Consensus 622 ~~~~~d~~~~~l~~~GaI~~LV~----LLks~--s~evre~Aa~ALanLas~~~e~---------------r~~Iv~~g~ 680 (2054)
..+.. .....+ ...+++++. +++.. +++.+......+..|+..-... .-.-....+
T Consensus 616 ~~~~~-~~~~~~--~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 692 (971)
T 2x1g_F 616 LLRPE-EIPKYL--DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRT 692 (971)
T ss_dssp TSCTT-HHHHHH--HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTT
T ss_pred hCCHH-HHHHHH--HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHH
Confidence 43211 111111 112344443 33332 4444444454554443210000 001122356
Q ss_pred HHHHHHHhcc--CCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhC---
Q 000145 681 VNPCMRLLTS--NTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLS--- 753 (2054)
Q Consensus 681 V~~Lv~LL~d--gs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~--- 753 (2054)
++.+..++.. .++.+.+.+++++++++..... .. ...+++++..+.. ..... ..+++.++.+..
T Consensus 693 ~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~--~~------~p~l~~~~~~l~~~~~~~~~-~~~l~l~~~~i~~~~ 763 (971)
T 2x1g_F 693 MPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRS--SF------QPMLQDLCLFIVASFQTRCC-APTLEISKTAIVMFF 763 (971)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC----------CTHHHHHHHHHHHHCC--CC-HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh--hc------cccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhC
Confidence 6777777653 4678999999999997752111 11 1134445444422 11111 235555555543
Q ss_pred -ChHHHHHHHh--cCcHHHHHHHHcC-------CCHHHHHHHHHHHHHhhhcCC
Q 000145 754 -DPDIAAEVLL--EDVVSALTRVLAE-------GTSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 754 -~~e~r~~Iv~--~g~I~~LV~LL~s-------~~~evr~~Aa~AL~nL~~~~~ 797 (2054)
++.....+.. .........++.. .++++++.....+.++....|
T Consensus 764 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p 817 (971)
T 2x1g_F 764 KDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIP 817 (971)
T ss_dssp C-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSG
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCc
Confidence 2222222211 1122333344433 378899999899999888764
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=97.69 E-value=0.47 Score=64.93 Aligned_cols=330 Identities=16% Similarity=0.135 Sum_probs=173.8
Q ss_pred cCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhh---hcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCh
Q 000145 484 GLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL---EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV 560 (2054)
Q Consensus 484 ~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL---~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI 560 (2054)
...+-..++.++.+++.++....+... ..++.++..+ .++++.+|..++++++.++..-....+.+ ...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~-----~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYS-----DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCC-----SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhh-----HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHH
Confidence 344556788999999999875332111 1122233322 33578899999999998865211112222 5678
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHhhch-------hhHHHHHHHhcCC--CcchHHHHHHHHHHHHhhhcchHHHHh
Q 000145 561 PAFLWLLKSGGPKGQDASAMALTKLIRAADS-------ATINQLLALLLGD--SPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2054)
Q Consensus 561 ~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~-------~~Ip~Lv~LL~~~--~~~V~~~a~~AL~~La~~~~~~d~~~~ 631 (2054)
+.++..+.+ +.++..|+.++.+++..... ..+..+.+++... +.+.+..+.+|++.+....+ .+....
T Consensus 532 ~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~~~~~ 608 (963)
T 2x19_B 532 PLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VEEILK 608 (963)
T ss_dssp HHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HHHHHH
T ss_pred HHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HHHHHH
Confidence 888888754 89999999999999976332 2344455666642 45677888899998875433 222222
Q ss_pred hhhcccchHHHHHHhc----cC-CHHHHHH---HHHHHHHHhhcChh-------------------hh--hhhhhCCCHH
Q 000145 632 GSAANKGLRSLVQVLN----SS-NEENQEY---AASVLADLFSMRQD-------------------IC--GSLATDEIVN 682 (2054)
Q Consensus 632 ~l~~~GaI~~LV~LLk----s~-s~evre~---Aa~ALanLas~~~e-------------------~r--~~Iv~~g~V~ 682 (2054)
. -...++++...++ .. +++.+.. ...+|..+...-.. .. ..-.....++
T Consensus 609 ~--~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 609 N--LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp H--HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 1 1223444444432 22 5555543 33334343321000 00 0011223344
Q ss_pred HHHHHhc--cCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhh----hc-CCHHHHHHHHHHHHHhh---
Q 000145 683 PCMRLLT--SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA----KT-SSIDAAETAVAALANLL--- 752 (2054)
Q Consensus 683 ~Lv~LL~--dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL----~s-~d~~Vre~Al~AL~NLa--- 752 (2054)
.+.+++. .++..+.+.++.++..+.....+ ... ..+++++..+ .. ..+. .+..+..+.
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~--~~~------~~l~~~~~~l~~~~~~~~~~~----~l~l~~~li~~f 754 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLD--DFA------PMVPQLCEMLGRMYSTIPQAS----ALDLTRQLVHIF 754 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSS--TTG------GGHHHHHHHHHHHHHHSCCHH----HHHHHHHHHHHH
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhcc--ccc------ccHHHHHHHHHHHHHcCCccH----HHHHHHHHHHHh
Confidence 4455553 24678888899999887652222 111 1344444433 21 2222 333333332
Q ss_pred -CChHHHHHHHh--cCcHHHHHHHHc---CCCHHHHHHHHHHHHHhhhcCCCchhHhhhhh-hhhhHHHHHHhhccCCCC
Q 000145 753 -SDPDIAAEVLL--EDVVSALTRVLA---EGTSEGKKNASRALHQLLKHFPVGDVLKGNAQ-CRFVVLTLVDSLNAMDMN 825 (2054)
Q Consensus 753 -~~~e~r~~Iv~--~g~I~~LV~LL~---s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~-~~g~v~~LV~LL~sg~~~ 825 (2054)
.++.....+.. ...+.....++. +.++++++.....+..+..+.+. .+...-. -...+..++..+.. .+
T Consensus 755 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~l~~--~~ 830 (963)
T 2x19_B 755 AHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPD--LFLCERLDVKAVFQCAVLALKF--PE 830 (963)
T ss_dssp TTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGG--GGGCTTSCHHHHHHHHHHHTTC--SC
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcH--HHcCCcccHHHHHHHHHHHcCC--CC
Confidence 22211111111 112333333333 24699999999999999987542 1111100 12344455555642 34
Q ss_pred chhHHHHHHHHHHHhh
Q 000145 826 GTDVADALEVVALLAR 841 (2054)
Q Consensus 826 ~~~~~~AL~ALa~La~ 841 (2054)
......++..+..+..
T Consensus 831 ~~~~~~~l~~l~~l~~ 846 (963)
T 2x19_B 831 APTVKASCGFFTELLP 846 (963)
T ss_dssp HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4456777777777764
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.089 Score=72.36 Aligned_cols=225 Identities=11% Similarity=0.079 Sum_probs=125.8
Q ss_pred cCCHHHHHHHHHHHHHHhhcChhhhhhhhhC-----CCHHH----HHHHhccC---CHHHHHHHHHHHHHhhCCCCcccc
Q 000145 648 SSNEENQEYAASVLADLFSMRQDICGSLATD-----EIVNP----CMRLLTSN---TQMVATQSARALGALSRPTKTKTT 715 (2054)
Q Consensus 648 s~s~evre~Aa~ALanLas~~~e~r~~Iv~~-----g~V~~----Lv~LL~dg---s~~vr~~AA~AL~nLs~s~~~~d~ 715 (2054)
+.++..|+.|..++..++..... +...... ...+. ++..+.+. ++.+|..|+++++.++...+. .
T Consensus 416 ~~~w~~reaal~algaia~~~~~-~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~--~ 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNI-TNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--A 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCC-BTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--H
T ss_pred chhHHHHHHHHHHHHHHHHHhcc-ccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH--H
Confidence 45788999999999999752110 1100010 22222 33345665 889999999999999863221 1
Q ss_pred hhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCCh--------HH-HHHHH--hcCcHHHHHHHHcCCC---HH-
Q 000145 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP--------DI-AAEVL--LEDVVSALTRVLAEGT---SE- 780 (2054)
Q Consensus 716 ~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~--------e~-r~~Iv--~~g~I~~LV~LL~s~~---~e- 780 (2054)
.-..+++.++..|.+.+..|+..|+.+|.+++... +. +..+. -+..++.|..++.... +.
T Consensus 493 -----~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~ 567 (960)
T 1wa5_C 493 -----QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKL 567 (960)
T ss_dssp -----HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHH
T ss_pred -----HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcc
Confidence 12236777888888888999999999999987631 11 11221 1235566666776641 11
Q ss_pred -HHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhcc---CCCCchhHHHHHHHHHHHhhcccCCCccCCccccc
Q 000145 781 -GKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNA---MDMNGTDVADALEVVALLARTKQGLNFTYPPWAAL 856 (2054)
Q Consensus 781 -vr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~s---g~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~ 856 (2054)
..+.+..+|..++...+ +.+.... ...++.|+..+.. ..++.......+++++.+.+.... . . ...
T Consensus 568 ~~~e~l~~al~~vv~~~~--~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~-~-~---~~~- 637 (960)
T 1wa5_C 568 AENEFLMRSIFRVLQTSE--DSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQR-Q-N---LPL- 637 (960)
T ss_dssp TSCHHHHHHHHHHHHHHT--TTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCG-G-G---HHH-
T ss_pred cccHHHHHHHHHHHHHHH--HhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCc-c-h---HHH-
Confidence 34567777777765321 1121111 2344555555542 223334455677888777754100 0 0 000
Q ss_pred ccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhcc
Q 000145 857 AEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGD 891 (2054)
Q Consensus 857 ~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~ 891 (2054)
. .+..++.+...+......+...+.+++..+...
T Consensus 638 ~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 638 L-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp H-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 0 112345666666655556677777777776643
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0021 Score=78.45 Aligned_cols=276 Identities=14% Similarity=0.023 Sum_probs=156.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHH
Q 000145 434 KKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAIT 513 (2054)
Q Consensus 434 I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~ 513 (2054)
...++.++.+.+...++-.--+|.+++...++ .| =.+..+.+=++++++-+|-.|+++|+++.. ++.-.
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~--- 138 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQ--- 138 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHH---
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHH---
Confidence 34467789999988888777778777766322 22 246778888889999999999999999976 23222
Q ss_pred hhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhh
Q 000145 514 AAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSAT 593 (2054)
Q Consensus 514 ~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~ 593 (2054)
...+.+.+.|.+.++-+|..|+-+...|....++. + .+.+..+-+++.+.++.++.+|..+|..+...+ ...
T Consensus 139 --~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~---v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~~a 210 (355)
T 3tjz_B 139 --AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDV---V--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-RLA 210 (355)
T ss_dssp --HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHH---H--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-HHH
T ss_pred --HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHH---H--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-hHH
Confidence 13455777888999999999999999998765553 2 367888999999999999999999999997643 235
Q ss_pred HHHHHHHhcCC---CcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChh
Q 000145 594 INQLLALLLGD---SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 594 Ip~Lv~LL~~~---~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e 670 (2054)
+..|+.-+... ++-.+.. -++.+.......+. -.....++.+...+++.++.+...|++++..+......
T Consensus 211 ~~kLv~~l~~~~l~~~~~q~~---llr~l~~~~~~d~~----~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~ 283 (355)
T 3tjz_B 211 VSKMISKFTRHGLKSPFAYCM---MIRVASRQLEDEDG----SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK 283 (355)
T ss_dssp HHHHHHHHHSSCCSCHHHHHH---HHHHHTCC---------------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred HHHHHHHHhcCCCcChHHHHH---HHHHHHHhccccch----hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH
Confidence 55555555543 2222222 23322222222100 01233567777788999999999999999998652221
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000145 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2054)
Q Consensus 671 ~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL 748 (2054)
. ...++..|..++.+.++.+|-.|.+.|..+....|. . +. ..-.-+..++.+++..+..-|...|
T Consensus 284 ~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~--~----v~--~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 284 E-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS--A----VT--ACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp ---------CCCTHHHHHHSSSSSSHHHHHHCC---------------------------------------------
T ss_pred H-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH--H----HH--HHHHHHHHHccCCcHhHHHHHHHHh
Confidence 1 134567778888888899999999888888764443 1 11 1233467778887777766665554
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0025 Score=77.89 Aligned_cols=270 Identities=13% Similarity=0.101 Sum_probs=151.7
Q ss_pred hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhh
Q 000145 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC 672 (2054)
Q Consensus 593 ~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r 672 (2054)
....+++++.+++...+..+.-++..++.. ..+. + =++..+..=++++++-+|-.|.++|+++.. ++..
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~--~~e~----i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~ 137 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCI--AEDV----I---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STML 137 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTT--SSCG----G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC--HHHH----H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHH
Confidence 345577888888888887776666665433 1111 1 147778888889999999999999999975 3332
Q ss_pred hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 673 GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 673 ~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
+ ...+.+.+.+.+.++.+|+.|+-+..+|....++ ++ .+++..+-+++.+.++.|+-.|+.+|..+.
T Consensus 138 ~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe-------~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~ 204 (355)
T 3tjz_B 138 Q-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD-------VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVR 204 (355)
T ss_dssp H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH-------HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH-------HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 2 3456677788899999999999999999863332 22 368899999999999999999999999887
Q ss_pred CChHHHHHHHhcCcHHHHHHHHcCC---CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhH
Q 000145 753 SDPDIAAEVLLEDVVSALTRVLAEG---TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDV 829 (2054)
Q Consensus 753 ~~~e~r~~Iv~~g~I~~LV~LL~s~---~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~ 829 (2054)
.++. ..+..|+.-+.++ ++-.+-.-.+.+..++...+ .. .....++.+...|++. .....
T Consensus 205 ~~d~--------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~--~~-----~~~~~~~~l~~~L~~~--~~aVv 267 (355)
T 3tjz_B 205 KNDR--------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED--GS-----RDSPLFDFIESCLRNK--HEMVV 267 (355)
T ss_dssp TTCH--------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------------CCCCCS--SHHHH
T ss_pred hhch--------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc--hh-----hHHHHHHHHHHHHcCC--ChHHH
Confidence 6332 1345555555443 45555555555545444320 00 0122344555556533 34467
Q ss_pred HHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCc-hh------hhhhhc
Q 000145 830 ADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPA-VL------GDFLMA 902 (2054)
Q Consensus 830 ~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~-~~------~~~~~~ 902 (2054)
.+|..++-.+...... . ......++..++.++++.+|--|+..|..+...+|. ++ .+.+.+
T Consensus 268 yEa~k~I~~l~~~~~~---~---------~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d 335 (355)
T 3tjz_B 268 YEAASAIVNLPGCSAK---E---------LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTD 335 (355)
T ss_dssp HHHHHHHTC-----------------------CCCTHHHHHHSSSSSSHHHHHHCC------------------------
T ss_pred HHHHHHHHhccCCCHH---H---------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccC
Confidence 8888877766531111 0 122345677788889999999999999999888876 33 566678
Q ss_pred ccccHHHHHHHHh
Q 000145 903 RSSSIGALADRIM 915 (2054)
Q Consensus 903 ~~~~i~~La~~il 915 (2054)
.++.|+.+|--.+
T Consensus 336 ~n~sI~t~Aittl 348 (355)
T 3tjz_B 336 ANRSIATLAITTL 348 (355)
T ss_dssp -------------
T ss_pred CcHhHHHHHHHHh
Confidence 8888888776443
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.33 Score=66.64 Aligned_cols=134 Identities=12% Similarity=0.111 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh---c--cCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhc
Q 000145 649 SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL---T--SNTQMVATQSARALGALSRPTKTKTTNKMSYIAE 723 (2054)
Q Consensus 649 ~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL---~--dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~ 723 (2054)
.+...++.+..++..++.+-.+.. ...++.++.++ . +.++.+|..++++++.++..... . .. .. .
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~--~-~~-~l-~ 545 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLME--N-PA-YI-P 545 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CH-H
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhc--C-HH-HH-H
Confidence 578899999999999976432211 13344444433 3 35889999999999999862211 0 01 01 1
Q ss_pred CChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHH--hcCcHHHHHHHHcCC--CHHHHHHHHHHHHHhhhcCC
Q 000145 724 GDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVL--LEDVVSALTRVLAEG--TSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 724 gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv--~~g~I~~LV~LL~s~--~~evr~~Aa~AL~nL~~~~~ 797 (2054)
.+++.|+..++ +.++..|+.++.+++.+ .+..+. -+..+..+..++..+ +.+.+..+..+++.+....+
T Consensus 546 ~vl~~l~~~l~---~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~ 618 (971)
T 2x1g_F 546 PAINLLVRGLN---SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHHHH---SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhC---hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence 24555666663 67899999999999842 222222 234566666777763 67899999999999987543
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0045 Score=72.02 Aligned_cols=184 Identities=9% Similarity=0.081 Sum_probs=132.4
Q ss_pred HHHhhccCChhHHHHHHHHHHH-HHHh-h-------c-hhhHHHHHHHh-cCCCcchHHHHHHHHHHHHhhhc--chH-H
Q 000145 563 FLWLLKSGGPKGQDASAMALTK-LIRA-A-------D-SATINQLLALL-LGDSPSSKAHVIKVLGHVLTMAL--QED-L 628 (2054)
Q Consensus 563 LV~LLkS~~~evq~~AA~AL~n-Ls~~-~-------e-~~~Ip~Lv~LL-~~~~~~V~~~a~~AL~~La~~~~--~~d-~ 628 (2054)
+...+.+.+..-|..+...|.. +... . + .+.+..|.+.+ ++.+..++..++.|++.++.... .-. .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456678888899999999999 7643 1 1 34677788888 68888889999999999985432 111 1
Q ss_pred HHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 629 VQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 629 ~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+. ...++.++..+++....+++.+..++..++....+....-.-...++.|...+++.++.+|..+...|..+..
T Consensus 101 y~-----~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~ 175 (249)
T 2qk1_A 101 YV-----SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMK 175 (249)
T ss_dssp HH-----HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 11 1258889999998899999999999999987322211100012467888889999999999999999999986
Q ss_pred CCCcccchhH-HHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 709 PTKTKTTNKM-SYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 709 s~~~~d~~r~-~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
..+.. .... .......++.|.+++.+.+.+||..|..+|+.+.
T Consensus 176 ~~~~~-~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 176 EEKDG-YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HCCSC-SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCc-chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 22210 0111 1122568999999999999999999999998875
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0054 Score=71.32 Aligned_cols=186 Identities=8% Similarity=0.101 Sum_probs=131.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHH-hcccCccchhhhhc-cccHHHHHhhh-cCCChhhhHHHHHHHHHHhhhccchhhH-H
Q 000145 437 LIGLITMATADVREYLILSLTK-LCRREVGIWEAIGK-REGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDSKWA-I 512 (2054)
Q Consensus 437 LI~LL~ssd~evq~~Aa~AL~~-Ls~~s~e~r~~Ive-~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~-I 512 (2054)
+...+.+.+...+..+...|.. +..+.+.....-.+ ...+..|...+ +..+..++..|+.+|..++.+-...... -
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3455678888999999999998 76443332210111 23466778888 6888899999999999998743201121 2
Q ss_pred HhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc--
Q 000145 513 TAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-- 590 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-- 590 (2054)
.....+|.++..+++..+.+++.+..+|..+....+.....-.=...++.|+..+++.++.+|..+..+|..+.....
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 223367888999999899999999998888865321100000001245677788899999999999999999986532
Q ss_pred ---------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh
Q 000145 591 ---------SATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622 (2054)
Q Consensus 591 ---------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~ 622 (2054)
...+|.+.+++.+.+++++..+..+++.+...
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999988644
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=97.10 E-value=1.1 Score=61.42 Aligned_cols=409 Identities=12% Similarity=0.052 Sum_probs=199.3
Q ss_pred hHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhcc-----CCHHHHHHHHHHHHHhcccCcc------c----hhhh
Q 000145 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM-----ATADVREYLILSLTKLCRREVG------I----WEAI 470 (2054)
Q Consensus 406 ~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~s-----sd~evq~~Aa~AL~~Ls~~s~e------~----r~~I 470 (2054)
.++...+.++..+........| .+.++.++.++.+ .++.....+...|..++..-.+ . +..+
T Consensus 118 ~ir~kl~~~la~i~~~~~p~~W---p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l 194 (963)
T 2x19_B 118 IVLTRLCVALASLALSMMPDAW---PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSL 194 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS---TTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCS
T ss_pred HHHHHHHHHHHHHHHHhCcccc---chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHH
Confidence 4777777778777544221122 3567778887765 2555666777777766532100 0 1111
Q ss_pred hcc--ccHHHHHhhhcCCCh--hhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcC
Q 000145 471 GKR--EGIQLLISLLGLSSE--QHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH 546 (2054)
Q Consensus 471 ve~--ggIp~LV~LL~s~d~--~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~ 546 (2054)
... ..++.+.+++...+. .+...++.++...... .... ......++.+.+.+ .+++.+..|+.++..+...
T Consensus 195 ~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~-~~~~--~~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 195 AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQL-EVPL--QDCEALIQAAFAAL--QDSELFDSSVEAIVNAISQ 269 (963)
T ss_dssp GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTS-SCCG--GGTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcC-CCCc--ccchHHHHHHHHHh--CCchHHHHHHHHHHHHHcc
Confidence 110 122334445544322 3666676666544331 1100 00112233344444 3677889999999988763
Q ss_pred Ch--hHHHHHHH-----cCChHHHHHhhccCChhHHHHHHHHHHHHHHhh---------c----hhhHHHHHHHhcC---
Q 000145 547 SE--DIRACVES-----AGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA---------D----SATINQLLALLLG--- 603 (2054)
Q Consensus 547 sd--~~r~~I~e-----~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~---------e----~~~Ip~Lv~LL~~--- 603 (2054)
.+ .....+.. -+..+.+......++.+.....+..+..+.... . ...++.+++....
T Consensus 270 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~ 349 (963)
T 2x19_B 270 PDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGH 349 (963)
T ss_dssp TTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSC
T ss_pred cccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCC
Confidence 22 11111110 111222222233445555555556665554321 0 1123334444443
Q ss_pred --CCcchHHHHHHHHHHHHhhh-c--ch--HHHHhhhh--cccchHHHHHHhccCCH---------------HHHHHHHH
Q 000145 604 --DSPSSKAHVIKVLGHVLTMA-L--QE--DLVQKGSA--ANKGLRSLVQVLNSSNE---------------ENQEYAAS 659 (2054)
Q Consensus 604 --~~~~V~~~a~~AL~~La~~~-~--~~--d~~~~~l~--~~GaI~~LV~LLks~s~---------------evre~Aa~ 659 (2054)
.++++...+..-...+.... . .. ........ -...++.++.-+..+++ +.|..+..
T Consensus 350 ~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~ 429 (963)
T 2x19_B 350 YPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISD 429 (963)
T ss_dssp TTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHH
Confidence 24444444433333333210 0 00 00010000 00123333333322211 12344444
Q ss_pred HHHHHhhcChhhhhhhhhCCCHHHHHHHh----ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhh--
Q 000145 660 VLADLFSMRQDICGSLATDEIVNPCMRLL----TSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA-- 733 (2054)
Q Consensus 660 ALanLas~~~e~r~~Iv~~g~V~~Lv~LL----~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL-- 733 (2054)
+|..++...++. +-.-..+.+...+ .+.+...++.+..+++.++.+... ... ..++.++..+
T Consensus 430 ~L~~~~~~~~~~----~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~--~~~------~~l~~l~~~l~~ 497 (963)
T 2x19_B 430 TLMYVYEMLGAE----LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDV--NYS------DVVPGLIGLIPR 497 (963)
T ss_dssp HHHHHHHHHTHH----HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCS--SCC------SHHHHHHHHGGG
T ss_pred HHHHHHHHccHH----HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCc--hhh------HHHHHHHHHHHh
Confidence 555554321111 0011122333334 445678899999999999874432 111 1222333322
Q ss_pred -hcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhH
Q 000145 734 -KTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVV 812 (2054)
Q Consensus 734 -~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v 812 (2054)
.++++.++..++++++.++..-...... -...++.|+..+.+ +.++..|+.++.+++.+.+ +.+... ....+
T Consensus 498 l~~~~~~vr~~~~~~l~~~~~~l~~~~~~-l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~--~~~il 570 (963)
T 2x19_B 498 ISISNVQLADTVMFTIGALSEWLADHPVM-INSVLPLVLHALGN--PELSVSSVSTLKKICRECK--YDLPPY--AANIV 570 (963)
T ss_dssp SCCCSHHHHHHHHHHHHHTHHHHHHCHHH-HTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTT--HHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhh--HHHHH
Confidence 3357889999999999887421101122 34678888888854 8899999999999997531 111111 14456
Q ss_pred HHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 813 LTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 813 ~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
..|..++..++.....+..+.++++.+..
T Consensus 571 ~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 571 AVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 66777776544455667788888888874
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.95 Score=62.48 Aligned_cols=225 Identities=12% Similarity=0.092 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC---CHHHHHHHHHHHHHhcc-
Q 000145 38 MSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG---TPLAKVNVAATLSVLCK- 113 (2054)
Q Consensus 38 ~~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~---s~evr~~AA~vL~~Ls~- 113 (2054)
.+.|.+.++.......++..|.+|-..|..+-..+ ++......+|.+. ++.+|.-++.+|.+...
T Consensus 5 ~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp-----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~ 73 (980)
T 3ibv_A 5 AQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS-----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVRE 73 (980)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh-----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHh
Confidence 56788888777777778899999999998775543 4555666677654 68999999999965432
Q ss_pred -Cch----hHHHHHhcCChHHHHHhhc-cCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCC
Q 000145 114 -DED----LRLKVLLGGCIPPLLSLLK-SESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQD 187 (2054)
Q Consensus 114 -~ee----~r~~v~~~GaIp~LV~LL~-sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d 187 (2054)
.++ .+..+. ...+..+.+.-. .+++-++.+.+.+|..+....-+... .+.++.++.++..++ .
T Consensus 74 l~~e~~~~~~~~lr-~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W--------p~~i~~l~~~~~~~~-~- 142 (980)
T 3ibv_A 74 WNNESNLLELQMIR-DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW--------NDFFASLQGVIAASS-Q- 142 (980)
T ss_dssp CCTTTSHHHHHHHH-HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC--------TTHHHHHHHHHHHHC-C-
T ss_pred CChhhhHHHHHHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC--------chHHHHHHHHhcCCC-h-
Confidence 223 333332 222333333111 24667999999999998852100000 136777888776433 1
Q ss_pred hhHHHHHHHHHHHHhcC----C--C-----ch----hHHHHhhC---ChHHHHhhhc----cCCHHHHHHHHHHHHHHHh
Q 000145 188 NVVQGFVTGALRNLCGD----K--D-----GY----WRATLEAG---GVDIIVGLLS----SDNAAAQSNAASLLARLML 245 (2054)
Q Consensus 188 ~~V~e~Al~aL~nL~~~----~--e-----~r----~~aI~eaG---GI~~LV~LL~----s~s~evq~~A~~aL~nLs~ 245 (2054)
.......+++|..++.. . . .| +..+.+.. .++....+|. +.++.+...++.+|.....
T Consensus 143 ~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~ 222 (980)
T 3ibv_A 143 SEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVS 222 (980)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 12344556666633322 0 0 11 11222210 1333333333 3567777788888776652
Q ss_pred hcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhc
Q 000145 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK 289 (2054)
Q Consensus 246 ~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~ 289 (2054)
- -....+.+...++.+...+. +.+++..|.++|..+..+
T Consensus 223 w--i~~~~i~~~~ll~~l~~~L~---~~~~r~~A~ecL~ei~~k 261 (980)
T 3ibv_A 223 W--ININLIVNEPCMNLLYSFLQ---IEELRCAACETMTEIVNK 261 (980)
T ss_dssp T--SCHHHHHCHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHS
T ss_pred h--cCHHhhhcchHHHHHHHHcC---ChHHHHHHHHHHHHHHHc
Confidence 1 11133455678888888876 368999999999998775
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.042 Score=60.23 Aligned_cols=215 Identities=15% Similarity=0.179 Sum_probs=146.9
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhc-cCCHHHHHHHHHHHHHHhhcC
Q 000145 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN-SSNEENQEYAASVLADLFSMR 668 (2054)
Q Consensus 590 e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLk-s~s~evre~Aa~ALanLas~~ 668 (2054)
+.+.+..++.+|.++-..|+.++...+..+.+.-+ +.. ...+..|+.+++ ++.-......++++..++.-+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~--el~------epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~ 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRE--DLY------EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCG--GGH------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhH--HHH------HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC
Confidence 34678889999999888898888877777664322 111 123666677754 445566666778888888766
Q ss_pred hhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHH
Q 000145 669 QDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAAL 748 (2054)
Q Consensus 669 ~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL 748 (2054)
|+.... .+|.+..-.+-|++.+|.+-+.+|..+...+|. - -.++++-+..++.+.+..-+..|+..+
T Consensus 102 Pe~v~~-----vVp~lfanyrigd~kikIn~~yaLeeIaranP~--l------~~~v~rdi~smltskd~~Dkl~aLnFi 168 (253)
T 2db0_A 102 PELVKS-----MIPVLFANYRIGDEKTKINVSYALEEIAKANPM--L------MASIVRDFMSMLSSKNREDKLTALNFI 168 (253)
T ss_dssp HHHHHH-----HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH--H------HHHHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred HHHHHh-----hHHHHHHHHhcCCccceecHHHHHHHHHHhChH--H------HHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 655433 456666667789999999999999999985554 2 234777899999998877677777777
Q ss_pred HHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchh
Q 000145 749 ANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTD 828 (2054)
Q Consensus 749 ~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~ 828 (2054)
..+..+.. +-+ .-.+|.|..+|.+++..+|..|+++|.+++... ..++ ..+..-+.-+++.. ...
T Consensus 169 ~alGen~~---~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n---pklR------kii~~kl~e~~D~S--~lv 233 (253)
T 2db0_A 169 EAMGENSF---KYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLN---DKLR------KVVIKRLEELNDTS--SLV 233 (253)
T ss_dssp HTCCTTTH---HHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC---HHHH------HHHHHHHHHCCCSC--HHH
T ss_pred HHHhccCc---ccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC---HHHH------HHHHHHHHHhcCcH--HHH
Confidence 66654221 111 236889999999999999999999999999865 3333 23333344443332 233
Q ss_pred HHHHHHHHHHHh
Q 000145 829 VADALEVVALLA 840 (2054)
Q Consensus 829 ~~~AL~ALa~La 840 (2054)
..+.-++|+.+.
T Consensus 234 ~~~V~egL~rl~ 245 (253)
T 2db0_A 234 NKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555666554
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.1 Score=65.52 Aligned_cols=348 Identities=12% Similarity=0.075 Sum_probs=193.6
Q ss_pred cCcHHHHHHHHcc-CCHHHHHHHHHHHHHhccCch---hHHHH-HhcCC-hHHHHH-hhccCCHHHHHHHHHHHHHHhcC
Q 000145 83 AQAMPLFISILRS-GTPLAKVNVAATLSVLCKDED---LRLKV-LLGGC-IPPLLS-LLKSESTDTRKAAAEALYEVSSG 155 (2054)
Q Consensus 83 aGgVp~LV~LLks-~s~evr~~AA~vL~~Ls~~ee---~r~~v-~~~Ga-Ip~LV~-LL~sed~eVr~aAa~AL~nLS~~ 155 (2054)
..++..++.+|+. .+.++....+..+..|..++. .+..+ ....- ...+.. .+..+++-....+...+.-++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 5678999999985 578999999998888766543 44444 33222 222333 33345666667777776666643
Q ss_pred CCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCC-hHHHHhhhcc----C--
Q 000145 156 GLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGG-VDIIVGLLSS----D-- 228 (2054)
Q Consensus 156 ~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGG-I~~LV~LL~s----~-- 228 (2054)
+. ++......+++.. -++..|.... ....+.-++++|..|...++-|.......|. ++.++..+.. .
T Consensus 156 ~~-~~~~~l~~l~~~~---~~~~~L~~~~--~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~ 229 (480)
T 1ho8_A 156 GL-HNVKLVEKLLKNN---NLINILQNIE--QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLA 229 (480)
T ss_dssp TT-CCHHHHHHHHHCH---HHHHHHHCTT--CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred CC-ccHhHHHHHhhhH---HHHHHhcccc--CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence 32 2333233333211 2344444321 1223446788999998877666433333332 5555443321 1
Q ss_pred -----------CHHHHHHHHHHHHHHHhhcCCCcchhcccchH--HHHHHHhccCCChhHHHHHHHHHHHHhhccH----
Q 000145 229 -----------NAAAQSNAASLLARLMLAFGDSIPTVIDSGAV--KALVQLVGQNNDISVRASAADALEALSSKSI---- 291 (2054)
Q Consensus 229 -----------s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL--~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~---- 291 (2054)
..+.+-+++.++|-|++..+ ..+.+...+.. +.|+.+++....+.+-+.+..++.|+...++
T Consensus 230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~ 308 (480)
T 1ho8_A 230 TRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHK 308 (480)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred cccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhh
Confidence 23567788999999985432 33344444433 6677777655667888889999999988642
Q ss_pred HHHH-HHHhcCCHHHHHHhhcCCc-hhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHH
Q 000145 292 KAKK-AVVAADGVPVLIGAIVAPS-KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALA 369 (2054)
Q Consensus 292 e~Rk-~I~eaggL~~LIeLL~s~s-~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~ 369 (2054)
.... .+...+++ .+++.+.... .+ .+ + ..-|.. |.+. |..-.
T Consensus 309 ~~~~~~~~~~~~l-~~l~~L~~rk~~D------ed-l----~edl~~-----------L~e~-------------L~~~~ 352 (480)
T 1ho8_A 309 KVIKQLLLLGNAL-PTVQSLSERKYSD------EE-L----RQDISN-----------LKEI-------------LENEY 352 (480)
T ss_dssp HHHHHHHHHHCHH-HHHHHHHSSCCSS------HH-H----HHHHHH-----------HHHH-------------HHHHH
T ss_pred hHHHHHHHHccch-HHHHHHhhCCCCc------HH-H----HHHHHH-----------HHHH-------------HHHHH
Confidence 1112 22223333 3333332211 00 00 0 000000 0000 00000
Q ss_pred HHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhh-----cChhhh----HHHhhc--chHHHHH
Q 000145 370 YALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLY-----GNIFLS----QWVSHA--EAKKVLI 438 (2054)
Q Consensus 370 ~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~-----~n~~~~----~~L~~~--g~I~~LI 438 (2054)
.. -. ..+++...+.. +.|. .++..| ..+.+. ..++.|+
T Consensus 353 ~~-----------lt-----sfDeY~~El~s---------------G~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~ 401 (480)
T 1ho8_A 353 QE-----------LT-----SFDEYVAELDS---------------KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLI 401 (480)
T ss_dssp HT-----------CC-----HHHHHHHHHHH---------------TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHH
T ss_pred Hh-----------cc-----cHHHHHHHHhc---------------CCcccCCCccchhHHHHHHHHHHhcchHHHHHHH
Confidence 00 00 11112211111 1111 111112 223222 3578899
Q ss_pred HHhcc----------CCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhh
Q 000145 439 GLITM----------ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQ 504 (2054)
Q Consensus 439 ~LL~s----------sd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~ 504 (2054)
.++.+ .++.+...|+.-++.+....|..+..+-+.||=..+++++.++|+++|.+|+.++..+..+
T Consensus 402 ~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 402 ELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99974 3577888888999999998787787777778888899999999999999999999888764
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0006 Score=79.23 Aligned_cols=186 Identities=16% Similarity=0.108 Sum_probs=131.7
Q ss_pred HhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCC
Q 000145 480 ISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGA 559 (2054)
Q Consensus 480 V~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~Ga 559 (2054)
..+++++++.+|..++..| ....|..+++++++.+|..++..| .
T Consensus 56 ~~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------- 99 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------- 99 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C---------------
T ss_pred HHHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C---------------
Confidence 3466788888888887742 123577788899999999988642 1
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccch
Q 000145 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2054)
Q Consensus 560 I~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI 639 (2054)
.+.|..+++++++.+|..++..+ . .+.+..++++.++.|+..+...+ ..
T Consensus 100 ~~~L~~ll~D~d~~VR~~aA~~l---~-------~~~L~~L~~D~d~~VR~~aA~~l---------------------~~ 148 (244)
T 1lrv_A 100 REQLSALMFDEDREVRITVADRL---P-------LEQLEQMAADRDYLVRAYVVQRI---------------------PP 148 (244)
T ss_dssp SGGGGGTTTCSCHHHHHHHHHHS---C-------TGGGGGGTTCSSHHHHHHHHHHS---------------------CG
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC---C-------HHHHHHHHcCCCHHHHHHHHHhc---------------------CH
Confidence 24567788999999999988743 1 12466677888888887654311 11
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHH
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMS 719 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~ 719 (2054)
+.+..+++++++.+|..++.. +. .+.+..++++.++.||..++.. +
T Consensus 149 ~~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~---l------------- 194 (244)
T 1lrv_A 149 GRLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASR---L------------- 194 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHH---C-------------
T ss_pred HHHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHh---C-------------
Confidence 234467788899999988874 11 1344567789999999988854 2
Q ss_pred HHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 000145 720 YIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2054)
Q Consensus 720 I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL 789 (2054)
..+.|..++++.+..|+..++..+. .+.|..+ .+.+..||..|+..|
T Consensus 195 -----~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 -----RGDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp -----CGGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred -----CHHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1245888899999999999888753 2455556 888999999887654
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.17 Score=63.56 Aligned_cols=341 Identities=14% Similarity=0.078 Sum_probs=182.3
Q ss_pred chHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCc---cchhhhhccccH-H-HHHhhhcCCChhhhHHHHHHHHHHhhhc
Q 000145 432 EAKKVLIGLITM-ATADVREYLILSLTKLCRREV---GIWEAIGKREGI-Q-LLISLLGLSSEQHQEYAVQLIAILTEQV 505 (2054)
Q Consensus 432 g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~---e~r~~Ive~ggI-p-~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s 505 (2054)
.+++.++.++.. .+.++.++....+..+...++ .....+.+.... . ++...+..++.-....+..++..+....
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 456777787764 457777777777777766644 111121221111 1 2222333333334455555555554322
Q ss_pred cchhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHHHHhcCChhHHHHHHHcC--ChHHHHHhhcc-------------
Q 000145 506 DDSKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACVESAG--AVPAFLWLLKS------------- 569 (2054)
Q Consensus 506 ~e~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa~~sd~~r~~I~e~G--aI~aLV~LLkS------------- 569 (2054)
......+...-..+-++..|.+. +.+.+..++..|..|.. .+.+|..+.+.+ .++.++.+++.
T Consensus 157 ~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~ 235 (480)
T 1ho8_A 157 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 235 (480)
T ss_dssp TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred CccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccc
Confidence 22111110000001244555553 45667778888888876 577888876543 36666554331
Q ss_pred --C--ChhHHHHHHHHHHHHHHhhc-------hh--hHHHHHHHhcC-CCcchHHHHHHHHHHHHhhhc--chHHHHhhh
Q 000145 570 --G--GPKGQDASAMALTKLIRAAD-------SA--TINQLLALLLG-DSPSSKAHVIKVLGHVLTMAL--QEDLVQKGS 633 (2054)
Q Consensus 570 --~--~~evq~~AA~AL~nLs~~~e-------~~--~Ip~Lv~LL~~-~~~~V~~~a~~AL~~La~~~~--~~d~~~~~l 633 (2054)
+ ...+++.+.-+++-++..++ .. .++.|++.++. ..+.+-+-+..++.|+..... ........+
T Consensus 236 ~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~ 315 (480)
T 1ho8_A 236 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL 315 (480)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHH
Confidence 1 24678999999999987743 12 22556666664 344555556666666654321 112222222
Q ss_pred hcccchHHHHHHhcc---CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHH-HHhhCC
Q 000145 634 AANKGLRSLVQVLNS---SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARAL-GALSRP 709 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks---~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL-~nLs~s 709 (2054)
...++++ ++..|+. +|+++.+..-.....|... ++-+.+ .-++..... +.|..+
T Consensus 316 ~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~-----------------~~~lts----fDeY~~El~sG~L~WS 373 (480)
T 1ho8_A 316 LLGNALP-TVQSLSERKYSDEELRQDISNLKEILENE-----------------YQELTS----FDEYVAELDSKLLCWS 373 (480)
T ss_dssp HHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHH-----------------HHTCCH----HHHHHHHHHHTCCCCC
T ss_pred HHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHH-----------------HHhccc----HHHHHHHHhcCCcccC
Confidence 2233333 4444433 2666655433332222210 000110 011111111 222222
Q ss_pred CCccc-----chhHHH--HhcCChhhHHhhhhc----------CCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHH
Q 000145 710 TKTKT-----TNKMSY--IAEGDVKPLIKLAKT----------SSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALT 771 (2054)
Q Consensus 710 ~~~~d-----~~r~~I--~~~gaV~~Lv~LL~s----------~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV 771 (2054)
..+.+ ++-..+ -+...++.|+++|.+ .|+.+..-||.=++.++. +|..|..+.+-|+=..+.
T Consensus 374 P~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM 453 (480)
T 1ho8_A 374 PPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIM 453 (480)
T ss_dssp GGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHH
T ss_pred CCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHH
Confidence 11100 000011 122377889999974 245566678888888886 888888888889988889
Q ss_pred HHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 772 RVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 772 ~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
++|.+.++++|..|..|+..+..+
T Consensus 454 ~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 454 ELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999888764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.14 Score=69.89 Aligned_cols=295 Identities=14% Similarity=0.143 Sum_probs=187.6
Q ss_pred HHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCCh---hHHHHHH
Q 000145 479 LISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSE---DIRACVE 555 (2054)
Q Consensus 479 LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd---~~r~~I~ 555 (2054)
+++-+...+..-+..++..+.++.......+ ....+.+..|.+.+.+.... +.|+.++..|+.... ...-.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~- 93 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI- 93 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH-
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch-
Confidence 4444444445556777777777765321111 11123445555555544233 889999999985332 122222
Q ss_pred HcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc----hhhHHHHHHHhcCC-CcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 556 SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD----SATINQLLALLLGD-SPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 556 e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e----~~~Ip~Lv~LL~~~-~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
-+.++.++....+....++..|..++..+...-. ...+|.|...+... +...+..+..++..|.... ++.+.
T Consensus 94 -~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~ 170 (986)
T 2iw3_A 94 -VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVA 170 (986)
T ss_dssp -HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHH
T ss_pred -HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHH
Confidence 2567888888888888999998888888876633 34667888878644 4567788888888876543 23322
Q ss_pred hhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 000145 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2054)
Q Consensus 631 ~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~ 710 (2054)
.. -...++.+-+.+.+..++++..|..++..+|.. -+++.. ...+|.|++.+.+.+. + -.|+..|+...
T Consensus 171 ~~--~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~-~~n~d~---~~~~~~~~~~~~~p~~-~----~~~~~~l~~~t 239 (986)
T 2iw3_A 171 LR--MPELIPVLSETMWDTKKEVKAAATAAMTKATET-VDNKDI---ERFIPSLIQCIADPTE-V----PETVHLLGATT 239 (986)
T ss_dssp HH--HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG-CCCTTT---GGGHHHHHHHHHCTTH-H----HHHHHHHTTCC
T ss_pred Hh--ccchhcchHhhcccCcHHHHHHHHHHHHHHHhc-CCCcch---hhhHHHHHHHhcChhh-h----HHHHHHhhcCe
Confidence 22 234677788888888999999999999999873 222211 3467999999987643 2 23566666633
Q ss_pred CcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC---ChHHHHHHHhcCcHHHHHHHHcC-CCHHHHHHHH
Q 000145 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS---DPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNAS 786 (2054)
Q Consensus 711 ~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~---~~e~r~~Iv~~g~I~~LV~LL~s-~~~evr~~Aa 786 (2054)
.........+ .=.+|.|..-|+.....++..++-+..||+. +|.....+ -+..+|.+.+.... .+|++|+.|.
T Consensus 240 fv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~ 316 (986)
T 2iw3_A 240 FVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTL 316 (986)
T ss_dssp CCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHH
T ss_pred eEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHH
Confidence 3211111100 1134556666777888999999999999976 55443333 34677777776554 4899999999
Q ss_pred HHHHHhhhc
Q 000145 787 RALHQLLKH 795 (2054)
Q Consensus 787 ~AL~nL~~~ 795 (2054)
+++.-|...
