Citrus Sinensis ID: 000146
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2052 | 2.2.26 [Sep-21-2011] | |||||||
| Q94FN2 | 1978 | Protein MOR1 OS=Arabidops | yes | no | 0.958 | 0.993 | 0.746 | 0.0 | |
| Q5N749 | 1997 | Protein MOR1 OS=Oryza sat | yes | no | 0.963 | 0.989 | 0.709 | 0.0 | |
| Q14008 | 2032 | Cytoskeleton-associated p | yes | no | 0.657 | 0.663 | 0.307 | 1e-173 | |
| A2AGT5 | 2032 | Cytoskeleton-associated p | yes | no | 0.662 | 0.668 | 0.299 | 1e-168 | |
| Q1ZXQ8 | 2013 | Centrosomal protein 224 O | yes | no | 0.456 | 0.464 | 0.264 | 5e-92 | |
| O94534 | 809 | Spindle pole body compone | yes | no | 0.246 | 0.625 | 0.268 | 4e-43 | |
| Q09933 | 882 | Phosphoprotein p93 OS=Sch | no | no | 0.213 | 0.497 | 0.247 | 9e-30 | |
| P46675 | 888 | Protein STU2 OS=Saccharom | yes | no | 0.314 | 0.727 | 0.245 | 4e-26 | |
| G5EEM5 | 1415 | Zygote defective protein | yes | no | 0.108 | 0.156 | 0.288 | 2e-17 | |
| Q2UCC9 | 1184 | Protein stu1 OS=Aspergill | no | no | 0.142 | 0.246 | 0.226 | 0.0002 |
| >sp|Q94FN2|MOR1_ARATH Protein MOR1 OS=Arabidopsis thaliana GN=MOR1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 3040 bits (7882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1535/2057 (74%), Positives = 1732/2057 (84%), Gaps = 91/2057 (4%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVS 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGH------ 56
Query: 62 DLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKA 121
LF+KTVADSNAPVQ+KALDALIA+L+A
Sbjct: 57 ---------------------------------LFRKTVADSNAPVQEKALDALIAFLRA 83
Query: 122 ADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVA 181
AD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWVELEAVDVFLD MEKAIKNKVA
Sbjct: 84 ADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWVELEAVDVFLDTMEKAIKNKVA 143
Query: 182 KAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD 241
KAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQDQNVRAS+KG+TLELCRWIGKD
Sbjct: 144 KAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQDQNVRASAKGVTLELCRWIGKD 203
Query: 242 PVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEES 301
PVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQDKE E S+ VG GPSEE+
Sbjct: 204 PVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQDKEPEAEASSDVVGDGPSEEA 263
Query: 302 TADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 361
AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSERK+AVAELTKLASTK+IAPGD
Sbjct: 264 VADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLASTKKIAPGD 323
Query: 362 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTV 421
F+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS SSRF+LPVLLEKLKEKK +V
Sbjct: 324 FSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFSASSRFMLPVLLEKLKEKKQSV 383
Query: 422 AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 481
+ LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS TL W+TFC+ETS+KA +LK
Sbjct: 384 TDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRSSTLTWLTFCLETSNKALILKA 443
Query: 482 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 541
HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPLERS+EKLDDVR+ KLSEMIAG
Sbjct: 444 HKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPLERSLEKLDDVRKKKLSEMIAG 503
Query: 542 SGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 601
SGG GTSS VQ+S GS + S++SFVRKSAASMLSGKRP +A ASKK G KP
Sbjct: 504 SGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASMLSGKRPAPSAQASKKVGTGKP 562
Query: 602 SAKKDG-SGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 660
K S + E SK E PEDVEP+EM LEEIE+RLGSL+ +TV QLKS+VWKERLEA
Sbjct: 563 GGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGSLVKPETVSQLKSSVWKERLEA 622
Query: 661 ISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 720
+L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQQQVIE+I Y+++TA KFPKKC
Sbjct: 623 TLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQQQVIEIITYISSTAAKFPKKC 682
Query: 721 VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILW 780
VVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FERL+KIMK+HKNPKVLSEG+LW
Sbjct: 683 VVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFERLFKIMKEHKNPKVLSEGLLW 742
Query: 781 MVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 840
MVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATIKLLGALHKFVGPDIKGFL DV
Sbjct: 743 MVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATIKLLGALHKFVGPDIKGFLNDV 802
Query: 841 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS 900
KPALLSALD EYEKNPFEGT PK+ V + ++S SSGG D LPREDIS K TP L+K
Sbjct: 803 KPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSGGLDSLPREDISTKITPNLLKG 861
Query: 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 960
ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGLRGRL DSNKNLVM TL T+G
Sbjct: 862 FESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGLRGRLLDSNKNLVMQTLTTIGG 921
Query: 961 VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 1020
VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL LD WL AVHLDKM+PY+ ALT
Sbjct: 922 VAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAALDLWLGAVHLDKMIPYIIIALT 981
Query: 1021 DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1080
D K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS AMTDKS+DVRKAAE CI EILR
Sbjct: 982 DGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTAMTDKSADVRKAAEGCISEILR 1041
Query: 1081 AGGQETIEKNLKDIQGPALALILERIKLN------GASQVSMGPTSKSSSKVPKSASNGV 1134
GQE IEKNLKDIQGPALAL+LE+++ +S+ GP SK +K+ KS SNG
Sbjct: 1042 VSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSKAMAGPVSKGVTKISKSTSNGT 1101
Query: 1135 SKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDP 1194
K GNR SR +PTKG+ I SV D A+QSQALLN KDSNKEDRER+VVRR KFE+
Sbjct: 1102 LKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNTKDSNKEDRERVVVRRIKFEEL 1156
Query: 1195 RIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRW 1254
R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+LQKALPS+ K+IIEVLD+LLRW
Sbjct: 1157 RPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIEVLDVLLRW 1216
Query: 1255 FVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREK 1314
FVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EAA+FLPCL EK GHNIEKVREK
Sbjct: 1217 FVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEAAIFLPCLAEKLGHNIEKVREK 1276
Query: 1315 MRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQI 1374
MREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL+G+L++ G EI G LK L I
Sbjct: 1277 MRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDLIGYLLETCGTEIGGLLKYLNI 1336
Query: 1375 VASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKK 1434
VASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLTDAQKSM+DDRFKWK ++MEK+
Sbjct: 1337 VASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLTDAQKSMIDDRFKWKAKDMEKR 1396
Query: 1435 KEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRAL 1494
+EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP R++YG SE +ER+ +PR +
Sbjct: 1397 REGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLFPRQSYGISEQMLERTPVPRTI 1456
Query: 1495 ASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSC 1554
A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+NDPE S +DELVKDAD LVSC
Sbjct: 1457 AGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQASNDPEESAIDELVKDADGLVSC 1516
Query: 1555 LANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDE 1614
LANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+AV+E TL+SLITELLLWLLDE
Sbjct: 1517 LANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAHAVKEGTLESLITELLLWLLDE 1576
Query: 1615 RVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARN 1674
RVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LLRPLDPSRWPSPA+ E +A RN
Sbjct: 1577 RVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLLRPLDPSRWPSPATAEVYAVRN 1636
Query: 1675 QRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMV 1734
Q+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ+LGMEEIRRRAGADDKPLRMV
Sbjct: 1637 QKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQDLGMEEIRRRAGADDKPLRMV 1696
Query: 1735 KTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHW 1794
KTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLNLETLAAARMLT+TGP GQTHW
Sbjct: 1697 KTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLNLETLAAARMLTATGPVGQTHW 1756
Query: 1795 GDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQ 1854
DS ANNP+ NSAD QLKQEL AIFKKIGDKQT TIGLY+LY IT+ YPKVDIF+QLQ
Sbjct: 1757 TDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIGLYDLYHITKSYPKVDIFSQLQ 1816
Query: 1855 NASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSPEFAPLSPVHTNSMND 1914
NASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++L + SP+ LS + +
Sbjct: 1817 NASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSSLALPSPDIPSLSSLDVKPL-- 1874
Query: 1915 AKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENPLSDQRNERFGVTSGTLDAIRE 1974
MN +S+ YT+D R AS + P GV +GTLDAIRE
Sbjct: 1875 ---MNPRSD--------LYTDDIR-----ASNMNP-------------GVMTGTLDAIRE 1905
Query: 1975 RMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQSRSSDRASVEN-PAQGSVLPMDEKA 2033
RMK+MQLA++ +P ++PL+ NDN++ ++ QS + E VLPMDEKA
Sbjct: 1906 RMKNMQLASS----EPVSKPLMPTNDNLS--MNQQSVPPSQMGQETVHTHPVVLPMDEKA 1959
Query: 2034 LSGLQARMERLKSGTIE 2050
LSGLQARMERLK G++E
Sbjct: 1960 LSGLQARMERLKGGSLE 1976
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Microtubule-binding protein that is essential for cortical microtubules organization and function. Essential for maintaining the interphase cortical array and for correct morphogenesis. Promotes rapid growth and shrinkage of microtubules and suppresses the pausing of interphase microtubules. Regulates the structure and function of microtubule arrays during mitosis and cytokinesis. Probably not required for cellulose microfibrils alignment in roots. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5N749|MOR1_ORYSJ Protein MOR1 OS=Oryza sativa subsp. japonica GN=MOR1 PE=2 SV=1 | Back alignment and function description |
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Score = 2862 bits (7419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1468/2069 (70%), Positives = 1714/2069 (82%), Gaps = 92/2069 (4%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVS 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE G
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFG------- 55
Query: 62 DLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKA 121
PLFKKTVADSNAPVQ+KALDAL+A+ +A
Sbjct: 56 --------------------------------PLFKKTVADSNAPVQEKALDALLAFQRA 83
Query: 122 ADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVA 181
ADADA RYAKEVCDAI AKCLTGRPKTVEKAQA F+LWVELEA +VFL+ MEKA+KNKVA
Sbjct: 84 ADADASRYAKEVCDAIVAKCLTGRPKTVEKAQAAFLLWVELEAAEVFLESMEKAVKNKVA 143
Query: 182 KAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD 241
KAVVPAIDVMFQALSEFGAK++PPK+ILKMLPELFDH DQNVRASSKGLTLELCRWIGK+
Sbjct: 144 KAVVPAIDVMFQALSEFGAKVVPPKKILKMLPELFDHPDQNVRASSKGLTLELCRWIGKE 203
Query: 242 PVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEES 301
PVK ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ+KEL +E++ E G SEE+
Sbjct: 204 PVKAILFEKMRDTMKKELEAELANVSGIAKPTRKIRSEQEKELEEEVVPEAAGTNNSEEA 263
Query: 302 TADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 361
+ P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSER+DAVAELTKLASTK+IAPGD
Sbjct: 264 VPEAPMEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSERRDAVAELTKLASTKKIAPGD 323
Query: 362 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTV 421
F E+CRTLKKLITDVN+AV+VEA QAIGNLA+GLRTHFSG+SR LLPVLLEKLKEKKPT+
Sbjct: 324 FHEICRTLKKLITDVNLAVSVEATQAIGNLAKGLRTHFSGNSRVLLPVLLEKLKEKKPTM 383
Query: 422 AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 481
E+L+QTLQAMHK+GC+ L+DV+EDV+ +VKNKVPLVRSLTLNWV FCIETS+KA VLK+
Sbjct: 384 TEALSQTLQAMHKSGCITLLDVIEDVRVAVKNKVPLVRSLTLNWVAFCIETSNKATVLKL 443
Query: 482 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 541
HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PLERS+EKLDDVR+ KLS+MI G
Sbjct: 444 HKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPLERSLEKLDDVRKKKLSDMI-G 502
Query: 542 SGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVK- 600
S D +GT +A +G + E +SS +R+SAASMLSGK+PV A PA+KK GP K
Sbjct: 503 SASDTTSGTVAA--SNTGVGTSAREVMDSSSMRRSAASMLSGKKPVQAVPATKKSGPAKS 560
Query: 601 PSAKKDGSGKQETSKLTEAP--EDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 658
+AKK G Q SK + AP EDVEPSEMSLEEIE +L S++ ++T+ QLKS VWKERL
Sbjct: 561 ATAKKTDGGPQ--SKASAAPVIEDVEPSEMSLEEIEEKLSSVVKSETISQLKSTVWKERL 618
Query: 659 EAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 718
EAIS L+Q+VE++ LD+S E+LVRL+C +PGWSEKNVQVQQQVIEV Y+A+T +FPK
Sbjct: 619 EAISMLKQEVESLTELDKSAELLVRLLCAVPGWSEKNVQVQQQVIEVSTYIASTVNRFPK 678
Query: 719 KCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGI 778
+CVVLCLLGISERVADIKTR HAMKCLT F EAVGPGF+FERLYKIMK+HKNPKVLSEGI
Sbjct: 679 RCVVLCLLGISERVADIKTRGHAMKCLTAFCEAVGPGFVFERLYKIMKEHKNPKVLSEGI 738
Query: 779 LWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 838
LWMVSAVEDFG+S+LKLKD IDFCKD GLQSSAAATRNATIKL+G LHKFVGPDIKGFL+
Sbjct: 739 LWMVSAVEDFGISNLKLKDTIDFCKDIGLQSSAAATRNATIKLIGVLHKFVGPDIKGFLS 798
Query: 839 DVKPALLSALDAEYEKNPFEGTV-VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 897
DVKPALLS LDAEYEKNPFEGT PK+TVRA+++ SS SSG SDGLPREDIS K TPTL
Sbjct: 799 DVKPALLSTLDAEYEKNPFEGTASAPKRTVRAADAVSSASSGTSDGLPREDISAKITPTL 858
Query: 898 VKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLIT 957
+K+L SPDWK+RLESI+AV+KI+EEA+KRIQP GT ELF LR RLYDSNKNLVMATL T
Sbjct: 859 LKNLGSPDWKLRLESIDAVSKIVEEAHKRIQPTGTVELFTALRARLYDSNKNLVMATLST 918
Query: 958 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTT 1017
+G +ASAMGPAVEKSSKG+L+D+LKCLGDNKKHMRECTLT LD W+AA LDKMVPY+T
Sbjct: 919 IGGLASAMGPAVEKSSKGILADVLKCLGDNKKHMRECTLTALDLWVAAAQLDKMVPYITV 978
Query: 1018 ALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1077
L D K G+EGRKDLFDWLSK + +S +A LLKP++ ++ DKSS+VRKAAE+ + E
Sbjct: 979 TLGDQKTGSEGRKDLFDWLSKHASNMSDPSEALPLLKPSASSLMDKSSEVRKAAESFMNE 1038
Query: 1078 ILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ----------VSMGPTSKSSSKVP 1127
IL+ GQ+ + KNLKD+ P LA++ ER+KL+ + SM SK+ SK
Sbjct: 1039 ILKICGQDVVAKNLKDLPSPTLAIVAERLKLSTVHEGFSDSVKMVTTSMSLPSKAGSKNN 1098
Query: 1128 KSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMV-V 1186
K N + ++A+S R IP + + +++S QD ++QSQAL N+KDSNKE+RER V V
Sbjct: 1099 KHGPNDRGSNVSKAVSQRGIPARSSV--TMISSQD-SIQSQALFNIKDSNKEERERRVLV 1155
Query: 1187 RRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIE 1246
R+FKFE+PR EQI EL+ ++ ++FRED+ RL ++DFK+Q+DG+E+LQKALPS RK++IE
Sbjct: 1156 RKFKFEEPRREQIDELKIELFRHFREDVSLRLWNSDFKRQIDGIELLQKALPSSRKEVIE 1215
Query: 1247 VLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1306
+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D+ Y LTE+EAA+FLPCL+EKSGH
Sbjct: 1216 LLDILLRWFVLRFCESNTTCLLKVLDFLPELFDVLKDQSYMLTEAEAAIFLPCLMEKSGH 1275
Query: 1307 NIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEIS 1366
NIEKVREKM EL KQ+VN YS K LPYILEGLRSKNNRTRIECVD++G+ +DHHG E+S
Sbjct: 1276 NIEKVREKMGELIKQMVNIYSLPKLLPYILEGLRSKNNRTRIECVDIIGYFMDHHGTEVS 1335
Query: 1367 GQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKW 1426
G LK+L VA+LTAERDGEIRKAALNTLAT YK LG+D+WRYVGKL+DAQ+SMLDDRFKW
Sbjct: 1336 GLLKNLPSVAALTAERDGEIRKAALNTLATAYKNLGDDVWRYVGKLSDAQRSMLDDRFKW 1395
Query: 1427 KVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD-VSQSVSGPTLMRRNYGHSELHV 1485
K REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+ VS+S++G + R N+G+S+ H
Sbjct: 1396 KAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGEAVSRSMAGSMISRENFGYSDAH- 1454
Query: 1486 ERSIMPRALASVS-GPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDEL 1544
++PR +A+ + GP DW EALDI++ G PEQSVEGMKV+CHEL QA DPE SV+D+L
Sbjct: 1455 ---MVPRQMATATPGPADWREALDIVALGLPEQSVEGMKVICHELTQAV-DPESSVLDDL 1510
Query: 1545 VKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLI 1604
+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTLMQTFQ KRLA+AV+E TLD+LI
Sbjct: 1511 IKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTLMQTFQIKRLAHAVKEGTLDNLI 1570
Query: 1605 TELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSP 1664
TELLLWLLDERVP MDDGSQLLKALNVLMLKILDNA+RTSSFVVLINLLRPLDPSRWPSP
Sbjct: 1571 TELLLWLLDERVPLMDDGSQLLKALNVLMLKILDNAERTSSFVVLINLLRPLDPSRWPSP 1630
Query: 1665 ASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRA 1724
ES A +NQ+FSDLVVKCLIKLTKVLQSTIY+VDLDRILQSIH+YLQELGMEEIRRRA
Sbjct: 1631 TPPESLAVKNQKFSDLVVKCLIKLTKVLQSTIYEVDLDRILQSIHIYLQELGMEEIRRRA 1690
Query: 1725 GADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLT 1784
GADDKPLRMVKTVLHELVKLRG AIKGHLSMVPID +PQPIILAYIDLNL+TLAAARMLT
Sbjct: 1691 GADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDAEPQPIILAYIDLNLQTLAAARMLT 1750
Query: 1785 STGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLY 1844
+G GQTHWGD+ +NNP +T+S DAQLKQELAA+FKKIGDKQTCTIGLYELYRITQLY
Sbjct: 1751 PSGTMGQTHWGDAGSNNPNPSTHSTDAQLKQELAAVFKKIGDKQTCTIGLYELYRITQLY 1810
Query: 1845 PKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSPEFAPL 1904
PKVDIFAQLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++T PP + SP+FAP
Sbjct: 1811 PKVDIFAQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLST-PPPIAPIPSPKFAP- 1868
Query: 1905 SPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENPLSDQRNERFGV 1964
SPVHT S+N+ N + T R G I +++ ++ + +R+
Sbjct: 1869 SPVHTKSINNKTDCNEDDAGGD-------THPFRGQGEIDNRL-----QTTNLQTDRYQ- 1915
Query: 1965 TSGTLDAIRERMKSMQLAAAAGNPDPGN-RPLINMNDNVNNGLSSQSRSSDRASVENPAQ 2023
+SGTLDA+RERMKS+Q AA N D RPL +MN N +G R + Q
Sbjct: 1916 SSGTLDALRERMKSIQAAAVGANFDGVQARPLPSMNGNTLHG-------GTRLDADPQTQ 1968
Query: 2024 GSVLPMDEKALSGLQARMERLKSGTIEPL 2052
+ PMDE+ALSGLQARMERLKSG++EPL
Sbjct: 1969 NIIPPMDERALSGLQARMERLKSGSMEPL 1997
|
Microtubule-associated protein that is essential for cortical microtubules organization and function. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q14008|CKAP5_HUMAN Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust.
Identities = 452/1468 (30%), Positives = 745/1468 (50%), Gaps = 119/1468 (8%)
Query: 95 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQ 153
L KK V DSNA VQ K L+A + Y++ A AG+ EV + +K + K E
Sbjct: 52 LIKKFVTDSNAVVQLKGLEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGI 110
Query: 154 AVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLP 213
+ ++++E+E + + + K + NK K +V I+ + +ALSEFG+KII K I+K+LP
Sbjct: 111 EICLMYIEIEKGEAVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLP 170
Query: 214 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA-RP 272
+LF+ +++ VR +K + +E+ RWI +D ++ L + + KELE E V + +A RP
Sbjct: 171 KLFESREKAVRDEAKLIAVEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSAPRP 228
Query: 273 TRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEG 332
TR +R++Q+ E E G D P+ID YEL++ V+IL+ L K F++
Sbjct: 229 TRFLRSQQELEAKLEQQQSAGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-FYDK 287
Query: 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNL 391
++A KW ERK+A+ + L ++ GD+ ++ + LKK++ D N+ + A + + L
Sbjct: 288 IEAKKWQERKEALESVEVLIKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGL 347
Query: 392 ARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 451
A GLR F + ++P +LEK KEKKP V ++L + + A+ L ++ EDV +
Sbjct: 348 AVGLRKKFGQYAGHVVPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVM 405
Query: 452 KNKVPLVRSLTLNWVT----FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAA 504
NK P ++ T ++ C ++ ++LK P C ++ +ND PEVRDAA
Sbjct: 406 DNKNPTIKQQTSLFIARSFRHCTASTLPKSLLK------PFCAALLKHINDSAPEVRDAA 459
Query: 505 FSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 564
F L K VG + + + +D ++ +K+ E S +V+ G
Sbjct: 460 FEALGTALKVVGEKAVNPFLADVDKLKLDKIKE-------------CSEKVELIHGKKAG 506
Query: 565 VEASESSFV---RKSAASMLSGKR-----------PVSAAPASKKGGPVKPS--AKKDGS 608
+ A + F ++AAS +G + P+ APA+K GGP K A G+
Sbjct: 507 LAADKKEFKPLPGRTAASGAAGDKDTKDISAPKPGPLKKAPAAKAGGPPKKGKPAAPGGA 566
Query: 609 GKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 666
G T K E E VEP E+S+E E + +++P + L S+ WKERL + ++
Sbjct: 567 GNTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQK 625
Query: 667 QVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLL 726
VE + + + LVR++ PGW E N QV Q + ++ +A F K + L
Sbjct: 626 AVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQVVLD 684
Query: 727 GISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 786
G+ +++ D+K +A + +T +EA + E++ + KNPK SE + W+ +A++
Sbjct: 685 GLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQVVSMAFSQKNPKNQSETLNWLSNAIK 744
Query: 787 DFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 846
+FG S L +K I K T L ++ A R A I LLG ++ +VGP ++ F D KPALLS
Sbjct: 745 EFGFSGLNVKAFISNVK-TALAATNPAVRTAAITLLGVMYLYVGPSLRMFFEDEKPALLS 803
Query: 847 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG-------------LPREDISGKF 893
+DAE+EK +G P T S+ ++S + G DG LPR +IS K
Sbjct: 804 QIDAEFEK--MQGQSPPAPTRGISKHSTSGTDEGEDGDEPDDGSNDVVDLLPRTEISDKI 861
Query: 894 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 953
T LV + +WK+R E ++ V I+ +A K IQP GEL L+GRL DSNK LV
Sbjct: 862 TSELVSKIGDKNWKIRKEGLDEVAGIINDA-KFIQP-NIGELPTALKGRLNDSNKILVQQ 919
Query: 954 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP 1013
TL L +A AMGP +++ K + I+ LGD+K ++R L ++AW + + +
Sbjct: 920 TLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNNVRAAALATVNAWAEQTGMKEWLE 979
Query: 1014 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAE 1072
+ K R++L WL+++L L P L P + + D++ DVRK A+
Sbjct: 980 GEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDLILCVPHLYSCLEDRNGDVRKKAQ 1039
Query: 1073 ACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLN-----------------GAS 1112
+ + G E + K LK + +LE+ K+N G++
Sbjct: 1040 DALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKVNMPAKPAPPTKATSKPMGGSA 1099
Query: 1113 QVSMGPTSK------SSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1166
P S SSS PK G +SS+ +G + S S+++ +
Sbjct: 1100 PAKFQPASAPAEDCISSSTEPKPDPKKAKAPG---LSSKAKSAQGKKMPSKTSLKEDEDK 1156
Query: 1167 SQALLNVKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTD 1222
S + V + KE R + + V ++ F PR E I++L+ M + L + +D
Sbjct: 1157 SGPIFIVVPNGKEQRMKDEKGLKVLKWNFTTPRDEYIEQLKTQMSSCVAKWLQDEMFHSD 1216
Query: 1223 FKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1282
F+ L ++ L S ++ +I LD++L+W L+F +NT+ L+K LE+L LF L
Sbjct: 1217 FQHHNKALAVMVDHLESEKEGVIGCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLS 1276
Query: 1283 DEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSK 1342
+E Y LTE+EA+ F+P LV K G + +R+ +R + ++ Y A+K P+I+EG +SK
Sbjct: 1277 EEEYHLTENEASSFIPYLVVKVGEPKDVIRKDVRAILNRMCLVYPASKMFPFIMEGTKSK 1336
Query: 1343 NNRTRIECVDLVGFLIDHHGAEISGQL--KSLQIVASLTAERDGEIRKAALNTLATGYKI 1400
N++ R EC++ +G L++ +G + K+L+ +A +RD +R AALNT+ T Y +
Sbjct: 1337 NSKQRAECLEELGCLVESYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVYNV 1396
Query: 1401 LGEDIWRYVGKLTDAQKSMLDDRFKWKVREME----KKKEGKPGEAR------AALRRSV 1450
G+ +++ +G L++ SML++R K + K+ E KP A+ LR+
Sbjct: 1397 HGDQVFKLIGNLSEKDMSMLEERIKRSAKRPSAAPIKQVEEKPQRAQNISSNANMLRKGP 1456
Query: 1451 RENGSDIAEQSGDVSQSVSGPTLMRRNY 1478
E+ S Q+ +S ++RR +
Sbjct: 1457 AEDMSSKLNQARSMSGHPEAAQMVRREF 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Homo sapiens (taxid: 9606) |
| >sp|A2AGT5|CKAP5_MOUSE Cytoskeleton-associated protein 5 OS=Mus musculus GN=Ckap5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 593 bits (1529), Expect = e-168, Method: Compositional matrix adjust.
Identities = 437/1458 (29%), Positives = 737/1458 (50%), Gaps = 99/1458 (6%)
Query: 95 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQ 153
L KK V DSNA VQ K L+A + Y++ A AG+ EV + +K + K E
Sbjct: 52 LIKKFVTDSNAVVQLKGLEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKELGI 110
Query: 154 AVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLP 213
+ +++VE+E + + + K + NK K +V I+ + +ALSEFG+KII K I+K+LP
Sbjct: 111 EICLMYVEIEKGESVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIKVLP 170
Query: 214 ELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTARP 272
+LF+ +D+ VR +K +E+ RW +D VK L + + KELE E V + +G +P
Sbjct: 171 KLFESRDKAVRDEAKLFAIEIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGAPKP 228
Query: 273 TRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEG 332
+R +R++Q+ E E G D P++D YEL+D V+IL+ L K F++
Sbjct: 229 SRFLRSQQELEAKLEQQQSAGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-FYDK 287
Query: 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNL 391
++A KW ERK+A+ + L ++ GD+ ++ + LKK++ D N+ + A + + L
Sbjct: 288 IEAKKWQERKEALEAVEVLVKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGL 347
Query: 392 ARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 451
A GLR F + ++P +LEK KEKKP V ++L + + A+ L ++ EDV +
Sbjct: 348 AVGLRKKFGQYAGHVVPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVLAVM 405
Query: 452 KNKVPLVRSLTLNWVT----FCIETSSKAAVLKVHKDYVPIC---MECLNDGTPEVRDAA 504
NK P ++ T ++ C ++ ++LK P C ++ +ND PEVRDAA
Sbjct: 406 DNKNPTIKQQTSLFIARSFRHCTSSTLPKSLLK------PFCAALLKHINDSAPEVRDAA 459
Query: 505 FSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE------MIAGSGGDVATGTSSARVQTS 558
F L K VG + + + +D ++ +++ E ++ G +AT ++
Sbjct: 460 FEALGTALKVVGEKSVNPFLADVDKLKLDRIKECSEKVELVHGKKSGLATEKKESK---- 515
Query: 559 GGSVPSVEASESSFVRKSAASMLSGKRP--VSAAPASKKGGPVKPSAKK----DGSGKQE 612
+P A+ + K +SG +P + P +K GGP K S +
Sbjct: 516 --PLPGRAAASGAAGDKDTKD-VSGPKPGPLKKTPTAKAGGPSKKGKTTAPGGSASAGTK 572
Query: 613 TSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ 672
K E E VEP E+S+E E + +++P + L S+ WKERL + ++ VE ++
Sbjct: 573 NKKGLETKEIVEP-ELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELME 631
Query: 673 NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERV 732
+ + LV+++ PGW E N QV Q + ++ +A F K + L G+ +++
Sbjct: 632 RTEMPCQALVKMLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKI 690
Query: 733 ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 792
D+K +A + +T +EA + E++ + KNPK SE + W+ +A+++FG S
Sbjct: 691 GDVKCGNNAKEAMTAIAEACMLPWTAEQVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSE 750
Query: 793 LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY 852
L +K I K T L ++ A R + I LLG ++ +VGP ++ D KPALLS +DAE+
Sbjct: 751 LNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEF 809
Query: 853 EKNPFEGTVVPKKTVRASESTSSVSSGGS------------DGLPREDISGKFTPTLVKS 900
+K + P + + A STS+ G D LPR +IS K T LV
Sbjct: 810 QKMQGQSPPAPTRGI-AKHSTSATDEGEDGEEPGEGGNDVVDLLPRIEISDKITSELVSK 868
Query: 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 960
+ +WK+R E ++ V I+ EA K IQP GEL L+GRL DSNK LV TL L
Sbjct: 869 IGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQ 926
Query: 961 VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 1020
+A AMG + + K + ++ LGD+K ++R L ++AW + + + +
Sbjct: 927 LAVAMGANIRQHVKNLGIPVITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEE 986
Query: 1021 DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEIL 1079
K R++L WL+++L L P L P + + D++ DVRK A+ + +
Sbjct: 987 LKKENPFLRQELLGWLAEKLPTLRSTPTDLILCVPHLYSCLKDRNGDVRKKAQDALPFFM 1046
Query: 1080 RAGGQETIEK---NLKDIQGPALALILERIKLNGASQVS---------MGPTSKSSSK-V 1126
G E + K LK + +LE+ K N S+ + MG ++ + ++ +
Sbjct: 1047 MHLGYEKMAKATGKLKPTSKDQVLAMLEKAKANMPSKPAAPAKAMSKPMGGSAPAKTQPI 1106
Query: 1127 PKSASNGVS----------KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDS 1176
P + VS K +SS+ +G + S ++++ +S + V +
Sbjct: 1107 PAPVEDSVSSTIEAKPDLKKAKAPGVSSKAKSVQGKKVPSKTTLKEDDDKSGPIFIVVPN 1166
Query: 1177 NKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEM 1232
KE R R + V ++ F PR E I++L+ M + L + +DF+ L +
Sbjct: 1167 GKEQRMRDEKGLKVLKWNFTTPRDEYIEQLKTQMSTCVAKWLQDEMFHSDFQHHNKALAV 1226
Query: 1233 LQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE 1292
+ L S + +I LD++L+W L+F +NT+ L+K LE+L LF L +E Y LTE+E
Sbjct: 1227 MVDHLESEKDGVISCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENE 1286
Query: 1293 AAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVD 1352
A+ F+P L+ K G + +R+ +R + ++ Y A+K P+I+EG +SKN++ R EC++
Sbjct: 1287 ASSFIPYLILKVGEPKDVIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLE 1346
Query: 1353 LVGFLIDHHGAEISGQL--KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVG 1410
+G LI+ +G + K+L+ +A +RD +R AALNT+ T Y + G+ +++ +G
Sbjct: 1347 ELGCLIESYGMNVCQPTPGKALKEIAIHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIG 1406
Query: 1411 KLTDAQKSMLDDRFKWKVREME----KKKEGKPGEAR------AALRRSVRENGSDIAEQ 1460
L++ SML++R K + K+ E KP + LR+ E+ S Q
Sbjct: 1407 NLSEKDMSMLEERIKRSAKRPSAAPVKQAEEKPQRTQNINSNANMLRKGPAEDMSSKLNQ 1466
Query: 1461 SGDVSQSVSGPTLMRRNY 1478
+ +S ++RR +
Sbjct: 1467 ARSLSGHPEAAQMVRREF 1484
|
Binds to the plus end of microtubules and regulates microtubule dynamics and microtubule organization. Promotes cytoplasmic microtubule nucleation and elongation. Plays a major role in organizing spindle poles. Mus musculus (taxid: 10090) |
| >sp|Q1ZXQ8|MTAA_DICDI Centrosomal protein 224 OS=Dictyostelium discoideum GN=mtaA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (873), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 264/999 (26%), Positives = 495/999 (49%), Gaps = 63/999 (6%)
Query: 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCL-TGRPKTVEK 151
GP FKK +AD N Q++AL+ L A++ D ++A + K + RP+ EK
Sbjct: 49 GPQFKKILADINPMSQERALEPLSAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEK 107
Query: 152 AQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKM 211
+L +E ++ + ++ + K + K ++ ++ + QAL FG K IP K ILK
Sbjct: 108 TIECLLLTIEADSAEPVVEALLKGTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQ 167
Query: 212 LPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTA 270
F+++D+ +R + L +E+ RWIGK + ++ E + K L+ + + + A
Sbjct: 168 FSPWFENRDKGIRDQASELFIEIYRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPA 226
Query: 271 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFW 330
P + R+E K L S+ + P +V EID Y L+ V+IL P S F+
Sbjct: 227 VPLKYTRSEAAKALANA--SKGIQAKP------EVVEEIDPYSLMTAVNIL-PKLTSEFY 277
Query: 331 EGVKATKWSERKDAVAEL-TKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIG 389
EG++A KW ER + + +L T L +T +I DF+E+C+ LKK++ DVN+ + +A+ +IG
Sbjct: 278 EGLQAKKWQERSEQMDKLVTILTNTPKIETADFSELCKALKKILADVNVMIVQKAVVSIG 337
Query: 390 NLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 449
LA LR F+ + + +LEK KEKK +V +S+ T+ ++ ++L D+++++
Sbjct: 338 LLADSLRGGFTSYVKPFITPILEKFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTA 396
Query: 450 SVKNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVL 508
++++KVP ++ L ++ I + K A + KV K I ME LND +RD A
Sbjct: 397 TMQSKVPQIKQEVLVFICNSITNTKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAF 456
Query: 509 AAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEAS 568
AA+ +G R + + ++D ++ K+ + + VAT + + + ++
Sbjct: 457 AALGGIIGERAMTPYLNQIDPIKAKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLP 512
Query: 569 ESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 628
SS S K+P +A S + + + P
Sbjct: 513 VSS----------SNKKPAAAT------------GNSKSSSTTTPTGRSSNSSPLPPPPS 550
Query: 629 SLEEIESRL--GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAV--QNLDQSVEILVRL 684
S ++I+++L ++ + + L WK+RL+A+ + + V+ + +++ E +++L
Sbjct: 551 SSDDIKNKLIGAGIVNNEIIEGLGKTQWKDRLQAVDDILENVKGLTADSINGMSESIIQL 610
Query: 685 VCMLPGWSEKNVQVQQQVIEVINYLAATATKFP-KKCVVLCLLGISERVADIKTRAHAMK 743
+C P E N QV + + + F ++C L E++ D+K + + +
Sbjct: 611 LCDKPSLKESNFQVLSSIFSIFIQCCKNDSNFTQQRCANSYLTTCIEKLTDVKLKEISSE 670
Query: 744 CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-----KLKDL 798
L + E++ P +F +Y+ +HKNPK++++ ++W+ A+++FG+ +LK L
Sbjct: 671 LLFSTGESITPHAVFTSIYQFTSNHKNPKIIADSLVWIQQAIDEFGIGCCSNGIQQLKPL 730
Query: 799 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFE 858
+D+ K L+S+ + + IKLL + +G + FL DVK + LD E++K +
Sbjct: 731 LDYTKQC-LESTNPDVKKSAIKLLCTIKINIGATLTDFLGDVKKPTMEVLDREFQKIRDQ 789
Query: 859 GTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK 918
VP + + S PR DIS K TP ++ +L +WK R ++++ + +
Sbjct: 790 KPPVPNRQWKGMPPPGSAPVQIE--FPRVDISVKLTPAIITNLSDANWKTRSDALDEIER 847
Query: 919 ILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAM-GPAVEKSSKGVL 977
I+ +AN++IQP G L L+ RL D+N+ + TL +G ++ AM G + EK ++ ++
Sbjct: 848 IIIDANRKIQPK-LGGLIPALKNRLTDNNQKCTITTLNIIGMLSQAMGGQSFEKHARLLI 906
Query: 978 SDILKCLGDNKKHMRECTLTVLDAWLAA-VHLDKMVPYVTTALTDAKLGAEGRKDLFDWL 1036
IL LGD+KK +R+ ++ ++ + + + D + + + A RK+ W
Sbjct: 907 PGILLLLGDSKKPVRDAVISCMNVIVQSDLGFDVFIGSLAAPMIQE--SAFTRKESLAWT 964
Query: 1037 SKQLTGLSGFP---DAAHLLKPASIAMTDKSSDVRKAAE 1072
+T + P + L K + DKS+++R A+
Sbjct: 965 IVNVTNMKAAPIPSEINTLAKGIISCLQDKSAEIRSLAD 1003
|
Involved in regulation of microtubule dynamics. Regulates the interaction of microtubules tips with the centrosome and cell cortex. Dictyostelium discoideum (taxid: 44689) |
| >sp|O94534|ALP14_SCHPO Spindle pole body component alp14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp14 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 162/604 (26%), Positives = 265/604 (43%), Gaps = 98/604 (16%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIV 60
MS++++ ++ KLP E R++HK WKVR A + + D DN
Sbjct: 1 MSQDQE--EDYSKLPLESRIVHKVWKVRLSAYEECSKSFSLSADGSDNCFE--------- 49
Query: 61 SDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLK 120
+W L+K + DSN Q+ A +AY +
Sbjct: 50 -----LWNNQSE----------------------LWKSVLTDSNVAAQEAGTAAFVAYCR 82
Query: 121 AADADAGRYAKEVCD-AIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKN 178
+D A+E+ +I+ KCLT R T E A ML VE ++ ++ + ++
Sbjct: 83 FSDPSHLLKAREISVLSISEKCLTSPRAGTRENALEALMLLVEADSAAPVIESIIPSLSA 142
Query: 179 KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI 238
+ K + + + + +FGAK+IP K I+ + LF H D+NVR + LT+ + RW
Sbjct: 143 RSPKVIASNVAAIASLVEQFGAKVIPSKMIIPHISNLFGHADKNVRKEASRLTVNIYRWT 202
Query: 239 GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPS 298
G DP+K +LF+ +R KELE + P ++ R L S+ P+
Sbjct: 203 G-DPLKDLLFKDLRPVQTKELESLFAEL--PTEPPKQTRF---------LKSQQPTSEPN 250
Query: 299 EESTADVPPEI-----------DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAE 347
E+ + P + D+++LV+ VD+L P + ++KW +RK+A+ +
Sbjct: 251 VETQVEEQPALENEESEPEPSDDQFDLVEEVDVL-PNVDPNLETLMASSKWKDRKEALDK 309
Query: 348 LTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406
L + S +I DF + L K ++ D NI V + A I +A+GLR++FS +
Sbjct: 310 LLPVLSQPKIKDNDFFNLVAILTKSVSKDANIMVVINAAHCIQAMAKGLRSNFSKYASTS 369
Query: 407 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 466
+ LLE+ KEKK V ESL+ + A+ L+ D+ E + + NK P ++S +
Sbjct: 370 INALLERSKEKKANVIESLSSAMDAVLATSSLD--DLAELIASFAGNKNPQIKSSCFSLF 427
Query: 467 T------------FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514
+ F ++T +KA V V + P VR AA L + K
Sbjct: 428 SRSFSNMTSLPSKFTVDTCAKACVPGVSDTFEP------------VRSAAAEALGVLMKL 475
Query: 515 VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 574
VG R + + + LDD+R++K+ T T A+ T V + ES V
Sbjct: 476 VGERAINQYLSPLDDIRKSKIRSF-------YETATVKAKAPTKKSKVKPSKQEESKVVV 528
Query: 575 KSAA 578
S A
Sbjct: 529 PSNA 532
|
Required for bipolar spindle formation and proper chromosome segregation. Has a role in connecting the kinetochores and the plus end of pole to chromosome microtubules. Also required for the activation of the spindle checkpoint pathway. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q09933|DIS1_SCHPO Phosphoprotein p93 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dis1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 119/481 (24%), Positives = 218/481 (45%), Gaps = 42/481 (8%)
Query: 95 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKE-VCDAIAAKCLTGRPKTVEKA- 152
L+K+ + DSN P Q+ A+ +L +L + AK V + KCL +++ A
Sbjct: 53 LWKQGLCDSNVPTQEHAVKSLRCFLDKSRQKGVNSAKSFVVAPLLEKCLPSPRQSIRDAS 112
Query: 153 -QAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKM 211
QA+ +L + +A+D L+ + A + K K V +I + L FG + P K+
Sbjct: 113 HQALLIL-AKSDALDYVLEGLFSAARVKHPKQAVASIKELNSLLENFGIPALSPIPFYKL 171
Query: 212 LPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV----- 266
+P LF D+N+R + L++ L W+G + KT +F +++ +LE NV
Sbjct: 172 IPTLFAQSDKNIRQEASNLSITLYAWVG-NAFKTHVFPQLKQIQVSDLEASFQNVTSRTT 230