T Consensus 317 ~a~~~l~~~ 325 (986)
T 2iw3_A 317 RALKTLRRV 325 (986)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999888553
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.12 Score=70.50 Aligned_cols=288 Identities=14% Similarity=0.086 Sum_probs=185.2
Q ss_pred HHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc-hhhHHHhhCC
Q 000145 439 GLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD-SKWAITAAGG 517 (2054)
Q Consensus 439 ~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e-~r~~I~~aGa 517 (2054)
.-+..++......++..+..+..++... .....+.+..|...+...... +.|+.++..|+..... ......-.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~ 96 (986)
T 2iw3_A 21 QKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQL 96 (986)
T ss_dssp HHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTT
T ss_pred hhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHH
Confidence 3344444455667777787776542221 122236677788888776554 8899999999864322 1112222245
Q ss_pred CchHhhhhhcCCHHHHHHHHHHHHHHhcC-ChhHHHHHHHcCChHHHHHhhccC-ChhHHHHHHHHHHHHHHhhc-----
Q 000145 518 IPPLVQLLEAGSQKAREVAAHVLWILCCH-SEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAAD----- 590 (2054)
Q Consensus 518 Ip~LV~LL~s~s~~Vre~AA~aL~nLa~~-sd~~r~~I~e~GaI~aLV~LLkS~-~~evq~~AA~AL~nLs~~~e----- 590 (2054)
++.++..+.+....+|..|..++..+... +...- ...+|.|+..+++. ....+..|..++..+.....
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~ 171 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVAL 171 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHH
Confidence 67777777777889999888777777542 22111 33578888888765 46788888899999986631
Q ss_pred --hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcC
Q 000145 591 --SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMR 668 (2054)
Q Consensus 591 --~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~ 668 (2054)
.+.+|.+.+.+.+-.++|+..+..++..++...++.|. ...++.|+..+.+++. +- .++..|+..
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-------~~~~~~~~~~~~~p~~-~~----~~~~~l~~~- 238 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-------ERFIPSLIQCIADPTE-VP----ETVHLLGAT- 238 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-------GGGHHHHHHHHHCTTH-HH----HHHHHHTTC-
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-------hhhHHHHHHHhcChhh-hH----HHHHHhhcC-
Confidence 45788899999999999999999999988877766653 3468999998877643 32 244555442
Q ss_pred hhhhhhhhh---CCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CCHHHHHHH
Q 000145 669 QDICGSLAT---DEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SSIDAAETA 744 (2054)
Q Consensus 669 ~e~r~~Iv~---~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d~~Vre~A 744 (2054)
.....+.. .=.+|-|.+-|++.+..+++.++-.+.|++.-... .....-.-...+|.|-+.... .++++|+.|
T Consensus 239 -tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~--~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~ 315 (986)
T 2iw3_A 239 -TFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED--PQVIAPFLGKLLPGLKSNFATIADPEAREVT 315 (986)
T ss_dssp -CCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC--HHHHHHHHTTTHHHHHHHTTTCCSHHHHHHH
T ss_pred -eeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC--HHHHhhhhhhhhhHHHHHhhccCCHHHHHHH
Confidence 00000000 11356666777888899999999999999982211 222222222344444443333 789999988
Q ss_pred HHHHHHh
Q 000145 745 VAALANL 751 (2054)
Q Consensus 745 l~AL~NL 751 (2054)
..|+..|
T Consensus 316 ~~a~~~l 322 (986)
T 2iw3_A 316 LRALKTL 322 (986)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888877
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=96.42 E-value=4.4 Score=56.21 Aligned_cols=492 Identities=10% Similarity=0.069 Sum_probs=230.6
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhc-----cHHHHHHHHhcC
Q 000145 227 SDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK-----SIKAKKAVVAAD 301 (2054)
Q Consensus 227 s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~-----s~e~Rk~I~eag 301 (2054)
+++.+.+..|-..|..+- .+ .++...+..++.++.+..+|..|+..|++...+ +++.|..+.
T Consensus 27 ~p~~~~r~~Ae~~L~~~~-~~---------p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir--- 93 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQ-DN---------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIR--- 93 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHH-HS---------TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH---
T ss_pred CCChHHHHHHHHHHHHHH-hC---------chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHH---
Confidence 445566777777776654 22 245666777776567889999999999998653 244555554
Q ss_pred CHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHh-----cCchhHHHHhhhhcCCCCc-hhhHHHHHHHHHHHHHHh
Q 000145 302 GVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY-----GGMPALVVYLGELSQSPRL-AAPVADIIGALAYALMVF 375 (2054)
Q Consensus 302 gL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLs-----Ggis~lI~~L~elL~s~~~-~~~iA~~LgaL~~~~~~l 375 (2054)
..|++.+.+.............++.....+++.+. +..+.++..+.+.++.+.. .+..-.++..++-....+
T Consensus 94 --~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~~~ 171 (1049)
T 3m1i_C 94 --NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLKLLSEEVFDF 171 (1049)
T ss_dssp --HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTS
T ss_pred --HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHh
Confidence 23444443311000000000013333333444432 3466677777777652221 122233444444332211
Q ss_pred hcCCCCCC--------cccch--hhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCC
Q 000145 376 EQKSGVDD--------EPFDA--RQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMAT 445 (2054)
Q Consensus 376 ~~~~~~~~--------~~~~~--~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd 445 (2054)
. ..... ..+.. ..+-..+..++.......++..+..++.+....-.. ..+.....++.+...+. .+
T Consensus 172 ~--~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~~l~~~~l-~~ 247 (1049)
T 3m1i_C 172 S--AEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILELLSTKFM-TS 247 (1049)
T ss_dssp C--TTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHHTHHH-HS
T ss_pred c--chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHHHHHHHhC-CC
Confidence 1 00000 01111 011233344444433344777888888765432221 12333455666663222 37
Q ss_pred HHHHHHHHHHHHHhcccCccch-----hhhhc--cccHHHHHh-h----------h---cCCChhhhHHHHHHHHHHhhh
Q 000145 446 ADVREYLILSLTKLCRREVGIW-----EAIGK--REGIQLLIS-L----------L---GLSSEQHQEYAVQLIAILTEQ 504 (2054)
Q Consensus 446 ~evq~~Aa~AL~~Ls~~s~e~r-----~~Ive--~ggIp~LV~-L----------L---~s~d~~Vr~~Aa~aL~nLs~~ 504 (2054)
++.+..++.+|..+.....+.. ..+.. .+.+..+.. + + ...+.+.....+..+..++..
T Consensus 248 ~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~ 327 (1049)
T 3m1i_C 248 PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR 327 (1049)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHH
Confidence 8888899999988876521110 11100 111222211 1 1 111222333344444333321
Q ss_pred c-------cchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhc----CC---hhHHHHHHHcCChHHHHHhhccC
Q 000145 505 V-------DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC----HS---EDIRACVESAGAVPAFLWLLKSG 570 (2054)
Q Consensus 505 s-------~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~----~s---d~~r~~I~e~GaI~aLV~LLkS~ 570 (2054)
. ++.+..+ ...++.++.....++.++...+...+..++. .. ...+..+ ...++.++..+.-+
T Consensus 328 ~~~~~~~~~~~~~~l--~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l--~~Lv~~ll~~m~~~ 403 (1049)
T 3m1i_C 328 NRALLESDESLRELL--LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC--SQLRLVIIENMVRP 403 (1049)
T ss_dssp HHHHHHSCGGGHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH--HHHHHHHHHTCCCC
T ss_pred HHHHHcCChhhHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH--HHHHHHHHHhcCCC
Confidence 0 0011111 1123444444456688888888888777754 11 1112221 11233333332111
Q ss_pred -------------------Ch---hHHHHHHHHHHHHHHhhchhhHHHHHHH----hcC--CCcchHHHHHHHHHHHHhh
Q 000145 571 -------------------GP---KGQDASAMALTKLIRAADSATINQLLAL----LLG--DSPSSKAHVIKVLGHVLTM 622 (2054)
Q Consensus 571 -------------------~~---evq~~AA~AL~nLs~~~e~~~Ip~Lv~L----L~~--~~~~V~~~a~~AL~~La~~ 622 (2054)
+. ..+..+..+|..++......+++.+... +.+ .+...++.+..+++.++..
T Consensus 404 ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~ 483 (1049)
T 3m1i_C 404 EEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT 483 (1049)
T ss_dssp TTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTS
T ss_pred cceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 00 1234566677777654333444444443 332 3445667778888877532
Q ss_pred hcchHHHHhhhhcccchHHHHHHhcc-----CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHH
Q 000145 623 ALQEDLVQKGSAANKGLRSLVQVLNS-----SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVAT 697 (2054)
Q Consensus 623 ~~~~d~~~~~l~~~GaI~~LV~LLks-----~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~ 697 (2054)
...... ... -...++.|..+... +.+.++..+++++...+..-..+.. .=..+++.++..+.+.++.++.
T Consensus 484 ~~~~~e-~~~--l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~--~l~~vl~~ll~~l~~~~~~V~~ 558 (1049)
T 3m1i_C 484 MSEDTE-KRF--VVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN--FLRTVILKLFEFMHETHEGVQD 558 (1049)
T ss_dssp SCHHHH-HHH--HHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH--HHHHHHHHHHHHTTSSCHHHHH
T ss_pred cCchhh-HHH--HHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHhcCCCHHHHH
Confidence 222110 000 01134444443322 2234444577777766542111111 1124567777788888999999
Q ss_pred HHHHHHHHhhCCCCcccchhHHHH--h--------cCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 698 QSARALGALSRPTKTKTTNKMSYI--A--------EGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 698 ~AA~AL~nLs~s~~~~d~~r~~I~--~--------~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
.|+.++.+++. ..+..+. . ...+..+..++..-+.+.......+++.+.
T Consensus 559 ~A~~al~~l~~------~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii 617 (1049)
T 3m1i_C 559 MACDTFIKIVQ------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1049)
T ss_dssp HHHHHHHHHHH------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999986 2222222 0 112333334444444444555666666664
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.072 Score=63.97 Aligned_cols=153 Identities=13% Similarity=0.063 Sum_probs=125.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHH-hccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHH
Q 000145 86 MPLFISILRSGTPLAKVNVAATLSV-LCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGM 164 (2054)
Q Consensus 86 Vp~LV~LLks~s~evr~~AA~vL~~-Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~r 164 (2054)
+..+++-|.+++.+.+..+..-|.. +..|.+....|+..+|+..|++.....+...+..++.+|.+|=. ...|.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-----~v~Gm 194 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-----FVDGM 194 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-----SHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-----ccccc
Confidence 5667777888888889999999987 77889999999999999999999988899999999999999985 34566
Q ss_pred HHHH-HcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCC----------hHHHHhhhc---cCCH
Q 000145 165 KIFV-TEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGG----------VDIIVGLLS---SDNA 230 (2054)
Q Consensus 165 e~Iv-~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGG----------I~~LV~LL~---s~s~ 230 (2054)
..++ ....|..+..++.+ ....|...|+.+|..++...++....+.++-. .+.|+.+|. +.+.
T Consensus 195 ~gvvs~~~fI~~lyslv~s---~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 195 LGVVAHSDTIQWLYTLCAS---LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp HHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred cchhCCHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 6666 44578888888874 34778999999999999998876655544333 788999997 6788
Q ss_pred HHHHHHHHHHHHHHhh
Q 000145 231 AAQSNAASLLARLMLA 246 (2054)
Q Consensus 231 evq~~A~~aL~nLs~~ 246 (2054)
+++.+++.++..+...
T Consensus 272 elq~~amtLIN~lL~~ 287 (339)
T 3dad_A 272 ELLVYTVTLINKTLAA 287 (339)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999988887754
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.11 Score=62.53 Aligned_cols=181 Identities=15% Similarity=0.097 Sum_probs=132.2
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhH
Q 000145 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKM 718 (2054)
Q Consensus 639 I~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~ 718 (2054)
...++.-+.+++.+.+..+..-|..+...+.+...+++..+|+..|++...+++...+..+.+||.+|-. .. ++...
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~--~v-~Gm~g 196 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML--FV-DGMLG 196 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT--SH-HHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh--cc-ccccc
Confidence 3455566667788888888889998665589999999999999999999999999999999999999975 21 12222
Q ss_pred HHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC-hHHHHHHHh-------c---CcHHHHHHHHc---CCCHHHHHH
Q 000145 719 SYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD-PDIAAEVLL-------E---DVVSALTRVLA---EGTSEGKKN 784 (2054)
Q Consensus 719 ~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~-~e~r~~Iv~-------~---g~I~~LV~LL~---s~~~evr~~ 784 (2054)
.+-....|..+..++.+.+..|...|+..|.+++.. +.....+.+ + .-...|+.+|. .++.+++.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 233455788889999998999999999999999763 323222211 1 13778899997 679999999
Q ss_pred HHHHHHHhhhcCCCch---hHhhhhhhhhhHHHHHHhhccC
Q 000145 785 ASRALHQLLKHFPVGD---VLKGNAQCRFVVLTLVDSLNAM 822 (2054)
Q Consensus 785 Aa~AL~nL~~~~~~~e---~i~~~i~~~g~v~~LV~LL~sg 822 (2054)
|...+..+...-|..+ ++.+.+...+.-..+...+...
T Consensus 277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~ 317 (339)
T 3dad_A 277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA 317 (339)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence 9998888888766544 3444444444444455555543
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0025 Score=74.09 Aligned_cols=186 Identities=14% Similarity=0.071 Sum_probs=130.8
Q ss_pred HHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCC
Q 000145 439 GLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGI 518 (2054)
Q Consensus 439 ~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaI 518 (2054)
.++.+.++.++..++..+ ....+..++++++..+|..++..| ..
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L------------------~~ 100 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL------------------PR 100 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS------------------CS
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC------------------CH
Confidence 455778888888887632 123477788999999999888642 12
Q ss_pred chHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHH
Q 000145 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLL 598 (2054)
Q Consensus 519 p~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv 598 (2054)
+.|..+++++++.+|..++..+ . .+.|..+++++++.+|..++.. +. .+.+.
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l---~---------------~~~L~~L~~D~d~~VR~~aA~~---l~-------~~~l~ 152 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL---P---------------LEQLEQMAADRDYLVRAYVVQR---IP-------PGRLF 152 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS---C---------------TGGGGGGTTCSSHHHHHHHHHH---SC-------GGGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---C---------------HHHHHHHHcCCCHHHHHHHHHh---cC-------HHHHH
Confidence 5678888999999999888742 1 1235567889999999998873 21 12355
Q ss_pred HHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000145 599 ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD 678 (2054)
Q Consensus 599 ~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~ 678 (2054)
.++++.++.|+..+...+ ..+.+..+++++++++|..++..+
T Consensus 153 ~l~~D~d~~VR~~aa~~l---------------------~~~ll~~ll~D~d~~VR~aaa~~l----------------- 194 (244)
T 1lrv_A 153 RFMRDEDRQVRKLVAKRL---------------------PEESLGLMTQDPEPEVRRIVASRL----------------- 194 (244)
T ss_dssp GTTTCSCHHHHHHHHHHS---------------------CGGGGGGSTTCSSHHHHHHHHHHC-----------------
T ss_pred HHHcCCCHHHHHHHHHcC---------------------CHHHHHHHHcCCCHHHHHHHHHhC-----------------
Confidence 677888888887654431 123344678888999999888652
Q ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHH
Q 000145 679 EIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA 749 (2054)
Q Consensus 679 g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~ 749 (2054)
..+.|..++.+.+..||..++..+. .+.|..| ++.+..|+..+...|+
T Consensus 195 -~~~~L~~Ll~D~d~~VR~~aa~~l~---------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 -RGDDLLELLHDPDWTVRLAAVEHAS---------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -CGGGGGGGGGCSSHHHHHHHHHHSC---------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -CHHHHHHHHcCCCHHHHHHHHHcCC---------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 1256788889999999998886632 1334455 8889999998876654
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=96.11 E-value=5.2 Score=55.47 Aligned_cols=227 Identities=12% Similarity=0.084 Sum_probs=124.7
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhH
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~ 163 (2054)
.++.++..+.+++++.|..|-..|..+-+.+ ++...+..+|.. .++.+|..|+..|.+.....-+.-+..
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 3555666666666667777878887764333 344555566644 688999999999988765200001122
Q ss_pred HHHHHHcCcHHHHHHhhCCCC--CCChhHHHHHHHHHHHHhcCC-CchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHH
Q 000145 164 MKIFVTEGVVPTLWDQLNPKN--KQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2054)
Q Consensus 164 re~Iv~aG~Vp~Lv~LL~s~s--~~d~~V~e~Al~aL~nL~~~~-e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL 240 (2054)
.+..++...+..+.+....+. ...+.++.+...++..+.... +.+|. ..++.++.++.+ ++......+.+|
T Consensus 88 ~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp-----~~l~dL~~~l~~-~~~~~~~~L~iL 161 (1023)
T 4hat_C 88 HRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSSS-SVNVCENNMIVL 161 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHTTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhch-----HHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 233344445555555332110 012445666677777776543 12232 246667777754 455677778888
Q ss_pred HHHHhhcCC---C-----cc-hh----cc--cchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHH
Q 000145 241 ARLMLAFGD---S-----IP-TV----ID--SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPV 305 (2054)
Q Consensus 241 ~nLs~~~~~---~-----r~-~i----~~--sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~ 305 (2054)
..|...-.+ . +. .+ .. ...+..+..++....+..+...+..++...... -.-..+.+.+-++.
T Consensus 162 ~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W--I~i~~i~~~~ll~~ 239 (1023)
T 4hat_C 162 KLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW--IPYRYIYETNILEL 239 (1023)
T ss_dssp HHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHH
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh--CCHHHhcchhHHHH
Confidence 777732100 0 00 01 00 123333445554444556666677777766552 22334556666777
Q ss_pred HH-HhhcCCchhhhhhhhhhhhhhHHHHHHHHHhc
Q 000145 306 LI-GAIVAPSKECMQGQRGQALQGHATRALANIYG 339 (2054)
Q Consensus 306 LI-eLL~s~s~e~~q~~~~~~lqe~Al~ALanLsG 339 (2054)
++ ..+.++. ++..|+.||..+.+
T Consensus 240 l~~~~L~~~~-----------~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 240 LSTKFMTSPD-----------TRAITLKCLTEVSN 263 (1023)
T ss_dssp HHTHHHHSHH-----------HHHHHHHHHHHHHT
T ss_pred HHHHHcCCHH-----------HHHHHHHHHHHHHc
Confidence 77 6554322 67788888887754
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=96.04 E-value=8.8 Score=53.23 Aligned_cols=502 Identities=11% Similarity=0.078 Sum_probs=236.5
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhc-----cHH
Q 000145 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSK-----SIK 292 (2054)
Q Consensus 218 I~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~-----s~e 292 (2054)
++.++..+-+++.+.+..|-..|..+-. ..++...+..++..+.+..+|-.|+..|++...+ +++
T Consensus 18 Le~av~~ly~p~~~~r~~A~~~L~~~q~----------sp~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 18 LDQVVSTFYQGSGVQQKQAQEILTKFQD----------NPDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHH----------CTTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHc----------CccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 3344444444455567777777765542 2235555566665566789999999999987653 234
Q ss_pred HHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHh-----cCchhHHHHhhhhcCCCCc-hhhHHHHHH
Q 000145 293 AKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY-----GGMPALVVYLGELSQSPRL-AAPVADIIG 366 (2054)
Q Consensus 293 ~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLs-----Ggis~lI~~L~elL~s~~~-~~~iA~~Lg 366 (2054)
.+..+. ...++.+.....++. ..+. ...++.....+++.+. ...+..+..+...++.+.. ..-.-.++.
T Consensus 88 ~~~~Ir-~~Ll~~l~~~~~~~~--~i~~--~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~~~~~~~~~L~iL~ 162 (1023)
T 4hat_C 88 HRIGIR-NFVVGMIISMCQDDE--VFKT--QKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSSSVNVCENNMIVLK 162 (1023)
T ss_dssp HHHHHH-HHHHHHHHHHHHSHH--HHHH--CHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHhcCCcc--cccc--cHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 444443 122222222211110 0000 0012222333333332 3455666666666654322 111223333
Q ss_pred HHHHHHHHhhcCCCCC--Ccccc------hhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHH
Q 000145 367 ALAYALMVFEQKSGVD--DEPFD------ARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLI 438 (2054)
Q Consensus 367 aL~~~~~~l~~~~~~~--~~~~~------~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI 438 (2054)
.+.-....+..+.... +..+. -..+...+..++.......+...+..++......-.. ..+...+.++.++
T Consensus 163 ~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i-~~i~~~~ll~~l~ 241 (1023)
T 4hat_C 163 LLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPY-RYIYETNILELLS 241 (1023)
T ss_dssp HHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT-HHHHSSSHHHHHH
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH-HHhcchhHHHHHH
Confidence 3332221111000000 00000 0122234445554443444666777777776543222 2345567778888
Q ss_pred -HHhccCCHHHHHHHHHHHHHhcccCc--c---chhhhhc--cccHHHH-----------Hhhhc---CCChhhhHHHHH
Q 000145 439 -GLITMATADVREYLILSLTKLCRREV--G---IWEAIGK--REGIQLL-----------ISLLG---LSSEQHQEYAVQ 496 (2054)
Q Consensus 439 -~LL~ssd~evq~~Aa~AL~~Ls~~s~--e---~r~~Ive--~ggIp~L-----------V~LL~---s~d~~Vr~~Aa~ 496 (2054)
.++. +++.+..|+.+|..+..... + ....+.. .+.++.+ ...+. ..+.+....-+.
T Consensus 242 ~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~ 319 (1023)
T 4hat_C 242 TKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAM 319 (1023)
T ss_dssp THHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHH
Confidence 7764 57889999999999876321 1 1111100 0111111 11111 112333334444
Q ss_pred HHHHHhhhccchhhHHHhhCC--------CchHhhhhhcCCHHHHHHHHHHHHHHhcC--Ch-----hHHHHHHHcCChH
Q 000145 497 LIAILTEQVDDSKWAITAAGG--------IPPLVQLLEAGSQKAREVAAHVLWILCCH--SE-----DIRACVESAGAVP 561 (2054)
Q Consensus 497 aL~nLs~~s~e~r~~I~~aGa--------Ip~LV~LL~s~s~~Vre~AA~aL~nLa~~--sd-----~~r~~I~e~GaI~ 561 (2054)
.+..++... ...+..... +..|+.+-..++.++-..+......|..+ .+ ..+..+ ...++
T Consensus 320 l~~~~~e~~---~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~--~~L~~ 394 (1023)
T 4hat_C 320 FLTTYLARN---RALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC--SQLRL 394 (1023)
T ss_dssp HHHHHHHHH---GGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHH--HHHHH
T ss_pred HHHHHHHHH---HHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH--HHHHH
Confidence 444444421 112211101 11222222344777767777666666431 00 111111 12233
Q ss_pred HHHHhhccCC---------------------hhHHHHH-HHHHHHHHHhhchhhHHHHHHHh----cC--CCcchHHHHH
Q 000145 562 AFLWLLKSGG---------------------PKGQDAS-AMALTKLIRAADSATINQLLALL----LG--DSPSSKAHVI 613 (2054)
Q Consensus 562 aLV~LLkS~~---------------------~evq~~A-A~AL~nLs~~~e~~~Ip~Lv~LL----~~--~~~~V~~~a~ 613 (2054)
.|+.-+.-+. ....++. -.+|..++.-.....++.+...+ .+ .+.+..+.++
T Consensus 395 vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~ 474 (1023)
T 4hat_C 395 VIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLS 474 (1023)
T ss_dssp HHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHH
T ss_pred HHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 3333322111 1112211 14455554433334555555544 33 3456778889
Q ss_pred HHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc-----CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh
Q 000145 614 KVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS-----SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL 688 (2054)
Q Consensus 614 ~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks-----~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL 688 (2054)
.|+|.++...... ..... -...++.|+.++.. ....++..+++++...+.--..+. .. =..++..|++.+
T Consensus 475 ~a~gaIa~~~~~~-~e~~~--l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-~~-L~~vl~~L~~~l 549 (1023)
T 4hat_C 475 WAIGSISGTMSED-TEKRF--VVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NF-LRTVILKLFEFM 549 (1023)
T ss_dssp HHHHHTTTSSCHH-HHHHH--HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-HH-HHHHHHHHHHHT
T ss_pred HHHHHHHcCCCch-hHHHH--HHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccH-HH-HHHHHHHHHHHh
Confidence 9999887432221 11111 12357778888764 233456677788877654211110 10 123455566666
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHh------cCChhhH----HhhhhcCCHHHHHHHHHHHHHhhC
Q 000145 689 TSNTQMVATQSARALGALSRPTKTKTTNKMSYIA------EGDVKPL----IKLAKTSSIDAAETAVAALANLLS 753 (2054)
Q Consensus 689 ~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~------~gaV~~L----v~LL~s~d~~Vre~Al~AL~NLa~ 753 (2054)
.+.++.++..|++++.+|+. ..+..+.. ...+..+ ......-+...+..+..+++.+..
T Consensus 550 ~~~~~~v~~~A~~al~~l~~------~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 550 HETHEGVQDMACDTFIKIVQ------KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp TCSCHHHHHHHHHHHHHHHH------HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHH------HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 77789999999999999986 33333322 1123333 333334566777788888888876
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=95.19 E-value=17 Score=50.52 Aligned_cols=220 Identities=11% Similarity=0.064 Sum_probs=116.0
Q ss_pred HHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCC-ChhHHHHHHH
Q 000145 92 ILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSD-DHVGMKIFVT 169 (2054)
Q Consensus 92 LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk-~~~~re~Iv~ 169 (2054)
.+.+++.+.|..|-..|..+-..+ ++...+..+|.. .++.+|..|+..|.+.....-+. +...+ ..++
T Consensus 24 ~~~~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~-~~ir 93 (1049)
T 3m1i_C 24 TFYQGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHR-IGIR 93 (1049)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHH-HHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHH-HHHH
Confidence 334566667777888887764332 455566666654 68999999999999886421000 12222 3333
Q ss_pred cCcHHHHHHhhCCCC--CCChhHHHHHHHHHHHHhcCC-CchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhh
Q 000145 170 EGVVPTLWDQLNPKN--KQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLA 246 (2054)
Q Consensus 170 aG~Vp~Lv~LL~s~s--~~d~~V~e~Al~aL~nL~~~~-e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~ 246 (2054)
...+..+...-..+. ..++.++.....++..+.... +..|. ..++.++..+. .++..++.++.+|..++..
T Consensus 94 ~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp-----~ll~~L~~~~~-~~~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 94 NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-----EFIPELIGSSS-SSVNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccch-----HHHHHHHHHHc-cChHHHHHHHHHHHHHHHH
Confidence 334444443221100 002456777777777776652 23333 24677777775 5566678888888888832
Q ss_pred cCCCc-------------chhcc--cchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhc
Q 000145 247 FGDSI-------------PTVID--SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIV 311 (2054)
Q Consensus 247 ~~~~r-------------~~i~~--sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~ 311 (2054)
-.+.. ..+.. ...+..+..++....+..++..+..++..+...-+ -..+.+...++.+++.+.
T Consensus 168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l 245 (1049)
T 3m1i_C 168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFM 245 (1049)
T ss_dssp HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC
Confidence 11110 00111 01223334444434455677777777766544211 112333444444443222
Q ss_pred CCchhhhhhhhhhhhhhHHHHHHHHHhc
Q 000145 312 APSKECMQGQRGQALQGHATRALANIYG 339 (2054)
Q Consensus 312 s~s~e~~q~~~~~~lqe~Al~ALanLsG 339 (2054)
. + ..++..++.+|..+.+
T Consensus 246 ~-~---------~~~~~~a~~~L~~i~~ 263 (1049)
T 3m1i_C 246 T-S---------PDTRAITLKCLTEVSN 263 (1049)
T ss_dssp H-S---------HHHHHHHHHHHHHHHH
T ss_pred C-C---------HhHHHHHHHHHHHHHh
Confidence 1 1 1256677888777653
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=94.71 E-value=5.1 Score=55.30 Aligned_cols=473 Identities=11% Similarity=0.060 Sum_probs=225.5
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccC---CHHHHHHHHHHHHHhccc-Ccc-
Q 000145 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA---TADVREYLILSLTKLCRR-EVG- 465 (2054)
Q Consensus 391 Ie~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ss---d~evq~~Aa~AL~~Ls~~-s~e- 465 (2054)
++..+...+.+..+...|..|-.-|..+-..++ +......++..+ +..++..++..|.+.... +++
T Consensus 8 v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~ 78 (980)
T 3ibv_A 8 VENAVEAALDPSVGPIIKQQATDFIGSLRSSST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNES 78 (980)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 334443444554344477777766666644443 334455556543 688888888888765441 122
Q ss_pred ---chhhhhccccHHHHHhhhc-CCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCH-HHHHHHHHHH
Q 000145 466 ---IWEAIGKREGIQLLISLLG-LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQ-KAREVAAHVL 540 (2054)
Q Consensus 466 ---~r~~Ive~ggIp~LV~LL~-s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~-~Vre~AA~aL 540 (2054)
.+..+ +...++.+.+.-. .+...++...+.++..+..+.....| .+.++.++.++.+++. .......++|
T Consensus 79 ~~~~~~~l-r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W----p~~i~~l~~~~~~~~~~~~~~~~LriL 153 (980)
T 3ibv_A 79 NLLELQMI-RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW----NDFFASLQGVIAASSQSEFSNFYLKVL 153 (980)
T ss_dssp SHHHHHHH-HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC----TTHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC----chHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 22222 2222333333110 23445788888888888775322111 1345556666665433 2333444455
Q ss_pred HHHhcC--------Ch-------hHHHHHHHcC---ChHHHHHhhc----cCChhHHHHHHHHHHHHHHhh------chh
Q 000145 541 WILCCH--------SE-------DIRACVESAG---AVPAFLWLLK----SGGPKGQDASAMALTKLIRAA------DSA 592 (2054)
Q Consensus 541 ~nLa~~--------sd-------~~r~~I~e~G---aI~aLV~LLk----S~~~evq~~AA~AL~nLs~~~------e~~ 592 (2054)
..+..+ .+ ..++.+.+.. .++....++. +.++.++..+..++.....-. +..
T Consensus 154 ~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ 233 (980)
T 3ibv_A 154 LSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEP 233 (980)
T ss_dssp HHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHH
T ss_pred HHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcch
Confidence 433221 00 1123333221 1223333443 367778878888877765432 245
Q ss_pred hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhc--cCCHHHHHHHHHHHHHHhhcChh
Q 000145 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLN--SSNEENQEYAASVLADLFSMRQD 670 (2054)
Q Consensus 593 ~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLk--s~s~evre~Aa~ALanLas~~~e 670 (2054)
.++.+.+++.+ ++++..+++||..+......++.....+..- .+...+..+. .+|.+..+..++.+..++..-..
T Consensus 234 ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l-~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~ 310 (980)
T 3ibv_A 234 CMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNIL-NLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVA 310 (980)
T ss_dssp HHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH-HHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHH-hHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 66777777765 6788999999998876544333222211110 1111111111 45777776666666555432111
Q ss_pred h-----------hhhhh--hCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC---CcccchhHHHHhcCChhhHHhh--
Q 000145 671 I-----------CGSLA--TDEIVNPCMRLLTSNTQMVATQSARALGALSRPT---KTKTTNKMSYIAEGDVKPLIKL-- 732 (2054)
Q Consensus 671 ~-----------r~~Iv--~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~---~~~d~~r~~I~~~gaV~~Lv~L-- 732 (2054)
. +.... -.+.++.++.++.++++++-..+..-+..+.... +.....+.. -...+..|+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~--~~~~l~~Ll~~li 388 (980)
T 3ibv_A 311 IKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSAS--LKEFLKSLLEAII 388 (980)
T ss_dssp HHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHH--HHHHHHHHHHHHH
T ss_pred HccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHH--HHHHHHHHHHHHH
Confidence 1 11111 1256777778887777776655444443333100 000000000 00122223322
Q ss_pred --hhcC------C------H----HHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHH-HHHc---CCCHHHHHHHHHHH
Q 000145 733 --AKTS------S------I----DAAETAVAALANLLS-DPDIAAEVLLEDVVSALT-RVLA---EGTSEGKKNASRAL 789 (2054)
Q Consensus 733 --L~s~------d------~----~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV-~LL~---s~~~evr~~Aa~AL 789 (2054)
+.-+ + . +.|......+..++. +++..-..... .+..++ +.+. +.+.+..+.+..+|
T Consensus 389 ~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l 467 (980)
T 3ibv_A 389 KKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSYMYS-AITSSLSTAATLSPENSWQLIEFALYET 467 (980)
T ss_dssp HTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 1110 0 0 122222222222211 23221111110 222222 3332 23567899999999
Q ss_pred HHhhhcCCCchhHhhhhhh--hhhHHHHHHhhccC---CCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchH
Q 000145 790 HQLLKHFPVGDVLKGNAQC--RFVVLTLVDSLNAM---DMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIE 864 (2054)
Q Consensus 790 ~nL~~~~~~~e~i~~~i~~--~g~v~~LV~LL~sg---~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~ 864 (2054)
+.++..-............ ...++-+..++.++ ..+...+..+...++..+.- ... .+..++
T Consensus 468 ~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~-----------~~~--~~~~l~ 534 (980)
T 3ibv_A 468 YIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASF-----------FDY--ESAAIP 534 (980)
T ss_dssp HHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGG-----------GGT--CCTTHH
T ss_pred HHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH-----------Hhc--CchhHH
Confidence 9988753321100000000 22344455554422 34556677777777766631 111 223455
Q ss_pred HHHHhh------hcCChhHHHHHHHHHHHhhccCCchh
Q 000145 865 PLVCCL------AEGPPPLQDKAIEILSRLCGDQPAVL 896 (2054)
Q Consensus 865 ~Lv~ll------~~~~~~vq~~Ai~iL~~L~~~~~~~~ 896 (2054)
+++..+ .++++.++.+|..++.++|.+.+..+
T Consensus 535 ~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L 572 (980)
T 3ibv_A 535 ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQV 572 (980)
T ss_dssp HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHh
Confidence 554444 45677899999999999999876433
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.47 E-value=1.3 Score=56.08 Aligned_cols=217 Identities=13% Similarity=0.170 Sum_probs=146.3
Q ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhC--CCHHHHHHHh-cc------CC---HHHHHHHHHHHHH
Q 000145 638 GLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCMRLL-TS------NT---QMVATQSARALGA 705 (2054)
Q Consensus 638 aI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~--g~V~~Lv~LL-~d------gs---~~vr~~AA~AL~n 705 (2054)
..+.|+.-|-++++++|-.|+.+|+.+........+..... +..-.|+-++ -| ++ ..||+.||++|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45667777778899999999999999976432211111111 2222222222 11 11 3799999999999
Q ss_pred hhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHH
Q 000145 706 LSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNA 785 (2054)
Q Consensus 706 Ls~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~A 785 (2054)
+ ...+. . ..++..|+..+.....+++..++-.|-.+ .+.... -.+.++.++..|.+.++++|..|
T Consensus 255 L-~hLp~--e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 255 I-YPLIG--P-------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp H-TTTSC--S-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred H-HhCCh--h-------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhcCCcccHHHHHH
Confidence 9 75554 2 33566666667888899999999999988 111111 35677888888999999999999
Q ss_pred HHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHH
Q 000145 786 SRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEP 865 (2054)
Q Consensus 786 a~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~ 865 (2054)
+.+|.-++. + +.+ ...+..+.+.|.+.++-..-.......|+.|.+.... .. ..+.-++.
T Consensus 320 AetLiPIA~--p--~~l------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~-a~---------~dp~LVPR 379 (800)
T 3oc3_A 320 AELLCHFPI--T--DSL------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE-LS---------IPPERLKD 379 (800)
T ss_dssp HHHHTTSCC--S--STH------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT-CC---------CCSGGGGG
T ss_pred HHHhhhhcc--h--hhH------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc-cc---------cChHHHHH
Confidence 999988772 1 111 3466778888876654444566667777777764321 11 12345777
Q ss_pred HHHhhhcCChhHHHHHHHHHHHhh
Q 000145 866 LVCCLAEGPPPLQDKAIEILSRLC 889 (2054)
Q Consensus 866 Lv~ll~~~~~~vq~~Ai~iL~~L~ 889 (2054)
|--++.+.-+.||...+..|..++
T Consensus 380 L~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 380 IFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp TGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHhhhcCCcHHHHHHHHHHHHHHH
Confidence 778889999999999999998887
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.38 E-value=1.1 Score=52.63 Aligned_cols=175 Identities=9% Similarity=0.100 Sum_probs=108.6
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHHHhhchhhH---HHHHHHh----cCCCcchHHHHHHHHHHHHhhhcchHHHHhh-h
Q 000145 562 AFLWLLKSGGPKGQDASAMALTKLIRAADSATI---NQLLALL----LGDSPSSKAHVIKVLGHVLTMALQEDLVQKG-S 633 (2054)
Q Consensus 562 aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~I---p~Lv~LL----~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~-l 633 (2054)
.+...+.+.+..-+..+...|...........+ +.+.+-+ .+.+..+...+.+.|..+.......+ .+-. .
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~-y~~~~~ 128 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTE-TPMSQE 128 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-CCCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcc-ccchHH
Confidence 344445555555555555555554433222222 2233322 25566666666666666542211100 0000 0
Q ss_pred hcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcc
Q 000145 634 AANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTK 713 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~ 713 (2054)
...-.++.|+.-+.++.+.+|+.+-.++..+....+ -..+.+.++.-+++.|..+|..+...+..+....
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~--- 198 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNA--- 198 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc---
Confidence 012357888888888899999999988877765211 1245677888889999999999999999887511
Q ss_pred cchhHHHHhcCCh---hhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 714 TTNKMSYIAEGDV---KPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 714 d~~r~~I~~~gaV---~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
+.. ....+ +.+.+++.+.|.+||+.|+.++..+.
T Consensus 199 -G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 199 -GIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp -CSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred -CCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 111 13367 89999999999999999999998664
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.06 E-value=2.1 Score=49.87 Aligned_cols=148 Identities=15% Similarity=0.128 Sum_probs=98.8
Q ss_pred hHHHHHHhccCCHHHHHHHHHHHHHHhhcChh-----hhhhhhhCCCHHHHHH-HhccCCHHHHHHHHHHHHHhhCCCCc
Q 000145 639 LRSLVQVLNSSNEENQEYAASVLADLFSMRQD-----ICGSLATDEIVNPCMR-LLTSNTQMVATQSARALGALSRPTKT 712 (2054)
Q Consensus 639 I~~LV~LLks~s~evre~Aa~ALanLas~~~e-----~r~~Iv~~g~V~~Lv~-LL~dgs~~vr~~AA~AL~nLs~s~~~ 712 (2054)
.+.+...+.+.|..+.+.++.++..++..... ......-..+++.|+. .+.+..+.++..|..++..+......
T Consensus 57 ~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~ 136 (278)
T 4ffb_C 57 PTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS 136 (278)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc
Confidence 45566678888999999999999888652111 1111222345666765 47788889999888888777641111
Q ss_pred ccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--hHH-HHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHH
Q 000145 713 KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PDI-AAEVLLEDVVSALTRVLAEGTSEGKKNASRAL 789 (2054)
Q Consensus 713 ~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~--~e~-r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL 789 (2054)
.. .++..+...+.+.++.++.+++..|..+... ... -....-...++.+..++.+.++.||..|..++
T Consensus 137 --~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~ 207 (278)
T 4ffb_C 137 --IT-------QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLI 207 (278)
T ss_dssp --SH-------HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHH
T ss_pred --HH-------HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 1356677788899999999999999988531 110 00111112445677788999999999999999
Q ss_pred HHhhhc
Q 000145 790 HQLLKH 795 (2054)
Q Consensus 790 ~nL~~~ 795 (2054)
..+...
T Consensus 208 ~~ly~~ 213 (278)
T 4ffb_C 208 VEIYKV 213 (278)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 888653
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=90.90 E-value=4.4 Score=47.54 Aligned_cols=170 Identities=15% Similarity=0.051 Sum_probs=118.7
Q ss_pred chHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHH----hhccCChhHHHHHHHHHHHHHHh---h--
Q 000145 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW----LLKSGGPKGQDASAMALTKLIRA---A-- 589 (2054)
Q Consensus 519 p~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~----LLkS~~~evq~~AA~AL~nLs~~---~-- 589 (2054)
+.+...|.+.+.+-+..+...|......+. +..+. .+..++. -+.+.++.+...+...|..+... .
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~--~~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP--RSLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH--HHHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh--HHHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 345666777788778777777776543221 22222 2333333 22367888888888888776432 1
Q ss_pred ---c---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHH
Q 000145 590 ---D---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD 663 (2054)
Q Consensus 590 ---e---~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALan 663 (2054)
+ ...+|.|++-+.+..+.++..+...+..+....+. ....+.+..-+++.|..+|+.++..+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----------~~v~~~l~~g~ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----------LKMTPMLLDALKSKNARQRSECLLVIEY 193 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----------HHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----------HHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 1 24679999999999999999888888776543221 1246677777889999999999999999
Q ss_pred HhhcChhhhhhhhhCCCH---HHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 664 LFSMRQDICGSLATDEIV---NPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 664 Las~~~e~r~~Iv~~g~V---~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
+-.... .. ...++ +.+.+++.|.+..+|..|..++..+-.
T Consensus 194 li~~~G-~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 194 YITNAG-IS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHC-SG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHhcC-CC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 865322 11 23478 999999999999999999999987764
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.35 E-value=8.6 Score=44.67 Aligned_cols=190 Identities=16% Similarity=0.170 Sum_probs=117.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhccCch---hHHHHH--hcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChh-
Q 000145 89 FISILRSGTPLAKVNVAATLSVLCKDED---LRLKVL--LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV- 162 (2054)
Q Consensus 89 LV~LLks~s~evr~~AA~vL~~Ls~~ee---~r~~v~--~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~- 162 (2054)
|-+-|.+.+...|..+..-|..+..... ...... .....+.+-+.+.+.+..+...++.+|..+..........
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5567888889999999888866543211 111111 1234556667888889999999999999988642210101
Q ss_pred HHHHHHHcCcHHHHHHh-hCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHH
Q 000145 163 GMKIFVTEGVVPTLWDQ-LNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241 (2054)
Q Consensus 163 ~re~Iv~aG~Vp~Lv~L-L~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~ 241 (2054)
......-..++|.|++= +.+.. ..++..+..++..++........ .++.++..+.+.++.++..++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k---~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSR---ATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCcc---HHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 11122234467777764 54433 45777888888777654322101 3567778888899999999999998
Q ss_pred HHHhhcCC-Ccc-hhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhh
Q 000145 242 RLMLAFGD-SIP-TVIDSGAVKALVQLVGQNNDISVRASAADALEALSS 288 (2054)
Q Consensus 242 nLs~~~~~-~r~-~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~ 288 (2054)
++....+. ... ...-...++.+..++. +.+..||..|..++..+-.
T Consensus 165 ~~l~~fg~~~~~~k~~l~~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFLPELLKHVPQLAG-HGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTCCHHHHHHHHGGGHHHHHT-CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCCchhHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHH
Confidence 88743221 111 1111224455666777 5788999999988877654
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=89.94 E-value=9.3 Score=46.05 Aligned_cols=195 Identities=13% Similarity=0.091 Sum_probs=145.7
Q ss_pred hccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhh-CCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCC
Q 000145 471 GKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAA-GGIPPLVQLLEAG--SQKAREVAAHVLWILCCHS 547 (2054)
Q Consensus 471 ve~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~a-GaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~s 547 (2054)
...+.+..|+..+..=+.+.|+.++....++-+...+++...++. -.=|.++..|-.+ ++++--.+-..|+....+
T Consensus 75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~- 153 (341)
T 1upk_A 75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH- 153 (341)
T ss_dssp HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS-
T ss_pred HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHh-
Confidence 344677888888888888999999999999988655554433221 1124455544443 566666777778877764
Q ss_pred hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----------hhhHHHHHHHhcCCCcchHHHHHHHH
Q 000145 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----------SATINQLLALLLGDSPSSKAHVIKVL 616 (2054)
Q Consensus 548 d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-----------~~~Ip~Lv~LL~~~~~~V~~~a~~AL 616 (2054)
+...+.+...+.+-.+++....++-++-..|-.++..+..... ........+|+.+++--.++++..-|
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 5556666677788889999999998888888888877654321 23456678899999999999999999
Q ss_pred HHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000145 617 GHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 617 ~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas 666 (2054)
+-+...........+-+.+..-+..++.+|++.+..++..|..++.-...
T Consensus 234 gelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 234 GELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 99987766666666667777889999999999999999999988876665
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.76 E-value=4.5 Score=46.90 Aligned_cols=193 Identities=13% Similarity=0.137 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHH-HHHHHhhhcCcHHHHHH-------HHccC-----CHHHHHHHH
Q 000145 39 STVAKFLEQLHANMSSPQERELITMRILTIAKAKKE-ARLLIGSHAQAMPLFIS-------ILRSG-----TPLAKVNVA 105 (2054)
Q Consensus 39 ~~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~-ar~~I~~~aGgVp~LV~-------LLks~-----s~evr~~AA 105 (2054)
+.|.++|..|... +.|+.|+..|.+-...-++ +-..... .|.+..|++ .+..+ ...-..+|.
T Consensus 3 ~~i~qli~~L~~p----~~Re~AL~eLsk~Re~~~~La~~LW~S-~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaL 77 (268)
T 2fv2_A 3 EKIYQWINELSSP----ETRENALLELSKKRESVPDLAPMLWHS-FGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNAL 77 (268)
T ss_dssp HHHHHHHHHTSST----TTHHHHHHHHHHHTTTCTTHHHHHHHS-TTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHHHHhhhccccHHHHHHhc-cCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHH
Confidence 4577888888544 4478775555433222122 2223334 566666655 22211 122346777
Q ss_pred HHHHHhccCchhHHHHHhcCChHHHHHhhccC-----CHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhh
Q 000145 106 ATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSE-----STDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQL 180 (2054)
Q Consensus 106 ~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~se-----d~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL 180 (2054)
..|..++.+++.|..+..+...--|..+|+.. -+.+|-.+++.++.|...+ +.+....+.+.++||..++.+
T Consensus 78 aLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~d---d~eVi~fLL~tEiiplCLrim 154 (268)
T 2fv2_A 78 ALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTD---EQEVINFLLTTEIIPLCLRIM 154 (268)
T ss_dssp HHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGC---CHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccC---cHHHHHHHHhhhHHHHHHHHH
Confidence 77888899999999999998776677777652 3568999999999999742 556677778899999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHhcCCCc---------hhHHHHhhCChHHHHh-hhccCCHHHHHHHHHHHHHHH
Q 000145 181 NPKNKQDNVVQGFVTGALRNLCGDKDG---------YWRATLEAGGVDIIVG-LLSSDNAAAQSNAASLLARLM 244 (2054)
Q Consensus 181 ~s~s~~d~~V~e~Al~aL~nL~~~~e~---------r~~aI~eaGGI~~LV~-LL~s~s~evq~~A~~aL~nLs 244 (2054)
..++. --..-|+-++..+-.++.| |..++.. .+..++. +...+++....+++++-.+|+
T Consensus 155 e~Gse---lSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~--vL~~mV~~l~~~ps~RLLKhiircYlRLs 223 (268)
T 2fv2_A 155 ESGSE---LSKTVATFILQKILLDDTGLAYICQTYERFSHVAM--ILGKMVLQLSKEPSARLLKHVVRCYLRLS 223 (268)
T ss_dssp HHSCH---HHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred hhccH---HHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 88762 2233456666666554432 1111111 1222222 234456666666666666666
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=87.34 E-value=13 Score=51.68 Aligned_cols=202 Identities=13% Similarity=0.109 Sum_probs=120.6
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHHHHh--hchhhHHHHHHHhcCC----CcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 559 AVPAFLWLLKSGGPKGQDASAMALTKLIRA--ADSATINQLLALLLGD----SPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 559 aI~aLV~LLkS~~~evq~~AA~AL~nLs~~--~e~~~Ip~Lv~LL~~~----~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
++..+.++++++.....+ ++.+|...... ++.+.+..+..+++.. ++.++..+.-+++.|.+..-.. ..
T Consensus 357 a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~~~Pt~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~----~~ 431 (1056)
T 1lsh_A 357 ALLFLKRTLASEQLTSAE-ATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN----TV 431 (1056)
T ss_dssp HHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT----CS
T ss_pred HHHHHHHHHHcCCCCHHH-HHHHHHHhhccCCCCHHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhcc----CC
Confidence 344445566665544333 44444433322 4556777777777653 3345555666666665321000 00
Q ss_pred hhcccchHHHHH----HhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-------CCHHHHHHHHH
Q 000145 633 SAANKGLRSLVQ----VLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-------NTQMVATQSAR 701 (2054)
Q Consensus 633 l~~~GaI~~LV~----LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d-------gs~~vr~~AA~ 701 (2054)
......++.+.+ .+..++.+.+..+..+|.|+.. ...++.|.+++.. ....++..|.+
T Consensus 432 ~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ 500 (1056)
T 1lsh_A 432 SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIM 500 (1056)
T ss_dssp SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccccccchHHHHHHHH
Confidence 011123444444 4456678888999999999976 3467777777742 23578889999
Q ss_pred HHHHhhCCCCcccchhHHHHhcCChhhHHhhh--hcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcC-CC
Q 000145 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLA--KTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAE-GT 778 (2054)
Q Consensus 702 AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL--~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s-~~ 778 (2054)
||.++....+. .+-+.|..+. ...+.++|..|+..|.. ++|.. ..+..+...+.. .+
T Consensus 501 ALr~~~~~~p~-----------~v~~il~~i~~n~~e~~EvRiaA~~~Lm~--t~P~~-------~~l~~ia~~l~~E~~ 560 (1056)
T 1lsh_A 501 ALRNIAKRDPR-----------KVQEIVLPIFLNVAIKSELRIRSCIVFFE--SKPSV-------ALVSMVAVRLRREPN 560 (1056)
T ss_dssp TTTTGGGTCHH-----------HHHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCCH-------HHHHHHHHHHTTCSC
T ss_pred HHHHhhhhchH-----------HHHHHHHHHhcCCCCChHHHHHHHHHHHH--HCcCH-------HHHHHHHHHHhhCch
Confidence 99999752211 1234466777 44788999988888853 23331 234556655554 57
Q ss_pred HHHHHHHHHHHHHhhhcC
Q 000145 779 SEGKKNASRALHQLLKHF 796 (2054)
Q Consensus 779 ~evr~~Aa~AL~nL~~~~ 796 (2054)
.++.......|.++....
T Consensus 561 ~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 561 LQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 888888888888888764
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=86.55 E-value=1.7 Score=54.99 Aligned_cols=206 Identities=12% Similarity=0.087 Sum_probs=131.8
Q ss_pred hHHHHHhhccCChhHHHHHHHHHHHHHHhhch----------hhHHHHHHHh---cCC----C---cchHHHHHHHHHHH
Q 000145 560 VPAFLWLLKSGGPKGQDASAMALTKLIRAADS----------ATINQLLALL---LGD----S---PSSKAHVIKVLGHV 619 (2054)
Q Consensus 560 I~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~----------~~Ip~Lv~LL---~~~----~---~~V~~~a~~AL~~L 619 (2054)
...|+.-|-++..++|..|+.+|..+.+.... ...-.|+-++ +.+ | ..|++.++++|+.+
T Consensus 176 cE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL 255 (800)
T 3oc3_A 176 FEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI 255 (800)
T ss_dssp THHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH
Confidence 34455556677888888888888888765311 1111111111 111 1 24888999999988
Q ss_pred HhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHH
Q 000145 620 LTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQS 699 (2054)
Q Consensus 620 a~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~A 699 (2054)
...+.+ ...+..|+..+....+++|..+.-.|.++.. .... -.++++.++..|.+.+++||..|
T Consensus 256 -~hLp~e---------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D----LL~~--Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 256 -YPLIGP---------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE----FVED--KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp -TTTSCS---------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG----GCCC--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred -HhCChh---------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH----HHHH--HHHHHHHHHhhcCCcccHHHHHH
Confidence 544432 2245555555577789999999999998821 1111 25678888889999999999999
Q ss_pred HHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCH--HHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC
Q 000145 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI--DAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG 777 (2054)
Q Consensus 700 A~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~--~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~ 777 (2054)
|.+|..++. +. ... .++..+.+.|.+-++ ......+..|+.|...|.. ....+..+|.|..++++.
T Consensus 320 AetLiPIA~--p~--~l~------~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHt 387 (800)
T 3oc3_A 320 AELLCHFPI--TD--SLD------LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSP 387 (800)
T ss_dssp HHHHTTSCC--SS--THH------HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCS
T ss_pred HHHhhhhcc--hh--hHH------HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCC
Confidence 999999882 32 111 144445555554211 1123455566666554421 112346789999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q 000145 778 TSEGKKNASRALHQLL 793 (2054)
Q Consensus 778 ~~evr~~Aa~AL~nL~ 793 (2054)
-..||.++..+|..+.
T Consensus 388 ITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 388 VPEVRTSILNMVKNLS 403 (800)
T ss_dssp SHHHHHHHHHHTTTCC
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999999998776
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=86.25 E-value=1.3e+02 Score=42.06 Aligned_cols=227 Identities=13% Similarity=0.098 Sum_probs=126.0
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhH
Q 000145 85 AMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVG 163 (2054)
Q Consensus 85 gVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~ 163 (2054)
.++.++..+.+++++.|..|-..|..+-..++ +...+..+|.. .++.+|-.|+..|.+.....-+.-+..
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 35556666667778888888888887755443 34444555655 689999999999998875210001122
Q ss_pred HHHHHHcCcHHHHHHhhCCCC--CCChhHHHHHHHHHHHHhcCC-CchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHH
Q 000145 164 MKIFVTEGVVPTLWDQLNPKN--KQDNVVQGFVTGALRNLCGDK-DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2054)
Q Consensus 164 re~Iv~aG~Vp~Lv~LL~s~s--~~d~~V~e~Al~aL~nL~~~~-e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL 240 (2054)
.+.-++...+..+.+.-..+. ..++.+..+...++..+.... +..|. ..++-++..+.. ++......+.+|
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp-----~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWP-----TFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCT-----THHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhcc-----HHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 233344445555555433221 124556667777777776542 12232 235556665543 456677788888
Q ss_pred HHHHhhcCCCcc-------------hhcc--cchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHH
Q 000145 241 ARLMLAFGDSIP-------------TVID--SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPV 305 (2054)
Q Consensus 241 ~nLs~~~~~~r~-------------~i~~--sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~ 305 (2054)
..++..-.+... .+.. ...+..+..++....+..+...+..++..+... ..-..+.+.+-++.
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW--I~i~~i~~~~ll~~ 251 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW--IPLGYIFETKLIST 251 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT--SCTHHHHSSSHHHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh--cCHHHhccchHHHH
Confidence 887743111100 0111 112233334444445556666777777777663 22234566666666
Q ss_pred HH-HhhcCCchhhhhhhhhhhhhhHHHHHHHHHhc
Q 000145 306 LI-GAIVAPSKECMQGQRGQALQGHATRALANIYG 339 (2054)
Q Consensus 306 LI-eLL~s~s~e~~q~~~~~~lqe~Al~ALanLsG 339 (2054)
|+ ..+.++. ++..|+.||..+.+
T Consensus 252 L~~~~L~~~~-----------~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 252 LIYKFLNVPM-----------FRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHTSSSHH-----------HHHHHHHHHHHHHH
T ss_pred HHHHhcCChH-----------HHHHHHHHHHHHHh
Confidence 63 5553321 67788888888764
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=85.62 E-value=0.3 Score=49.91 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=35.5
Q ss_pred CCceEEEEEcCCcchh-----hcCCCccceEeeccCC--CCcccceeee
Q 000145 2009 PGCLTVTIKRGNNLKQ-----TMGTTNAFCRLTIGNG--PPRQTKVIFT 2050 (2054)
Q Consensus 2009 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~~ 2050 (2054)
+|.|.|+|.+|.||+. ..|.++.||++.+|+. .-++|+|+.+
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~ 50 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN 50 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCC
Confidence 6899999999999985 4699999999999985 5668888753
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=84.59 E-value=5.8 Score=45.60 Aligned_cols=137 Identities=10% Similarity=0.044 Sum_probs=92.9
Q ss_pred hhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHH-hhccCChhHHHHHHHHHHHHHH-hhchhhHHHHHHH
Q 000145 523 QLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLW-LLKSGGPKGQDASAMALTKLIR-AADSATINQLLAL 600 (2054)
Q Consensus 523 ~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~-LLkS~~~evq~~AA~AL~nLs~-~~e~~~Ip~Lv~L 600 (2054)
.|..++...+|..|+..|+.+ ... ...++.+.. +..+++-.+++.++.++..++. ......++.+.+.
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W 147 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEW 147 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred HHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 445666789999999988877 211 123455555 5667788999999999999986 3223468888999
Q ss_pred hcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcc-cchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhh
Q 000145 601 LLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAAN-KGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLA 676 (2054)
Q Consensus 601 L~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~-GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv 676 (2054)
.++++..++..+.+.++.-+.....+ .+. -.++.|-.+..+++.-+|...++.|..++..+|+-....+
T Consensus 148 ~~d~n~~VRR~Ase~~rpW~~~~~~k-------~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 148 LKSSNLHTRRAATEGLRIWTNRPYFK-------ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp HHCSSHHHHHHHHHHTCSGGGSTTTT-------TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHhhHHHhccchhh-------cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 99999999988777654321110000 011 1344455566667899999999999999987776554443
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=83.63 E-value=25 Score=40.46 Aligned_cols=143 Identities=13% Similarity=0.100 Sum_probs=95.2
Q ss_pred hHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHH-HhccCCHHHHHHHHHHHHHHhh-cChh
Q 000145 593 TINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQ-VLNSSNEENQEYAASVLADLFS-MRQD 670 (2054)
Q Consensus 593 ~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~-LLks~s~evre~Aa~ALanLas-~~~e 670 (2054)
.++....|.+++..+++..++..++.+ . .. ...++.+.. +...++..+++.++.++..++. .+++
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~--~~----------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S--KD----------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T--TS----------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c--Cc----------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH
Confidence 344445566677777887777766654 1 11 113555555 5556789999999999999985 3332
Q ss_pred hhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHH
Q 000145 671 ICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750 (2054)
Q Consensus 671 ~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~N 750 (2054)
..++.+...+++++..+|+.|+..+..-+.. +...... .-+++.|-.+..+++.-|+.....+|..
T Consensus 139 --------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k~dp-----~~ll~iL~~L~~D~s~yVrKSVan~LrD 204 (240)
T 3l9t_A 139 --------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFKENP-----NEAIRRIADLKEDVSEYVRKSVGNALRD 204 (240)
T ss_dssp --------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTTTCH-----HHHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhhcCH-----HHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 2567888899999999999988777543321 1100111 1144555667777889999999999999
Q ss_pred hhC-ChHHHHHHH
Q 000145 751 LLS-DPDIAAEVL 762 (2054)
Q Consensus 751 La~-~~e~r~~Iv 762 (2054)
++. +|+....++
T Consensus 205 ~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 205 ISKKFPDLVKIEL 217 (240)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HhhhCHHHHHHHH
Confidence 997 777655443
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=83.26 E-value=50 Score=39.86 Aligned_cols=200 Identities=12% Similarity=0.061 Sum_probs=136.6
Q ss_pred HHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhh-----ccccHHHHHhhhcCCChhhhHHHHHHHHH
Q 000145 426 QWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIG-----KREGIQLLISLLGLSSEQHQEYAVQLIAI 500 (2054)
Q Consensus 426 ~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Iv-----e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~n 500 (2054)
..+...+.+..|+..+..=+-+.+..++..+.++-....+.+...+ ....+..|+..+. ++++-..+-..|+.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence 3455567788888888888999999999999888776443322111 1223333444433 45566666677777
Q ss_pred HhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhc-CChhHHHHHHH--cCChHHHHHhhccCChhHHHH
Q 000145 501 LTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC-HSEDIRACVES--AGAVPAFLWLLKSGGPKGQDA 577 (2054)
Q Consensus 501 Ls~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~-~sd~~r~~I~e--~GaI~aLV~LLkS~~~evq~~ 577 (2054)
+..+ +.....+...+.+..+.+....++-++-..|..++..|-. |.....+.+.. .......-.++.+++--+++.
T Consensus 150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 7773 4444445566677788888888899999999988887744 33333333332 123445567999999999999
Q ss_pred HHHHHHHHHHhh-----------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHH
Q 000145 578 SAMALTKLIRAA-----------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDL 628 (2054)
Q Consensus 578 AA~AL~nLs~~~-----------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~ 628 (2054)
+...|+.+..+. +..-+..++.+|++.+..++..+-+....+......+..
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~ 290 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQP 290 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHH
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChH
Confidence 999999998663 234567899999999999999888887776654444333
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=82.59 E-value=32 Score=47.84 Aligned_cols=207 Identities=17% Similarity=0.162 Sum_probs=119.6
Q ss_pred HHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhh-hcchHHHHhhhhcccchHHHHHHhcc----CCHHHHHHHH
Q 000145 584 KLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTM-ALQEDLVQKGSAANKGLRSLVQVLNS----SNEENQEYAA 658 (2054)
Q Consensus 584 nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~-~~~~d~~~~~l~~~GaI~~LV~LLks----~s~evre~Aa 658 (2054)
-+........+..+.+++..++-... .+..++..+.+. .+.. ..++.+..++++ +++.+++.+.
T Consensus 348 al~~aGT~~a~~~i~~~i~~~~l~~~-ea~~~l~~~~~~~~Pt~----------e~l~~~~~l~~~~~~~~~~~l~~ta~ 416 (1056)
T 1lsh_A 348 AVPAMATSEALLFLKRTLASEQLTSA-EATQIVASTLSNQQATR----------ESLSYARELLNTSFIRNRPILRKTAV 416 (1056)
T ss_dssp HHHHHCSHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCH----------HHHHHHHHHHTCHHHHTCHHHHHHHH
T ss_pred HhHhcCCHHHHHHHHHHHHcCCCCHH-HHHHHHHHhhccCCCCH----------HHHHHHHHHHhCcccccCHHHHHHHH
Confidence 33333344556667777776554432 345555544332 1222 246667777765 3677888888
Q ss_pred HHHHHHhhc---ChhhhhhhhhCCCHHHHHHH----hccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHh
Q 000145 659 SVLADLFSM---RQDICGSLATDEIVNPCMRL----LTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIK 731 (2054)
Q Consensus 659 ~ALanLas~---~~e~r~~Iv~~g~V~~Lv~L----L~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~ 731 (2054)
-+++.|... +...| ....++.+.+. +..++..-+..+.++|+|+.. +. .++.|..
T Consensus 417 La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p~------------~l~~l~~ 478 (1056)
T 1lsh_A 417 LGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--PN------------SIKKIQR 478 (1056)
T ss_dssp HHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--GG------------GHHHHHT
T ss_pred HHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC--hh------------HHHHHHH
Confidence 777777542 11111 22334555544 456777778889999999974 32 5566666
Q ss_pred hhhc-------CCHHHHHHHHHHHHHhhCC-hHHHHHHHhcCcHHHHHHHH--cCCCHHHHHHHHHHHHHhhhcCCCchh
Q 000145 732 LAKT-------SSIDAAETAVAALANLLSD-PDIAAEVLLEDVVSALTRVL--AEGTSEGKKNASRALHQLLKHFPVGDV 801 (2054)
Q Consensus 732 LL~s-------~d~~Vre~Al~AL~NLa~~-~e~r~~Iv~~g~I~~LV~LL--~s~~~evr~~Aa~AL~nL~~~~~~~e~ 801 (2054)
++.. ....++..|+++|.+++.. |.. +-+.+.++. ...++++|..|...|.+- .|.
T Consensus 479 ~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t---~P~--- 544 (1056)
T 1lsh_A 479 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVFFES---KPS--- 544 (1056)
T ss_dssp TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CCC---
T ss_pred hhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHHHHH---CcC---
Confidence 6642 3467888999999999853 321 233455666 445899999888888532 221
Q ss_pred HhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 802 LKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 802 i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
...+..+...+.. +...+........+.+++.
T Consensus 545 -------~~~l~~ia~~l~~-E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 545 -------VALVSMVAVRLRR-EPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp -------HHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHh
Confidence 2234555555542 2334445555555555553
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=81.10 E-value=6.8 Score=49.19 Aligned_cols=122 Identities=18% Similarity=0.171 Sum_probs=93.5
Q ss_pred cCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-hhhHHHHHHHhcCCC
Q 000145 527 AGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-SATINQLLALLLGDS 605 (2054)
Q Consensus 527 s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-~~~Ip~Lv~LL~~~~ 605 (2054)
.+++..+.-|+..+...-.+-++.++ .++.+++.+..+++..+|..|...|..++.+.. .++...|.+||..++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtdd 113 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTDD 113 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhccc
Confidence 45789999999999988777666544 478999999999999999999999999998621 457788999999988
Q ss_pred cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHH
Q 000145 606 PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664 (2054)
Q Consensus 606 ~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanL 664 (2054)
+.-...+..+|..+....+ .+.+..|..-+.++++.+|+.+..-|..=
T Consensus 114 ~~E~~~V~~sL~sllk~Dp-----------k~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 114 SAEFNLVNNALLSIFKMDA-----------KGTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHHHHHHHHHHHHHHHHCH-----------HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCh-----------HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 8777777788777654322 12455566655567888998877766543
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=80.19 E-value=13 Score=46.84 Aligned_cols=163 Identities=16% Similarity=0.186 Sum_probs=108.1
Q ss_pred cCChhHHHHHHHHHHHHHHh-h--chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHH
Q 000145 569 SGGPKGQDASAMALTKLIRA-A--DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQV 645 (2054)
Q Consensus 569 S~~~evq~~AA~AL~nLs~~-~--e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~L 645 (2054)
.+++..+.-|+..+..+..+ + ...++..++.|..+++..|+.++.+.|-.++.. +.+.+ ..+.|+++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~k------iaDvL~Ql 108 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPR------VADILTQL 108 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHH------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhh------HHHHHHHH
Confidence 45788899999998888766 2 356889999999999999999887777666533 22322 48899999
Q ss_pred hccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCC
Q 000145 646 LNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGD 725 (2054)
Q Consensus 646 Lks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~ga 725 (2054)
|.++++.-....-.+|..|...++ .+.+..+...+..+++.+|+.+..=|..-....+.. ... .-.+.-+
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~-~l~-~E~E~~i 178 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDE-VLT-KEVEELI 178 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTT-TSC-HHHHHHH
T ss_pred HhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchh-hcc-HHHHHHH
Confidence 999988888888888888876443 244566666666678888887666554333211110 111 1122234
Q ss_pred hhhHHhhhhcCCHHHHHHHHHHHHHh
Q 000145 726 VKPLIKLAKTSSIDAAETAVAALANL 751 (2054)
Q Consensus 726 V~~Lv~LL~s~d~~Vre~Al~AL~NL 751 (2054)
+..+.+.|.+-+.+--.-.+..|..+
T Consensus 179 ~~~ikK~L~DVT~~EF~L~m~lL~~l 204 (507)
T 3u0r_A 179 LTESKKVLEDVTGEEFVLFMKILSGL 204 (507)
T ss_dssp HHHHHHHTTSCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHhccccHHHHHHHHHHHHhc
Confidence 55566677665555555566666555
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2054 | ||||
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-27 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-23 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-18 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-17 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 3e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 6e-09 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-05 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-23 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 8e-22 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 6e-15 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 7e-13 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-09 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 5e-09 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 8e-09 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 9e-09 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 5e-06 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 5e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-22 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 4e-14 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 6e-10 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 4e-07 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 9e-07 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 3e-06 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 7e-05 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-04 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-04 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 0.002 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 2e-19 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 2e-15 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 9e-14 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 6e-09 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 2e-07 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 6e-07 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 3e-06 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 5e-06 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 3e-04 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 0.003 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 7e-09 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 4e-07 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 9e-05 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-07 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 3e-06 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-05 | |
| d1lrva_ | 233 | a.118.1.5 (A:) Leucine-rich repeat variant {Azotob | 0.002 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 116 bits (291), Expect = 2e-27
Identities = 90/555 (16%), Positives = 179/555 (32%), Gaps = 37/555 (6%)
Query: 32 DDPESTMSTVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFIS 91
DD E + + + L N + + ++K K+ +R I Q + +
Sbjct: 10 DDAELATRAIPELTKLL--NDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVR 66
Query: 92 ILR-SGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALY 150
++ + A TL L + L + G IP L+ +L S A L+
Sbjct: 67 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126
Query: 151 EVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWR 210
+ G + + LN N + T L+ L
Sbjct: 127 NLL----LHQEGAKMAVRLAGGLQKMVALLNKTNVK---FLAITTDCLQILAYGNQESKL 179
Query: 211 ATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN 270
L +GG +V ++ + S + +++ + P ++++G ++AL +
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 239
Query: 271 NDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHA 330
+ V+ LS + K + + L+G+ C G +
Sbjct: 240 SQRLVQNCLWTL-RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298
Query: 331 TRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQ 390
+ G +V + ++ I AL + ++ +
Sbjct: 299 KNKMMVCQVGGIEALVRT--VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYG 356
Query: 391 IEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE 450
+ ++V LL P + + + + + +L + A L+ L+ A D +
Sbjct: 357 L-PVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 415
Query: 451 YLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKW 510
+ T+ E G+ E+ E + IL + ++
Sbjct: 416 RTSMGGTQQQFVE--------------------GVRMEEIVEGCTGALHILA-RDVHNRI 454
Query: 511 AITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG 570
I IP VQLL + + + VAA VL L ++ +E+ GA LL S
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSR 513
Query: 571 GPKGQDASAMALTKL 585
+A L ++
Sbjct: 514 NEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (258), Expect = 2e-23
Identities = 92/588 (15%), Positives = 178/588 (30%), Gaps = 80/588 (13%)
Query: 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN 184
IP L LL E AA ++++S + I + +V + + +N
Sbjct: 17 RAIPELTKLLNDEDQVVVNKAAVMVHQLSK----KEASRHAIMRSPQMVSAIVRTM--QN 70
Query: 185 KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244
D G L NL ++G A ++GG+ +V +L S
Sbjct: 71 TNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSP---------------- 113
Query: 245 LAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVP 304
SV A L L AK AV A G+
Sbjct: 114 ---------------------------VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQ 146
Query: 305 VLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADI 364
++ + + + + + + L + ++ +
Sbjct: 147 KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 206
Query: 365 IGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFL 424
L + K + + + + N L R L A+
Sbjct: 207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT------- 259
Query: 425 SQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484
+ L+ L+ +V L+ L + + GI+ L+ +
Sbjct: 260 -KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVL 318
Query: 485 LSSEQHQEY-----AVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHV 539
+ ++ A++ + ++ + ++ A+ G+P +V+LL S A
Sbjct: 319 RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 378
Query: 540 LWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLA 599
L A + GA+P + LL Q ++M T+
Sbjct: 379 LIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV----------- 427
Query: 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAAS 659
+++ L + ++ + + VQ+L S E Q AA
Sbjct: 428 -----EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAG 482
Query: 660 VLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707
VL +L + ++ ++ + P LL S + VAT +A L +S
Sbjct: 483 VLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.0 bits (216), Expect = 4e-18
Identities = 87/605 (14%), Positives = 177/605 (29%), Gaps = 86/605 (14%)
Query: 197 ALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVID 256
A+ NL +D A L + + LL+ ++ + AA ++ +L +
Sbjct: 1 AVVNLINYQD---DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 257 SGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKE 316
V A+V+ + ND+ A L LS + A+ + G+P L+ + +P
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDS 116
Query: 317 CMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPR----LAAPVADIIGALAYAL 372
+ +A L N+ + + + L + L
Sbjct: 117 ---------VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167
Query: 373 MVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAE 432
+ + A LV +++ + + + + L + A
Sbjct: 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227
Query: 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQE 492
+ L +T + + + + +L L + L+ LLG
Sbjct: 228 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVT 284
Query: 493 YAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREV-----AAHVLWILCCHS 547
A +++ LT +K + GGI LV+ + + A L +
Sbjct: 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 344
Query: 548 EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPS 607
E + V +P + LL + + L + +
Sbjct: 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA-------------------- 384
Query: 608 SKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667
+ LVQ+L ++++ Q +
Sbjct: 385 -----------------LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT----- 422
Query: 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVK 727
+Q + +EIV C AL L+R N++ +
Sbjct: 423 QQQFVEGVRMEEIVEGC---------------TGALHILAR----DVHNRIVIRGLNTIP 463
Query: 728 PLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASR 787
++L + + A L L D + A + E + LT +L A+
Sbjct: 464 LFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAA 523
Query: 788 ALHQL 792
L ++
Sbjct: 524 VLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.3 bits (209), Expect = 3e-17
Identities = 74/576 (12%), Positives = 172/576 (29%), Gaps = 63/576 (10%)
Query: 1295 IKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYK 1354
D++LA +A+P L +L+ + + A V + +L+ S+ ++ ++ ++ +
Sbjct: 9 QDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM--RSPQMVSAIVR 66
Query: 1355 ILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAF- 1413
+ + + +E R A + + + + S I L+ ++ S + V+ A+
Sbjct: 67 TMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLH 126
Query: 1414 ERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGI 1473
LL E V + +V L++ TN + + T L L KL ++ +G
Sbjct: 127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG 186
Query: 1474 IDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQH 1533
++++ + + + + + + L Q+
Sbjct: 187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 246
Query: 1534 SALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQ 1593
+ + ++ L+ L S + +L++L + +
Sbjct: 247 CLWTLRNLSDAATK-----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 301
Query: 1594 DITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEIAKVIIQDDPQ 1653
+ + + V+ + + A Q+
Sbjct: 302 MMVCQV--------------GGIEALVRTVLRAGDREDI-TEPAICALRHLTSRHQEAEM 346
Query: 1654 PPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTDAS 1713
+++ L + L ++ + V + + +
Sbjct: 347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL------------------CPA 388
Query: 1714 SAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDP 1773
+ + + G I L+ LL + +Q
Sbjct: 389 NHAPLREQGAIPRLVQLLVRAH--------------------QDTQRRTSMGGTQQQFVE 428
Query: 1774 QTRSESGKLLAALALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQNF 1833
R E AL L++ ++ + LL + ++ VA L
Sbjct: 429 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCEL 487
Query: 1834 VMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAA 1869
+ A+ G + ELL S N VA AA
Sbjct: 488 AQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAA 522
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.2 bits (149), Expect = 4e-10
Identities = 70/524 (13%), Positives = 164/524 (31%), Gaps = 36/524 (6%)
Query: 1511 AAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESP 1570
A + + L +L D + + A + + +K S + +P Q++ ++ +++
Sbjct: 15 ATRAIPELTKLLNDEDQVV--VNKAAVMVHQLSKKEASRHAIMRSP-QMVSAIVRTMQNT 71
Query: 1571 SHA-IQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKAL---EKI 1626
+ + L +L I + LV++ G + ++ A+ L
Sbjct: 72 NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 131
Query: 1627 STSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLV 1686
AV AGG+ ++ ++ + + + + ++ LV
Sbjct: 132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 191
Query: 1687 KMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEA 1746
++ + + + +L +S+ + +AG + AL L L
Sbjct: 192 NIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTL 251
Query: 1747 LFNNGRIRQMKVSKYAIAPLSQYLLD--PQTRSESGKLLAALALGDLSQHEGLARASASV 1804
+ + + + + L Q L + + +L+ L + + +
Sbjct: 252 RNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIE 311
Query: 1805 SACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEV 1864
+ R ++ + + E + A+ L + + + AV G+ VV +LL +
Sbjct: 312 ALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWP 371
Query: 1865 AGQAALLTKFLFSNHTLQEYV-----------------SNELIRSLTAALERELWSTATI 1907
+A + + + R + ++ +
Sbjct: 372 LIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431
Query: 1908 NEEVLRTLHVIFMNFPKLHTSEAATL---CIPHLVGALKSGSEAAQGSVLDTLCLLRNSW 1964
EE++ + + IP V L S E Q LC L
Sbjct: 432 MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA--- 488
Query: 1965 STMPIDVAKSQAMIAAEAIPILQMLMKTCPPSFHERADSLLHCL 2008
D ++A+ A A L L+ + A ++L +
Sbjct: 489 ----QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.9 bits (143), Expect = 2e-09
Identities = 71/497 (14%), Positives = 144/497 (28%), Gaps = 38/497 (7%)
Query: 1386 IASECIQPLISLMQSDLSIVVESAVCAFERLL-DDEQQVELVEGYDVVDLLVRLVSGTNH 1444
+A+ I L L+ + +VV A +L + + ++ +V +VR + TN
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73
Query: 1445 -RLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVA-PSALCSTIAELFRILTNS 1502
T L L R + K+G I + +L S L I L +L +
Sbjct: 74 VETARCTAGTLHNLSHHREGLL-AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132
Query: 1503 SAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEP 1562
+ A ++ + +L + + + ++ + L+ L Q +
Sbjct: 133 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192
Query: 1563 LLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKA 1622
++ + + +L L + I + L L Q +
Sbjct: 193 IMRTYTYEK--LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWT 250
Query: 1623 LEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPV 1682
L +S + K G + + +++ DD + + N + +
Sbjct: 251 LRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310
Query: 1683 VVLVKMLHSTLES-----TITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCE 1737
LV+ + + AL L + + + + ++ LL
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370
Query: 1738 ETSGRLLEALFNNGRIRQMKVSKY---AIAPLSQYLLDPQTRSESGKLLAALALGDLSQH 1794
+ + N AI L Q L+ + + ++
Sbjct: 371 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRA---HQDTQRRTSMGGTQQQFV 427
Query: 1795 EGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQ 1854
EG+ AL L D NR + I +
Sbjct: 428 EGVRMEEIVEGCTGALHILARDVH---------------------NRIVIRGLNTIPLFV 466
Query: 1855 ELLLSTNAEVAGQAALL 1871
+LL S + AA +
Sbjct: 467 QLLYSPIENIQRVAAGV 483
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (142), Expect = 3e-09
Identities = 78/553 (14%), Positives = 168/553 (30%), Gaps = 44/553 (7%)
Query: 1079 RIIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDT 1138
R IP L LL ++ + AA + L + + V+ ++ + +
Sbjct: 17 RAIPELTKLLNDEDQVVVNKAAVMVHQL-SKKEASRHAIMRSPQMVSAIVRTMQNTNDVE 75
Query: 1139 PNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVA 1198
L L + + IP LV +L A
Sbjct: 76 TARCTAG------------TLHNLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYA 121
Query: 1199 VRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYE 1258
+ L ++ + K+ + AGGL + L+ + T L + + N +
Sbjct: 122 ITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII 181
Query: 1259 ASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASEC 1318
+ L+ ++ + L + ++ + + + +
Sbjct: 182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ 241
Query: 1319 ELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGN 1378
L + ++ S +K + + G L++ N + L + N
Sbjct: 242 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCNNYKN 300
Query: 1379 AKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL----DDEQQVELVEGYDVVDL 1434
++ E + + D + E A+CA L + E V + + +
Sbjct: 301 KMMVCQVGGIEALVRTVL-RAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359
Query: 1435 LVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAE 1494
+V+L+ +H + LI+ + + G I
Sbjct: 360 VVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP------------------R 401
Query: 1495 LFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKL 1554
L ++L + + + + F+ ++ + + G AL L + + L
Sbjct: 402 LVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN- 460
Query: 1555 TPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILN 1614
I + L SP IQ++ +L L + + I + A PL +L
Sbjct: 461 ----TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEG 516
Query: 1615 LQQTAVKALEKIS 1627
+ A L ++S
Sbjct: 517 VATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.4 bits (139), Expect = 6e-09
Identities = 69/520 (13%), Positives = 140/520 (26%), Gaps = 43/520 (8%)
Query: 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL-TSNTQ 693
A + + L ++LN ++ AA ++ L + + ++V+ +R + +N
Sbjct: 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74
Query: 694 MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA-NLL 752
A +A L LS ++ G + L+K+ + A+ L LL
Sbjct: 75 ETARCTAGTLHNLSH----HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLL 130
Query: 753 SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVV 812
V L + + +L + + + L L ++ + +
Sbjct: 131 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQAL 190
Query: 813 LTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAE 872
+ ++ + + + ++ L L +
Sbjct: 191 VNIMRTYTYEK------------LLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238
Query: 873 GPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALLIC 932
L + L L + ++ G +
Sbjct: 239 PSQRLVQNCLWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294
Query: 933 AAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRGYMERTAFQEADD 992
K + + L + D + + E
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354
Query: 993 FDVPDPATILGGTVALWLLLIISSFLRNNNVT------VMEAGALEALSDKLASYTSNPQ 1046
+ +P +L L+ +RN + + E GA+ L L + Q
Sbjct: 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQ 414
Query: 1047 A-------------EFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEV 1093
E + L IL +D + + + IP LL S
Sbjct: 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE 474
Query: 1094 IDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGH 1133
+ AA + L + K AI GA A L L+
Sbjct: 475 NIQRVAAGVLCEL--AQDKEAAEAIEAEGATAPLTELLHS 512
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (137), Expect = 1e-08
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 62 TMRILTIAKAKKEARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKV 121
L I R++I +PLF+ +L S + A L L +D++ +
Sbjct: 439 CTGALHILARDVHNRIVIRG-LNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAI 497
Query: 122 LLGGCIPPLLSLLKSESTDTRKAAAEALYEVS 153
G PL LL S + AA L+ +S
Sbjct: 498 EAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (109), Expect = 2e-05
Identities = 85/539 (15%), Positives = 166/539 (30%), Gaps = 33/539 (6%)
Query: 1218 EAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVL-HLGSR 1276
+ LTK L+ Q + ++ S ++ ++ + +
Sbjct: 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74
Query: 1277 GARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTS 1336
A LH L + +P LV ML + + L A+ L L
Sbjct: 75 ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134
Query: 1337 KACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLIS 1396
L+ + +L+ + L L + +GN + +AS Q L++
Sbjct: 135 AKM--AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVN 192
Query: 1397 LMQSDLSI-VVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALI 1455
+M++ ++ + + L + + L ++ + RLV+ + L
Sbjct: 193 IMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLR 252
Query: 1456 KLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIV 1515
L K + ++ + L + + L + N+ +
Sbjct: 253 NLSDA--ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310
Query: 1516 EPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQ--VIEPLLSFLESPSHA 1573
E L +L+ A+ AL ++ + Q + + ++ L PSH
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370
Query: 1574 IQQLGTELLTHLLAQEHFQQDITTK-NAVVPLVQLAGIGILNLQQTAVKALEKISTSWPK 1632
T L LA + A+ LVQL + Q+ +
Sbjct: 371 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430
Query: 1633 AVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHST 1692
+ + A I+ D + N + + V++L+S
Sbjct: 431 RMEEIVEGCTGALHILARDV------HNRIVIRGLNTIP------------LFVQLLYSP 472
Query: 1693 LESTITVALNAL--LIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEALFN 1749
+E+ VA L L D +AE + G L +LL S + E + LF
Sbjct: 473 IENIQRVAAGVLCELAQ---DKEAAEAIEAEGATAPLTELLHS-RNEGVATYAAAVLFR 527
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 104 bits (259), Expect = 1e-23
Identities = 68/486 (13%), Positives = 132/486 (27%), Gaps = 60/486 (12%)
Query: 86 MPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKSESTDTRKA 144
+P + L S + A + C DE + +V G I L+ LL+S + + ++A
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 145 AAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGD 204
AA AL + + + L + +Q +TG L NL
Sbjct: 64 AAGALRNLV----FRSTTNKLETRRQNGIREAVSLLRRTGNAE--IQKQLTGLLWNLS-- 115
Query: 205 KDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALV 264
+ L A + ++ + SG
Sbjct: 116 STDELKEELIADALPVLADRVIIPF---------------------------SGWCDGNS 148
Query: 265 QLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAI-----VAPSKECMQ 319
+ + D V +A L LSS + + + L+ + + +
Sbjct: 149 NMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSV 208
Query: 320 GQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAA----PVADIIGALAYALMVF 375
L + R A + L ++ +
Sbjct: 209 ENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268
Query: 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQW------VS 429
E+ + + L+ E A+ +L + L
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328
Query: 430 HAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLS--- 486
+ + L+ +DV L+ + R + +G + + LL
Sbjct: 329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LLHRVMG-NQVFPEVTRLLTSHTGN 386
Query: 487 ---SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA-GSQKAREVAAHVLWI 542
SE A + L ++ + ++ L + S KA E A +L
Sbjct: 387 TSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446
Query: 543 LCCHSE 548
+ E
Sbjct: 447 MWSSKE 452
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.7 bits (244), Expect = 8e-22
Identities = 68/438 (15%), Positives = 140/438 (31%), Gaps = 42/438 (9%)
Query: 186 QDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245
QD Q +++ C + + + GG+ +V LL S N Q AA L L+
Sbjct: 14 QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73
Query: 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPV 305
+ ++ V L+ + + ++ L LSS K + AD +PV
Sbjct: 74 RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE--LKEELIADALPV 131
Query: 306 LIGAIVAPSKECMQGQRGQA-------LQGHATRALANI-------------YGGMPALV 345
L ++ P G + + +AT L N+ G + +L+
Sbjct: 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLM 191
Query: 346 VYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVD-----DEPFDARQIEDILVMLLK 400
Y+ + R + + + L + E
Sbjct: 192 AYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFS 251
Query: 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVR------EYLIL 454
+K++ + N S W+ H++A + + L+ + D L
Sbjct: 252 NKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL 311
Query: 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514
+ +K K +G+ + LL + L++ ++ +
Sbjct: 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMG 369
Query: 515 AGGIPPLVQLLEAG------SQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK 568
P + +LL + S+ A + + L + S+ + + L +
Sbjct: 370 NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429
Query: 569 SGG-PKGQDASAMALTKL 585
S PK +A+ + L+ +
Sbjct: 430 SSASPKAAEAARLLLSDM 447
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.2 bits (188), Expect = 6e-15
Identities = 66/444 (14%), Positives = 128/444 (28%), Gaps = 43/444 (9%)
Query: 1560 IEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAGIGILNLQQT 1618
I + +L S Q +G + H Q E +Q + + LV L N+QQ
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 1619 AVKALEKISTSWP---KAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLS-------- 1667
A AL + GI E ++ + LS
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 1668 -------NVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQ 1720
+ + A L DA
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 1721 AGVIDALLDLLRSH----QCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTR 1776
+G+ID+L+ +++ +C++ S + +N R L + T
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243
Query: 1777 SESGKLL-----------AALALGDLSQHEGLARASASVSACRALISLLEDQSTDE---- 1821
S L + + + A R ++L+ D
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEA 303
Query: 1822 -MKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFSNHT 1880
+ +M S ++ + G+ + LL S N++V A L + +
Sbjct: 304 CAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL 363
Query: 1881 LQEYVSNELIRSLTAALERELWST---ATINEEVLRTLHVIFMNFPKLHTSEAATLCIPH 1937
L + N++ +T L +T I T+ + + P+L ++ + +
Sbjct: 364 LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNN 423
Query: 1938 LVGALKS-GSEAAQGSVLDTLCLL 1960
++ +S S A + L +
Sbjct: 424 IINLCRSSASPKAAEAARLLLSDM 447
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.0 bits (172), Expect = 7e-13
Identities = 59/465 (12%), Positives = 123/465 (26%), Gaps = 34/465 (7%)
Query: 476 IQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREV 535
I + L E++Q I Q + +K + GGI LV LL + +Q ++
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 536 AAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATIN 595
AA L L S + + + LL+ G L + + D
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 596 QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQE 655
+ L + M+ + + A LR+L SS + ++
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL-----SSADAGRQ 178
Query: 656 YAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTT 715
+ + S+ + +A + + ++ + + R +
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238
Query: 716 NKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA 775
N A + + S L ++P + + D + ++
Sbjct: 239 N-----AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMG 293
Query: 776 EGTSEGKKNASRALHQLL----KHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVAD 831
+ + A Q L G + + + + A
Sbjct: 294 KSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGAS 353
Query: 832 ALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQD------KAIEIL 885
L ++ + + L + A +
Sbjct: 354 LLSNMSRHPLLHR------------VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401
Query: 886 SRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVGGAALL 930
L QP + SS + + + S+S + LL
Sbjct: 402 RNLMASQPQLA--KQYFSSSMLNNIINLCRSSASPKAAEAARLLL 444
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.5 bits (142), Expect = 3e-09
Identities = 51/404 (12%), Positives = 121/404 (29%), Gaps = 44/404 (10%)
Query: 437 LIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQ 496
+ ++ + + C ++ + + + GI L+ LL ++ Q+ A
Sbjct: 7 AVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAG 66