Query: 267 -------------------SGTARPTRKIRAEQDKELG--QELISEDVGPG-----PSEE 300
S A+P + ++ + Q S P PS+
Sbjct: 231 TGGHISNSLNTQEVVLPSFSSNAKPKPHLSSKSSSQGNTLQRSTSSFSTPNRKVSQPSDF 290
Query: 301 STADVPPEIDEYELV---DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRI 357
S + + + + PVD+L+ L F + + KW +RK+A+ + + S
Sbjct: 291 SASPSRSIVSPAKNIVGSTPVDVLSKLTPE-FHTALSSPKWKDRKEALESMVPVCSNPVY 349
Query: 358 APGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK 417
GD++E+ R + K + D N+ V A + ++A+ LR F + +LP L ++ KE+
Sbjct: 350 QEGDYSELLRVIAKSLKDANVVVVGVAALLLTHIAKALRKGFLPYTGIVLPSLFDRFKER 409
Query: 418 KPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 477
K ++ SL A+ ++ LN D++++ +K+K P V++ TL W+ C++ +
Sbjct: 410 KSSLVHSLLDAANAIFESCGLN--DIMDETLEFLKHKNPQVKTETLRWLNRCLQLTDVCP 467
Query: 478 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 537
+ +C+ +ND VR A +VLA + + L + I LD + K+ E
Sbjct: 468 PRASLETLCSLCVTLINDTFEPVRMATTNVLATLVQIFSQPVLSKYIVGLDPKKLPKILE 527
Query: 538 M 538
+
Sbjct: 528 L 528
|
Has a role in sister chromatid separation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P46675|STU2_YEAST Protein STU2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STU2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 194/790 (24%), Positives = 353/790 (44%), Gaps = 144/790 (18%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQ-FSFI 59
MS EE++ + LP E+RL +K WK R EA +EL Q F
Sbjct: 1 MSGEEEV--DYTTLPLEERLTYKLWKARLEA------------------YKELNQLFRNS 40
Query: 60 VSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGP-LFKKTVADSNAPVQDKALDALIAY 118
V D++ R IY P LF + + DSN Q++A+ AL +
Sbjct: 41 VGDIS--------------RDDNIQIY----WRDPTLFAQYITDSNVVAQEQAIVALNSL 82
Query: 119 LKAADADAGRYAKEVC------DAIAAKCLTG-RPKTVEKAQAVFMLWVEL-----EAVD 166
+ A + + + A + + K LT R T ++ + + L ++V+
Sbjct: 83 IDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVE 142
Query: 167 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPK----RILKMLPELFDHQDQN 222
+ + EK K+ K + A + +++ ++ FG + + +LK +P+L H D+N
Sbjct: 143 LVIPFFEK----KLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRN 198
Query: 223 VRASSKGLTLELCRWIGK--DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKI---- 276
VR+ + L +E+ + G D ++ ILF+K++ K+L V ++ +
Sbjct: 199 VRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDEPSSSKMLFEWE 258
Query: 277 RAEQDKELGQE--------LISEDVGPGPSEES-------TADVPP-------EIDEYEL 314
+ E +K+ QE ++S D G ++ D+PP +ID + +
Sbjct: 259 KRELEKKRSQEEEARKRKSILSNDEGEYQIDKDGDTLMGMETDMPPSKQQSGVQIDTFSM 318
Query: 315 VDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL--TKLASTKRI--APGDFTEVCRTLK 370
+ IL L K F E + ++KW +R +A+ E + L+ TK++ +++ +
Sbjct: 319 LPEETILDKLPK-DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYG 377
Query: 371 KLIT-DVNIAVAVEAIQAIGNLARGLRT-HFSGSS-RFLLPVLLEKLKEKKPTVAESLTQ 427
+I D NI A Q++ + L+T FS + LL++ KEKKP+V E++ +
Sbjct: 378 HIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRK 437
Query: 428 TLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLVR--SLTLNWVTFCIETSSKAAVLK 480
L + K A D+++D+ +K+K P +R L + E + + +
Sbjct: 438 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 497
Query: 481 VHKD-YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 539
KD VPI ++ +ND P +R F A + K GM +++E LD+++R K+ E +
Sbjct: 498 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETV 557
Query: 540 AG-SGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAP----ASK 594
+A+G++ + ++T+ + P E+ F+ K +S+L KR V+++P
Sbjct: 558 KTLPNFSIASGSTHSTIETNKQTGP----MENKFLLK-KSSVLPSKR-VASSPLRNDNKS 611
Query: 595 KGGPV-------KPS--AKKDGSGKQETSKLTEAPEDV-----EPSEMSLEEIESRLGSL 640
K P+ KPS A + S TSK P++V + +E +EE + RL L
Sbjct: 612 KVNPIGSVASASKPSMVAANNKSRVLLTSKSLATPKNVVANSTDKNEKLIEEYKYRLQKL 671
Query: 641 IPADTVGQLKSAVW-KER---LEAISSLRQ-QVEAVQNLDQSVEILVRLVCMLPGWSEKN 695
Q +W KER LE +++ ++E ++ + E L L +EKN
Sbjct: 672 -------QNDEMIWTKERQSLLEKMNNTENYKIEMIKENEMLREQLKEAQSKL---NEKN 721
Query: 696 VQVQQQVIEV 705
+Q++ + I+V
Sbjct: 722 IQLRSKEIDV 731
|
May play a role in the attachment, organization, and/or dynamics of microtubule ends at the spindle pole body. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|G5EEM5|ZYG9_CAEEL Zygote defective protein 9 OS=Caenorhabditis elegans GN=zyg-9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 123/232 (53%), Gaps = 10/232 (4%)
Query: 308 EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKL--ASTKRIAPGDFTEV 365
E D ++ +D D+L+ + GF +++ KW ERK+A+ L +L A+ K ++ +
Sbjct: 286 EADPWDFLDAFDVLSKM-PDGFDTNIESKKWQERKEALEGLLQLITANPKLDPKANYGAL 344
Query: 366 CRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAES 424
L+K++ D NI VA A I +A GLRT F + + P++ EK KEKKPT+ +
Sbjct: 345 VERLQKVLEKDANINVAALAANCITGIANGLRTKFQPFAVSVTPIIFEKFKEKKPTLRDP 404
Query: 425 LTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFC-IETSSKAAVLKVHK 483
L + A+ NL V E V ++ P +++ T ++ C ++ +S+ K K
Sbjct: 405 LVACIDAV--VATTNLEAVGEIVLAALGKPNPSIKTQTDLFLQRCFMKLNSQTMPKKTLK 462
Query: 484 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 535
+P ++ D EVR+A+++ + A+ +++G +P S++ L D+ + L
Sbjct: 463 TLIPSLIKHSGDSDSEVREASYAAMGAMMRAIGEKP---SLQLLADIASDNL 511
|
Plays a major role in organizing microtubules and spindle poles during mitosis and meiosis in one-cell stage embryos. Required for default nucleus positioning in oocytes. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q2UCC9|STU1_ASPOR Protein stu1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=stu1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 139/336 (41%), Gaps = 44/336 (13%)
Query: 365 VCRTLKKLITDVNIAVAVEAIQAIGNLARGL----RTHF-SGSSRFLLPVLLEKLKEKKP 419
+ +L+ IT + A+ G+ + L + H S +R PVLLE+L + K
Sbjct: 46 IFESLRLAITSHHAALYAAGFSTFGHFLKRLFIQDQAHIVSAYARHFCPVLLERLGDHKE 105
Query: 420 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL 479
V Q + A ++ V +V + KN P + +L W++ S +L
Sbjct: 106 RVRAQAAQIFTDLWPAASADVEHYVLEVALTGKN--PKAKETSLIWLS---NMSRNHGLL 160
Query: 480 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL--DDVRRNKLSE 537
+ YVP + CL D VR A S + + + R +++ +VR++ ++
Sbjct: 161 --FRSYVPSVVSCLEDADSFVRHTAKSTVVELFQGAPARAKADLTKEMTAQNVRQSIVNA 218
Query: 538 MIAGSGGDVATGTSSARVQTSGGSVPSVE------ASESSFVRKSAASMLSGK--RPVSA 589
+ A G + + T+ R + P + AS + V + A+++S RP
Sbjct: 219 VYANIGLEDHSSTARPRSRVEPRYTPCTDSHPLRSASRAEVVHQQPAAVVSSAPLRPSKE 278
Query: 590 APASKKGGPVK--PSAKKDGSGK-----------------QETSKLTEAPEDVEPSEMSL 630
A + P+K P + K G+ + +S+ EAP+ + +E S
Sbjct: 279 ATPMVEPEPIKSRPGSSKSDKGRTIAAAPEAEKAPHMETARPSSQDGEAPQPLH-AETS- 336
Query: 631 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 666
+++E L PA G+ W+ R + I+SLR+
Sbjct: 337 KQVEDLFRVLSPA-FEGRESEDNWRHREKYITSLRR 371
|
Microtubule binding protein that promotes the stabilization of dynamic microtubules. Required for mitotic spindle formation. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2052 | ||||||
| 255587410 | 1992 | microtubule associated protein xmap215, | 0.963 | 0.992 | 0.828 | 0.0 | |
| 224061471 | 2036 | microtubule organization protein [Populu | 0.980 | 0.988 | 0.826 | 0.0 | |
| 224115548 | 2025 | microtubule organization protein [Populu | 0.979 | 0.992 | 0.823 | 0.0 | |
| 356533943 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.978 | 0.986 | 0.802 | 0.0 | |
| 356574625 | 2035 | PREDICTED: protein MOR1-like [Glycine ma | 0.978 | 0.986 | 0.802 | 0.0 | |
| 19912731 | 2029 | microtubule bundling polypeptide TMBP200 | 0.978 | 0.989 | 0.773 | 0.0 | |
| 449434204 | 2005 | PREDICTED: protein MOR1-like [Cucumis sa | 0.968 | 0.991 | 0.775 | 0.0 | |
| 297823359 | 1980 | hypothetical protein ARALYDRAFT_482523 [ | 0.959 | 0.993 | 0.752 | 0.0 | |
| 30686489 | 1978 | microtubule organization 1 protein [Arab | 0.958 | 0.993 | 0.746 | 0.0 | |
| 413952123 | 1996 | hypothetical protein ZEAMMB73_280693 [Ze | 0.961 | 0.988 | 0.698 | 0.0 |
| >gi|255587410|ref|XP_002534264.1| microtubule associated protein xmap215, putative [Ricinus communis] gi|223525620|gb|EEF28119.1| microtubule associated protein xmap215, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3458 bits (8966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1712/2066 (82%), Positives = 1835/2066 (88%), Gaps = 88/2066 (4%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIV 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAA CDSITDPKD R+RE G
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAAFCDSITDPKDPRLREFG------ 54
Query: 61 SDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLK 120
PLF+KTVADSNAPVQ+KALDALIA+L+
Sbjct: 55 ---------------------------------PLFRKTVADSNAPVQEKALDALIAFLR 81
Query: 121 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKV 180
AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLWVELEAVDVFLD MEKAIKNKV
Sbjct: 82 AADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQASFMLWVELEAVDVFLDAMEKAIKNKV 141
Query: 181 AKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 240
AKAVVPAIDVMFQALSEFGAKI+PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK
Sbjct: 142 AKAVVPAIDVMFQALSEFGAKIVPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 201
Query: 241 DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEE 300
DPVK+ILFEKMRDTMKKELE ELVNV+GTA+P+RKIR+EQDKE E +SE GPG SEE
Sbjct: 202 DPVKSILFEKMRDTMKKELEAELVNVTGTAKPSRKIRSEQDKEPEPEAVSEVAGPGQSEE 261
Query: 301 STADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 360
+ AD P EIDEYELVDPVDILTPLEKSGFW+GVKATKWSERK+AVAELTKLASTKRIAPG
Sbjct: 262 AAADAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLASTKRIAPG 321
Query: 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 420
DF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS SSRFLLPVLLEKLKEKKP
Sbjct: 322 DFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSASSRFLLPVLLEKLKEKKPA 381
Query: 421 VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 480
+ ESL QTLQA+HK+GCL+LVD+VEDVKT+VKNKVPLVRSLTLNWVTFCIETS+KA +LK
Sbjct: 382 LTESLAQTLQALHKSGCLSLVDIVEDVKTAVKNKVPLVRSLTLNWVTFCIETSNKAVILK 441
Query: 481 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 540
VHKDYVPICME LNDGTP+VRD+AFS LAAIAKSVGMRPLERS+EKLDDVRR KLSEMI
Sbjct: 442 VHKDYVPICMESLNDGTPDVRDSAFSALAAIAKSVGMRPLERSLEKLDDVRRKKLSEMIG 501
Query: 541 GSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 600
GSGG+ + GTSSA VQ GSV S EASE SFVR+SAASMLSGK+P+ AAPA+KKGGP K
Sbjct: 502 GSGGNASGGTSSATVQAVSGSVSSTEASEGSFVRRSAASMLSGKKPLPAAPANKKGGPTK 561
Query: 601 PSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 658
K DG+G+ ETSK E PEDVEP+EMSLEEIESRLGSLI A+TV QLKS VWKERL
Sbjct: 562 SGTNKKGDGAGRTETSKAIEPPEDVEPAEMSLEEIESRLGSLIQAETVSQLKSTVWKERL 621
Query: 659 EAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 718
EAISSL+QQVE +Q LDQSVEIL+RL+C +PGW+EKNVQVQQQ+IEVI YLA+TATKFPK
Sbjct: 622 EAISSLKQQVEGLQGLDQSVEILIRLLCAIPGWNEKNVQVQQQMIEVITYLASTATKFPK 681
Query: 719 KCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGI 778
KCVVLCLLG SERVADIKTRAHAMKCLTTFS
Sbjct: 682 KCVVLCLLGTSERVADIKTRAHAMKCLTTFS----------------------------- 712
Query: 779 LWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 838
VEDFGVS LKLKDLIDFCKD GLQSS AA+RNATIKLLGALHK+VGPDIKGFL+
Sbjct: 713 ------VEDFGVSLLKLKDLIDFCKDIGLQSSVAASRNATIKLLGALHKYVGPDIKGFLS 766
Query: 839 DVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 897
DVKPALLSALDAEY+KNPFEG + PKKTVRASES SSVS+GG D LPRED+SGK TPTL
Sbjct: 767 DVKPALLSALDAEYDKNPFEGASAAPKKTVRASESMSSVSAGGLDSLPREDVSGKVTPTL 826
Query: 898 VKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLIT 957
+KS+ESPDWKVRLESIEAVNKI+EEANKRIQP GTGELFG LRGRLYDSNKNLVMATL T
Sbjct: 827 LKSMESPDWKVRLESIEAVNKIIEEANKRIQPTGTGELFGALRGRLYDSNKNLVMATLTT 886
Query: 958 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTT 1017
+G VASAMGPAVEKSSKG+L+DILKCLGDNKKHMREC LT +D+WLAAVHLDKM+PY+ T
Sbjct: 887 IGGVASAMGPAVEKSSKGILADILKCLGDNKKHMRECALTTIDSWLAAVHLDKMIPYIAT 946
Query: 1018 ALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1077
AL DAKLGAEGRKDLFDWLS+QL+GLS F DA HLLKPA AMTDKSSDVRKAAEACI E
Sbjct: 947 ALIDAKLGAEGRKDLFDWLSRQLSGLSDFSDAVHLLKPAGSAMTDKSSDVRKAAEACITE 1006
Query: 1078 ILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--------VSMGPTSKSSSKVPKS 1129
+LR GQET+EKNLKD+ GPALAL+LER+K GA Q +SMGPTSK+++KV KS
Sbjct: 1007 VLRVSGQETVEKNLKDLHGPALALVLERVKPYGAFQESFDSAKTISMGPTSKTNAKVGKS 1066
Query: 1130 ASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRF 1189
A+NGV KH NR SSR IPTKG+R E +MSVQD AVQSQALLNVKDSNKEDRERMVVRRF
Sbjct: 1067 ATNGVPKHANRITSSRAIPTKGSRSEPMMSVQDRAVQSQALLNVKDSNKEDRERMVVRRF 1126
Query: 1190 KFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLD 1249
KFE+ RIEQIQ+LENDMMKYFREDLHRRLLS DFKKQVDGLEMLQKALPSI K++IEVLD
Sbjct: 1127 KFEELRIEQIQDLENDMMKYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKELIEVLD 1186
Query: 1250 ILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIE 1309
ILLRWFVLQFCKSNTTCLLKVLEFLPELFD LRDE Y+LTESEAA+FLPCL+EK GHNIE
Sbjct: 1187 ILLRWFVLQFCKSNTTCLLKVLEFLPELFDMLRDEAYTLTESEAAIFLPCLIEKLGHNIE 1246
Query: 1310 KVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQL 1369
KVREKMRELTKQIV+ YSA+KT PYILEGLRSKNNRTRIE DLVGFLIDHH AEISGQL
Sbjct: 1247 KVREKMRELTKQIVHAYSASKTFPYILEGLRSKNNRTRIESADLVGFLIDHHVAEISGQL 1306
Query: 1370 KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVR 1429
KSLQIVASLTAERDGE RKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVR
Sbjct: 1307 KSLQIVASLTAERDGETRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVR 1366
Query: 1430 EMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVERSI 1489
EMEK+KEG+PG++RAALRRSVRENG D+AEQSG+VSQSVSGPT +R+NY ELH++R I
Sbjct: 1367 EMEKRKEGRPGDSRAALRRSVRENGFDLAEQSGEVSQSVSGPTFLRKNYSPHELHMDRQI 1426
Query: 1490 MPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKDAD 1549
MP A+ SVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQAT DPEGS MDELVKDAD
Sbjct: 1427 MPHAVTSVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATGDPEGSAMDELVKDAD 1486
Query: 1550 RLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLL 1609
RLVSCLA+KVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLA+AV+ESTLDSLITELLL
Sbjct: 1487 RLVSCLASKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAHAVKESTLDSLITELLL 1546
Query: 1610 WLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASNES 1669
WLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRP+DPSRWPS AS+E+
Sbjct: 1547 WLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPVDPSRWPSSASSET 1606
Query: 1670 FAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDK 1729
FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIH+YLQELGMEEIRRRAGADDK
Sbjct: 1607 FAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHIYLQELGMEEIRRRAGADDK 1666
Query: 1730 PLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTSTGPG 1789
PLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTSTGP
Sbjct: 1667 PLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTSTGPV 1726
Query: 1790 GQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKVDI 1849
GQTHWGDSAANNP+SAT+SADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKVDI
Sbjct: 1727 GQTHWGDSAANNPSSATHSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKVDI 1786
Query: 1850 FAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSPEFAPLSPVHT 1909
FAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS+PM+TPPP+AL SSPE+APLSPVHT
Sbjct: 1787 FAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSLPMSTPPPSALTASSPEYAPLSPVHT 1846
Query: 1910 NSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENPLSDQRNERF--GVTSG 1967
NS+NDAKSMN KSEP NF+LPP+Y+EDNR I S+ L EN L+DQRNE+F GVT+G
Sbjct: 1847 NSINDAKSMNTKSEPANFHLPPAYSEDNRTVNTITSRGLISENSLADQRNEKFLSGVTTG 1906
Query: 1968 TLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQ-SRSSDRASVENPAQGSV 2026
TLDAIRERMKSMQLAAAAGNPD GNRPL +NDN++NGLS Q R+ D ENP QG V
Sbjct: 1907 TLDAIRERMKSMQLAAAAGNPDSGNRPLTIVNDNLSNGLSGQVPRAPDSVGFENPVQGGV 1966
Query: 2027 LPMDEKALSGLQARMERLKSGTIEPL 2052
LPMDEKALSGLQARMERLKSG I+ L
Sbjct: 1967 LPMDEKALSGLQARMERLKSGAIDSL 1992
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224061471|ref|XP_002300496.1| microtubule organization protein [Populus trichocarpa] gi|222847754|gb|EEE85301.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3447 bits (8938), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1714/2075 (82%), Positives = 1852/2075 (89%), Gaps = 62/2075 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIV 60
MSEEEKLLKEAKKL WEDRLLHKNWKVRNEANIDLA+LCDSI+DPKD+R+RE
Sbjct: 1 MSEEEKLLKEAKKLAWEDRLLHKNWKVRNEANIDLASLCDSISDPKDSRLREFA------ 54
Query: 61 SDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLK 120
PLF+KTVADSNAPVQ+KALDALIA+L+
Sbjct: 55 ---------------------------------PLFRKTVADSNAPVQEKALDALIAFLR 81
Query: 121 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKV 180
AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLWVELEAVDVFLD MEKAIKNKV
Sbjct: 82 AADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLWVELEAVDVFLDAMEKAIKNKV 141
Query: 181 AKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 240
AKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK
Sbjct: 142 AKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 201
Query: 241 DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEE 300
DPVK+ILFEKMRDTMKKELE ELVNV GTA+P+RKIR+EQDKE E +SE VG GPSEE
Sbjct: 202 DPVKSILFEKMRDTMKKELEAELVNVKGTAKPSRKIRSEQDKEPEPEGVSEVVGSGPSEE 261
Query: 301 STADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 360
A+ P EIDEY+LVDPVDIL PLEK+GFW+GVKATKWSERK+AVAELTKLASTKRIAPG
Sbjct: 262 VAAEAPQEIDEYDLVDPVDILGPLEKAGFWDGVKATKWSERKEAVAELTKLASTKRIAPG 321
Query: 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 420
DF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT
Sbjct: 322 DFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 381
Query: 421 VAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNKVPLVRSLTLNWVTFCIETSSK 475
+ E+L QTLQAMH AGCLNL D++E VKT+VKNKVPLVRSLTLNWVTFCIETS+K
Sbjct: 382 LTEALAQTLQAMHTAGCLNLADIIEGNLRDYVKTAVKNKVPLVRSLTLNWVTFCIETSNK 441
Query: 476 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 535
A +LKVHKDYVPICMECLNDGTP+VRD+AFSVLAA+AKSVGMRPLERS+EKLDDVRR KL
Sbjct: 442 AVILKVHKDYVPICMECLNDGTPDVRDSAFSVLAAVAKSVGMRPLERSLEKLDDVRRKKL 501
Query: 536 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 595
SEMIAGSG V SS VQ GS+ SVE SE SFV+KSAASMLSGKRP AA A+KK
Sbjct: 502 SEMIAGSGDGVPAVASSGPVQAVRGSMSSVETSEGSFVKKSAASMLSGKRPAPAAAANKK 561
Query: 596 GGPVKP--SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 653
P K S K DG+G+ E+S+ E PEDVEP+EMSLEEIE+RLGSLI ADTV QLKSAV
Sbjct: 562 AAPTKSGVSKKGDGAGRAESSRAIEPPEDVEPAEMSLEEIETRLGSLIQADTVSQLKSAV 621
Query: 654 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA 713
WKERLEAISS + QVE +QNLDQSVEIL+RL+C +PGW+EKNVQVQQQVIEVI YLA+TA
Sbjct: 622 WKERLEAISSFKLQVEGLQNLDQSVEILIRLLCAIPGWNEKNVQVQQQVIEVITYLASTA 681
Query: 714 TKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKV 773
+KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGF+F+RLYKIMK+HKNPKV
Sbjct: 682 SKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFVFDRLYKIMKEHKNPKV 741
Query: 774 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 833
LSEGI+WMVSA++DFGVSHLKLKDLIDFCKDTGLQSS AA+RNATIKLLGALHKFVGPDI
Sbjct: 742 LSEGIIWMVSAIDDFGVSHLKLKDLIDFCKDTGLQSSVAASRNATIKLLGALHKFVGPDI 801
Query: 834 KGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSVSSGGSDGLPREDISGK 892
KGFLADVKPALLSALDAEY+KNPFEG + PKKTVR SESTSSVS GG D LPREDISGK
Sbjct: 802 KGFLADVKPALLSALDAEYDKNPFEGASAAPKKTVRTSESTSSVSGGGLDSLPREDISGK 861
Query: 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 952
TPTL+KSLESPDWKVRLESIEAVNKILEEANKRIQP GTGELFG LRGRLYDSNKNL+M
Sbjct: 862 ITPTLIKSLESPDWKVRLESIEAVNKILEEANKRIQPTGTGELFGALRGRLYDSNKNLIM 921
Query: 953 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 1012
L T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTL LD+W+AAVHLDKMV
Sbjct: 922 TALTTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLNTLDSWVAAVHLDKMV 981
Query: 1013 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAE 1072
PY+T AL + KLGAEGRKDLFDWLSKQL+G S F DA HLLKPAS AMTDKSSDVRKAAE
Sbjct: 982 PYITAALIETKLGAEGRKDLFDWLSKQLSGSSEFSDAIHLLKPASSAMTDKSSDVRKAAE 1041
Query: 1073 ACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ------------VSMGPTS 1120
ACI EILR GQE IEKNLKDIQGPALAL+LER++ G Q +SMGP+S
Sbjct: 1042 ACISEILRVCGQEMIEKNLKDIQGPALALVLERVRPAGGFQGLSFESFESTKTISMGPSS 1101
Query: 1121 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1180
K+S KV K+ASNG+SKH NR+IS+RVIP KG++PE MS QD AVQSQALLNVKDSNKED
Sbjct: 1102 KTSVKVGKAASNGISKHANRSISARVIPMKGSKPEPTMSFQDRAVQSQALLNVKDSNKED 1161
Query: 1181 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSI 1240
RERMVVRRFKFE+PR+EQ+Q+LE+DMMKYFREDL+RRLLS DFKKQVDGLEML KALPSI
Sbjct: 1162 RERMVVRRFKFEEPRMEQVQDLESDMMKYFREDLNRRLLSPDFKKQVDGLEMLHKALPSI 1221
Query: 1241 RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1300
K+IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLP+LFD LRDE Y+L+ESEAA+FLPCL
Sbjct: 1222 GKEIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPDLFDRLRDEAYTLSESEAAIFLPCL 1281
Query: 1301 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1360
+EK GHNIEKVREKMRELTKQIV YSA K+ PYILEGLRSKNNRTRIEC DLVGFLIDH
Sbjct: 1282 IEKLGHNIEKVREKMRELTKQIVQAYSAAKSFPYILEGLRSKNNRTRIECADLVGFLIDH 1341
Query: 1361 HGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSML 1420
HGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYKILGEDIWR++GKLTDAQKSM+
Sbjct: 1342 HGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYKILGEDIWRFLGKLTDAQKSMI 1401
Query: 1421 DDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGH 1480
DDRFKWKVREMEK+KEG+PG+ARAALRRSVRENGSDIAEQSG++SQSVSGP + R+NYG
Sbjct: 1402 DDRFKWKVREMEKRKEGRPGDARAALRRSVRENGSDIAEQSGELSQSVSGPIIARKNYGT 1461
Query: 1481 SELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSV 1540
ELH+E +MPRAL SV+GP DWNEALDIISFGSPEQSVEGMKVVCHELAQATND EGS
Sbjct: 1462 QELHMEGHMMPRALVSVNGPADWNEALDIISFGSPEQSVEGMKVVCHELAQATNDAEGSA 1521
Query: 1541 MDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTL 1600
MDELVKDAD+LVSCLANKV++TFDFSLTGASSR+CKYVLNTLMQTFQNK LAYAV+ESTL
Sbjct: 1522 MDELVKDADKLVSCLANKVSRTFDFSLTGASSRACKYVLNTLMQTFQNKILAYAVKESTL 1581
Query: 1601 DSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSR 1660
DSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDP+R
Sbjct: 1582 DSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPTR 1641
Query: 1661 WPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEI 1720
WPSPAS E+FA RNQ+FSDLVVKCLIKLTKVLQ+TIYDVDLDRILQSIH+YLQELGMEEI
Sbjct: 1642 WPSPASAETFAIRNQKFSDLVVKCLIKLTKVLQTTIYDVDLDRILQSIHIYLQELGMEEI 1701
Query: 1721 RRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAA 1780
RRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAA
Sbjct: 1702 RRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAA 1761
Query: 1781 RMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIGLYELYRI 1840
RMLTST P GQ HWGDSAANN + A +SA+AQLKQELAAIFKKIGDKQTCTIGLYELYRI
Sbjct: 1762 RMLTSTAPVGQNHWGDSAANNSSPAAHSAEAQLKQELAAIFKKIGDKQTCTIGLYELYRI 1821
Query: 1841 TQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSPE 1900
TQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKN AAGRTPSS+P++TPPP+AL VSSP+
Sbjct: 1822 TQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNTAAGRTPSSLPISTPPPSALNVSSPD 1881
Query: 1901 FAPLSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENPLSDQRNE 1960
PLSPVHTNS+NDAK ++VK E TNF+LPPSY EDNR A S+ L EN L DQRNE
Sbjct: 1882 LQPLSPVHTNSLNDAKPLHVKPETTNFHLPPSYAEDNRAVSAFLSRGLVSENSLGDQRNE 1941
Query: 1961 RF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQS-RSSDRAS 2017
+ GVTSGTLDAIRERMKSMQLAAA GNPD G+RPL++MN+N+NNGLSSQ R+ D
Sbjct: 1942 KLIGGVTSGTLDAIRERMKSMQLAAATGNPDSGSRPLMSMNENLNNGLSSQILRAPDSTG 2001
Query: 2018 VENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2052
+ENP VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 2002 MENPLHSGVLPMDEKALSGLQARMERLKSGSLEPL 2036
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115548|ref|XP_002317062.1| microtubule organization protein [Populus trichocarpa] gi|222860127|gb|EEE97674.1| microtubule organization protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3438 bits (8915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1702/2068 (82%), Positives = 1847/2068 (89%), Gaps = 59/2068 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIV 60
MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLA+LC SI DPKD+R+RE
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLASLCVSIFDPKDSRLREFA------ 54
Query: 61 SDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLK 120
PLF+KTVADSNAPVQ+KALDALIA+L+
Sbjct: 55 ---------------------------------PLFRKTVADSNAPVQEKALDALIAFLR 81
Query: 121 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKV 180
AADADAGRYAKEVCDAI AKCLTGRPKTVEKAQA FMLWVELEAV+ FLD MEKAIKNKV
Sbjct: 82 AADADAGRYAKEVCDAIVAKCLTGRPKTVEKAQAAFMLWVELEAVEAFLDAMEKAIKNKV 141
Query: 181 AKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 240
+KAVVPAIDVMFQALSEFGAK++PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK
Sbjct: 142 SKAVVPAIDVMFQALSEFGAKVVPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 201
Query: 241 DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEE 300
DPVK+IL EKMRDTMKKELE ELVNV+GTA+P+RKIR+EQDKE E +SE GPG SEE
Sbjct: 202 DPVKSILLEKMRDTMKKELEAELVNVTGTAKPSRKIRSEQDKEPEPEGVSEVAGPGQSEE 261
Query: 301 STADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 360
D P EIDEY+L+DPVDIL+PLEKSGFW+GVKATKWSERK+AVAELTKLASTKRIAPG
Sbjct: 262 VAPDAPQEIDEYDLMDPVDILSPLEKSGFWDGVKATKWSERKEAVAELTKLASTKRIAPG 321
Query: 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 420
DF+EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR+HFSGSSRFLLPVLLEKLKEKKPT
Sbjct: 322 DFSEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRSHFSGSSRFLLPVLLEKLKEKKPT 381
Query: 421 VAESLTQTLQAMHKAGCLNLVDV--VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478
+ ESLTQTLQAMHKAGC NL D+ VE VKT+VKNKVPLVRSLTLNWVTFCIETS+KA +
Sbjct: 382 LTESLTQTLQAMHKAGCSNLADIFAVEYVKTAVKNKVPLVRSLTLNWVTFCIETSNKAVI 441
Query: 479 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 538
LKVHKDYVPICME LNDGTP+VRD+AFSVLAA+AK VGMRPLERS+EKLDDVRR KLSEM
Sbjct: 442 LKVHKDYVPICMESLNDGTPDVRDSAFSVLAAVAKMVGMRPLERSLEKLDDVRRKKLSEM 501
Query: 539 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGP 598
IAGSG VA +S VQT+ GS+ SVE SESSFV+KSAASMLSGK+P AAPA+KK P
Sbjct: 502 IAGSGDGVAAVATSGTVQTARGSMSSVETSESSFVKKSAASMLSGKKPAPAAPANKKAAP 561
Query: 599 VKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 656
K A K DG+G+ ETS+ E PEDVEP+EMSLEEIE+RLGSLI ADT+ QLKSAVWKE
Sbjct: 562 TKSGASKKVDGAGRPETSRALEPPEDVEPAEMSLEEIETRLGSLIQADTISQLKSAVWKE 621
Query: 657 RLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF 716
RLEAISSL++QVE +QN +QSVEIL+RL+C +PGW+EKNVQVQQQ IEVI YLA+TA+KF
Sbjct: 622 RLEAISSLKEQVEGLQNCNQSVEILIRLLCAIPGWNEKNVQVQQQFIEVITYLASTASKF 681
Query: 717 PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSE 776
PKKCVVLCLLGISERVADIKTRA+AMKCLTTF+EAVGPGF+F+RLYKIMK+HKNPKVLSE
Sbjct: 682 PKKCVVLCLLGISERVADIKTRAYAMKCLTTFTEAVGPGFVFDRLYKIMKEHKNPKVLSE 741
Query: 777 GILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 836
GILWMV A++DFGVSHLKLKDLIDFCKDTGLQSS AA+RNATIKLLGALHKFVGPDIKGF
Sbjct: 742 GILWMVLAIDDFGVSHLKLKDLIDFCKDTGLQSSVAASRNATIKLLGALHKFVGPDIKGF 801
Query: 837 LADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTP 895
LADVKPALLSALDAEYEKNPFEG + +PKKTVR SES + VS GG D LPREDISGK TP
Sbjct: 802 LADVKPALLSALDAEYEKNPFEGASAIPKKTVRTSESMTCVSGGGLDSLPREDISGKVTP 861
Query: 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 955
TL+KSLESPDWKVRLESIEAVNKILEEANKRIQP GTGELFG LRGRLYDSNKNL+M L
Sbjct: 862 TLIKSLESPDWKVRLESIEAVNKILEEANKRIQPNGTGELFGALRGRLYDSNKNLIMTAL 921
Query: 956 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYV 1015
T+G VASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC L LD+W+AAVHLDKM+PY+
Sbjct: 922 TTIGGVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECALNTLDSWVAAVHLDKMIPYI 981
Query: 1016 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1075
T AL ++KLGAEGRKDLFDWLSKQL+GLS FPDA HLLKPA AMTDKS+DVRKAAEACI
Sbjct: 982 TAALFESKLGAEGRKDLFDWLSKQLSGLSEFPDAIHLLKPAGSAMTDKSADVRKAAEACI 1041
Query: 1076 VEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--------VSMGPTSKSSSKVP 1127
EILR GQE IE+NLKDI GPALAL+LER++ Q +SMGP+SK+SSKV
Sbjct: 1042 SEILRVCGQEMIERNLKDIHGPALALVLERVRPASVYQESFESTKTISMGPSSKTSSKVG 1101
Query: 1128 KSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVR 1187
K+ASNG+SKH NR+ISSRVIPTKG++PE MS+QD AVQSQALLNVKDSNKEDRERMVVR
Sbjct: 1102 KAASNGISKHSNRSISSRVIPTKGSKPEPAMSIQDRAVQSQALLNVKDSNKEDRERMVVR 1161
Query: 1188 RFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV 1247
RFKFE+PR+EQIQ+LE DMMKY REDL+RRLLS DFKKQVDGLEMLQKALPSI +IIEV
Sbjct: 1162 RFKFEEPRMEQIQDLEGDMMKYLREDLNRRLLSLDFKKQVDGLEMLQKALPSIGNEIIEV 1221
Query: 1248 LDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHN 1307
LDILL+WFVLQFCKSNTTCLLKVLEFLP LFD LRDE Y+L+ESEAA+FLPCL+EK GHN
Sbjct: 1222 LDILLKWFVLQFCKSNTTCLLKVLEFLPALFDLLRDEAYTLSESEAAIFLPCLIEKLGHN 1281
Query: 1308 IEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG 1367
IEKVREKMREL KQI++ YSATK+ PYILEGLRSKNNRTRIEC DLVGFLID HGAEISG
Sbjct: 1282 IEKVREKMRELAKQILHAYSATKSFPYILEGLRSKNNRTRIECADLVGFLIDQHGAEISG 1341
Query: 1368 QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWK 1427
QLKSLQIVASLTAERDGEIRKAALN LATGYKILGEDIWRY+GKLTDAQKSM+DDRFKWK
Sbjct: 1342 QLKSLQIVASLTAERDGEIRKAALNALATGYKILGEDIWRYLGKLTDAQKSMIDDRFKWK 1401
Query: 1428 VREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVER 1487
VREMEK+KEG+PG+ARAALRRSVRENGSDIAEQSG+VSQSVSGP L R+N+G EL VER
Sbjct: 1402 VREMEKRKEGRPGDARAALRRSVRENGSDIAEQSGEVSQSVSGPILARKNFGTQELQVER 1461
Query: 1488 SIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKD 1547
IMPRAL S SGPTDWNEALDIISF SPEQSVEGMKVVCHELAQAT+D EGSVMDELVKD
Sbjct: 1462 HIMPRALTSASGPTDWNEALDIISFSSPEQSVEGMKVVCHELAQATSDEEGSVMDELVKD 1521
Query: 1548 ADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITEL 1607
ADRLVSCLANKVA+TFDFSLTGASSRSCKYVLNTLMQTFQNK LA+AV+ESTLDSLITEL
Sbjct: 1522 ADRLVSCLANKVARTFDFSLTGASSRSCKYVLNTLMQTFQNKTLAHAVKESTLDSLITEL 1581
Query: 1608 LLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASN 1667
LLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSF VLINLLRPLDPSRWPSPAS
Sbjct: 1582 LLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFDVLINLLRPLDPSRWPSPAST 1641
Query: 1668 ESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGAD 1727
E+FA RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRIL+SIH+YLQELGMEEIRRRAGAD
Sbjct: 1642 ETFAIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILRSIHIYLQELGMEEIRRRAGAD 1701
Query: 1728 DKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTSTG 1787
DKPLRMVKTVLHELVKLRGA+IKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTST
Sbjct: 1702 DKPLRMVKTVLHELVKLRGASIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTSTA 1761
Query: 1788 PGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKV 1847
P GQ HWGDSAANN + AT+SA+AQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKV
Sbjct: 1762 PVGQNHWGDSAANNSSPATHSAEAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKV 1821
Query: 1848 DIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSPEFAPLSPV 1907
DIFAQLQNASEAFRTYIRDGLAQMEKN AAGRTPSS+PM+TPPP+A VSSP+ PLSPV
Sbjct: 1822 DIFAQLQNASEAFRTYIRDGLAQMEKNTAAGRTPSSLPMSTPPPSAPNVSSPDLQPLSPV 1881
Query: 1908 HTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENPLSDQRNERF--GVT 1965
HTNS+ND+K ++ K E TNF+LPPSY+ED GAI S+ EN L DQRNE+ GVT
Sbjct: 1882 HTNSLNDSKPLHAKPEATNFHLPPSYSED----GAILSRGFVSENSLGDQRNEKLISGVT 1937
Query: 1966 SGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQS-RSSDRASVENPAQG 2024
SGTLDAIRERMKSMQLAA AG PD G+RPL+++NDN+NNGLSS + D A +ENP G
Sbjct: 1938 SGTLDAIRERMKSMQLAATAGLPDSGSRPLMSVNDNLNNGLSSLILHAPDSAGMENPVLG 1997
Query: 2025 SVLPMDEKALSGLQARMERLKSGTIEPL 2052
VLP+DEKALSGLQARMERLKSG++EPL
Sbjct: 1998 GVLPLDEKALSGLQARMERLKSGSLEPL 2025
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533943|ref|XP_003535517.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3327 bits (8626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1668/2079 (80%), Positives = 1816/2079 (87%), Gaps = 71/2079 (3%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIV 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHF---- 56
Query: 61 SDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLK 120
F+KTVADSNAPVQ+KALDALIAYL+
Sbjct: 57 -----------------------------------FRKTVADSNAPVQEKALDALIAYLR 81
Query: 121 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKV 180
AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW+ELEAVD FLD MEKAIKNKV
Sbjct: 82 AADADASRYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLWIELEAVDAFLDAMEKAIKNKV 141
Query: 181 AKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 240
AKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK
Sbjct: 142 AKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 201
Query: 241 DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEE 300
D VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+EQDKE QE +SE VGPGP EE
Sbjct: 202 DSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSEQDKEPEQEAVSEVVGPGPCEE 261
Query: 301 STADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 360
S D P EIDEYELVDPVDILTPLEKSGFW+GVKATKWSERK+AVAELTKLASTKRI+PG
Sbjct: 262 SGNDAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLASTKRISPG 321
Query: 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 420
DF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHFS SSRFLLPVLLEKLKEKKP
Sbjct: 322 DFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHFSASSRFLLPVLLEKLKEKKPA 381
Query: 421 VAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNKVPLVRSLTLNWVTFCIETSSK 475
+AE+L QTLQAMHKAGC++L+D+VE VKT+ KNKVPLVRSLTL WVTFCIETS+K
Sbjct: 382 LAEALMQTLQAMHKAGCISLIDIVEGRFPPYVKTATKNKVPLVRSLTLTWVTFCIETSNK 441
Query: 476 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 535
+ KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKSVGMRPLERS+EKLDDVRR KL
Sbjct: 442 VVITKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKSVGMRPLERSLEKLDDVRRKKL 501
Query: 536 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 595
SEMI+GS V +S+A VQ + S S E SES V++SAA MLSGKRPV + PA KK
Sbjct: 502 SEMISGSEDAVPGASSAASVQNTRVSASSAETSESVLVKRSAAGMLSGKRPVQSVPAVKK 561
Query: 596 GGPVK--PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 653
G VK + K DG + + K E PEDVEP+EMSLEEIESR+GSLI +DT+ LKSAV
Sbjct: 562 VGVVKLGTNKKTDGVPQVKALKSVEPPEDVEPTEMSLEEIESRIGSLIESDTITLLKSAV 621
Query: 654 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA 713
WKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGW EKNVQVQQQVIEVI ++++TA
Sbjct: 622 WKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWGEKNVQVQQQVIEVITHISSTA 681
Query: 714 TKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKV 773
TKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAVGPGFIFERLYKIMK+HKNPKV
Sbjct: 682 TKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAVGPGFIFERLYKIMKEHKNPKV 741
Query: 774 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 833
LSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS AATRNA+IK LG LH+FVGPDI
Sbjct: 742 LSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNAATRNASIKFLGVLHRFVGPDI 801
Query: 834 KGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSVSSGGSDGLPREDISGK 892
KGFL DVKPALLSALD EYEKNPFEG + V K+TVRA +S+S+V +GG D LPREDISGK
Sbjct: 802 KGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRAKDSSSTVVAGGLDSLPREDISGK 861
Query: 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 952
+PTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ GTGELFG LRGRL DSNKN+VM
Sbjct: 862 ISPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATGTGELFGALRGRLLDSNKNIVM 921
Query: 953 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 1012
A+L +G VASAMG AVEK+SKG+LSDILKCLGDNKKHMREC L LDAWLAAVHLDKMV
Sbjct: 922 ASLTAIGNVASAMGQAVEKASKGILSDILKCLGDNKKHMRECVLNTLDAWLAAVHLDKMV 981
Query: 1013 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAE 1072
PY+ AL D+KLGAEGRKDLFDWLS+QL+GLS F +AA LLKPAS AMTDKSSDVRKA+E
Sbjct: 982 PYIAIALMDSKLGAEGRKDLFDWLSRQLSGLSSFAEAAQLLKPASSAMTDKSSDVRKASE 1041
Query: 1073 ACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ------------VSMGPTS 1120