Query: 497 LIAILTEQVDDSKWAITAAGGIPPLVQL-LEAGSQKAREVAAHVLWILCCHSEDIRACVE 555
+ L + +K GI V L G+ + ++ +LW L E +
Sbjct: 67 ALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA 126
Query: 556 --------------SAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADS--------AT 593
S + P+ + L L A
Sbjct: 127 DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGL 186
Query: 594 INQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAA-----------NKGLRSL 642
I+ L+A + +S+ V + + + +S
Sbjct: 187 IDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS 246
Query: 643 VQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN---TQMVATQS 699
++ +++ G L + + + L+ + + A
Sbjct: 247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAG 306
Query: 700 ARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAA 759
A S+ + +++ + E + + +L ++ + D + + L+N+ P +
Sbjct: 307 ALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-H 365
Query: 760 EVLLEDVVSALTRVLAEGTS------EGKKNASRALHQLLKHFP 797
V+ V +TR+L T + +A + L+ P
Sbjct: 366 RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP 409
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 5e-09
Identities = 61/507 (12%), Positives = 141/507 (27%), Gaps = 69/507 (13%)
Query: 1391 IQPLISLMQSDLSIVVESAVCAFERLL--DDEQQVELVEGYDVVDLLVRLVSGTNHRLVE 1448
I + + S + D+ + ++ + + LV L+ N + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQNVQQ 62
Query: 1449 ATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARS 1508
A AL L T KL+ + I + LL +A +S+ +
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 1509 SDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLE 1568
A + L ++ P E
Sbjct: 123 ELIADALPVLADRVIIP-----------------------------FSGWCDGNSNMSRE 153
Query: 1569 SPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKIST 1628
+ T L +L + + +Q + + ++ + + +
Sbjct: 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSL-----------------MAYVQN 196
Query: 1629 SWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKM 1688
+ D + V+ + + + N
Sbjct: 197 CVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN-------AYTEKSSTGC 249
Query: 1689 LHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCEETSGRLLEA-- 1746
+ + + + L E T+ + + + I L+L+ + + T A
Sbjct: 250 FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQ 309
Query: 1747 -LFNNGRIRQMKVSKYAIA---PLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARASA 1802
L + + +S+ L Q Q+ + A L ++S+H L
Sbjct: 310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-HRVM 368
Query: 1803 SVSACRALISLLED-----QSTDEMKMVAICALQNFVMCSRTNRRAVAEAGGILVVQELL 1857
+ LL +++++ A ++N + + + + + L
Sbjct: 369 GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLC 428
Query: 1858 LST-NAEVAGQAALLTKFLFSNHTLQE 1883
S+ + + A A LL ++S+ LQ
Sbjct: 429 RSSASPKAAEAARLLLSDMWSSKELQG 455
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 8e-09
Identities = 52/472 (11%), Positives = 129/472 (27%), Gaps = 33/472 (6%)
Query: 1346 GNLLESLYKILSSNSSLELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSI 1404
G + + LSS + + A + F + I L+ L++S
Sbjct: 1 GLTIPKAVQYLSS-QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQN 59
Query: 1405 VVESAVCAFERL-LDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTP 1463
V ++A A L + + V L+ T + ++ + L+
Sbjct: 60 VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119
Query: 1464 RKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLL 1523
K +++ + P I +S ++R ++ L
Sbjct: 120 LKEELIADAL-----------PVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLR 168
Query: 1524 QPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLT 1583
+ G+ + I + + + + + + +L E+ T
Sbjct: 169 NLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228
Query: 1584 HLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKAVADAGGIFEI 1643
E+ ++ T+ + ++N E+ + + + I
Sbjct: 229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTY 288
Query: 1644 AKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVV------VLVKMLHSTLESTI 1697
++ + A L+ + ++ + + ++L S +
Sbjct: 289 LNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVV 348
Query: 1698 TVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQC-----EETSGRLLEALFN--- 1749
+ + + ++ V + LL SH E+ + N
Sbjct: 349 RSGASL--LSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA 406
Query: 1750 -NGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAALALGDLSQHEGLARA 1800
++ + S + + S A L L D+ + L
Sbjct: 407 SQPQLAKQYFSSSMLNNIINLCRSSA--SPKAAEAARLLLSDMWSSKELQGV 456
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 9e-09
Identities = 59/472 (12%), Positives = 138/472 (29%), Gaps = 33/472 (6%)
Query: 1302 GQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSS 1361
G +P V LS+ E + + + S + + G + L +L S +
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGG--ICKLVDLLRSPNQ 58
Query: 1362 LELKRNAAE-LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDDE 1420
+++ AA L ++F + I+ +SL++ + ++ + L
Sbjct: 59 -NVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117
Query: 1421 QQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDL 1480
+++ D + +L V + ++ ++ G + N
Sbjct: 118 DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVD----PEVFFNATGCLRNLSSA 173
Query: 1481 LPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALV 1540
+ + + + +A S K VE VL + S
Sbjct: 174 DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVL--HNLSYRLDAEVPTRYR 231
Query: 1541 NILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNA 1600
+ ++ T K + F + L + +A
Sbjct: 232 QLEYNARNAYTEKSSTGC-------FSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284
Query: 1601 VVPLVQLAGIG---ILNLQQTAVKALEKISTSWPKAVADAGGIFE--IAKVIIQDDPQPP 1655
+ + L G S + + I +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344
Query: 1656 HSLWESAALVLSNVLRF--NTEYYFKVPVVVLVKMLHS------TLESTITVALNALLIH 1707
+ S A +LSN+ R + ++L S E ++ A +
Sbjct: 345 SDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL 404
Query: 1708 ERTDASSAEQMTQAGVIDALLDLLRSHQCE---ETSGRLLEALFNNGRIRQM 1756
+ A+Q + +++ +++L RS E + LL ++++ ++ +
Sbjct: 405 MASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQGV 456
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (115), Expect = 5e-06
Identities = 53/458 (11%), Positives = 124/458 (27%), Gaps = 26/458 (5%)
Query: 1222 LDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLS 1281
+ +YLS + + F + + L + +L+ +L ++ + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 1282 AARALHQL-FDAENIKDSDLAGQAVPPLVDMLSAASECEL-EVALVALVKLTSGNTSKAC 1339
AA AL L F + K + V +L E+ + L L+S + K
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 1340 LLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQ 1399
L+ D L + + S + +++ + L +L
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNM-----------SREVVDPEVFFNATGCLRNLSS 172
Query: 1400 SDLSIVVESAVCAFERLLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGK 1459
+D L Q + + + ++ + +
Sbjct: 173 ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ 232
Query: 1460 DRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLF 1519
+ + + + S SDA + L
Sbjct: 233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLM 292
Query: 1520 MVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAIQQLGT 1579
+ + + + L + + + L+S + + + G
Sbjct: 293 GKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGA 352
Query: 1580 ELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILN------LQQTAVKALEKISTSWP-- 1631
LL+++ + + + +L N + +A + + S P
Sbjct: 353 SLLSNMSRHPLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQL 411
Query: 1632 -KAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSN 1668
K + + I + E+A L+LS+
Sbjct: 412 AKQYFSSSMLNNIINLCRSSASP---KAAEAARLLLSD 446
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.1 bits (115), Expect = 5e-06
Identities = 44/435 (10%), Positives = 101/435 (23%), Gaps = 25/435 (5%)
Query: 725 DVKPLIKLAKTSSIDAAETAVAALANL-LSDPDIAAEVLLEDVVSALTRVLAEGTSEGKK 783
+ ++ + + + D +V + L +L ++
Sbjct: 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 784 NASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTK 843
A+ AL L+ + ++L+ ++ + + +
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 844 QGLNFTYPPWAALAEVPSSIEP---LVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGDFL 900
+ + P A +P S P + A L L
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAG---RQT 179
Query: 901 MARSSSIGALADRIMHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVD 960
M S + + + R ++ C H ++ + L Y +
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239
Query: 961 MMKQNSSCSSLDIEVRTPRGYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRN 1020
+ SS + E + + +L L+ S
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299
Query: 1021 NNVTVMEAGALEALSDKLASYTSNPQAEFE-------------DTEGIWISALFLAILFQ 1067
A S L S + + + S L
Sbjct: 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359
Query: 1068 DANIVLSPATMRIIPALALLLRSDEVIDRFFAAQAMASL-----VCSGSKGIILAIANSG 1122
++ ++ P + LL S ++ + + + +S
Sbjct: 360 RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS 419
Query: 1123 AVAGLITLIGHIESD 1137
+ +I L S
Sbjct: 420 MLNNIINLCRSSASP 434
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (250), Expect = 1e-22
Identities = 75/462 (16%), Positives = 154/462 (33%), Gaps = 51/462 (11%)
Query: 216 GGVDIIVGLLSSDNAAAQSNAASLLARLM-LAFGDSIPTVIDSGAVKALVQLVGQNNDIS 274
V+ IV ++S+N +Q A +L+ I +I +G + V +G+ +
Sbjct: 13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 72
Query: 275 VRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRAL 334
++ +A AL ++S + + KAVV +P I + + A AL
Sbjct: 73 IQFESAWALTNIASGTSEQTKAVVDGGAIPAFI---------SLLASPHAHISEQAVWAL 123
Query: 335 ANIYGGMPALVVYLG---------ELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEP 385
NI G A + L P L+ + L + L +
Sbjct: 124 GNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL 183
Query: 386 FDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMAT 445
QI LV LL +D +++ + G + V L+ L+
Sbjct: 184 DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 243
Query: 446 ADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV 505
+ + ++ + + + + + SLL Q+ A ++ +T
Sbjct: 244 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 303
Query: 506 DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCH-SEDIRACVESAGAVPAFL 564
D + G +P LV +L K ++ AA + + + + G + +
Sbjct: 304 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 363
Query: 565 WLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMAL 624
LL + K A++ + +AA+ + L++++ +
Sbjct: 364 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC------------------- 404
Query: 625 QEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666
GL + + NE + + +++ FS
Sbjct: 405 ------------GGLDKIEALQRHENESVYKASLNLIEKYFS 434
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 74.8 bits (182), Expect = 4e-14
Identities = 67/452 (14%), Positives = 141/452 (31%), Gaps = 55/452 (12%)
Query: 125 GCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN 184
+ ++ + S + +++ A +A ++ S + + + G++P L
Sbjct: 13 WSVEDIVKGINSNNLESQLQATQAARKLLS---REKQPPIDNIIRAGLIPKFVSFL--GK 67
Query: 185 KQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLM 244
+ +Q AL N+ +A ++ G + + LL+S +A A L +
Sbjct: 68 TDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA 127
Query: 245 LAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVP 304
VI GA+ L+ L+ + ++ L S + K D
Sbjct: 128 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD--- 184
Query: 305 VLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADI 364
+ +P LV L +
Sbjct: 185 -------------------------------AVEQILPTLVRLLHHNDPEVLADSC---- 209
Query: 365 IGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFL 424
+A+ E + + LV LL + +V + + G
Sbjct: 210 -----WAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 264
Query: 425 SQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLG 484
+Q V A A V L+T ++++ +++ + + + + L+ +L
Sbjct: 265 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS 324
Query: 485 LSSEQHQEYAVQLIAILTEQVD-DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWIL 543
+ + Q+ A I T + + G I PL+ LL A K +V + +
Sbjct: 325 KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNI 384
Query: 544 C------CHSEDIRACVESAGAVPAFLWLLKS 569
+E + +E G + L +
Sbjct: 385 FQAAEKLGETEKLSIMIEECGGLDKIEALQRH 416
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 61.4 bits (147), Expect = 6e-10
Identities = 49/374 (13%), Positives = 114/374 (30%), Gaps = 12/374 (3%)
Query: 1387 ASECIQPLISLMQSDLSIVVESAVCAFERLL--DDEQQVELVEGYDVVDLLVRLVSGTNH 1444
+ ++ ++ + S+ A A +LL + + ++ + ++ V + T+
Sbjct: 11 VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70
Query: 1445 -RLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSS 1503
+ + AL + + + +V G I + LL + + +
Sbjct: 71 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130
Query: 1504 AIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALV---NILEKPQSLVTLKLTPSQVI 1560
+ R + LL L+ L + L + ++ Q++
Sbjct: 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 190
Query: 1561 EPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAV 1620
L+ L + +++L + + ++ K VVP + T
Sbjct: 191 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250
Query: 1621 KALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTE----Y 1676
+ V P ++ + A +SN+ +
Sbjct: 251 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 310
Query: 1677 YFKVPVVVLVKMLHSTLESTITVALNALL-IHERTDASSAEQMTQAGVIDALLDLLRSHQ 1735
V LV +L T A A+ + G+I+ L++LL +
Sbjct: 311 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD 370
Query: 1736 CEETSGRLLEALFN 1749
+ +L+A+ N
Sbjct: 371 -TKIIQVILDAISN 383
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.5 bits (124), Expect = 4e-07
Identities = 54/376 (14%), Positives = 124/376 (32%), Gaps = 17/376 (4%)
Query: 390 QIEDILVMLLKPHDNKLVQERVLEAMASL--YGNIFLSQWVSHAEAKKVLIGLITMA-TA 446
+EDI+ + +N Q + +A L + A + + +
Sbjct: 14 SVEDIVKGIN--SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71
Query: 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVD 506
++ +LT + +A+ I ISLL E AV + +
Sbjct: 72 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131
Query: 507 DSKWAITAAGGIPPLVQLL-----EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVP 561
+ + G I PL+ LL + L LC + +P
Sbjct: 132 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 191
Query: 562 AFLWLLKSGGPKGQDASAMALTKLIRAADSATINQL----LALLLGDSPSSKAHVIKVLG 617
+ LL P+ S A++ L + + + L+ +++ ++
Sbjct: 192 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 251
Query: 618 HVLTMALQEDLVQKGSAANKGLRSL-VQVLNSSNEENQEYAASVLADLFSMRQDICGSLA 676
+ + Q + G ++ +L + Q+ A ++++ + RQD +
Sbjct: 252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 311
Query: 677 TDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS 736
+V + +L+ ++A A+ + + + + G ++PL+ L
Sbjct: 312 NHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL--VHCGIIEPLMNLLSAK 369
Query: 737 SIDAAETAVAALANLL 752
+ + A++N+
Sbjct: 370 DTKIIQVILDAISNIF 385
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.3 bits (121), Expect = 9e-07
Identities = 77/467 (16%), Positives = 150/467 (32%), Gaps = 68/467 (14%)
Query: 1432 VDLLVRLVSGTNHRLVEATVCALIK-LGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCS 1490
V+ +V+ ++ N A K L +++ P +++AG+I + L
Sbjct: 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL--------- 65
Query: 1491 TIAELFRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLV 1550
+D + I Q + AL NI S
Sbjct: 66 ----------------GKTDCSPI-----------------QFESAWALTNIASG-TSEQ 91
Query: 1551 TLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQ-EHFQQDITTKNAVVPLVQLAG 1609
T + I +S L SP I + L ++ F+ + A+ PL+ L
Sbjct: 92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 151
Query: 1610 IGILNLQQTAVK--------ALEKISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWES 1661
+ L+ L + P A + + +++ +DP+ +
Sbjct: 152 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 211
Query: 1662 AALVLSNVLRFNTEYYFKVPVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQA 1721
+ + K V LVK+L +T +T AL A+ +++ A
Sbjct: 212 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA 271
Query: 1722 GVIDALLDLLRSHQC---EETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSE 1778
G + LL + + +E + + Q V+ + L
Sbjct: 272 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGV---LSKADF 328
Query: 1779 SGKLLAALALGDLSQHEGLARASASVS--ACRALISLLEDQSTDEMKMVAICALQNFVMC 1836
+ AA A+ + + + + V L++LL + T ++ V + A+ N
Sbjct: 329 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILDAISNIFQA 387
Query: 1837 SRTN------RRAVAEAGGILVVQELLLSTNAEVAGQAALLTKFLFS 1877
+ + E GG+ ++ L N V + L + FS
Sbjct: 388 AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 434
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.4 bits (116), Expect = 3e-06
Identities = 61/482 (12%), Positives = 131/482 (27%), Gaps = 76/482 (15%)
Query: 79 IGSHA----QAMPLFISILRSGTPLAKVNVAATLSVLCKDED--LRLKVLLGGCIPPLLS 132
IGS+ ++ + + S +++ L E ++ G IP +S
Sbjct: 4 IGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVS 63
Query: 133 LLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQG 192
L + +Q
Sbjct: 64 FLGKTD------------------------------------------------CSPIQF 75
Query: 193 FVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIP 252
AL N+ +A ++ G + + LL+S +A A L +
Sbjct: 76 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135
Query: 253 TVIDSGAVKALVQLVG----QNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIG 308
VI GA+ L+ L+ + L L A +P L+
Sbjct: 136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 195
Query: 309 AIVAPSKEC---MQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADII 365
+ E G R + G+ +V L ++ P + + I
Sbjct: 196 LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIG 255
Query: 366 GALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLS 425
+ ++ L + +E G
Sbjct: 256 NIVTGTDEQTQKVIDAGALAVFPSL--------LTNPKTNIQKEATWTMSNITAGRQDQI 307
Query: 426 QWVSHAEAKKVLIGLITMATADVREYLILSLTKLCR-REVGIWEAIGKREGIQLLISLLG 484
Q V + L+G+++ A ++ ++T V + I+ L++LL
Sbjct: 308 QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS 367
Query: 485 LSSEQHQEYAVQLIAILTEQVDDS------KWAITAAGGIPPLVQLLEAGSQKAREVAAH 538
+ + + I+ + + + I GG+ + L ++ + + +
Sbjct: 368 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLN 427
Query: 539 VL 540
++
Sbjct: 428 LI 429
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.2 bits (105), Expect = 7e-05
Identities = 57/420 (13%), Positives = 135/420 (32%), Gaps = 39/420 (9%)
Query: 1081 IPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDTPN 1140
+ + + S+ + + A QA L+ + I I +G + ++ +G +
Sbjct: 15 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC---- 70
Query: 1141 LVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVR 1200
+ E + + ++ G++ + + + +P +
Sbjct: 71 --------------SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 116
Query: 1201 -----LLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDSTEATITELFRILFSN---- 1251
L I + ++ + G +D L L++ + SN
Sbjct: 117 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 176
Query: 1252 -PDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVD 1310
+A L L+ +LH + A+ L D N + + + V P +
Sbjct: 177 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 236
Query: 1311 MLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAE 1370
L A+E + + + T + D L +L++ + K
Sbjct: 237 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWT 295
Query: 1371 LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL---DDEQQVELVE 1427
+ I G I + + L+ ++ + A A EQ V LV
Sbjct: 296 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355
Query: 1428 GYDVVDLLVRLVSGTNHRLVEATVCALIKLGK------DRTPRKLQMVKAGIIDNCLDLL 1481
+++ L+ L+S + ++++ + A+ + + + + + + G +D L
Sbjct: 356 -CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ 414
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.4 bits (103), Expect = 1e-04
Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 86 MPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKSESTDTRKA 144
+ +F S+L + + T+S + +D +V+ G +P L+ +L T+K
Sbjct: 274 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKE 333
Query: 145 AAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLC-- 202
AA A+ +SGG + + V G++ L + L+ K+ + + + A+ N+
Sbjct: 334 AAWAITNYTSGGTVEQ---IVYLVHCGIIEPLMNLLSAKDTK---IIQVILDAISNIFQA 387
Query: 203 ----GDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLAR 242
G+ + E GG+D I L +N + + +L+ +
Sbjct: 388 AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEK 431
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.6 bits (101), Expect = 2e-04
Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 8/205 (3%)
Query: 626 EDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM-RQDICGSLATDEIVNPC 684
D+ N + +V+ +NS+N E+Q A L S +Q ++ ++
Sbjct: 2 ADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKF 61
Query: 685 MRLLT-SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAET 743
+ L ++ + +SA AL ++ T + + + G + I L + +E
Sbjct: 62 VSFLGKTDCSPIQFESAWALTNIASGT---SEQTKAVVDGGAIPAFISLLASPHAHISEQ 118
Query: 744 AVAALANLLSD-PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASR--ALHQLLKHFPVGD 800
AV AL N+ D V+ + L +LA L +
Sbjct: 119 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 178
Query: 801 VLKGNAQCRFVVLTLVDSLNAMDMN 825
++ TLV L+ D
Sbjct: 179 PAPPLDAVEQILPTLVRLLHHNDPE 203
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.6 bits (93), Expect = 0.002
Identities = 48/380 (12%), Positives = 119/380 (31%), Gaps = 22/380 (5%)
Query: 1080 IIPALALLLRSDEVID-RFFAAQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESDT 1138
+IP L + +F +A A+ ++ SG+ A+ + GA+ I+L+ +
Sbjct: 57 LIPKFVSFLGKTDCSPIQFESAWALTNI-ASGTSEQTKAVVDGGAIPAFISLLASPHAHI 115
Query: 1139 PNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVA 1198
+ D+ + A + L+ + G
Sbjct: 116 SEQAVWALGNIAGDGS---------AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 166
Query: 1199 VRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSL-SPQDSTEATITELFRILFSNPDLIRY 1257
L+ + + + A L L + L P+ ++ + N +
Sbjct: 167 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMV 226
Query: 1258 EASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASE 1317
+ + + + + + + A+ +L+
Sbjct: 227 VKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT 286
Query: 1318 CELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFIM-F 1376
+ A + +T+G + ++ L+ L +LS K A +
Sbjct: 287 NIQKEATWTMSNITAGRQDQIQ--QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 344
Query: 1377 GNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL-------DDEQQVELVEGY 1429
G + I + I+PL++L+ + + +++ + A + + E+ ++E
Sbjct: 345 GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEEC 404
Query: 1430 DVVDLLVRLVSGTNHRLVEA 1449
+D + L N + +A
Sbjct: 405 GGLDKIEALQRHENESVYKA 424
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 92.1 bits (227), Expect = 2e-19
Identities = 83/459 (18%), Positives = 158/459 (34%), Gaps = 45/459 (9%)
Query: 221 IVGLLSSDNAAAQSNAASLLARLMLAFGDSIP--TVIDSGAVKALVQLVGQNNDISVRAS 278
+ L+SD+ Q +A R +L+ P VI +G V LV+ + +N ++
Sbjct: 81 MTQQLNSDDMQEQLSATVKF-RQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLE 139
Query: 279 AADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY 338
AA AL ++S + K VV AD VP+ I + S E + A AL N+
Sbjct: 140 AAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV---------KEQAIWALGNVA 190
Query: 339 GGMPAL-VVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVM 397
G L + P L ++ + A D + L
Sbjct: 191 GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 250
Query: 398 LLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATAD---VREYLIL 454
L K + + V A Y + + + ++ L+ + + + V+ +
Sbjct: 251 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 310
Query: 455 SLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITA 514
++ + + + + L LL E ++ A I+ +T + A+
Sbjct: 311 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID 370
Query: 515 AGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVE---SAGAVPAFLWLLKSGG 571
A IPPLV+LLE K ++ A + + S G + LL+
Sbjct: 371 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD 430
Query: 572 PKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631
+ + + AL +++ ++ G + + A I+ G
Sbjct: 431 NRIIEVTLDALENILKMGEA------DKEARGLNINENADFIEKAG-------------- 470
Query: 632 GSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQD 670
G+ + + N++ E A ++ F +D
Sbjct: 471 ------GMEKIFNCQQNENDKIYEKAYKIIETYFGEEED 503
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.0 bits (193), Expect = 2e-15
Identities = 53/354 (14%), Positives = 120/354 (33%), Gaps = 12/354 (3%)
Query: 447 DVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVD 506
++ +LT + + + + + L I LL S + +E A+ + +
Sbjct: 135 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 194
Query: 507 DSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWL 566
D + + + P++ L + A L LC + + A+P L
Sbjct: 195 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 254
Query: 567 LKSGGPKGQDASAMALTKLIRAADSATINQLLALLLG-----DSPSSKAHVIKVLGHVLT 621
+ S + + A++ L A + + S S L V
Sbjct: 255 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 314
Query: 622 MALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIV 681
+ DL + L +L +L+S E ++ A ++++ + + ++ ++
Sbjct: 315 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 374
Query: 682 NPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAA 741
P ++LL ++ A+ S + +++G +KPL L + +
Sbjct: 375 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 434
Query: 742 ETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795
E + AL N+L + E ++ + G E + ++
Sbjct: 435 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGME-------KIFNCQQN 481
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.0 bits (180), Expect = 9e-14
Identities = 71/443 (16%), Positives = 147/443 (33%), Gaps = 29/443 (6%)
Query: 114 DEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVV 173
D + L +P + L S+ + +A ++ S + + + + GVV
Sbjct: 65 SADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILS---REHRPPIDVVIQAGVV 121
Query: 174 PTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQ 233
P L + + + Q ++Q AL N+ + ++A V + + LL + + +
Sbjct: 122 PRLVEFM--RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 179
Query: 234 SNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKA 293
A L + D V+ A++ ++ L +N S+ +A L L
Sbjct: 180 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRGKKPQ 238
Query: 294 KKAVVAADGVPVLIGAIVAPSKECMQ--GQRGQALQGHATRALANIYGGMPALVVYLGEL 351
V + +P L I + E + L A+ + +
Sbjct: 239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 298
Query: 352 SQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERV 411
+S + P +G + + Q L +LL + +E
Sbjct: 299 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLP-------ALRLLLSSPKENIKKEAC 351
Query: 412 LEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVRE---YLILSLTKLCRREVGIWE 468
GN Q V A L+ L+ +A ++ + I + + + I
Sbjct: 352 WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 411
Query: 469 AIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWA-----------ITAAGG 517
+ + I+ L LL ++ + E + + + + + K A I AGG
Sbjct: 412 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGG 471
Query: 518 IPPLVQLLEAGSQKAREVAAHVL 540
+ + + + K E A ++
Sbjct: 472 MEKIFNCQQNENDKIYEKAYKII 494
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.2 bits (139), Expect = 6e-09
Identities = 70/380 (18%), Positives = 139/380 (36%), Gaps = 16/380 (4%)
Query: 1257 YEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENIKDSDLAGQA--VPPLVDMLSA 1314
Y L Q+ L+ +LSA Q+ E+ D+ QA VP LV+ +
Sbjct: 71 YSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 130
Query: 1315 ASECEL-EVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCF 1373
L A AL + SG +++ ++ +D + + ++L + S ++ L
Sbjct: 131 NQPEMLQLEAAWALTNIASGTSAQTKVV--VDADAVPLFIQLLYTGSVEVKEQAIWALGN 188
Query: 1374 IMFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLL-DDEQQVELVEGYDVV 1432
+ + + ++P++ L S+ ++ +A L + Q + +
Sbjct: 189 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 248
Query: 1433 DLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTI 1492
L +L+ + + C I D +Q V I L L S L T
Sbjct: 249 PTLAKLIYSMDTETLVD-ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 307
Query: 1493 AEL--FRILTNSSAIARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLV 1550
A I+T + + A ++ L ++L P ++ + A + NI +
Sbjct: 308 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI--KKEACWTISNITAGNTEQI 365
Query: 1551 TLKLTPSQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQQDITTK----NAVVPLVQ 1606
+ + +I PL+ LE + ++ +++ + + DI + PL
Sbjct: 366 Q-AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD 424
Query: 1607 LAGIGILNLQQTAVKALEKI 1626
L I + + + ALE I
Sbjct: 425 LLEIADNRIIEVTLDALENI 444
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.9 bits (128), Expect = 2e-07
Identities = 54/372 (14%), Positives = 102/372 (27%), Gaps = 13/372 (3%)
Query: 1388 SECIQPLISLMQSDLSIVVESAVCAFERLL--DDEQQVELVEGYDVVDLLVRLV-SGTNH 1444
+ + + + SD SA F ++L + +++V VV LV +
Sbjct: 75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE 134
Query: 1445 RLVEATVCALIKLGKDRTPRKLQMVKAGIIDNCLDLLPVAPSALCSTIAELFRILTNSSA 1504
L AL + + + +V A + + LL + + S
Sbjct: 135 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDST 194
Query: 1505 IARSSDAAKIVEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLL 1564
R + L +A L N+ + + SQ + L
Sbjct: 195 DYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLA 252
Query: 1565 SFLESPSHAIQQLGTELLTHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAVKALE 1624
+ S +++L + + L QT
Sbjct: 253 KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 312
Query: 1625 KISTSWPKAVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKV---- 1680
+ + + P ++ + A +SN+ NTE V
Sbjct: 313 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN 372
Query: 1681 ---PVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDALLDLLRSHQCE 1737
P+V L+++ + A++ + G I L DLL
Sbjct: 373 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD-N 431
Query: 1738 ETSGRLLEALFN 1749
L+AL N
Sbjct: 432 RIIEVTLDALEN 443
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.0 bits (123), Expect = 6e-07
Identities = 61/349 (17%), Positives = 123/349 (35%), Gaps = 8/349 (2%)
Query: 1178 IPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLSLSPQDST 1237
+P LV+ +R A LT I G+ ++ +A + + L +
Sbjct: 121 VPRLVEFMRE-NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 179
Query: 1238 EATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL-FDAENIK 1296
E I L + + D Y +++ ++ + + +A L L +
Sbjct: 180 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP 239
Query: 1297 DSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKIL 1356
D + QA+P L ++ + L A A+ L+ G ID + + L ++L
Sbjct: 240 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQ--AVIDVRIPKRLVELL 297
Query: 1357 SSNSSLELKRNAAELCFIMFGNAKIIANPIASECIQPLISLMQS-DLSIVVESAVCAFER 1415
S S+L + I+ GN I + + L L+ S +I E+
Sbjct: 298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357
Query: 1416 LLDDEQQVELVEGYDVVDLLVRLVSGTNHRLVEATVCALIKLGKDRTPRKLQ---MVKAG 1472
+ +Q++ V +++ LV+L+ ++ + A+ R +V G
Sbjct: 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG 417
Query: 1473 IIDNCLDLLPVAPSALCSTIAELFRILTNSSAIARSSDAAKIVEPLFMV 1521
I DLL +A + + + + + + I E +
Sbjct: 418 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFI 466
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.7 bits (117), Expect = 3e-06
Identities = 70/385 (18%), Positives = 135/385 (35%), Gaps = 25/385 (6%)
Query: 1515 VEPLFMVLLQPDFSLWGQHSALQALVNILEKPQSLVTLKLTPSQVIEPLLSFLESPSHAI 1574
V P + ++ + Q A AL NI + + + + + + L + S +
Sbjct: 120 VVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV-VVDADAVPLFIQLLYTGSVEV 178
Query: 1575 QQLGTELLTHLLAQEHFQQDIT-TKNAVVPLVQLAGIGILNLQQTAVKALEKISTSWPKA 1633
++ L ++ +D NA+ P++ L +L +TA L + K
Sbjct: 179 KEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR-GKKP 237
Query: 1634 VADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVLRFNTEYYFKVPVVVLVKMLHSTL 1693
D + + + + A +S + E V V + K L L
Sbjct: 238 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELL 297
Query: 1694 ESTITVALNALLIHERTDASSAEQMTQ----AGVIDALLDLLRSHQ---CEETSGRLLEA 1746
T+ L + + TQ AGV+ AL LL S + +E +
Sbjct: 298 SHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNI 357
Query: 1747 LFNNGRIRQMKVSKYAIAPLSQYLL--DPQTRSESGKLLAALALGDLSQHEGLARASASV 1804
N Q + I PL + L + +T+ E+ ++ + G L + + + R S
Sbjct: 358 TAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDII-RYLVSQ 416
Query: 1805 SACRALISLLEDQSTDEMKMVAICALQNFV-----------MCSRTNRRAVAEAGGILVV 1853
+ L LLE + V + AL+N + + N + +AGG+ +
Sbjct: 417 GCIKPLCDLLEIADN-RIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKI 475
Query: 1854 QELLLSTNAEVAGQAALLTKFLFSN 1878
+ N ++ +A + + F
Sbjct: 476 FNCQQNENDKIYEKAYKIIETYFGE 500
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.9 bits (115), Expect = 5e-06
Identities = 57/416 (13%), Positives = 135/416 (32%), Gaps = 49/416 (11%)
Query: 1080 IIPALALLLRSDEVIDRFFAAQAMASLVCSGSKGIILAIANSGAVAGLITL--------- 1130
+P + L SD++ ++ A ++ + I + +G V L+
Sbjct: 77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEML 136
Query: 1131 -------IGHIESDTPNLVALSEEFFLVRYPDEVVLEKLFEIEDVRVGSTARKSIPLLVD 1183
+ +I S T + + V +++ E+++ + + +
Sbjct: 137 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 196
Query: 1184 ILRPIPDRPGAPPV-------------AVRLLTQIVDGSDTNKLIMAEAGGLDALTKYLS 1230
+ P + A L+ + G + L L K +
Sbjct: 197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY 256
Query: 1231 LSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQL- 1289
++ + + + I+ + +L+ +L S + A RA+ +
Sbjct: 257 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 316
Query: 1290 FDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLL 1349
+ + +P L +LS+ E + A + +T+GNT + + D + L
Sbjct: 317 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN---L 373
Query: 1350 ESLYKILSSNSSLELKRNAAE----LCFIMFGNAKIIANPIASECIQPLISLMQSDLSIV 1405
L + + K+ A II ++ CI+PL L++ + +
Sbjct: 374 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 433
Query: 1406 VESAVCAFERLL------------DDEQQVELVEGYDVVDLLVRLVSGTNHRLVEA 1449
+E + A E +L + + + +E ++ + N ++ E
Sbjct: 434 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEK 489
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.2 bits (100), Expect = 3e-04
Identities = 67/464 (14%), Positives = 129/464 (27%), Gaps = 59/464 (12%)
Query: 1557 SQVIEPLLSFLESPSHAIQQLGTELLTHLLAQEHFQ--QDITTKNAVVPLVQLAGIGIL- 1613
Q + + L S Q T +L++EH + V LV+
Sbjct: 75 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPE 134
Query: 1614 NLQQTAVKALEKISTSWPK---AVADAGGIFEIAKVIIQDDPQPPHSLWESAALVLSNVL 1670
LQ A AL I++ V DA + +++ + E A L NV
Sbjct: 135 MLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS----VEVKEQAIWALGNVA 190
Query: 1671 RFNTEY----YFKVPVVVLVKMLHSTLESTITVALNALLIHERTDASSAEQMTQAGVIDA 1726
+T+Y + ++ + +S S I A L R + + +
Sbjct: 191 GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 250
Query: 1727 LLDLLRSHQCEETSGRLLEALFNNGRIRQMKVSKYAIAPLSQYLLDPQTRSESGKLLAAL 1786
L L+ S E + + ++ + + + + S + A
Sbjct: 251 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR 310
Query: 1787 ALGDLSQHEGLARASASVSACRALISLLEDQSTDEMKMVAICALQNFVMCSRTNRRAVAE 1846
A+G++ L + + LL + +K A + N + +AV +
Sbjct: 311 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID 370
Query: 1847 AGGILVVQELLLSTNAEVAGQAALLTKFLFSNHTLQEYVSNELIRSLTAALERELWSTAT 1906
A I + +LL + +A S + + L+
Sbjct: 371 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQG------------- 417
Query: 1907 INEEVLRTLHVIFMNFPKLHTSEAATLCIPHLVGALKSGSEAAQGSVLDTLCLLRNSWST 1966
CI L L+ LD L +
Sbjct: 418 ---------------------------CIKPLCDLLEIADNRIIEVTLDALENILKMGEA 450
Query: 1967 MPIDVAKSQAMIA-----AEAIPILQMLMKTCPPSFHERADSLL 2005
+ A A + + + +E+A ++
Sbjct: 451 DKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 494
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.1 bits (92), Expect = 0.003
Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 6/186 (3%)
Query: 633 SAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNT 692
S + L + Q LNS + + Q A + S + V P +
Sbjct: 72 SQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN 131
Query: 693 Q--MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALAN 750
Q M+ ++A AL ++ T + + V I+L T S++ E A+ AL N
Sbjct: 132 QPEMLQLEAAWALTNIASGT---SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGN 188
Query: 751 LL-SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCR 809
+ D VL + + + + + A+ L L + +Q
Sbjct: 189 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 248
Query: 810 FVVLTL 815
+ L
Sbjct: 249 PTLAKL 254
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (135), Expect = 7e-09
Identities = 33/216 (15%), Positives = 74/216 (34%), Gaps = 8/216 (3%)
Query: 87 PLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLS-LLKSESTDTRKAA 145
P ++ + L+ LC++ D + L+ L++ + R A
Sbjct: 20 PTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRA 79
Query: 146 AEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205
A+ + S + + + G + L L+ + V+ A+ L ++
Sbjct: 80 AQLIGTCS----QNVAAIQEQVLGLGALRKLLRLLDRDA--CDTVRVKALFAISCLVREQ 133
Query: 206 DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQ 265
+ L G +++ + + +A LL L++ + T+ G V+ LV
Sbjct: 134 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 193
Query: 266 LVGQNNDISVRASAADALEALSSKSIKAKKAVVAAD 301
LV + AL +L + + + +
Sbjct: 194 LV-RTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 228
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 4e-07
Identities = 40/224 (17%), Positives = 80/224 (35%), Gaps = 38/224 (16%)
Query: 486 SSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLV-QLLEAGSQKAREVAAHVLWILC 544
+ +Q +E A++L+A L E +D + G+ LV + LEAG+ R AA ++
Sbjct: 29 ADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCS 87
Query: 545 CHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGD 604
+ I+ V GA+ L LL D
Sbjct: 88 QNVAAIQEQVLGLGALRKLLRLL------------------------------------D 111
Query: 605 SPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664
+ +K L + + +++ G L++ + ++ + +A +L +L
Sbjct: 112 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL 171
Query: 665 FSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708
+ G+L + +V + L+ + AL +L
Sbjct: 172 LVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 215
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 9e-05
Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 17/218 (7%)
Query: 197 ALRNLCGDKDGYWRATLEAGGVDIIVG-LLSSDNAAAQSNAASLLARLMLAFGDSIPTVI 255
L +LC + D + G+ ++VG L + A + AA L+ V+
Sbjct: 40 LLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL 98
Query: 256 DSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSK 315
GA++ L++L+ ++ +VR A A+ L + + DG VL+ A+ +
Sbjct: 99 GLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ 158
Query: 316 ECMQGQRGQAL----QGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYA 371
+ + G + LV + ++ V + +L
Sbjct: 159 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVR--TEHSPFHEHVLGALCSLV-- 214
Query: 372 LMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQE 409
+ + R+ E L LL+ L Q
Sbjct: 215 -------TDFPQGVRECREPELGLEELLRHRCQLLQQH 245
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.2 bits (126), Expect = 4e-07
Identities = 139/1104 (12%), Positives = 283/1104 (25%), Gaps = 67/1104 (6%)
Query: 269 QNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQG 328
++D R A + L K V +++ + + E +Q
Sbjct: 13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGE---------VQN 63
Query: 329 HATRALANIYG-----GMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDD 383
A + L + + +V L S + IG + SG
Sbjct: 64 LAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSAL 123
Query: 384 EPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM 443
++I L + ++ VQ L+ MA + H L+ +T
Sbjct: 124 AANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183
Query: 444 ATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTE 503
VR+ I++L L + LL L S +Q IA ++
Sbjct: 184 PRLAVRKRTIIALGHLVM---SCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 240
Query: 504 QVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLW-ILCCHSEDIRACVESAGAVPA 562
Q IP +V+ + RE + +++ V + +
Sbjct: 241 QAGHRIGEYLEKI-IPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTI--INI 297
Query: 563 FLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTM 622
L L P + A +Q D V + L
Sbjct: 298 CLKYLTYD-PNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA 356
Query: 623 ALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVN 682
+ +L+ E + L + + L +
Sbjct: 357 VVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDA-- 414
Query: 683 PCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAE 742
M + M+ +Q + AL + K K+ + L+ + +
Sbjct: 415 --MEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFN-MLTELVNVLPGALTQHIP 471
Query: 743 TAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVL 802
V + L+D ++ + ++ L+ ++ + H ++ V
Sbjct: 472 VLVPGIIFSLNDKSSSSNLKIDA--------LSCLYVILCNHSPQVFHPHVQALVPPVVA 523
Query: 803 KGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSS 862
+ + + + K T A
Sbjct: 524 CVGDPFYKITSEALLVTQQLVKVIRPLDQPSSF-DATPYIKDLFTCTIKRLKAADIDQEV 582
Query: 863 IEPLVCCLAEGPPPLQDKAIEILSRLCGDQPAVLGD---FLMARSSSIGALADRIMHSSS 919
E + C+ + L D L L + L + +
Sbjct: 583 KERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLR 642
Query: 920 LEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPR 979
+ G L K + + L L Y+ + + +
Sbjct: 643 PVLGEGVPILASFLRKNQRALKLGTLSALDILIK-NYSDSLTAAMIDAVLDELPPLISES 701
Query: 980 GYMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLA 1039
+ L ++ +L + +R+ + A+ L
Sbjct: 702 DMHVSQMAISFLTTLAKVYPSSLS-KISGSILNELIGLVRSPLLQGGALSAMLDFFQALV 760
Query: 1040 SYTSNPQAEFEDTEGIWISALFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFA 1099
T + L + + + + ++A + +
Sbjct: 761 V---------TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG 811
Query: 1100 AQAMASLVCSGSKGIILAIANSGAVAGLITLIGHIE-SDTPNLVALSEEFFLVRYPDEVV 1158
+ + A+ L + HI+ S L ++ E F P E V
Sbjct: 812 PAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAF--SSPSEEV 869
Query: 1159 LEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLIMAE 1218
+ +P ++ + P R +++ + +
Sbjct: 870 KSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN- 928
Query: 1219 AGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGA 1278
L K+ + + + L ++ +P+ + L +L L GS A
Sbjct: 929 --IWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL--------LPRLKGYLISGSSYA 978
Query: 1279 RLSAARALHQLFDAENIKDSDLAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKA 1338
R S A+ L + + L + +L V VALV S +K
Sbjct: 979 RSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLE---DPDLNVRRVALVTFNSAAHNKP 1035
Query: 1339 CLLTDIDGNLLESLYKILSSNSSL 1362
L+ D+ +L LY L
Sbjct: 1036 SLIRDLLDTVLPHLYNETKVRKEL 1059
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 3e-06
Identities = 96/719 (13%), Positives = 196/719 (27%), Gaps = 56/719 (7%)
Query: 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQ 186
I LL + S D R A L L D + + VV + L KN +
Sbjct: 5 ISNLLEKMTSSDKDFRFMATNDLMTE----LQKDSIKLDDDSERKVVKMILKLLEDKNGE 60
Query: 187 DNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARL--- 243
VQ L L Y T+ VD + + SD + ++ L +
Sbjct: 61 ---VQNLAVKCLGPLVSKVKEYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGE 113
Query: 244 --MLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAAD 301
+ G ++ + L + + D+SV+ A D + + S+ +
Sbjct: 114 LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL-----LVN 168
Query: 302 GVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGG------MPALVVYLGELSQSP 355
P ++ ++ R + + A L G + L+ L + + S
Sbjct: 169 FHPSILTCLLPQLTSPRLAVRKRTII--ALGHLVMSCGNIVFVDLIEHLLSELSK-NDSM 225
Query: 356 RLAAPVADIIGALAYAL----------MVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405
I A++ ++ + + + R+ K
Sbjct: 226 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 285
Query: 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVG 465
V V + + ++ + + + D + +
Sbjct: 286 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWK 345
Query: 466 IWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL 525
+ +R + L +++ E E+ + L + + + + A + LL
Sbjct: 346 V-----RRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKAD-VFHAYLSLL 399
Query: 526 EAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL 585
+ + + + V A +K K + LT+L
Sbjct: 400 KQTRPVQSWLCDPDAMEQ-GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTEL 458
Query: 586 IRAADSATIN------QLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639
+ A + L D SS I L + + +
Sbjct: 459 VNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALV 518
Query: 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD--EIVNPCMRLLTSNTQMVAT 697
+V + + A V L + + + + D + +
Sbjct: 519 PPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADI 578
Query: 698 QSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDP-D 756
A+S + + ++ I L + + T V AL + P
Sbjct: 579 DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLK 638
Query: 757 IAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTL 815
I +L + V L L + K AL L+K++ + L
Sbjct: 639 IDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL 697
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.7 bits (109), Expect = 4e-05
Identities = 16/75 (21%), Positives = 27/75 (36%)
Query: 75 ARLLIGSHAQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLL 134
+L + +P L SG+ A+ +V + D + LL CI L L
Sbjct: 953 GKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTL 1012
Query: 135 KSESTDTRKAAAEAL 149
+ + R+ A
Sbjct: 1013 EDPDLNVRRVALVTF 1027
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Score = 39.7 bits (92), Expect = 0.002
Identities = 32/166 (19%), Positives = 59/166 (35%), Gaps = 9/166 (5%)
Query: 127 IPPLLSLLKSESTDTRKAAAEAL-YEVSSGGLSDDHVGMKIFVTE-GVVPTLWDQLNPKN 184
+ L L++ R+A A L E S + D+ ++I V + + L ++
Sbjct: 68 VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRD 127
Query: 185 --KQDNVVQGFVTGALRNLCGDKDG-YWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLA 241
+ VVQ G L D+D + + + + + + AS L
Sbjct: 128 YLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR 187
Query: 242 R--LMLAFGDSIPTVIDSGAVKALVQLVGQ--NNDISVRASAADAL 283
L+ D TV + A ++ + + D VR + A L
Sbjct: 188 GDDLLELLHDPDWTVRLAAVEHASLEALRELDEPDPEVRLAIAGRL 233
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2054 | |||
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.95 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.94 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.94 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.92 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.9 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.88 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.78 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.77 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.61 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.58 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.56 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.52 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.35 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.3 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.26 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.22 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.16 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.13 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.11 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.01 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.0 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.75 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.38 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.34 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.28 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.71 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.71 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.2 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 97.1 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.72 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 95.81 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 93.92 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 92.5 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 91.34 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 90.99 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 88.31 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 87.28 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 87.02 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 85.78 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 83.08 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 81.92 |
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-33 Score=356.55 Aligned_cols=506 Identities=20% Similarity=0.204 Sum_probs=410.7
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhc-CChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCC
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLG-GCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSDD 160 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~-GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~ 160 (2054)
.++||.|+++|++++..++..|+.+|..++..+..+..+... |+++.|+++|.+ +++++++.|+.+|.+++. +
T Consensus 16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-----~ 90 (529)
T d1jdha_ 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-----H 90 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-----S
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-----C
Confidence 478999999999999999999999999999888888877765 789999999987 689999999999999995 5
Q ss_pred hhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHH
Q 000145 161 HVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLL 240 (2054)
Q Consensus 161 ~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL 240 (2054)
..++..+++.|++|.|+++|.+++ +.++..++++|.|++.+.+..+..+.+.|+++.|+.+|.+++++++..++.+|
T Consensus 91 ~~~~~~i~~~g~i~~Li~lL~~~~---~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L 167 (529)
T d1jdha_ 91 REGLLAIFKSGGIPALVKMLGSPV---DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 167 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred chhHHHHHHCCCHHHHHHHhCCCC---HHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHH
Confidence 678899999999999999997654 67999999999999999988888899999999999999999999999999999
Q ss_pred HHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhh
Q 000145 241 ARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQG 320 (2054)
Q Consensus 241 ~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~ 320 (2054)
.+++..+...+..+.+.|+++.++.++.+.+...++..+..++.+++. +++.++.+.+.|+++.|+.++.+++.+
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~-~~~~~~~~~~~g~~~~L~~ll~~~~~~---- 242 (529)
T d1jdha_ 168 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQR---- 242 (529)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHH----
T ss_pred HHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhc-cccccchhhhhhhhhhHHHHhcccchh----
Confidence 999977777777788999999999999866777889999999999998 488899999999999999988776643
Q ss_pred hhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcC
Q 000145 321 QRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLK 400 (2054)
Q Consensus 321 ~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk 400 (2054)
++.++..++.+++.