ACI EILR G E IEK +KDI GPAL LI+E++K GA Q VS+G S
Sbjct: 1042 ACINEILRVSGHEMIEKMVKDIHGPALTLIVEKLKPYGAFQGTFFESFESGRAVSVGAIS 1101
Query: 1121 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1180
K+ K KS +NGVSKHGNRA+SSRV+ TKGA+ ESI SVQD AVQSQALLN+KDSNKED
Sbjct: 1102 KA--KAGKSTANGVSKHGNRAVSSRVVATKGAKSESI-SVQDIAVQSQALLNIKDSNKED 1158
Query: 1181 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSI 1240
RERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLLS DFKKQVDGLEMLQKALPSI
Sbjct: 1159 RERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLLSADFKKQVDGLEMLQKALPSI 1218
Query: 1241 RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1300
K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL DTL+DEGYSLTESE AVFLPCL
Sbjct: 1219 AKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLDTLKDEGYSLTESEGAVFLPCL 1278
Query: 1301 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1360
VEK GHNIEKVREKMRELTKQ V YSA K PYILEGLRSKNNRTRIEC DLVGF+IDH
Sbjct: 1279 VEKLGHNIEKVREKMRELTKQFVAIYSACKCFPYILEGLRSKNNRTRIECADLVGFIIDH 1338
Query: 1361 HGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSML 1420
HGAEISGQLKSLQIVASLTAERDGE RKAALNTLATGYKILGEDIWRYVGKLTDAQKSML
Sbjct: 1339 HGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYKILGEDIWRYVGKLTDAQKSML 1398
Query: 1421 DDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGH 1480
DDRFKWKVREMEKKKEGKPGEARA RRSVRENGSD+AEQSG++++S++GP ++R+NYG
Sbjct: 1399 DDRFKWKVREMEKKKEGKPGEARAISRRSVRENGSDVAEQSGEMTRSLAGP-ILRKNYGQ 1457
Query: 1481 SELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSV 1540
+ +++R +MPR + SGPTDWNEALDIISFGSPEQSV+GMKV+CHELAQAT+DPEGS
Sbjct: 1458 PDSNIDRQLMPRPMTVASGPTDWNEALDIISFGSPEQSVDGMKVICHELAQATSDPEGSA 1517
Query: 1541 MDELVKDADRLVSCLANKVAKTFDFSLTG-ASSRSCKYVLNTLMQTFQNKRLAYAVQEST 1599
MDELVKDADRLVSCLANKVA+TFDFSLTG ASSRSCKYVLNTLMQTFQNKRLA+AV+EST
Sbjct: 1518 MDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYVLNTLMQTFQNKRLAHAVKEST 1577
Query: 1600 LDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPS 1659
LDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLD S
Sbjct: 1578 LDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDSS 1637
Query: 1660 RWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEE 1719
RWPSPASNES A+RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIH+YLQ+LGMEE
Sbjct: 1638 RWPSPASNESLASRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHLYLQDLGMEE 1697
Query: 1720 IRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAA 1779
IRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID KPQPIILAYI+LNLETLAA
Sbjct: 1698 IRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDAKPQPIILAYIELNLETLAA 1757
Query: 1780 ARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIGLYELYR 1839
ARMLT++GPGGQ HWGDSA NN S T+SADAQLKQELAAIFKKIG+KQTCTIGLYELYR
Sbjct: 1758 ARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELAAIFKKIGEKQTCTIGLYELYR 1817
Query: 1840 ITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSP 1899
ITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS+PM TPPPA+L +SSP
Sbjct: 1818 ITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSLPMPTPPPASLNISSP 1877
Query: 1900 EFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPP-SYTEDNRIGGAIASKVLPPENPLSDQR 1958
+FAPLSPV+ N + DAK +NVK EPTNFNLPP SY E+NR AI S+ L + L DQR
Sbjct: 1878 DFAPLSPVNANPLGDAK-LNVKPEPTNFNLPPSSYNEENRAVNAITSRALNSDYTLGDQR 1936
Query: 1959 NERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQSR---SS 2013
N+RF GVTSGTLDAIRERMKSMQLAAAAG+ + G R L + NDN N GL S+ +S
Sbjct: 1937 NDRFMTGVTSGTLDAIRERMKSMQLAAAAGSTESGGRHLTSANDNFNQGLPPPSQIPHAS 1996
Query: 2014 DRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2052
+ EN G VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1997 EHVGTENTMHGGVLPMDEKALSGLQARMERLKSGSLEPL 2035
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356574625|ref|XP_003555446.1| PREDICTED: protein MOR1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3309 bits (8580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1669/2079 (80%), Positives = 1822/2079 (87%), Gaps = 71/2079 (3%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIV 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLA+LCDSITDPKD+RIRE G F
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHF---- 56
Query: 61 SDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLK 120
F+KTV DSNAPVQ+KALDALIAYL+
Sbjct: 57 -----------------------------------FRKTVTDSNAPVQEKALDALIAYLR 81
Query: 121 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKV 180
AADADA RY KEVCDA+ AKCLTGRPKTVEKAQAVF+LW+ELEAVD FLD MEKAIKNKV
Sbjct: 82 AADADAARYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLWIELEAVDAFLDAMEKAIKNKV 141
Query: 181 AKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 240
AKAVVPAIDVMFQALS+FGAKI+PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK
Sbjct: 142 AKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 201
Query: 241 DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEE 300
D VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+EQDKE QE +SE VGPGPSEE
Sbjct: 202 DSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSEQDKEPEQEAVSEVVGPGPSEE 261
Query: 301 STADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 360
S D P EIDEYELVDPVDIL PLEKSGFW+GVKATKWSERK+AVAELTKLASTKRI+PG
Sbjct: 262 SGNDAPQEIDEYELVDPVDILIPLEKSGFWDGVKATKWSERKEAVAELTKLASTKRISPG 321
Query: 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 420
DF+EVCRTLKKLITDVNIAVAVEA+QAIGNLARGLRTHFS SSRFLLPVLLEKLKEKKP
Sbjct: 322 DFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHFSSSSRFLLPVLLEKLKEKKPA 381
Query: 421 VAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNKVPLVRSLTLNWVTFCIETSSK 475
+AE+LTQTLQAMHKAGC++L+D+VE VKT+ KNKVPLVRSLTL WVTFCIETS+K
Sbjct: 382 LAEALTQTLQAMHKAGCISLIDIVEGRFPSYVKTATKNKVPLVRSLTLTWVTFCIETSNK 441
Query: 476 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 535
++KVHKDYVPICMECLNDGTPEVRDAAFS LA IAKSVGMRPLERS+EKLDDVRR KL
Sbjct: 442 GVIMKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKSVGMRPLERSLEKLDDVRRKKL 501
Query: 536 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 595
SEMI+GS V +S+A VQ + S S E+SES+FV++SAA MLSGKRPV + P +KK
Sbjct: 502 SEMISGSEDAVPGASSAASVQNTRVSASSAESSESAFVKRSAAGMLSGKRPVQSVPVAKK 561
Query: 596 GGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV 653
GG VK K DG + + SK E PEDVEP+EMSLEEIESR+GSLI +DT+ QLKSAV
Sbjct: 562 GGVVKSGTNKKTDGVPQVKASKSVEPPEDVEPTEMSLEEIESRIGSLIQSDTITQLKSAV 621
Query: 654 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA 713
WKERLEAISSL+QQVE +Q+LDQSVEIL+RLVC LPGWSEKNVQVQQQVIEVI ++ +TA
Sbjct: 622 WKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWSEKNVQVQQQVIEVITHIGSTA 681
Query: 714 TKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKV 773
TKFPKKCVVLCL G+SERVADIKTRAHAMKCL+T SEAVGPGFIFERLYKI+K+HKNPKV
Sbjct: 682 TKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAVGPGFIFERLYKILKEHKNPKV 741
Query: 774 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 833
LSEGILWMVSAVEDFGVSH+KLKDLIDF K+ GLQSS AATRNA+IK LG LH+FVGPDI
Sbjct: 742 LSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNAATRNASIKFLGVLHRFVGPDI 801
Query: 834 KGFLADVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSVSSGGSDGLPREDISGK 892
KGFL DVKPALLSALD EYEKNPFEG + V K+TVRAS+S+S+ +GG D LPREDISGK
Sbjct: 802 KGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRASDSSSTAVAGGLDSLPREDISGK 861
Query: 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 952
TPTL+KSLESPDWKVR+ES++AVNKILEEANKRIQ GTGELFG LRGRL DSNKN+VM
Sbjct: 862 ITPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATGTGELFGALRGRLVDSNKNIVM 921
Query: 953 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMV 1012
A+L T+G VASAMG AVEK+SKG+LSD+LKCLGDNKKHMREC L LDAWLAAVHLDKMV
Sbjct: 922 ASLTTIGNVASAMGQAVEKASKGILSDVLKCLGDNKKHMRECVLNTLDAWLAAVHLDKMV 981
Query: 1013 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAE 1072
Y+ AL D+KLGAEGRKDLFDWLSKQL+ LS F +AA LLKPAS AMTDKSSDVRKA+E
Sbjct: 982 SYIAIALMDSKLGAEGRKDLFDWLSKQLSELSSFAEAAQLLKPASSAMTDKSSDVRKASE 1041
Query: 1073 ACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ------------VSMGPTS 1120
ACI EILR G E IEK +KDI GPAL L+LE++K GA Q VS+G TS
Sbjct: 1042 ACINEILRVSGHEMIEKMVKDIHGPALTLVLEKLKPYGAFQGTFFESFESGRAVSVGATS 1101
Query: 1121 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1180
K+ K KS +NGVSKHGNRA+SSRV+ TKG + ESI SVQD AVQSQALLN+KDSNKED
Sbjct: 1102 KA--KAGKSTANGVSKHGNRAVSSRVVATKGTKSESI-SVQDIAVQSQALLNIKDSNKED 1158
Query: 1181 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSI 1240
RERMVVRRFKFEDPRIEQIQ+LENDMMKYFREDLHRRLLS DFKKQVDGLEMLQKALPSI
Sbjct: 1159 RERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLLSADFKKQVDGLEMLQKALPSI 1218
Query: 1241 RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1300
K++IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL DTL+DEGYSLTESE AVFLPCL
Sbjct: 1219 AKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLDTLKDEGYSLTESEVAVFLPCL 1278
Query: 1301 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1360
VEK GHNIEKVREKMRELTKQ V YSA+K PYILEGLRSKNNRTRIEC DLVGF+IDH
Sbjct: 1279 VEKLGHNIEKVREKMRELTKQFVAIYSASKCFPYILEGLRSKNNRTRIECADLVGFIIDH 1338
Query: 1361 HGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSML 1420
HGAEISGQLKSLQIVASLTAERDGE RKAALN LATGYKILGEDIWRYVGKLTDAQKSML
Sbjct: 1339 HGAEISGQLKSLQIVASLTAERDGETRKAALNALATGYKILGEDIWRYVGKLTDAQKSML 1398
Query: 1421 DDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGH 1480
DDRFKWKVREMEKKKEGKPGEARA LRRSVRENGSD+AEQSG++++S++GP ++R+NY
Sbjct: 1399 DDRFKWKVREMEKKKEGKPGEARANLRRSVRENGSDVAEQSGEMARSLTGP-MLRKNYAQ 1457
Query: 1481 SELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSV 1540
+ +++R +MP + SGPTDWNEALDIISFGSPEQSV+GMKVVCHELAQAT+DPEGS
Sbjct: 1458 PDSNIDRQLMPHPMTVASGPTDWNEALDIISFGSPEQSVDGMKVVCHELAQATSDPEGSA 1517
Query: 1541 MDELVKDADRLVSCLANKVAKTFDFSLTG-ASSRSCKYVLNTLMQTFQNKRLAYAVQEST 1599
MDELVKDADRLVSCLANKVA+TFDFSLTG ASSRSCKYVLNTLMQTFQNKRLA+AV+EST
Sbjct: 1518 MDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYVLNTLMQTFQNKRLAHAVKEST 1577
Query: 1600 LDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPS 1659
LDSLITELLLWLLD+RVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLD S
Sbjct: 1578 LDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDSS 1637
Query: 1660 RWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEE 1719
RWPSPA NES A+RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIH+YLQ+LGMEE
Sbjct: 1638 RWPSPALNESLASRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHLYLQDLGMEE 1697
Query: 1720 IRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAA 1779
IRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPID KPQPIILAYI+LNLETLAA
Sbjct: 1698 IRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDAKPQPIILAYIELNLETLAA 1757
Query: 1780 ARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIGLYELYR 1839
ARMLT++GPGGQ HWGDSA NN S T+SADAQLKQELAAIFKKIG+KQTCTIGLYELYR
Sbjct: 1758 ARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELAAIFKKIGEKQTCTIGLYELYR 1817
Query: 1840 ITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSP 1899
ITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSS+PM TPPPA+L +SSP
Sbjct: 1818 ITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSLPMPTPPPASLNISSP 1877
Query: 1900 EFAPLSPVHTNSMNDAKSMNVKSEPTNFNLPP-SYTEDNRIGGAIASKVLPPENPLSDQR 1958
+FAPLSPV+TN + DAK +NVK +PTNFNLPP SY E+NR AI S+ L + L DQR
Sbjct: 1878 DFAPLSPVNTNPLGDAK-LNVKPDPTNFNLPPSSYNEENRAVNAITSRALNSDYTLGDQR 1936
Query: 1959 NERF--GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQSR---SS 2013
N+RF GVTSGTLDAIRERMKSMQLAAAAG+ + G R L + NDN+N+GL S+ +S
Sbjct: 1937 NDRFMTGVTSGTLDAIRERMKSMQLAAAAGSTESGGRHLTSANDNLNHGLPPPSQIPHAS 1996
Query: 2014 DRASVENPAQGSVLPMDEKALSGLQARMERLKSGTIEPL 2052
+ EN G VLPMDEKALSGLQARMERLKSG++EPL
Sbjct: 1997 EHVGTENTMHGGVLPMDEKALSGLQARMERLKSGSLEPL 2035
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|19912731|dbj|BAB88648.1| microtubule bundling polypeptide TMBP200 [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 3236 bits (8389), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1601/2070 (77%), Positives = 1806/2070 (87%), Gaps = 62/2070 (2%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIV 60
MSE+EKLLKEAKKLPW++R HKNWKVRN+ANIDLAA+CDSITDPKD R+RE G
Sbjct: 1 MSEDEKLLKEAKKLPWDERFAHKNWKVRNDANIDLAAVCDSITDPKDPRLREFG------ 54
Query: 61 SDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLK 120
PLF+KTVADSNAPVQ+KALDALI YLK
Sbjct: 55 ---------------------------------PLFRKTVADSNAPVQEKALDALICYLK 81
Query: 121 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKV 180
AADADAGRYAKEVCDA+ KCLTGRPKTVEKAQ VF+LW+ELEAV+ FLD MEKAIKNKV
Sbjct: 82 AADADAGRYAKEVCDAVVVKCLTGRPKTVEKAQMVFLLWIELEAVEAFLDAMEKAIKNKV 141
Query: 181 AKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 240
AKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI K
Sbjct: 142 AKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWISK 201
Query: 241 DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEE 300
+ VK+ILFEKMRDTMKKELE ELVNV+GTA+PTRKIR+EQDKE E++S+ V GPSEE
Sbjct: 202 ETVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSEQDKEPELEVVSDAVAAGPSEE 261
Query: 301 STADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 360
S ADVP IDEY+LVDPVDIL PLEK+GFWEGVKA KWSERK+AVAELTKLASTK+IAPG
Sbjct: 262 SAADVPQRIDEYDLVDPVDILIPLEKTGFWEGVKAAKWSERKEAVAELTKLASTKKIAPG 321
Query: 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 420
DF E+CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT
Sbjct: 322 DFAEICRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 381
Query: 421 VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 480
+ ++LTQTLQAMHK+GCL L D+VEDVKT+ KNKVPLVRSLTLNWVTFCIETS+KA +LK
Sbjct: 382 LTDALTQTLQAMHKSGCLILTDIVEDVKTATKNKVPLVRSLTLNWVTFCIETSNKAVILK 441
Query: 481 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 540
HK+YVPICME LNDGTPEVRDAAFS LAA+AKSVGMRPLE+S+EKLDDVR+ KLSEMI
Sbjct: 442 AHKEYVPICMESLNDGTPEVRDAAFSALAAVAKSVGMRPLEKSLEKLDDVRKKKLSEMIG 501
Query: 541 GSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 600
GSGGD + +SS V +SGG + S +AS S V++SAASMLSGK+PV AAP SKKG K
Sbjct: 502 GSGGDPVSTSSSGAVPSSGGIMSSTQASTGSLVKRSAASMLSGKKPVQAAPPSKKGASAK 561
Query: 601 PSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 658
K DG+ + + SK E EDVEP+EMSLEEIES+LGSLI +T+ QLKSAVWKERL
Sbjct: 562 SGTNKRGDGATQLKASKPVEV-EDVEPAEMSLEEIESKLGSLIQPETITQLKSAVWKERL 620
Query: 659 EAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 718
EAISS ++QVEA++ LD SVEILVRL+C +PGWSEKNVQVQQ VI++IN++A+TA+K+PK
Sbjct: 621 EAISSFKEQVEALKELDPSVEILVRLLCAVPGWSEKNVQVQQLVIDIINHIASTASKYPK 680
Query: 719 KCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGI 778
KCVVLCL G+SERVADIKTRA AMKCLTTF EAVGPGF+FERLYKIMK+HKNPKVLSEGI
Sbjct: 681 KCVVLCLQGVSERVADIKTRAQAMKCLTTFCEAVGPGFVFERLYKIMKEHKNPKVLSEGI 740
Query: 779 LWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 838
LWMV+AV+DFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKL+GALHKFVGPDIKGFL+
Sbjct: 741 LWMVTAVDDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLIGALHKFVGPDIKGFLS 800
Query: 839 DVKPALLSALDAEYEKNPFEG-TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 897
DVKPAL+SALDAEY+KNPFEG +V PKKTV+ S++ S+SSGG D LPREDISGK TP L
Sbjct: 801 DVKPALISALDAEYDKNPFEGASVAPKKTVKTSDA-PSLSSGGLDSLPREDISGKITPAL 859
Query: 898 VKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLIT 957
+K LES DWK RLESIE VNKILEEANKRIQP GTGELFG LRGRL SNKNLV+ATL T
Sbjct: 860 LKGLESSDWKARLESIETVNKILEEANKRIQPTGTGELFGALRGRLCYSNKNLVIATLST 919
Query: 958 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTT 1017
+G VASAMGPAVEKSSKG+LSDILKCLGDNKKHMRECTL LD+WLAAVHLDKMVPY+T
Sbjct: 920 VGGVASAMGPAVEKSSKGILSDILKCLGDNKKHMRECTLNTLDSWLAAVHLDKMVPYITG 979
Query: 1018 ALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVE 1077
ALTDAKLGAEGRKDLFDWLSKQLTG+ FPDA HLLKP + AMTDKS+DVRKAAEAC E
Sbjct: 980 ALTDAKLGAEGRKDLFDWLSKQLTGMKEFPDAVHLLKPVASAMTDKSADVRKAAEACFGE 1039
Query: 1078 ILRAGGQETIEKNLKDIQGPALALILERIKLNGASQ--------VSMGPTSKSSSKVPKS 1129
+LR GQE + KNLKDIQGPALA+++ER++ G Q S G TSK SK+ KS
Sbjct: 1040 LLRVCGQEMVSKNLKDIQGPALAIVVERLRPYGVLQETFDLGRTSSTGTTSKVGSKIGKS 1099
Query: 1130 A--SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVR 1187
+ S+HGNRA +SR IPT+ +R E++MSVQD +VQSQAL+NVKDS+K +RER+VVR
Sbjct: 1100 TGPAERASRHGNRAGASRAIPTRNSRQETLMSVQDISVQSQALINVKDSHKGERERIVVR 1159
Query: 1188 RFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV 1247
RFKFE+PR+EQIQ+LE+D+MKYFREDLHRRLLSTDFKKQVDG+EMLQKALPSI K++IEV
Sbjct: 1160 RFKFEEPRLEQIQDLESDLMKYFREDLHRRLLSTDFKKQVDGIEMLQKALPSIAKELIEV 1219
Query: 1248 LDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHN 1307
LDI+LRWFVL+FC+SNT+CLLKVLEFLPELF+ LR+EGY +TE+EAA+FLPCLVEKSGHN
Sbjct: 1220 LDIVLRWFVLRFCESNTSCLLKVLEFLPELFEMLRNEGYMMTEAEAAIFLPCLVEKSGHN 1279
Query: 1308 IEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG 1367
IEKVREKMRELTKQI++ YSA KT PYILEGLRS++NRTRIEC DLVG+L+D+H AEI G
Sbjct: 1280 IEKVREKMRELTKQIIHAYSAAKTFPYILEGLRSRSNRTRIECADLVGYLLDNHEAEIGG 1339
Query: 1368 QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWK 1427
QLKSL+ VA+LTAERDGE RKAALNTLATGYKILG+DIW+Y+GKLT+AQ+SMLDDRFKWK
Sbjct: 1340 QLKSLKDVANLTAERDGETRKAALNTLATGYKILGDDIWKYLGKLTEAQRSMLDDRFKWK 1399
Query: 1428 VREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVER 1487
REM+K++EG+PGEARAALRRSVR+NG+DIAE SG+VS+S++GP L R Y ++E +ER
Sbjct: 1400 AREMDKRREGRPGEARAALRRSVRDNGTDIAEPSGEVSRSLAGPILNRDIYNNTEFPMER 1459
Query: 1488 SIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKD 1547
+ R ++ GP+DWNEALDII+ SPEQSVEGMKVVCH LA ATNDPEGS MD++VKD
Sbjct: 1460 IVNLRPVSGTMGPSDWNEALDIIASDSPEQSVEGMKVVCHLLAVATNDPEGSAMDDIVKD 1519
Query: 1548 ADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITEL 1607
AD+LVSCLANKVA+TFDFSL GASSRSCKYVLNTLMQTFQN+ LA+AV+ESTLD LITEL
Sbjct: 1520 ADKLVSCLANKVARTFDFSLMGASSRSCKYVLNTLMQTFQNRTLAHAVRESTLDILITEL 1579
Query: 1608 LLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASN 1667
LLWLLDERVP MDDGSQLLKALNVLMLKILDNADRTSSFVVLI LLRPLDPSRWPSPA++
Sbjct: 1580 LLWLLDERVPRMDDGSQLLKALNVLMLKILDNADRTSSFVVLIKLLRPLDPSRWPSPATD 1639
Query: 1668 ESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGAD 1727
ES RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIH+YLQELGM+EIRRRAGAD
Sbjct: 1640 ESLVIRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHIYLQELGMDEIRRRAGAD 1699
Query: 1728 DKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTSTG 1787
DKPLRMVKTVLHELVKLRG AIKGHLSMVPIDM+P PIILAYIDLNL+TLAAARMLT +
Sbjct: 1700 DKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDMQPPPIILAYIDLNLQTLAAARMLTPSV 1759
Query: 1788 PGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKV 1847
P GQTHWGDSAANNP AT++ADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKV
Sbjct: 1760 P-GQTHWGDSAANNPAPATHNADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKV 1818
Query: 1848 DIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSPEFAPLSPV 1907
DIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPM+TPPP++L +SSP+F LSPV
Sbjct: 1819 DIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMSTPPPSSLNLSSPKFGKLSPV 1878
Query: 1908 HTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPE-----NPLSDQRNERF 1962
+TN +NDAKS+N K EP+ F+LPPSY ED+R G A+ S+ L E + L +QRN+R
Sbjct: 1879 NTNPLNDAKSVNNKVEPSQFSLPPSYGEDDRGGNALLSRGLSSEHLELRHQLGEQRNDRL 1938
Query: 1963 --GVTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQSRSSDRASVEN 2020
GVTSGTL+AIRERMKSM LAA GNPDP +R L++MN NV++ +S+Q+ + +S+EN
Sbjct: 1939 PSGVTSGTLEAIRERMKSMSLAATGGNPDPSSRTLMSMNGNVSHMVSTQAPGIEHSSIEN 1998
Query: 2021 PAQGSVLPMDEKALSGLQARMERLKSGTIE 2050
Q VLPMDEKALSGLQARMERLKSG++E
Sbjct: 1999 SIQSGVLPMDEKALSGLQARMERLKSGSME 2028
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434204|ref|XP_004134886.1| PREDICTED: protein MOR1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3206 bits (8311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1605/2070 (77%), Positives = 1786/2070 (86%), Gaps = 83/2070 (4%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIV 60
MSEEEKLLKEAKKLPWEDRL HKNWKVRNEANIDLAA+CDSITDPKD+R+RE G
Sbjct: 1 MSEEEKLLKEAKKLPWEDRLSHKNWKVRNEANIDLAAVCDSITDPKDSRLREFG------ 54
Query: 61 SDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLK 120
PLF+KTVADSNAPVQ+KALDALIAYL+
Sbjct: 55 ---------------------------------PLFRKTVADSNAPVQEKALDALIAYLR 81
Query: 121 AADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKV 180
AADADAGR+AKE CDAI AKCLTGRPKTVEKAQAVFMLWVELEA DVFLD MEKAIKNKV
Sbjct: 82 AADADAGRFAKETCDAIVAKCLTGRPKTVEKAQAVFMLWVELEAADVFLDAMEKAIKNKV 141
Query: 181 AKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 240
AKAVVPAIDVMFQALS+FGAK++PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK
Sbjct: 142 AKAVVPAIDVMFQALSDFGAKVVPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 201
Query: 241 DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEE 300
DPVK+ILFEKMRDTMKKELE ELVNV+G+ARP+RKIR+EQDKE +E SE VG GPSEE
Sbjct: 202 DPVKSILFEKMRDTMKKELEAELVNVTGSARPSRKIRSEQDKEPEKEDTSEAVGTGPSEE 261
Query: 301 STADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG 360
S ADVP EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSERK+AVAEL+KLAST++IAPG
Sbjct: 262 SVADVPQEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSERKEAVAELSKLASTRKIAPG 321
Query: 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 420
DF+EVCRTLKKLITDVNIAVAVEAIQAIGNL+RGLR +FS SSRFLLPVLLEKLKEKKP
Sbjct: 322 DFSEVCRTLKKLITDVNIAVAVEAIQAIGNLSRGLRANFSASSRFLLPVLLEKLKEKKPA 381
Query: 421 VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 480
+ ESLTQTLQAMHKAGCL+L DV+EDVKT+ KNKVPLVRS TL+WVTFCIETS+KA +LK
Sbjct: 382 LMESLTQTLQAMHKAGCLSLSDVIEDVKTASKNKVPLVRSSTLSWVTFCIETSNKAVILK 441
Query: 481 VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 540
VHK+YVPI ME LNDGTPEVRDAAF LAA+AK IE L + ++
Sbjct: 442 VHKEYVPIFMESLNDGTPEVRDAAFLALAAVAK----------IESLSLSLSSGFGMLVP 491
Query: 541 GSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 600
+ + V S+ FV+KSAASMLSGKRP AAP+SKKG K
Sbjct: 492 IYFAFIVN-----------NQLDLVLDSDGLFVKKSAASMLSGKRPAQAAPSSKKGNLAK 540
Query: 601 PSAKKDGSGK------QETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW 654
K G ++SK E PEDVEP+EMSLEE+ES+LGSLI ADTV QLKS VW
Sbjct: 541 SGTNKKADGSVPSGAPPKSSKPIEVPEDVEPAEMSLEEVESKLGSLIEADTVSQLKSTVW 600
Query: 655 KERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 714
KERLEAISSL+QQVE +++L+ SVEILVRL+C++PGWSEKNVQVQQQVIEVI Y+A+TA
Sbjct: 601 KERLEAISSLKQQVEGLEDLNPSVEILVRLLCIIPGWSEKNVQVQQQVIEVITYIASTAK 660
Query: 715 KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 774
KFPKKC+VLCL GISERVADIKTR AMKCLTTFSEAVGPGFIFERL+KIMK+HKNPKVL
Sbjct: 661 KFPKKCIVLCLSGISERVADIKTRVQAMKCLTTFSEAVGPGFIFERLFKIMKEHKNPKVL 720
Query: 775 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 834
SEG+LWMVSAVEDFG+S LKLKDLIDFCK+TGLQSSAAATRN TIKLLG +HKFVGPD+K
Sbjct: 721 SEGLLWMVSAVEDFGISLLKLKDLIDFCKETGLQSSAAATRNVTIKLLGCVHKFVGPDLK 780
Query: 835 GFLADVKPALLSALDAEYEKNPFEGT-VVPKKTVRASESTSSVSSGGSDGLPREDISGKF 893
GFL+DVKPALL+A+D E+EKNPFEGT PK+TVRA E TSS S G+DGLPREDISGK
Sbjct: 781 GFLSDVKPALLTAIDTEFEKNPFEGTAAAPKRTVRAEELTSSTSVSGTDGLPREDISGKI 840
Query: 894 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 953
TPTL+K+ ESPDWKVRLESIEAVNK+LEEANKRIQP GT +L G LRGRLYDSNKNLVMA
Sbjct: 841 TPTLLKNFESPDWKVRLESIEAVNKMLEEANKRIQPTGTSDLLGALRGRLYDSNKNLVMA 900
Query: 954 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP 1013
TL T+G VASAMGP+VEKS KGVLSD+LKCLGDNKKHMRE TLT LDAWLAAVH DKM+P
Sbjct: 901 TLATIGNVASAMGPSVEKSGKGVLSDVLKCLGDNKKHMREATLTALDAWLAAVHFDKMIP 960
Query: 1014 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEA 1073
Y+ AL D K+ AEGRKDL +WLS++L+G++ DA LLKPA A+TDKSSDVRKAAE+
Sbjct: 961 YMILALVDNKVSAEGRKDLLEWLSRKLSGINDSSDAIQLLKPACSALTDKSSDVRKAAES 1020
Query: 1074 CIVEILRAGGQETIEKNLKDIQGPALALILERIK--------LNGASQVSMGPTSKSSSK 1125
CI EILR G QE +EK +KDI GP L+L+LER++ + A QV+ SK++ K
Sbjct: 1021 CITEILRVGRQEAVEKVVKDISGPGLSLVLERLRPYGALQESFDSAKQVTSSLPSKNAIK 1080
Query: 1126 VPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMV 1185
V K+ SNGV+KHGN+AISSR +KG R ES++S D AVQSQALLNVKDSNKE+RER++
Sbjct: 1081 VGKATSNGVAKHGNKAISSRGTISKGNRTESLISAHDLAVQSQALLNVKDSNKEERERII 1140
Query: 1186 VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII 1245
VR+FKFE+PRIEQIQ+LENDMMKYFREDL RR+LSTDFKKQVDG+EMLQKAL SI KD+I
Sbjct: 1141 VRKFKFEEPRIEQIQDLENDMMKYFREDLQRRMLSTDFKKQVDGIEMLQKALASIGKDVI 1200
Query: 1246 EVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSG 1305
EVLDILLRWFVLQFCKSNTTCLLKVLEFLPELF+ L+DEGY + ESEAA+FLPCL+EK G
Sbjct: 1201 EVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFEILKDEGYCINESEAAIFLPCLIEKLG 1260
Query: 1306 HNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEI 1365
HNIEKV+EKMRELTKQI+ YSATK PYILEGLRSKNNRTRIEC DL+GFLID++G+EI
Sbjct: 1261 HNIEKVKEKMRELTKQIIQAYSATKMFPYILEGLRSKNNRTRIECADLIGFLIDNYGSEI 1320
Query: 1366 SGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFK 1425
SGQL+SLQ+VASLTAERDGEIRKAALNTLATGYKILGE++WRYVGKLTDAQ+SMLDDRFK
Sbjct: 1321 SGQLRSLQLVASLTAERDGEIRKAALNTLATGYKILGEEVWRYVGKLTDAQRSMLDDRFK 1380
Query: 1426 WKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHV 1485
WKVREMEKKKEGKPGEARAA+RR +RE S++AEQSG+VS+S+SG R+NYG SELH+
Sbjct: 1381 WKVREMEKKKEGKPGEARAAMRRPLREYESEVAEQSGEVSRSMSGTISTRKNYG-SELHM 1439
Query: 1486 ERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELV 1545
ER +P+ L + +GPTDWNEA+DIISFGSPEQSVEGMKVVCHELAQA++DPEGS MDEL
Sbjct: 1440 ERQSVPQPLTTANGPTDWNEAMDIISFGSPEQSVEGMKVVCHELAQASSDPEGSSMDELA 1499
Query: 1546 KDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLIT 1605
+DADRLV CLA KVAKTFD+SLTGASSRSCKYVLNTLMQTFQNKRLAYAV+E TLDSLIT
Sbjct: 1500 RDADRLVLCLATKVAKTFDYSLTGASSRSCKYVLNTLMQTFQNKRLAYAVKEKTLDSLIT 1559
Query: 1606 ELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPA 1665
ELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPL+PSRWPS
Sbjct: 1560 ELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLEPSRWPSTG 1619
Query: 1666 SNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAG 1725
S ESFA+RNQ+FSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIH+YLQ LGMEEIRRRAG
Sbjct: 1620 SKESFASRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHLYLQNLGMEEIRRRAG 1679
Query: 1726 ADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTS 1785
ADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTS
Sbjct: 1680 ADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTS 1739
Query: 1786 TGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYP 1845
TGP GQTHWGDS ANN +S T SADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYP
Sbjct: 1740 TGPAGQTHWGDSTANNASSGTQSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYP 1799
Query: 1846 KVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSPEFAPLS 1905
KVDIFAQLQNASEAFRTYIRDGLAQME+NAAAGRTPSS+P++TPPPA++ SSP+FAPLS
Sbjct: 1800 KVDIFAQLQNASEAFRTYIRDGLAQMERNAAAGRTPSSLPLSTPPPASMN-SSPDFAPLS 1858
Query: 1906 PVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENPLSDQRNERF--G 1963
PVHTNS+ +AKS+NVK EPTNF LPPSYTEDNRI I S+ P+ L DQRN+++ G
Sbjct: 1859 PVHTNSLTEAKSLNVKPEPTNFTLPPSYTEDNRI---ITSRGPGPDYSLGDQRNDKYISG 1915
Query: 1964 VTSGTLDAIRERMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQ-SRSSDRASVENPA 2022
VTSGTLDAIRERMKSMQLAAAAGN + G++PL+++NDN++ G+ +Q S+ S+ VEN A
Sbjct: 1916 VTSGTLDAIRERMKSMQLAAAAGNHESGSKPLMSVNDNLHPGMIAQMSQPSEHIGVENSA 1975
Query: 2023 QGSVLPMDEKALSGLQARMERLKSGTIEPL 2052
Q VLPMDEKALSGLQARMERLKSGTIEPL
Sbjct: 1976 QAGVLPMDEKALSGLQARMERLKSGTIEPL 2005
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297823359|ref|XP_002879562.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] gi|297325401|gb|EFH55821.1| hypothetical protein ARALYDRAFT_482523 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 3063 bits (7942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1548/2057 (75%), Positives = 1738/2057 (84%), Gaps = 89/2057 (4%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVS 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA+L DSITDPKD R+R+ G
Sbjct: 3 AEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASLFDSITDPKDPRLRDFGH------ 56
Query: 62 DLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKA 121
LF+KTVADSNAPVQ+KALDALIA+L+A
Sbjct: 57 ---------------------------------LFRKTVADSNAPVQEKALDALIAFLRA 83
Query: 122 ADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVA 181
AD+DAGRYAKEVCDAIAAKCLTGR TV+KAQA F+LWVELEAVDVFLD MEKAIKNKVA
Sbjct: 84 ADSDAGRYAKEVCDAIAAKCLTGRKNTVDKAQAAFLLWVELEAVDVFLDTMEKAIKNKVA 143
Query: 182 KAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD 241
KAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQDQNVRAS+KG+TLELCRWIGKD
Sbjct: 144 KAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQDQNVRASAKGVTLELCRWIGKD 203
Query: 242 PVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEES 301
PVK+ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQDKE E S+ VG GPSEE+
Sbjct: 204 PVKSILFEKMRDTMKKELEAELTNVSGGAKPTRKIRSEQDKEPEAEASSDVVGDGPSEEA 263
Query: 302 TADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 361
AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSERK+AVAELTKLASTK+IAPGD
Sbjct: 264 VADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLASTKKIAPGD 323
Query: 362 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTV 421
F+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS SSRF+LPVLLEKLKEKKP+V
Sbjct: 324 FSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFSASSRFMLPVLLEKLKEKKPSV 383
Query: 422 AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 481
E LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS TL W+TFC+ETS+KA +LK
Sbjct: 384 TEPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRSSTLTWLTFCLETSNKALILKA 443
Query: 482 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 541
HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPLERS+EKLDDVR+ KLSEMIAG
Sbjct: 444 HKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPLERSLEKLDDVRKKKLSEMIAG 503
Query: 542 SGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 601
SGG GTSS VQ+S GS + SE+SFVRKSAASMLSGKRP +APASKK G KP
Sbjct: 504 SGGGDQAGTSSVTVQSSVGST-ATGNSEASFVRKSAASMLSGKRPAPSAPASKKVGTGKP 562
Query: 602 SAKKDG-SGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 660
K S + E K E PEDVEP+EM LEEIE+RLGSL+ +T+ QLKS+VWKERLEA
Sbjct: 563 GGGKKDGSVRNEGPKSVEPPEDVEPAEMGLEEIENRLGSLVKPETISQLKSSVWKERLEA 622
Query: 661 ISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 720
+L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQQQVIE+I Y+++TA KFPKKC
Sbjct: 623 TLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQQQVIEIITYISSTAAKFPKKC 682
Query: 721 VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILW 780
VVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FERL+KIMK+HKNPKVLSEG+LW
Sbjct: 683 VVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFERLFKIMKEHKNPKVLSEGLLW 742
Query: 781 MVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 840
MVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATIKLLGALHKFVGPDIKGFL DV
Sbjct: 743 MVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATIKLLGALHKFVGPDIKGFLNDV 802
Query: 841 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS 900
KPALLSALD EYEKNPFEGT PK+ V + ++S SSGG D LPREDIS K TP L+K
Sbjct: 803 KPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSGGLDSLPREDISSKITPNLLKG 861
Query: 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 960
ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGLRGRL DSNKNLVM TL T+G
Sbjct: 862 FESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGLRGRLLDSNKNLVMQTLTTIGG 921
Query: 961 VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 1020
VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL LD WL AVHLDKM+PY+ ALT
Sbjct: 922 VAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAALDLWLGAVHLDKMIPYIILALT 981
Query: 1021 DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1080
D K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS AMTDKS+DVRKAAE CI EILR
Sbjct: 982 DGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTAMTDKSADVRKAAEGCISEILR 1041
Query: 1081 AGGQETIEKNLKDIQGPALALILERIKLN------GASQVSMGPTSKSSSKVPKSASNGV 1134
GQETIEKNLKDI GPALAL+LE+++ +S+ GP SK SK+ KS SNG
Sbjct: 1042 VSGQETIEKNLKDIHGPALALVLEKVRPGFVQEPFESSKAMAGPVSKGVSKISKSTSNGT 1101
Query: 1135 SKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDP 1194
K GNR SR +PTKG++ I SV D A+QSQALLN KDSNKEDRER+VVRR KFE+
Sbjct: 1102 LKQGNR---SRAVPTKGSQ---ITSVHDIAIQSQALLNTKDSNKEDRERVVVRRIKFEEL 1155
Query: 1195 RIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRW 1254
R EQI +LENDMMK+FREDL +RLLS DFKKQVDGLE+LQKALPS+ K+IIEVLDILLRW
Sbjct: 1156 RPEQILDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIEVLDILLRW 1215
Query: 1255 FVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREK 1314
FVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EAA+FLPCL EK GHNIEKVREK
Sbjct: 1216 FVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEAAIFLPCLAEKLGHNIEKVREK 1275
Query: 1315 MRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQI 1374
MREL KQ++ YS KT PYILEGLRSKNNRTRIEC DL+G+L++ G EI G LK L +
Sbjct: 1276 MRELMKQLIQAYSVAKTYPYILEGLRSKNNRTRIECTDLIGYLLETCGTEIGGLLKYLNM 1335
Query: 1375 VASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKK 1434
VASLTAERDGE+RKAALNT+ATGYKILG+DIW+YVGKLTDAQKSM+DDRFKWKV+EMEK+
Sbjct: 1336 VASLTAERDGELRKAALNTMATGYKILGDDIWKYVGKLTDAQKSMIDDRFKWKVKEMEKR 1395
Query: 1435 KEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRAL 1494
+EGKPGEARAALRRSVR+NG ++AEQSGD+SQ V GP R+NYG SE +ER+ +PR +
Sbjct: 1396 REGKPGEARAALRRSVRDNGPEVAEQSGDLSQIVPGPLFPRQNYGISEQILERNPVPRTI 1455
Query: 1495 ASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSC 1554
A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+NDPE S +DELVKDAD LVSC
Sbjct: 1456 AGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQASNDPEESAIDELVKDADGLVSC 1515
Query: 1555 LANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDE 1614
LANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+AV+E TL+SLITELLLWLLDE
Sbjct: 1516 LANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAHAVKEGTLESLITELLLWLLDE 1575
Query: 1615 RVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARN 1674
RVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LLRPLDPSRWPSPA+ E +A RN
Sbjct: 1576 RVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLLRPLDPSRWPSPATAEVYAVRN 1635
Query: 1675 QRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMV 1734
Q+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQELGMEEIRRRAGADDKPLRMV
Sbjct: 1636 QKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQELGMEEIRRRAGADDKPLRMV 1695
Query: 1735 KTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHW 1794
KTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLNLETLAAARMLT+TGP GQTHW
Sbjct: 1696 KTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLNLETLAAARMLTATGPVGQTHW 1755
Query: 1795 GDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQ 1854
DS ANNP+ NSAD QLKQEL AIFKKIGDKQT IGLY+LY IT+ YPKVDIF+QLQ
Sbjct: 1756 TDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSKIGLYDLYHITKSYPKVDIFSQLQ 1815
Query: 1855 NASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSPEFAPLSPVHTNSMND 1914
NASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++L + SP+ LS S++
Sbjct: 1816 NASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSSLALPSPDIPSLS-----SLDA 1870
Query: 1915 AKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENPLSDQRNERFGVTSGTLDAIRE 1974
MN +S+ YT+D R AS + P GV +GTLDAIRE
Sbjct: 1871 KPLMNPRSD--------LYTDDIR-----ASNMNP-------------GVMTGTLDAIRE 1904
Query: 1975 RMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQSRSSDRASVENP-AQGSVLPMDEKA 2033
RMK+MQL A++G +P ++PL+ NDN++ ++ QS + E P VLPMDEKA
Sbjct: 1905 RMKNMQL-ASSGTLEPVSKPLMPTNDNLS--MNQQSVPQSQMGQETPHTHPVVLPMDEKA 1961
Query: 2034 LSGLQARMERLKSGTIE 2050
LSGLQARMERLK G++E
Sbjct: 1962 LSGLQARMERLKGGSLE 1978
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30686489|ref|NP_565811.2| microtubule organization 1 protein [Arabidopsis thaliana] gi|75250086|sp|Q94FN2.1|MOR1_ARATH RecName: Full=Protein MOR1; AltName: Full=Protein GEM1; AltName: Full=Protein GEMINI POLLEN 1; AltName: Full=Protein MICROTUBULE ORGANIZATION 1; AltName: Full=Protein RID5; AltName: Full=Protein ROOT INITIATION DEFECTIVE 5 gi|14317953|gb|AAK59871.1|AF367246_1 microtubule organization 1 protein [Arabidopsis thaliana] gi|22252950|gb|AAM94170.1| MOR1/GEM1 [Arabidopsis thaliana] gi|330254039|gb|AEC09133.1| microtubule organization 1 protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 3040 bits (7882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1535/2057 (74%), Positives = 1732/2057 (84%), Gaps = 91/2057 (4%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVS 61
+E+EKLLKEAKKLPWEDRL HKNWKVRNEAN+DLA++ DSITDPKD R+R+ G
Sbjct: 3 TEDEKLLKEAKKLPWEDRLGHKNWKVRNEANVDLASVFDSITDPKDPRLRDFGH------ 56
Query: 62 DLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKA 121
LF+KTVADSNAPVQ+KALDALIA+L+A
Sbjct: 57 ---------------------------------LFRKTVADSNAPVQEKALDALIAFLRA 83
Query: 122 ADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVA 181
AD+DAGRYAKEVCDAIA KCLTGR TV+KAQA F+LWVELEAVDVFLD MEKAIKNKVA
Sbjct: 84 ADSDAGRYAKEVCDAIALKCLTGRKNTVDKAQAAFLLWVELEAVDVFLDTMEKAIKNKVA 143
Query: 182 KAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD 241
KAVVPA+DVMFQALSEFG+K+IPPKRILKMLPELFDHQDQNVRAS+KG+TLELCRWIGKD
Sbjct: 144 KAVVPAVDVMFQALSEFGSKVIPPKRILKMLPELFDHQDQNVRASAKGVTLELCRWIGKD 203
Query: 242 PVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEES 301
PVK+ILFEKMRDTMKKELE EL NV+ A+PTRKIR+EQDKE E S+ VG GPSEE+
Sbjct: 204 PVKSILFEKMRDTMKKELEAELANVTAGAKPTRKIRSEQDKEPEAEASSDVVGDGPSEEA 263
Query: 302 TADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 361
AD P EIDEY+L+DPVDILTPLEKSGFW+GVKATKWSERK+AVAELTKLASTK+IAPGD
Sbjct: 264 VADAPQEIDEYDLMDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLASTKKIAPGD 323
Query: 362 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTV 421
F+E+CRTLKKLITDVN+AVAVEAIQAIGNLA GLRTHFS SSRF+LPVLLEKLKEKK +V
Sbjct: 324 FSEICRTLKKLITDVNLAVAVEAIQAIGNLACGLRTHFSASSRFMLPVLLEKLKEKKQSV 383
Query: 422 AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 481
+ LTQTLQ M+KAGCLNLVDV+EDVKT+VKNKVPLVRS TL W+TFC+ETS+KA +LK
Sbjct: 384 TDPLTQTLQTMYKAGCLNLVDVIEDVKTAVKNKVPLVRSSTLTWLTFCLETSNKALILKA 443
Query: 482 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 541
HK+YVP+CMECLNDGTP+VRDAAFS LAAIAKSVGMRPLERS+EKLDDVR+ KLSEMIAG
Sbjct: 444 HKEYVPLCMECLNDGTPDVRDAAFSALAAIAKSVGMRPLERSLEKLDDVRKKKLSEMIAG 503
Query: 542 SGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 601
SGG GTSS VQ+S GS + S++SFVRKSAASMLSGKRP +A ASKK G KP
Sbjct: 504 SGGGDQAGTSSVTVQSSVGST-ATGNSDASFVRKSAASMLSGKRPAPSAQASKKVGTGKP 562
Query: 602 SAKKDG-SGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 660
K S + E SK E PEDVEP+EM LEEIE+RLGSL+ +TV QLKS+VWKERLEA
Sbjct: 563 GGGKKDGSVRNEGSKSVEPPEDVEPAEMGLEEIENRLGSLVKPETVSQLKSSVWKERLEA 622
Query: 661 ISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 720
+L++++E +Q LD+SVEILVRL+C +PGW+EKNVQVQQQVIE+I Y+++TA KFPKKC
Sbjct: 623 TLALKEEIEGLQELDKSVEILVRLLCAVPGWNEKNVQVQQQVIEIITYISSTAAKFPKKC 682
Query: 721 VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILW 780
VVLC+ G SERVADIKTRA AMKCLT F EAVGPGF+FERL+KIMK+HKNPKVLSEG+LW
Sbjct: 683 VVLCITGTSERVADIKTRASAMKCLTAFCEAVGPGFVFERLFKIMKEHKNPKVLSEGLLW 742
Query: 781 MVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 840
MVSAV+DFGVS LKLKDLIDFCKD GLQSS AATRNATIKLLGALHKFVGPDIKGFL DV
Sbjct: 743 MVSAVDDFGVSLLKLKDLIDFCKDVGLQSSTAATRNATIKLLGALHKFVGPDIKGFLNDV 802
Query: 841 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS 900
KPALLSALD EYEKNPFEGT PK+ V + ++S SSGG D LPREDIS K TP L+K
Sbjct: 803 KPALLSALDTEYEKNPFEGTAAPKRVV-KTSVSTSTSSGGLDSLPREDISTKITPNLLKG 861
Query: 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGA 960
ESPDWK+RLESIEAVNKILEEANKRIQP GTGELFGGLRGRL DSNKNLVM TL T+G
Sbjct: 862 FESPDWKMRLESIEAVNKILEEANKRIQPTGTGELFGGLRGRLLDSNKNLVMQTLTTIGG 921
Query: 961 VASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 1020
VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHMRECTL LD WL AVHLDKM+PY+ ALT
Sbjct: 922 VAAAMGPAVEKASKGILSDVLKCLGDNKKHMRECTLAALDLWLGAVHLDKMIPYIIIALT 981
Query: 1021 DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILR 1080
D K+GAEGRKDLFDWL+KQLTGLS F DA HLLKPAS AMTDKS+DVRKAAE CI EILR
Sbjct: 982 DGKMGAEGRKDLFDWLTKQLTGLSDFVDAIHLLKPASTAMTDKSADVRKAAEGCISEILR 1041
Query: 1081 AGGQETIEKNLKDIQGPALALILERIKLN------GASQVSMGPTSKSSSKVPKSASNGV 1134
GQE IEKNLKDIQGPALAL+LE+++ +S+ GP SK +K+ KS SNG
Sbjct: 1042 VSGQEMIEKNLKDIQGPALALVLEKVRPGFVQEPFESSKAMAGPVSKGVTKISKSTSNGT 1101
Query: 1135 SKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDP 1194
K GNR SR +PTKG+ I SV D A+QSQALLN KDSNKEDRER+VVRR KFE+
Sbjct: 1102 LKQGNR---SRAVPTKGS--SQITSVHDIAIQSQALLNTKDSNKEDRERVVVRRIKFEEL 1156
Query: 1195 RIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRW 1254
R EQIQ+LENDMMK+FREDL +RLLS DFKKQVDGLE+LQKALPS+ K+IIEVLD+LLRW
Sbjct: 1157 RPEQIQDLENDMMKFFREDLQKRLLSPDFKKQVDGLEILQKALPSVSKEIIEVLDVLLRW 1216
Query: 1255 FVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREK 1314
FVLQFCKSNTTCLLKVLEFLPELF+TLRDE Y +TE+EAA+FLPCL EK GHNIEKVREK
Sbjct: 1217 FVLQFCKSNTTCLLKVLEFLPELFNTLRDEEYCMTEAEAAIFLPCLAEKLGHNIEKVREK 1276
Query: 1315 MRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQI 1374
MREL KQI+ YS KT PYILEGLRSKNNRTRIEC DL+G+L++ G EI G LK L I
Sbjct: 1277 MRELMKQIIQAYSVGKTYPYILEGLRSKNNRTRIECTDLIGYLLETCGTEIGGLLKYLNI 1336
Query: 1375 VASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKK 1434
VASLTAERDGE+RKAALNT+ATGY+ILG DIW+YVGKLTDAQKSM+DDRFKWK ++MEK+
Sbjct: 1337 VASLTAERDGELRKAALNTMATGYQILGADIWKYVGKLTDAQKSMIDDRFKWKAKDMEKR 1396
Query: 1435 KEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRRNYGHSELHVERSIMPRAL 1494
+EGKPGEARAALRRSVR++G ++AEQSGD+SQ+V GP R++YG SE +ER+ +PR +
Sbjct: 1397 REGKPGEARAALRRSVRDSGPEVAEQSGDISQTVPGPLFPRQSYGISEQMLERTPVPRTI 1456
Query: 1495 ASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSC 1554
A V+GPTDWNEALDII FGSPEQSVEGMKVVCHELAQA+NDPE S +DELVKDAD LVSC
Sbjct: 1457 AGVNGPTDWNEALDIIMFGSPEQSVEGMKVVCHELAQASNDPEESAIDELVKDADGLVSC 1516
Query: 1555 LANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDE 1614
LANKVAKTFD SL GASSRSCKYVLNTLMQTFQNK+LA+AV+E TL+SLITELLLWLLDE
Sbjct: 1517 LANKVAKTFDVSLMGASSRSCKYVLNTLMQTFQNKKLAHAVKEGTLESLITELLLWLLDE 1576
Query: 1615 RVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARN 1674
RVP M+DGSQLLKALNVLMLKILDNADRTSSFVVLI+LLRPLDPSRWPSPA+ E +A RN
Sbjct: 1577 RVPRMEDGSQLLKALNVLMLKILDNADRTSSFVVLISLLRPLDPSRWPSPATAEVYAVRN 1636
Query: 1675 QRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLRMV 1734
Q+FSDLVVKCLIKLTK+LQSTIY+VDLDR+LQSIHVYLQ+LGMEEIRRRAGADDKPLRMV
Sbjct: 1637 QKFSDLVVKCLIKLTKLLQSTIYEVDLDRLLQSIHVYLQDLGMEEIRRRAGADDKPLRMV 1696
Query: 1735 KTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARMLTSTGPGGQTHW 1794
KTVLHELVKLRGAAIKGHLS+VPIDM+PQPIILAYIDLNLETLAAARMLT+TGP GQTHW
Sbjct: 1697 KTVLHELVKLRGAAIKGHLSLVPIDMRPQPIILAYIDLNLETLAAARMLTATGPVGQTHW 1756
Query: 1795 GDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQLYPKVDIFAQLQ 1854
DS ANNP+ NSAD QLKQEL AIFKKIGDKQT TIGLY+LY IT+ YPKVDIF+QLQ
Sbjct: 1757 TDSTANNPSPPANSADVQLKQELGAIFKKIGDKQTSTIGLYDLYHITKSYPKVDIFSQLQ 1816
Query: 1855 NASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSPEFAPLSPVHTNSMND 1914
NASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P++TPPP++L + SP+ LS + +
Sbjct: 1817 NASEAFRTYIRDGLAQVEKNAAAGRTPSSLPLSTPPPSSLALPSPDIPSLSSLDVKPL-- 1874
Query: 1915 AKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENPLSDQRNERFGVTSGTLDAIRE 1974
MN +S+ YT+D R AS + P GV +GTLDAIRE
Sbjct: 1875 ---MNPRSD--------LYTDDIR-----ASNMNP-------------GVMTGTLDAIRE 1905
Query: 1975 RMKSMQLAAAAGNPDPGNRPLINMNDNVNNGLSSQSRSSDRASVEN-PAQGSVLPMDEKA 2033
RMK+MQLA++ +P ++PL+ NDN++ ++ QS + E VLPMDEKA
Sbjct: 1906 RMKNMQLASS----EPVSKPLMPTNDNLS--MNQQSVPPSQMGQETVHTHPVVLPMDEKA 1959
Query: 2034 LSGLQARMERLKSGTIE 2050
LSGLQARMERLK G++E
Sbjct: 1960 LSGLQARMERLKGGSLE 1976
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413952123|gb|AFW84772.1| hypothetical protein ZEAMMB73_280693 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 2863 bits (7421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1445/2068 (69%), Positives = 1700/2068 (82%), Gaps = 95/2068 (4%)
Query: 2 SEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVS 61
+E+EKLLKEAKKLPW++RL HKNWKVRN+ANIDLAALCDSITDPKD R+RE G
Sbjct: 3 TEDEKLLKEAKKLPWDERLQHKNWKVRNDANIDLAALCDSITDPKDARLREFG------- 55
Query: 62 DLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKA 121
PLF+KTVADSNAPVQ+KALDAL+A+ +A
Sbjct: 56 --------------------------------PLFRKTVADSNAPVQEKALDALLAFQRA 83
Query: 122 ADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVA 181
ADADA RYAKEVCD+I AKCLTGRPKTVEKAQA F+LWVELEA +VFL+ MEKA+KNKVA
Sbjct: 84 ADADASRYAKEVCDSIVAKCLTGRPKTVEKAQAAFLLWVELEASEVFLEAMEKAVKNKVA 143
Query: 182 KAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD 241
KAVVPAIDVMFQALSEFG K++PPK+ILKMLPELFDH DQNVRASSKGLTLELCRWIGKD
Sbjct: 144 KAVVPAIDVMFQALSEFGTKVVPPKKILKMLPELFDHPDQNVRASSKGLTLELCRWIGKD 203
Query: 242 PVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEES 301
PVK+ILFEKMRDTMKKELE EL NVSG A+PTRKIR+EQ+KEL +E + E G SEE+
Sbjct: 204 PVKSILFEKMRDTMKKELEAELANVSGLAKPTRKIRSEQEKELEEESVPETSGANTSEEA 263
Query: 302 TADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD 361
D P EIDEY+LVDPVDILTPLEKSGFW+GVKATKWSER+DAVAELTKL S K+IAPGD
Sbjct: 264 ATDAPVEIDEYDLVDPVDILTPLEKSGFWDGVKATKWSERRDAVAELTKLGSAKKIAPGD 323
Query: 362 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTV 421
F E+CRTLKKLITDVN+AV+VEA QAIGNLARGLR FSG++R LLPVLLEKLKEKKPT+
Sbjct: 324 FHEICRTLKKLITDVNLAVSVEATQAIGNLARGLRAQFSGNARMLLPVLLEKLKEKKPTM 383
Query: 422 AESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV 481
E+L+QTLQAMHK+GC L+DV+EDV+ +VKNKVPLVRSLTL WV FCIETS+KA VLK+
Sbjct: 384 TEALSQTLQAMHKSGCFTLIDVIEDVRAAVKNKVPLVRSLTLTWVAFCIETSNKATVLKL 443
Query: 482 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 541
HK+YVPICMECLNDGTPEVRDA+FSVL AIAK VGM+PLERS+EKLDDVR+ KLS+MI G
Sbjct: 444 HKEYVPICMECLNDGTPEVRDASFSVLTAIAKMVGMKPLERSLEKLDDVRKKKLSDMI-G 502
Query: 542 SGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 601
S D + +A + TSG + + ++S +++SAASMLSGK+PV AA A+KK GP K
Sbjct: 503 SSSDSVLSSGTAPITTSGAATSARGVADSMSMKRSAASMLSGKKPVQAAAATKKSGPSKS 562
Query: 602 S-AKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 660
+ AKK G Q + EDVEP+EMS EEIE RL S++ A+T+ QLKS+VWKERLEA
Sbjct: 563 TAAKKTDGGSQSKASAALEIEDVEPAEMSFEEIEERLKSVVKAETISQLKSSVWKERLEA 622
Query: 661 ISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKC 720
I L+Q+VE + LD+S E+L+RL+C +PGWSEKNVQVQQQVIEV Y+A+T KFPK+C
Sbjct: 623 IGVLKQEVENLTELDKSAELLIRLLCAVPGWSEKNVQVQQQVIEVNTYIASTVNKFPKRC 682
Query: 721 VVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILW 780
VVLCLLG+SERVADIKTR AMKCLT F EAVGPGF+FERLYKIMK+HKNPKVLSEGILW
Sbjct: 683 VVLCLLGVSERVADIKTRTSAMKCLTAFCEAVGPGFVFERLYKIMKEHKNPKVLSEGILW 742
Query: 781 MVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 840
MVSAVEDFG+S+LKLKD+IDFCKDTGLQSSAA TRNATIKL+G LHKFVGPDIKGFL+DV
Sbjct: 743 MVSAVEDFGISNLKLKDMIDFCKDTGLQSSAAVTRNATIKLIGMLHKFVGPDIKGFLSDV 802
Query: 841 KPALLSALDAEYEKNPFEG--TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV 898
KPALLSALD EYEKNPFEG PK+TVR ++ SSVS+G DGLPREDIS K TPTL+
Sbjct: 803 KPALLSALDTEYEKNPFEGAAAAAPKRTVRVLDTASSVSAGLFDGLPREDISAKITPTLL 862
Query: 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL 958
K+L SPDWKVRLESI+AV KI+EEANKRIQP GT +LF LRGRLYDSNKNLVMATL T+
Sbjct: 863 KNLGSPDWKVRLESIDAVTKIVEEANKRIQPTGTADLFSALRGRLYDSNKNLVMATLSTI 922
Query: 959 GAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTA 1018
G +A AMGP+VEKSSKG+L+D+LKCLGDNKKHMRECTLT LD+W+AA LDKMVPY+ +
Sbjct: 923 GGLAYAMGPSVEKSSKGILADVLKCLGDNKKHMRECTLTALDSWIAAAQLDKMVPYIIVS 982
Query: 1019 LTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEI 1078
L D K G+EGRKDLFDWLSK ++ +S +A LLKP++ ++ DKSS+VRKAAE+ + EI
Sbjct: 983 LGDQKTGSEGRKDLFDWLSKHVSKMSDPSEALPLLKPSASSLMDKSSEVRKAAESFMNEI 1042
Query: 1079 LRAGGQETIEKNLKDIQGPALALILERIKLNGASQ-----VSMGPTSKSSSKVPKSASNG 1133
LR GQE + +NLKD+ P LA++ ER+KL+ + V M TS S +P A
Sbjct: 1043 LRICGQEVVGRNLKDLPSPTLAIVSERLKLSTVHEGFSESVKMVTTSMS---LPSKAGLK 1099
Query: 1134 VSKHG--------NRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMV 1185
+KHG + +S R +P + + +++S QD A QSQAL N+KDSNKE+RER V
Sbjct: 1100 NNKHGLNDRGSNVGKLVSQRGLPARAS--VTMVSTQDPA-QSQALFNIKDSNKEERERRV 1156
Query: 1186 -VRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDI 1244
VR+FKFE+PR EQI EL+ D+ K+FRED+ RL ++DFK+Q+DG+E+LQKALPS K++
Sbjct: 1157 LVRKFKFEEPRREQIDELKIDLFKHFREDVSLRLWNSDFKRQIDGIELLQKALPSSWKEV 1216
Query: 1245 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1304
IE+LDILLRWFVL+FC+SNTTCLLKVL+FLPELFD L+D+ Y LTE+EAA+FLPCL+EKS
Sbjct: 1217 IELLDILLRWFVLRFCESNTTCLLKVLDFLPELFDILKDQSYMLTEAEAAIFLPCLIEKS 1276
Query: 1305 GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE 1364
GHNIEKVREKM EL KQ++N YS K +PYILEGLRSKNNRTRIECVD+VG+ IDHHG E
Sbjct: 1277 GHNIEKVREKMGELIKQMINIYSLPKLIPYILEGLRSKNNRTRIECVDIVGYFIDHHGTE 1336
Query: 1365 ISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1424
+ G +K+L VA+LTAERDGEIRKAALNTLAT YK LG+D+WRYVGKL+DAQ+SMLDDRF
Sbjct: 1337 VGGLMKNLPSVAALTAERDGEIRKAALNTLATAYKNLGDDVWRYVGKLSDAQRSMLDDRF 1396
Query: 1425 KWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGD-VSQSVSGPTLMRRNYGHSEL 1483
KWK REM+K++EG+PG+ARAALRRSVRENGSDIAEQSG+ VS+ V+G +++ R++G+++
Sbjct: 1397 KWKAREMDKRREGRPGDARAALRRSVRENGSDIAEQSGEVVSRPVAG-SMISRDFGYADA 1455
Query: 1484 HVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDPEGSVMDE 1543
H++R ++PR + S SGP DW EAL+I++ G PEQSVEGMKV+CHEL QA DPE +++++
Sbjct: 1456 HMDRHMVPRQIPSTSGPVDWREALEIVALGLPEQSVEGMKVICHELTQAA-DPESTLLED 1514
Query: 1544 LVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQESTLDSL 1603
L+K+ADRLVSCLA V KTF+FSL+GASSRSCKYVLNTLMQTFQ KRLA+AV+E TLD+L
Sbjct: 1515 LIKEADRLVSCLAVMVPKTFNFSLSGASSRSCKYVLNTLMQTFQIKRLAHAVKEGTLDNL 1574
Query: 1604 ITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDPSRWPS 1663
ITELLLWLLDERVP MDDGSQLLKALNVLMLKILDNA+RTSSFVVLINLLRPLDPSRWPS
Sbjct: 1575 ITELLLWLLDERVPLMDDGSQLLKALNVLMLKILDNAERTSSFVVLINLLRPLDPSRWPS 1634
Query: 1664 PASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHVYLQELGMEEIRRR 1723
P ES A +NQ+FSDLVVKCLIKLTKVLQSTIY+VDLDRILQSIH+YLQELGMEEIRRR
Sbjct: 1635 PTPTESLAVKNQKFSDLVVKCLIKLTKVLQSTIYEVDLDRILQSIHIYLQELGMEEIRRR 1694
Query: 1724 AGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPIILAYIDLNLETLAAARML 1783
AGADDKPLRMVKTVLHELVKLRG AIKGHLSMVPID +PQPIILAYIDLNL+TLAAARML
Sbjct: 1695 AGADDKPLRMVKTVLHELVKLRGTAIKGHLSMVPIDAEPQPIILAYIDLNLQTLAAARML 1754
Query: 1784 TSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQL 1843
T +GP GQTHWGD+A+NNP +T+SADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQL
Sbjct: 1755 TPSGPMGQTHWGDAASNNPNPSTHSADAQLKQELAAIFKKIGDKQTCTIGLYELYRITQL 1814
Query: 1844 YPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVPMATPPPAALGVSSPEFAP 1903
YPKVDIFAQLQNASEAFRTYIRDGLAQ+EKNAAAGR PSS+P++T PP + +P+FAP
Sbjct: 1815 YPKVDIFAQLQNASEAFRTYIRDGLAQVEKNAAAGRMPSSLPLST-PPPIAAIPNPKFAP 1873
Query: 1904 LSPVHTNSMNDAKSMNVKSEPTNFNLPPSYTEDNRIGGAIASKVLPPENPLSDQRNERFG 1963
SPVHT S+ Y EDN G ++ + ++DQ+ +R+
Sbjct: 1874 -SPVHTKSIGKT----------------DYNEDNASG---ETQPFRGQGAITDQQTDRYH 1913
Query: 1964 VTSGTLDAIRERMKSMQLAAAAGNPDPGN-RPLINMNDNVNNGLSSQSRSSDRASVENPA 2022
++GTLDA+RERMKS+Q AAA G+ D RPL +MN S+ R E
Sbjct: 1914 TSAGTLDALRERMKSIQ-AAAIGHFDGAQARPLASMNG------SNMVHGGTRLDGEPQQ 1966
Query: 2023 QGSVLPMDEKALSGLQARMERLKSGTIE 2050
+ ++ PMDE+ALSGLQARMERLKSG++E
Sbjct: 1967 RSNIPPMDERALSGLQARMERLKSGSME 1994
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2052 | ||||||
| TAIR|locus:2058739 | 1978 | MOR1 "MICROTUBULE ORGANIZATION | 0.885 | 0.919 | 0.741 | 0.0 | |
| UNIPROTKB|E1B7K5 | 2032 | CKAP5 "Uncharacterized protein | 0.487 | 0.492 | 0.297 | 1.9e-169 | |
| UNIPROTKB|E2RSW0 | 2033 | CKAP5 "Uncharacterized protein | 0.524 | 0.529 | 0.288 | 7.2e-169 | |
| UNIPROTKB|Q14008 | 2032 | CKAP5 "Cytoskeleton-associated | 0.524 | 0.529 | 0.289 | 7.6e-167 | |
| UNIPROTKB|F1P0Y0 | 2036 | CKAP5 "Uncharacterized protein | 0.487 | 0.491 | 0.297 | 3.1e-165 | |
| MGI|MGI:1923036 | 2032 | Ckap5 "cytoskeleton associated | 0.489 | 0.494 | 0.292 | 4.5e-165 | |
| ZFIN|ZDB-GENE-051120-174 | 2033 | ckap5 "cytoskeleton associated | 0.469 | 0.474 | 0.299 | 1.8e-157 | |
| UNIPROTKB|F1M949 | 1778 | Ckap5 "Protein Ckap5" [Rattus | 0.389 | 0.449 | 0.292 | 4.8e-143 | |
| DICTYBASE|DDB_G0268616 | 2013 | cepJ "centrosomal protein 224 | 0.244 | 0.249 | 0.269 | 2.4e-119 | |
| UNIPROTKB|F1SIB5 | 1517 | F1SIB5 "Uncharacterized protei | 0.248 | 0.335 | 0.313 | 2.6e-113 |
| TAIR|locus:2058739 MOR1 "MICROTUBULE ORGANIZATION 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6886 (2429.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 1358/1832 (74%), Positives = 1520/1832 (82%)
Query: 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKA 152
G LF+KTVADSNAPVQ+KALDALIA+L+AAD+DAGRYAKEVCDAIA KCLTGR TV+KA
Sbjct: 55 GHLFRKTVADSNAPVQEKALDALIAFLRAADSDAGRYAKEVCDAIALKCLTGRKNTVDKA 114
Query: 153 QAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKML 212
QA F+LWVELEAVDVFLD ME +DVMFQALSEFG+K+IPPKRILKML
Sbjct: 115 QAAFLLWVELEAVDVFLDTMEKAIKNKVAKAVVPAVDVMFQALSEFGSKVIPPKRILKML 174
Query: 213 PELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARP 272
PELFDHQDQNVRAS+KG+TLELCRWIGKDPVK+ILFEKMRDTMKKELE EL NV+ A+P
Sbjct: 175 PELFDHQDQNVRASAKGVTLELCRWIGKDPVKSILFEKMRDTMKKELEAELANVTAGAKP 234
Query: 273 TRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEG 332
TRKIR+EQDKE E S+ VG GPSEE+ AD P EIDEY+L+DPVDILTPLEKSGFW+G
Sbjct: 235 TRKIRSEQDKEPEAEASSDVVGDGPSEEAVADAPQEIDEYDLMDPVDILTPLEKSGFWDG 294
Query: 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLA 392
VKATKWSERK+AVAELTKLASTK+IAPGDF+E+CRTLKKLITDVN+AVAVEAIQAIGNLA
Sbjct: 295 VKATKWSERKEAVAELTKLASTKKIAPGDFSEICRTLKKLITDVNLAVAVEAIQAIGNLA 354
Query: 393 RGLRTHFSGSSRFXXXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 452
GLRTHFS SSRF +V + LTQTLQ M+KAGCLNLVDV+EDVKT+VK
Sbjct: 355 CGLRTHFSASSRFMLPVLLEKLKEKKQSVTDPLTQTLQTMYKAGCLNLVDVIEDVKTAVK 414
Query: 453 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512
NKVPLVRS TL W+TFC+ETS+KA +LK HK+YVP+CMECLNDGTP+VRDAAFS LAAIA
Sbjct: 415 NKVPLVRSSTLTWLTFCLETSNKALILKAHKEYVPLCMECLNDGTPDVRDAAFSALAAIA 474
Query: 513 KSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSF 572
KSVGMRPLERS+EKLDDVR+ KLSEMIAGSGG GTSS VQ+S GS + S++SF
Sbjct: 475 KSVGMRPLERSLEKLDDVRKKKLSEMIAGSGGGDQAGTSSVTVQSSVGSTATGN-SDASF 533
Query: 573 VRKSAASMLSGKRPVSAAPASKKGGPVKPSA-KKDGSGKQETSKLTEAPEDVEPSEMSLE 631
VRKSAASMLSGKRP +A ASKK G KP KKDGS + E SK E PEDVEP+EM LE
Sbjct: 534 VRKSAASMLSGKRPAPSAQASKKVGTGKPGGGKKDGSVRNEGSKSVEPPEDVEPAEMGLE 593
Query: 632 EIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGW 691
EIE+RLGSL+ +TV QLKS+VWKERLEA +L++++E +Q LD+SVEILVRL+C +PGW
Sbjct: 594 EIENRLGSLVKPETVSQLKSSVWKERLEATLALKEEIEGLQELDKSVEILVRLLCAVPGW 653
Query: 692 SEKNXXXXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEA 751
+EKN Y+++TA KFPKKCVVLC+ G SERVADIKTRA AMKCLT F EA
Sbjct: 654 NEKNVQVQQQVIEIITYISSTAAKFPKKCVVLCITGTSERVADIKTRASAMKCLTAFCEA 713
Query: 752 VGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSA 811
VGPGF+FERL+KIMK+HKNPKVLSEG+LWMVSAV+DFGVS LKLKDLIDFCKD GLQSS
Sbjct: 714 VGPGFVFERLFKIMKEHKNPKVLSEGLLWMVSAVDDFGVSLLKLKDLIDFCKDVGLQSST 773
Query: 812 AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXX 871
AATRNATIKLLGALHKFVGPDIKGFL DVKPALLSALD EYEKNPFEGT PK+ V+
Sbjct: 774 AATRNATIKLLGALHKFVGPDIKGFLNDVKPALLSALDTEYEKNPFEGTAAPKRVVKTSV 833
Query: 872 XXXXXXXXXXXXLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG 931
LPREDIS K TP L+K ESPDWK+RLESIEAVNKILEEANKRIQP G
Sbjct: 834 STSTSSGGLDS-LPREDISTKITPNLLKGFESPDWKMRLESIEAVNKILEEANKRIQPTG 892
Query: 932 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHM 991
TGELFGGLRGRL DSNKNLVM TL T+G VA+AMGPAVEK+SKG+LSD+LKCLGDNKKHM
Sbjct: 893 TGELFGGLRGRLLDSNKNLVMQTLTTIGGVAAAMGPAVEKASKGILSDVLKCLGDNKKHM 952
Query: 992 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH 1051
RECTL LD WL AVHLDKM+PY+ ALTD K+GAEGRKDLFDWL+KQLTGLS F DA H
Sbjct: 953 RECTLAALDLWLGAVHLDKMIPYIIIALTDGKMGAEGRKDLFDWLTKQLTGLSDFVDAIH 1012
Query: 1052 LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN-- 1109
LLKPAS AMTDKS+DVRKAAE CI EILR GQE IEKNLKDIQGPALAL+LE+++
Sbjct: 1013 LLKPASTAMTDKSADVRKAAEGCISEILRVSGQEMIEKNLKDIQGPALALVLEKVRPGFV 1072
Query: 1110 ----GASQVSMGPTXXXXXXXXXXXXNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAV 1165
+S+ GP NG K GNR SR +PTKG+ I SV D A+
Sbjct: 1073 QEPFESSKAMAGPVSKGVTKISKSTSNGTLKQGNR---SRAVPTKGS--SQITSVHDIAI 1127
Query: 1166 QSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKK 1225
QSQALLN KDSNKEDRER+VVRR KFE+ R EQIQ+LENDMMK+FREDL +RLLS DFKK
Sbjct: 1128 QSQALLNTKDSNKEDRERVVVRRIKFEELRPEQIQDLENDMMKFFREDLQKRLLSPDFKK 1187
Query: 1226 QVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEG 1285
QVDGLE+LQKALPS+ K+IIEVLD+LLRWFVLQFCKSNTTCLLKVLEFLPELF+TLRDE
Sbjct: 1188 QVDGLEILQKALPSVSKEIIEVLDVLLRWFVLQFCKSNTTCLLKVLEFLPELFNTLRDEE 1247
Query: 1286 YSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNR 1345
Y +TE+EAA+FLPCL EK GHNIEKVREKMREL KQI+ YS KT PYILEGLRSKNNR
Sbjct: 1248 YCMTEAEAAIFLPCLAEKLGHNIEKVREKMRELMKQIIQAYSVGKTYPYILEGLRSKNNR 1307
Query: 1346 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1405
TRIEC DL+G+L++ G EI G LK L IVASLTAERDGE+RKAALNT+ATGY+ILG DI
Sbjct: 1308 TRIECTDLIGYLLETCGTEIGGLLKYLNIVASLTAERDGELRKAALNTMATGYQILGADI 1367
Query: 1406 WRYVGKLTDAQKSMLDDRFKWKVRXXXXXXXXXXXXARAALRRSVRENGSDIAEQSGDVS 1465
W+YVGKLTDAQKSM+DDRFKWK + ARAALRRSVR++G ++AEQSGD+S
Sbjct: 1368 WKYVGKLTDAQKSMIDDRFKWKAKDMEKRREGKPGEARAALRRSVRDSGPEVAEQSGDIS 1427
Query: 1466 QSVSGPTLMRRNYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVV 1525
Q+V GP R++YG SE +ER+ +PR +A V+GPTDWNEALDII FGSPEQSVEGMKVV
Sbjct: 1428 QTVPGPLFPRQSYGISEQMLERTPVPRTIAGVNGPTDWNEALDIIMFGSPEQSVEGMKVV 1487
Query: 1526 CHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQT 1585
CHELAQA+NDPE S +DELVKDAD LVSCLANKVAKTFD SL GASSRSCKYVLNTLMQT
Sbjct: 1488 CHELAQASNDPEESAIDELVKDADGLVSCLANKVAKTFDVSLMGASSRSCKYVLNTLMQT 1547
Query: 1586 FQNKRLAYAVQXXXXXXXXXXXXXXXXXERVPHMDDGSQLLKALNVLMLKILDNADRTSS 1645
FQNK+LA+AV+ ERVP M+DGSQLLKALNVLMLKILDNADRTSS
Sbjct: 1548 FQNKKLAHAVKEGTLESLITELLLWLLDERVPRMEDGSQLLKALNVLMLKILDNADRTSS 1607
Query: 1646 FVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQSTIYDVDLDRIL 1705
FVVLI+LLRPLDPSRWPSPA+ E +A RNQ+FSDLVVKCLIKLTK+LQSTIY+VDLDR+L
Sbjct: 1608 FVVLISLLRPLDPSRWPSPATAEVYAVRNQKFSDLVVKCLIKLTKLLQSTIYEVDLDRLL 1667
Query: 1706 QSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDMKPQPI 1765
QSIHVYLQ+LGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLS+VPIDM+PQPI
Sbjct: 1668 QSIHVYLQDLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSLVPIDMRPQPI 1727
Query: 1766 ILAYIDLNLETLAAARMLTSTGPGGQTHWGXXXXXXXXXXXXXXXXQLKQELAAIFKKIG 1825
ILAYIDLNLETLAAARMLT+TGP GQTHW QLKQEL AIFKKIG
Sbjct: 1728 ILAYIDLNLETLAAARMLTATGPVGQTHWTDSTANNPSPPANSADVQLKQELGAIFKKIG 1787
Query: 1826 DKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSVP 1885
DKQT TIGLY+LY IT+ YPKVDIF+QLQNASEAFRTYIRDGLAQ+EKNAAAGRTPSS+P
Sbjct: 1788 DKQTSTIGLYDLYHITKSYPKVDIFSQLQNASEAFRTYIRDGLAQVEKNAAAGRTPSSLP 1847
Query: 1886 MATPPPAALGVSSPEFAPLSPVHTNSMNDAKS 1917
++TPPP++L + SP+ LS + + + +S
Sbjct: 1848 LSTPPPSSLALPSPDIPSLSSLDVKPLMNPRS 1879
|
|
| UNIPROTKB|E1B7K5 CKAP5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1109 (395.4 bits), Expect = 1.9e-169, Sum P(4) = 1.9e-169
Identities = 312/1047 (29%), Positives = 510/1047 (48%)
Query: 92 LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVE 150
LG L KK V DSNA VQ K L+A + Y++ A AG+ EV + +K + K E
Sbjct: 50 LG-LIKKFVTDSNAVVQLKGLEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKE 107
Query: 151 KAQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILK 210
+ ++++E+E + + + I+ + +ALSEFG+KII K I+K
Sbjct: 108 LGMEICLMYIEIEKGEAVQEELLKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIK 167
Query: 211 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGT 269
+LP+LF+ +++ VR +K + +E+ RWI +D ++ L + + KELE E V + +G
Sbjct: 168 VLPKLFESREKAVRDEAKLIAVEIYRWI-RDALRPPL-QNINPVQLKELEEEWVKLPTGA 225
Query: 270 ARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGF 329
RP R +R++Q+ E E G D P+ID YEL++ V+IL+ L K F
Sbjct: 226 PRPARFLRSQQELEAKLEQQQSAGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-F 284
Query: 330 WEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAI 388
++ ++A KW ERK+A+ + L ++ GD+ ++ + LKK++ D N+ + A + +
Sbjct: 285 YDKIEAKKWQERKEALEAVEVLVKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCL 344
Query: 389 GNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVK 448
LA GLR F + V ++L + + A+ L ++ EDV
Sbjct: 345 TGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVL 402
Query: 449 TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSV 507
+ NK P ++ T ++ + + + K + K + ++ +ND PEVRDAAF
Sbjct: 403 AVMDNKNPTIKQQTSLFIARSFRHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEA 462
Query: 508 LAAIAKSVG---MRPLERSIEKL--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGS 561
L K VG + P ++KL D ++ ++ E++ G +A + G +
Sbjct: 463 LGTALKVVGEKAVNPFLADVDKLKLDKIKECSEKVELVHGKKAGLAADKKDFK-PVPGRA 521
Query: 562 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLT 617
S A + K A++ G P+ APA+K GGP K A + G+G T K
Sbjct: 522 AASGAAGDKD--TKDASAPKPG--PLKKAPAAKPGGPPKKGKPAAQGGTGGTGTKSKKAV 577
Query: 618 EAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS 677
E E VEP E+S+E E + +++PA + L S+ WKERL + ++ VE + +
Sbjct: 578 ETKEMVEP-ELSIEVCEEKASAVLPATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMP 636
Query: 678 VEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKT 737
+ LVR++ PGW E N +A F K + L G+ +++ D+K
Sbjct: 637 CQALVRMLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKC 695
Query: 738 RAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD 797
+A + +T +EA + E++ + KNPK SE + W+ +A+++FG S L +K
Sbjct: 696 GNNAKEAMTAIAEACVLPWTAEQVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKA 755
Query: 798 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF 857
I K T L ++ A R + I LLG ++ +VGP ++ F D KPALLS +DAE+EK
Sbjct: 756 FISNVK-TALAATNPAVRTSAITLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQG 814
Query: 858 EGTVVPKKTVRAXXXXXXXX-----------XXXXXXLPREDISGKFTPTLVKSLESPDW 906
+ P + + LPR +IS K T LV + +W
Sbjct: 815 QNPPAPTRGISKHSTSGTDEGEDGDEPDDGGSDAVDLLPRTEISDKITSELVSKIGDKNW 874
Query: 907 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG 966
K+R E ++ V I+ EA K IQP GEL L+GRL DSNK LV TL L +A AMG
Sbjct: 875 KIRKEGLDEVAAIINEA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLTILQQLAVAMG 932
Query: 967 PAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGA 1026
P +++ K + ++ LGD+K ++R L ++AW + + + + K
Sbjct: 933 PNIKQHVKNLGIPVITVLGDSKNNVRSAALATVNAWAEQTGMKEWLEGEDLSEELKKENP 992
Query: 1027 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQE 1085
R++L WL+++L L P L P + + D++ DVRK A+ + + G E
Sbjct: 993 FLRQELLGWLAEKLPTLRSTPTDLILCVPQLYSCLEDRNGDVRKKAQDALPFFMMHLGYE 1052
Query: 1086 TIEK---NLKDIQGPALALILERIKLN 1109
+ K LK + +LE+ K N
Sbjct: 1053 KMAKATGKLKPTSKDQVLAMLEKAKAN 1079
|
|
| UNIPROTKB|E2RSW0 CKAP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1104 (393.7 bits), Expect = 7.2e-169, Sum P(4) = 7.2e-169
Identities = 324/1122 (28%), Positives = 537/1122 (47%)
Query: 92 LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVE 150
LG L KK V DSNA VQ K L+A + Y++ A AG+ EV + +K + K E
Sbjct: 50 LG-LIKKLVTDSNAVVQLKGLEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKE 107
Query: 151 KAQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILK 210
+ ++++E+E + + + I+ + +ALSEFG+KII K I+K
Sbjct: 108 LGIEICLMYIEIEKGEAVQEELLKGLDNKNPKIVVACIETLRKALSEFGSKIILLKPIIK 167
Query: 211 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGT 269
+LP+LF+ +++ VR +K + +E+ RWI +D ++ L + + KELE E V + +G
Sbjct: 168 VLPKLFESREKAVRDEAKLIAVEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTGA 225
Query: 270 ARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGF 329
+P+R +R++Q+ E E G D P+ID YEL++ V+IL+ L K F
Sbjct: 226 PKPSRFLRSQQELEAKLEQQQSAGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-F 284
Query: 330 WEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAI 388
++ ++A KW ERK+A+ + L ++ GD+ ++ + LKK++ D N+ + A + +
Sbjct: 285 YDKIEAKKWQERKEALEAVEVLVKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCL 344
Query: 389 GNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVK 448
LA GLR F + V ++L + + A+ L ++ EDV
Sbjct: 345 TGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVL 402
Query: 449 TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSV 507
+ NK P ++ T ++ + + + K + K + ++ +ND PEVRDAAF
Sbjct: 403 AVMDNKNPTIKQQTSLFIARSFRHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEA 462
Query: 508 LAAIAKSVGMRPLERSIEKLDDVRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPS 564
L K VG + + + +D ++ +K+ SE + G A G ++ + ++ VP
Sbjct: 463 LGTALKVVGEKAVNPFLADVDKLKLDKIKECSEKVELVHGKKA-GLAADKKESK--PVPG 519
Query: 565 VEASESSFVRKSAASMLSGKR-PVSAAPASKKGGPVK---PSAK-KDGSGKQETSKLTEA 619
A+ + K + + K P+ AP +K GGP K P+A GS + K E
Sbjct: 520 RTATSGAAGDKDTKDISAPKPGPLKKAPTTKAGGPPKKGKPAAPGSTGSAGTKNKKGPET 579
Query: 620 PEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVE 679
E VEP E+S+E E + +++PA + L S+ WKERL + ++ VE + + +
Sbjct: 580 KEIVEP-ELSIEVCEEKASAVLPATCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQ 638
Query: 680 ILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRA 739
LVR++ PGW E N +A F K + L G+ +++ D+K
Sbjct: 639 ALVRMLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKCGN 697
Query: 740 HAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 799
+A + +T +EA + E++ + KNPK SE + W+ +A+++FG S L +K I
Sbjct: 698 NAKEAMTAIAEACMLPWTAEQVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFI 757
Query: 800 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 859
K T L ++ A R + I LLG ++ +VGP ++ F D KPALLS +DAE+EK +
Sbjct: 758 SNVK-TALAATNPAVRTSAITLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQS 816
Query: 860 TVVPKKTVRAXXXXXXXX-----------XXXXXXLPREDISGKFTPTLVKSLESPDWKV 908
P + + LPR +IS K T LV + +WK+
Sbjct: 817 PPAPTRGISKHSISGTDEGEDGDEPDEVGTDVVDLLPRTEISDKITSELVSKISDKNWKI 876
Query: 909 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 968
R E ++ V I+ EA K IQP GEL L+GRL DSNK LV TL L +A AMGP
Sbjct: 877 RKEGLDEVAGIINEA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPN 934
Query: 969 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEG 1028
+++ K + I+ LGD+K ++R L ++AW + + + + K
Sbjct: 935 IKQHVKNLGIPIITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFL 994
Query: 1029 RKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETI 1087
R++L WL+++L L P L P + + D++ DVRK A+ + + G E +
Sbjct: 995 RQELLGWLAEKLPTLRSTPTDLILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKM 1054
Query: 1088 EK---NLKDIQGPALALILERIKLNGASQ--VSMGPTXXXXXXXXXXXXNGVSKHGNRAI 1142
K LK + +LE+ K N ++ S + S ++
Sbjct: 1055 AKATGKLKPTSKDQVLAMLEKAKANMPAKPAASAKASSKPMGGSAPAKFQPSSAPVEDSV 1114
Query: 1143 SSRVIPTKGARPESIMSVQDFAVQSQAL-LNVKDSNKEDRER 1183
SS V P + + V A +Q + K S KED ++
Sbjct: 1115 SSTVEPKPDPKKAKALGVSSKAKSAQGKKVPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|Q14008 CKAP5 "Cytoskeleton-associated protein 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1091 (389.1 bits), Expect = 7.6e-167, Sum P(4) = 7.6e-167
Identities = 325/1123 (28%), Positives = 534/1123 (47%)
Query: 92 LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVE 150
LG L KK V DSNA VQ K L+A + Y++ A AG+ EV + +K + K E
Sbjct: 50 LG-LIKKFVTDSNAVVQLKGLEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKE 107
Query: 151 KAQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILK 210
+ ++++E+E + + + I+ + +ALSEFG+KII K I+K
Sbjct: 108 LGIEICLMYIEIEKGEAVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIK 167
Query: 211 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTA 270
+LP+LF+ +++ VR +K + +E+ RWI +D ++ L + + KELE E V + +A
Sbjct: 168 VLPKLFESREKAVRDEAKLIAVEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKLPTSA 225
Query: 271 -RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGF 329
RPTR +R++Q+ E E G D P+ID YEL++ V+IL+ L K F
Sbjct: 226 PRPTRFLRSQQELEAKLEQQQSAGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKD-F 284
Query: 330 WEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAI 388
++ ++A KW ERK+A+ + L ++ GD+ ++ + LKK++ D N+ + A + +
Sbjct: 285 YDKIEAKKWQERKEALESVEVLIKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCL 344
Query: 389 GNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVK 448
LA GLR F + V ++L + + A+ L ++ EDV
Sbjct: 345 TGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVL 402
Query: 449 TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSV 507
+ NK P ++ T ++ + + + K + K + ++ +ND PEVRDAAF
Sbjct: 403 AVMDNKNPTIKQQTSLFIARSFRHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEA 462
Query: 508 LAAIAKSVGMRPLERSIEKLDDVRRNKL---SEMIAGSGGDVATGTSSARVQTSGGSVPS 564
L K VG + + + +D ++ +K+ SE + G A G ++ + + +P
Sbjct: 463 LGTALKVVGEKAVNPFLADVDKLKLDKIKECSEKVELIHGKKA-GLAADKKEFK--PLPG 519
Query: 565 VEASESSFVRKSAASMLSGKR-PVSAAPASKKGGPVKPS--AKKDGSGKQETS--KLTEA 619
A+ + K + + K P+ APA+K GGP K A G+G T K E
Sbjct: 520 RTAASGAAGDKDTKDISAPKPGPLKKAPAAKAGGPPKKGKPAAPGGAGNTGTKNKKGLET 579
Query: 620 PEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVE 679
E VEP E+S+E E + +++P + L S+ WKERL + ++ VE + + +
Sbjct: 580 KEIVEP-ELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQ 638
Query: 680 ILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKTRA 739
LVR++ PGW E N +A F K + L G+ +++ D+K
Sbjct: 639 ALVRMLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKIGDVKCGN 697
Query: 740 HAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 799
+A + +T +EA + E++ + KNPK SE + W+ +A+++FG S L +K I
Sbjct: 698 NAKEAMTAIAEACMLPWTAEQVVSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFI 757
Query: 800 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 859
K T L ++ A R A I LLG ++ +VGP ++ F D KPALLS +DAE+EK +
Sbjct: 758 SNVK-TALAATNPAVRTAAITLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQS 816
Query: 860 TVVPKKTVRAXXXXXXX-----------XXXXXXXLPREDISGKFTPTLVKSLESPDWKV 908
P + + LPR +IS K T LV + +WK+
Sbjct: 817 PPAPTRGISKHSTSGTDEGEDGDEPDDGSNDVVDLLPRTEISDKITSELVSKIGDKNWKI 876
Query: 909 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 968
R E ++ V I+ +A K IQP GEL L+GRL DSNK LV TL L +A AMGP
Sbjct: 877 RKEGLDEVAGIINDA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPN 934
Query: 969 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEG 1028
+++ K + I+ LGD+K ++R L ++AW + + + + K
Sbjct: 935 IKQHVKNLGIPIITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFL 994
Query: 1029 RKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQETI 1087
R++L WL+++L L P L P + + D++ DVRK A+ + + G E +
Sbjct: 995 RQELLGWLAEKLPTLRSTPTDLILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKM 1054
Query: 1088 EK---NLKDIQGPALALILERIKLNGASQVSMGPTXXXXX---XXXXXXXNGVSKHGNRA 1141
K LK + +LE+ K+N ++ + PT S
Sbjct: 1055 AKATGKLKPTSKDQVLAMLEKAKVNMPAKPAP-PTKATSKPMGGSAPAKFQPASAPAEDC 1113
Query: 1142 ISSRVIPTKGARPESIMSVQDFAVQSQAL-LNVKDSNKEDRER 1183
ISS P + + A +Q + K S KED ++
Sbjct: 1114 ISSSTEPKPDPKKAKAPGLSSKAKSAQGKKMPSKTSLKEDEDK 1156
|
|
| UNIPROTKB|F1P0Y0 CKAP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1088 (388.1 bits), Expect = 3.1e-165, Sum P(4) = 3.1e-165
Identities = 311/1046 (29%), Positives = 502/1046 (47%)
Query: 92 LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEK 151
LG L KK V DSNA Q K L+A +AY++ A AG+ EV + K +PK K
Sbjct: 50 LG-LIKKFVTDSNAVAQLKGLEAALAYVENAHV-AGKTTGEVASGVVNKVFN-QPKARAK 106
Query: 152 AQAV--FMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRIL 209
V ++++E+E + + + I+ + +ALSEFG+KII K I+
Sbjct: 107 ELGVDICLMYIEIEKGEAVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPII 166
Query: 210 KMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT 269
K+LP+LF+ +++ VR +K L +E+ RWI +D ++ L + + KELE E V VS
Sbjct: 167 KVLPKLFESREKAVRDEAKLLAVEIYRWI-RDALRPPL-QNINSVQLKELEEEWVKVSSA 224
Query: 270 A-RPTRKIRAEQDKELGQELISEDVGPGPSEESTAD---VPPEIDEYELVDPVDILTPLE 325
A + TR +R++Q EL + + G +E D P++D YEL++ V+IL+ L
Sbjct: 225 APKQTRFLRSQQ--ELKAKFEQQQAAGGDGDEGDDDEEEAVPQVDAYELLEAVEILSKLP 282