T Consensus 243 -----~~~~a~~~l~~ls~------------------------------------------------------------- 256 (529)
T d1jdha_ 243 -----LVQNCLWTLRNLSD------------------------------------------------------------- 256 (529)
T ss_dssp -----HHHHHHHHHHHHHT-------------------------------------------------------------
T ss_pred -----hhhhhhhHHHhccc-------------------------------------------------------------
Confidence 34455555544431
Q ss_pred CCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHH
Q 000145 401 PHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLI 480 (2054)
Q Consensus 401 ~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV 480 (2054)
... ......++++.|+.++.+++.+++..++.+|.+++.+++.++..+.+.++++.++
T Consensus 257 --------------------~~~--~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li 314 (529)
T d1jdha_ 257 --------------------AAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314 (529)
T ss_dssp --------------------TCT--TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHH
T ss_pred --------------------ccc--chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHH
Confidence 000 0011234567788888888899999999999999988888888999999999999
Q ss_pred hhhc--CCChhhhHHHHHHHHHHhhhccc---hhhHHHhhCCCchHhhhhhcC-CHHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 481 SLLG--LSSEQHQEYAVQLIAILTEQVDD---SKWAITAAGGIPPLVQLLEAG-SQKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 481 ~LL~--s~d~~Vr~~Aa~aL~nLs~~s~e---~r~~I~~aGaIp~LV~LL~s~-s~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
+++. ++++.+++.++.+|++++..... .+..+...++++.|+.++..+ +..++..+++++++++.+ +..+..+
T Consensus 315 ~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l 393 (529)
T d1jdha_ 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPL 393 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHH
T ss_pred HHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhh
Confidence 9774 45677899999999999864332 455667889999999999876 567888999999999875 5677888
Q ss_pred HHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhh
Q 000145 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSA 634 (2054)
Q Consensus 555 ~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~ 634 (2054)
.+.|+++.|++++.+.+.+++..++.+.......... ..+++...+..++..++. .. ..+..+.
T Consensus 394 ~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~al~~la~---~~-~~r~~~~ 457 (529)
T d1jdha_ 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV------------RMEEIVEGCTGALHILAR---DV-HNRIVIR 457 (529)
T ss_dssp HHTTHHHHHHHHHHHHHHHHC-----------CBTTB------------CHHHHHHHHHHHHHHHTT---SH-HHHHHHH
T ss_pred hhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhccc------------chHHHHHHHHHHHHHHcc---CH-HHHHHHH
Confidence 8999999999999988888877777654443221110 011233344455555432 22 2234466
Q ss_pred cccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhh
Q 000145 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALS 707 (2054)
Q Consensus 635 ~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs 707 (2054)
+.|+++.|+.++++++++++..++.+|.+|+. +++.++.+.+.|++++|+++++++++.++..|+.+|.+|+
T Consensus 458 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls 529 (529)
T d1jdha_ 458 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhc-ChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999987 7889999999999999999999999999999999999874
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-33 Score=349.74 Aligned_cols=489 Identities=19% Similarity=0.212 Sum_probs=400.8
Q ss_pred hcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHH-cCcHHHHHHhhCCCCCCChhHHHHHHHHHHHH
Q 000145 123 LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVT-EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNL 201 (2054)
Q Consensus 123 ~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~-aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL 201 (2054)
..++||.|+++|+++|..++..|+.+|.+++. ....+..++. .|+|+.|+++|...+ +..+++.+.++|.++
T Consensus 15 ~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~-----~~~~~~~~~~~~~~v~~l~~~L~~~~--~~~~~~~a~~~L~~l 87 (529)
T d1jdha_ 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-----KEASRHAIMRSPQMVSAIVRTMQNTN--DVETARCTAGTLHNL 87 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-----SHHHHHHHHTCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----ccHHHHHHHHhhhHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999996 3445555655 478999999997654 356899999999999
Q ss_pred hcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHH
Q 000145 202 CGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAAD 281 (2054)
Q Consensus 202 ~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~ 281 (2054)
+.+++.+ ..+.+.||++.|+.+|.+++++++..|+++|++++..++..+..+.+.|+++.|+.+++ ..+..++..++.
T Consensus 88 ~~~~~~~-~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~~~~~a~~ 165 (529)
T d1jdha_ 88 SHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-KTNVKFLAITTD 165 (529)
T ss_dssp TTSHHHH-HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGG-CCCHHHHHHHHH
T ss_pred hCCchhH-HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHH-ccChHHHHHHHH
Confidence 9866655 77889999999999999999999999999999999888888888889999999999998 467789999999
Q ss_pred HHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhH
Q 000145 282 ALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPV 361 (2054)
Q Consensus 282 aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~i 361 (2054)
+|.+++..+.+.+..+.+.|+++.|+.++..+
T Consensus 166 ~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~------------------------------------------------ 197 (529)
T d1jdha_ 166 CLQILAYGNQESKLIILASGGPQALVNIMRTY------------------------------------------------ 197 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC------------------------------------------------
T ss_pred HHHHHhhhhhHHHHHHHhcccchHHHHHHHhh------------------------------------------------
Confidence 99999886566665555555555554433211
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHh
Q 000145 362 ADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLI 441 (2054)
Q Consensus 362 A~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL 441 (2054)
T Consensus 198 -------------------------------------------------------------------------------- 197 (529)
T d1jdha_ 198 -------------------------------------------------------------------------------- 197 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchH
Q 000145 442 TMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPL 521 (2054)
Q Consensus 442 ~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~L 521 (2054)
..+..+..++.++.+++.+ ++++..+.+.|+++.|+.++.+++..++..+++++.+++.... ......|+++.|
T Consensus 198 --~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~---~~~~~~~~i~~L 271 (529)
T d1jdha_ 198 --TYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTL 271 (529)
T ss_dssp --CCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT---TCSCCHHHHHHH
T ss_pred --hhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhcccccc---chhhhhhcchhh
Confidence 1123344555666666654 5677778888999999999999999999999999999976322 223345789999
Q ss_pred hhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhc--cCChhHHHHHHHHHHHHHHhhchhhHHHHHH
Q 000145 522 VQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK--SGGPKGQDASAMALTKLIRAADSATINQLLA 599 (2054)
Q Consensus 522 V~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLk--S~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~ 599 (2054)
+++++++++.++..++++|++|+.+++..+..+.+.++++.|+.++. ++.+++++.++++|.+++....
T Consensus 272 v~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~--------- 342 (529)
T d1jdha_ 272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ--------- 342 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST---------
T ss_pred hhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhh---------
Confidence 99999999999999999999999988899999999999999998774 4667889999999999874421
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccC-CHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000145 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSS-NEENQEYAASVLADLFSMRQDICGSLATD 678 (2054)
Q Consensus 600 LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~-s~evre~Aa~ALanLas~~~e~r~~Iv~~ 678 (2054)
. .+..+..+...++++.|+.+++++ +...+..+++++.+++. +++.+..+.+.
T Consensus 343 -------~------------------~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~-~~~~~~~l~~~ 396 (529)
T d1jdha_ 343 -------E------------------AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQ 396 (529)
T ss_dssp -------T------------------HHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHT
T ss_pred -------c------------------chhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcch-hhhhhhhhhhc
Confidence 0 111222344567899999999876 46788889999999988 68889999999
Q ss_pred CCHHHHHHHhccCCH----------------------HHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcC
Q 000145 679 EIVNPCMRLLTSNTQ----------------------MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS 736 (2054)
Q Consensus 679 g~V~~Lv~LL~dgs~----------------------~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~ 736 (2054)
|+++.|++++.+++. .+...+..+|+.++. .. ..|..+.+.|++++|+++|.++
T Consensus 397 g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~--~~r~~~~~~~~i~~Lv~lL~~~ 472 (529)
T d1jdha_ 397 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DV--HNRIVIRGLNTIPLFVQLLYSP 472 (529)
T ss_dssp THHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SH--HHHHHHHHTTCHHHHHHGGGCS
T ss_pred ccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CH--HHHHHHHHCCCHHHHHHHhCCC
Confidence 999999999975443 455667778888875 22 5777888999999999999999
Q ss_pred CHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q 000145 737 SIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLL 793 (2054)
Q Consensus 737 d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~ 793 (2054)
+++++..|+.+|++|+.+++.++.+...|++++|++++.++++.+|+.|+.+|.+|.
T Consensus 473 ~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~ls 529 (529)
T d1jdha_ 473 IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999873
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=5.2e-26 Score=276.97 Aligned_cols=414 Identities=16% Similarity=0.165 Sum_probs=335.5
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhcccCcc-chhhhhccccHHHHHhhhcCC-ChhhhHHHHHHHHHHhhhccchh
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCRREVG-IWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e-~r~~Ive~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
..++.++..+.+++++.|..|+.+++++...... ....+.+.|++|.|+++++.. ++.+|..++++|++++.++++.+
T Consensus 13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~ 92 (434)
T d1q1sc_ 13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 92 (434)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhh
Confidence 4688899999999999999999999988654222 245788889999999999754 56799999999999998777888
Q ss_pred hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCCh-----hHHHHHHHHHHH
Q 000145 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGP-----KGQDASAMALTK 584 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~-----evq~~AA~AL~n 584 (2054)
..+.+.|+++.|+.+|.++++++++.|+++|+|++.+++..+..+.+.|+++.|+.++...+. .....+++++.+
T Consensus 93 ~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~ 172 (434)
T d1q1sc_ 93 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 172 (434)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred hHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999888899999999999999999877553 234455555655
Q ss_pred HHHhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHH
Q 000145 585 LIRAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADL 664 (2054)
Q Consensus 585 Ls~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanL 664 (2054)
++.... .. ... ....+.++.|+.++++++++++..++++|.++
T Consensus 173 ~~~~~~---------------~~----------------~~~------~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l 215 (434)
T d1q1sc_ 173 LCRNKN---------------PA----------------PPL------DAVEQILPTLVRLLHHNDPEVLADSCWAISYL 215 (434)
T ss_dssp HTCCCT---------------TC----------------CCH------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred Hhhccc---------------cc----------------chh------hhhhhHHHHHHHHHhccccchhhhHHhhhccc
Confidence 543210 00 000 01234688899999999999999999999999
Q ss_pred hhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHH
Q 000145 665 FSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETA 744 (2054)
Q Consensus 665 as~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~A 744 (2054)
+..+++....+...|+++.|+++++++++.++..++++|.+++... +..+..+.+.|+++.|+.++.+.+++++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~---~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a 292 (434)
T d1q1sc_ 216 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT---DEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 292 (434)
T ss_dssp TSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred chhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhh---hHHHHHHHhccccchHHHhhcccchhhhHHH
Confidence 9877777888889999999999999999999999999999998632 2567788899999999999999999999999
Q ss_pred HHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCC
Q 000145 745 VAALANLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMD 823 (2054)
Q Consensus 745 l~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~ 823 (2054)
+++|+|++. +++....+.+.|+++.++.++.+++++++..|++++.|++.... ......+.+.|+++.|++++...+
T Consensus 293 ~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~--~~~~~~l~~~~~i~~L~~ll~~~d 370 (434)
T d1q1sc_ 293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGT--VEQIVYLVHCGIIEPLMNLLSAKD 370 (434)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC--HHHHHHHHHTTCHHHHHHHTTSSC
T ss_pred HHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCcHHHHHHHhcCCC
Confidence 999999987 56667778899999999999999999999999999999998642 333445666789999999997543
Q ss_pred CCchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhc
Q 000145 824 MNGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCG 890 (2054)
Q Consensus 824 ~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~ 890 (2054)
......++.++.++.......... +......+..+.++.|..+..++++.+++.|..+|.+++.
T Consensus 371 --~~~~~~~l~~l~~ll~~~~~~~~~-~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f~ 434 (434)
T d1q1sc_ 371 --TKIIQVILDAISNIFQAAEKLGET-EKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 434 (434)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 456888999998876421111111 1111112244568888899999999999999999999863
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=7.3e-25 Score=266.73 Aligned_cols=405 Identities=19% Similarity=0.202 Sum_probs=331.6
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhccCchh--HHHHHhcCChHHHHHhhcc-CCHHHHHHHHHHHHHHhcCCCCC
Q 000145 83 AQAMPLFISILRSGTPLAKVNVAATLSVLCKDEDL--RLKVLLGGCIPPLLSLLKS-ESTDTRKAAAEALYEVSSGGLSD 159 (2054)
Q Consensus 83 aGgVp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~--r~~v~~~GaIp~LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk 159 (2054)
.++|+.+++.|++++++.+..|+..|+++...+++ ...+...|++|.|+++|++ ++++++..|+++|.+++.+
T Consensus 12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~---- 87 (434)
T d1q1sc_ 12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG---- 87 (434)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTS----
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcC----
Confidence 46799999999999999999999999887544333 5678889999999999976 6789999999999999963
Q ss_pred ChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCH-----HHHH
Q 000145 160 DHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNA-----AAQS 234 (2054)
Q Consensus 160 ~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~-----evq~ 234 (2054)
+...+..+++.|++|.|+.+|.+++ ..+++.++++|.|++.+++.....+.+.|+++.++.++...+. ....
T Consensus 88 ~~~~~~~i~~~~~i~~l~~~L~~~~---~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~ 164 (434)
T d1q1sc_ 88 TSEQTKAVVDGGAIPAFISLLASPH---AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLR 164 (434)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHH
T ss_pred ChhhhhHhhhccchhhhhhccccCC---HHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHH
Confidence 4567889999999999999998654 6789999999999999887777889999999999999987643 3445
Q ss_pred HHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCc
Q 000145 235 NAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPS 314 (2054)
Q Consensus 235 ~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s 314 (2054)
.+++.+.+++.............+.++.+..++. ..+.+++..+..++.+++..+++.+..+.+.|+++.|++++.+++
T Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~ 243 (434)
T d1q1sc_ 165 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH-HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATE 243 (434)
T ss_dssp HHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred HHHHHHHHHhhcccccchhhhhhhHHHHHHHHHh-ccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccch
Confidence 6777888887655555455566788999999988 467789999999999998876666666677777777777655433
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHH
Q 000145 315 KECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDI 394 (2054)
Q Consensus 315 ~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~ 394 (2054)
.+
T Consensus 244 ~~------------------------------------------------------------------------------ 245 (434)
T d1q1sc_ 244 LP------------------------------------------------------------------------------ 245 (434)
T ss_dssp HH------------------------------------------------------------------------------
T ss_pred hh------------------------------------------------------------------------------
Confidence 22
Q ss_pred HHHHcCCCChhhHHHHHHHHHHHhhc-ChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhcc
Q 000145 395 LVMLLKPHDNKLVQERVLEAMASLYG-NIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKR 473 (2054)
Q Consensus 395 Lv~LLk~~~~e~Vq~~Aa~AL~~L~~-n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ 473 (2054)
++..++.++.+++. ++.....+.+.++++.++.++.+.+++++..++.+|.+++..+.+....+.+.
T Consensus 246 ------------~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 313 (434)
T d1q1sc_ 246 ------------IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313 (434)
T ss_dssp ------------HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred ------------hhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhh
Confidence 44455555555543 33445556677888999999999999999999999999998877778888889
Q ss_pred ccHHHHHhhhcCCChhhhHHHHHHHHHHhhhc-cchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhc------C
Q 000145 474 EGIQLLISLLGLSSEQHQEYAVQLIAILTEQV-DDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCC------H 546 (2054)
Q Consensus 474 ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s-~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~------~ 546 (2054)
|+++.+++++.+++.+++..++++|+|++.+. .+....+.+.|++++|++++.+++++++..+.++|.++.. +
T Consensus 314 ~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~ 393 (434)
T d1q1sc_ 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 393 (434)
T ss_dssp TCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999998854 3455667889999999999999999999999999998853 2
Q ss_pred ChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHH
Q 000145 547 SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKL 585 (2054)
Q Consensus 547 sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nL 585 (2054)
.+..+..+.+.|+++.|-.+..+++++++..|...|-+.
T Consensus 394 ~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 394 TEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 334677888999999988888889999999998887654
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.3e-25 Score=278.96 Aligned_cols=419 Identities=17% Similarity=0.195 Sum_probs=347.1
Q ss_pred chHHHHHHHhccCCHHHHHHHHHHHHHhccc-CccchhhhhccccHHHHHhhhcCC-ChhhhHHHHHHHHHHhhhccchh
Q 000145 432 EAKKVLIGLITMATADVREYLILSLTKLCRR-EVGIWEAIGKREGIQLLISLLGLS-SEQHQEYAVQLIAILTEQVDDSK 509 (2054)
Q Consensus 432 g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~-s~e~r~~Ive~ggIp~LV~LL~s~-d~~Vr~~Aa~aL~nLs~~s~e~r 509 (2054)
..++.++..+.+.+.+.+..++..++++... .......+++.|++|.|+++++.+ +..++..|+++|.|++.+++...
T Consensus 76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~ 155 (503)
T d1wa5b_ 76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 155 (503)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4577788888999999999999999987543 233456778899999999999854 66799999999999998777777
Q ss_pred hHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh
Q 000145 510 WAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA 589 (2054)
Q Consensus 510 ~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~ 589 (2054)
..+...|+++.++.+|.+++.++++.++++|+|++.+++..+..+.+.|+++.|+.++.+.++.++..++|+|.+++...
T Consensus 156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~ 235 (503)
T d1wa5b_ 156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 235 (503)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCC
Confidence 88889999999999999999999999999999999988899999999999999999999999999999999999998542
Q ss_pred chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcCh
Q 000145 590 DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQ 669 (2054)
Q Consensus 590 e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~ 669 (2054)
.. ... . ....++++.|+.++++++++++..++++|.+++..++
T Consensus 236 ~~-------------~~~--------------------~----~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~ 278 (503)
T d1wa5b_ 236 KP-------------QPD--------------------W----SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ 278 (503)
T ss_dssp SS-------------CCC--------------------H----HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH
T ss_pred cc-------------chH--------------------H----HHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCc
Confidence 10 000 0 1124578999999999999999999999999998788
Q ss_pred hhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHH
Q 000145 670 DICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALA 749 (2054)
Q Consensus 670 e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~ 749 (2054)
+....+.+.|+++.++.++.++++.++..++.+|++++... +.....+.+.|+++.|..++.+.++.++..++++|+
T Consensus 279 ~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~---~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~ 355 (503)
T d1wa5b_ 279 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN---DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS 355 (503)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHH---HHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999998632 246667888999999999999999999999999999
Q ss_pred HhhC-ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchh
Q 000145 750 NLLS-DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTD 828 (2054)
Q Consensus 750 NLa~-~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~ 828 (2054)
|++. ++.....+.+.++++.++.++.+++.+++..|+|+|.|++.+..........+.+.|+++.|+++|...+ ...
T Consensus 356 nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d--~~~ 433 (503)
T d1wa5b_ 356 NITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD--NRI 433 (503)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC--HHH
T ss_pred HHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCC--HHH
Confidence 9976 6677788889999999999999999999999999999999865433445555667889999999997543 445
Q ss_pred HHHHHHHHHHHhhccc----CCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccC
Q 000145 829 VADALEVVALLARTKQ----GLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 829 ~~~AL~ALa~La~~~~----~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
...++.++.++-.... ......+......+..+.++.|..+..++++.+++.|..+|.+++++.
T Consensus 434 ~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~ 501 (503)
T d1wa5b_ 434 IEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEE 501 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc
Confidence 7778888887653110 000011122222334567899999999999999999999999998764
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.8e-23 Score=261.54 Aligned_cols=398 Identities=15% Similarity=0.154 Sum_probs=335.6
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcCh--hhhHHHhhcchHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhh
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNI--FLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEA 469 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~--~~~~~L~~~g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~ 469 (2054)
+-++..+.+.+.+ .+..++..+..+.... .....+.+.|+++.|+.++.. .+.++|..++++|.+++..+......
T Consensus 79 ~~~~~~~~s~~~~-~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~ 157 (503)
T d1wa5b_ 79 PQMTQQLNSDDMQ-EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKV 157 (503)
T ss_dssp HHHHHHHSCSSHH-HHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHhcCCCHH-HHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455566666554 6778888888875432 334567888999999999975 46789999999999999887777778
Q ss_pred hhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChh
Q 000145 470 IGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED 549 (2054)
Q Consensus 470 Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~ 549 (2054)
+.+.|+++.++.++.+++.+++..++++|+|++..+++.+..+.+.|++++|+.++.+.++.++..++++|.+++.+.+.
T Consensus 158 ~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~ 237 (503)
T d1wa5b_ 158 VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKP 237 (503)
T ss_dssp HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSS
T ss_pred HHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCcc
Confidence 88899999999999999999999999999999987788999999999999999999999999999999999999976555
Q ss_pred HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHh
Q 000145 550 IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--------DSATINQLLALLLGDSPSSKAHVIKVLGHVLT 621 (2054)
Q Consensus 550 ~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~ 621 (2054)
........++++.|+.++++.+++++..++++|.+++... +.++++.++.++..+++.++..+..++++++.
T Consensus 238 ~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~ 317 (503)
T d1wa5b_ 238 QPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 317 (503)
T ss_dssp CCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHH
Confidence 4444455789999999999999999999999999998542 35678999999999999999999999999874
Q ss_pred hhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHH
Q 000145 622 MALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSAR 701 (2054)
Q Consensus 622 ~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~ 701 (2054)
. .+.....+...|+++.|..+++++++.++..+++++.|++.++++....+.+.|+++.++.++.+++..++..|++
T Consensus 318 ~---~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~ 394 (503)
T d1wa5b_ 318 G---NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW 394 (503)
T ss_dssp S---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred H---HHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHH
Confidence 3 2233444667889999999999999999999999999999888888999999999999999999999999999999
Q ss_pred HHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC------------ChHHHHHHHhcCcHHH
Q 000145 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS------------DPDIAAEVLLEDVVSA 769 (2054)
Q Consensus 702 AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~------------~~e~r~~Iv~~g~I~~ 769 (2054)
+|.|++.+..........+.+.|++++|+++|...+.++...++.+|.++.. .......+.+.|++..
T Consensus 395 ~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~ 474 (503)
T d1wa5b_ 395 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 474 (503)
T ss_dssp HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHH
Confidence 9999987322212345567899999999999999999999999999999853 1223456778899999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHhhh
Q 000145 770 LTRVLAEGTSEGKKNASRALHQLLK 794 (2054)
Q Consensus 770 LV~LL~s~~~evr~~Aa~AL~nL~~ 794 (2054)
|..+..+.++++++.|...|-+.-.
T Consensus 475 i~~Lq~~~~~~i~~~A~~il~~~f~ 499 (503)
T d1wa5b_ 475 IFNCQQNENDKIYEKAYKIIETYFG 499 (503)
T ss_dssp HHGGGGCSCHHHHHHHHHHHHHHSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 9888888899999999998876544
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.5e-22 Score=242.01 Aligned_cols=416 Identities=17% Similarity=0.117 Sum_probs=286.3
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhcc-CchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChh
Q 000145 84 QAMPLFISILRSGTPLAKVNVAATLSVLCK-DEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHV 162 (2054)
Q Consensus 84 GgVp~LV~LLks~s~evr~~AA~vL~~Ls~-~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~ 162 (2054)
+.||.||++|++++++++..++++|+++|. ++++|..+...|+||.|+++|+++++++|..|+++|.+|+.+ +..
T Consensus 2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~----~~~ 77 (457)
T d1xm9a1 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR----STT 77 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS----CHH
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcC----CHH
Confidence 469999999999999999999999999996 578999999999999999999999999999999999999962 567
Q ss_pred HHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhh----------------c
Q 000145 163 GMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLL----------------S 226 (2054)
Q Consensus 163 ~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL----------------~ 226 (2054)
++..+.+.|+++.|+.++.... +..++..+.++|.+++........ .... |++.++..+ .
T Consensus 78 ~~~~i~~~g~v~~li~~l~~~~--~~~~~~~a~~~l~~l~~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 153 (457)
T d1xm9a1 78 NKLETRRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSSTDELKEE-LIAD-ALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSSSTHHH-HHHH-HHHHHHHHTTHHHHTCC---------
T ss_pred HHHHHHHCCChHHHHHHHhccC--cHHHHHHHHHHHHHHHhhhhhHHH-HHhc-ccHHHHHHHHhhhhhhhcchhhhhcc
Confidence 8899999999999999997654 456899999999999998765533 3333 334444333 2
Q ss_pred cCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCC-----ChhHHHHHHHHHHHHhhccHHHHHHHHhcC
Q 000145 227 SDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNN-----DISVRASAADALEALSSKSIKAKKAVVAAD 301 (2054)
Q Consensus 227 s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~-----d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eag 301 (2054)
..+..++..++.+|.+++..+...+..+...|+++.++.++.+.. ...........+.+.... .+ .....
T Consensus 154 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~~ 228 (457)
T d1xm9a1 154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR---LD--AEVPT 228 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT---HH--HHSCC
T ss_pred cccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhh---hH--HHHHH
Confidence 346788999999999988544433344456678888888875210 001111111111111110 00 00000
Q ss_pred CHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCC
Q 000145 302 GVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGV 381 (2054)
Q Consensus 302 gL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~ 381 (2054)
....+...... ..
T Consensus 229 ~~~~~~~~~~~------------------------------------------~~------------------------- 241 (457)
T d1xm9a1 229 RYRQLEYNARN------------------------------------------AY------------------------- 241 (457)
T ss_dssp HHHHHHHTC-----------------------------------------------------------------------
T ss_pred HHHHHHhhhhh------------------------------------------hh-------------------------
Confidence 00000000000 00
Q ss_pred CCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhcc-CCHHHHHHHHHHHHHhc
Q 000145 382 DDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITM-ATADVREYLILSLTKLC 460 (2054)
Q Consensus 382 ~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls 460 (2054)
........+...............+.....+......+...++++.++.++.. .+++.+..+..++.+++
T Consensus 242 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~ 312 (457)
T d1xm9a1 242 ---------TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT 312 (457)
T ss_dssp ---------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ---------hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 00000000000000001111111122223344555566667788888888765 45788888889999987
Q ss_pred ccCcc-----chhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcC------C
Q 000145 461 RREVG-----IWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAG------S 529 (2054)
Q Consensus 461 ~~s~e-----~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~------s 529 (2054)
..... .+..+.+.++++.|+++++++++.++..++.+|++|+. +++++..+. .++++.++.+|... +
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~-~~~~~~~i~-~~~i~~li~~L~~~~~~~~~~ 390 (457)
T d1xm9a1 313 ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR-HPLLHRVMG-NQVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp TCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT-SGGGHHHHH-HHTHHHHHHTTTSCCSCSTTH
T ss_pred hccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhh-ChhHHHHHH-HhhHHHHHHHHhccccCcCCc
Confidence 65332 24556677899999999999999999999999999998 567776665 46899999998643 4
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccC-ChhHHHHHHHHHHHHHHhhc
Q 000145 530 QKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG-GPKGQDASAMALTKLIRAAD 590 (2054)
Q Consensus 530 ~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~-~~evq~~AA~AL~nLs~~~e 590 (2054)
++++..++++|.+|+.++++.++.+.+.|+++.|+.++++. ++.+++.|+.+|.+|+.+.+
T Consensus 391 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~ 452 (457)
T d1xm9a1 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHh
Confidence 67999999999999988888999999999999999999875 67899999999999986643
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.2e-22 Score=238.11 Aligned_cols=404 Identities=14% Similarity=0.135 Sum_probs=284.7
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHH
Q 000145 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2054)
Q Consensus 433 ~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I 512 (2054)
.+|.|++++.++++++|..++.+|.++|.++++++..+.+.||||.|+++++++++++|..|+++|++|+..+++++..+
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i 82 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 47899999999999999999999999999888999999999999999999999999999999999999998778899999
Q ss_pred HhhCCCchHhhhhhc-CCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhh----------------ccCChhHH
Q 000145 513 TAAGGIPPLVQLLEA-GSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL----------------KSGGPKGQ 575 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~s-~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LL----------------kS~~~evq 575 (2054)
.+.|+++.|++++.+ .+++++..++++|.+++.+....... .. ++++.++..+ +..++.++
T Consensus 83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (457)
T d1xm9a1 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL-IA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHH-HH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHH-Hh-cccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence 999999999999865 48899999999999998854433333 22 3344444322 34567899
Q ss_pred HHHHHHHHHHHHhh--------chhhHHHHHHHhcCCC------cchHHHHHHHHHHHHhhhcc--hHHHHhh---hhcc
Q 000145 576 DASAMALTKLIRAA--------DSATINQLLALLLGDS------PSSKAHVIKVLGHVLTMALQ--EDLVQKG---SAAN 636 (2054)
Q Consensus 576 ~~AA~AL~nLs~~~--------e~~~Ip~Lv~LL~~~~------~~V~~~a~~AL~~La~~~~~--~d~~~~~---l~~~ 636 (2054)
..++++|.+++.+. ..+.++.++++++... ..........+......... ....... ....
T Consensus 161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (457)
T d1xm9a1 161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA 240 (457)
T ss_dssp HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence 99999999987653 2457888888876321 11122222222211100000 0000000 0000
Q ss_pred cchHHHHHHhccCCHHH-HHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-CCHHHHHHHHHHHHHhhCCCCcc-
Q 000145 637 KGLRSLVQVLNSSNEEN-QEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-NTQMVATQSARALGALSRPTKTK- 713 (2054)
Q Consensus 637 GaI~~LV~LLks~s~ev-re~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d-gs~~vr~~AA~AL~nLs~s~~~~- 713 (2054)
.........+....... ...+...+.. ..........+...++++.++.++.. .++.++..+.+++.+++......
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 319 (457)
T d1xm9a1 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPE-EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp -------------------------CCC-CCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred hhHHHhhhhhhhhhHHHHHHHHhhhhHH-hhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence 00111111111111111 1112222222 22256666677777889999998865 57788999999999998743321
Q ss_pred -cchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC------CHHHHHHHH
Q 000145 714 -TTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG------TSEGKKNAS 786 (2054)
Q Consensus 714 -d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~------~~evr~~Aa 786 (2054)
...+..+.+.++++.|++++++.+++++..++.+|+||+.+++.+..+.+ ++++.++.++... +++++..|+
T Consensus 320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~ 398 (457)
T d1xm9a1 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSAC 398 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHH
Confidence 12345567789999999999999999999999999999999998877764 6899999988643 367999999
Q ss_pred HHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhccc
Q 000145 787 RALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQ 844 (2054)
Q Consensus 787 ~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~ 844 (2054)
.+|++|+.++ ...++.+.+.|++++|+.++.+.+ ....+..|..+|.+|...++
T Consensus 399 ~~L~~l~~~~---~~~~~~l~~~g~i~~L~~l~~~~~-~~~~~~aA~~~L~~L~~~~~ 452 (457)
T d1xm9a1 399 YTVRNLMASQ---PQLAKQYFSSSMLNNIINLCRSSA-SPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHTTC---THHHHHHCCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHhcCC---HHHHHHHHHCCCHHHHHHHHhCCC-CHHHHHHHHHHHHHHHcCHh
Confidence 9999999765 456777778899999999997543 34557889999999976544
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=5.5e-16 Score=196.25 Aligned_cols=568 Identities=14% Similarity=0.132 Sum_probs=373.0
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCC
Q 000145 127 IPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKD 206 (2054)
Q Consensus 127 Ip~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e 206 (2054)
|..|+.-|+++|+.+|..|++.|..++.. .|.+.. ....+|.|.++++.. ..+...+...|.++...-.
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~------lg~~~~-~~~lip~l~~~~~~~----~ev~~~~~~~l~~~~~~~~ 80 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALA------LGVERT-RSELLPFLTDTIYDE----DEVLLALAEQLGTFTTLVG 80 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHH------SCHHHH-HHTHHHHHHHTCCCC----HHHHHHHHHHHTTCSGGGT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHH------hCcHhh-HHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHcC
Confidence 45677888899999999999999998852 112221 235789999988643 2355566666766543210
Q ss_pred chhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHH
Q 000145 207 GYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEAL 286 (2054)
Q Consensus 207 ~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nL 286 (2054)
+. . .-..-++.+..++..++..+|..|+.+|..++...+ ........++.+..+.. +.....|..+...+..+
T Consensus 81 ~~-~--~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~---~~~~~~~l~p~i~~L~~-~~~~~~r~~a~~ll~~~ 153 (588)
T d1b3ua_ 81 GP-E--YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS---PSDLEAHFVPLVKRLAG-GDWFTSRTSACGLFSVC 153 (588)
T ss_dssp SG-G--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSC---HHHHHHTHHHHHHHHHT-CSSHHHHHHHGGGHHHH
T ss_pred Ch-h--HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHH
Confidence 00 0 001124556666777788899999999988873211 11112223333333333 23334444444333333
Q ss_pred hhcc-HHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHH
Q 000145 287 SSKS-IKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADII 365 (2054)
Q Consensus 287 s~~s-~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~L 365 (2054)
.... +..+
T Consensus 154 ~~~~~~~~~----------------------------------------------------------------------- 162 (588)
T d1b3ua_ 154 YPRVSSAVK----------------------------------------------------------------------- 162 (588)
T ss_dssp TTTSCHHHH-----------------------------------------------------------------------
T ss_pred HHHhhHHHH-----------------------------------------------------------------------
Confidence 2210 0000
Q ss_pred HHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCC
Q 000145 366 GALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMAT 445 (2054)
Q Consensus 366 gaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd 445 (2054)
..+.+.+..++.+.++ .+|..++.+++.++..-.. .......++.+..++.+.+
T Consensus 163 -----------------------~~l~~~~~~l~~D~~~-~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~ 216 (588)
T d1b3ua_ 163 -----------------------AELRQYFRNLCSDDTP-MVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQ 216 (588)
T ss_dssp -----------------------HHHHHHHHHHHTCSCH-HHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSC
T ss_pred -----------------------HHHHHHHHHHhccCCH-HHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCc
Confidence 0112344445555444 3888888888877543211 1222345677888888889
Q ss_pred HHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhh
Q 000145 446 ADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLL 525 (2054)
Q Consensus 446 ~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL 525 (2054)
..++..++.++..++..-+.. -.....+|.+.+++++.+..+|..++.+|.+++..... .+.....++.+..++
T Consensus 217 ~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~ll 290 (588)
T d1b3ua_ 217 DSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM 290 (588)
T ss_dssp HHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHHHHH
Confidence 999999999988876542211 11223578888899999999999999999998763221 223345678888999
Q ss_pred hcCCHHHHHHHHHHHHHHhcCC-hhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh-----chhhHHHHHH
Q 000145 526 EAGSQKAREVAAHVLWILCCHS-EDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA-----DSATINQLLA 599 (2054)
Q Consensus 526 ~s~s~~Vre~AA~aL~nLa~~s-d~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~-----e~~~Ip~Lv~ 599 (2054)
++.++++|..++..+..++..- ...+....-...++.+...+.+.++.++..++.++..++..- ....+|.+.+
T Consensus 291 ~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~ 370 (588)
T d1b3ua_ 291 KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLA 370 (588)
T ss_dssp TCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHH
Confidence 9999999999999999886532 111222222556788888999999999999999888876432 1346788899
Q ss_pred HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCC
Q 000145 600 LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDE 679 (2054)
Q Consensus 600 LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g 679 (2054)
++++.+++++..+..+++.+.......... ...++.+..++++.++.+|..++..+..++..- ........
T Consensus 371 ~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~------~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~---~~~~~~~~ 441 (588)
T d1b3ua_ 371 QLKDECPEVRLNIISNLDCVNEVIGIRQLS------QSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQL---GVEFFDEK 441 (588)
T ss_dssp HHTCSCHHHHHHHHTTCHHHHHHSCHHHHH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH---CGGGCCHH
T ss_pred HHHhhhhhhhhHHHHHHHHHHhhcchhhhh------hHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHc---ChHhHHHH
Confidence 999999999988888877765433222221 235788888999999999999999999987521 11223334
Q ss_pred CHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHH
Q 000145 680 IVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAA 759 (2054)
Q Consensus 680 ~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~ 759 (2054)
..+.+..++.+....+|..|+++|+.+.... .........++.+..++++.+..+|..++.++..+... ...
T Consensus 442 l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~------~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~--~~~ 513 (588)
T d1b3ua_ 442 LNSLCMAWLVDHVYAIREAATSNLKKLVEKF------GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV--CGQ 513 (588)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH------CHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHh------CcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--cCh
Confidence 5677788899999999999999999998621 11122344778888999999999999999998888631 112
Q ss_pred HHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHH
Q 000145 760 EVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALL 839 (2054)
Q Consensus 760 ~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~L 839 (2054)
....+..+|.|.+++.+..+.+|..++++|.++....+. +.+ ...+.+++.-+. .+.+...+..|-.++..|
T Consensus 514 ~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~-~~~------~~~i~~~l~~L~-~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN-STL------QSEVKPILEKLT-QDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH-HHH------HHHHHHHHHHHT-TCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc-HhH------HHHHHHHHHHHc-CCCCHHHHHHHHHHHHHH
Confidence 334456899999999999999999999999999875421 111 122344444443 344566788888888776
Q ss_pred h
Q 000145 840 A 840 (2054)
Q Consensus 840 a 840 (2054)
+
T Consensus 586 ~ 586 (588)
T d1b3ua_ 586 S 586 (588)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.8e-16 Score=196.85 Aligned_cols=569 Identities=15% Similarity=0.099 Sum_probs=383.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHH
Q 000145 86 MPLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMK 165 (2054)
Q Consensus 86 Vp~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re 165 (2054)
+..|++-|+++++.+|..+++.|..++..-.... .....+|.|.+++.+++ +++..++..|.++...-. .+..
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~--~~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~~~~~--~~~~-- 84 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLVG--GPEY-- 84 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH--HHHTHHHHHHHTCCCCH-HHHHHHHHHHTTCSGGGT--SGGG--
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHh--hHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHcC--ChhH--
Confidence 4557788999999999999999988764211111 11246788889887654 678888888887764210 1111
Q ss_pred HHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHh
Q 000145 166 IFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLML 245 (2054)
Q Consensus 166 ~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~ 245 (2054)
....++.+..++..+ +..+++.|..+|..++...... -....-++.+..+..++....+..++.++..+..
T Consensus 85 ---~~~ll~~l~~l~~~~---~~~Vr~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~ 155 (588)
T d1b3ua_ 85 ---VHCLLPPLESLATVE---ETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYP 155 (588)
T ss_dssp ---GGGGHHHHHHHTTSS---CHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTT
T ss_pred ---HHHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 123567777777544 4679999999999998865432 1222234545555566666778888887777662
Q ss_pred hcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhh
Q 000145 246 AFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQA 325 (2054)
Q Consensus 246 ~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~ 325 (2054)
... . -......+.+..+++ +.+..+|..++..+..++..-.. .......++.+.+++.++...
T Consensus 156 ~~~---~-~~~~~l~~~~~~l~~-D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~--------- 218 (588)
T d1b3ua_ 156 RVS---S-AVKAELRQYFRNLCS-DDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDS--------- 218 (588)
T ss_dssp TSC---H-HHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHH---------
T ss_pred Hhh---H-HHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchh---------
Confidence 111 1 112235666677766 67889999999999998764111 112233455666666665533
Q ss_pred hhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChh
Q 000145 326 LQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNK 405 (2054)
Q Consensus 326 lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e 405 (2054)
++..++.++..+....+. ......+.+.+..++.+.+.
T Consensus 219 vr~~a~~~l~~i~~~~~~-----------------------------------------~~~~~~i~~~l~~~~~D~~~- 256 (588)
T d1b3ua_ 219 VRLLAVEACVNIAQLLPQ-----------------------------------------EDLEALVMPTLRQAAEDKSW- 256 (588)
T ss_dssp HHTTHHHHHHHHHHHSCH-----------------------------------------HHHHHHTHHHHHHHHTCSSH-
T ss_pred hHHHHHHHHHHhhccCCH-----------------------------------------HHHHHHHHHHHHHhcccccH-
Confidence 455566666554321100 00011234666677766544
Q ss_pred hHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCc-cchhhhhccccHHHHHhhhc
Q 000145 406 LVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREV-GIWEAIGKREGIQLLISLLG 484 (2054)
Q Consensus 406 ~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~-e~r~~Ive~ggIp~LV~LL~ 484 (2054)
.+|..++.+++.+.... .........++.+..++.+.+.+++..++..+..++..-. .......-...++.+...++
T Consensus 257 ~Vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~ 334 (588)
T d1b3ua_ 257 RVRYMVADKFTELQKAV--GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS 334 (588)
T ss_dssp HHHHHHHHTHHHHHHHH--CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHh--hhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhc
Confidence 48999999999885421 1223334678889999999999999999999988876422 22222222356778888889
Q ss_pred CCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHH
Q 000145 485 LSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFL 564 (2054)
Q Consensus 485 s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV 564 (2054)
+.+..+|..++.++..++...... ......+|.+..++++.+++++..+...+..+...-.. ... ....++.+.
T Consensus 335 d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~-~~~--~~~ll~~l~ 408 (588)
T d1b3ua_ 335 DANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQL--SQSLLPAIV 408 (588)
T ss_dssp CSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HHH--HHHHHHHHH
T ss_pred CCChHHHHHHHHHHhhhhhccchh---HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch-hhh--hhHHHHHHH
Confidence 999999999888887776522211 11233578888899999999999998887776542111 111 133577888
Q ss_pred HhhccCChhHHHHHHHHHHHHHHhh-----chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccch
Q 000145 565 WLLKSGGPKGQDASAMALTKLIRAA-----DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGL 639 (2054)
Q Consensus 565 ~LLkS~~~evq~~AA~AL~nLs~~~-----e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI 639 (2054)
.++++.++.+|..++.++..++..- .....+.+..++.+....++..+.++++.+......... ....+
T Consensus 409 ~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~------~~~i~ 482 (588)
T d1b3ua_ 409 ELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA------HATII 482 (588)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH------HHHTH
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHH------HHHHH
Confidence 8999999999999999999987642 134567788889999999999999999998754332221 12357
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHH
Q 000145 640 RSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMS 719 (2054)
Q Consensus 640 ~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~ 719 (2054)
+.+..+.++++...|..++.++..+....+ ........++.+.++++|..+.+|..++++|..+....+. .