Query: 326 KSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEA 384
K F+E ++A KW ERK+A+ + L ++ GD+ ++ + LKK++ D N+ + A
Sbjct: 283 KD-FYEKIEAKKWQERKEALEAVEVLVKNPKLESGDYADLVKVLKKVVGKDTNVMLVALA 341
Query: 385 IQAIGNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVV 444
+ + LA GLR F + V ++L + + A+ L ++
Sbjct: 342 AKCLAGLASGLRKKFGQYAGHVVPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NIS 399
Query: 445 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDA 503
EDV + NK P ++ T ++ + + + K + K + ++ +ND PEVRDA
Sbjct: 400 EDVLAVMDNKNPTIKQQTSLFIARSFRHCTPSTLPKSLLKPFCAALLKHINDSAPEVRDA 459
Query: 504 AFSVLAAIAKSVG---MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGG 560
F L K G + P ++KL R + +E + G + G
Sbjct: 460 GFEALGTALKVAGEKAVNPFLADVDKLKLDRIKECAEKVELVYGKKTGAAEKKEGKPVAG 519
Query: 561 SVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQET-SKLTEA 619
P++ S K AA+ G P AP K GGP K S +G +K +
Sbjct: 520 KAPALSGSAGDKEIKDAAAK-PG--PQKKAPVVKPGGPPKKSKPAAAAGTGGAGAKGKKG 576
Query: 620 PEDVE--PSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS 677
PE E SE+S+E E + +++PA + QL S WKERL ++ ++ VE ++ +
Sbjct: 577 PETKEIFESELSIEVCEEKAAAVLPASCIQQLDSGNWKERLASMEEFQKAVELMERSEMP 636
Query: 678 VEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKT 737
+ LVR++ PGW E N +A F K + L G+ ++V D+K
Sbjct: 637 CQALVRMLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQVVLDGLVDKVGDVKC 695
Query: 738 RAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD 797
++A + +T +EA + E++ + KNPK SE + W+ +A+++FG S L +K
Sbjct: 696 GSNAKEAMTAIAEACQLPWTAEQVVAMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKA 755
Query: 798 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF 857
I K T L ++ A R + I LLG ++ +VGP ++ F D KPALLS +DAE+EK
Sbjct: 756 FISNVK-TALAATNPAVRTSAITLLGVMYLYVGPPLRMFFEDEKPALLSQIDAEFEKMQG 814
Query: 858 EGTVVPKKTVRAXXXXXXXXXXXXXX----------LPREDISGKFTPTLVKSLESPDWK 907
+ P + + LPR DI K T LV + +WK
Sbjct: 815 QTAPAPTRGISRHSGGSGDDGEEEEQEDVGNDVVDLLPRTDIGDKITAELVAKIGDKNWK 874
Query: 908 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 967
+R E ++ V I+ +A K IQP GEL L+ RL DSNK LV TL L +A+AMGP
Sbjct: 875 IRKEGLDEVTSIINDA-KFIQP-NIGELPAALKSRLNDSNKILVQQTLSILQQLATAMGP 932
Query: 968 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAE 1027
+++ K + ++ LGD+K ++R L ++AW + + + + K
Sbjct: 933 NIKQHVKNLGIPVITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPF 992
Query: 1028 GRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQET 1086
R++L WL+ +L L P L P + + D++ DVRK A+ + + G E
Sbjct: 993 LRQELLGWLADKLPTLRSVPSDLLLCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGFEK 1052
Query: 1087 IEK---NLKDIQGPALALILERIKLN 1109
+ K LK + +LE+ K N
Sbjct: 1053 MAKATGKLKPTSKDQVLAMLEKAKAN 1078
|
|
| MGI|MGI:1923036 Ckap5 "cytoskeleton associated protein 5" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1069 (381.4 bits), Expect = 4.5e-165, Sum P(4) = 4.5e-165
Identities = 307/1051 (29%), Positives = 504/1051 (47%)
Query: 92 LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVE 150
LG L KK V DSNA VQ K L+A + Y++ A AG+ EV + +K + K E
Sbjct: 50 LG-LIKKFVTDSNAVVQLKGLEAALVYVENAHV-AGKTTGEVVSGVVSKVFNQPKAKAKE 107
Query: 151 KAQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILK 210
+ +++VE+E + + + I+ + +ALSEFG+KII K I+K
Sbjct: 108 LGIEICLMYVEIEKGESVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKIISLKPIIK 167
Query: 211 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGT 269
+LP+LF+ +D+ VR +K +E+ RW +D VK L + + KELE E V + +G
Sbjct: 168 VLPKLFESRDKAVRDEAKLFAIEIYRW-NRDAVKHTL-QNINSVQLKELEEEWVKLPTGA 225
Query: 270 ARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGF 329
+P+R +R++Q+ E E G D P++D YEL+D V+IL+ L K F
Sbjct: 226 PKPSRFLRSQQELEAKLEQQQSAGGDAEGGGDDGDEVPQVDAYELLDAVEILSKLPKD-F 284
Query: 330 WEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEAIQAI 388
++ ++A KW ERK+A+ + L ++ GD+ ++ + LKK++ D N+ + A + +
Sbjct: 285 YDKIEAKKWQERKEALEAVEVLVKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCL 344
Query: 389 GNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVK 448
LA GLR F + V ++L + + A+ L ++ EDV
Sbjct: 345 TGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQ--NISEDVL 402
Query: 449 TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDAAFSV 507
+ NK P ++ T ++ + + + K + K + ++ +ND PEVRDAAF
Sbjct: 403 AVMDNKNPTIKQQTSLFIARSFRHCTSSTLPKSLLKPFCAALLKHINDSAPEVRDAAFEA 462
Query: 508 LAAIAKSVG---MRPLERSIEKL--DDVRR-NKLSEMIAGSGGDVATGTSSARVQTSGGS 561
L K VG + P ++KL D ++ ++ E++ G +AT ++ G +
Sbjct: 463 LGTALKVVGEKSVNPFLADVDKLKLDRIKECSEKVELVHGKKSGLATEKKESK-PLPGRA 521
Query: 562 VPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP--SAKKDGSGKQETS--KLT 617
S A + K + G P+ P +K GGP K + GS T K
Sbjct: 522 AASGAAGDKD--TKDVSGPKPG--PLKKTPTAKAGGPSKKGKTTAPGGSASAGTKNKKGL 577
Query: 618 EAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS 677
E E VEP E+S+E E + +++P + L S+ WKERL + ++ VE ++ +
Sbjct: 578 ETKEIVEP-ELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMERTEMP 636
Query: 678 VEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADIKT 737
+ LV+++ PGW E N +A F K + L G+ +++ D+K
Sbjct: 637 CQALVKMLAKKPGWKETNFQVMQMKLHIVALIAQKGN-FSKTSAQIVLDGLVDKIGDVKC 695
Query: 738 RAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD 797
+A + +T +EA + E++ + KNPK SE + W+ +A+++FG S L +K
Sbjct: 696 GNNAKEAMTAIAEACMLPWTAEQVMSMAFSQKNPKNQSETLNWLSNAIKEFGFSELNVKA 755
Query: 798 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF 857
I K T L ++ A R + I LLG ++ +VGP ++ D KPALLS +DAE++K
Sbjct: 756 FISNVK-TALAATNPAVRTSAITLLGVMYLYVGPSLRMIFEDEKPALLSQIDAEFQKMQG 814
Query: 858 EGTVVPKKTVRAXXXXXXXXXXXXXX-----------LPREDISGKFTPTLVKSLESPDW 906
+ P + + LPR +IS K T LV + +W
Sbjct: 815 QSPPAPTRGIAKHSTSATDEGEDGEEPGEGGNDVVDLLPRIEISDKITSELVSKIGDKNW 874
Query: 907 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG 966
K+R E ++ V I+ EA K IQP GEL L+GRL DSNK LV TL L +A AMG
Sbjct: 875 KIRKEGLDEVAGIINEA-KFIQP-NIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMG 932
Query: 967 PAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGA 1026
+ + K + ++ LGD+K ++R L ++AW + + + + K
Sbjct: 933 ANIRQHVKNLGIPVITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENP 992
Query: 1027 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTDKSSDVRKAAEACIVEILRAGGQE 1085
R++L WL+++L L P L P + + D++ DVRK A+ + + G E
Sbjct: 993 FLRQELLGWLAEKLPTLRSTPTDLILCVPHLYSCLKDRNGDVRKKAQDALPFFMMHLGYE 1052
Query: 1086 TIEK---NLKDIQGPALALILERIKLNGASQ 1113
+ K LK + +LE+ K N S+
Sbjct: 1053 KMAKATGKLKPTSKDQVLAMLEKAKANMPSK 1083
|
|
| ZFIN|ZDB-GENE-051120-174 ckap5 "cytoskeleton associated protein 5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1041 (371.5 bits), Expect = 1.8e-157, Sum P(3) = 1.8e-157
Identities = 307/1026 (29%), Positives = 502/1026 (48%)
Query: 92 LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEK 151
LG L KK V +SNA Q K L+A +A+++ A AG+ EV + K +PK K
Sbjct: 49 LG-LIKKFVTESNAVAQLKGLEAALAFIENAHV-AGKTVGEVVSGVVNKVFN-QPKARAK 105
Query: 152 --AQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRIL 209
+ ++++E+E +V D + I+ + +AL EFG+KII K ++
Sbjct: 106 ELGTEICLMYIEIEKAEVVQDELIKGLDNKNPKIVVACIEALRKALCEFGSKIITLKPVV 165
Query: 210 KMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGT 269
K+LP+LF+ +++ VR +K L +E+ RWI +D ++ L + + KELE E V V T
Sbjct: 166 KVLPKLFESREKAVRDEAKLLAVEIYRWI-RDALRAPL-QNINSVQLKELEEEWVKVPAT 223
Query: 270 A-RPTRKIRAEQD---KELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLE 325
A + R +R++QD K Q+ D G EE V ++D YEL++ V+IL+ L
Sbjct: 224 APKQIRFLRSQQDLKAKFEQQQAAGGDEADGDDEEVAEAV--QVDAYELLEAVEILSKLP 281
Query: 326 KSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI-TDVNIAVAVEA 384
K F+E ++A KW ERK+A+ + L ++ GD+ ++ R LKK+I D N+ + A
Sbjct: 282 KD-FYEKIEAKKWQERKEALEAVEALTKNPKLESGDYGDLVRALKKVIGKDANVMLVSMA 340
Query: 385 IQAIGNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVV 444
+ + LA GLR F + V ++L + + A+ L ++
Sbjct: 341 AKCLAGLATGLRKKFGTYAGLVVPTILEKFKEKKPQVVQALQEAIDAVFLTTTLQ--NIS 398
Query: 445 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLNDGTPEVRDA 503
EDV + NK P ++ ++ + + + K V K + ++ +ND PEVRDA
Sbjct: 399 EDVLAVMDNKNPSIKQQASLFLARSFRHCTPSTLPKSVLKPFCAAFLKQVNDSAPEVRDA 458
Query: 504 AFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE------MIAGSGGDVATGTSSARVQT 557
AF L K +G + + + +D ++ +K+ E +I GG G + +
Sbjct: 459 AFEALGTAMKVIGEKAVNPFLTDVDKLKLDKIKECADKVELIGKKGG----GGGEKKERP 514
Query: 558 SGGSVPSVEA-SESSFVRKSAASMLSGKRPVSAAPASKKGGPVK-PSAKKDGSGKQETSK 615
+ + P VEA +++S K +A P AA KKG P PSAK + K
Sbjct: 515 AAKASPPVEAPAKTSGPPKKSA-------PAKAAGPPKKGKPAAAPSAK--------SKK 559
Query: 616 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 675
E E +E +E+S E E + +++PA + L SA WKERL ++ ++ VE + +
Sbjct: 560 APETKEIIE-TELSPEVCEEKAAAVLPASCMQLLDSANWKERLASMEEFQKAVEQMDKSE 618
Query: 676 QSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATATKFPKKCVVLCLLGISERVADI 735
+ LV+++ PGW E N L A +F K ++ L G+ +++ D+
Sbjct: 619 MPCQALVKMLAKKPGWKETNFQVMQMKLSIVG-LVAQKGQFSKTSALVVLDGLVDKIGDV 677
Query: 736 KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL 795
K +A + LT EA + E++ I KNPK +E + W+ +A+++FG + + +
Sbjct: 678 KCGGNAKEALTAIGEACSLPWTAEQVVSIAFAQKNPKNQAETLNWLANAMKEFGFAGINV 737
Query: 796 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 855
K I+ K T L ++ A R + I LLG ++ ++G ++ F D KPALLS +DAE+ K
Sbjct: 738 KGFINNVK-TALGATNPAVRTSAIALLGVMYLYMGAPLRMFFEDEKPALLSQIDAEFVKM 796
Query: 856 PFEGTVVP----KKT-------VRAXXXXXXXXXXXXXXLPREDISGKFTPTLVKSLESP 904
+ P KK V LPR DIS K T +V +
Sbjct: 797 QGQSPPAPTRGAKKAGAEEDGDVADEDEADGGAGDIMDMLPRTDISDKITSEMVSKISDK 856
Query: 905 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 964
+WK+R E ++ V ++ EA K IQ A GEL L+GRL DSNK LV TL L +A A
Sbjct: 857 NWKIRKEGLDEVAAVISEA-KFIQ-ANIGELPMALKGRLNDSNKLLVQQTLNILQQIAIA 914
Query: 965 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL 1024
MGP++++ K + ++ LGD+K ++R + L+AW+ + + + + K
Sbjct: 915 MGPSLKQHVKNLGIPVVTVLGDSKPNVRATAMATLNAWVEQTGMKEWLEGEDLSEELKKE 974
Query: 1025 GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGG 1083
R++L WLS++L L P L P + D+S DVRK A+ + + G
Sbjct: 975 NPFLRQELLGWLSEKLPTLRTVPADLMLCVPHLYTCLEDRSGDVRKKAQDALPTFMMHLG 1034
Query: 1084 QETIEK 1089
+ + K
Sbjct: 1035 FDKMTK 1040
|
|
| UNIPROTKB|F1M949 Ckap5 "Protein Ckap5" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 856 (306.4 bits), Expect = 4.8e-143, Sum P(3) = 4.8e-143
Identities = 244/834 (29%), Positives = 395/834 (47%)
Query: 304 DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFT 363
D P+ID YEL++ V+IL+ L K F++ ++A KW ERK+A+ + L + R+ GD+
Sbjct: 6 DEVPQIDAYELLEAVEILSKLPKD-FYDKIEAKKWQERKEALEAVEGLVRSPRLEAGDYA 64
Query: 364 EVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVA 422
E+ + LKK++ D N+ + A + + LA GLR F + V
Sbjct: 65 ELVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVV 124
Query: 423 ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-V 481
++L + + A+ L ++ EDV + NK P ++ T ++ + + + K +
Sbjct: 125 QALQEAIDAIFLTTTLQ--NISEDVLAVMDNKNPTIKQQTSLFIARSFRHCTSSTLPKSL 182
Query: 482 HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAG 541
K + ++ +ND PEVRDAAF L K VG + + + +D ++ +K+ E
Sbjct: 183 LKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKTVNPFLADVDKLKLDKIKE--CS 240
Query: 542 SGGDVATGTSSARVQTSGGSVPSV-EASESSFVRKSAASMLSGKRP--VSAAPASKKGGP 598
++ G S S P A+ S +SG +P + APA+K GGP
Sbjct: 241 EKVELVHGKKSGLAAEKKESKPLPGRAAASGAAGDKDTKDVSGPKPGPLKKAPATKAGGP 300
Query: 599 VKP--SAKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW 654
K + GS T K E E EP E+S+E E + +++P + L S+ W
Sbjct: 301 PKKGKTTAPGGSASSGTKNKKGLETKEIAEP-ELSIEVCEEKASAVLPPTCIQLLDSSNW 359
Query: 655 KERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAATAT 714
KERL + ++ VE ++ + + LV+++ PGW E N +A
Sbjct: 360 KERLACMEEFQKAVELMERSEMPCQALVKMLAKKPGWKETNFQVMQMKLHIVALIAQKGN 419
Query: 715 KFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 774
F K + L G+ +++ D+K +A + LT +EA + E++ + KNPK
Sbjct: 420 -FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNPKNQ 478
Query: 775 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 834
SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP ++
Sbjct: 479 SETLNWLSNAIKEFGFSELNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGPSLR 537
Query: 835 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXX-----------XXXXXXX 883
D KPALLS +DAE++K + P + +
Sbjct: 538 MIFEDEKPALLSQIDAEFQKMQGQSPPAPTRGISKHSTSGTDEGDDGDEPGDGSNDVVDL 597
Query: 884 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 943
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+GRL
Sbjct: 598 LPRVEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALKGRL 655
Query: 944 YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL 1003
DSNK LV TL L +A AMGP V++ K + IL LGD+K ++R L ++AW
Sbjct: 656 NDSNKILVQQTLNILQQLAVAMGPNVKQHVKNLGIPILTVLGDSKNNVRAAALATVNAWA 715
Query: 1004 AAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA-MTD 1062
+ + + + K R++L WL+++L L P L P + + D
Sbjct: 716 EQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPMLRSTPTDLILCVPHLYSCLED 775
Query: 1063 KSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLNGASQ 1113
++ DVRK A+ + + G E + K LK + +LE+ K N S+
Sbjct: 776 RNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKANMPSK 829
|
|
| DICTYBASE|DDB_G0268616 cepJ "centrosomal protein 224 kDa" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 2.4e-119, Sum P(5) = 2.4e-119
Identities = 142/526 (26%), Positives = 251/526 (47%)
Query: 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEK 151
GP FKK +AD N Q++AL+ L A++ D ++A + K RP+ EK
Sbjct: 49 GPQFKKILADINPMSQERALEPLSAFIDRCDC-VNKFAASYVGVLVEKLFASTRPRAKEK 107
Query: 152 AQAVFMLWVELEAVDVFLDVMEXXXXXXXXXXXXXXIDVMFQALSEFGAKIIPPKRILKM 211
+L +E ++ + ++ + + + QAL FG K IP K ILK
Sbjct: 108 TIECLLLTIEADSAEPVVEALLKGTSSTSPKILLASLAALTQALKTFGPKQIPVKLILKQ 167
Query: 212 LPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNV-SGTA 270
F+++D+ +R + L +E+ RWIGK + ++ E + K L+ + + + A
Sbjct: 168 FSPWFENRDKGIRDQASELFIEIYRWIGKALIP-LISEALTPIQLKALQDQFEKLPTDPA 226
Query: 271 RPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFW 330
P + R+E K L S+ + P +V EID Y L+ V+IL L S F+
Sbjct: 227 VPLKYTRSEAAKALANA--SKGIQAKP------EVVEEIDPYSLMTAVNILPKLT-SEFY 277
Query: 331 EGVKATKWSERKDAVAEL-TKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIG 389
EG++A KW ER + + +L T L +T +I DF+E+C+ LKK++ DVN+ + +A+ +IG
Sbjct: 278 EGLQAKKWQERSEQMDKLVTILTNTPKIETADFSELCKALKKILADVNVMIVQKAVVSIG 337
Query: 390 NLARGLRTHFSGSSRFXXXXXXXXXXXXXXTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 449
LA LR F+ + +V +S+ T+ ++ ++L D+++++
Sbjct: 338 LLADSLRGGFTSYVKPFITPILEKFKEKKTSVLQSVHTTMDSL-VGKSISLSDIIDELTA 396
Query: 450 SVKNKVPLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAFSVL 508
++++KVP ++ L ++ I + K A + KV K I ME LND +RD A
Sbjct: 397 TMQSKVPQIKQEVLVFICNSITNTKKPADITKVTKQLTKIFMEALNDTDSNIRDNASKAF 456
Query: 509 AAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEAS 568
AA+ +G R + + ++D ++ K+ + + VAT + + + ++
Sbjct: 457 AALGGIIGERAMTPYLNQIDPIKAKKIKDNMPA----VATPVTITPQPLAPVDLKDIDLP 512
Query: 569 ESSFVRKSAASMLSGKRPVSAAPASKKGG----PVKPSAKKDGSGK 610
SS +K AA+ + K + P + P PS+ D K
Sbjct: 513 VSSSNKKPAAATGNSKSSSTTTPTGRSSNSSPLPPPPSSSDDIKNK 558
|
|
| UNIPROTKB|F1SIB5 F1SIB5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 2.6e-113, Sum P(3) = 2.6e-113
Identities = 167/533 (31%), Positives = 258/533 (48%)
Query: 596 GGPVKPS--AKKDGSGKQETS--KLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 651
GGP K A + G+G T K E E VEP E+S+E E + +++PA + L S
Sbjct: 2 GGPPKKGKPAAQGGTGSTGTKNKKGLETKEIVEP-ELSIEVCEEKASAVLPAPCIQLLDS 60
Query: 652 AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNXXXXXXXXXXXNYLAA 711
+ WKERL + ++ VE + + + LVR++ PGW E N +A
Sbjct: 61 SNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQMKLHIVALIAQ 120
Query: 712 TATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNP 771
F K + L G+ +++ D+K +A + LT +EA + E++ + KNP
Sbjct: 121 KGN-FSKTSAQIVLDGLVDKIGDVKCGNNAKEALTAIAEACMLPWTAEQVMSMAFSQKNP 179
Query: 772 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGP 831
K SE + W+ +A+++FG S L +K I K T L ++ A R + I LLG ++ +VGP
Sbjct: 180 KNQSETLNWLSNAIKEFGFSGLNVKAFISNVK-TALAATNPAVRTSAITLLGVMYLYVGP 238
Query: 832 DIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAXXXXXXXXXXXXXX-------- 883
++ F D KPALLS +DAE+EK + P + +
Sbjct: 239 SLRMFFEDEKPALLSQIDAEFEKMQGQNPPAPTRGISKHSTSGTDEGEDGDEPDDGGNDV 298
Query: 884 ---LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 940
LPR +IS K T LV + +WK+R E ++ V I+ EA K IQP GEL L+
Sbjct: 299 VDLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINEA-KFIQP-NIGELPTALK 356
Query: 941 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 1000
GRL DSNK LV TL L +A AMGP +++ K + I+ LGD+K ++R L ++
Sbjct: 357 GRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIPIITVLGDSKNNVRAAALATVN 416
Query: 1001 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA- 1059
AW + + + + K R++L WL+++L L P L P +
Sbjct: 417 AWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDLILCVPHLYSC 476
Query: 1060 MTDKSSDVRKAAEACIVEILRAGGQETIEK---NLKDIQGPALALILERIKLN 1109
+ D++ DVRK A+ + + G E + K LK + +LE+ K N
Sbjct: 477 LEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAKAN 529
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94FN2 | MOR1_ARATH | No assigned EC number | 0.7462 | 0.9580 | 0.9939 | yes | no |
| Q5N749 | MOR1_ORYSJ | No assigned EC number | 0.7095 | 0.9634 | 0.9899 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2052 | |||
| pfam12348 | 228 | pfam12348, CLASP_N, CLASP N terminal | 0.001 | |
| pfam02985 | 31 | pfam02985, HEAT, HEAT repeat | 0.003 |
| >gnl|CDD|221541 pfam12348, CLASP_N, CLASP N terminal | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.001
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 30/187 (16%)
Query: 338 WSERKDAVAELTKL----ASTKRIAPGDFTEVCRTLK----KLITDVNIAVAVEAIQAIG 389
W R+ A+ +L + A P +F + L K ++ + ++ +
Sbjct: 21 WDAREKAIIKLRSIIKGNAPED--YPSEFLAGLKQLLEGILKALSSLRTTLSSTGCHLLK 78
Query: 390 NLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKT 449
LA L H + LLP LL+ + K ++++ Q + + V ++
Sbjct: 79 ELAIQLGHHLDPFAEILLPTLLKLCGDTKKIISQNANQAVADILSN-----VSYTPRLEL 133
Query: 450 SV-------KNKVPLVRSLTLNW-----VTFCIETSSKAAVLKVHKDYVPICMECLNDGT 497
KN P R + W + S + Y + L D
Sbjct: 134 QHISAALQDKNVQP--REYSAIWLKILLIRHGHHKSHIEHHGGL-DLYEKSLKKGLEDAN 190
Query: 498 PEVRDAA 504
P VR+ A
Sbjct: 191 PGVRETA 197
|
This region is found at the N terminal of CLIP-associated proteins (CLASPs). CLASPs are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules. In yeast, Drosophila, and Xenopus, a single CLASP orthologue is present. In mammals, a second paralogue (CLASP2) exists which has some functional overlap with CLASP1. Length = 228 |
| >gnl|CDD|202500 pfam02985, HEAT, HEAT repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.003
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 486 VPICMECLNDGTPEVRDAAFSVLAAIAKSV 515
+P+ +E LND PEVR+AA L A+A+ +
Sbjct: 2 LPLLLELLNDPDPEVREAAAEALGALAEVL 31
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2052 | |||
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| KOG1820 | 815 | consensus Microtubule-associated protein [Cytoskel | 100.0 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.97 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.95 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.84 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 99.84 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 99.73 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.71 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 99.68 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.64 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 99.59 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.49 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.47 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 99.47 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 99.42 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 99.38 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.3 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.22 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.15 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 99.1 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 99.01 | |
| KOG2956 | 516 | consensus CLIP-associating protein [General functi | 98.94 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.86 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 98.82 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.73 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.72 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.66 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 98.65 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 98.65 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.62 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 98.6 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.57 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.47 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 98.45 | |
| KOG2933 | 334 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| PRK09687 | 280 | putative lyase; Provisional | 98.3 | |
| KOG0211 | 759 | consensus Protein phosphatase 2A regulatory subuni | 98.25 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.85 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.56 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 97.56 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.51 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 97.42 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.4 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 97.37 | |
| KOG1943 | 1133 | consensus Beta-tubulin folding cofactor D [Posttra | 97.33 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 97.25 | |
| KOG1060 | 968 | consensus Vesicle coat complex AP-3, beta subunit | 97.14 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 97.02 | |
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.99 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 96.97 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.86 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.83 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 96.8 | |
| KOG1020 | 1692 | consensus Sister chromatid cohesion protein SCC2/N | 96.78 | |
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.64 | |
| KOG0166 | 514 | consensus Karyopherin (importin) alpha [Intracellu | 96.62 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 96.61 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 96.49 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 96.44 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 96.33 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 96.32 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 96.32 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 96.21 | |
| KOG2259 | 823 | consensus Uncharacterized conserved protein [Funct | 96.19 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 96.17 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.11 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 96.1 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 96.08 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 96.06 | |
| KOG2032 | 533 | consensus Uncharacterized conserved protein [Funct | 95.97 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.96 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 95.94 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 95.82 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 95.77 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 95.75 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 95.63 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 95.6 | |
| KOG1059 | 877 | consensus Vesicle coat complex AP-3, delta subunit | 95.58 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 95.56 | |
| KOG1061 | 734 | consensus Vesicle coat complex AP-1/AP-2/AP-4, bet | 95.45 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 95.3 | |
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 95.19 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 95.12 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 95.09 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 95.06 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 94.85 | |
| KOG1058 | 948 | consensus Vesicle coat complex COPI, beta subunit | 94.68 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 94.62 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.53 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 94.47 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.19 | |
| KOG4535 | 728 | consensus HEAT and armadillo repeat-containing pro | 94.17 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 94.01 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 93.79 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 93.77 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 93.77 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 93.67 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 93.59 | |
| PF14500 | 262 | MMS19_N: Dos2-interacting transcription regulator | 93.43 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 93.36 | |
| KOG4524 | 1014 | consensus Uncharacterized conserved protein [Funct | 93.15 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 92.89 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 92.89 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 92.6 | |
| KOG2025 | 892 | consensus Chromosome condensation complex Condensi | 92.56 | |
| PF12231 | 372 | Rif1_N: Rap1-interacting factor 1 N terminal; Inte | 92.36 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 92.33 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 92.3 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 92.25 | |
| KOG1991 | 1010 | consensus Nuclear transport receptor RANBP7/RANBP8 | 92.0 | |
| KOG1077 | 938 | consensus Vesicle coat complex AP-2, alpha subunit | 91.97 | |
| KOG1967 | 1030 | consensus DNA repair/transcription protein Mms19 [ | 91.93 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 91.86 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 91.86 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 91.82 | |
| smart00288 | 133 | VHS Domain present in VPS-27, Hrs and STAM. Unpubl | 91.62 | |
| PF10274 | 183 | ParcG: Parkin co-regulated protein; InterPro: IPR0 | 91.19 | |
| KOG2160 | 342 | consensus Armadillo/beta-catenin-like repeat-conta | 91.08 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 91.01 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 90.9 | |
| KOG0413 | 1529 | consensus Uncharacterized conserved protein relate | 90.04 | |
| KOG0168 | 1051 | consensus Putative ubiquitin fusion degradation pr | 90.0 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 89.74 | |
| cd03565 | 141 | VHS_Tom1 VHS domain family, Tom1 subfamily; The VH | 89.58 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 89.49 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 88.88 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 88.84 | |
| cd03568 | 144 | VHS_STAM VHS domain family, STAM subfamily; member | 88.7 | |
| KOG1087 | 470 | consensus Cytosolic sorting protein GGA2/TOM1 [Int | 88.64 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 88.25 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 88.02 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 87.81 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 87.61 | |
| KOG1243 | 690 | consensus Protein kinase [General function predict | 86.9 | |
| KOG1525 | 1266 | consensus Sister chromatid cohesion complex Cohesi | 86.8 | |
| KOG0946 | 970 | consensus ER-Golgi vesicle-tethering protein p115 | 86.41 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 86.34 | |
| KOG4224 | 550 | consensus Armadillo repeat protein VAC8 required f | 85.98 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 85.78 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 84.7 | |
| cd00197 | 115 | VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil | 84.65 | |
| PF00790 | 140 | VHS: VHS domain; InterPro: IPR002014 The VHS domai | 84.52 | |
| COG5218 | 885 | YCG1 Chromosome condensation complex Condensin, su | 84.13 | |
| PF04118 | 307 | Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do | 83.24 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 83.2 | |
| KOG0414 | 1251 | consensus Chromosome condensation complex Condensi | 82.93 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 82.9 | |
| PF08623 | 169 | TIP120: TATA-binding protein interacting (TIP20); | 82.81 | |
| KOG1949 | 1005 | consensus Uncharacterized conserved protein [Funct | 82.76 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 82.68 | |
| cd03567 | 139 | VHS_GGA VHS domain family, GGA subfamily; GGA (Gol | 82.45 | |
| KOG2022 | 982 | consensus Nuclear transport receptor LGL2 (importi | 82.33 | |
| PLN03076 | 1780 | ARF guanine nucleotide exchange factor (ARF-GEF); | 82.2 | |
| cd03572 | 122 | ENTH_epsin_related ENTH domain, Epsin Related fami | 82.2 | |
| KOG2549 | 576 | consensus Transcription initiation factor TFIID, s | 81.99 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 81.93 | |
| cd03561 | 133 | VHS VHS domain family; The VHS domain is present i | 81.64 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 81.37 | |
| PF13001 | 501 | Ecm29: Proteasome stabiliser; InterPro: IPR024372 | 81.34 | |
| cd03569 | 142 | VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s | 81.29 | |
| KOG4653 | 982 | consensus Uncharacterized conserved protein [Funct | 80.97 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 80.86 | |
| KOG2149 | 393 | consensus Uncharacterized conserved protein [Funct | 80.68 | |
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 80.51 | |
| PF11640 | 155 | TAN: Telomere-length maintenance and DNA damage re | 80.36 | |
| KOG0803 | 1312 | consensus Predicted E3 ubiquitin ligase [Posttrans | 80.35 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 80.14 | |
| KOG3961 | 262 | consensus Uncharacterized conserved protein [Funct | 80.11 | |
| KOG1078 | 865 | consensus Vesicle coat complex COPI, gamma subunit | 80.1 | |
| PF10521 | 282 | DUF2454: Protein of unknown function (DUF2454); In | 80.07 |
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-52 Score=535.29 Aligned_cols=744 Identities=25% Similarity=0.298 Sum_probs=569.5
Q ss_pred HhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHh-cCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHH
Q 000146 647 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVC-MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCL 725 (2052)
Q Consensus 647 ~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~-~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il 725 (2052)
..+.++.|+.|.++...+...+......+.....+++... ..++|+..|++|..-.+.++..-..+
T Consensus 12 ~~l~~~~w~~~~~~~~ql~~~~~~~~~~~a~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~~------------- 78 (815)
T KOG1820|consen 12 SELCSQSWKNRLEAWKQLLTDSNVGAQEQAAALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRVN------------- 78 (815)
T ss_pred hhhhhhhhhhhHHHHHHHhhhcchhhhHhHHHHHHHHHhhcchhhhhccceeeccchhhhccccccc-------------
Confidence 3478889999999999999888775444333344444432 22457778877766555554422111
Q ss_pred HHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhh
Q 000146 726 LGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDT 805 (2052)
Q Consensus 726 ~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~ 805 (2052)
+ ++...+++..+........+++.++.. ..-|.|+..+.++..+..++.+||...+.++.+++.+..+
T Consensus 79 ------~-----~~~~~~~~~~i~~~~~~~~~~e~~~~~-~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l 146 (815)
T KOG1820|consen 79 ------I-----RDTKTQSLLRIGKLEDIKEVVEAAKAL-LSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSL 146 (815)
T ss_pred ------c-----cCcchhHHHHHHHhhhhHHHHHHHHhh-ccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCccc
Confidence 1 112222233333333344455555554 4789999999999999999999999888888888776654
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhh-hccHHHHHHHHHHHhcCCCC----CCCCC-----------------
Q 000146 806 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLA-DVKPALLSALDAEYEKNPFE----GTVVP----------------- 863 (2052)
Q Consensus 806 gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~-~lkP~ll~~Le~efeK~~~~----~~p~p----------------- 863 (2052)
. +.+||.++.++++++|+|.|..+..++. .-.+.++..+...+.+.... ..+..
T Consensus 147 -~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~ 222 (815)
T KOG1820|consen 147 -A---DKNVRSEASKLLVEIYRWTGDASKPLLFKASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLE 222 (815)
T ss_pred -c---ccccchhhcccchhhhhhcCCCcCcccchhhhHHHHHHHHhhccccccccccccccccccccccccCCChhhccc
Confidence 3 8899999999999999999999887763 23344555555544433211 00000
Q ss_pred --ccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000146 864 --KKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 941 (2052)
Q Consensus 864 --~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~ 941 (2052)
.+..+...+......+..|++||+||++++++.|...+.+++||+|+||++.+..++++....+....++.+...++.
T Consensus 223 ~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki 302 (815)
T KOG1820|consen 223 KPERGLQRSKSGFTSPIDNFDLLPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKI 302 (815)
T ss_pred ccccccccccCCCCCCccccccCchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHH
Confidence 000000000000012345889999999999999999999999999999999999999975434666667888889999
Q ss_pred hhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhc
Q 000146 942 RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTD 1021 (2052)
Q Consensus 942 rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~ 1021 (2052)
++.|+|.+|+..|+.+|..||.+||..|.+|+..++|.|+.+++|+|+.+|+++..|+++|+..+++..+++.+.+++++
T Consensus 303 ~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~ 382 (815)
T KOG1820|consen 303 RLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILEALKG 382 (815)
T ss_pred hccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccChhHHHHHHHHHHHHhccCCCC----CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000146 1022 AKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1097 (2052)
Q Consensus 1022 ~k~np~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~ 1097 (2052)
+ ||..|.+++.|+.+++...... ..+..+++.+++..+|++.+||++|.+++.++|+++|++.+.+++.++++.
T Consensus 383 k--np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~ 460 (815)
T KOG1820|consen 383 K--NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQ 460 (815)
T ss_pred C--ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccc
Confidence 7 7999999999999999988742 345667777999999999999999999999999999999999999999986
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCccCCCCCCCCCCCcccccchhhhhhhhccc
Q 000146 1098 ALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVS-----KHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLN 1172 (2052)
Q Consensus 1098 ~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1172 (2052)
....+.+.+.+.-.....+.+++++..+.....+..++ .+.....++...|++.+...+ +...+. ....+.+
T Consensus 461 ~~~~~~E~~~p~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~-~~~~~~-~~~~~~~- 537 (815)
T KOG1820|consen 461 DIKPKEEKLKPLLHFLAAPKEKSSAPDPQVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANS-SRKIPE-AAEAPKL- 537 (815)
T ss_pred hhhhhhhhccccccccccCCCcCCCCCccccccceecccccccCCCCCCCccccCCCccccccc-ccCCcc-hhhcccc-
Confidence 45555554444211111222222222110000000000 000000000111111111000 000011 1111212
Q ss_pred cCCCchHHHh----hhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCcChhhhHHHH
Q 000146 1173 VKDSNKEDRE----RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVL 1248 (2052)
Q Consensus 1173 ~~~~~k~~R~----~~~~~k~~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~~i~~l 1248 (2052)
.+..+++|. +..+.+|++..+..+..+ ++...++......||+.||+.|.++++.++.....+..+..++.
T Consensus 538 -~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~ 612 (815)
T KOG1820|consen 538 -QLSLKEQRVVLGTRRKVSPKTVVAPVDDKKE----PSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQ 612 (815)
T ss_pred -ccccccchhhhhhhhccCccccccchhhhhc----ccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHH
Confidence 244566665 466788998887765544 37789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCCChHHHHHHHHHHHHHHhhcCCc
Q 000146 1249 DILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA 1328 (2052)
Q Consensus 1249 Dlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~ 1328 (2052)
|++++|+++||+|+|+.+..+.++++...|+......+.++..|...|.|++..+.|..++.+++.++.+.+....++.+
T Consensus 613 ~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~ 692 (815)
T KOG1820|consen 613 DLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSV 692 (815)
T ss_pred hhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchHHHHHHHhcCCChHHHHHHHHHHHHHHHHhChHHHHH
Q 000146 1329 TKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRY 1408 (2052)
Q Consensus 1329 skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~K~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~ 1408 (2052)
.+..|++.+++..||.++|.+|++.+..++..-|.....-.+.+..++-...++|..+|+++.+++...|.+.|+.+|++
T Consensus 693 ~~~~~~~~~~l~~~~~~~r~~~l~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 772 (815)
T KOG1820|consen 693 LMMVPSLREALELKEREIRSEELLVIKLLFSSEGTSILKSLRVLNIIALLVKASDGKSSSKVKKTSWKPFDFLPDPSWKI 772 (815)
T ss_pred cccchhhHhhccccchhhHHHHhhhhheeeccCCcchhhhHhhhhcccccccccchhhhhhhhcccccccccccchHHHH
Confidence 99999999999999999999999999999999998754445667999999999999999999999999999999999999
Q ss_pred hhcCCHHHHHHHHHHHHhhhh
Q 000146 1409 VGKLTDAQKSMLDDRFKWKVR 1429 (2052)
Q Consensus 1409 ~g~ls~~~~s~leer~kr~~~ 1429 (2052)
.+.+.+.++++++.+|++..+
T Consensus 773 ~~~~~~~~~s~~~~~~~~~~~ 793 (815)
T KOG1820|consen 773 SILQADTDKSRIEKMFPKERR 793 (815)
T ss_pred HHHhhHHHhhhHHHhcCcccc
Confidence 999999999999999998654
|
|
| >KOG1820 consensus Microtubule-associated protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=447.84 Aligned_cols=744 Identities=19% Similarity=0.223 Sum_probs=500.5
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhhhhHHH
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAG-RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAVDVFLD 170 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~-~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~~~v~e 170 (2052)
...++++++|+|+..|+.| .++..|....+.... .-..-.+-...++||. -+..+++...++.+.+...++...+++
T Consensus 23 ~~~~~ql~~~~~~~~~~~a-~a~~~~~~~s~~~~l~~a~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e 101 (815)
T KOG1820|consen 23 LEAWKQLLTDSNVGAQEQA-AALRLLRDASAISALLNAKNIQLLSFGLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVE 101 (815)
T ss_pred HHHHHHHhhhcchhhhHhH-HHHHHHHHhhcchhhhhccceeeccchhhhcccccccccCcchhHHHHHHHhhhhHHHHH
Confidence 8899999999999999999 999998888765222 1122233445678887 488899999999888877788899999
Q ss_pred HHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhh
Q 000146 171 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEK 250 (2052)
Q Consensus 171 ~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~ 250 (2052)
.+...+.-|.||.+++++..+..++.+||...++.+.+++.+..++ |++||.++..++++||||+|.. ++.+++..
T Consensus 102 ~~~~~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~~~~~~~~~~l~---D~nvr~~~~~l~v~i~r~~G~~-~~~~~~~~ 177 (815)
T KOG1820|consen 102 AAKALLSFKSPKKIAAAVAAVLSLVEEFGKPKVPSKAFIKHVGSLA---DKNVRSEASKLLVEIYRWTGDA-SKPLLFKA 177 (815)
T ss_pred HHHhhccccCchhHHHHHHHHHHHHHHhcCCCCccccccccCcccc---ccccchhhcccchhhhhhcCCC-cCcccchh
Confidence 9999999999999999999999999999999999999999999999 9999999999999999999974 65665544
Q ss_pred ChHHHHHHHHHHHHhccCC-CCCCccchhhhhHhhhhcccccCCCCCCCC--CCCCCCCCCCCCCCCCCcccccCcCccc
Q 000146 251 MRDTMKKELEVELVNVSGT-ARPTRKIRAEQDKELGQELISEDVGPGPSE--ESTADVPPEIDEYELVDPVDILTPLEKS 327 (2052)
Q Consensus 251 Lkp~qlkeLe~~f~~~~~~-~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iD~~dl~~~vdIl~kl~~~ 327 (2052)
-.+.+..++...+.+.... ....+..-+.+..........+..+..... .........+|.||+++++||+++++ .
T Consensus 178 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e~~~~~~~~~~~~~~~~~s~~d~~d~l~~~di~~ki~-~ 256 (815)
T KOG1820|consen 178 SAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKEQLEKPERGLQRSKSGFTSPIDNFDLLPRVDILSKIT-K 256 (815)
T ss_pred hhHHHHHHHHhhccccccccccccccccccccccccCCChhhcccccccccccccCCCCCCccccccCchhhhhhhcC-h
Confidence 4455555555444332111 111111111111000000000000000000 01111122379999999999999999 5
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCC--CCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKR--IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 405 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~k--i~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 405 (2052)
+|...+.++|||+|+|||+.+..++..++ +..+.++.+...++.+..|+|++|+..|++||+.||.+||..|.+|+..
T Consensus 257 ~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~ 336 (815)
T KOG1820|consen 257 NLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN 336 (815)
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence 89999999999999999999999886555 3334445555555566669999999999999999999999999999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh-HHHHhhhh
Q 000146 406 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA-AVLKVHKD 484 (2052)
Q Consensus 406 llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~-~l~~~l~~ 484 (2052)
++|.+|+++||+|+.+++++..|+++++.. +++.++.+.|..++++|||++|.+|..|+.+++...++. .....++.
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~ 414 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKT 414 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHH
Confidence 999999999999999999999999999984 899999999999999999999999999999999987633 33355789
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCC
Q 000146 485 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPS 564 (2052)
Q Consensus 485 l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~ 564 (2052)
++|.+++..+|++++||.+|.++++++++++|++.++.++..+++.-++.+.+.+...-.......++..++.+
T Consensus 415 l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~~~~~~~~~~E~~~p~~~~~~~~~~~~~a~~~------ 488 (815)
T KOG1820|consen 415 LVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDLDKQDIKPKEEKLKPLLHFLAAPKEKSSAPDP------ 488 (815)
T ss_pred HhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccchhhhhhhhccccccccccCCCcCCCCCc------
Confidence 99999999999999999999999999999999999999999999764445555443211000011111111100
Q ss_pred CCCCcchh-hhhhhccccCCCCC-CCCCCCCCCCCCCCCCCCCC--CCCCCcCC-cCCCCCC-----CCCCCCC-CHHHH
Q 000146 565 VEASESSF-VRKSAASMLSGKRP-VSAAPASKKGGPVKPSAKKD--GSGKQETS-KLTEAPE-----DVEPSEM-SLEEI 633 (2052)
Q Consensus 565 ~~~~~~~~-~~~~~~s~~~~~~P-~~~~~~s~k~~~~k~~~~~~--~~~~~~~s-~~~~~~~-----~~~~~~~-s~ee~ 633 (2052)
....+.. ++...+.......+ ++.+|....... ++...+. ..+....+ +...... .+..... ..++.
T Consensus 489 -~~~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~ 566 (815)
T KOG1820|consen 489 -QVEKLKKVVKVGLSNFSGLPKNSAASVPSKLSSAN-SSRKIPEAAEAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDK 566 (815)
T ss_pred -cccccceecccccccCCCCCCCccccCCCcccccc-cccCCcchhhccccccccccchhhhhhhhccCccccccchhhh
Confidence 0000000 00000000000000 000110000000 0000000 00000000 0000000 0000011 12444
Q ss_pred HHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHH
Q 000146 634 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT 712 (2052)
Q Consensus 634 e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~-~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~ 712 (2052)
.+.....++......+.+.+++.-.++++.+...-...... ......++.++.. +|.|+|..+....++++......
T Consensus 567 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~l--r~~~~~~~~~~~~~e~l~~~~~~ 644 (815)
T KOG1820|consen 567 KEPSKKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYTSIQDLLLEWLVL--RFEETNEALLGKVLELLIAEFQT 644 (815)
T ss_pred hcccccccchhhhhccCccchhhhhhhhhhhhhhhcccccccchHHhhhhHHHHH--HhhcccHHhhhhhhhhhhhhhhh
Confidence 43344556667788899999999999999988554442222 1223456666642 58899999999999888776654
Q ss_pred cCCC----chhhHHHHHHHHHHhhhchh--hhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Q 000146 713 ATKF----PKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 786 (2052)
Q Consensus 713 ~~~~----~~~~~~~il~~LveKlgd~K--~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~ 786 (2052)
.... .........+.+..+.|..+ .+..-..+.....++.+.......+.+.+ ..++-.+|.+++..+...+.
T Consensus 645 ~~l~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~ 723 (815)
T KOG1820|consen 645 LRLIEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREAL-ELKEREIRSEELLVIKLLFS 723 (815)
T ss_pred cchhhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhc-cccchhhHHHHhhhhheeec
Confidence 2110 11111111122333444432 33333344445555556555666677775 78888899999998888877
Q ss_pred HhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCC
Q 000146 787 DFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNP 856 (2052)
Q Consensus 787 ~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~ 856 (2052)
.-|...+............ ..+.+..+|..+..++...|.+.|+..........+.+...+++.|.+-.
T Consensus 724 ~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 792 (815)
T KOG1820|consen 724 SEGTSILKSLRVLNIIALL-VKASDGKSSSKVKKTSWKPFDFLPDPSWKISILQADTDKSRIEKMFPKER 792 (815)
T ss_pred cCCcchhhhHhhhhccccc-ccccchhhhhhhhcccccccccccchHHHHHHHhhHHHhhhHHHhcCccc
Confidence 7676543323333333333 67888999999999999999999999998888889999999999997653
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-26 Score=293.83 Aligned_cols=890 Identities=15% Similarity=0.141 Sum_probs=527.9
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhh--hhh--
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELE--AVD-- 166 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~--~r~~tk~~A~~~~l~~~e~~--~~~-- 166 (2052)
.+++.+++++.|+.-+|.|+-+|..+....+.....|..+ +..|+.+|++ +.+ +|-.|...+..|++.. +.+
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~-l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~ 197 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD-LLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEV 197 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH-HHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHH
Confidence 8889999999999999999999999999998866667744 4668899998 455 9999999888888763 121
Q ss_pred hHHHHHHHHh--------hccChhhHHHHHHHHHHHHHHhCCCCcC--hHHHHhhhhhhhCCC--ChhHHHHHHHHHHHH
Q 000146 167 VFLDVMEKAI--------KNKVAKAVVPAIDVMFQALSEFGAKIIP--PKRILKMLPELFDHQ--DQNVRASSKGLTLEL 234 (2052)
Q Consensus 167 ~v~e~Ll~~l--------~~K~PKvv~~~l~~L~~~l~~FG~~~i~--~k~il~~l~~ll~~~--dk~VR~~a~~l~vel 234 (2052)
.-+..++|++ ....-+....++.+|.+++...+. .+. +..+++...++.++. |..+|..|+++++.+
T Consensus 198 ~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk-~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~ 276 (1075)
T KOG2171|consen 198 DKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK-LLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSL 276 (1075)
T ss_pred HHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHH
Confidence 1223334432 333445667888888888877665 332 556788888888876 569999999999999
Q ss_pred HHhhCCchhhHH--HHhhChHHHHHHHHHHH--HhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCC
Q 000146 235 CRWIGKDPVKTI--LFEKMRDTMKKELEVEL--VNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEID 310 (2052)
Q Consensus 235 y~~lG~~~l~~~--L~~~Lkp~qlkeLe~~f--~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD 310 (2052)
.++. +.+.|.. +...|-++.++...+.- ++|. .++..+++..+....-+.+.+|
T Consensus 277 ~e~A-p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~---------------------~~d~~ded~~~~~~~~A~~~lD 334 (1075)
T KOG2171|consen 277 SEYA-PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS---------------------NEDDLDEDDEETPYRAAEQALD 334 (1075)
T ss_pred HHhh-HHHhhhchhhhccHHHHHHHhcCCcccchhhc---------------------cccccccccccCcHHHHHHHHH
Confidence 9994 3322211 11223333332111000 0000 0000000000000000112233
Q ss_pred CCC-CCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHH
Q 000146 311 EYE-LVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAI 388 (2052)
Q Consensus 311 ~~d-l~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l 388 (2052)
... -+++..|++.+- +.+...+.|.+|++|++||..|..++ ++++...+.+..|++++...++|+++.|+..||++|
T Consensus 335 rlA~~L~g~~v~p~~~-~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~nai 413 (1075)
T KOG2171|consen 335 RLALHLGGKQVLPPLF-EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAI 413 (1075)
T ss_pred HHHhcCChhhehHHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 332 356666665554 45667889999999999999999998 577777788999999999999999999999999999
Q ss_pred HHHHHHhhhcchhhhhhHH-HHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC------HHHHHHHHH-HHhhcCChHHH
Q 000146 389 GNLARGLRTHFSGSSRFLL-PVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN------LVDVVEDVK-TSVKNKVPLVR 459 (2052)
Q Consensus 389 ~~La~~L~~~f~~~~~~ll-p~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~------l~~ll~~l~-~~L~~Knp~vR 459 (2052)
|+|+..+.+.+++++...+ |.|+..+.+. ++.|..++..|+.+++.. |.. |+.+++..+ ..+++.++.+|
T Consensus 414 gQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~-~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~ 492 (1075)
T KOG2171|consen 414 GQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEE-CDKSILEPYLDGLMEKKLLLLLQSSKPYVQ 492 (1075)
T ss_pred HhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence 9999999999986655554 5666666665 478999999999999987 533 556666333 34457778999
Q ss_pred HHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhc----CCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHH
Q 000146 460 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 535 (2052)
Q Consensus 460 ~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~----Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI 535 (2052)
..+...++.+.... ...|.+|++.+||.|.++|. +...++|....+|++.++..+|.+.|.++...|=.
T Consensus 493 e~vvtaIasvA~AA-~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliq------ 565 (1075)
T KOG2171|consen 493 EQAVTAIASVADAA-QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQ------ 565 (1075)
T ss_pred HHHHHHHHHHHHHH-hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHH------
Confidence 99999999876654 44588999999999999994 45579999999999999999997667666554321
Q ss_pred HHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCc
Q 000146 536 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSK 615 (2052)
Q Consensus 536 ~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~ 615 (2052)
-.++.-++......|..+ +. -+.- +..-+-...-+.+--|. -.|+--+...
T Consensus 566 -ll~~~~~~~~~~dd~~~s-------y~--~~~w-armc~ilg~~F~p~L~~-Vmppl~~ta~----------------- 616 (1075)
T KOG2171|consen 566 -LLLELQGSDQDDDDPLRS-------YM--IAFW-ARMCRILGDDFAPFLPV-VMPPLLKTAR----------------- 616 (1075)
T ss_pred -HHHhhcccchhhccccHH-------HH--HHHH-HHHHHHhchhhHhHHHH-HhHHHHHhhc-----------------
Confidence 111111111000000000 00 0000 00000000000000000 0000000000
Q ss_pred CCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcC-CCCccc
Q 000146 616 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML-PGWSEK 694 (2052)
Q Consensus 616 ~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~-pg~~Ds 694 (2052)
.+ +...+++++.++...+..+++++..=.+.....|.+++++.. ..|++|+.|-... -+|-..
T Consensus 617 -~~-----p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~----------~A~~~Lv~~a~~lk~~F~pY 680 (1075)
T KOG2171|consen 617 -LD-----PDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKE----------TACEALGEYAKELKEAFAPY 680 (1075)
T ss_pred -cC-----CcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHH----------HHHHHHHHHHHhhhhhhhhH
Confidence 00 012334455555555666666655544447888888888765 3567777764321 245555
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHH
Q 000146 695 NVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 774 (2052)
Q Consensus 695 N~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~ 774 (2052)
-.+|...++-.+..+... -.+.++..++|.++...--.--+..+ .+..+ -.++++.++..+.....+.+.
T Consensus 681 ve~v~~l~v~~l~f~fhd---gVR~aa~~~~p~ll~~~~~A~~~~p~--~l~~l-----~~~~~~~l~~~l~~E~e~~vl 750 (1075)
T KOG2171|consen 681 VEQVVELMVPLLKFYFHD---GVRKAAAESMPQLLTCALKACQGGPE--YLKQL-----WEAIRPALIKALEEEPETEVL 750 (1075)
T ss_pred HHHHHHHHHHHHHhhhhh---HHHHHHHHHHHHHHHHHHHHhccChH--HHHHH-----HHHHHHHHHHHhhcCCcHHHH
Confidence 556666444333333221 13556677777766431100000000 11111 124555666666667888999
Q ss_pred HHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhh-HhhhhhccHH----H---HH
Q 000146 775 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI-KGFLADVKPA----L---LS 846 (2052)
Q Consensus 775 ~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l-~~~L~~lkP~----l---l~ 846 (2052)
.+.++.+.++|+.+|..++....+-..+... + ..+..-+..++... ..+.++.... . =+
T Consensus 751 ~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~-~------------~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~ 817 (1075)
T KOG2171|consen 751 SEILESFAECIEVMGDNCLNEDGLEALLGGL-L------------AQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDA 817 (1075)
T ss_pred HHHHHHHHHHHHhcCcccCCcHHHHHHHHHH-H------------HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhH
Confidence 9999999999999998777644333332211 0 00000011111110 0011110000 0 00
Q ss_pred HHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCC-ChHHHHHHHHHHHHHHHhccc
Q 000146 847 ALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANK 925 (2052)
Q Consensus 847 ~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~~ 925 (2052)
.|.+.+.++. .+.++ +. +.+..|- +..+-|.+...+.++ -|. |..|+..+.++++...+
T Consensus 818 ~ll~~i~~i~-------~~l~k-------~~--k~~f~p~---f~~~~p~iv~~l~~~~~~~-r~~av~~~~d~ie~~~~ 877 (1075)
T KOG2171|consen 818 YLLDAISDIL-------AALAK-------AL--KGSFLPF---FENFLPLIVKLLKSKKTVA-RQWAVCIFDDLIEGCGE 877 (1075)
T ss_pred HHHHHHHHHH-------HHHHH-------Hc--cccccHH---HHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHhccc
Confidence 0111111110 00000 00 0011111 223445566666665 577 99999999999987544
Q ss_pred cCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcH---HHHHHHHHHHHHH
Q 000146 926 RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK---HMRECTLTVLDAW 1002 (2052)
Q Consensus 926 ~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~---~VR~aa~~aL~~i 1002 (2052)
...+. +..+...+...+.|+..-|++.|.--+|.+|...|..+.+.+...+|.++..+..... .-+.+..+++.++
T Consensus 878 a~~~~-~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gai 956 (1075)
T KOG2171|consen 878 ASAKY-KERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAI 956 (1075)
T ss_pred ccchH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHH
Confidence 44443 4778889999999999999999999999999999999999999999999888875333 3444444555554
Q ss_pred H---Hhc----CchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC---C---CchhhhHHHHHhhcCCCCHHHHH
Q 000146 1003 L---AAV----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---F---PDAAHLLKPASIAMTDKSSDVRK 1069 (2052)
Q Consensus 1003 ~---~~~----~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~---~---~~~~~ll~pl~~~L~D~~~dVRk 1069 (2052)
+ .+. +.+.++|.+...|-... +-+.-..+..+|...+++..+ . ..+..++..+...+.+.+-.-|.
T Consensus 957 aki~~~~~~~i~vdqvl~~~l~~LPl~~-D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~~~~~~~~~~~~~~ 1035 (1075)
T KOG2171|consen 957 AKILLFNPNRIPVDQVLPAWLSWLPLKE-DKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVCAESLADKKIEPRS 1035 (1075)
T ss_pred HHHHHhCCccCcHHHHHHHHHHhCCCcc-chhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHHHhhhhccCCCccc
Confidence 4 443 35677777766664221 123345677888887776543 1 12233333344455555444444
Q ss_pred HHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHH
Q 000146 1070 AAEACIVEILRAG-GQETIEKNLKDIQGPALALILERI 1106 (2052)
Q Consensus 1070 aA~~~L~~l~~~~-G~e~~~~~l~~L~~~~~~~I~~~l 1106 (2052)
.+...+..+-... ..+.+...++.|++..+..+++.+
T Consensus 1036 ~~~r~~~ilkq~~~~~~~~~~~~~~L~~~~~~~lq~~~ 1073 (1075)
T KOG2171|consen 1036 TLARVIEILKQFLAPPSQFAALLATLPPDQQQALQAVL 1073 (1075)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHh
Confidence 4433333332222 346677788999999998888764
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-22 Score=251.27 Aligned_cols=869 Identities=17% Similarity=0.183 Sum_probs=522.1
Q ss_pred ChhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchh
Q 000146 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGP 94 (2052)
Q Consensus 15 pl~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (2052)
-|.|+.+++.=--|.-|-.+|.+.++... .+ ++.| ....+..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkds-------i~------Ld~d-------------------------Se~kvv~ 50 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDS-------IK------LDDD-------------------------SERKVVK 50 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhh-------hh------cccc-------------------------chhHHHH
Confidence 46677777777778878777777775310 00 0111 0012367
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCCChhHHHH-HHHHHHHHHhhh-h-----hhh
Q 000146 95 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEK-AQAVFMLWVELE-A-----VDV 167 (2052)
Q Consensus 95 l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~r~~tk~~-A~~~~l~~~e~~-~-----~~~ 167 (2052)
.+.|.+.|+|..||..|+.|+..++.+.+. ..++.++..|+.+.++++.+.|+. ++.+.+...++. . ...
T Consensus 51 ~lLklL~D~ngEVQnlAVKClg~lvsKvke---~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 51 MLLKLLEDKNGEVQNLAVKCLGPLVSKVKE---DQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHhhchH---HHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 778899999999999999999999977765 446677888888878888899985 888888888774 1 246
Q ss_pred HHHHHHHHhhccChh------hHHHHHHHHHHHHHHhCCCCcChH-HHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCC
Q 000146 168 FLDVMEKAIKNKVAK------AVVPAIDVMFQALSEFGAKIIPPK-RILKMLPELFDHQDQNVRASSKGLTLELCRWIGK 240 (2052)
Q Consensus 168 v~e~Ll~~l~~K~PK------vv~~~l~~L~~~l~~FG~~~i~~k-~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~ 240 (2052)
|+..+.+.+..-+-+ +...++.++.+.+.+||.-..+.. .+++.+..-++.....||+.|+-++..+..+++.
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~ 207 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR 207 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH
Confidence 778887777665554 889999999999999999665654 3788888889999999999999999998888875
Q ss_pred chhhHH---HHhhC----hHHHHHHHHHHHHhcc---C----CCC----CC--ccchhhh--hHhh--------------
Q 000146 241 DPVKTI---LFEKM----RDTMKKELEVELVNVS---G----TAR----PT--RKIRAEQ--DKEL-------------- 284 (2052)
Q Consensus 241 ~~l~~~---L~~~L----kp~qlkeLe~~f~~~~---~----~~~----p~--R~~rs~~--~~~~-------------- 284 (2052)
++.... |.++| ++.+.+.+-+.+..+. | ... |. .|..+.+ +.+.
T Consensus 208 ~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r 287 (1233)
T KOG1824|consen 208 DLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR 287 (1233)
T ss_pred HHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh
Confidence 433221 22333 2222332222222221 1 111 10 0110000 0000
Q ss_pred -hhcccc--------------cCCC-CCCCCCCCC---CCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHH
Q 000146 285 -GQELIS--------------EDVG-PGPSEESTA---DVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAV 345 (2052)
Q Consensus 285 -~~~~~~--------------~~~~-~~~~~~~~~---~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL 345 (2052)
+.+..+ =.++ ..+++++++ .++++.|.+ ++-|+..++-.||.|++|+
T Consensus 288 cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~--------------~deYsDDeD~SWkVRRaAa 353 (1233)
T KOG1824|consen 288 CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQ--------------DDEYSDDEDMSWKVRRAAA 353 (1233)
T ss_pred ChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchh--------------ccccccccchhHHHHHHHH
Confidence 000000 0000 000001100 001111110 2567778889999999999
Q ss_pred HHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhh----------------hcc-----hhhh
Q 000146 346 AELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR----------------THF-----SGSS 403 (2052)
Q Consensus 346 ~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~----------------~~f-----~~~~ 403 (2052)
+.+.+++ +...+.+.-|..+.+.|..+++|-.-+|....+++.-.+-+..+ ..| ...+
T Consensus 354 Kcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~ 433 (1233)
T KOG1824|consen 354 KCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQV 433 (1233)
T ss_pred HHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhh
Confidence 9999977 56666667788999999999996666667777666665554322 112 2335
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhcChhH
Q 000146 404 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAA 477 (2052)
Q Consensus 404 ~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~----~~~l~~ll~~l~~~L~~Kn--p~vR~~~l~~L~~~l~~~~~~~ 477 (2052)
..++..|-+.+++++...+..+..-|..++... ..++..+++.|.-.+.+|+ .+.|..++.|+..++..+++..
T Consensus 434 ~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~ 513 (1233)
T KOG1824|consen 434 PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEV 513 (1233)
T ss_pred HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhh
Confidence 667777888888888767788888888887651 2456778888888898887 5999999999999999999999
Q ss_pred HHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh------hHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCC
Q 000146 478 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR------PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 551 (2052)
Q Consensus 478 l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~------~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~ 551 (2052)
|.++++.+.|.+..++.|+.+.|-..|......+.+++... ...+++..+-....++++....
T Consensus 514 fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~----------- 582 (1233)
T KOG1824|consen 514 FHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDS----------- 582 (1233)
T ss_pred cccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccc-----------
Confidence 99999999999999999999999888888888888887532 1345555554444443322100
Q ss_pred CcccCCCCCCCCCCCCCcchhhhhhhccccC------C-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCcC-CcCCCC
Q 000146 552 SARVQTSGGSVPSVEASESSFVRKSAASMLS------G-----KRPVSAAPASKKGGPVKPSAKKDGSGKQET-SKLTEA 619 (2052)
Q Consensus 552 ~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~------~-----~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~-s~~~~~ 619 (2052)
.-.|+..+-+-.+ | .-|.. -+. =-..-+.-..+..+ +..+..
T Consensus 583 ------------------DqeVkeraIscmgq~i~~fgD~l~~eL~~~-L~i-------l~eRl~nEiTRl~AvkAlt~I 636 (1233)
T KOG1824|consen 583 ------------------DQEVKERAISCMGQIIANFGDFLGNELPRT-LPI-------LLERLGNEITRLTAVKALTLI 636 (1233)
T ss_pred ------------------cHHHHHHHHHHHHHHHHHHhhhhhhhhHHH-HHH-------HHHHHhchhHHHHHHHHHHHH
Confidence 0001100000000 0 00000 000 00000000000000 000000
Q ss_pred CCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCC-CcccHHHH
Q 000146 620 PEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQV 698 (2052)
Q Consensus 620 ~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg-~~DsN~qV 698 (2052)
.. .+..++.. ....+++ +++..-|.-.+-+-|++.+..+.++++...... ..+.+-..|...|+ +.|+..+|
T Consensus 637 a~--S~l~i~l~---~~l~~il-~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~-~~~~~e~vL~el~~Lisesdlhv 709 (1233)
T KOG1824|consen 637 AM--SPLDIDLS---PVLTEIL-PELASFLRKNQRALRLATLTALDKLVKNYSDSI-PAELLEAVLVELPPLISESDLHV 709 (1233)
T ss_pred Hh--ccceeehh---hhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHhhhhhhHHHHHH
Confidence 00 00001100 0000000 233333444445556666555555555532211 12233333444444 68999999
Q ss_pred HHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhh----ChhHHHHHHHHHH---------
Q 000146 699 QQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV----GPGFIFERLYKIM--------- 765 (2052)
Q Consensus 699 ~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~----~~~~Vl~~L~~~l--------- 765 (2052)
.+.++.++..++...+...-.....+++.++.-+..+-+...|..++..+.++. .+++=+..++..+
T Consensus 710 t~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~ 789 (1233)
T KOG1824|consen 710 TQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVT 789 (1233)
T ss_pred HHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccc
Confidence 999999999988875543334456667777766666655555555554444321 0110011111110
Q ss_pred ---------------------hhCC-----------------CHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCC
Q 000146 766 ---------------------KDHK-----------------NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGL 807 (2052)
Q Consensus 766 ---------------------~~~K-----------------npKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL 807 (2052)
..+| +-.++.-++..+.++=..++. .....+-..+.+. +
T Consensus 790 ~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~--s~~~e~~~~iiea-f 866 (1233)
T KOG1824|consen 790 DGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDL--SPQNELKDTIIEA-F 866 (1233)
T ss_pred cchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCC--CcchhhHHHHHHH-c
Confidence 0111 111222222222221111111 1223455556676 9
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccc----------cccccccCCCC
Q 000146 808 QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT----------VRASESTSSVS 877 (2052)
Q Consensus 808 ~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~----------~r~~~~~~~~~ 877 (2052)
++++.+|+.||.-.+|.+..-.-+.+.+| ++.+|+.+ |.|+ ..+++
T Consensus 867 ~sp~edvksAAs~ALGsl~vgnl~~yLpf-------il~qi~sq-----------pk~QyLLLhSlkevi~~~s------ 922 (1233)
T KOG1824|consen 867 NSPSEDVKSAASYALGSLAVGNLPKYLPF-------ILEQIESQ-----------PKRQYLLLHSLKEVIVSAS------ 922 (1233)
T ss_pred CCChHHHHHHHHHHhhhhhcCchHhHHHH-------HHHHHhcc-----------hHhHHHHHHHHHHHHHHhc------
Confidence 99999999999999998875322333333 23333321 1110 00000
Q ss_pred CCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHH
Q 000146 878 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLIT 957 (2052)
Q Consensus 878 ~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~ 957 (2052)
.+-..|. ..+|..-|++.++...--.|.-..|+|++++.. . -..|.+.|+.++.....+.+..++..
T Consensus 923 --vd~~~~~---v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~-----e---pesLlpkL~~~~~S~a~~~rs~vvsa 989 (1233)
T KOG1824|consen 923 --VDGLKPY---VEKIWALLFKHCECAEEGTRNVVAECLGKLVLI-----E---PESLLPKLKLLLRSEASNTRSSVVSA 989 (1233)
T ss_pred --cchhhhh---HHHHHHHHHHhcccchhhhHHHHHHHhhhHHhC-----C---hHHHHHHHHHHhcCCCcchhhhhhhe
Confidence 0001111 123555677778777777799999999998862 2 26799999999988888888888888
Q ss_pred HHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcC
Q 000146 958 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDA 1022 (2052)
Q Consensus 958 l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~ 1022 (2052)
+.....--...++.+.+..+..++..+.|....||+.|..+++..+.+-+ +..++|.+.+.|.++
T Consensus 990 vKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly~e 1056 (1233)
T KOG1824|consen 990 VKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLYSE 1056 (1233)
T ss_pred eeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHh
Confidence 88888888889999999999999999999999999999999999988765 567888888888754
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=216.99 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=147.8
Q ss_pred cCccchhhhhcccCChHHHHHHHHHHHHHhcCC--CCCCCChHHHH----HHHHHHhcCcCHHHHHHHHHHHHHHHHHhh
Q 000146 323 PLEKSGFWEGVKATKWSERKDAVAELTKLASTK--RIAPGDFTEVC----RTLKKLITDVNIAVAVEAIQAIGNLARGLR 396 (2052)
Q Consensus 323 kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~--ki~~~dy~~l~----~~L~k~l~D~N~~V~~~A~~~l~~La~~L~ 396 (2052)
.+. ..|.+...+.+|++|.+||+.|+.++... .....+|.+.+ ..+.+.+.|.|+.|+..||.+++.|+..++
T Consensus 7 ~~~-~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~ 85 (228)
T PF12348_consen 7 EIL-AALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG 85 (228)
T ss_dssp GS--TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 444 46777778999999999999999988433 22222333333 356677889999999999999999999999
Q ss_pred hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-
Q 000146 397 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV-VEDVKTSVKNKVPLVRSLTLNWVTFCIETSS- 474 (2052)
Q Consensus 397 ~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~l-l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~- 474 (2052)
..|++|+..++|.|+++++++|+.|++++..||.+++.+ |.....+ ++.+..+++||||++|.+++.|+..++..++
T Consensus 86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~-~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES-CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT-S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999997 4324666 7888889999999999999999999999988
Q ss_pred -hhHHHH--hhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHH
Q 000146 475 -KAAVLK--VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKL 535 (2052)
Q Consensus 475 -~~~l~~--~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI 535 (2052)
...+.. .++.+++.+.++++|++++||++|+++|+.+++++|++ ...++..||+..+|.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~-a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER-AESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH-H---------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh-hccchhcchhcccccC
Confidence 333432 35889999999999999999999999999999999988 4778899999888765
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.9e-15 Score=190.08 Aligned_cols=834 Identities=17% Similarity=0.183 Sum_probs=494.7
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh-hhhH
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFL 406 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~l 406 (2052)
+...+-+.+=..|++|=+.+..+...++ +...|..++. -.|+.|+..|+-.+..+..+.=+....- -..+
T Consensus 9 Ll~~l~spDn~vr~~Ae~~l~~~~~~~~--------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~si 80 (1075)
T KOG2171|consen 9 LLQQLLSPDNEVRRQAEEALETLAKTEP--------LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSI 80 (1075)
T ss_pred HHHHhcCCCchHHHHHHHHHHHhhcccc--------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 4445667777789999999988765433 5677777777 7788999999988888887755555432 3456
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh
Q 000146 407 LPVLLEKL-KEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 484 (2052)
Q Consensus 407 lp~LL~kl-kdkK~~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~ 484 (2052)
...||..+ +|..+.||.+...++-.++++ ....-+++++-+..+.++.|++.|+.++..|..+....+. .+.+|++.
T Consensus 81 ks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~-~~~~~~~~ 159 (1075)
T KOG2171|consen 81 KSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN-TLQPHLDD 159 (1075)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc-ccchhHHH
Confidence 66666665 899999999999999999987 1114578888899999999999999999999988776553 45678899
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC-ChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCC
Q 000146 485 YVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVP 563 (2052)
Q Consensus 485 l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G-e~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~ 563 (2052)
+.+.+.+||+|....||-+|.++++++..... +....+.+..+-|.-..-+.+.+.-
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~---------------------- 217 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQD---------------------- 217 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhc----------------------
Confidence 99999999999999999999999999998875 3322222222222111111111000
Q ss_pred CCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcH
Q 000146 564 SVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPA 643 (2052)
Q Consensus 564 ~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~ 643 (2052)
.+++.
T Consensus 218 -----------------------------------------------------------------~d~~~---------- 222 (1075)
T KOG2171|consen 218 -----------------------------------------------------------------GDDDA---------- 222 (1075)
T ss_pred -----------------------------------------------------------------cchHH----------
Confidence 00000
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCch---h
Q 000146 644 DTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK---K 719 (2052)
Q Consensus 644 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~-~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~---~ 719 (2052)
=..+++.|.+++...... .+..+.++.+....-+=++-+-.+.+.+|+++..+++..+...+ .
T Consensus 223 -------------a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~ 289 (1075)
T KOG2171|consen 223 -------------AKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL 289 (1075)
T ss_pred -------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh
Confidence 001122222222221111 01122222221111112455556888999999988887433221 1
Q ss_pred hHHHHHHHHHHh----hhch--------------hhhHHHHHHHHHHHhhhChhHHHHHHHHHH---hhCCCHHHHHHHH
Q 000146 720 CVVLCLLGISER----VADI--------------KTRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGI 778 (2052)
Q Consensus 720 ~~~~il~~LveK----lgd~--------------K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l---~~~KnpKv~~e~L 778 (2052)
....+++.++.- ..|. -....|.++|..++-..++..|+..+++.+ ..+.+|+-|-++|
T Consensus 290 ~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL 369 (1075)
T KOG2171|consen 290 LGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAAL 369 (1075)
T ss_pred hhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHH
Confidence 223333333322 2330 135678889999999999999888887764 5789999999999
Q ss_pred HHHHHHHHHhCCCCC-ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhh-hhccHHHHHHHHHHHhcCC
Q 000146 779 LWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFL-ADVKPALLSALDAEYEKNP 856 (2052)
Q Consensus 779 ~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L-~~lkP~ll~~Le~efeK~~ 856 (2052)
..|+.+.+..+-... .+..+++.+... |.|+.|.||.+|.+++|.|...+++.+..+. +.++|++...+
T Consensus 370 ~Als~i~EGc~~~m~~~l~~Il~~Vl~~-l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~l-------- 440 (1075)
T KOG2171|consen 370 LALSVIAEGCSDVMIGNLPKILPIVLNG-LNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALL-------- 440 (1075)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHhh-cCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHh--------
Confidence 999999874332111 456788888885 9999999999999999999988888776544 33444444333
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCC-ChHHHHHHHHHHHHHHHhcc-ccCCCCChhh
Q 000146 857 FEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEAN-KRIQPAGTGE 934 (2052)
Q Consensus 857 ~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~-~~I~~~~~~e 934 (2052)
++. +-++-..|...+-...+++. ..|.|. +..
T Consensus 441 ---------------------------------------------d~~~~~rV~ahAa~al~nf~E~~~~~~l~pY-Ld~ 474 (1075)
T KOG2171|consen 441 ---------------------------------------------DSTQNVRVQAHAAAALVNFSEECDKSILEPY-LDG 474 (1075)
T ss_pred ---------------------------------------------cccCchHHHHHHHHHHHHHHHhCcHHHHHHH-HHH
Confidence 332 23444455555555555443 334444 477
Q ss_pred HHH-HHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc----HHHHHHHHHHHHHHHHhcCch
Q 000146 935 LFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK----KHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 935 L~~-aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k----~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
|+. .|...+....+.|+..++..|+.+|.+.+..|.+|...++|.+.+.|...+ ..+|....+|++.+...+|=+
T Consensus 475 lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke 554 (1075)
T KOG2171|consen 475 LMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKE 554 (1075)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhh
Confidence 887 444444666788999999999999999999999999999999998886443 568899999999999999977
Q ss_pred hhHHHHHHH---Hhc----C-ccChhHHHHHHHHHHHHhccCCC--CCchhhhHHHHHhhc-CCCCHHHHHHHHHHHHHH
Q 000146 1010 KMVPYVTTA---LTD----A-KLGAEGRKDLFDWLSKQLTGLSG--FPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1010 ~ll~~l~~~---L~~----~-k~np~~R~~~l~~L~~~l~~~~~--~~~~~~ll~pl~~~L-~D~~~dVRkaA~~~L~~l 1078 (2052)
.+.|...+. +.. . ....-.|...+.+.++.-.-++. .+.+...++|+++.. .|.....
T Consensus 555 ~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~----------- 623 (1075)
T KOG2171|consen 555 KFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVAL----------- 623 (1075)
T ss_pred hhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccC-----------
Confidence 776633222 211 0 00111344443333322222222 122334445555433 2222110
Q ss_pred HHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccc
Q 000146 1079 LRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIM 1158 (2052)
Q Consensus 1079 ~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~ 1158 (2052)
++++..... ..++.-....+ +. + . .++ +-+.+. -
T Consensus 624 ---~d~~d~e~~-~~~~~~e~~~~-------~~---------~-------e---~~~-----------I~Tsvl-----~ 657 (1075)
T KOG2171|consen 624 ---SDEEDEEEE-QDLDGWEVVEL-------GD---------K-------E---NIG-----------IRTSVL-----D 657 (1075)
T ss_pred ---cCchhhhhc-cccccchhhcc-------CC---------c-------e---eee-----------eeehhH-----H
Confidence 022222211 11111000000 00 0 0 000 000000 0
Q ss_pred ccchhhhhhhhccccCCCchHHHhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhc-
Q 000146 1159 SVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKAL- 1237 (2052)
Q Consensus 1159 ~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l- 1237 (2052)
.+ +.....+--+ -...|-.|. .++++-...+ +....|.-.-..|..|++.|-..+
T Consensus 658 eK---~~A~~~Lv~~----------a~~lk~~F~----pYve~v~~l~-------v~~l~f~fhdgVR~aa~~~~p~ll~ 713 (1075)
T KOG2171|consen 658 EK---ETACEALGEY----------AKELKEAFA----PYVEQVVELM-------VPLLKFYFHDGVRKAAAESMPQLLT 713 (1075)
T ss_pred HH---HHHHHHHHHH----------HHhhhhhhh----hHHHHHHHHH-------HHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 00 0000000000 001122233 2222221111 223333333334555555554433
Q ss_pred ------CcChhhhHHHHHHHHHHHHHhh-cCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhh------
Q 000146 1238 ------PSIRKDIIEVLDILLRWFVLQF-CKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS------ 1304 (2052)
Q Consensus 1238 ------~~~~~~~i~~lDlllk~l~lr~-~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~------ 1304 (2052)
...+..+...++-+++.+..-+ .+.-+.|+..+|+-+...+..+... .|.+.+...++-.+..++
T Consensus 714 ~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~--~L~~~~~~~~~~~~~~~~l~~~~~ 791 (1075)
T KOG2171|consen 714 CALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDN--CLNEDGLEALLGGLLAQLLQHFKR 791 (1075)
T ss_pred HHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcc--cCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666655543 4568899999998888877776653 366666666665554333
Q ss_pred -CC---------ChHHHHHHHH----HHHHHHhh-------cCCc------cccHHHHHhhhcCCChhhHHHHHHHHHHH
Q 000146 1305 -GH---------NIEKVREKMR----ELTKQIVN-------FYSA------TKTLPYILEGLRSKNNRTRIECVDLVGFL 1357 (2052)
Q Consensus 1305 -Gd---------~k~~vr~~v~----~il~~~~~-------v~p~------skvf~~l~~gl~sKN~r~R~ecl~~l~~l 1357 (2052)
+| -.+..++.+. .++..++. .+-. ..++|++..-+.+++.--|+=.+..++.+
T Consensus 792 ~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ 871 (1075)
T KOG2171|consen 792 MQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDL 871 (1075)
T ss_pred HHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 22 1111222222 13333332 2221 25778877767666654488888889999
Q ss_pred HHhhCCCccccc--chHHHHHHHhcCCChHHHHHHHHHHHHHHHHhChHHHHHhhcCCHHHHHHH
Q 000146 1358 IDHHGAEISGQL--KSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSML 1420 (2052)
Q Consensus 1358 i~~~G~~~~~~~--K~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~~g~ls~~~~s~l 1420 (2052)
|+..|-.. -+. .-++.+...+.|.+++||++|-.-++.+-.+.|+.--..+..+.+..-.++
T Consensus 872 ie~~~~a~-~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~i 935 (1075)
T KOG2171|consen 872 IEGCGEAS-AKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVL 935 (1075)
T ss_pred HHhccccc-chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence 99888653 222 234999999999999999999999999999999883333333334333333
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-17 Score=191.48 Aligned_cols=208 Identities=21% Similarity=0.323 Sum_probs=143.6
Q ss_pred cccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh----hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCh
Q 000146 892 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT----GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 967 (2052)
Q Consensus 892 ~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~----~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~ 967 (2052)
.|...|.+...+.+|+.|.+|++.|+.++.+....-.+..| .++...+...+.|.|..|+..||.+++.++..+|.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 34555666668899999999999999999853111111112 23334667788999999999999999999999999
Q ss_pred hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhh-HHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC
Q 000146 968 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKM-VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG 1045 (2052)
Q Consensus 968 ~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-l~~l-l~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~ 1045 (2052)
.|++|+..++|.++++++|+++.||++|..||.+++++++ ...+ ++.+...+.++ ||.+|..++.|+...+..++.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSK--NPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHTT---
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999 5666 77888888877 799999999999999999982
Q ss_pred -CC------chhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHH
Q 000146 1046 -FP------DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALI 1102 (2052)
Q Consensus 1046 -~~------~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I 1102 (2052)
.. .+..+++.+.+++.|++++||++|..++..++.++|+.+ ...+..|+|..++.+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a-~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA-ESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh-ccchhcchhcccccC
Confidence 11 124577779999999999999999999999999999876 556789998888765
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-12 Score=157.74 Aligned_cols=703 Identities=18% Similarity=0.209 Sum_probs=425.4
Q ss_pred hHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhh-----hhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh----
Q 000146 94 PLFKKTVADSNAPVQDKALDALIAYLKAADADAG-----RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA---- 164 (2052)
Q Consensus 94 ~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~-----~~~~~vi~~LieK~L~~r~~tk~~A~~~~l~~~e~~~---- 164 (2052)
+.+-.++.......+|-|+.||....+-....+. +...-++|.+++=.-...|++|..|+.|+-.|+-+..