T Consensus 483 ~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~---~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~------~ 553 (588)
T d1b3ua_ 483 PKVLAMSGDPNYLHRMTTLFCINVLSEVCG---QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN------S 553 (588)
T ss_dssp HHHHHTTTCSCHHHHHHHHHHHHHHHHHHH---HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH------H
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCc------H
Confidence 888888899999999999999988865322 2234456899999999999999999999999999862221 2
Q ss_pred HHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 720 YIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 720 I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
.......+.|..+++++|.+||..|..||.-|+
T Consensus 554 ~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l~ 586 (588)
T d1b3ua_ 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 233345566778888999999999999998775
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=8.1e-15 Score=168.61 Aligned_cols=194 Identities=17% Similarity=0.179 Sum_probs=168.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhccC-chhHHHHHhcCChHH
Q 000145 52 MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFIS-ILRSGTPLAKVNVAATLSVLCKD-EDLRLKVLLGGCIPP 129 (2054)
Q Consensus 52 sss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~-LLks~s~evr~~AA~vL~~Ls~~-ee~r~~v~~~GaIp~ 129 (2054)
+.+.+.+..|+..|.+++...++++.+. . .||++.++. +|+++++++|..|+.+|++++.+ +..+..+...|++|.
T Consensus 28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~-~-~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~ 105 (264)
T d1xqra1 28 AADQQEREGALELLADLCENMDNAADFC-Q-LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 105 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHH-H-TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCHHHHHHHH-H-cCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 3456778999999999998776666655 4 699999886 78899999999999999999975 667888889999999
Q ss_pred HHHhhcc-CCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCch
Q 000145 130 LLSLLKS-ESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGY 208 (2054)
Q Consensus 130 LV~LL~s-ed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r 208 (2054)
|+++|.+ .+++++..|+.+|.+++.+ .+.+++.+...|+++.|++++.+++ ..++..++++|.+++..++..
T Consensus 106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~----~~~~~~~~~~~~gi~~L~~lL~~~~---~~~~~~a~~~L~~l~~~~~~~ 178 (264)
T d1xqra1 106 LLRLLDRDACDTVRVKALFAISCLVRE----QEAGLLQFLRLDGFSVLMRAMQQQV---QKLKVKSAFLLQNLLVGHPEH 178 (264)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcc----chhhHHHHHHhhhhhHHHHHHhcCc---hHHHHHHHHHHHHHHhccHHH
Confidence 9999976 6899999999999999973 5667889999999999999998754 568999999999999988888
Q ss_pred hHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchh
Q 000145 209 WRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTV 254 (2054)
Q Consensus 209 ~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i 254 (2054)
...+.+.|+++.|+.+|.++++++++.++++|.+|+..++......
T Consensus 179 ~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~ 224 (264)
T d1xqra1 179 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 224 (264)
T ss_dssp HHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8999999999999999999999999999999999996554444333
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.3e-11 Score=165.68 Aligned_cols=654 Identities=14% Similarity=0.141 Sum_probs=354.1
Q ss_pred hHHHHHhhccCCHHHHHHHHHHHHHHhcC-CCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC
Q 000145 127 IPPLLSLLKSESTDTRKAAAEALYEVSSG-GLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK 205 (2054)
Q Consensus 127 Ip~LV~LL~sed~eVr~aAa~AL~nLS~~-~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~ 205 (2054)
|..|++-+.+.|++.|..|+.-|.+.-.. ....+.... ..+++.|+++|.+++ +.|+..|+.+|..+...-
T Consensus 5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~-----~~i~~~ll~~L~D~~---~~Vq~~A~k~l~~l~~~~ 76 (1207)
T d1u6gc_ 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSE-----RKVVKMILKLLEDKN---GEVQNLAVKCLGPLVSKV 76 (1207)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHH-----HHHHHHHHHHTTCSS---HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHH-----HHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHHhC
Confidence 34566667789999999999888876432 111111111 236889999997665 569999999999998764
Q ss_pred CchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCc-----chhcccchHHHHHHHhccCCChhHHHHHH
Q 000145 206 DGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSI-----PTVIDSGAVKALVQLVGQNNDISVRASAA 280 (2054)
Q Consensus 206 e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r-----~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa 280 (2054)
... .+ ...++.|+..+.+++...+..+..+|..+...-+... ........++.+...+.+..+..++..+.
T Consensus 77 ~~~--~~--~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al 152 (1207)
T d1u6gc_ 77 KEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEAL 152 (1207)
T ss_dssp CHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred cHh--hH--HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 332 11 1246777777777888888888888887764222111 11112234455555555566778888888
Q ss_pred HHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhh
Q 000145 281 DALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAP 360 (2054)
Q Consensus 281 ~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~ 360 (2054)
.++..+.......-.. .....++.++..+.++... ++..|..+|..+....+..
T Consensus 153 ~~l~~l~~~~g~~l~~-~~~~il~~l~~~l~~~~~~---------vR~~A~~~l~~l~~~~~~~---------------- 206 (1207)
T d1u6gc_ 153 DIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLA---------VRKRTIIALGHLVMSCGNI---------------- 206 (1207)
T ss_dssp HHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHH---------HHHHHHHHHHHHTTTC-------------------
T ss_pred HHHHHHHHHhhHhhHH-HHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHHHHCCHH----------------
Confidence 8888776531100000 0011234444555544422 5667777776664322110
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhh--cchHHHHH
Q 000145 361 VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH--AEAKKVLI 438 (2054)
Q Consensus 361 iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~--~g~I~~LI 438 (2054)
.+ . .+.+.++..+........+..++.+++.++.... ..+.. ...++.++
T Consensus 207 ------------------------~~-~-~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~l~~i~~~l~ 258 (1207)
T d1u6gc_ 207 ------------------------VF-V-DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG--HRIGEYLEKIIPLVV 258 (1207)
T ss_dssp -------------------------C-T-THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS--GGGTTSCTTHHHHHH
T ss_pred ------------------------HH-H-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcc--hhhHHHHHHHHHHHH
Confidence 00 0 0112222222111112244455666666643211 11111 35678899
Q ss_pred HHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCC
Q 000145 439 GLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGI 518 (2054)
Q Consensus 439 ~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaI 518 (2054)
..+...+++++..+..++..+....+...... -...++.+.+.++......................+. .....
T Consensus 259 ~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~-~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 332 (1207)
T d1u6gc_ 259 KFCNVDDDELREYCIQAFESFVRRCPKEVYPH-VSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDD-----DDQGS 332 (1207)
T ss_dssp HHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHH-HHHHHHHHTTCCCCC--------------------------------
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhChhhhhhh-HHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccch-----hhhhH
Confidence 99999999999999999888876533221111 1123344444444321111111111111111100000 01112
Q ss_pred chHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHH
Q 000145 519 PPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQLL 598 (2054)
Q Consensus 519 p~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv 598 (2054)
+....-..+.+..+|..++.+|..+.....+.-... -...++.|+..+++.++.++..+..++..+.............
T Consensus 333 ~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~-~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~ 411 (1207)
T d1u6gc_ 333 DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF-YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 411 (1207)
T ss_dssp ---------CTTHHHHHHHHHHHHHHTTCCTTHHHH-HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhc
Confidence 222223344577899999999999876543322222 2568899999999999999999999888876542211000000
Q ss_pred HHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhC
Q 000145 599 ALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATD 678 (2054)
Q Consensus 599 ~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~ 678 (2054)
............ ..+. .-...++.+...+++.+..++..+...+..+....+...... -.
T Consensus 412 ~~~~~~~~~~~~-----------------~l~~--~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~-l~ 471 (1207)
T d1u6gc_ 412 PDAMEQGETPLT-----------------MLQS--QVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQH-IP 471 (1207)
T ss_dssp ------CCCHHH-----------------HHHH--HTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGG-HH
T ss_pred hHHHHhhcchHH-----------------HHHH--HhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHh-hH
Confidence 000000000000 0000 112346778888888999999999999999876433221111 12
Q ss_pred CCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--C
Q 000145 679 EIVNPCMRLLTSN--TQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--D 754 (2054)
Q Consensus 679 g~V~~Lv~LL~dg--s~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~ 754 (2054)
..++.+...+.+. +..++..+...+..+...... . ...-.-...++.+...+.+....++.++..++..+.. .
T Consensus 472 ~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~ 548 (1207)
T d1u6gc_ 472 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP--Q-VFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIR 548 (1207)
T ss_dssp HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCG--G-GGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccH--H-HHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhh
Confidence 3455666666653 457788888888888763222 1 1112234466777888888888999888888877742 1
Q ss_pred h-------HHHHHHHhcCcHHHHHHHHc--CCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCC
Q 000145 755 P-------DIAAEVLLEDVVSALTRVLA--EGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMN 825 (2054)
Q Consensus 755 ~-------e~r~~Iv~~g~I~~LV~LL~--s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~ 825 (2054)
+ +....+ ...++.+...+. +.+.+++..|..+++.+..... +...... ...++.++..+.+
T Consensus 549 ~~~~~~~~~~~~~~--~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~--~~~~~~~--~~~l~~l~~~l~~---- 618 (1207)
T d1u6gc_ 549 PLDQPSSFDATPYI--KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLG--DNLGSDL--PNTLQIFLERLKN---- 618 (1207)
T ss_dssp CSSSCCCCCCHHHH--HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTG--GGCCTHH--HHHHHHHHHHTTS----
T ss_pred hhccchhhhhHHHH--HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhh--hhhHHHH--HHHHHHHHHHhcc----
Confidence 1 111111 113344444444 3468899999999999876532 1111110 2244445555532
Q ss_pred chhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCC
Q 000145 826 GTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQP 893 (2054)
Q Consensus 826 ~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~ 893 (2054)
...+..++.++..++....... .. ++ ....++.+...+...++.++..++.+|..++...+
T Consensus 619 ~~~r~~a~~~l~~i~~~~~~~~-~~-~~-----l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~ 679 (1207)
T d1u6gc_ 619 EITRLTTVKALTLIAGSPLKID-LR-PV-----LGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 679 (1207)
T ss_dssp SSHHHHHHHHHHHHTTCSSCCC-CH-HH-----HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHhccchh-HH-HH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcc
Confidence 2347778888888874321111 00 11 12346777888888999999999999998887653
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.9e-11 Score=164.70 Aligned_cols=986 Identities=15% Similarity=0.124 Sum_probs=493.2
Q ss_pred hHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHH
Q 000145 218 VDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAV 297 (2054)
Q Consensus 218 I~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I 297 (2054)
+..|++.+.+++++.|..|+.-|.+....+.-....-.....++.+++.+. +.+.+||..|..+|..+..+.++...
T Consensus 5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~-D~~~~Vq~~A~k~l~~l~~~~~~~~~-- 81 (1207)
T d1u6gc_ 5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQV-- 81 (1207)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHH--
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCcHhhH--
Confidence 456777788899999999988777655322111122223458899999997 67889999999999998775322211
Q ss_pred HhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhc
Q 000145 298 VAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQ 377 (2054)
Q Consensus 298 ~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~ 377 (2054)
...++.|+..+.+++.. .+..+..+|..+...++.. ..........
T Consensus 82 --~~l~~~L~~~l~~~~~~---------~r~~~~~~L~~i~~~l~~~----------~~~~~~~~~~------------- 127 (1207)
T d1u6gc_ 82 --ETIVDTLCTNMLSDKEQ---------LRDISSIGLKTVIGELPPA----------SSGSALAANV------------- 127 (1207)
T ss_dssp --HHHHHHHHHHTTCSSSH---------HHHHHHHHHHHHHHHCC---------------CCTHHHH-------------
T ss_pred --HHHHHHHHHHhcCCchh---------hhHHHHHHHHHHHHhcccc----------cccchhHHHH-------------
Confidence 12345666655554432 3334444444432211100 0000000000
Q ss_pred CCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcCh--hhhHHHhhcchHHHHHHHhccCCHHHHHHHHHH
Q 000145 378 KSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNI--FLSQWVSHAEAKKVLIGLITMATADVREYLILS 455 (2054)
Q Consensus 378 ~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~--~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~A 455 (2054)
-..+.+.+...+.......++..++..++.+.... .... .....++.++..+.+.+..++..|+.+
T Consensus 128 ----------~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~--~~~~il~~l~~~l~~~~~~vR~~A~~~ 195 (1207)
T d1u6gc_ 128 ----------CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIA 195 (1207)
T ss_dssp ----------HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHH--HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 00112333333444444458888888888774321 1111 112456777888888999999999999
Q ss_pred HHHhcccCccchhhhhccccHHHHHhhh-cCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHH
Q 000145 456 LTKLCRREVGIWEAIGKREGIQLLISLL-GLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKARE 534 (2054)
Q Consensus 456 L~~Ls~~s~e~r~~Ive~ggIp~LV~LL-~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre 534 (2054)
|..+.....+.. + ...++.+++.+ .+.+...+..++.++..++...+. +..-.-...++.+.+.+.+.++++|+
T Consensus 196 l~~l~~~~~~~~--~--~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~~~~~~~r~ 270 (1207)
T d1u6gc_ 196 LGHLVMSCGNIV--F--VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDELRE 270 (1207)
T ss_dssp HHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTTTHH
T ss_pred HHHHHHHCCHHH--H--HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch-hhHHHHHHHHHHHHHHhcCccHHHHH
Confidence 999876532211 1 12356666544 455666788888888888874332 21111134567777788888999999
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHcCChHHHHHhhccCChhHHHHH-HHHHHHHHHh---hchhhHHHHHHHhcCCCcchH
Q 000145 535 VAAHVLWILCCHSED-IRACVESAGAVPAFLWLLKSGGPKGQDAS-AMALTKLIRA---ADSATINQLLALLLGDSPSSK 609 (2054)
Q Consensus 535 ~AA~aL~nLa~~sd~-~r~~I~e~GaI~aLV~LLkS~~~evq~~A-A~AL~nLs~~---~e~~~Ip~Lv~LL~~~~~~V~ 609 (2054)
.+..++..+...... ....+ ...++.+...++. ++...... .......... ......+.......+....++
T Consensus 271 ~al~~l~~l~~~~~~~~~~~~--~~ii~~~l~~l~~-dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR 347 (1207)
T d1u6gc_ 271 YCIQAFESFVRRCPKEVYPHV--STIINICLKYLTY-DPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVR 347 (1207)
T ss_dssp HHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCC-C------------------------------------CTTHHH
T ss_pred HHHHHHHHHHHhChhhhhhhH--HHHHHHHHHHHhc-CcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHH
Confidence 999999888653221 11111 1122222233322 22221111 1111111000 001112222222344556678
Q ss_pred HHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhh----------------
Q 000145 610 AHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICG---------------- 673 (2054)
Q Consensus 610 ~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~---------------- 673 (2054)
..+..+|..+....+.. ... .-...++.|+..+++.++.+|..+..++..+.........
T Consensus 348 ~~a~~~L~~l~~~~~~~--l~~--~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (1207)
T d1u6gc_ 348 RAAAKCLDAVVSTRHEM--LPE--FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLT 423 (1207)
T ss_dssp HHHHHHHHHHHTTCCTT--HHH--HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHH
T ss_pred HHHHHHHHhHHHHHHHH--HHH--HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHH
Confidence 88888888876543221 111 1234678888888888999999999988887642111110
Q ss_pred --hhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHH
Q 000145 674 --SLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALA 749 (2054)
Q Consensus 674 --~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~ 749 (2054)
.-.-...++.+.+.+++.+..++..+..++..+....+. .....+ ...++.+...+.+ .+..++..++..+.
T Consensus 424 ~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~--~l~~~l--~~~~~~i~~~l~~~~~~~~~~~~al~~l~ 499 (1207)
T d1u6gc_ 424 MLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG--ALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLY 499 (1207)
T ss_dssp HHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT--TTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcch--HHHHhh--HhhHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 011134567788888899999999999999998763332 111111 1245556666654 45677888888888
Q ss_pred HhhCC--hHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCC-CchhHhhhhh--hhhhHHHHHHhhccCCC
Q 000145 750 NLLSD--PDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFP-VGDVLKGNAQ--CRFVVLTLVDSLNAMDM 824 (2054)
Q Consensus 750 NLa~~--~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~-~~e~i~~~i~--~~g~v~~LV~LL~sg~~ 824 (2054)
.+... +..-. -......+.+...+.+..+.++..|..++..+...-. .......... -......++..+...+.
T Consensus 500 ~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 578 (1207)
T d1u6gc_ 500 VILCNHSPQVFH-PHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADI 578 (1207)
T ss_dssp HHHHSSCGGGGH-HHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSS
T ss_pred HHHHhccHHHHH-HHHHhhhhhHHHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhccc
Confidence 88652 22211 1234567888888999999999999988888765311 1000000000 02234455556665666
Q ss_pred CchhHHHHHHHHHHHhhcccCCCccCCcccccccCCCchHHHHHhhhcCChhHHHHHHHHHHHhhccCCc-hhhhhhhcc
Q 000145 825 NGTDVADALEVVALLARTKQGLNFTYPPWAALAEVPSSIEPLVCCLAEGPPPLQDKAIEILSRLCGDQPA-VLGDFLMAR 903 (2054)
Q Consensus 825 ~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~~~~~vq~~Ai~iL~~L~~~~~~-~~~~~~~~~ 903 (2054)
+...+..|+.+++.+...... ... ...+..++.+...+. ++..+..++..+..+...... ..
T Consensus 579 ~~e~~~~al~~l~~l~~~~~~--~~~------~~~~~~l~~l~~~l~--~~~~r~~a~~~l~~i~~~~~~~~~------- 641 (1207)
T d1u6gc_ 579 DQEVKERAISCMGQIICNLGD--NLG------SDLPNTLQIFLERLK--NEITRLTTVKALTLIAGSPLKIDL------- 641 (1207)
T ss_dssp CHHHHHHHHHHHHHHHHHTGG--GCC------THHHHHHHHHHHHTT--SSSHHHHHHHHHHHHTTCSSCCCC-------
T ss_pred chHHHHHHHHHHHHHHHHhhh--hhH------HHHHHHHHHHHHHhc--chhhHHHHHHHHHHHHHhccchhH-------
Confidence 666788888888877642111 010 001112333433333 333566677777766543321 00
Q ss_pred cccHHHHHHHH---hcccCceeehhhhHHHHHhcccchhhhHHHHhhcCCcHHHHHHHHHHhhhccCCCCCCcccccCCC
Q 000145 904 SSSIGALADRI---MHSSSLEVRVGGAALLICAAKEHKKQSMDALDLSGYLKPLIYALVDMMKQNSSCSSLDIEVRTPRG 980 (2054)
Q Consensus 904 ~~~i~~La~~i---l~s~~~ev~~~~~~~~i~~~k~~~~~~~~~L~~~g~~~~~i~~Lv~l~~~~~~~~~~d~~~~~~~~ 980 (2054)
..+...+...+ +.+....+|
T Consensus 642 ~~~l~~~~~~l~~~l~~~~~~~r--------------------------------------------------------- 664 (1207)
T d1u6gc_ 642 RPVLGEGVPILASFLRKNQRALK--------------------------------------------------------- 664 (1207)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHH---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcccchHHHH---------------------------------------------------------
Confidence 00111111111 111111000
Q ss_pred ccccccccccCCCCcCCCCCcchhhHHHHHHHHHhccCCCCcchhhhccchHHHHHHhhccCCCCcccccccchhH-HHH
Q 000145 981 YMERTAFQEADDFDVPDPATILGGTVALWLLLIISSFLRNNNVTVMEAGALEALSDKLASYTSNPQAEFEDTEGIW-ISA 1059 (2054)
Q Consensus 981 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ll~~~~~~~~~~k~~~~e~g~~~~l~~~l~~~~~~~q~~~~~~~~~~-~~~ 1059 (2054)
..+++.|..+..+.+.... ...++.+...+...-. +++...- .+.
T Consensus 665 ------------------------~~al~~L~~l~~~~~~~~~----~~~~~~~l~~l~~ll~------~~d~~v~~~~l 710 (1207)
T d1u6gc_ 665 ------------------------LGTLSALDILIKNYSDSLT----AAMIDAVLDELPPLIS------ESDMHVSQMAI 710 (1207)
T ss_dssp ------------------------HHHHHHHHHHHHHCCTTCC----HHHHHHHHTTCGGGSC------TTCHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHhccccch----hHHHhhHHHhhccccc------cccHHHHHHHH
Confidence 1122222222222111100 0001111111100000 0000000 122
Q ss_pred HHHHHHccCcccccchhhhccHHHHHHHhcccchhhhHHHH--HHHHHhhccCCccchhhhhccccchhhhhhhcccccC
Q 000145 1060 LFLAILFQDANIVLSPATMRIIPALALLLRSDEVIDRFFAA--QAMASLVCSGSKGIILAIANSGAVAGLITLIGHIESD 1137 (2054)
Q Consensus 1060 ~ll~~lf~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aa--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1137 (2054)
.+|+.+.+...-...+..-..+|.+..++++.-.....+.+ .....++..+..+... ..++..+-..-.+
T Consensus 711 ~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~l~~~l~~~~~~ 782 (1207)
T d1u6gc_ 711 SFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGY--------MDLLRMLTGPVYS 782 (1207)
T ss_dssp HHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSH--------HHHHHHHSTTTTT
T ss_pred HHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccch--------HHHHHHHHHhhcc
Confidence 34444544332222333445566777666654332221111 1111222223222110 0111111000000
Q ss_pred CchhhhhhhhhhcccCCcHH--HHHhhhcccccccchhhhhhhhhHHHhccCCCCCCCChhHHHHHHHHhhcCCCcchhH
Q 000145 1138 TPNLVALSEEFFLVRYPDEV--VLEKLFEIEDVRVGSTARKSIPLLVDILRPIPDRPGAPPVAVRLLTQIVDGSDTNKLI 1215 (2054)
Q Consensus 1138 ~~~~~~~~~~~~~~~~~~~~--~l~~lf~~~~ir~~~~a~~~i~~lv~~l~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~ 1215 (2054)
. ......++. .+.+.+..=....+....+-+..++.........+.....|+..|-.+...-+...
T Consensus 783 ~----------~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~-- 850 (1207)
T d1u6gc_ 783 Q----------STALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG-- 850 (1207)
T ss_dssp C--------------CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCS--
T ss_pred c----------cchhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccc--
Confidence 0 000000000 00000000000011111111111111111111111222244444443332111110
Q ss_pred HHhcchhhHHHHhhcCCCCcccHHHHHHHHHHhhcCcccccchhhhhhHHHHHHHHHcCCCchhhhHHHHHhhhcccccc
Q 000145 1216 MAEAGGLDALTKYLSLSPQDSTEATITELFRILFSNPDLIRYEASLSSLNQLIAVLHLGSRGARLSAARALHQLFDAENI 1295 (2054)
Q Consensus 1216 ~~e~~~~~~l~k~ls~~~~~~~~~~~~~l~~~lf~~~~~~~~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~ 1295 (2054)
-....+.+.+.++ +|+++...+|++.++.+... .....+..+...+.. ....+|....+|.+++..-..
T Consensus 851 --~~~l~~~l~~~l~-~~~~~vr~aAa~aLg~l~~~-------~~~~~lp~il~~l~~-~~~~~~~ll~al~ei~~~~~~ 919 (1207)
T d1u6gc_ 851 --QLELKSVILEAFS-SPSEEVKSAASYALGSISVG-------NLPEYLPFVLQEITS-QPKRQYLLLHSLKEIISSASV 919 (1207)
T ss_dssp --CTHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHH-------THHHHHHHHHHHHHS-CGGGHHHHHHHHHHHHHSSCS
T ss_pred --hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHh-------hHHHHhHHHHHHHhc-CchHHHHHHHHHHHHHHhcch
Confidence 0123455566665 68888889998888765321 111223334444443 346789888888887754333
Q ss_pred cchH-hhhccchhHHHhhccchhHHHHHHHHHHHhhccCCCccccchhhcccchHHHHHHHhccCCcHHHHHHHHHHHHH
Q 000145 1296 KDSD-LAGQAVPPLVDMLSAASECELEVALVALVKLTSGNTSKACLLTDIDGNLLESLYKILSSNSSLELKRNAAELCFI 1374 (2054)
Q Consensus 1296 ~~~~-~a~~~~~~l~~~~~~~~~~~~~~~~~al~kl~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~a~l~~~ 1374 (2054)
.... ...+.+..|+..+....+..+.++..+|=||..-++. ..+..+.+.|.+ .+...+..+...++-
T Consensus 920 ~~~~~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~----------~~lp~L~~~l~~-~~~~~r~~ai~~l~~ 988 (1207)
T d1u6gc_ 920 VGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE----------TLLPRLKGYLIS-GSSYARSSVVTAVKF 988 (1207)
T ss_dssp TTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG----------GTHHHHTTTSSS-SCHHHHHHHHHHTGG
T ss_pred hhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH----------HHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3222 2344455666777888888999999999888544432 356777888877 556678999999998
Q ss_pred HhcCcccccCccccchhhhhhhhhcCChhHHHHHHHHHHHhhhhh
Q 000145 1375 MFGNAKIIANPIASECIQPLISLMQSDLSIVVESAVCAFERLLDD 1419 (2054)
Q Consensus 1375 l~~~~~i~~~~~a~~~~~pli~l~~s~~~~~~~~~~~~~~~ll~~ 1419 (2054)
++.+..-.-.|--..+|.|++..|..+...+..++..+|..++..
T Consensus 989 ~~~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~ 1033 (1207)
T d1u6gc_ 989 TISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHN 1033 (1207)
T ss_dssp GCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 888765444455678899999999999999999999999998753
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=6.6e-14 Score=160.90 Aligned_cols=199 Identities=16% Similarity=0.154 Sum_probs=177.5
Q ss_pred ccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHH-hhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCc
Q 000145 94 RSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLS-LLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGV 172 (2054)
Q Consensus 94 ks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~-LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~ 172 (2054)
++.+.+.+..|+..|.+++.+.+++..+...|+++.++. +++++++++|..|+.+|.+++.+ ++..+..+.+.|+
T Consensus 27 ~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~----~~~~~~~~~~~~~ 102 (264)
T d1xqra1 27 QAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN----VAAIQEQVLGLGA 102 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT----CHHHHHHHHHTTH
T ss_pred cCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCc
Confidence 345678899999999999999999999999999999985 67779999999999999999973 4567888999999
Q ss_pred HHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcc
Q 000145 173 VPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASLLARLMLAFGDSIP 252 (2054)
Q Consensus 173 Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~ 252 (2054)
+|.|++++.+.. +..++..++++|.+++.+.+..+..+.+.||++.|+.++.+++..++..++.+|++++..+++.+.
T Consensus 103 i~~Lv~lL~~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~ 180 (264)
T d1xqra1 103 LRKLLRLLDRDA--CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG 180 (264)
T ss_dssp HHHHHHHHHHCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred hHHHHHHhhcCC--CHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHH
Confidence 999999997543 356899999999999999988889999999999999999999999999999999999988888889
Q ss_pred hhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHh
Q 000145 253 TVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVA 299 (2054)
Q Consensus 253 ~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~e 299 (2054)
.+.+.|+++.|+.++.+ .+..++..+..+|.+|+.+++..+..+..
T Consensus 181 ~~~~~~~v~~L~~lL~~-~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 226 (264)
T d1xqra1 181 TLCSMGMVQQLVALVRT-EHSPFHEHVLGALCSLVTDFPQGVRECRE 226 (264)
T ss_dssp HHHHTTHHHHHHHHHTS-CCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999984 56789999999999999887777666654
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=1.2e-12 Score=174.07 Aligned_cols=392 Identities=14% Similarity=0.114 Sum_probs=234.9
Q ss_pred HHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCC--hhHHHHH
Q 000145 477 QLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHS--EDIRACV 554 (2054)
Q Consensus 477 p~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~s--d~~r~~I 554 (2054)
+.+.+.+.+++...|+.|+.+|+.++.+..+...... ...++.|+..+++.++.+|..++++|+.++... ......
T Consensus 398 ~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~- 475 (888)
T d1qbkb_ 398 PLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY- 475 (888)
T ss_dssp HHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-
T ss_pred HHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-
Confidence 3444566777888999999999988764322111111 235677888889999999999999999886411 111111
Q ss_pred HHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-------hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcc--
Q 000145 555 ESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-------SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQ-- 625 (2054)
Q Consensus 555 ~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~-- 625 (2054)
-...++.++..+.+.++.++..++++|.++..... ...++.+...+...+......+..+++.+......
T Consensus 476 -~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~ 554 (888)
T d1qbkb_ 476 -LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL 554 (888)
T ss_dssp -TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGG
T ss_pred -hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccc
Confidence 14567888888899999999999999999986632 23456677777777777777777788777532211
Q ss_pred --hHHHHhhhhcccchHHHHHHhcc--CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHh------------c
Q 000145 626 --EDLVQKGSAANKGLRSLVQVLNS--SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLL------------T 689 (2054)
Q Consensus 626 --~d~~~~~l~~~GaI~~LV~LLks--~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL------------~ 689 (2054)
++... ..++.+...... .++........++..+.....+...... ....+.++.++ .
T Consensus 555 ~~~~~~~------~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~ 627 (888)
T d1qbkb_ 555 NKPEYIQ------MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYC-EPVYQRCVNLVQKTLAQAMLNNAQ 627 (888)
T ss_dssp CSHHHHH------HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHH------HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11111 123344443322 1222233344455554432111110000 00111111111 1
Q ss_pred -----cCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC-C-hHHHHHHH
Q 000145 690 -----SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS-D-PDIAAEVL 762 (2054)
Q Consensus 690 -----dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~-~-~e~r~~Iv 762 (2054)
..+......+...+..+...... .....+.....++.+...+.+.+++++..|..+++.++. . +.....+
T Consensus 628 ~~~~~~~~~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l- 704 (888)
T d1qbkb_ 628 PDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI- 704 (888)
T ss_dssp TTTSCCCCTHHHHHHHHHHHHHHHHHTT--TTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhh--hhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-
Confidence 12334555566666666542222 222223334456667888899999999999999998864 2 2211111
Q ss_pred hcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhc
Q 000145 763 LEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLART 842 (2054)
Q Consensus 763 ~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~ 842 (2054)
+..++.+...+.+....++.+|+|+++.|+..- ++.+...+ ...+..|+..++..+.....+..+..++|.++..
T Consensus 705 -~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~--~~~~~py~--~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~ 779 (888)
T d1qbkb_ 705 -ADFMPILGTNLNPEFISVCNNATWAIGEISIQM--GIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYV 779 (888)
T ss_dssp -HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHT--GGGGGGGS--HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHH--HHHhhhhH--HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH
Confidence 235667777788888899999999999998753 22222111 4578899999987776666678888899988753
Q ss_pred ccCCCccCCcccccccCCCchHHHHHhhhc-CChhHHHHHHHHHHHhhccCCc
Q 000145 843 KQGLNFTYPPWAALAEVPSSIEPLVCCLAE-GPPPLQDKAIEILSRLCGDQPA 894 (2054)
Q Consensus 843 ~~~~~~i~~~~~~~~~~~~~L~~Lv~ll~~-~~~~vq~~Ai~iL~~L~~~~~~ 894 (2054)
.+. ...| -.+..++++...+.. ++..-+..|...+.+++..+|.
T Consensus 780 ~p~--~~~~------~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~ 824 (888)
T d1qbkb_ 780 CPQ--EVAP------MLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 824 (888)
T ss_dssp CHH--HHGG------GGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGG
T ss_pred CHH--HHHh------hHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcH
Confidence 211 1100 012234444444443 3445678899999999988775
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=7.8e-07 Score=114.26 Aligned_cols=763 Identities=14% Similarity=0.125 Sum_probs=379.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhccCchh
Q 000145 40 TVAKFLEQLHANMSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCKDEDL 117 (2054)
Q Consensus 40 ~V~qlIe~L~~ssss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL~~Ls~~ee~ 117 (2054)
.+.+++...- .+.++..|..|-..|.++..++. .+.+..|...+.+. +..+|..|+-.|++.......
T Consensus 5 ~~~~~L~~~~-~s~d~~~r~~Ae~~L~~~~~~~~---------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~ 74 (861)
T d2bpta1 5 EFAQLLENSI-LSPDQNIRLTSETQLKKLSNDNF---------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDS 74 (861)
T ss_dssp HHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSH
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccc
Confidence 4555554431 24577889999999988876541 34677888888764 578888888888775432111
Q ss_pred --HHH----HHh-------cCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCC
Q 000145 118 --RLK----VLL-------GGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKN 184 (2054)
Q Consensus 118 --r~~----v~~-------~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s 184 (2054)
... ... ...-..+++.+.++++.+|..++.++..++..+. +.+. . ...++.|++.+.+.+
T Consensus 75 ~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~---p~~~--w--peli~~L~~~~~s~~ 147 (861)
T d2bpta1 75 VKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIEL---PHGA--W--PELMKIMVDNTGAEQ 147 (861)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG---GGTC--C--HHHHHHHHHHTSTTS
T ss_pred hhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC---CcCc--h--HHHHHHHHHHhcCCC
Confidence 000 000 0123566777888899999999999999985210 0000 0 026777888876554
Q ss_pred CCChhHHHHHHHHHHHHhcCCCchhHHHHhh--CChHHHHhhhc--cCCHHHHHHHHHHHHHHHhhcCCC-cchhcccch
Q 000145 185 KQDNVVQGFVTGALRNLCGDKDGYWRATLEA--GGVDIIVGLLS--SDNAAAQSNAASLLARLMLAFGDS-IPTVIDSGA 259 (2054)
Q Consensus 185 ~~d~~V~e~Al~aL~nL~~~~e~r~~aI~ea--GGI~~LV~LL~--s~s~evq~~A~~aL~nLs~~~~~~-r~~i~~sGa 259 (2054)
...++..++.+|..+|.........+... .-+..+...+. ..+..++..++.++.++....+.. .........
T Consensus 148 --~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 225 (861)
T d2bpta1 148 --PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYL 225 (861)
T ss_dssp --CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHH
Confidence 34467788999999986543221111100 01223333332 345789999999998877321110 011112234
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHH-HhhcCCchhhhhhhhhhhhhhHHHHHHHHHh
Q 000145 260 VKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLI-GAIVAPSKECMQGQRGQALQGHATRALANIY 338 (2054)
Q Consensus 260 L~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LI-eLL~s~s~e~~q~~~~~~lqe~Al~ALanLs 338 (2054)
++.+...++ +.+..++..+..++..+....++.-..... ..+..+. ....+.+.. ++..+...+..++
T Consensus 226 ~~~l~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~~---------v~~~~~~~l~~l~ 294 (861)
T d2bpta1 226 MQVVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDK---------VASMTVEFWSTIC 294 (861)
T ss_dssp HHHHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHH---------HHHHHHHHHHHHH
T ss_pred HHhHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCccHH---------HHHHHHHHHHHHH
Confidence 555666666 567788988988888887642221111110 1122221 211222211 2233333333222
Q ss_pred cCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchh---hHHHHHHHHcCCCChhhHHHHHHHHH
Q 000145 339 GGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDAR---QIEDILVMLLKPHDNKLVQERVLEAM 415 (2054)
Q Consensus 339 Ggis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~---gIe~~Lv~LLk~~~~e~Vq~~Aa~AL 415 (2054)
..... ......... ........+... .+.+.+...+...+.+
T Consensus 295 ~~~~~------------------------~~~~~~~~~-~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~---------- 339 (861)
T d2bpta1 295 EEEID------------------------IAYELAQFP-QSPLQSYNFALSSIKDVVPNLLNLLTRQNED---------- 339 (861)
T ss_dssp HHHHH------------------------HHHHHHHCT-TCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC----------
T ss_pred HHHHH------------------------HHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------
Confidence 10000 000000000 000000000000 0001111111110000
Q ss_pred HHhhcChhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHH
Q 000145 416 ASLYGNIFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAV 495 (2054)
Q Consensus 416 ~~L~~n~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa 495 (2054)
....+...+..+..++..++...++. +. .-..+.+...+.+.+...+..+.
T Consensus 340 -------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~a~ 390 (861)
T d2bpta1 340 -------------------------PEDDDWNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITADNWRNREAAV 390 (861)
T ss_dssp --------------------------CCCCCHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTCSSHHHHHHHH
T ss_pred -------------------------ccchhHHHHHHHHHHHHHHHhhcchh---hh-hhhcchhhhhhhhHHHHHHHHHH
Confidence 00112233444445555444331111 10 01223344556677778888888
Q ss_pred HHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhh---ccCCh
Q 000145 496 QLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLL---KSGGP 572 (2054)
Q Consensus 496 ~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LL---kS~~~ 572 (2054)
.++..+..........-.-...++.++..+.+.++.+|..++++++.++... ...+.....++.++..+ .+.++
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~ 467 (861)
T d2bpta1 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSV---AESIDPQQHLPGVVQACLIGLQDHP 467 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH---GGGSCTTTTHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHh---chhhhhHHhhhhhhHHHHhccccCh
Confidence 8888887633222221122235678888899999999999999999886421 11111223344444322 24567
Q ss_pred hHHHHHHHHHHHHHHhhc-----------hhhHHHHHHHhcC--CCcchHHHHHHHHHHHHhhhcch--HHHHhhhhccc
Q 000145 573 KGQDASAMALTKLIRAAD-----------SATINQLLALLLG--DSPSSKAHVIKVLGHVLTMALQE--DLVQKGSAANK 637 (2054)
Q Consensus 573 evq~~AA~AL~nLs~~~e-----------~~~Ip~Lv~LL~~--~~~~V~~~a~~AL~~La~~~~~~--d~~~~~l~~~G 637 (2054)
.++..+++++.++..... ...+..++..... .+..++..+..++..+....... +..... ...
T Consensus 468 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l--~~~ 545 (861)
T d2bpta1 468 KVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASI--STF 545 (861)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--HHH
Confidence 888889998888875421 1234445554433 33456666777777765432221 111110 011
Q ss_pred chHHHHHHhccC-----------CHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC-CHHHHHHHHHHHHH
Q 000145 638 GLRSLVQVLNSS-----------NEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN-TQMVATQSARALGA 705 (2054)
Q Consensus 638 aI~~LV~LLks~-----------s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg-s~~vr~~AA~AL~n 705 (2054)
..+.+...+... ..+++..+..++..+....++..... ....++.+.+.+... +..++..+..+++.
T Consensus 546 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~ 624 (861)
T d2bpta1 546 VMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEKKDSAFIEDDVFYAISA 624 (861)
T ss_dssp HHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHSTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHH-HHHHHHHHhhhcccCCchhHHHHHHHHHHH
Confidence 122222222211 12334444455555544222221111 123456666666544 45678888888888
Q ss_pred hhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCC--CHHH
Q 000145 706 LSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEG--TSEG 781 (2054)
Q Consensus 706 Ls~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~--~~ev 781 (2054)
++..... ..... -..+++.|+..+.+.+..++..|+.+++.++. .......+ ...++.|.+.+.+. +..+
T Consensus 625 l~~~~~~--~~~~~--l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~--~~i~~~L~~~l~~~~~~~~~ 698 (861)
T d2bpta1 625 LAASLGK--GFEKY--LETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARREL 698 (861)
T ss_dssp HHHHHGG--GGHHH--HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTH
T ss_pred HHHHhhH--HHHHH--HHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhH--HHHHHHHHHHhCCCCCCHHH
Confidence 8763222 22211 12377888889999999999999999998864 22222222 24677788887654 5789
Q ss_pred HHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCc---------hhHHHHHHHHHHHhhc-ccCCCccCC
Q 000145 782 KKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNG---------TDVADALEVVALLART-KQGLNFTYP 851 (2054)
Q Consensus 782 r~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~---------~~~~~AL~ALa~La~~-~~~~~~i~~ 851 (2054)
|..+..+++.++..- ++.+...+ ...++-+...+....++. ..+..++.++..+... +.......|
T Consensus 699 k~~~~~~l~~i~~~~--~~~~~~~l--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p 774 (861)
T d2bpta1 699 KPAVLSVFGDIASNI--GADFIPYL--NDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFP 774 (861)
T ss_dssp HHHHHHHHHHHHHHH--GGGGHHHH--HHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGG
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHH--HHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999988642 11221111 223344444443222211 1123333333333221 111000110
Q ss_pred cccccccCCCchHHHHHhhhc----CChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccC
Q 000145 852 PWAALAEVPSSIEPLVCCLAE----GPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSS 919 (2054)
Q Consensus 852 ~~~~~~~~~~~L~~Lv~ll~~----~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~ 919 (2054)
. .+..+..+.....+ .+..+...++..+.+++...+..+....- .+.|+..+..+...+..
T Consensus 775 ~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 839 (861)
T d2bpta1 775 Y------VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFY-GQDWVIDYIKRTRSGQL 839 (861)
T ss_dssp G------HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGT-TCHHHHHHHHHHHHCSS
T ss_pred H------HHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHCcchhHHHHH-hhHHHHHHHHHHHhCcc
Confidence 0 11112222222222 34557778888888888766542222221 23667777776555443
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.3e-10 Score=154.14 Aligned_cols=666 Identities=15% Similarity=0.122 Sum_probs=359.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHH
Q 000145 87 PLFISILRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKI 166 (2054)
Q Consensus 87 p~LV~LLks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~ 166 (2054)
..++..|.++++.+|..++.++..+........ =-..++.|++.+.++++.+++.|+.+|..++.. . ...
T Consensus 91 ~~ll~~l~~~~~~vr~~~~~~i~~i~~~~~~~~---Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~-----~--~~~ 160 (888)
T d1qbkb_ 91 SECLNNIGDSSPLIRATVGILITTIASKGELQN---WPDLLPKLCSLLDSEDYNTCEGAFGALQKICED-----S--AEI 160 (888)
T ss_dssp HHHTTGGGCCCSSTTTTTTTTTHHHHTTTSSCS---STTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGG-----G--HHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccc---hHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-----h--HHH
Confidence 345566777777788778777777754211100 015678888888777777888899999988841 1 111
Q ss_pred HHH-------cCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHHhhCChHHHHhhhccCCHHHHHHHHHH
Q 000145 167 FVT-------EGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATLEAGGVDIIVGLLSSDNAAAQSNAASL 239 (2054)
Q Consensus 167 Iv~-------aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~s~evq~~A~~a 239 (2054)
+.. ...+|.+++.+.+.+ ..++..++.++..+............ ..-++.+...+.+++++++..++.+
T Consensus 161 ~~~~~~~~~~~~ll~~ll~~~~~~~---~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~vr~~~~~~ 236 (888)
T d1qbkb_ 161 LDSDVLDRPLNIMIPKFLQFFKHSS---PKIRSHAVACVNQFIISRTQALMLHI-DSFTENLFALAGDEEPEVRKNVCRA 236 (888)
T ss_dssp HHTC---CCSTTTTHHHHTGGGSSS---SCSSSTTTHHHHGGGGCCCSTTCSHH-HHCSHHHHTTSSCCCSSSTTHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhhCCC---HHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHhcCCcchHHHHHHHHH
Confidence 111 127888888887655 23566778888777665432211111 2256778888888889999999999
Q ss_pred HHHHHhhcCCCcchhcccchHHHHHHHhccCCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhc----CCch
Q 000145 240 LARLMLAFGDSIPTVIDSGAVKALVQLVGQNNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIV----APSK 315 (2054)
Q Consensus 240 L~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~----s~s~ 315 (2054)
|..+....++...... .+.++.++..++ +.+.+++..|...+..++.. ...+..+. ..++.++..+. ....