T Consensus 131 p~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~ 210 (885)
T KOG2023|consen 131 PQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALY 210 (885)
T ss_pred HHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHH
Confidence 3333444333336689999999887766543211 3344455655554222589999999999999886532
Q ss_pred --hhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhh-CC
Q 000146 165 --VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWI-GK 240 (2052)
Q Consensus 165 --~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~l-G~ 240 (2052)
.+..++.+...-++-+|.|+...+..+.-+++-.-.+.+| +..|++++...-.+.|.+|-=+|.++-..+...- -+
T Consensus 211 ~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~ 290 (885)
T KOG2023|consen 211 VHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICK 290 (885)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcH
Confidence 3566666655557788999999999998888665556665 7889999999999999999999999988877542 12
Q ss_pred chhhHHHHhhChHHHHHH-----HHHHH-Hhcc-CCCCC-------CccchhhhhHhhhhcccccCCCCCCCCCCCCCCC
Q 000146 241 DPVKTILFEKMRDTMKKE-----LEVEL-VNVS-GTARP-------TRKIRAEQDKELGQELISEDVGPGPSEESTADVP 306 (2052)
Q Consensus 241 ~~l~~~L~~~Lkp~qlke-----Le~~f-~~~~-~~~~p-------~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (2052)
.+++++| ++|-|+.+.- .+-.+ ++.+ ....| +|+-++... |.+... ++++
T Consensus 291 ~~L~p~l-~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~------------~~~~~~---~~eD 354 (885)
T KOG2023|consen 291 EVLQPYL-DKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEH------------GNGEDA---DDED 354 (885)
T ss_pred HHHHHHH-HHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhc------------cCcccc---cccc
Confidence 3456665 6777776652 11111 1111 11122 233333221 111110 0000
Q ss_pred CCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHH
Q 000146 307 PEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQ 386 (2052)
Q Consensus 307 ~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~ 386 (2052)
++.| ++.+.....+|.-|+-....|--+++. +...-+.-+++.|+..+...+=.|+..++-
T Consensus 355 dddD-----------------e~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~l~PlLk~~L~~~~W~vrEagvL 415 (885)
T KOG2023|consen 355 DDDD-----------------EDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPILLPLLKEHLSSEEWKVREAGVL 415 (885)
T ss_pred cccc-----------------ccccccccccccHhhccHHHHHHHHHh--hHHHHHHHHHHHHHHHcCcchhhhhhhhHH
Confidence 1111 111224457899999877777666542 111224567788888888777788999999
Q ss_pred HHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 000146 387 AIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 466 (2052)
Q Consensus 387 ~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L 466 (2052)
++|.+|+|--..|-+|...++|.|+..+.|||+-||.-. |.+|.+.-..+.
T Consensus 416 AlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsIT-----------CWTLsRys~wv~------------------ 466 (885)
T KOG2023|consen 416 ALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSIT-----------CWTLSRYSKWVV------------------ 466 (885)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeee-----------eeeHhhhhhhHh------------------
Confidence 999999999999999999999999999999999888533 544444333221
Q ss_pred HHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCC
Q 000146 467 TFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDV 546 (2052)
Q Consensus 467 ~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~ 546 (2052)
+... ..+++.++..+.+.+-|++..|.+||+.+++++-.-.|++ +-||++.+-..-...+..|-
T Consensus 467 ----~~~~----~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~e-LVp~l~~IL~~l~~af~kYQ------- 530 (885)
T KOG2023|consen 467 ----QDSR----DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEE-LVPYLEYILDQLVFAFGKYQ------- 530 (885)
T ss_pred ----cCCh----HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHh-------
Confidence 1111 1334666777888899999999999999999999888865 56676665433333322220
Q ss_pred CCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCC
Q 000146 547 ATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPS 626 (2052)
Q Consensus 547 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~ 626 (2052)
T Consensus 531 -------------------------------------------------------------------------------- 530 (885)
T KOG2023|consen 531 -------------------------------------------------------------------------------- 530 (885)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHH
Q 000146 627 EMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 706 (2052)
Q Consensus 627 ~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l 706 (2052)
++|-..=.+|+.
T Consensus 531 ------------------------~KNLlILYDAIg-------------------------------------------- 542 (885)
T KOG2023|consen 531 ------------------------KKNLLILYDAIG-------------------------------------------- 542 (885)
T ss_pred ------------------------hcceehHHHHHH--------------------------------------------
Confidence 000001111111
Q ss_pred HHHHHHcCC-Cc-hhhHHHHHHHHHHhhhc----hhhhHHHHHHHHHHHhhhChh------HHHHHHHHHHhhCCCHHHH
Q 000146 707 NYLAATATK-FP-KKCVVLCLLGISERVAD----IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVL 774 (2052)
Q Consensus 707 ~~l~~~~~~-~~-~~~~~~il~~LveKlgd----~K~r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l~~~KnpKv~ 774 (2052)
.+++..+. +. +.++..++|.|++|-.- .|--=.-.+||..++.+.+-. .|+++.++.+
T Consensus 543 -tlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il--------- 612 (885)
T KOG2023|consen 543 -TLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRIL--------- 612 (885)
T ss_pred -HHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHH---------
Confidence 12221111 11 33567778888877432 132233445666666655432 2333333322
Q ss_pred HHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhc
Q 000146 775 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 854 (2052)
Q Consensus 775 ~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK 854 (2052)
..+++.+...-...... .+=|+++ -.+..++.-|..-+|..+.
T Consensus 613 ~~t~q~~~~~~~~~~~~-~pdkdfi----------------I~sLDL~SGLaegLg~~ie-------------------- 655 (885)
T KOG2023|consen 613 QKTLQLLAKVQQDPTVE-APDKDFI----------------IVSLDLLSGLAEGLGSHIE-------------------- 655 (885)
T ss_pred HHHHHHHHhccCCcccc-CCCcceE----------------EEeHHHHhHHHHHhhhchH--------------------
Confidence 11111111111000000 0001110 0011111111111111111
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh
Q 000146 855 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 934 (2052)
Q Consensus 855 ~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~e 934 (2052)
.++.+.+ |..-++..+.|.--.+|+.+.-.++.+...+..++.|+. .+
T Consensus 656 ---------------------------~Lva~sn----l~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~-~~ 703 (885)
T KOG2023|consen 656 ---------------------------PLVAQSN----LLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNL-AD 703 (885)
T ss_pred ---------------------------HHhhhcc----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchH-HH
Confidence 1111112 344567778888889999999999999987778888886 88
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC-----
Q 000146 935 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH----- 1007 (2052)
Q Consensus 935 L~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k--~~VR~aa~~aL~~i~~~~~----- 1007 (2052)
++..|..-++-.|..+.-.|+-.+|+|+..+|.+..+|+..++-.++.-++-++ ..+-+-..-|++.+...++
T Consensus 704 fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllENtAITIGrLg~~~Pe~vAp 783 (885)
T KOG2023|consen 704 FLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLENTAITIGRLGYICPEEVAP 783 (885)
T ss_pred HHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHhhhhhhhhhhccCHHhcch
Confidence 999998888888999999999999999999999999999999988887776433 3455555556666655443
Q ss_pred -chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhh--hHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1008 -LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAH--LLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1008 -l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~--ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
++.++..-...|.+=. .-+.|..++.-+...+.-.+. ....+ ++--.+....+...++|..-.+.|-.+...+|.
T Consensus 784 ~l~~f~~pWc~sl~~i~-DneEK~sAFrG~c~mi~vNp~-~vv~~~~f~c~aiAsw~np~~~l~~~f~kiL~g~k~qvg~ 861 (885)
T KOG2023|consen 784 HLDSFMRPWCTSLRNID-DNEEKESAFRGLCNMINVNPS-GVVSSFIFICDAIASWSNPEDDLRDEFYKILQGFKNQVGK 861 (885)
T ss_pred hHHHHHHHHHHHhcccc-cchhHHHHHHHHHHheeeCch-hhhhhhHHHHHHHhcccChHHHHHHHHHHHHHHHHHHhhh
Confidence 2222222222333211 123466666666654432222 11222 222244556677799999999999999999999
Q ss_pred hHHHHHhccCChHHHHHHHHH
Q 000146 1085 ETIEKNLKDIQGPALALILER 1105 (2052)
Q Consensus 1085 e~~~~~l~~L~~~~~~~I~~~ 1105 (2052)
..-..+...++|..+..+...
T Consensus 862 ~nW~~~~~qf~P~~~erl~a~ 882 (885)
T KOG2023|consen 862 INWQRFSEQFPPPLKERLQAF 882 (885)
T ss_pred hhHHHHhhcCChhHHHHHHHH
Confidence 888888899999887766553
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-10 Score=143.18 Aligned_cols=517 Identities=16% Similarity=0.221 Sum_probs=314.0
Q ss_pred HHHHHHHHHhcCcCHH------HHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC
Q 000146 364 EVCRTLKKLITDVNIA------VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC 437 (2052)
Q Consensus 364 ~l~~~L~k~l~D~N~~------V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~ 437 (2052)
.+++.+...+.+.++. +...+|..++.+-..+|.-+-+++..++..++-.+.-....||.-+..+|..+..+ |
T Consensus 127 tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~-~ 205 (1233)
T KOG1824|consen 127 TVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASS-C 205 (1233)
T ss_pred HHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHh-c
Confidence 4555555555544444 66677777777777888777778888999999999999999999999999999887 4
Q ss_pred CC--HHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhh---cCCChHHHHHHHHHHHH
Q 000146 438 LN--LVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL---NDGTPEVRDAAFSVLAA 510 (2052)
Q Consensus 438 ~~--l~~ll~~l~~~L~~K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l---~Ds~~~VR~aA~~~l~~ 510 (2052)
.. +..+++++..+|.+. +..+|.. ...|+.+... ....+..+++.++|.+.... +..+.+.|+...++++.
T Consensus 206 ~~~ly~~li~~Ll~~L~~~~q~~~~rt~-Iq~l~~i~r~-ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~ 283 (1233)
T KOG1824|consen 206 NRDLYVELIEHLLKGLSNRTQMSATRTY-IQCLAAICRQ-AGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALES 283 (1233)
T ss_pred CHHHHHHHHHHHHhccCCCCchHHHHHH-HHHHHHHHHH-hcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 32 577888888888644 3344432 2233332222 22346677889999999988 88899999999999999
Q ss_pred HHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCC
Q 000146 511 IAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAA 590 (2052)
Q Consensus 511 l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~ 590 (2052)
|...... .+.++.+.+-..-.+. +.- .+ +- .+ ..+ +. . ..+
T Consensus 284 fl~rcp~-ei~p~~pei~~l~l~y----isY---DP--Ny----------~y-d~~--eD-----e-d~~---------- 324 (1233)
T KOG1824|consen 284 FLRRCPK-EILPHVPEIINLCLSY----ISY---DP--NY----------NY-DTE--ED-----E-DAM---------- 324 (1233)
T ss_pred HHHhChh-hhcccchHHHHHHHHH----hcc---CC--CC----------CC-CCc--cc-----h-hhh----------
Confidence 9988774 3677777654432222 211 00 00 00 000 00 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCC-CCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 000146 591 PASKKGGPVKPSAKKDGSGKQETSKLTEAPEDV-EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 669 (2052)
Q Consensus 591 ~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~-~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~ 669 (2052)
..+..+|. .+.++++|| +-.||.|-+|..-+...+.
T Consensus 325 -------------------------~~ed~eDde~~deYsDDe------------------D~SWkVRRaAaKcl~a~Is 361 (1233)
T KOG1824|consen 325 -------------------------FLEDEEDDEQDDEYSDDE------------------DMSWKVRRAAAKCLEAVIS 361 (1233)
T ss_pred -------------------------hhhccccchhcccccccc------------------chhHHHHHHHHHHHHHHHh
Confidence 00000000 011223322 2246666666555554432
Q ss_pred hcccc-------------------c-----hHHHHHHHHHhcCCCC----------------------------------
Q 000146 670 AVQNL-------------------D-----QSVEILVRLVCMLPGW---------------------------------- 691 (2052)
Q Consensus 670 ~~~~~-------------------~-----~~~~~Lv~~L~~~pg~---------------------------------- 691 (2052)
+-.+. + ......+..|...+.|
T Consensus 362 SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~ 441 (1233)
T KOG1824|consen 362 SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQ 441 (1233)
T ss_pred ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHH
Confidence 21000 0 0012223333332222
Q ss_pred ---cccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhch----hhhHHHHHHHHHHHhhhChhHH---HHHH
Q 000146 692 ---SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI----KTRAHAMKCLTTFSEAVGPGFI---FERL 761 (2052)
Q Consensus 692 ---~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~----K~r~~a~e~L~~l~E~~~~~~V---l~~L 761 (2052)
+++..+-.+..|..|..++..++.....+...++|+++-.+.|. ..+..+.-.|....-..+|+.. +..+
T Consensus 442 ~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~L 521 (1233)
T KOG1824|consen 442 KQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSAL 521 (1233)
T ss_pred HHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhh
Confidence 22222233456666666666666666667788889988888883 2333343344444434444321 1222
Q ss_pred H---HHHhhCCCHHHHHHHHHHHHHHHHHhCCC----CCC----hHhHHHHHHh-hCCCCCcHHHHHHHHHHHHHHHHhh
Q 000146 762 Y---KIMKDHKNPKVLSEGILWMVSAVEDFGVS----HLK----LKDLIDFCKD-TGLQSSAAATRNATIKLLGALHKFV 829 (2052)
Q Consensus 762 ~---~~l~~~KnpKv~~e~L~~L~~~i~~fG~~----~l~----~k~li~~l~~-~gL~~~n~~VR~aA~~ll~~Ly~~~ 829 (2052)
. -......=+|+-.|+|....++++-.-.. .++ ++.++....+ +-..+.+.+||..|+.|++.+-..+
T Consensus 522 s~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~f 601 (1233)
T KOG1824|consen 522 SPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANF 601 (1233)
T ss_pred hhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 2 22245778999999999988888743221 233 4445444322 2246889999999999999999998
Q ss_pred ChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHH
Q 000146 830 GPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 909 (2052)
Q Consensus 830 G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R 909 (2052)
|+.+..++...-|.+.+.|..| -+|
T Consensus 602 gD~l~~eL~~~L~il~eRl~nE-------------------------------------------------------iTR 626 (1233)
T KOG1824|consen 602 GDFLGNELPRTLPILLERLGNE-------------------------------------------------------ITR 626 (1233)
T ss_pred hhhhhhhhHHHHHHHHHHHhch-------------------------------------------------------hHH
Confidence 8665555433333333222222 136
Q ss_pred HHHHHHHHHHHHhccccCC--CCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCC
Q 000146 910 LESIEAVNKILEEANKRIQ--PAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGD 986 (2052)
Q Consensus 910 ~eale~L~~ll~~a~~~I~--~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~-~~~llp~ll~~l~D 986 (2052)
..|+.++.-|... .-.|. +. ++++...|..-+.-.+..++..++..+..+.+..+..+..+ +..++-.+...+.+
T Consensus 627 l~AvkAlt~Ia~S-~l~i~l~~~-l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise 704 (1233)
T KOG1824|consen 627 LTAVKALTLIAMS-PLDIDLSPV-LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE 704 (1233)
T ss_pred HHHHHHHHHHHhc-cceeehhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH
Confidence 6666666666542 23332 22 46777777777777778888999999999999998888766 55577788888899
Q ss_pred CcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC
Q 000146 987 NKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA 1022 (2052)
Q Consensus 987 ~k~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~ 1022 (2052)
+...+-+-|..+|.+++..-+ ...+++.+...++++
T Consensus 705 sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 705 SDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence 999999999999999887643 345777777777754
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-13 Score=171.96 Aligned_cols=514 Identities=18% Similarity=0.178 Sum_probs=337.0
Q ss_pred hccChhhHHHHHHHHHHHHHHhCCCCc-ChHHHHhhhhhhhCC-CChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHH
Q 000146 177 KNKVAKAVVPAIDVMFQALSEFGAKII-PPKRILKMLPELFDH-QDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDT 254 (2052)
Q Consensus 177 ~~K~PKvv~~~l~~L~~~l~~FG~~~i-~~k~il~~l~~ll~~-~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~ 254 (2052)
.+..+.+....+.+...++.+.|.+.+ .++++.. .-++| .+.++|+.-..+...+.+|+.. .+.++.
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v~~l~~~~~---~~l~~~~~~~~~~~~~v~~~~~a~~~~~--------~d~~~~ 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNVLNLKPCFE---QRLNSLHNDNLRNNVVVLEGTLAFHLQI--------VDPRPI 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHHHHHHHHHH---HHhccchhHHHhhhhHHHHHHHHHhccc--------cCcchh
Confidence 667778888888999999999999543 3444433 33332 3789999999998888888742 122322
Q ss_pred HHHHHHHHHHhccCCCCCCccchhhhhHhhhhc-ccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhc
Q 000146 255 MKKELEVELVNVSGTARPTRKIRAEQDKELGQE-LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV 333 (2052)
Q Consensus 255 qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l 333 (2052)
.-++..|+... +|.... | .+-.. -++-... .+..++..++ +...+.+
T Consensus 96 --~~~~~~~~~~~---tps~~~---q--~~~~~~l~~~~~~-----------------~~~~~~~~~l-----~~l~~ll 143 (569)
T KOG1242|consen 96 --SIIEILLEELD---TPSKSV---Q--RAVSTCLPPLVVL-----------------SKGLSGEYVL-----ELLLELL 143 (569)
T ss_pred --HHHHHHHHhcC---CCcHHH---H--HHHHHHhhhHHHH-----------------hhccCHHHHH-----HHHHHHh
Confidence 22444444432 222111 1 10000 0000000 0000111111 2456667
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHH-HHHHHHHHHHHhhhcchhhhhhHHHHHHH
Q 000146 334 KATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVE-AIQAIGNLARGLRTHFSGSSRFLLPVLLE 412 (2052)
Q Consensus 334 ~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~-A~~~l~~La~~L~~~f~~~~~~llp~LL~ 412 (2052)
+..+..+|+.|...+..+.++.-+....-..++..|.+.+.|.+....++ +..+.......|++.|+||...++|.+|.
T Consensus 144 ~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~ 223 (569)
T KOG1242|consen 144 TSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILT 223 (569)
T ss_pred ccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHH
Confidence 88999999999999999987766665555678999999999998888885 77888888899999999999999999999
Q ss_pred HhccCcHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHH
Q 000146 413 KLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 491 (2052)
Q Consensus 413 klkdkK~~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k 491 (2052)
+++|+-+.||+++..|.++++.. ....+..+++.++.++....|+.|..++..+. ++..+.+.++..+++.++|.+.+
T Consensus 224 ~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg-~m~~~ap~qLs~~lp~iiP~lse 302 (569)
T KOG1242|consen 224 NFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLG-AMADCAPKQLSLCLPDLIPVLSE 302 (569)
T ss_pred HhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHH-HHHHhchHHHHHHHhHhhHHHHH
Confidence 99999999999999999999985 22457889999988888779999999999999 67777888888999999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcch
Q 000146 492 CLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 571 (2052)
Q Consensus 492 ~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 571 (2052)
.|+|++++||++|.+|+-.++.++.+..+.++++.|- +++.- |+..++ .
T Consensus 303 vl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Ll--------d~l~d---------p~~~~~--------------e 351 (569)
T KOG1242|consen 303 VLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLL--------DALAD---------PSCYTP--------------E 351 (569)
T ss_pred HHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--------HHhcC---------cccchH--------------H
Confidence 9999999999999999999999999988888777652 22210 000000 0
Q ss_pred hhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhc
Q 000146 572 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 651 (2052)
Q Consensus 572 ~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s 651 (2052)
.+ .+ .+. +.-...+.+ -..+++-+-+...+..
T Consensus 352 ~~-~~----L~~---------------------------------ttFV~~V~~----------psLalmvpiL~R~l~e 383 (569)
T KOG1242|consen 352 CL-DS----LGA---------------------------------TTFVAEVDA----------PSLALMVPILKRGLAE 383 (569)
T ss_pred HH-Hh----hcc---------------------------------eeeeeeecc----------hhHHHHHHHHHHHHhh
Confidence 00 00 000 000001111 1111222333334433
Q ss_pred CCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHh
Q 000146 652 AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISER 731 (2052)
Q Consensus 652 ~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveK 731 (2052)
...-.+-.+...+ +-+..+++. +.-....+..++|++=..
T Consensus 384 Rst~~kr~t~~Ii---------------------------------------dNm~~LveD-p~~lapfl~~Llp~lk~~ 423 (569)
T KOG1242|consen 384 RSTSIKRKTAIII---------------------------------------DNMCKLVED-PKDLAPFLPSLLPGLKEN 423 (569)
T ss_pred ccchhhhhHHHHH---------------------------------------HHHHHhhcC-HHHHhhhHHHHhhHHHHH
Confidence 2222221111111 111122211 111122445556665555
Q ss_pred hhc--hhhhHHHHHHHHHHHhhhCh---hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHH-HHHhh
Q 000146 732 VAD--IKTRAHAMKCLTTFSEAVGP---GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID-FCKDT 805 (2052)
Q Consensus 732 lgd--~K~r~~a~e~L~~l~E~~~~---~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~-~l~~~ 805 (2052)
+.| +-+|..+..+|..+.|..+. +.+.+.+...+..+|.-+-+.++...++.++...|...+ ..++. .+...
T Consensus 424 ~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~--~~~~~~~~a~~ 501 (569)
T KOG1242|consen 424 LDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKV--EDILPEILANA 501 (569)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHH--HHHHHHHHHHH
Confidence 555 45788888888888776553 456777777777788888899999999999988887632 22222 22222
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcC
Q 000146 806 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 855 (2052)
Q Consensus 806 gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~ 855 (2052)
.....++.+|..-+.++..+-...|..+..|+.++-+.+++.+.+..+..
T Consensus 502 ~~~~~~~~~~dg~~~~~~~lp~~~~~~~~~yi~~i~~~~~k~~ad~de~~ 551 (569)
T KOG1242|consen 502 SSVLIDERIRDGVIWLFYLLPYIFGFQFQPYIHEILDEFLKGLADNDEKG 551 (569)
T ss_pred hhccchhhhccCeeehhhccchhhhHHhHHHHHHHHHHHHHHhhhcCCcc
Confidence 13344566899988888888888888899999888888888877655443
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-13 Score=161.27 Aligned_cols=387 Identities=16% Similarity=0.176 Sum_probs=269.5
Q ss_pred hHHHHHHHHHHhhhch---hhhHHHHHHHHHHHhhhChhHHHHHHHHHHh---hCCCHHHHHHHHHHHHHHHHHhCCCC-
Q 000146 720 CVVLCLLGISERVADI---KTRAHAMKCLTTFSEAVGPGFIFERLYKIMK---DHKNPKVLSEGILWMVSAVEDFGVSH- 792 (2052)
Q Consensus 720 ~~~~il~~LveKlgd~---K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~---~~KnpKv~~e~L~~L~~~i~~fG~~~- 792 (2052)
|...-+..++.|-|-. .+++.....+.++..++.+.+... +++.+- ..-.||-|...+++++...++|...+
T Consensus 60 w~~l~l~k~~~k~g~~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~~~g~ 138 (516)
T KOG2956|consen 60 WLKLALGKLFAKKGAEALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYPERGT 138 (516)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhcccccccccCC
Confidence 3444444555554442 245555566777788888777666 666653 34588989999999999998875432
Q ss_pred -CChHh----HHHHHHhhCCCC-CcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCC-CCCCc-
Q 000146 793 -LKLKD----LIDFCKDTGLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG-TVVPK- 864 (2052)
Q Consensus 793 -l~~k~----li~~l~~~gL~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~-~p~p~- 864 (2052)
.+.+. +..+.... +.- ....+-......++.++..+..+|...++.+.|......-+..+.+..+. .|.|.
T Consensus 139 s~~t~~~~~s~rkm~~~~-~d~~~~~l~~~~v~s~l~~~~~~n~a~fss~~d~l~p~~rD~~~~~~~~n~~~~~~~~~~a 217 (516)
T KOG2956|consen 139 SPNTKETKAAIRKMFPWM-FDPRIENLLTPHVESSLCSLFALNNADFSSLFDLLNPEKRDWAYDSLQSNGIDNGSPSPSA 217 (516)
T ss_pred CCCCCcchhhhhhccccc-cCchhhccccHHHHHHHHHHHHHHhhchHhhhhccChhhhhhHHHHHHhhCcCCCCCCchh
Confidence 22221 11221111 111 11234445566777777777778999999999998888877776654321 11111
Q ss_pred -c--cc-cccccc-----C--CCC--------------C-C--------------CCCCCCcccc-cccccHHHHhhcCC
Q 000146 865 -K--TV-RASEST-----S--SVS--------------S-G--------------GSDGLPREDI-SGKFTPTLVKSLES 903 (2052)
Q Consensus 865 -r--~~-r~~~~~-----~--~~~--------------~-~--------------~~d~lpr~dI-s~~i~~~ll~~l~d 903 (2052)
+ +. +.+... + ... + + ..|.+.+..+ ...+..+++..+.+
T Consensus 218 ~~e~~~~~~n~~~~~~~~P~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v~~~l~~~~g 297 (516)
T KOG2956|consen 218 EKERFDSSNNKPSLPLSPPEEEKPGLGSTKVNPEELRLSNETERLSRLEEYSTDDSMDQLTPNSVDQSALVADLLKEISG 297 (516)
T ss_pred hhcccccccccccccCCChhhcccCCCccccCccccccccchhhhhhchhhccCcchhhCCCCCcchhHHHHHHHHhccC
Confidence 1 00 000000 0 000 0 0 0011222111 11233466677766
Q ss_pred C-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHH
Q 000146 904 P-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 981 (2052)
Q Consensus 904 ~-~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D-sN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll 981 (2052)
. .-.+|++|+.+|.+++.+....+|...|++|+..+...|.| .+......||++|+.+++.....|..+.+..+..+|
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 5 78899999999999999877888988899999999999999 789999999999999999999999999999999999
Q ss_pred HHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC---CchhhhHHHHH
Q 000146 982 KCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPAS 1057 (2052)
Q Consensus 982 ~~l~D~k~-~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl~ 1057 (2052)
++-+|..+ ++|.|+..|+..+..+.|...+.. +...+.+. ....-.-+++++.+.++..... .-+.++++.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~-i~~~Ilt~--D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVN-ISPLILTA--DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchhHHHH-HhhHHhcC--cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 99999766 567777777888888887666544 34444332 1223466788999999887652 34566777799
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccC
Q 000146 1058 IAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1111 (2052)
Q Consensus 1058 ~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~ 1111 (2052)
++++..++.|||.|..||.+++..+|.+.|.+|+..|..++++.|+-|++++..
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s 508 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASS 508 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998753
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-07 Score=131.07 Aligned_cols=770 Identities=14% Similarity=0.110 Sum_probs=446.3
Q ss_pred hhHHHHHhcc-CcHHHHHHHHHHHHHHHHHhhhhhhhhh---HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh--
Q 000146 93 GPLFKKTVAD-SNAPVQDKALDALIAYLKAADADAGRYA---KEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV-- 165 (2052)
Q Consensus 93 ~~l~~k~v~D-sN~~aqe~gl~al~~~l~~~~~~~~~~~---~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~-- 165 (2052)
..++.++-+- ++...|+.++..|..|.+...+ ....+ .+.+|.|+.= |. +...+|..|..++..+...++.
T Consensus 16 ~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~e-nR~~Ia~~aGaIP~LV~l-L~sg~~~vk~nAaaaL~nLS~~e~nk~ 93 (2102)
T PLN03200 16 AQCIEQLRAKSSSPQEKELTTARLLELAKTREE-ARKAIGSHSQAMPLLVSL-LRSGTLGAKVNAAAVLGVLCKEEDLRV 93 (2102)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHhcChH-HHHHHHHccCcHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCHHHHH
Confidence 5666666544 4688899999999999877654 22222 2467777765 64 6788998888777776654321
Q ss_pred ----hhHHHHHHHHhhccChhhHHHHHHHHHHHHHHh-----CCCCcChHHHHhhhhhhhCCCC---hhHHHHHHHHHHH
Q 000146 166 ----DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEF-----GAKIIPPKRILKMLPELFDHQD---QNVRASSKGLTLE 233 (2052)
Q Consensus 166 ----~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~F-----G~~~i~~k~il~~l~~ll~~~d---k~VR~~a~~l~ve 233 (2052)
...++.|+..+++-++..+..|..+|..+.... +..++--.-.++.|..++.+.+ +.|++.+...+..
T Consensus 94 ~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~n 173 (2102)
T PLN03200 94 KVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRN 173 (2102)
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 244555666677767888888888887765322 1111111234566666666643 3344443333333
Q ss_pred HHHhhCCchhhHH-HHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCC
Q 000146 234 LCRWIGKDPVKTI-LFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEY 312 (2052)
Q Consensus 234 ly~~lG~~~l~~~-L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~ 312 (2052)
|..+-+ + .... +-.+.-
T Consensus 174 Ls~~~e-n-~~~~IIeaGaV------------------------------------------------------------ 191 (2102)
T PLN03200 174 LCGSTD-G-FWSATLEAGGV------------------------------------------------------------ 191 (2102)
T ss_pred HhcCcc-c-hHHHHHHcCCH------------------------------------------------------------
Confidence 332221 0 0000 000000
Q ss_pred CCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCCCCC-ChHHHHHHHHHHhc-CcCHHHHHHHHHHHH
Q 000146 313 ELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPG-DFTEVCRTLKKLIT-DVNIAVAVEAIQAIG 389 (2052)
Q Consensus 313 dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~-dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~ 389 (2052)
+.+.+.+.+.+=..+.+|...|..++. .+..... --...++.|.+++. +.+..|+..|+.+|.
T Consensus 192 --------------p~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~ 257 (2102)
T PLN03200 192 --------------DILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALE 257 (2102)
T ss_pred --------------HHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHH
Confidence 123333444445556666666655542 2211000 00123677778886 677789999999999
Q ss_pred HHHHHhhhcchhh--hhhHHHHHHHHhcc---------CcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcC-ChH
Q 000146 390 NLARGLRTHFSGS--SRFLLPVLLEKLKE---------KKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK-VPL 457 (2052)
Q Consensus 390 ~La~~L~~~f~~~--~~~llp~LL~klkd---------kK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~K-np~ 457 (2052)
.|+.+- .++..+ -...+|.|++.+.. .+...++.+.-||.+++.. ...+++.+...+.+. ...
T Consensus 258 nLAs~s-~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg----~~~ll~~L~~ll~s~rd~~ 332 (2102)
T PLN03200 258 ALSSQS-KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG----MSALILYLGELSESPRSPA 332 (2102)
T ss_pred HHhcCC-HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC----chhhHHHHHHhhcccchHH
Confidence 999741 222222 12347777777653 3455688888999988764 255677776655432 334
Q ss_pred HHHHHHHHHHHHHHhcChh-HHHHhh--hhHHHHHHHhhcCCChH-HHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHH
Q 000146 458 VRSLTLNWVTFCIETSSKA-AVLKVH--KDYVPICMECLNDGTPE-VRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 533 (2052)
Q Consensus 458 vR~~~l~~L~~~l~~~~~~-~l~~~l--~~l~p~l~k~l~Ds~~~-VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~k 533 (2052)
+-..++..+..++...... .....+ ..+++.|++++.+.++. |.+.+.++|. .++|+..+...+..-|. .+
T Consensus 333 ~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALa---sl~gN~~l~~~L~~~da--ik 407 (2102)
T PLN03200 333 PIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALA---SLYGNAYLSRKLNHAEA--KK 407 (2102)
T ss_pred HHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHH---HhcCChHHHHHHHhccc--hh
Confidence 3344555555554332211 111112 24678899999888776 4777777764 34455444333332211 11
Q ss_pred HHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 000146 534 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQET 613 (2052)
Q Consensus 534 kI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~ 613 (2052)
-+...+...+ ..++.......
T Consensus 408 ~LV~LL~~~~---------------------------~evQ~~Av~aL-------------------------------- 428 (2102)
T PLN03200 408 VLVGLITMAT---------------------------ADVQEELIRAL-------------------------------- 428 (2102)
T ss_pred hhhhhhccCC---------------------------HHHHHHHHHHH--------------------------------
Confidence 1112111000 00000000000
Q ss_pred CcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc------hHHHHHHHHHhc
Q 000146 614 SKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCM 687 (2052)
Q Consensus 614 s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~------~~~~~Lv~~L~~ 687 (2052)
+...+ -..+..........-+-++..|.+.+-..|..|+..+..+..+.+... .....|+++|.
T Consensus 429 ~~L~~---------~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~- 498 (2102)
T PLN03200 429 SSLCC---------GKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLE- 498 (2102)
T ss_pred HHHhC---------CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc-
Confidence 00000 011112222222233678899999898999999988877664422110 12345555553
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHHhhh--chhhhHHHHHHHHHHHhhhChhHHHHHHHH
Q 000146 688 LPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGFIFERLYK 763 (2052)
Q Consensus 688 ~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlg--d~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~ 763 (2052)
..+..+++.+.-++..+... ..-.+..+ .-++|.|++-+. +.+.+..|..+|..+...... .++..++.
T Consensus 499 -----s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-~~I~~Lv~ 571 (2102)
T PLN03200 499 -----TGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-ATISQLTA 571 (2102)
T ss_pred -----CCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-hHHHHHHH
Confidence 34567888888777766542 11112233 246777777664 467889999999988775444 35566776
Q ss_pred HHhhCCCHHHHHHHHHHHHHHHHHhCCC-----CCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhh
Q 000146 764 IMKDHKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 838 (2052)
Q Consensus 764 ~l~~~KnpKv~~e~L~~L~~~i~~fG~~-----~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~ 838 (2052)
. ..+.+++++..++..+..++..-... +.....-++.+..+ +.+.+..++..|..++..++....+.
T Consensus 572 L-Llsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~L-L~sgs~~ikk~Aa~iLsnL~a~~~d~------ 643 (2102)
T PLN03200 572 L-LLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQL-LSSSKEETQEKAASVLADIFSSRQDL------ 643 (2102)
T ss_pred H-hcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCChHH------
Confidence 5 47888999998888887776521111 01112356667777 89999999999999888877532110
Q ss_pred hccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHH
Q 000146 839 DVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK 918 (2052)
Q Consensus 839 ~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ 918 (2052)
. +.... ....+-++..+.+.+.++|+++...|..
T Consensus 644 ------~---~avv~-------------------------------------agaIpPLV~LLss~~~~v~keAA~AL~n 677 (2102)
T PLN03200 644 ------C---ESLAT-------------------------------------DEIINPCIKLLTNNTEAVATQSARALAA 677 (2102)
T ss_pred ------H---HHHHH-------------------------------------cCCHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 0 00000 0012346777888889999999999998
Q ss_pred HHHhcccc-CCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHH
Q 000146 919 ILEEANKR-IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLT 997 (2052)
Q Consensus 919 ll~~a~~~-I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~ 997 (2052)
+....+.. ...-.-...++.|.+.|++.+..++..|+..|..++..-...-+-.....+++++..+.+....+|+.|..
T Consensus 678 L~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~ 757 (2102)
T PLN03200 678 LSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAAR 757 (2102)
T ss_pred HHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHH
Confidence 88532110 00000134678899999999999999999999999976432222223456899999999999999999999
Q ss_pred HHHHHHHhcCchhhH----------HHHHHHHhcCccC-hhH--HHHHHHHHHHHhccCCC-CC------chhhhHHHHH
Q 000146 998 VLDAWLAAVHLDKMV----------PYVTTALTDAKLG-AEG--RKDLFDWLSKQLTGLSG-FP------DAAHLLKPAS 1057 (2052)
Q Consensus 998 aL~~i~~~~~l~~ll----------~~l~~~L~~~k~n-p~~--R~~~l~~L~~~l~~~~~-~~------~~~~ll~pl~ 1057 (2052)
+|..+..+.+.+..+ ..+...|...... ... =.+++.||++.=..... .+ +...-+.||+
T Consensus 758 AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~ 837 (2102)
T PLN03200 758 ALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLV 837 (2102)
T ss_pred HHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHH
Confidence 999999988866643 2355566533211 111 24455555542111111 12 2234577899
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHH
Q 000146 1058 IAMTDKSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1058 ~~L~D~~~dVRkaA~~~L~~l~~ 1080 (2052)
.||.+.+++|.+.|.+.|..+.+
T Consensus 838 ~~l~~~~p~~~~kai~il~~~~~ 860 (2102)
T PLN03200 838 RCLAEGHPLVQDKAIEILSRLCR 860 (2102)
T ss_pred HHHHcCChHHHHHHHHHHHHHhc
Confidence 99999999999999998877754
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-09 Score=133.43 Aligned_cols=590 Identities=18% Similarity=0.200 Sum_probs=342.8
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcC
Q 000146 375 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNK 454 (2052)
Q Consensus 375 D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~K 454 (2052)
|.....+...-.+|..|++.-|=. ..+..+=--+..+.+-||+-...|...++.+ ..++.+++-|.+.+++|
T Consensus 452 ded~yar~egreIisnLakaaGla------~mistmrpDidn~deYVRnttarafavvasa--lgip~llpfLkavc~Sk 523 (1172)
T KOG0213|consen 452 DEDYYARVEGREIISNLAKAAGLA------TMISTMRPDIDNKDEYVRNTTARAFAVVASA--LGIPALLPFLKAVCGSK 523 (1172)
T ss_pred cchHHHhhchHHHHHHHHHHhhhH------HHHHhhcCCcccccHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHhccc
Confidence 444445555556666665533311 1122222223445577888888888888876 78899999999888876
Q ss_pred -ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC---ChhHHHhHhhccHH
Q 000146 455 -VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG---MRPLERSIEKLDDV 530 (2052)
Q Consensus 455 -np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G---e~~~~~~l~~Ld~~ 530 (2052)
+|+-|..+......+..-.+-+ ..++++.++.++-++|.|.+..||--+.-+++++.+..+ -+.|+..+.-|-..
T Consensus 524 kSwqaRhTgIkivqqIail~Gcs-vlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 524 KSWQARHTGIKIVQQIAILSGCS-VLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred cchhhhchhhHHHHHHHHHhcch-hhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 8999999888887765444433 347889999999999999999999999999999999876 23445544444221
Q ss_pred HH----HHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000146 531 RR----NKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKD 606 (2052)
Q Consensus 531 k~----kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~ 606 (2052)
-+ +-+..++...|...+-.. ++-. +-..+. .+.--.
T Consensus 603 ir~hrgk~laafLkAigyliplmd--------------~eya-~yyTre---vmlil~---------------------- 642 (1172)
T KOG0213|consen 603 IRQHRGKELAAFLKAIGYLIPLMD--------------AEYA-SYYTRE---VMLILI---------------------- 642 (1172)
T ss_pred HHHccChHHHHHHHHHhhcccccc--------------HHHH-HHhHHH---HHHHHH----------------------
Confidence 11 222222222211100000 0000 000000 000000
Q ss_pred CCCCCcCCcCCCCCCCCCCCCCCHHHHH-------HHh-------hccCcHHHHHhhhcCCHHHHHHH----HHHHHHHH
Q 000146 607 GSGKQETSKLTEAPEDVEPSEMSLEEIE-------SRL-------GSLIPADTVGQLKSAVWKERLEA----ISSLRQQV 668 (2052)
Q Consensus 607 ~~~~~~~s~~~~~~~~~~~~~~s~ee~e-------~~~-------~~ll~~~l~~~L~s~~Wk~Rl~a----le~L~~~v 668 (2052)
.|....+||.. .+. ..++..+++..++.+=|..|.++ +..+...-
T Consensus 643 -----------------rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~tt 705 (1172)
T KOG0213|consen 643 -----------------REFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTT 705 (1172)
T ss_pred -----------------HhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHH
Confidence 00000001110 000 12334567778888889999887 33333221
Q ss_pred HhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC--CchhhHHHHHHHHHHhhhchhhhHH-HHHHH
Q 000146 669 EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK--FPKKCVVLCLLGISERVADIKTRAH-AMKCL 745 (2052)
Q Consensus 669 ~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~--~~~~~~~~il~~LveKlgd~K~r~~-a~e~L 745 (2052)
-+....-.+.+.+-|.+. .++|-+.|-.....+++..++.+++. +..+....++.+++-.+...-+-+. ....+
T Consensus 706 v~ia~KvG~~~~v~R~v~---~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gf 782 (1172)
T KOG0213|consen 706 VEIAAKVGSDPIVSRVVL---DLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGF 782 (1172)
T ss_pred HHHHHHhCchHHHHHHhh---hhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhH
Confidence 111110012234444433 37888889888899999888888754 5555556666666655544222111 12334
Q ss_pred HHHHhhhCh------hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHH----HhhCCCCCcHHHH
Q 000146 746 TTFSEAVGP------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC----KDTGLQSSAAATR 815 (2052)
Q Consensus 746 ~~l~E~~~~------~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l----~~~gL~~~n~~VR 815 (2052)
..++..++. ..++..++..+ ++|+|+||+.++..++.+..-.... .-..++..+ -.. |+...|+|-
T Consensus 783 g~V~~~lg~r~kpylpqi~stiL~rL-nnksa~vRqqaadlis~la~Vlktc--~ee~~m~~lGvvLyEy-lgeeypEvL 858 (1172)
T KOG0213|consen 783 GTVVNALGGRVKPYLPQICSTILWRL-NNKSAKVRQQAADLISSLAKVLKTC--GEEKLMGHLGVVLYEY-LGEEYPEVL 858 (1172)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHhc--cHHHHHHHhhHHHHHh-cCcccHHHH
Confidence 444443332 23444555554 8999999999998877665322110 001122211 111 333333333
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccH
Q 000146 816 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTP 895 (2052)
Q Consensus 816 ~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~ 895 (2052)
-.-+..+..+|..+|-. |. .| |-.||.+.|+|
T Consensus 859 gsILgAikaI~nvigm~---------------------km---~p------------------------Pi~dllPrltP 890 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMT---------------------KM---TP------------------------PIKDLLPRLTP 890 (1172)
T ss_pred HHHHHHHHHHHHhcccc---------------------cc---CC------------------------ChhhhcccchH
Confidence 33333333333333311 00 01 11123333443
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChh-------
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA------- 968 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~------- 968 (2052)
.+.++--|+-...++.++.|+..+..++...-+--+.--|...|+--|+.++..|.+++|.|+++.|+.