T Consensus 237 l~~l~~~~~~~l~~~l-~~i~~~~l~~~~-~~~e~v~~~a~ef~~~~~e~-~~~~~~~~--~~l~~l~~~l~~~~~~~~~ 311 (888)
T d1qbkb_ 237 LVMLLEVRMDRLLPHM-HNIVEYMLQRTQ-DQDENVALEACEFWLTLAEQ-PICKDVLV--RHLPKLIPVLVNGMKYSDI 311 (888)
T ss_dssp TTTTSCSCTTTTTTTT-TTTTTTTTTTTT-SSCHHHHHHHHHHHCCCCSG-GGGTTTTT--TSTTTTTTTTTTSSCCSST
T ss_pred HHHHHHHhHHHHHHHH-HHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHh-hhhHHHHH--HHHHHHHHHHHHHhhcchH
Confidence 8887744433222111 234455555555 46778887777766555442 21111111 12222222221 1111
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhc-----------CchhHHHH----hhhhcCCC----CchhhH-HHHHHHHHHHHHHh
Q 000145 316 ECMQGQRGQALQGHATRALANIYG-----------GMPALVVY----LGELSQSP----RLAAPV-ADIIGALAYALMVF 375 (2054)
Q Consensus 316 e~~q~~~~~~lqe~Al~ALanLsG-----------gis~lI~~----L~elL~s~----~~~~~i-A~~LgaL~~~~~~l 375 (2054)
+....................+.. .....+.. ..+..... ...+++ +.++..++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~------ 385 (888)
T d1qbkb_ 312 DIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLA------ 385 (888)
T ss_dssp THHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTT------
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHh------
Confidence 100000000000000000000000 00000000 00000000 000111 11111110
Q ss_pred hcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhh--cchHHHHHHHhccCCHHHHHHHH
Q 000145 376 EQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSH--AEAKKVLIGLITMATADVREYLI 453 (2054)
Q Consensus 376 ~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~--~g~I~~LI~LL~ssd~evq~~Aa 453 (2054)
.....+.+ ..+.+.+...+.+.+. ..|+.++.+++.+..... +.+.. ...++.++..+.+.++.+|..++
T Consensus 386 ---~~~~~~il--~~~l~~l~~~l~s~~~-~~reaa~~alg~i~eg~~--~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~ 457 (888)
T d1qbkb_ 386 ---NVYRDELL--PHILPLLKELLFHHEW-VVKESGILVLGAIAEGCM--QGMIPYLPELIPHLIQCLSDKKALVRSITC 457 (888)
T ss_dssp ---TTCCSSSH--HHHHHHHHHTTTSSSH-HHHHHHHHHHHHHTTTSH--HHHTTTHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred ---hhhHHHHH--HHHHHHHHHhhccchh-HHHHHHHHHhhhhhhhHH--HHhcccchhhhHHHHHhccCCCHHHHHHHH
Confidence 00111111 1233555666666554 488889999999865421 11111 24678899999999999999999
Q ss_pred HHHHHhcccCcc-chhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHH
Q 000145 454 LSLTKLCRREVG-IWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKA 532 (2054)
Q Consensus 454 ~AL~~Ls~~s~e-~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~V 532 (2054)
.+|+.++..... ..... -...++.++..+.++++.++..|+.+|.++.......-.... ...++.++..+...+.+.
T Consensus 458 ~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~ 535 (888)
T d1qbkb_ 458 WTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL-AYILDTLVFAFSKYQHKN 535 (888)
T ss_dssp HHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH-HHHHHHHHHHTTTCCHHH
T ss_pred HHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHHHhhhhHHH
Confidence 999988753111 11111 235678888888899999999999999999864322211111 123455666677777777
Q ss_pred HHHHHHHHHHHhcCC-hhH-HHHHHHcCChHHHHHhhc---cCChhHHHHHHHHHHHHHHhhchh-------hHHHHHHH
Q 000145 533 REVAAHVLWILCCHS-EDI-RACVESAGAVPAFLWLLK---SGGPKGQDASAMALTKLIRAADSA-------TINQLLAL 600 (2054)
Q Consensus 533 re~AA~aL~nLa~~s-d~~-r~~I~e~GaI~aLV~LLk---S~~~evq~~AA~AL~nLs~~~e~~-------~Ip~Lv~L 600 (2054)
+..+..++..+.... +.. +..+. ...++.+..... +.++ .......++..+....... ..+.++.+
T Consensus 536 ~~~~~~al~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~~-~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~ 613 (888)
T d1qbkb_ 536 LLILYDAIGTLADSVGHHLNKPEYI-QMLMPPLIQKWNMLKDEDK-DLFPLLECLSSVATALQSGFLPYCEPVYQRCVNL 613 (888)
T ss_dssp HHHHHHHHHHHHHHHGGGGCSHHHH-HHHHHHHHHHHTTSCTTCT-THHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchHHH-HHHHHHHHHHHHhcccchH-HHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHH
Confidence 777777776664310 000 00000 112333433222 2222 2333444555554332111 11111111
Q ss_pred h------------c-----CCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHH
Q 000145 601 L------------L-----GDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLAD 663 (2054)
Q Consensus 601 L------------~-----~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALan 663 (2054)
+ . ..+.+....+..+++.+...... .....+.....++.+...+++.++++|+.|..++..
T Consensus 614 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~--~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgd 691 (888)
T d1qbkb_ 614 VQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG--NIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGD 691 (888)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTT--TTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhh--hhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 1 1 11223334444555554432111 011112234457778888888999999999999999
Q ss_pred HhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcC--CHHHH
Q 000145 664 LFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS--SIDAA 741 (2054)
Q Consensus 664 Las~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~--d~~Vr 741 (2054)
++........... ...++.+.+.+.++...++..|+++++.++..... ..+. .-..+++.|+..+++. +..++
T Consensus 692 l~~~~~~~~~~~l-~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~--~~~p--y~~~il~~L~~il~~~~~~~~v~ 766 (888)
T d1qbkb_ 692 LTKACFQHVKPCI-ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI--EMQP--YIPMVLHQLVEIINRPNTPKTLL 766 (888)
T ss_dssp HHHHCGGGTGGGH-HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGG--GGGG--GSHHHHHHHHHHHTCTTCCHHHH
T ss_pred HHHhhhHHHHHHH-HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHH--Hhhh--hHHHHHHHHHHHHcCCCccHHHH
Confidence 8864443322222 24677777888888889999999999999863322 2222 1124777888888763 46688
Q ss_pred HHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHHHHcC-CCHHHHHHHHHHHHHhhhcCC
Q 000145 742 ETAVAALANLLS-DPDIAAEVLLEDVVSALTRVLAE-GTSEGKKNASRALHQLLKHFP 797 (2054)
Q Consensus 742 e~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~LL~s-~~~evr~~Aa~AL~nL~~~~~ 797 (2054)
+.++.+|+.|+. +|+.-... -+..++++...|.. .+.+-++.|...++++....|
T Consensus 767 ~n~~~~lgrl~~~~p~~~~~~-l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p 823 (888)
T d1qbkb_ 767 ENTAITIGRLGYVCPQEVAPM-LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 823 (888)
T ss_dssp HHHHHHHHHHHHHCHHHHGGG-GGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHCHHHHHhh-HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc
Confidence 999999999975 55422111 23467778877765 466678899999999988654
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=5.8e-07 Score=116.12 Aligned_cols=769 Identities=14% Similarity=0.078 Sum_probs=383.3
Q ss_pred CCCHHHHHHHHHHHHHHHhhcHHHHHHHhhhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhcc-Cc-hhHHHHH-----
Q 000145 52 MSSPQERELITMRILTIAKAKKEARLLIGSHAQAMPLFISILRSG--TPLAKVNVAATLSVLCK-DE-DLRLKVL----- 122 (2054)
Q Consensus 52 sss~~ere~AL~~L~~La~~~d~ar~~I~~~aGgVp~LV~LLks~--s~evr~~AA~vL~~Ls~-~e-e~r~~v~----- 122 (2054)
+.+.+.|..|-..|..+...+ ..|.+..|...+.+. +..+|..|+-.|++.-. .. ..+....
T Consensus 12 s~d~~~r~~Ae~~L~~~~~~~---------~~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~ 82 (876)
T d1qgra_ 12 SPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHhcC---------hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhccccc
Confidence 467788999999998887653 135678888888665 46789888888877532 21 1111100
Q ss_pred -----hcCChHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHH
Q 000145 123 -----LGGCIPPLLSLLKSESTDTRKAAAEALYEVSSGGLSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGA 197 (2054)
Q Consensus 123 -----~~GaIp~LV~LL~sed~eVr~aAa~AL~nLS~~~~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~a 197 (2054)
.......+++.+.+++. .+..++.++..++...- +.+ . =.+.+|.|.+.+.+++ ....++..++.+
T Consensus 83 i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~---p~~--~--Wpeli~~L~~~l~~~~-~~~~~~~~~l~~ 153 (876)
T d1qgra_ 83 IDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEI---PVN--Q--WPELIPQLVANVTNPN-STEHMKESTLEA 153 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHG---GGT--C--CTTHHHHHHHHHHCTT-CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHC---Ccc--c--cHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 01223567777777553 45567788888775210 000 0 0247899999887654 334577788999
Q ss_pred HHHHhcCCCchhHHHHhhCChHHHHhhhccC--CHHHHHHHHHHHHHHHhhcCCC-cchhcccchHHHHHHHhccCCChh
Q 000145 198 LRNLCGDKDGYWRATLEAGGVDIIVGLLSSD--NAAAQSNAASLLARLMLAFGDS-IPTVIDSGAVKALVQLVGQNNDIS 274 (2054)
Q Consensus 198 L~nL~~~~e~r~~aI~eaGGI~~LV~LL~s~--s~evq~~A~~aL~nLs~~~~~~-r~~i~~sGaL~~LL~LL~s~~d~~ 274 (2054)
|..+|..-......-.-...++.++..+.+. +.+++..++.++.+........ .......-.++.+...+. +.+..
T Consensus 154 l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~ 232 (876)
T d1qgra_ 154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-CPDTR 232 (876)
T ss_dssp HHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT-CSSHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc-CCCHH
Confidence 9999864322111111122466777777554 4678888888887766321100 001111123444555555 56778
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCC
Q 000145 275 VRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQS 354 (2054)
Q Consensus 275 Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s 354 (2054)
++..+..++..+....++.-.........+.+.....+...+ +...+...+..++.......
T Consensus 233 v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~--------- 294 (876)
T d1qgra_ 233 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDE---------VALQGIEFWSNVCDEEMDLA--------- 294 (876)
T ss_dssp HHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHH---------HHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHH---------HHHHHHHHHHHHHHHHHHHH---------
Confidence 898999888888764322211212122222233333332211 22223332222221000000
Q ss_pred CCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchH
Q 000145 355 PRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAK 434 (2054)
Q Consensus 355 ~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I 434 (2054)
.... ..... ... ....... ....... ..+
T Consensus 295 -----------~~~~--~~~~~-~~~--~~~~~~~-----------------~~~~~~~------------------~l~ 323 (876)
T d1qgra_ 295 -----------IEAS--EAAEQ-GRP--PEHTSKF-----------------YAKGALQ------------------YLV 323 (876)
T ss_dssp -----------HHHH--HHHHH-SSC--CSSCCCC-----------------HHHHHHH------------------HHH
T ss_pred -----------HHhh--HHHHh-hhh--HHHHHHH-----------------HHHHHHH------------------HHH
Confidence 0000 00000 000 0000000 0000000 001
Q ss_pred HHHHHHhc-------cCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccc
Q 000145 435 KVLIGLIT-------MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDD 507 (2054)
Q Consensus 435 ~~LI~LL~-------ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e 507 (2054)
+.+...+. ..+...+..+..++..++..... .+. ...++.+.+.+.+++...++.++..+..+......
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~---~~~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~ 399 (876)
T d1qgra_ 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 399 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH
T ss_pred HhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh---hhh-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhH
Confidence 11111111 11223455555666555543111 111 12334455666777778888888888877653222
Q ss_pred hhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCCh----HHHHHhhccCChhHHHHHHHHHH
Q 000145 508 SKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAV----PAFLWLLKSGGPKGQDASAMALT 583 (2054)
Q Consensus 508 ~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI----~aLV~LLkS~~~evq~~AA~AL~ 583 (2054)
....-.-...++.+...+.++++.+|..+++++..++..... .......+ +.++..+ ++++.++..+++++.
T Consensus 400 ~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l-~~~~~v~~~~~~~l~ 475 (876)
T d1qgra_ 400 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE---AAINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFS 475 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG---GTSSTTTHHHHHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcch---hhhhHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence 221222234667888889999999999999999988652211 01112223 3344444 357889999999999
Q ss_pred HHHHhhc---------------------hhhHHHHHHHhcCC---CcchHHHHHHHHHHHHhhhcc--hHHHHhhhhccc
Q 000145 584 KLIRAAD---------------------SATINQLLALLLGD---SPSSKAHVIKVLGHVLTMALQ--EDLVQKGSAANK 637 (2054)
Q Consensus 584 nLs~~~e---------------------~~~Ip~Lv~LL~~~---~~~V~~~a~~AL~~La~~~~~--~d~~~~~l~~~G 637 (2054)
++..... ...++.+...+... ...++..+.+++..+...... .+..... -..
T Consensus 476 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~ 553 (876)
T d1qgra_ 476 SLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKT--TLV 553 (876)
T ss_dssp HHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhhhhhHHHHHHHHH--HHH
Confidence 9875421 12345566666532 334566666666665433221 1111111 011
Q ss_pred chHHHHHHhccC------C-----HHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc--CCHHHHHHHHHHHH
Q 000145 638 GLRSLVQVLNSS------N-----EENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS--NTQMVATQSARALG 704 (2054)
Q Consensus 638 aI~~LV~LLks~------s-----~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d--gs~~vr~~AA~AL~ 704 (2054)
.++.+...+... . .+.+.....++..+..........-.....++.+.+++.. ++..++..+..++.
T Consensus 554 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~ 633 (876)
T d1qgra_ 554 IMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVS 633 (876)
T ss_dssp HHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 122233333211 1 1223334444555443211111111123445666666653 45678888899998
Q ss_pred HhhCCCCcccchhHHHHhcCChhhHHhhhhcC-CHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC--CHHH
Q 000145 705 ALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTS-SIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG--TSEG 781 (2054)
Q Consensus 705 nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~-d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~--~~ev 781 (2054)
.+...... .... .-...++.+...+.+. +++++..|+..++.+.......-.-.....++.+.+.+.+. ++.+
T Consensus 634 ~l~~~~~~--~~~~--~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~ 709 (876)
T d1qgra_ 634 TLVEVLGG--EFLK--YMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSV 709 (876)
T ss_dssp HHHHHHGG--GGGG--GHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGG
T ss_pred HHHHHcch--hhHH--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHH
Confidence 88752222 1111 1123667777777764 57899999999988864222111112234677788888654 5789
Q ss_pred HHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCC-CchhH--------HHHHHHHHHHh-hcccCCCccCC
Q 000145 782 KKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDM-NGTDV--------ADALEVVALLA-RTKQGLNFTYP 851 (2054)
Q Consensus 782 r~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~-~~~~~--------~~AL~ALa~La-~~~~~~~~i~~ 851 (2054)
|..+.++++.++..- ++.+...+ ...++.+....+...+ ..... ...+.....+- ..+.......+
T Consensus 710 k~~~~~~i~~i~~~~--~~~~~~yl--~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~ 785 (876)
T d1qgra_ 710 KPQILSVFGDIALAI--GGEFKKYL--EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHP 785 (876)
T ss_dssp HHHHHHHHHHHHHHH--GGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCG
T ss_pred HHHHHHHHHHHHHHH--hHhhHHHH--HHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 999999999988642 11111111 1123333333321111 11111 22222222111 11111111111
Q ss_pred cccccccCCCchHHHHHhh------hcCChhHHHHHHHHHHHhhccCCchhhhhhhcccccHHHHHHHHhcccCceeehh
Q 000145 852 PWAALAEVPSSIEPLVCCL------AEGPPPLQDKAIEILSRLCGDQPAVLGDFLMARSSSIGALADRIMHSSSLEVRVG 925 (2054)
Q Consensus 852 ~~~~~~~~~~~L~~Lv~ll------~~~~~~vq~~Ai~iL~~L~~~~~~~~~~~~~~~~~~i~~La~~il~s~~~ev~~~ 925 (2054)
.+. ....+++.+..+. ...+..+...|+..|..++...+.-...... ...||..++.+-..++..+.|..
T Consensus 786 ~~~---~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~-~~~~v~~ll~~~~~s~~~~~~~~ 861 (876)
T d1qgra_ 786 DVM---LVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE-ARPMIHELLTEGRRSKTNKAKTL 861 (876)
T ss_dssp GGG---GSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH-TSHHHHHHHHHHHHCSCHHHHHH
T ss_pred hHH---HHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHhCCCHHHHHH
Confidence 111 1122445544332 2344557888888898887655431122222 33688889999888888888877
Q ss_pred hhHHH
Q 000145 926 GAALL 930 (2054)
Q Consensus 926 ~~~~~ 930 (2054)
+.++.
T Consensus 862 a~~~~ 866 (876)
T d1qgra_ 862 ARWAT 866 (876)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.11 E-value=9.3e-07 Score=113.50 Aligned_cols=579 Identities=13% Similarity=0.124 Sum_probs=315.4
Q ss_pred HHHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhcc-CCChhHHHHHHHHHHHHhhcc--------
Q 000145 220 IIVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQ-NNDISVRASAADALEALSSKS-------- 290 (2054)
Q Consensus 220 ~LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s-~~d~~Vr~~Aa~aL~nLs~~s-------- 290 (2054)
.|...+.++++++|..|-..|..+...+ ..+.+..|+.++.+ +.+..+|..|.-.|++.....
T Consensus 9 ~L~~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~ 80 (861)
T d2bpta1 9 LLENSILSPDQNIRLTSETQLKKLSNDN--------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQF 80 (861)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhH
Confidence 3444556778899999988888776321 13577788888853 445678888888888765321
Q ss_pred ---------HHHHHHHHhcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHh------cCchhHHHHhhhhcCCC
Q 000145 291 ---------IKAKKAVVAADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY------GGMPALVVYLGELSQSP 355 (2054)
Q Consensus 291 ---------~e~Rk~I~eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLs------Ggis~lI~~L~elL~s~ 355 (2054)
++.+..+ -..+++.+.++++. ++..+..+++.++ +..|.++..|.+.+.++
T Consensus 81 ~~~~~~~i~~~~~~~i-----k~~ll~~l~~~~~~---------vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~ 146 (861)
T d2bpta1 81 AQRWITQVSPEAKNQI-----KTNALTALVSIEPR---------IANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAE 146 (861)
T ss_dssp HHHHHHHSCHHHHHHH-----HHHHHHHHTCSSHH---------HHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTT
T ss_pred HhhhHhcCCHHHHHHH-----HHHHHHHHcCCCHH---------HHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCC
Confidence 2222222 24556666665533 4445555565553 34677888888887765
Q ss_pred Cchh---hHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHH----HcCCCChhhHHHHHHHHHHHhhcCh--hhhH
Q 000145 356 RLAA---PVADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVM----LLKPHDNKLVQERVLEAMASLYGNI--FLSQ 426 (2054)
Q Consensus 356 ~~~~---~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~----LLk~~~~e~Vq~~Aa~AL~~L~~n~--~~~~ 426 (2054)
+... ....+++.++... .... ..+. ..+.+.|.. +........++..+..++.++...- ....
T Consensus 147 ~~~~~~~~al~~l~~i~e~~------~~~~-~~~~-~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~ 218 (861)
T d2bpta1 147 QPENVKRASLLALGYMCESA------DPQS-QALV-SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMER 218 (861)
T ss_dssp SCHHHHHHHHHHHHHHHHTS------STTS-STTG-GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTS
T ss_pred CcHHHHHHHHHHHHHHHHHh------hHHH-HHHH-HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHh
Confidence 5432 2233444443211 1111 1111 122233333 3334444568899999998875432 1111
Q ss_pred HHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHH-HHHhhhcCCChhhhHHHHHHHHHHhhhc
Q 000145 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQ-LLISLLGLSSEQHQEYAVQLIAILTEQV 505 (2054)
Q Consensus 427 ~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp-~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s 505 (2054)
.......++.+...+.+.+++++..+...|..+....++.-..... ..+. .+....++.++.++..+...+..++...
T Consensus 219 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~-~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~ 297 (861)
T d2bpta1 219 EGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPNDKVASMTVEFWSTICEEE 297 (861)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 2222345677888889999999999999998887653322111111 1122 2334555667777777777666554321
Q ss_pred cchhhHHH---------------------------------------------------------hhCCCchHh----hh
Q 000145 506 DDSKWAIT---------------------------------------------------------AAGGIPPLV----QL 524 (2054)
Q Consensus 506 ~e~r~~I~---------------------------------------------------------~aGaIp~LV----~L 524 (2054)
........ ....++.+. ..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 377 (861)
T d2bpta1 298 IDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQN 377 (861)
T ss_dssp HHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhh
Confidence 10000000 000111111 12
Q ss_pred hhcCCHHHHHHHHHHHHHHhcCChhH-HHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----hhhHHH--
Q 000145 525 LEAGSQKAREVAAHVLWILCCHSEDI-RACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----SATINQ-- 596 (2054)
Q Consensus 525 L~s~s~~Vre~AA~aL~nLa~~sd~~-r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-----~~~Ip~-- 596 (2054)
+.+.+...+..+..++..+....... .... -...++.++..+.+.++.++..++++++.++.... ...++.
T Consensus 378 ~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~-l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll 456 (861)
T d2bpta1 378 ITADNWRNREAAVMAFGSIMDGPDKVQRTYY-VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVV 456 (861)
T ss_dssp TTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhh
Confidence 23345566666666666665432221 1111 13457788889999999999999999999876521 222333
Q ss_pred --HHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhcc--CCHHHHHHHHHHHHHHhhcChhhh
Q 000145 597 --LLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNS--SNEENQEYAASVLADLFSMRQDIC 672 (2054)
Q Consensus 597 --Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks--~s~evre~Aa~ALanLas~~~e~r 672 (2054)
+...+ .+++.+...+..++..+.............-.....+..++..... .+..++..+..++..+....++..
T Consensus 457 ~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~ 535 (861)
T d2bpta1 457 QACLIGL-QDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV 535 (861)
T ss_dssp HHHHHHH-TSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHhcc-ccChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333 3455566666666666543211100000000011224445554433 356788888888888865433332
Q ss_pred hhhhh---CCCHHHHHHHhccCC-----------HHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc-CC
Q 000145 673 GSLAT---DEIVNPCMRLLTSNT-----------QMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT-SS 737 (2054)
Q Consensus 673 ~~Iv~---~g~V~~Lv~LL~dgs-----------~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s-~d 737 (2054)
..... ....+.+...+.... ..++.....++..+....+. .... .....+..+...+.. .+
T Consensus 536 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~--~~~~--~~~~l~~~l~~~l~~~~~ 611 (861)
T d2bpta1 536 AETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEP--VADMLMGLFFRLLEKKDS 611 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGG--GHHHHHHHHHHHHHSTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchh--hHHH--HHHHHHHHHhhhcccCCc
Confidence 22111 112222222222111 12344444555555431111 1111 111244555555655 44
Q ss_pred HHHHHHHHHHHHHhhC--ChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHH
Q 000145 738 IDAAETAVAALANLLS--DPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTL 815 (2054)
Q Consensus 738 ~~Vre~Al~AL~NLa~--~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~L 815 (2054)
..+++.++.++++++. .+.....+ +..+|.|...+.+.++.++..|+.+++.++...+ +.+.... ...+..|
T Consensus 612 ~~v~~~~l~~l~~l~~~~~~~~~~~l--~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~--~~~~~~~--~~i~~~L 685 (861)
T d2bpta1 612 AFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLE--EDFRRYS--DAMMNVL 685 (861)
T ss_dssp GGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG--GGGHHHH--HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHH--HHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhH--HHhHhhH--HHHHHHH
Confidence 5678888888888864 22222222 2467888889999999999999999999987532 2222111 3467778
Q ss_pred HHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 816 VDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 816 V~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
++.+.+.+.+...+..++.+++.+..
T Consensus 686 ~~~l~~~~~~~~~k~~~~~~l~~i~~ 711 (861)
T d2bpta1 686 AQMISNPNARRELKPAVLSVFGDIAS 711 (861)
T ss_dssp HHHHHCTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 88887666666668889999998875
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=7.8e-09 Score=116.30 Aligned_cols=250 Identities=11% Similarity=0.075 Sum_probs=192.3
Q ss_pred cHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHH
Q 000145 475 GIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACV 554 (2054)
Q Consensus 475 gIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I 554 (2054)
..+.|+++|+++++.+|..|+.+|..++. ..+++.|++++++.++.+|..|+.+|..+....... ..
T Consensus 20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~-~~- 86 (276)
T d1oyza_ 20 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-DN- 86 (276)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-HH-
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-cc-
Confidence 45678999999999999999999988764 235789999999999999999999999996532221 11
Q ss_pred HHcCChHHHH-HhhccCChhHHHHHHHHHHHHHHhhc---hhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHH
Q 000145 555 ESAGAVPAFL-WLLKSGGPKGQDASAMALTKLIRAAD---SATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQ 630 (2054)
Q Consensus 555 ~e~GaI~aLV-~LLkS~~~evq~~AA~AL~nLs~~~e---~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~ 630 (2054)
.++.+. .++++.++.++..++.+|+++..... ...++.+...+.+.++.++..+..+++..
T Consensus 87 ----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~----------- 151 (276)
T d1oyza_ 87 ----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVI----------- 151 (276)
T ss_dssp ----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------
T ss_pred ----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHHHHHHHHHHhcCcchHHHHHHHHHHhhc-----------
Confidence 233344 35788999999999999999986532 34677788888888888887776666532
Q ss_pred hhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCC
Q 000145 631 KGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPT 710 (2054)
Q Consensus 631 ~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~ 710 (2054)
.+...++.+..++...+..++..+..++..+.... ....+.+...+.+.+..++..+..+++.+..
T Consensus 152 ---~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~-- 217 (276)
T d1oyza_ 152 ---NDKATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD-- 217 (276)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--
T ss_pred ---chHHHHHHHHHhcccccchhhhhHHHHHHhhhccc---------cccchhhhhhhhhhhhhhhhhhccccchhhh--
Confidence 23456888999999999999998888888776532 2345567788888999999999999988742
Q ss_pred CcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHH
Q 000145 711 KTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEG-TSEGKKNASRAL 789 (2054)
Q Consensus 711 ~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~-~~evr~~Aa~AL 789 (2054)
..+++.|++.+.++ +++..++.+|+.+. +++.++.|..++.+. +.+++..|+.+|
T Consensus 218 ------------~~~~~~L~~~l~d~--~vr~~a~~aL~~ig----------~~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 218 ------------KRVLSVLCDELKKN--TVYDDIIEAAGELG----------DKTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp ------------GGGHHHHHHHHTSS--SCCHHHHHHHHHHC----------CGGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred ------------hhhHHHHHHHhCCh--HHHHHHHHHHHHcC----------CHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 23678888888754 58889999998774 456889999988764 788999999887
Q ss_pred H
Q 000145 790 H 790 (2054)
Q Consensus 790 ~ 790 (2054)
.
T Consensus 274 ~ 274 (276)
T d1oyza_ 274 K 274 (276)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.00 E-value=1.1e-08 Score=114.92 Aligned_cols=253 Identities=15% Similarity=0.073 Sum_probs=192.5
Q ss_pred CCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhh--chhh
Q 000145 516 GGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAA--DSAT 593 (2054)
Q Consensus 516 GaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~--e~~~ 593 (2054)
.....|+++|+++++.+|..|+.+|..+.. ..+++.|+.+++++++.++..++.+|..+.... ....
T Consensus 19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~ 87 (276)
T d1oyza_ 19 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV 87 (276)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch
Confidence 456678999999999999999999998853 236899999999999999999999999886432 2234
Q ss_pred HHHHHH-HhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhh
Q 000145 594 INQLLA-LLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDIC 672 (2054)
Q Consensus 594 Ip~Lv~-LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r 672 (2054)
.+.+.. ++++.++.++..+..+|+.+...... .....++.+...+.+.++.++..++.++..+..
T Consensus 88 ~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~--------~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~------ 153 (276)
T d1oyza_ 88 FNILNNMALNDKSACVRATAIESTAQRCKKNPI--------YSPKIVEQSQITAFDKSTNVRRATAFAISVIND------ 153 (276)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG--------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHccccch--------hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch------
Confidence 444444 56788889999999999887543211 112357778888888899999988888776543
Q ss_pred hhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhh
Q 000145 673 GSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLL 752 (2054)
Q Consensus 673 ~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa 752 (2054)
...++.+..++.+.+..++..+..++........ ..++.++..+.+.+..++..+..++..+.
T Consensus 154 -----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 216 (276)
T d1oyza_ 154 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDNS------------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 216 (276)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH------------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHhcccccchhhhhHHHHHHhhhcccc------------ccchhhhhhhhhhhhhhhhhhccccchhh
Confidence 5678889999999999999998888887764211 24566788888999999999999998764
Q ss_pred CChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHH
Q 000145 753 SDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADA 832 (2054)
Q Consensus 753 ~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~A 832 (2054)
.+.+++.|++.+.+ +.+|..++++|+.++. ...++.|..++...+ +...+..|
T Consensus 217 ----------~~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~--------------~~~~~~L~~~l~~~~-d~~vr~~A 269 (276)
T d1oyza_ 217 ----------DKRVLSVLCDELKK--NTVYDDIIEAAGELGD--------------KTLLPVLDTMLYKFD-DNEIITSA 269 (276)
T ss_dssp ----------CGGGHHHHHHHHTS--SSCCHHHHHHHHHHCC--------------GGGHHHHHHHHTTSS-CCHHHHHH
T ss_pred ----------hhhhHHHHHHHhCC--hHHHHHHHHHHHHcCC--------------HHHHHHHHHHHccCC-CHHHHHHH
Confidence 35678899988875 4589999999998874 246788888887544 44567888
Q ss_pred HHHHH
Q 000145 833 LEVVA 837 (2054)
Q Consensus 833 L~ALa 837 (2054)
+++|.
T Consensus 270 ~~~L~ 274 (276)
T d1oyza_ 270 IDKLK 274 (276)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 87763
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=0.00012 Score=93.98 Aligned_cols=625 Identities=13% Similarity=0.098 Sum_probs=331.2
Q ss_pred HccCCHHHHHHHHHHHHHhccCchhHHHHHhcCChHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCCCCChhHHHHH---
Q 000145 93 LRSGTPLAKVNVAATLSVLCKDEDLRLKVLLGGCIPPLLSLLKS--ESTDTRKAAAEALYEVSSGGLSDDHVGMKIF--- 167 (2054)
Q Consensus 93 Lks~s~evr~~AA~vL~~Ls~~ee~r~~v~~~GaIp~LV~LL~s--ed~eVr~aAa~AL~nLS~~~~nk~~~~re~I--- 167 (2054)
.-+++.+.|..|-..|..+..... .|.+..|.+++.+ .+..+|..|+-.|.|.-.. +........
T Consensus 10 ~~s~d~~~r~~Ae~~L~~~~~~~~-------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~---~~~~~~~~~~~~ 79 (876)
T d1qgra_ 10 TVSPDRLELEAAQKFLERAAVENL-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTS---KDPDIKAQYQQR 79 (876)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCC---SSHHHHHHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHhcCh-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc---cccchhhhhhcc
Confidence 346789999999999988753211 1567788888866 3788999999999987742 121111110
Q ss_pred -------HHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCC--CchhHHHHhhCChHHHHhhhccCC--HHHHHHH
Q 000145 168 -------VTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDK--DGYWRATLEAGGVDIIVGLLSSDN--AAAQSNA 236 (2054)
Q Consensus 168 -------v~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~--e~r~~aI~eaGGI~~LV~LL~s~s--~evq~~A 236 (2054)
.+..+-..+++.+.+++ . +...+..++..++... .+.|. +-++.+...+.+++ ...+..+
T Consensus 80 ~~~i~~~~k~~ik~~ll~~l~~~~-~---~~~~~a~~i~~i~~~~~p~~~Wp-----eli~~L~~~l~~~~~~~~~~~~~ 150 (876)
T d1qgra_ 80 WLAIDANARREVKNYVLHTLGTET-Y---RPSSASQCVAGIACAEIPVNQWP-----ELIPQLVANVTNPNSTEHMKEST 150 (876)
T ss_dssp HHTSCHHHHHHHHHHHHHHTTTCC-S---SSCHHHHHHHHHHHHHGGGTCCT-----THHHHHHHHHHCTTCCHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhcCCc-H---HHHHHHHHHHHHHHHHCCccccH-----HHHHHHHHHhcCCCCcHHHHHHH
Confidence 11223456777776543 1 2334566777776542 12232 24677888776543 5688889
Q ss_pred HHHHHHHHhhcCCCcchhcccchHHHHHHHhcc-CCChhHHHHHHHHHHHHhhccHHHHHHHHhcCCHHHHHHhhcCCch
Q 000145 237 ASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQ-NNDISVRASAADALEALSSKSIKAKKAVVAADGVPVLIGAIVAPSK 315 (2054)
Q Consensus 237 ~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s-~~d~~Vr~~Aa~aL~nLs~~s~e~Rk~I~eaggL~~LIeLL~s~s~ 315 (2054)
+.+|..++..-......-.....++.++..+.+ +.+..++..+..++.+........- .
T Consensus 151 l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~---~----------------- 210 (876)
T d1qgra_ 151 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANF---D----------------- 210 (876)
T ss_dssp HHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHH---T-----------------
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhh---h-----------------
Confidence 999988873211000000112344555555532 2234455555544444333200000 0
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHH
Q 000145 316 ECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAYALMVFEQKSGVDDEPFDARQIEDIL 395 (2054)
Q Consensus 316 e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~L 395 (2054)
...+ ...+.+.+
T Consensus 211 -------------------------------------------------------------------~~~~-~~~i~~~l 222 (876)
T d1qgra_ 211 -------------------------------------------------------------------KESE-RHFIMQVV 222 (876)
T ss_dssp -------------------------------------------------------------------SHHH-HHHHHHHH
T ss_pred -------------------------------------------------------------------HHHH-HHHHHHHH
Confidence 0000 00111333
Q ss_pred HHHcCCCChhhHHHHHHHHHHHhhcC-hhhhHHHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccc--------
Q 000145 396 VMLLKPHDNKLVQERVLEAMASLYGN-IFLSQWVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGI-------- 466 (2054)
Q Consensus 396 v~LLk~~~~e~Vq~~Aa~AL~~L~~n-~~~~~~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~-------- 466 (2054)
...+...+. .++..+..++..+... +..............+.....+..+++...+...+..++......
T Consensus 223 ~~~~~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 301 (876)
T d1qgra_ 223 CEATQCPDT-RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA 301 (876)
T ss_dssp HHHTTCSSH-HHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 334444433 3777777777777432 221111122234455566667777777777777776665321110
Q ss_pred --------hhhh----hccccHHHHHhhhcCC-------ChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhc
Q 000145 467 --------WEAI----GKREGIQLLISLLGLS-------SEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEA 527 (2054)
Q Consensus 467 --------r~~I----ve~ggIp~LV~LL~s~-------d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s 527 (2054)
.... .....++.+...+... +...+..+..++..++....+. +.. ..++.+.+.+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---~~~-~~~~~i~~~l~~ 377 (876)
T d1qgra_ 302 EQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVP-HVLPFIKEHIKN 377 (876)
T ss_dssp HHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GHH-HHHHHHHHHTTC
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---hhh-hhHHHHHHhhcc
Confidence 0000 0112233344433321 2236777778887777643221 111 122344455677
Q ss_pred CCHHHHHHHHHHHHHHhcCChh--HHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----hh----hHHH
Q 000145 528 GSQKAREVAAHVLWILCCHSED--IRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----SA----TINQ 596 (2054)
Q Consensus 528 ~s~~Vre~AA~aL~nLa~~sd~--~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-----~~----~Ip~ 596 (2054)
++...|+.+...++.+...... ....+ ...++.++..+.++++.++..++++++.++.... .. .++.
T Consensus 378 ~~~~~r~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 455 (876)
T d1qgra_ 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQC 455 (876)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHH
T ss_pred chHHHHHHHHHHHHhhhhhhhHHHHHHHH--HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHH
Confidence 8899999999999888653222 22222 4567888889999999999999999999986521 22 2344
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhhhcchHH-HH-------hhh--hcccchHHHHHHhccC---CHHHHHHHHHHHHH
Q 000145 597 LLALLLGDSPSSKAHVIKVLGHVLTMALQEDL-VQ-------KGS--AANKGLRSLVQVLNSS---NEENQEYAASVLAD 663 (2054)
Q Consensus 597 Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~-~~-------~~l--~~~GaI~~LV~LLks~---s~evre~Aa~ALan 663 (2054)
+...+. +++.++..+..++..+......... .. ..+ .-...++.+...+... ...++..+..++..
T Consensus 456 l~~~l~-~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 534 (876)
T d1qgra_ 456 LIEGLS-AEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLME 534 (876)
T ss_dssp HHHHTT-SCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHH
T ss_pred HHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHH
Confidence 444443 4567777777777776532110000 00 000 0012345555555443 45678888888887
Q ss_pred HhhcChhhhhhhhh---CCCHHHHHHHhccC------CH-----HHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhH
Q 000145 664 LFSMRQDICGSLAT---DEIVNPCMRLLTSN------TQ-----MVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPL 729 (2054)
Q Consensus 664 Las~~~e~r~~Iv~---~g~V~~Lv~LL~dg------s~-----~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~L 729 (2054)
+.....+.....+. ...++.+...+... .. ..+.....++..+...... ..... .....+..+
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~--~~~~~-~~~~i~~~l 611 (876)
T d1qgra_ 535 IVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH--QDALQ-ISDVVMASL 611 (876)
T ss_dssp HHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH--HHHHT-THHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcch--hhhhh-hHHHHHHHH
Confidence 76533222211111 12223333333211 11 1233344555555542111 11111 111244555
Q ss_pred Hhhhhc--CCHHHHHHHHHHHHHhhCC--hHHHHHHHhcCcHHHHHHHHcCC-CHHHHHHHHHHHHHhhhcCCCchhHhh
Q 000145 730 IKLAKT--SSIDAAETAVAALANLLSD--PDIAAEVLLEDVVSALTRVLAEG-TSEGKKNASRALHQLLKHFPVGDVLKG 804 (2054)
Q Consensus 730 v~LL~s--~d~~Vre~Al~AL~NLa~~--~e~r~~Iv~~g~I~~LV~LL~s~-~~evr~~Aa~AL~nL~~~~~~~e~i~~ 804 (2054)
..++.. .+..+++.++.+++.++.. +..... -+..++.+...+.+. +++++..|+.+++.+....+ ..+..
T Consensus 612 ~~~l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~--l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~--~~~~~ 687 (876)
T d1qgra_ 612 LRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKY--MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ--SNIIP 687 (876)
T ss_dssp HHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGG--HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG--GGGHH
T ss_pred HHHHhcCCCCcchHHHHHHHHHHHHHHcchhhHHH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhH--Hhhhh
Confidence 555543 4567888889898888641 111111 123567777777655 57899999999998876431 11111
Q ss_pred hhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhh
Q 000145 805 NAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLAR 841 (2054)
Q Consensus 805 ~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~ 841 (2054)
. ....+..++..+.+...+...+..++.+++.++.
T Consensus 688 ~--~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~ 722 (876)
T d1qgra_ 688 F--CDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp H--HHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH
T ss_pred h--HHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHH
Confidence 1 1456778888887766666678899999988874
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=7.8e-05 Score=87.93 Aligned_cols=399 Identities=12% Similarity=0.073 Sum_probs=213.0
Q ss_pred HHhhhccCCHHHHHHHHHHHHHHHhhcCCCcchhcccchHHHHHHHhccC-CChhHHHHHHHHHHHHhhccHHH-HHHHH
Q 000145 221 IVGLLSSDNAAAQSNAASLLARLMLAFGDSIPTVIDSGAVKALVQLVGQN-NDISVRASAADALEALSSKSIKA-KKAVV 298 (2054)
Q Consensus 221 LV~LL~s~s~evq~~A~~aL~nLs~~~~~~r~~i~~sGaL~~LL~LL~s~-~d~~Vr~~Aa~aL~nLs~~s~e~-Rk~I~ 298 (2054)
++.-+.+++.+++..|-..|..+...+ ..+.+..|+.++.+. .+..+|..|.-.|++........ .....
T Consensus 5 il~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~ 76 (458)
T d1ibrb_ 5 ILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQ 76 (458)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHh
Confidence 334445678899999999998877322 134677888888543 45678888888888776532211 11110
Q ss_pred ----------hcCCHHHHHHhhcCCchhhhhhhhhhhhhhHHHHHHHHHh------cCchhHHHHhhhhcCCCCchhh--
Q 000145 299 ----------AADGVPVLIGAIVAPSKECMQGQRGQALQGHATRALANIY------GGMPALVVYLGELSQSPRLAAP-- 360 (2054)
Q Consensus 299 ----------eaggL~~LIeLL~s~s~e~~q~~~~~~lqe~Al~ALanLs------Ggis~lI~~L~elL~s~~~~~~-- 360 (2054)
.......+++.+.+++.. .+ .+..+++.+. +..+..+..+.+.+.++.....
T Consensus 77 ~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~---------~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 146 (458)
T d1ibrb_ 77 QRWLAIDANARREVKNYVLQTLGTETYR-PS---------SASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMK 146 (458)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTTCCCSS-SC---------SHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHH
T ss_pred hhhccCCHHHHHHHHHHHHhccCCCcHH-HH---------HHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHH
Confidence 112234456666554421 11 1222222221 2345667777666655444222
Q ss_pred --HHHHHHHHHHHHHHhhcCCCCCCcccchhhHHHHHHHHcCCC-ChhhHHHHHHHHHHHhhcChh--hhHHHhhcchHH
Q 000145 361 --VADIIGALAYALMVFEQKSGVDDEPFDARQIEDILVMLLKPH-DNKLVQERVLEAMASLYGNIF--LSQWVSHAEAKK 435 (2054)
Q Consensus 361 --iA~~LgaL~~~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~-~~e~Vq~~Aa~AL~~L~~n~~--~~~~L~~~g~I~ 435 (2054)
+..+++.++... . . ..... ....+.+.+...+... ....++..+..++..+..... ...........+
T Consensus 147 ~~~l~~l~~~~~~~---~--~-~~~~~-~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 219 (458)
T d1ibrb_ 147 ESTLEAIGYICQDI---D--P-EQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 219 (458)
T ss_dssp HHHHHHHHHHHHHS---C--G-GGTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc---c--c-hhhhh-hHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHh
Confidence 223333332211 0 0 00111 1223445566666543 334588999999988864321 111222223456
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhh
Q 000145 436 VLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAA 515 (2054)
Q Consensus 436 ~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~a 515 (2054)
.+..++.+.+++++..+..+|..+....+..-.........+.+....++.++.++..++..+..++..... ......
T Consensus 220 ~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~--~~~~~~ 297 (458)
T d1ibrb_ 220 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD--LAIEAS 297 (458)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH--HHHHHC
T ss_pred hHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 777888888999999999999998765333221111222334455667788888999999998888763111 111111
Q ss_pred CCCchHh-hhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhc-------cCChhHHHHHHHHHHHHHH
Q 000145 516 GGIPPLV-QLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLK-------SGGPKGQDASAMALTKLIR 587 (2054)
Q Consensus 516 GaIp~LV-~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLk-------S~~~evq~~AA~AL~nLs~ 587 (2054)
....... ....... ........ .++.+...+. +++..++..+..++..++.
T Consensus 298 ~~~~~~~~~~~~~~~--~~~~~~~~-------------------l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~ 356 (458)
T d1ibrb_ 298 EAAEQGRPPEHTSKF--YAKGALQY-------------------LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 356 (458)
T ss_dssp CTTCSSSCSSCCCCC--HHHHHHHH-------------------HHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHH
T ss_pred hHHHhhhHHHHHHHH--HHHHHHHH-------------------HhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHH
Confidence 1110000 0000000 00000000 1111222111 1222344444444444432
Q ss_pred hhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhc
Q 000145 588 AADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSM 667 (2054)
Q Consensus 588 ~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~ 667 (2054)
. ... +... ..++.+.+.++++++.+|+.++.+|..++.+
T Consensus 357 ~----------------------------------~~~-~~~~------~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~ 395 (458)
T d1ibrb_ 357 C----------------------------------CED-DIVP------HVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 395 (458)
T ss_dssp H----------------------------------TTT-THHH------HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred h----------------------------------ccH-hhhh------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2 111 1111 1355666778888999999999999999863
Q ss_pred ChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhC
Q 000145 668 RQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSR 708 (2054)
Q Consensus 668 ~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~ 708 (2054)
..+..-.-.-...++.++..+++.++.+|..|+++|++++.
T Consensus 396 ~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~ 436 (458)
T d1ibrb_ 396 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 436 (458)
T ss_dssp SCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 22221111234678999999999999999999999999986
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=2.3e-05 Score=92.67 Aligned_cols=378 Identities=13% Similarity=0.088 Sum_probs=220.2
Q ss_pred HHHHHHcCCCChhhHHHHHHHHHHHhhcChhhhHHHhhcchHHHHHHHhccC--CHHHHHHHHHHHHHhcccCccch-hh
Q 000145 393 DILVMLLKPHDNKLVQERVLEAMASLYGNIFLSQWVSHAEAKKVLIGLITMA--TADVREYLILSLTKLCRREVGIW-EA 469 (2054)
Q Consensus 393 ~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~~n~~~~~~L~~~g~I~~LI~LL~ss--d~evq~~Aa~AL~~Ls~~s~e~r-~~ 469 (2054)
.+|..++.+ +. .++..|-..|-.+..+.. .+.+..+...+.+. +..++..|+..|.+.-....... ..
T Consensus 4 ~il~~~~s~-d~-~~r~~A~~~L~~~~~~~~-------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~ 74 (458)
T d1ibrb_ 4 TILEKTVSP-DR-LELEAAQKFLERAAVENL-------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 74 (458)
T ss_dssp HHHHHTTCS-CH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHHHHhCc-CH-HHHHHHHHHHHHHHhcCc-------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhH
Confidence 444455543 33 377777777766543210 12345566666443 46677777777776544321111 00
Q ss_pred -------h---hccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhcc-chhhHHHhhCCCchHhhhhhcC--CHHHHHHH
Q 000145 470 -------I---GKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVD-DSKWAITAAGGIPPLVQLLEAG--SQKAREVA 536 (2054)
Q Consensus 470 -------I---ve~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~-e~r~~I~~aGaIp~LV~LL~s~--s~~Vre~A 536 (2054)
+ ......+.+++.+.+++... ..++.++..++.... ... -.+.++.+...+.++ +...+..+
T Consensus 75 ~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~ 149 (458)
T d1ibrb_ 75 YQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ----WPELIPQLVANVTNPNSTEHMKEST 149 (458)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC----CTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HhhhhccCCHHHHHHHHHHHHhccCCCcHHH-HHHHHHHHHHHHHhCCccc----CcchhHHHHHHHHhhcchHHHHHHH
Confidence 1 01123345667766665443 344555555544211 110 023455666666553 67788888
Q ss_pred HHHHHHHhcCChhHHHHHHHcCChHHHHHhhccC--ChhHHHHHHHHHHHHHHhhc---------hhhHHHHHHHhcCCC
Q 000145 537 AHVLWILCCHSEDIRACVESAGAVPAFLWLLKSG--GPKGQDASAMALTKLIRAAD---------SATINQLLALLLGDS 605 (2054)
Q Consensus 537 A~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~--~~evq~~AA~AL~nLs~~~e---------~~~Ip~Lv~LL~~~~ 605 (2054)
..++..+..........-.-...++.++..+.+. +.+++..+..++.++..... ....+.+..++.+.+
T Consensus 150 l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 229 (458)
T d1ibrb_ 150 LEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD 229 (458)
T ss_dssp HHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCC
Confidence 8888877642211100000122356666777654 46789999999988865421 124566777788888
Q ss_pred cchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhh----------
Q 000145 606 PSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSL---------- 675 (2054)
Q Consensus 606 ~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~I---------- 675 (2054)
++++..+..++..+...... ..... ........+....++.+++++..+...+..++..........
T Consensus 230 ~~~~~~~~~~l~~i~~~~~~--~~~~~-l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 306 (458)
T d1ibrb_ 230 TRVRVAALQNLVKIMSLYYQ--YMETY-MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 306 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCGG--GCTTT-TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred HHHHHHHHHHHHHHHHHhHH--HHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHH
Confidence 99999999999887643221 11100 111223445556677889999999998888875321111000
Q ss_pred ----------hhCCCHHHHHHHhc-------cCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCH
Q 000145 676 ----------ATDEIVNPCMRLLT-------SNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSI 738 (2054)
Q Consensus 676 ----------v~~g~V~~Lv~LL~-------dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~ 738 (2054)
.-...++.+...+. +++..++..|..++..++...+. .. . ...++.+...+++++.
T Consensus 307 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~----~-~~l~~~i~~~l~s~~~ 379 (458)
T d1ibrb_ 307 EHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI----V-PHVLPFIKEHIKNPDW 379 (458)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH----H-HHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hh----h-hHHHHHHHHHhcCCCH
Confidence 00112333344432 22335788888888888763222 11 1 1245567778888999
Q ss_pred HHHHHHHHHHHHhhCCh--HHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHHHhhhc
Q 000145 739 DAAETAVAALANLLSDP--DIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 739 ~Vre~Al~AL~NLa~~~--e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
.+|+.|+.+|+.++... ..... .-...++.|+.++.+.++.+|..|+++|++++..
T Consensus 380 ~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 380 RYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp HHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998532 21111 1346789999999999999999999999999864
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.71 E-value=3.2e-06 Score=83.27 Aligned_cols=108 Identities=13% Similarity=0.117 Sum_probs=89.2
Q ss_pred hcCCChhhhHHHHHHHHHHhhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHH
Q 000145 483 LGLSSEQHQEYAVQLIAILTEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPA 562 (2054)
Q Consensus 483 L~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~a 562 (2054)
|+++|+.+|..|+.+|+.+.. .++++|+++|+++++.+|..|+++|+++.. .++++.
T Consensus 1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~ 57 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEP 57 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHH
Confidence 456777888888888766532 357889999999999999999999988753 346889
Q ss_pred HHHhhccCChhHHHHHHHHHHHHHHhhchhhHHHHHHHhcCCCcchHHHHHHHH
Q 000145 563 FLWLLKSGGPKGQDASAMALTKLIRAADSATINQLLALLLGDSPSSKAHVIKVL 616 (2054)
Q Consensus 563 LV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL 616 (2054)
|..++++.++.+|..++++|+.+. +.+.++.|.++++++++.++..+..+|
T Consensus 58 L~~~l~d~~~~VR~~a~~aL~~i~---~~~~~~~L~~ll~d~~~~vr~~A~~aL 108 (111)
T d1te4a_ 58 LIKLLEDDSGFVRSGAARSLEQIG---GERVRAAMEKLAETGTGFARKVAVNYL 108 (111)
T ss_dssp HHHHHHHCCTHHHHHHHHHHHHHC---SHHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHhhhccchhHHHHHHHHHHHHhC---ccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999999999999884 447889999999999999988776655
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.71 E-value=2.5e-06 Score=84.03 Aligned_cols=108 Identities=24% Similarity=0.269 Sum_probs=87.7
Q ss_pred ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCCh
Q 000145 647 NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDV 726 (2054)
Q Consensus 647 ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV 726 (2054)
.++|+.+|..|+.+|.++. ...+++|++.+.+.++.+|..|+++|+++.. .+.+
T Consensus 2 ~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------------~~~~ 55 (111)
T d1te4a_ 2 ADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------------ERAV 55 (111)
T ss_dssp CSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------------HHHH
T ss_pred CCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------------hhhH
Confidence 4556667777776665542 3467899999999999999999999988742 1267
Q ss_pred hhHHhhhhcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcCCCHHHHHHHHHHHH
Q 000145 727 KPLIKLAKTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAEGTSEGKKNASRALH 790 (2054)
Q Consensus 727 ~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~AL~ 790 (2054)
+.|+.+|++.++.|+..|+.+|+.+. .++.++.|..++.+.++.+|+.|+.+|.
T Consensus 56 ~~L~~~l~d~~~~VR~~a~~aL~~i~----------~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 56 EPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHhhhccchhHHHHHHHHHHHHhC----------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 88999999999999999999999774 3456888889999999999999998873
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.20 E-value=0.029 Score=67.40 Aligned_cols=342 Identities=13% Similarity=0.072 Sum_probs=190.1
Q ss_pred chHHHHHHHhcc-CCHHHHHHHHHHHHHhcccCccchhhh---hccc--cHHHHHhhhcCCChhhhHHHHHHHHHHhhhc
Q 000145 432 EAKKVLIGLITM-ATADVREYLILSLTKLCRREVGIWEAI---GKRE--GIQLLISLLGLSSEQHQEYAVQLIAILTEQV 505 (2054)
Q Consensus 432 g~I~~LI~LL~s-sd~evq~~Aa~AL~~Ls~~s~e~r~~I---ve~g--gIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s 505 (2054)
.++..++.++.. +.+++.++....+..+-..++.....+ .+.. --+++..++..++.-+...+...+..++...
T Consensus 74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~ 153 (477)
T d1ho8a_ 74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 153 (477)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence 356677777765 345666666655555554433221111 1111 1234555666666556666777777776643
Q ss_pred cchhhHHHhhCCCchHhhhh-hcCCHHHHHHHHHHHHHHhcCChhHHHHHH--HcCChHHHHHhhcc-------------
Q 000145 506 DDSKWAITAAGGIPPLVQLL-EAGSQKAREVAAHVLWILCCHSEDIRACVE--SAGAVPAFLWLLKS------------- 569 (2054)
Q Consensus 506 ~e~r~~I~~aGaIp~LV~LL-~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~--e~GaI~aLV~LLkS------------- 569 (2054)
..........-....+...| ++++.+.+..++..+..+.. .+..|..+. +...+++|+.+++.
T Consensus 154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~ 232 (477)
T d1ho8a_ 154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT 232 (477)
T ss_dssp TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence 33222111111112222333 55688888888888888876 577787764 34567777776653
Q ss_pred ----CChhHHHHHHHHHHHHHHhhc---------hhhHHHHHHHhcC-CCcchHHHHHHHHHHHHhhhc--chHHHHhhh
Q 000145 570 ----GGPKGQDASAMALTKLIRAAD---------SATINQLLALLLG-DSPSSKAHVIKVLGHVLTMAL--QEDLVQKGS 633 (2054)
Q Consensus 570 ----~~~evq~~AA~AL~nLs~~~e---------~~~Ip~Lv~LL~~-~~~~V~~~a~~AL~~La~~~~--~~d~~~~~l 633 (2054)
.+..+++.+.-+++-|+...+ .+.++.++++++. ..+.+-+-+..++.|+..... .+......+
T Consensus 233 ~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~ 312 (477)
T d1ho8a_ 233 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL 312 (477)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 124679999999999987532 2457888888864 444555556666666653211 111222223
Q ss_pred hcccchHHHHHHhcc--CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccCCHHHHHHHHHHH-HHhhCCC
Q 000145 634 AANKGLRSLVQVLNS--SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSNTQMVATQSARAL-GALSRPT 710 (2054)
Q Consensus 634 ~~~GaI~~LV~LLks--~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dgs~~vr~~AA~AL-~nLs~s~ 710 (2054)
...++++.+-.+... +|+++.+..- .|...... -++-+.+=+. +.+... ++|..+.
T Consensus 313 v~~~~l~~l~~L~~r~~~Dedl~edl~-~L~~~L~~----------------~~k~lTsfd~----Y~~Ev~Sg~L~WSP 371 (477)
T d1ho8a_ 313 LLGNALPTVQSLSERKYSDEELRQDIS-NLKEILEN----------------EYQELTSFDE----YVAELDSKLLCWSP 371 (477)
T ss_dssp HHHCHHHHHHHHHSSCCSSHHHHHHHH-HHHHHHHH----------------HHHTCCHHHH----HHHHHHHTCCCCCG
T ss_pred HHcchhHHHHHHhcCCCCCHHHHHHHH-HHHHHHHH----------------HHHhcCcHHH----HHHHHhcCCCCCCC
Confidence 344445444333332 2666554332 22222110 0011110011 111111 2333221
Q ss_pred Cccc-----chhHHH--HhcCChhhHHhhhhc----------CCHHHHHHHHHHHHHhhC-ChHHHHHHHhcCcHHHHHH
Q 000145 711 KTKT-----TNKMSY--IAEGDVKPLIKLAKT----------SSIDAAETAVAALANLLS-DPDIAAEVLLEDVVSALTR 772 (2054)
Q Consensus 711 ~~~d-----~~r~~I--~~~gaV~~Lv~LL~s----------~d~~Vre~Al~AL~NLa~-~~e~r~~Iv~~g~I~~LV~ 772 (2054)
.+.+ ++-..+ -+...++.|+++|.+ .|+.+..-||.=++.++. +|..|..+.+-|+=..+.+
T Consensus 372 ~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~ 451 (477)
T d1ho8a_ 372 PHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIME 451 (477)
T ss_dssp GGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHH
T ss_pred CcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHH
Confidence 1100 000001 112368889999962 345556668888888886 8888988888899888899
Q ss_pred HHcCCCHHHHHHHHHHHHHhhhc
Q 000145 773 VLAEGTSEGKKNASRALHQLLKH 795 (2054)
Q Consensus 773 LL~s~~~evr~~Aa~AL~nL~~~ 795 (2054)
+|.+.|+++|..|..|+..+..+
T Consensus 452 Lm~h~d~~Vr~eAL~avQklm~~ 474 (477)
T d1ho8a_ 452 LLNHSDSRVKYEALKATQAIIGY 474 (477)
T ss_dssp HTSCSSHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988764
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.10 E-value=0.041 Score=66.07 Aligned_cols=348 Identities=11% Similarity=0.044 Sum_probs=198.5
Q ss_pred CcHHHHHHHHcc-CCHHHHHHHHHHHHHhccCchhHHHHH----hcC--ChHHHHHhhccCCHHHHHHHHHHHHHHhcCC
Q 000145 84 QAMPLFISILRS-GTPLAKVNVAATLSVLCKDEDLRLKVL----LGG--CIPPLLSLLKSESTDTRKAAAEALYEVSSGG 156 (2054)
Q Consensus 84 GgVp~LV~LLks-~s~evr~~AA~vL~~Ls~~ee~r~~v~----~~G--aIp~LV~LL~sed~eVr~aAa~AL~nLS~~~ 156 (2054)
.++..++.+|.. ..+++..+....+..|-.++..+..+. ... .-+.+..++..++.-....+.+.+..++..+
T Consensus 74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~ 153 (477)
T d1ho8a_ 74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 153 (477)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence 368899999986 578899998888877765544333222 111 1245556676677778888888888887653
Q ss_pred CCCChhHHHHHHHcCcHHHHHHhhCCCCCCChhHHHHHHHHHHHHhcCCCchhHHHH-hhCChHHHHhhhcc--------
Q 000145 157 LSDDHVGMKIFVTEGVVPTLWDQLNPKNKQDNVVQGFVTGALRNLCGDKDGYWRATL-EAGGVDIIVGLLSS-------- 227 (2054)
Q Consensus 157 ~nk~~~~re~Iv~aG~Vp~Lv~LL~s~s~~d~~V~e~Al~aL~nL~~~~e~r~~aI~-eaGGI~~LV~LL~s-------- 227 (2054)
. +.....+.+.. .. .+...+.... +.....-++.+|..+...++-|..... +...++.++..|..
T Consensus 154 ~-~~~~~~e~l~~--~~-~~l~~l~~~~--~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~ 227 (477)
T d1ho8a_ 154 L-HNVKLVEKLLK--NN-NLINILQNIE--QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLAT 227 (477)
T ss_dssp T-CCHHHHHHHHH--CH-HHHHHHHCTT--CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred c-cccchHHHHHH--hh-HHHHHhhccc--ccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccc
Confidence 2 12222233332 12 2223332222 344566678888888887765533322 33345566655543
Q ss_pred ---------CCHHHHHHHHHHHHHHHhhcCCCcchhccc--chHHHHHHHhccCCChhHHHHHHHHHHHHhhccH-----
Q 000145 228 ---------DNAAAQSNAASLLARLMLAFGDSIPTVIDS--GAVKALVQLVGQNNDISVRASAADALEALSSKSI----- 291 (2054)
Q Consensus 228 ---------~s~evq~~A~~aL~nLs~~~~~~r~~i~~s--GaL~~LL~LL~s~~d~~Vr~~Aa~aL~nLs~~s~----- 291 (2054)
.....+-+++.++|-|++. ++....+... +.++.++.+++....+.+-+.+..++.|+.....
T Consensus 228 ~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~ 306 (477)
T d1ho8a_ 228 RIVATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKK 306 (477)
T ss_dssp --------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHH
T ss_pred hhhcccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 1235678899999999953 2333344333 4588899998766677888889999999976411
Q ss_pred HHHHHHHhcCCHHHHHHhhcC-CchhhhhhhhhhhhhhHHHHHHHHHhcCchhHHHHhhhhcCCCCchhhHHHHHHHHHH
Q 000145 292 KAKKAVVAADGVPVLIGAIVA-PSKECMQGQRGQALQGHATRALANIYGGMPALVVYLGELSQSPRLAAPVADIIGALAY 370 (2054)
Q Consensus 292 e~Rk~I~eaggL~~LIeLL~s-~s~e~~q~~~~~~lqe~Al~ALanLsGgis~lI~~L~elL~s~~~~~~iA~~LgaL~~ 370 (2054)
.....+...++++. ++.|.. +-.+. + ....|. .|.+.| ..-..
T Consensus 307 ~~~~~~v~~~~l~~-l~~L~~r~~~De------d-----l~edl~-----------~L~~~L-------------~~~~k 350 (477)
T d1ho8a_ 307 VIKQLLLLGNALPT-VQSLSERKYSDE------E-----LRQDIS-----------NLKEIL-------------ENEYQ 350 (477)
T ss_dssp HHHHHHHHHCHHHH-HHHHHSSCCSSH------H-----HHHHHH-----------HHHHHH-------------HHHHH
T ss_pred HHHHHHHHcchhHH-HHHHhcCCCCCH------H-----HHHHHH-----------HHHHHH-------------HHHHH
Confidence 12233344444433 333322 11110 0 000000 011000 00000
Q ss_pred HHHHhhcCCCCCCcccchhhHHHHHHHHcCCCChhhHHHHHHHHHHHhh-----cChhhh----HHHhhc--chHHHHHH
Q 000145 371 ALMVFEQKSGVDDEPFDARQIEDILVMLLKPHDNKLVQERVLEAMASLY-----GNIFLS----QWVSHA--EAKKVLIG 439 (2054)
Q Consensus 371 ~~~~l~~~~~~~~~~~~~~gIe~~Lv~LLk~~~~e~Vq~~Aa~AL~~L~-----~n~~~~----~~L~~~--g~I~~LI~ 439 (2054)
. -. ..+++...+.. +.|. .++..| ..+.+. ..++.|+.
T Consensus 351 ~-----------lT-----sfd~Y~~Ev~S---------------g~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~ 399 (477)
T d1ho8a_ 351 E-----------LT-----SFDEYVAELDS---------------KLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIE 399 (477)
T ss_dssp T-----------CC-----HHHHHHHHHHH---------------TCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHH
T ss_pred h-----------cC-----cHHHHHHHHhc---------------CCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHH
Confidence 0 00 01112211111 1111 111112 122222 34788899
Q ss_pred Hhc----------cCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhc
Q 000145 440 LIT----------MATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQV 505 (2054)
Q Consensus 440 LL~----------ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s 505 (2054)
++. +.|+.+...||.-++.++...|..+..+-+.|+=..+++++.++|+++|.+|+.++..+..++
T Consensus 400 lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~n 475 (477)
T d1ho8a_ 400 LLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGYT 475 (477)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 986 345777888889999999987777777777777777899999999999999999999887653
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.72 E-value=0.0004 Score=77.43 Aligned_cols=165 Identities=16% Similarity=0.075 Sum_probs=114.9
Q ss_pred CCchHhhhhhcCCHHHHHHHHHHHHHHhcCChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhchhhHHH
Q 000145 517 GIPPLVQLLEAGSQKAREVAAHVLWILCCHSEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAADSATINQ 596 (2054)
Q Consensus 517 aIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e~~~Ip~ 596 (2054)
.+..|..|++++++.||..++..| . .+.|..++++++..++..++..| . .+.
T Consensus 67 ~~~~L~~Ll~D~d~~VR~~AA~~L---p---------------~~~L~~L~~D~d~~VR~~aa~~l---~-------~~~ 118 (233)
T d1lrva_ 67 PVEALTPLIRDSDEVVRRAVAYRL---P---------------REQLSALMFDEDREVRITVADRL---P-------LEQ 118 (233)
T ss_dssp CGGGGGGGTTCSSHHHHHHHHTTS---C---------------SGGGGGTTTCSCHHHHHHHHHHS---C-------TGG
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHc---C---------------HHHHHHHhcCCChhHHHHHHhcc---C-------HHH
Confidence 567888999999999999887543 1 34566778889999998877643 1 245
Q ss_pred HHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhh
Q 000145 597 LLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLA 676 (2054)
Q Consensus 597 Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv 676 (2054)
|..++++.+..|+..+.+. .....|..+++++++++|..++.. +
T Consensus 119 L~~Ll~D~d~~VR~~aa~~---------------------~~~~~L~~L~~D~d~~VR~~aA~~---~------------ 162 (233)
T d1lrva_ 119 LEQMAADRDYLVRAYVVQR---------------------IPPGRLFRFMRDEDRQVRKLVAKR---L------------ 162 (233)
T ss_dssp GGGGTTCSSHHHHHHHHHH---------------------SCGGGGGGTTTCSCHHHHHHHHHH---S------------
T ss_pred HHHHhcCCCHHHHHHHHhc---------------------cchhHHHHHhcCCCHHHHHHHHHh---c------------
Confidence 7778888888877654322 123445567788888888876642 1
Q ss_pred hCCCHHHHHHHhccCCHHHHHHHHHHHHHhhCCCCcccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCChH
Q 000145 677 TDEIVNPCMRLLTSNTQMVATQSARALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSDPD 756 (2054)
Q Consensus 677 ~~g~V~~Lv~LL~dgs~~vr~~AA~AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~~e 756 (2054)
..+.|..++++.++.++..++..| . .+.|..++++.+..|+..++..+
T Consensus 163 ---~~~~L~~l~~D~d~~VR~~aa~~L---~------------------~~~L~~l~~D~d~~VR~aaae~~-------- 210 (233)
T d1lrva_ 163 ---PEESLGLMTQDPEPEVRRIVASRL---R------------------GDDLLELLHDPDWTVRLAAVEHA-------- 210 (233)
T ss_dssp ---CGGGGGGSTTCSSHHHHHHHHHHC---C------------------GGGGGGGGGCSSHHHHHHHHHHS--------
T ss_pred ---CHHHHHHHccCCCHHHHHHHHHhc---C------------------cHHHHHHHhCCCHHHHHHHHHhc--------
Confidence 125567778888999998877542 1 24577788899999988775321
Q ss_pred HHHHHHhcCcHHHHHHHHcCCCHHHHHHHHH
Q 000145 757 IAAEVLLEDVVSALTRVLAEGTSEGKKNASR 787 (2054)
Q Consensus 757 ~r~~Iv~~g~I~~LV~LL~s~~~evr~~Aa~ 787 (2054)
.+.++..|.+.+++||+.|+.
T Consensus 211 ----------~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 211 ----------SLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp ----------CHHHHHHCCCCCHHHHHHHHC
T ss_pred ----------cHHHHHHhCCCCHHHHHHHHH
Confidence 134566778889999988764
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=95.81 E-value=0.003 Score=70.13 Aligned_cols=159 Identities=15% Similarity=0.108 Sum_probs=96.9
Q ss_pred hHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhhhhccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHH
Q 000145 433 AKKVLIGLITMATADVREYLILSLTKLCRREVGIWEAIGKREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAI 512 (2054)
Q Consensus 433 ~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~Ive~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I 512 (2054)
.+..|+.|+.+.++.++..++..| +.+.|..++++++..++..++..|
T Consensus 67 ~~~~L~~Ll~D~d~~VR~~AA~~L------------------p~~~L~~L~~D~d~~VR~~aa~~l-------------- 114 (233)
T d1lrva_ 67 PVEALTPLIRDSDEVVRRAVAYRL------------------PREQLSALMFDEDREVRITVADRL-------------- 114 (233)
T ss_dssp CGGGGGGGTTCSSHHHHHHHHTTS------------------CSGGGGGTTTCSCHHHHHHHHHHS--------------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHc------------------CHHHHHHHhcCCChhHHHHHHhcc--------------
Confidence 345677888888899988887432 124566777777777777665432
Q ss_pred HhhCCCchHhhhhhcCCHHHHHHHHHH-----HHHHhcC-ChhHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHH
Q 000145 513 TAAGGIPPLVQLLEAGSQKAREVAAHV-----LWILCCH-SEDIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLI 586 (2054)
Q Consensus 513 ~~aGaIp~LV~LL~s~s~~Vre~AA~a-----L~nLa~~-sd~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs 586 (2054)
..+.|..++++++..+|..++.. |..+..+ +...|..+...-+.+.|..++++.++.++..++..|.
T Consensus 115 ----~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~--- 187 (233)
T d1lrva_ 115 ----PLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR--- 187 (233)
T ss_dssp ----CTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCC---
T ss_pred ----CHHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcC---
Confidence 23456666777777777766543 2222222 2234444444445666677777777777777765432
Q ss_pred HhhchhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHH
Q 000145 587 RAADSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAAS 659 (2054)
Q Consensus 587 ~~~e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ 659 (2054)
.+.|..++++.+..|+..+.+. ....++..|.++++++|+.++.
T Consensus 188 -------~~~L~~l~~D~d~~VR~aaae~----------------------~~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 188 -------GDDLLELLHDPDWTVRLAAVEH----------------------ASLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp -------GGGGGGGGGCSSHHHHHHHHHH----------------------SCHHHHHHCCCCCHHHHHHHHC
T ss_pred -------cHHHHHHHhCCCHHHHHHHHHh----------------------ccHHHHHHhCCCCHHHHHHHHH
Confidence 1345666777776666543211 2344666778888888887763
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=93.92 E-value=0.78 Score=52.75 Aligned_cols=201 Identities=14% Similarity=0.134 Sum_probs=126.1
Q ss_pred ChHHHHHhhccCChhHHHHHHHHHHHHHHh--hchhhHHHHHHHhcC----CCcchHHHHHHHHHHHHhhhcchHHHHhh
Q 000145 559 AVPAFLWLLKSGGPKGQDASAMALTKLIRA--ADSATINQLLALLLG----DSPSSKAHVIKVLGHVLTMALQEDLVQKG 632 (2054)
Q Consensus 559 aI~aLV~LLkS~~~evq~~AA~AL~nLs~~--~e~~~Ip~Lv~LL~~----~~~~V~~~a~~AL~~La~~~~~~d~~~~~ 632 (2054)
++..+.+++.++..... .++..+..+... +..+.+..+.+++++ +++.++..+.-++|.+.+..-.. ..
T Consensus 89 a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~~Pt~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~----~~ 163 (336)
T d1lsha1 89 ALLFLKRTLASEQLTSA-EATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCAN----TV 163 (336)
T ss_dssp HHHHHHHHHHTTCSCHH-HHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTT----CS
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHhccCCCCHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcC----CC
Confidence 45556677776654443 344555556544 456677888888875 35566677777777776421000 00
Q ss_pred hhcccchHHHHHHh----ccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc-------CCHHHHHHHHH
Q 000145 633 SAANKGLRSLVQVL----NSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS-------NTQMVATQSAR 701 (2054)
Q Consensus 633 l~~~GaI~~LV~LL----ks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d-------gs~~vr~~AA~ 701 (2054)
......++.+...+ ..++.+.+..+..+|+|+.. .+.++.|..++.+ .+..+|..|.+
T Consensus 164 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~ 232 (336)
T d1lsha1 164 SCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIM 232 (336)
T ss_dssp SCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC-----------HhHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 11123455555544 45677778888999999875 4567888888753 25689999999
Q ss_pred HHHHhhCCCCcccchhHHHHhcCChhhHHhhhhc--CCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHc-CCC
Q 000145 702 ALGALSRPTKTKTTNKMSYIAEGDVKPLIKLAKT--SSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLA-EGT 778 (2054)
Q Consensus 702 AL~nLs~s~~~~d~~r~~I~~~gaV~~Lv~LL~s--~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~-s~~ 778 (2054)
||.++....+. . +.+.+..+..+ .+.++|..|..+|.. ++|.. ..+..+...+. +.+
T Consensus 233 Alr~~~~~~p~--~---------v~~~l~~i~~n~~e~~EvRiaA~~~lm~--t~P~~-------~~l~~i~~~l~~E~~ 292 (336)
T d1lsha1 233 ALRNIAKRDPR--K---------VQEIVLPIFLNVAIKSELRIRSCIVFFE--SKPSV-------ALVSMVAVRLRREPN 292 (336)
T ss_dssp TTTTGGGTCHH--H---------HHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCCH-------HHHHHHHHHHTTCSC
T ss_pred HHHHhhhcCcH--H---------HHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCCH-------HHHHHHHHHHHhCcH
Confidence 99998753221 1 22345555544 578899888888854 33432 13455666554 557
Q ss_pred HHHHHHHHHHHHHhhhc
Q 000145 779 SEGKKNASRALHQLLKH 795 (2054)
Q Consensus 779 ~evr~~Aa~AL~nL~~~ 795 (2054)
.+++......|.++...
T Consensus 293 ~QV~sfv~S~l~~la~s 309 (336)
T d1lsha1 293 LQVASFVYSQMRSLSRS 309 (336)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 88888888888888874
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.50 E-value=4.2 Score=51.48 Aligned_cols=137 Identities=14% Similarity=0.131 Sum_probs=96.5
Q ss_pred hHHHHHHhcc-CCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhccC--CHHHHHHHHHHHHHhhCCCCc---
Q 000145 639 LRSLVQVLNS-SNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTSN--TQMVATQSARALGALSRPTKT--- 712 (2054)
Q Consensus 639 I~~LV~LLks-~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~dg--s~~vr~~AA~AL~nLs~s~~~--- 712 (2054)
++.+.+++.. -++++|..|-.-|..+.. .+|....|..++.+. +..+|..|+-.|.|.......
T Consensus 4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~----------~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~ 73 (959)
T d1wa5c_ 4 LETVAKFLAESVIASTAKTSERNLRQLET----------QDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN 73 (959)
T ss_dssp HHHHHHHHHHTTSGGGHHHHHHHHHHHHT----------STTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHc----------CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 4556666654 478888989888888765 257888888888654 357888899888877651111
Q ss_pred -----ccchhHHHHhcCChhhHHhhhhcCCHHHHHHHHHHHHHhhCC--hHHHHHHHhcCcHHHHHHHHcCCCHHHHHHH
Q 000145 713 -----KTTNKMSYIAEGDVKPLIKLAKTSSIDAAETAVAALANLLSD--PDIAAEVLLEDVVSALTRVLAEGTSEGKKNA 785 (2054)
Q Consensus 713 -----~d~~r~~I~~~gaV~~Lv~LL~s~d~~Vre~Al~AL~NLa~~--~e~r~~Iv~~g~I~~LV~LL~s~~~evr~~A 785 (2054)
.+..|.. +-..|+..+.+.+..++...+.+++.++.. |+. =++.++.|.+.+.++++..+..+
T Consensus 74 ~~~~i~~e~k~~-----Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~-----Wp~ll~~l~~~l~s~~~~~~~~~ 143 (959)
T d1wa5c_ 74 GNHLLPANNVEL-----IKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDR-----WPTLLSDLASRLSNDDMVTNKGV 143 (959)
T ss_dssp SCBSSCHHHHHH-----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHTTCCSSCTTHHHHH
T ss_pred ccCCCCHHHHHH-----HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccc-----cHHHHHHHHHHhCCCCHHHHHHH
Confidence 0122222 223366667778889999899899888641 210 14678889999999889899999
Q ss_pred HHHHHHhhhc
Q 000145 786 SRALHQLLKH 795 (2054)
Q Consensus 786 a~AL~nL~~~ 795 (2054)
..+|..++..
T Consensus 144 L~~l~~i~k~ 153 (959)
T d1wa5c_ 144 LTVAHSIFKR 153 (959)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHHHH
Confidence 9999999865
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=2.9 Score=47.16 Aligned_cols=194 Identities=13% Similarity=0.098 Sum_probs=146.0
Q ss_pred ccccHHHHHhhhcCCChhhhHHHHHHHHHHhhhccchhhHHHhh-CCCchHhhhhhcC--CHHHHHHHHHHHHHHhcCCh
Q 000145 472 KREGIQLLISLLGLSSEQHQEYAVQLIAILTEQVDDSKWAITAA-GGIPPLVQLLEAG--SQKAREVAAHVLWILCCHSE 548 (2054)
Q Consensus 472 e~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nLs~~s~e~r~~I~~a-GaIp~LV~LL~s~--s~~Vre~AA~aL~nLa~~sd 548 (2054)
..+.+..|+..+..-+.+.|+.++....++-+...+.+...++. -.=|.++..|-.+ ++++--.+-..|+....+ +
T Consensus 67 ~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~-e 145 (330)
T d1upka_ 67 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH-E 145 (330)
T ss_dssp HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS-H
T ss_pred HhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhh-H
Confidence 34567788888888889999999999999988666555443321 1123444444333 667777777888888774 6
Q ss_pred hHHHHHHHcCChHHHHHhhccCChhHHHHHHHHHHHHHHhhc-----------hhhHHHHHHHhcCCCcchHHHHHHHHH
Q 000145 549 DIRACVESAGAVPAFLWLLKSGGPKGQDASAMALTKLIRAAD-----------SATINQLLALLLGDSPSSKAHVIKVLG 617 (2054)
Q Consensus 549 ~~r~~I~e~GaI~aLV~LLkS~~~evq~~AA~AL~nLs~~~e-----------~~~Ip~Lv~LL~~~~~~V~~~a~~AL~ 617 (2054)
...+.+.....+..+++....++-++...|-.++..+..... ........++|.+++--.++++..-|+
T Consensus 146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg 225 (330)
T d1upka_ 146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG 225 (330)
T ss_dssp HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 666666778889999999999999998888888887754421 234566788999999999999999999
Q ss_pred HHHhhhcchHHHHhhhhcccchHHHHHHhccCCHHHHHHHHHHHHHHhh
Q 000145 618 HVLTMALQEDLVQKGSAANKGLRSLVQVLNSSNEENQEYAASVLADLFS 666 (2054)
Q Consensus 618 ~La~~~~~~d~~~~~l~~~GaI~~LV~LLks~s~evre~Aa~ALanLas 666 (2054)
.+.....+.....+-+.+..-+..++.++++.+..++-.|..++.-...
T Consensus 226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA 274 (330)
T d1upka_ 226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 274 (330)
T ss_dssp HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence 9987766666666667777779999999999999999999988777665
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=90.99 E-value=1.2 Score=51.27 Aligned_cols=207 Identities=18% Similarity=0.175 Sum_probs=124.2
Q ss_pred cccchHHHHHHhccCCHHHHHHHHHHHHHHhhcChhhhhhhhhCCCHHHHHHHhcc----CCHHHHHHHHHHHHHhhCC-
Q 000145 635 ANKGLRSLVQVLNSSNEENQEYAASVLADLFSMRQDICGSLATDEIVNPCMRLLTS----NTQMVATQSARALGALSRP- 709 (2054)
Q Consensus 635 ~~GaI~~LV~LLks~s~evre~Aa~ALanLas~~~e~r~~Iv~~g~V~~Lv~LL~d----gs~~vr~~AA~AL~nLs~s- 709 (2054)
...++..+.+++.++.-...+ +...|..+...... ....+..+..++++ +++.++..+..+++++...
T Consensus 86 T~~a~~~i~~~I~~~~ls~~e-a~~~l~~l~~~~~P------t~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~ 158 (336)
T d1lsha1 86 TSEALLFLKRTLASEQLTSAE-ATQIVASTLSNQQA------TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRY 158 (336)
T ss_dssp SHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTCCC------CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHH-HHHHHHHHhccCCC------CHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHH
Confidence 344577778878766433322 34455555442111 12345667777764 5778888888888888751
Q ss_pred -CCcccchhHHHHhcCChhhHHhhh----hcCCHHHHHHHHHHHHHhhCChHHHHHHHhcCcHHHHHHHHcC-------C
Q 000145 710 -TKTKTTNKMSYIAEGDVKPLIKLA----KTSSIDAAETAVAALANLLSDPDIAAEVLLEDVVSALTRVLAE-------G 777 (2054)
Q Consensus 710 -~~~~d~~r~~I~~~gaV~~Lv~LL----~s~d~~Vre~Al~AL~NLa~~~e~r~~Iv~~g~I~~LV~LL~s-------~ 777 (2054)
... +... ...++.+.+.+ ...+.+.+..++.+|+|+. . ++.++.|..++.+ .
T Consensus 159 c~~~-~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-~---------p~~i~~l~~~l~~~~~~~~~~ 222 (336)
T d1lsha1 159 CANT-VSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG-Q---------PNSIKKIQRFLPGQGKSLDEY 222 (336)
T ss_dssp HTTC-SSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-C---------GGGHHHHHTTSTTSSSCCCCS
T ss_pred hcCC-CCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC-C---------HhHHHHHHHHhcccccccccc
Confidence 111 0111 22445555444 4567777778999999996 2 3467778877753 2
Q ss_pred CHHHHHHHHHHHHHhhhcCCCchhHhhhhhhhhhHHHHHHhhccCCCCchhHHHHHHHHHHHhhcccCCCccCCcccccc
Q 000145 778 TSEGKKNASRALHQLLKHFPVGDVLKGNAQCRFVVLTLVDSLNAMDMNGTDVADALEVVALLARTKQGLNFTYPPWAALA 857 (2054)
Q Consensus 778 ~~evr~~Aa~AL~nL~~~~~~~e~i~~~i~~~g~v~~LV~LL~sg~~~~~~~~~AL~ALa~La~~~~~~~~i~~~~~~~~ 857 (2054)
+..+|..|+++|.++....| ......+..++.+..++...+..|..+|=. +.+ .
T Consensus 223 ~~~vR~aAi~Alr~~~~~~p-----------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~-t~P--~------------ 276 (336)
T d1lsha1 223 STRVQAEAIMALRNIAKRDP-----------RKVQEIVLPIFLNVAIKSELRIRSCIVFFE-SKP--S------------ 276 (336)
T ss_dssp CHHHHHHHHHTTTTGGGTCH-----------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHH-TCC--C------------
T ss_pred cHHHHHHHHHHHHHhhhcCc-----------HHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCC--C------------
Confidence 57899999999999877532 223456777877777777777777665422 111 0
Q ss_pred cCCCchHHHHHhh-hcCChhHHHHHHHHHHHhhccC
Q 000145 858 EVPSSIEPLVCCL-AEGPPPLQDKAIEILSRLCGDQ 892 (2054)
Q Consensus 858 ~~~~~L~~Lv~ll-~~~~~~vq~~Ai~iL~~L~~~~ 892 (2054)
...+..+...+ .+++..|.....-.|.++..+.
T Consensus 277 --~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~ 310 (336)
T d1lsha1 277 --VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 310 (336)
T ss_dssp --HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred --HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCC
Confidence 11244444433 4556667766666777766543
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.31 E-value=0.066 Score=52.90 Aligned_cols=39 Identities=31% Similarity=0.618 Sum_probs=34.5
Q ss_pred CceEEEEEcCCcchh--hcCCCccceEeeccCCCCcccceee
Q 000145 2010 GCLTVTIKRGNNLKQ--TMGTTNAFCRLTIGNGPPRQTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 2049 (2054)
|.|+|+|.+|.||+. ..|.++.||++++|+. -+||+|+.
T Consensus 6 G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~-~~~T~~~~ 46 (126)
T d2ep6a1 6 GILQVKVLKAADLLAADFSGKSDPFCLLELGND-RLQTHTVY 46 (126)
T ss_dssp EEEEEEEEEEESCCCSSSSSCCCEEEEEEETTE-EEECCCCS
T ss_pred EEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCe-EEEEEeeC
Confidence 899999999999976 4788999999999975 68899875
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.28 E-value=14 Score=41.57 Aligned_cols=202 Identities=11% Similarity=0.069 Sum_probs=142.1
Q ss_pred HHhhcchHHHHHHHhccCCHHHHHHHHHHHHHhcccCccchhh----h-hccccHHHHHhhhcCCChhhhHHHHHHHHHH
Q 000145 427 WVSHAEAKKVLIGLITMATADVREYLILSLTKLCRREVGIWEA----I-GKREGIQLLISLLGLSSEQHQEYAVQLIAIL 501 (2054)
Q Consensus 427 ~L~~~g~I~~LI~LL~ssd~evq~~Aa~AL~~Ls~~s~e~r~~----I-ve~ggIp~LV~LL~s~d~~Vr~~Aa~aL~nL 501 (2054)
.+...+.+..|+..+..=+-+.+..++..+.++-....+.+.. + .....+..|+..+ +++++-..+-..|+.+
T Consensus 64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREc 141 (330)
T d1upka_ 64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLREC 141 (330)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHH
Confidence 4555677888888888889999999999999887764444322 1 1223344444444 3556667777778888
Q ss_pred hhhccchhhHHHhhCCCchHhhhhhcCCHHHHHHHHHHHHHHhcCChh-HHHHHHH--cCChHHHHHhhccCChhHHHHH
Q 000145 502 TEQVDDSKWAITAAGGIPPLVQLLEAGSQKAREVAAHVLWILCCHSED-IRACVES--AGAVPAFLWLLKSGGPKGQDAS 578 (2054)
Q Consensus 502 s~~s~e~r~~I~~aGaIp~LV~LL~s~s~~Vre~AA~aL~nLa~~sd~-~r~~I~e--~GaI~aLV~LLkS~~~evq~~A 578 (2054)
.++ +.....+.....+..+.+....++-++-..|..++..|-..... ..+.+.. .......-.++.+++--+++.+
T Consensus 142 ik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqS 220 (330)
T d1upka_ 142 IRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 220 (330)
T ss_dssp HTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred Hhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHH
Confidence 774 44455566667788888888899999999999999877553333 3333332 2344555679999999999999
Q ss_pred HHHHHHHHHhh-----------chhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhcchHHHHh
Q 000145 579 AMALTKLIRAA-----------DSATINQLLALLLGDSPSSKAHVIKVLGHVLTMALQEDLVQK 631 (2054)
Q Consensus 579 A~AL~nLs~~~-----------e~~~Ip~Lv~LL~~~~~~V~~~a~~AL~~La~~~~~~d~~~~ 631 (2054)
...|+.+..+. +..-+..++.+|++.+..++..+-+....+......+..+..
T Consensus 221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~ 284 (330)
T d1upka_ 221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILD 284 (330)
T ss_dssp HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHH
Confidence 99999998653 234567899999999999999888888777655444444333
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.02 E-value=0.13 Score=51.21 Aligned_cols=40 Identities=25% Similarity=0.441 Sum_probs=32.5
Q ss_pred CceEEEEEcCCcch--hhcCCCccceEeeccCCCC----cccceee
Q 000145 2010 GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPP----RQTKVIF 2049 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~ 2049 (2054)
|.|+|+|++|.||+ .+-|.++.||++++.+++. ++|+|+.
T Consensus 15 ~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~ 60 (132)
T d1a25a_ 15 EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK 60 (132)
T ss_dssp SEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCS
T ss_pred CEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeec
Confidence 67999999999994 4677889999999955443 5788874
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.78 E-value=0.15 Score=51.37 Aligned_cols=46 Identities=33% Similarity=0.484 Sum_probs=36.0
Q ss_pred hhcCC--CceEEEEEcCCcch--hhcCCCccceEeeccCCCCc----ccceeee
Q 000145 2005 LHCLP--GCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGPPR----QTKVIFT 2050 (2054)
Q Consensus 2005 ~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 2050 (2054)
|++.| |.|+|+|+++.||+ ...|.+|.||+++++.+..+ +|+++.+
T Consensus 13 l~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~ 66 (145)
T d1dqva2 13 LCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 66 (145)
T ss_dssp EEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS
T ss_pred EEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeC
Confidence 55666 78999999999995 45677899999999865443 5888764
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.08 E-value=0.2 Score=49.90 Aligned_cols=38 Identities=18% Similarity=0.405 Sum_probs=32.2
Q ss_pred CceEEEEEcCCcchhh--cCCCccceEeeccCCCCccccee
Q 000145 2010 GCLTVTIKRGNNLKQT--MGTTNAFCRLTIGNGPPRQTKVI 2048 (2054)
Q Consensus 2010 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 2048 (2054)
|+|.|+|.+|+||+.. .|..+.||++++|+. .++|+++
T Consensus 10 G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~-~~~t~~~ 49 (136)
T d1wfja_ 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ-DQKSNVA 49 (136)
T ss_dssp EEEEEEEEEEEECSSCCSSCSSCCCEEEESSSC-EEECCCC
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCccEEEEEeee-eEEEEEE
Confidence 8999999999999965 688899999999875 4556655
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.92 E-value=0.27 Score=49.03 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=28.5
Q ss_pred CCCceEEEEEcCCcch--hhcCCCccceEeeccCCC
Q 000145 2008 LPGCLTVTIKRGNNLK--QTMGTTNAFCRLTIGNGP 2041 (2054)
Q Consensus 2008 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 2041 (2054)
-.|.|.|+|.++.||. ...|.++.||++++.++.
T Consensus 16 ~~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~ 51 (142)
T d1rh8a_ 16 DLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGR 51 (142)
T ss_dssp ETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSS
T ss_pred eCCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCc
Confidence 3699999999999994 467888999999996544
|