T Consensus 891 ----ILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLl 966 (1172)
T KOG0213|consen 891 ----ILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLL 966 (1172)
T ss_pred ----hhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHH
Confidence 345666777888899999888765444443333345555667777889999999999999999999974
Q ss_pred --h---HHhh-----------------hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHh
Q 000146 969 --V---EKSS-----------------KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALT 1020 (2052)
Q Consensus 969 --~---~~~~-----------------~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~ 1020 (2052)
+ +++. -.++|.+++-+.-...+|.+-...+|..+++.+| +-.+.|.|.++|-
T Consensus 967 nnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlm 1046 (1172)
T KOG0213|consen 967 NNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALM 1046 (1172)
T ss_pred hcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhc
Confidence 0 0000 1356777777777777888888888888887776 2345667777776
Q ss_pred cCccChhHHHHHHHHHHHHhccCCCCC---chhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000146 1021 DAKLGAEGRKDLFDWLSKQLTGLSGFP---DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1091 (2052)
Q Consensus 1021 ~~k~np~~R~~~l~~L~~~l~~~~~~~---~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l 1091 (2052)
+. ++.-|+.+...+....-+..... .+.+++.-+...+-|.++-|-.+-.+|+..+...+|...|.+++
T Consensus 1047 Dr--D~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~ 1118 (1172)
T KOG0213|consen 1047 DR--DLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYC 1118 (1172)
T ss_pred cc--cHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 54 45667777766665443333221 22345555777789999999999999999999999999999886
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-10 Score=137.48 Aligned_cols=639 Identities=15% Similarity=0.170 Sum_probs=372.3
Q ss_pred ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH----hhhcc-hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000146 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG----LRTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 435 (2052)
Q Consensus 361 dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~----L~~~f-~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~ 435 (2052)
++.++.+.|..++.....+....|..++..+++. +..++ .+....++|.+|+-++...+.+|..+..|++.++-.
T Consensus 125 ~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 3455666666666522222355666555555543 33333 367889999999999999999999999999988754
Q ss_pred cC----CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000146 436 GC----LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 511 (2052)
Q Consensus 436 ~~----~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 511 (2052)
.+ .+++.+++.+..--.+.+|.||...+..|..+++..+. .+.+++..++..+.+...|.+.+|--.|+|-.-++
T Consensus 205 ~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 205 QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL 283 (885)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence 11 34677788877666788999999999999998886654 46788999999999999999999988888877777
Q ss_pred HHH-hCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCC
Q 000146 512 AKS-VGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAA 590 (2052)
Q Consensus 512 ~~~-~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~ 590 (2052)
+.. +....+.+|+++|-|.-..... |-+ .-..-- . ...+...++... ...+|.-.
T Consensus 284 aeqpi~~~~L~p~l~kliPvLl~~M~-Ysd----~D~~LL-------------~-~~eeD~~vpDre----eDIkPRfh- 339 (885)
T KOG2023|consen 284 AEQPICKEVLQPYLDKLIPVLLSGMV-YSD----DDIILL-------------K-NNEEDESVPDRE----EDIKPRFH- 339 (885)
T ss_pred hcCcCcHHHHHHHHHHHHHHHHccCc-ccc----ccHHHh-------------c-CccccccCCchh----hhccchhh-
Confidence 644 2345577887777654332210 000 000000 0 000000000000 00111100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCC---HHHHH----HHhhccCc--------HHHHHhhhcCCHH
Q 000146 591 PASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS---LEEIE----SRLGSLIP--------ADTVGQLKSAVWK 655 (2052)
Q Consensus 591 ~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s---~ee~e----~~~~~ll~--------~~l~~~L~s~~Wk 655 (2052)
|+...+.+..+ ...-.+..++-.....+ ..-+. ..++.+++ |-+.+.|.+.+|+
T Consensus 340 ---------ksk~~~~~~~~--~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~ 408 (885)
T KOG2023|consen 340 ---------KSKEHGNGEDA--DDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWK 408 (885)
T ss_pred ---------hchhccCcccc--ccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhh
Confidence 01000000000 00000000000001111 11111 22334444 3445678899999
Q ss_pred HHHHHHHHHHHHHHh-ccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHHHHHhhh
Q 000146 656 ERLEAISSLRQQVEA-VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA-TKFPKKCVVLCLLGISERVA 733 (2052)
Q Consensus 656 ~Rl~ale~L~~~v~~-~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~-~~~~~~~~~~il~~LveKlg 733 (2052)
.|.+|+-.|..+.++ ++-..+....|+.+|.. -+.|+-.-|....+=+|..+..-. ..-....+..++.+++.++-
T Consensus 409 vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~--~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~ll 486 (885)
T KOG2023|consen 409 VREAGVLALGAIAEGCMQGFVPHLPELIPFLLS--LLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLL 486 (885)
T ss_pred hhhhhHHHHHHHHHHHhhhcccchHHHHHHHHH--HhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHh
Confidence 999999999988877 44433344455555532 244544444443333333222211 11133567788899999998
Q ss_pred ch--hhhHHHHHHHHHHHhhhChh------HHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHhCCC--CC--ChHhHH
Q 000146 734 DI--KTRAHAMKCLTTFSEAVGPG------FIFERLYKIMK--DHKNPKVLSEGILWMVSAVEDFGVS--HL--KLKDLI 799 (2052)
Q Consensus 734 d~--K~r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l~--~~KnpKv~~e~L~~L~~~i~~fG~~--~l--~~k~li 799 (2052)
|. |++++|..++..+-|..+.+ +++.+++.... ++||-.+.-.++..|+..+...=-+ .+ -+.+++
T Consensus 487 D~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi 566 (885)
T KOG2023|consen 487 DSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLI 566 (885)
T ss_pred cccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHH
Confidence 85 58999999999988877754 34555544432 4899999999998888877322111 11 123444
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHH---hcCCCCCCCCCccccccccccCCC
Q 000146 800 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY---EKNPFEGTVVPKKTVRASESTSSV 876 (2052)
Q Consensus 800 ~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~ef---eK~~~~~~p~p~r~~r~~~~~~~~ 876 (2052)
+.-. . +.++++++-- -.+|+..+...+|..+.+|-..+-..-...|++-. .++.. +++
T Consensus 567 ~KW~-~-lsd~DKdLfP-LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~--~~~-------------- 627 (885)
T KOG2023|consen 567 EKWE-L-LSDSDKDLFP-LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQ--DPT-------------- 627 (885)
T ss_pred HHHH-h-cCcccchHHH-HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccC--Ccc--------------
Confidence 4333 3 7888887643 45677778888888887776544433344444222 22211 110
Q ss_pred CCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhhhccchHHHHHHHH
Q 000146 877 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATL 955 (2052)
Q Consensus 877 ~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~aL~~rL~DsN~~V~~~Al 955 (2052)
-..|.-|.. | -+++.+.++.++-...+.+-. -..|...|...+.|.-..|++.+.
T Consensus 628 -----~~~pdkdfi--I-----------------~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~F 683 (885)
T KOG2023|consen 628 -----VEAPDKDFI--I-----------------VSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAF 683 (885)
T ss_pred -----ccCCCcceE--E-----------------EeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHH
Confidence 011111111 1 123333333332222232210 145888899999999999999999
Q ss_pred HHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch------hhHHHHHHHHhcCccChhHH
Q 000146 956 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD------KMVPYVTTALTDAKLGAEGR 1029 (2052)
Q Consensus 956 ~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~------~ll~~l~~~L~~~k~np~~R 1029 (2052)
..+|.+++++-....++...++|.+...+.-.+-.+..-|.-+++.++...|.+ .++..+...+..++ + -
T Consensus 684 ALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~-~---~ 759 (885)
T KOG2023|consen 684 ALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQN-T---P 759 (885)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccC-c---h
Confidence 999999999988889999999999998888888889999999999999988743 34445555555442 1 2
Q ss_pred HHHHHHHHHHhccCCC------CCchhhhHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1030 KDLFDWLSKQLTGLSG------FPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1030 ~~~l~~L~~~l~~~~~------~~~~~~ll~pl~~~L-~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
.++++-.+-.+...+- .+++..++.|-...| +=++.+-++.|...+-.++.+-+.
T Consensus 760 ~tllENtAITIGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~ 821 (885)
T KOG2023|consen 760 KTLLENTAITIGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPS 821 (885)
T ss_pred HHHHHhhhhhhhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCch
Confidence 3444443333333221 245667777743333 112233466676666555554443
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.9e-11 Score=146.29 Aligned_cols=336 Identities=18% Similarity=0.177 Sum_probs=248.3
Q ss_pred HhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHH-----hhhhhhhHHHHH
Q 000146 99 TVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWV-----ELEAVDVFLDVM 172 (2052)
Q Consensus 99 ~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~-----e~~~~~~v~e~L 172 (2052)
-+.-.-..+|+.-..||-.++-...... ..-+..+..++++ .+..-+..+...+--++ +......++..|
T Consensus 104 ~~~tps~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l 179 (569)
T KOG1242|consen 104 ELDTPSKSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNL 179 (569)
T ss_pred hcCCCcHHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHH
Confidence 3444556778888888877765543322 2223334455576 45555544333322222 223456788889
Q ss_pred HHHhhccChhhHH-HHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhh
Q 000146 173 EKAIKNKVAKAVV-PAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEK 250 (2052)
Q Consensus 173 l~~l~~K~PKvv~-~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~ 250 (2052)
.++..+|++.... +++.+........|...-| +-++++.+..-|+|..+.||++|...+..+.+.+.+-.++..+
T Consensus 180 ~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ll--- 256 (569)
T KOG1242|consen 180 SKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLL--- 256 (569)
T ss_pred HHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhh---
Confidence 8998888776544 5666666777777864433 6678888888899999999999998877777766432222111
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhh
Q 000146 251 MRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFW 330 (2052)
Q Consensus 251 Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~ 330 (2052)
| + ..
T Consensus 257 --------------------------------------------------------------------------p-s-ll 260 (569)
T KOG1242|consen 257 --------------------------------------------------------------------------P-S-LL 260 (569)
T ss_pred --------------------------------------------------------------------------h-h-hH
Confidence 0 0 11
Q ss_pred hhcccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHH
Q 000146 331 EGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 409 (2052)
Q Consensus 331 ~~l~s~kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 409 (2052)
..+.+.+|+.+..+++-|..++ ..|+.......++++.|.+++.|+++.|+..+..|+..++...+. +-+..++|.
T Consensus 261 ~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN---~dI~~~ip~ 337 (569)
T KOG1242|consen 261 GSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN---PDIQKIIPT 337 (569)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---HHHHHHHHH
Confidence 1122238999999999999888 467666667889999999999999999999999999999988875 347788999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc-ChhHHHHhhhhHH
Q 000146 410 LLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYV 486 (2052)
Q Consensus 410 LL~klkdkK~~V~~aa~~aL~ai~~~--~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~ 486 (2052)
|++.+.|.+..+.++......+=|-+ ...+++-++|.+..++...+..+|..+...+..+..-+ ++..+.++++.++
T Consensus 338 Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Ll 417 (569)
T KOG1242|consen 338 LLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLL 417 (569)
T ss_pred HHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHh
Confidence 99999999977776555444433322 23568889999999999999999999999998887776 6778889999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhH
Q 000146 487 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL 520 (2052)
Q Consensus 487 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~ 520 (2052)
|.+.+.+.|+.|+||..|.++|+.+.+.+|++.+
T Consensus 418 p~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f 451 (569)
T KOG1242|consen 418 PGLKENLDDAVPEVRAVAARALGALLERLGEVSF 451 (569)
T ss_pred hHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999998654
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-07 Score=118.12 Aligned_cols=557 Identities=14% Similarity=0.170 Sum_probs=320.7
Q ss_pred CHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHh
Q 000146 653 VWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISER 731 (2052)
Q Consensus 653 ~Wk~Rl~ale~L~~~v~~~~~~-~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveK 731 (2052)
.|+.|-.|+.-.+++..-.+-. -+....|+..+.+ |++|-+..|.-..-..+..+++..+.+.-..++.++-.|-+-
T Consensus 525 SwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~--gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkg 602 (1172)
T KOG0213|consen 525 SWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEH--GLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKG 602 (1172)
T ss_pred chhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHH--hhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 5777777777777665443221 1234556666654 688888888777777788888887777666677776665544
Q ss_pred hhchhhhHHHHHHHHHHHhhhC-------h---hHHHHHHHHHH---hhCCCHHHHHHHHHHHHHHHHHhCCCC--CChH
Q 000146 732 VADIKTRAHAMKCLTTFSEAVG-------P---GFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSH--LKLK 796 (2052)
Q Consensus 732 lgd~K~r~~a~e~L~~l~E~~~-------~---~~Vl~~L~~~l---~~~KnpKv~~e~L~~L~~~i~~fG~~~--l~~k 796 (2052)
+...+-+ . |.+|..+.+ + .+.-.+++-.+ ++.+.-....-.|..+.++...-|... +-..
T Consensus 603 ir~hrgk--~---laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~d 677 (1172)
T KOG0213|consen 603 IRQHRGK--E---LAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFD 677 (1172)
T ss_pred HHHccCh--H---HHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhh
Confidence 3322211 1 222222211 1 11122222221 345555555566666666665555431 1001
Q ss_pred hHHHHHHhhCCCCCcHHHHHHHH---------HHHHHHHHhhChh--hHhhh---hhccHHHHHHHHHHHhcCCCCCCCC
Q 000146 797 DLIDFCKDTGLQSSAAATRNATI---------KLLGALHKFVGPD--IKGFL---ADVKPALLSALDAEYEKNPFEGTVV 862 (2052)
Q Consensus 797 ~li~~l~~~gL~~~n~~VR~aA~---------~ll~~Ly~~~G~~--l~~~L---~~lkP~ll~~Le~efeK~~~~~~p~ 862 (2052)
.+-.|+... -.|..|. .+.+++...+|.+ +...+ .+.++...+....-.+++-
T Consensus 678 ilp~ff~~f-------w~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~------ 744 (1172)
T KOG0213|consen 678 ILPEFFFSF-------WGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIV------ 744 (1172)
T ss_pred hhHHHHhhh-------hhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHH------
Confidence 111222211 1222222 3556777778854 22222 3333333333222222221
Q ss_pred CccccccccccCCCCCCCCCCCCcccccccccHHHHhh----cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHH
Q 000146 863 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKS----LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGG 938 (2052)
Q Consensus 863 p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~----l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~a 938 (2052)
..+++.||...+-.-++.. +....-.+ .-.+..+..+...-..+.+|.. ..++..
T Consensus 745 -------------------~~lg~~diderleE~lidgil~Afqeqtt~d-~vml~gfg~V~~~lg~r~kpyl-pqi~st 803 (1172)
T KOG0213|consen 745 -------------------GRLGAADIDERLEERLIDGILYAFQEQTTED-SVMLLGFGTVVNALGGRVKPYL-PQICST 803 (1172)
T ss_pred -------------------hccccccccHHHHHHHHHHHHHHHHhcccch-hhhhhhHHHHHHHHhhccccch-HHHHHH
Confidence 1234444444433333332 22111111 1234455555554457778875 899999
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHhChh-hHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-------hh
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-------DK 1010 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~alg~~-~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l-------~~ 1010 (2052)
...+|+..-.+|+++|+.+++.++..|..- -++.+..+--.+.+.|++..+.|-.....||.+|+...|+ ..
T Consensus 804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~d 883 (1172)
T KOG0213|consen 804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD 883 (1172)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence 999999999999999999999999988643 2345566666778999999999999999999999998864 56
Q ss_pred hHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC---CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhH-
Q 000146 1011 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQET- 1086 (2052)
Q Consensus 1011 ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~- 1086 (2052)
++|.|.+.|+++ ...+...++..+.+.-..-+.. .++..++-.|+..|.--+.++|.+|...++.+.+.+|+..
T Consensus 884 llPrltPILknr--heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdV 961 (1172)
T KOG0213|consen 884 LLPRLTPILKNR--HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDV 961 (1172)
T ss_pred hcccchHhhhhh--HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHH
Confidence 777888888864 2345566777666544433332 3555666668888888899999999999999999999854
Q ss_pred HHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccc-------c
Q 000146 1087 IEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIM-------S 1159 (2052)
Q Consensus 1087 ~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~-------~ 1159 (2052)
+.-.++.|+...+.. +.....+- +.......|-+.- .
T Consensus 962 LatLlnnLkvqeRq~------RvcTtvaI------------------------------aIVaE~c~pFtVLPalmneYr 1005 (1172)
T KOG0213|consen 962 LATLLNNLKVQERQN------RVCTTVAI------------------------------AIVAETCGPFTVLPALMNEYR 1005 (1172)
T ss_pred HHHHHhcchHHHHHh------chhhhhhh------------------------------hhhhhhcCchhhhHHHHhhcc
Confidence 455567776443321 11100000 0000000000000 0
Q ss_pred cchhhhhhhhccccCCCchHHHhhhhhccccccCCChhHHHHHHHHHHh----hhhHHHHHhhcCcCHHHHHHHHHHHHH
Q 000146 1160 VQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMK----YFREDLHRRLLSTDFKKQVDGLEMLQK 1235 (2052)
Q Consensus 1160 ~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~pr~e~ve~L~~q~~~----~~~~~l~~~lfs~D~k~~l~al~~L~~ 1235 (2052)
.+..-++.+. ++...+-|+- . .+|+. .+.+=|-+.|.+-|.-+|.-|...+..
T Consensus 1006 tPe~nVQnGV--------------Lkalsf~Fey--------i-gemskdYiyav~PlleDAlmDrD~vhRqta~~~I~H 1062 (1172)
T KOG0213|consen 1006 TPEANVQNGV--------------LKALSFMFEY--------I-GEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKH 1062 (1172)
T ss_pred CchhHHHHhH--------------HHHHHHHHHH--------H-HHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHH
Confidence 0000111111 1122222321 1 12221 244556677778898888888877765
Q ss_pred hcCc---C--hhhhHHHHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCCChHH
Q 000146 1236 ALPS---I--RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEK 1310 (2052)
Q Consensus 1236 ~l~~---~--~~~~i~~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd~k~~ 1310 (2052)
..=. . .+.+|. |+.++--.++|+.|.|.+.+.|.+..+=..|. ...++.|.+.-+=|+-..
T Consensus 1063 l~Lg~~g~g~eda~iH----LLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg----------~~~~~~Y~~QGLFHPark 1128 (1172)
T KOG0213|consen 1063 LALGVPGTGCEDALIH----LLNLIWPNILETSPHVIQAFDEAMEGLRVALG----------PQAMLKYCLQGLFHPARK 1128 (1172)
T ss_pred HhcCCCCcCcHHHHHH----HHHHhhhhhcCCChHHHHHHHHHHHHHHHHhc----------hHHHHHHHHHhccCcHHH
Confidence 4211 1 133444 33343346799999999999998887655554 356788888888889889
Q ss_pred HHHHHHHHHHHHhhc
Q 000146 1311 VREKMRELTKQIVNF 1325 (2052)
Q Consensus 1311 vr~~v~~il~~~~~v 1325 (2052)
||+..+.++..+...
T Consensus 1129 VR~~yw~vyn~my~~ 1143 (1172)
T KOG0213|consen 1129 VRKRYWTVYNSMYHG 1143 (1172)
T ss_pred HHHHHHHHHHhHhhc
Confidence 999999998766543
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-06 Score=124.66 Aligned_cols=810 Identities=16% Similarity=0.139 Sum_probs=461.2
Q ss_pred hhhhhcccC--ChHHHHHHHHHHHHHhcCC---CCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH--hhhcch
Q 000146 328 GFWEGVKAT--KWSERKDAVAELTKLASTK---RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFS 400 (2052)
Q Consensus 328 ~f~~~l~s~--kWkeR~eaL~~L~~L~~~~---ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~ 400 (2052)
.+.+++.+. +-++|+.|+.+|+.+++.. |..-.+....++.|...|...+..+...|+.++..|+.. .+...
T Consensus 17 ~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~I- 95 (2102)
T PLN03200 17 QCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKV- 95 (2102)
T ss_pred HHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHH-
Confidence 567777765 6789999999999988532 111012234567777777755677788888888888754 22221
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CCC-------HHHHHHHHHHHhhcCCh---HHHHHHHHHHHHH
Q 000146 401 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CLN-------LVDVVEDVKTSVKNKVP---LVRSLTLNWVTFC 469 (2052)
Q Consensus 401 ~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~-~~~-------l~~ll~~l~~~L~~Knp---~vR~~~l~~L~~~ 469 (2052)
-....+|+|++.+++.....++.+..+|..+..+. |.. -...++.|...+++.+. -++..++..|..+
T Consensus 96 -v~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nL 174 (2102)
T PLN03200 96 -LLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNL 174 (2102)
T ss_pred -HHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 13578999999999999999999999999998641 111 13456777777776542 2444445566554
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCC
Q 000146 470 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVAT 548 (2052)
Q Consensus 470 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~ 548 (2052)
.... .......+ .-.+|.++.+|.+.++.++..|..++..++...++ . +..|.+ . |+
T Consensus 175 s~~~-en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~------------~~aVIe---a-Ga---- 232 (2102)
T PLN03200 175 CGST-DGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-S------------ISKVLD---A-GA---- 232 (2102)
T ss_pred hcCc-cchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-H------------HHHHHH---C-CC----
Confidence 4332 22111112 23889999999999999998887777655433221 0 111111 0 00
Q ss_pred CCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCC
Q 000146 549 GTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEM 628 (2052)
Q Consensus 549 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 628 (2052)
T Consensus 233 -------------------------------------------------------------------------------- 232 (2102)
T PLN03200 233 -------------------------------------------------------------------------------- 232 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHhhccCcHHHHHhhhc-CCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH
Q 000146 629 SLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 707 (2052)
Q Consensus 629 s~ee~e~~~~~ll~~~l~~~L~s-~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~ 707 (2052)
-+.+++.|.+ .+-..|.+|.--|..+..... ...+.+++ ..++..|.
T Consensus 233 -------------VP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~---e~r~~Iv~----------------aGgIp~LI 280 (2102)
T PLN03200 233 -------------VKQLLKLLGQGNEVSVRAEAAGALEALSSQSK---EAKQAIAD----------------AGGIPALI 280 (2102)
T ss_pred -------------HHHHHHHHccCCChHHHHHHHHHHHHHhcCCH---HHHHHHHH----------------CCCHHHHH
Confidence 0223444433 334556666666654443210 11111111 01111111
Q ss_pred HHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Q 000146 708 YLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 787 (2052)
Q Consensus 708 ~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~ 787 (2052)
.++.. +. +.+ +. .-...-+++.|.-+|..+|.-. ..++..|...+-......+...++..+..++..
T Consensus 281 ~lL~s-p~--~e~----~~----~~~~~~Lqe~AvwALsNIcgg~--~~ll~~L~~ll~s~rd~~~~ada~gALayll~l 347 (2102)
T PLN03200 281 NATVA-PS--KEF----MQ----GEFAQALQENAMGALANICGGM--SALILYLGELSESPRSPAPIADTLGALAYALMV 347 (2102)
T ss_pred HHHhC-cc--hhh----hc----cccchHHHHHHHHHHHHHhCCc--hhhHHHHHHhhcccchHHHHHHHHhhHHHHHHh
Confidence 11110 00 000 00 0000113455555555555432 234444444432334555666777777777665
Q ss_pred hCCCC-----CChHhHHHHHHhhCCCCCcHH-HHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 000146 788 FGVSH-----LKLKDLIDFCKDTGLQSSAAA-TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 861 (2052)
Q Consensus 788 fG~~~-----l~~k~li~~l~~~gL~~~n~~-VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p 861 (2052)
+.... ++...+...+.++ +.+.++. |...+..++..+|.. |.+.+.|.+.
T Consensus 348 ~d~~~~~~~~i~~~~v~~~LV~L-lr~k~p~~vqe~V~eALasl~gN-------------~~l~~~L~~~---------- 403 (2102)
T PLN03200 348 FDSSAESTRAFDPTVIEQILVKL-LKPRDTKLVQERIIEALASLYGN-------------AYLSRKLNHA---------- 403 (2102)
T ss_pred cCCchhhhhhccccccHHHHHHH-hCCCCCchhHHHHHHHHHHhcCC-------------hHHHHHHHhc----------
Confidence 54321 1222334455566 7777766 366666666555521 1112222110
Q ss_pred CCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000146 862 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 941 (2052)
Q Consensus 862 ~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~ 941 (2052)
| ..+-++..+...+-..+.+++..|..++...+..++.-.-...++.|..
T Consensus 404 --------------------d----------aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~ 453 (2102)
T PLN03200 404 --------------------E----------AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLIS 453 (2102)
T ss_pred --------------------c----------chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHH
Confidence 0 0123455555556677888888887777432111110001235788888
Q ss_pred hhccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----c--hhhHH
Q 000146 942 RLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----L--DKMVP 1013 (2052)
Q Consensus 942 rL~DsN~~V~~~Al~~l~~la~alg~~~~~~-~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-----l--~~ll~ 1013 (2052)
.|...+..++..|+.+++.++..-...-... -...+|.+++.|...+..++..|..+|..+..+-. + ...+|
T Consensus 454 LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIp 533 (2102)
T PLN03200 454 LLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVP 533 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHH
Confidence 8888889999999999999975322211111 13478999999999999999999899988765321 1 23567
Q ss_pred HHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhcc
Q 000146 1014 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKD 1093 (2052)
Q Consensus 1014 ~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~ 1093 (2052)
.|...|.+. ++..+..++..|...+... ....+++++..|...++.+...+..+++.+......+.+.... .
T Consensus 534 pLV~LL~sg--d~~~q~~Aa~AL~nLi~~~-----d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g-~ 605 (2102)
T PLN03200 534 ALLWLLKNG--GPKGQEIAAKTLTKLVRTA-----DAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREG-S 605 (2102)
T ss_pred HHHHHHhCC--CHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh-h
Confidence 788888865 4778888877777654431 1345577777787778888888888887776655543322111 0
Q ss_pred CChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhcccc
Q 000146 1094 IQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNV 1173 (2052)
Q Consensus 1094 L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1173 (2052)
....-...+.+.++..
T Consensus 606 ~~~ggL~~Lv~LL~sg---------------------------------------------------------------- 621 (2102)
T PLN03200 606 AANDALRTLIQLLSSS---------------------------------------------------------------- 621 (2102)
T ss_pred hccccHHHHHHHHcCC----------------------------------------------------------------
Confidence 0111222222222110
Q ss_pred CCCchHHHh-hhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCcChhh-hHHHHH-H
Q 000146 1174 KDSNKEDRE-RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD-IIEVLD-I 1250 (2052)
Q Consensus 1174 ~~~~k~~R~-~~~~~k~~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~-~i~~lD-l 1250 (2052)
.+..+. .-..+ +++...+.+..+.+- +...+ +-++.+|.+.++..+.++.-.|.....+.... .....+ =
T Consensus 622 ---s~~ikk~Aa~iL-snL~a~~~d~~~avv--~agaI-pPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~G 694 (2102)
T PLN03200 622 ---KEETQEKAASVL-ADIFSSRQDLCESLA--TDEII-NPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAED 694 (2102)
T ss_pred ---CHHHHHHHHHHH-HHHhcCChHHHHHHH--HcCCH-HHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcC
Confidence 000000 00000 122223444433321 11223 35788889999998888888877776544322 111111 1
Q ss_pred HHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCCChHHHHHHHHHHHHHHhhcCCccc
Q 000146 1251 LLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1330 (2052)
Q Consensus 1251 llk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~sk 1330 (2052)
.++-+..-+.+.+..+...+++.|..++..-.. -.+.-..-.||.|+.-+.+..+.+|+..-..+-++|.-+|...
T Consensus 695 aV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~----~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 695 AIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV----AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred CHHHHHHHHhCCChHHHHHHHHHHHHHHcCchH----HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 233333335788999999999988876432111 0111123458999888888778889998899999999999776
Q ss_pred cH----------HHHHhhhcCCChhh--HHHHHHHHHHHHHh-hCCCcccc--------cchHHHHHHHhcCCChHHHHH
Q 000146 1331 TL----------PYILEGLRSKNNRT--RIECVDLVGFLIDH-HGAEISGQ--------LKSLQIVASLTAERDGEIRKA 1389 (2052)
Q Consensus 1331 vf----------~~l~~gl~sKN~r~--R~ecl~~l~~li~~-~G~~~~~~--------~K~l~~ia~~i~drd~~VR~A 1389 (2052)
+| .-|++-|++-|.+. -.|.|+.|+.+... +|..-.-| +-.|..+..++.+-++.|-..
T Consensus 771 ~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~k 850 (2102)
T PLN03200 771 VLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDK 850 (2102)
T ss_pred HHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHH
Confidence 44 23455566666554 44689999988874 33332111 235677778889999999999
Q ss_pred HHHHHHHHHHHhChHHHHHhhc---CCHHHHHHHHHHHHhh
Q 000146 1390 ALNTLATGYKILGEDIWRYVGK---LTDAQKSMLDDRFKWK 1427 (2052)
Q Consensus 1390 Al~~l~~~y~~~G~~v~~~~g~---ls~~~~s~leer~kr~ 1427 (2052)
|+..|. .+|+|+-. .+|+ =.++-.+.|-.|+=.+
T Consensus 851 ai~il~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 887 (2102)
T PLN03200 851 AIEILS---RLCRDQPV-VLGDLIANASKCISSLADRIINS 887 (2102)
T ss_pred HHHHHH---HHhccChh-HHHHHHhcccchHHHHHHHHhhc
Confidence 999998 55666522 2232 2445567777777654
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-08 Score=133.47 Aligned_cols=564 Identities=18% Similarity=0.195 Sum_probs=345.9
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh-hHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChh
Q 000146 441 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 519 (2052)
Q Consensus 441 ~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~-~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~ 519 (2052)
..+...+...+.+-||..|+..+-||-.+++.+++ ....-.+++|..++...|.|.+.-+.+-|.+.++.++.+-+...
T Consensus 817 ~~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~ 896 (1702)
T KOG0915|consen 817 TIILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSL 896 (1702)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchh
Confidence 34445556677789999999999999999998762 23334568899999999999999999999999998887755432
Q ss_pred HHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCC
Q 000146 520 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 599 (2052)
Q Consensus 520 ~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~ 599 (2052)
-..+.+.| ++...+|.. ....+. . ...-.+.++. |+.|
T Consensus 897 k~~LV~sL-------~~tl~~Gkr-------~~~~vs------------~--eTelFq~G~L-g~Tp------------- 934 (1702)
T KOG0915|consen 897 KKSLVDSL-------VNTLTGGKR-------KAIKVS------------E--ETELFQEGTL-GKTP------------- 934 (1702)
T ss_pred HHHHHHHH-------HHHHhcccc-------ccceec------------c--chhcccCCcC-CCCC-------------
Confidence 12222222 111111110 000000 0 0000100100 0000
Q ss_pred CCCCCCCCCCCCcCCcCCCCCCCCCCCCC-CHHHHHHHhhccCcHHHHHhhh-----cCCHHHHHHHHHHHHHHHHhc-c
Q 000146 600 KPSAKKDGSGKQETSKLTEAPEDVEPSEM-SLEEIESRLGSLIPADTVGQLK-----SAVWKERLEAISSLRQQVEAV-Q 672 (2052)
Q Consensus 600 k~~~~~~~~~~~~~s~~~~~~~~~~~~~~-s~ee~e~~~~~ll~~~l~~~L~-----s~~Wk~Rl~ale~L~~~v~~~-~ 672 (2052)
. .+.+ +.-|+...++++-.|+++.++. +..|.-|.-|.-.+..+.+.. .
T Consensus 935 ------~------------------Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~ 990 (1702)
T KOG0915|consen 935 ------D------------------GGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGE 990 (1702)
T ss_pred ------C------------------CCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHH
Confidence 0 1122 5689999999999999987654 367999999999999887663 3
Q ss_pred ccchHHH-HHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhch--hhhHHHHHHHHHHH
Q 000146 673 NLDQSVE-ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFS 749 (2052)
Q Consensus 673 ~~~~~~~-~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~--K~r~~a~e~L~~l~ 749 (2052)
...+... .+-|..+. --|.+..|++.+-++|..++.........++..++..|+..+++. ++|+.+.-+|..+.
T Consensus 991 kl~p~l~kLIPrLyRY---~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl 1067 (1702)
T KOG0915|consen 991 KLEPYLKKLIPRLYRY---QYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLL 1067 (1702)
T ss_pred hhhhHHHHhhHHHhhh---ccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 3333322 22222221 258999999999999999998755667888999999999999996 79999988888877
Q ss_pred hhhChhH-------HHHHHHHHHhhCCCHHHHH---HHHHHHHHHHHHhCCC--CCC----hHhHHHHHHhhCCCCCcHH
Q 000146 750 EAVGPGF-------IFERLYKIMKDHKNPKVLS---EGILWMVSAVEDFGVS--HLK----LKDLIDFCKDTGLQSSAAA 813 (2052)
Q Consensus 750 E~~~~~~-------Vl~~L~~~l~~~KnpKv~~---e~L~~L~~~i~~fG~~--~l~----~k~li~~l~~~gL~~~n~~ 813 (2052)
..-+.+. ++..+++.+.+.|. -||. .++..|++++-..+-. +.. +..+++++..-|.-++-++
T Consensus 1068 ~g~~~~~~~e~lpelw~~~fRvmDDIKE-sVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~e 1146 (1702)
T KOG0915|consen 1068 QGRPFDQVKEKLPELWEAAFRVMDDIKE-SVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNE 1146 (1702)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHH
Confidence 7655443 34445555433232 2332 3445566655443321 112 2346677654466699999
Q ss_pred HHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHH-hcCCCCCC------CCCccccccccccCCC-CCCCCCCCC
Q 000146 814 TRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEY-EKNPFEGT------VVPKKTVRASESTSSV-SSGGSDGLP 885 (2052)
Q Consensus 814 VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~ef-eK~~~~~~------p~p~r~~r~~~~~~~~-~~~~~d~lp 885 (2052)
||..++.++..|-++.|..+++|+.+|.|.++..+..-= ..+.+-.. .......|.+..+.+. -...++.++
T Consensus 1147 vr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~ 1226 (1702)
T KOG0915|consen 1147 VRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCIN 1226 (1702)
T ss_pred HHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHH
Confidence 999999999999999999999999999998876654210 00000000 0000011111111000 000112333
Q ss_pred cccc--cccccHHHHhhcCCC-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 000146 886 REDI--SGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVA 962 (2052)
Q Consensus 886 r~dI--s~~i~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la 962 (2052)
-+|+ ..++.|.+.+.+... .--.|..+..-+--+.......++|.. |.++.+|...+.|-|..++..-...++.++
T Consensus 1227 ~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~s-gKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1227 YIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYS-GKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred hhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcch-hHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 3343 355666666665443 444566666666555555567788876 999999999999999999999999999999
Q ss_pred HHhCh-hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhHHHHHHHHhcC-ccChhHHHHHHHHHHH
Q 000146 963 SAMGP-AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMVPYVTTALTDA-KLGAEGRKDLFDWLSK 1038 (2052)
Q Consensus 963 ~alg~-~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~--~l~~ll~~l~~~L~~~-k~np~~R~~~l~~L~~ 1038 (2052)
..-.+ .+.++++.++..++....+.+.........-.+...+.. ....++|.+.=+.... +-+..++.++|
T Consensus 1306 k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW----- 1380 (1702)
T KOG0915|consen 1306 KFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEMLKNYASAILPLIFLAMHEEEKANQELWNDVW----- 1380 (1702)
T ss_pred hcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHH-----
Confidence 98877 678888888888887777766332222222111111111 2467888655444321 21223333332
Q ss_pred HhccCCCCC-----chhhhHHHH-HhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1039 QLTGLSGFP-----DAAHLLKPA-SIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1039 ~l~~~~~~~-----~~~~ll~pl-~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
.+..+... ....++.++ ...+++..+.+|+.+..++..+...
T Consensus 1381 -~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1381 -AELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred -HHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence 22222221 123344443 3456888899999988888766533
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-08 Score=121.85 Aligned_cols=191 Identities=19% Similarity=0.211 Sum_probs=139.4
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChh---------h
Q 000146 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA---------V 969 (2052)
Q Consensus 899 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~---------~ 969 (2052)
-.+.++--|+-...+..++.|+..+...+.+..+--+.--|...|+..|+.++..|-+++|.|+.+.|+. +
T Consensus 695 PILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnL 774 (975)
T COG5181 695 PILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNL 774 (975)
T ss_pred HhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcc
Confidence 3456666777788888899888766555554434445556677778889999999999999999999974 0
Q ss_pred ---HHhh-----------------hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCc
Q 000146 970 ---EKSS-----------------KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAK 1023 (2052)
Q Consensus 970 ---~~~~-----------------~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~k 1023 (2052)
+++. -.++|.++.-+.-...+|.+-...++..+.+.+| .-.+.|.+.++|.+.
T Consensus 775 kvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDr- 853 (975)
T COG5181 775 KVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDR- 853 (975)
T ss_pred hHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhccc-
Confidence 0110 1356677777777777888888888888887776 234566777777765
Q ss_pred cChhHHHHHHHHHHHHhccCCCCCc---hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000146 1024 LGAEGRKDLFDWLSKQLTGLSGFPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1091 (2052)
Q Consensus 1024 ~np~~R~~~l~~L~~~l~~~~~~~~---~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l 1091 (2052)
+|.-|+.+...+....-+++...+ ...++.-+...+-|.++.|-.+-.+++..|..++|...|.+++
T Consensus 854 -D~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv 923 (975)
T COG5181 854 -DPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYV 923 (975)
T ss_pred -chHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 577788888777766555544322 2345555777889999999999999999999999999999886
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.6e-07 Score=113.59 Aligned_cols=586 Identities=15% Similarity=0.157 Sum_probs=338.6
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHhhhcchh--hhhhHHHHHHH
Q 000146 339 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSG--SSRFLLPVLLE 412 (2052)
Q Consensus 339 keR~eaL~~L~~L~~--~~ki~~~dy~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~--~~~~llp~LL~ 412 (2052)
--|...|++|.-++. .|......|.+++-++..... +++..|+..|.+|+-.--.-.+..|.. ....++....+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE 224 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE 224 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee
Confidence 456778888877764 243333456666666665554 888888999988876554444556753 35568888899
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc--------------
Q 000146 413 KLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS-------------- 473 (2052)
Q Consensus 413 klkdkK~~V~~aa~~aL~ai~~~~~~~l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~-------------- 473 (2052)
..--....|+.++..||..|+.-+...+ +.++..-+.++++.|..|..++.+|-..+.+.-
T Consensus 225 atq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~ 304 (859)
T KOG1241|consen 225 ATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQG 304 (859)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9988999999999999999987411222 335555567899999999999999988655431
Q ss_pred -Ch--hHHH-HhhhhHHHHHHHhhc-------CCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcC
Q 000146 474 -SK--AAVL-KVHKDYVPICMECLN-------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 542 (2052)
Q Consensus 474 -~~--~~l~-~~l~~l~p~l~k~l~-------Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~ 542 (2052)
++ ..|. ..++.++|.|.+.|. |-+=.+-.+|--||..+..++|+..+++.+
T Consensus 305 ~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl------------------ 366 (859)
T KOG1241|consen 305 LPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVL------------------ 366 (859)
T ss_pred CCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhH------------------
Confidence 11 1111 234567777777772 222346677777888888877765332211
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCC
Q 000146 543 GGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPED 622 (2052)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~ 622 (2052)
T Consensus 367 -------------------------------------------------------------------------------- 366 (859)
T KOG1241|consen 367 -------------------------------------------------------------------------------- 366 (859)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc--hHHHHHHHHHhcCCCCcccHHHHHH
Q 000146 623 VEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD--QSVEILVRLVCMLPGWSEKNVQVQQ 700 (2052)
Q Consensus 623 ~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~--~~~~~Lv~~L~~~pg~~DsN~qV~~ 700 (2052)
+=+.+.+.+.+|+.|..|+-.+..++.+.++.. ....-.+..+.. -..|++..|..
T Consensus 367 --------------------~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~--lm~D~sl~Vkd 424 (859)
T KOG1241|consen 367 --------------------PFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIIN--LMSDPSLWVKD 424 (859)
T ss_pred --------------------HHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHH--HhcCchhhhcc
Confidence 112235667799999999999998887743321 000000000000 02344444433
Q ss_pred HHHHHHHHHHHHcCC--CchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHH
Q 000146 701 QVIEVINYLAATATK--FPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGI 778 (2052)
Q Consensus 701 ~~Le~l~~l~~~~~~--~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L 778 (2052)
..--.+..+++.++. .........++.+++-+-| .|+|...++
T Consensus 425 TaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-----------------------------------ePrva~N~C 469 (859)
T KOG1241|consen 425 TAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-----------------------------------EPRVASNVC 469 (859)
T ss_pred hHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-----------------------------------CchHHHHHH
Confidence 332233333322211 1111222233333333333 344443333
Q ss_pred HHHHHHH---HHhCCC----CC-C--hHhHHHHHHhh-CCCC-CcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHH
Q 000146 779 LWMVSAV---EDFGVS----HL-K--LKDLIDFCKDT-GLQS-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 846 (2052)
Q Consensus 779 ~~L~~~i---~~fG~~----~l-~--~k~li~~l~~~-gL~~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~ 846 (2052)
-.+..+. .+-+.. .. + ...++.-+.+. -..+ ...+.|.+|...|++|-++...+......++-+.+++
T Consensus 470 WAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~ 549 (859)
T KOG1241|consen 470 WAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILE 549 (859)
T ss_pred HHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 2222222 221111 12 1 22344433321 0112 3357888888888888888877766666666666666
Q ss_pred HHHHHHh--cCCCCCCCCCccc-ccccccc-----CCCC-CCCCCCCCcccccccccHHHHhhcCCC-ChHHHHHHHHHH
Q 000146 847 ALDAEYE--KNPFEGTVVPKKT-VRASEST-----SSVS-SGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAV 916 (2052)
Q Consensus 847 ~Le~efe--K~~~~~~p~p~r~-~r~~~~~-----~~~~-~~~~d~lpr~dIs~~i~~~ll~~l~d~-~Wk~R~eale~L 916 (2052)
.|+.-++ .... ..|. ...=++. ++.- --+. ..-.+++.|-..|+..++.+ .--+-.+|+-++
T Consensus 550 kl~q~i~~~~l~~-----~dr~q~~eLQs~Lc~~Lq~i~rk~~~---~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV 621 (859)
T KOG1241|consen 550 KLDQTISSQILSL-----ADRAQLNELQSLLCNTLQSIIRKVGS---DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAV 621 (859)
T ss_pred HHHHHHHHHhccH-----hhHHHHHHHHHHHHHHHHHHHHHccc---cchhHHHHHHHHHHHHHcCCccccchHHHHHHH
Confidence 6665554 1110 0000 0000000 0000 0000 11133455666778878773 445677888888
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcH--HHHH
Q 000146 917 NKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK--HMRE 993 (2052)
Q Consensus 917 ~~ll~~a~~~I~~~~~~eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~--~VR~ 993 (2052)
..+++..+++.... ...+.+.|..-| +-....|...|+.+++.|+.+|+.+|.+|...++..++++|....- .|.-
T Consensus 622 ~tl~~~Lg~~F~ky-m~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP 700 (859)
T KOG1241|consen 622 STLAESLGKGFAKY-MPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKP 700 (859)
T ss_pred HHHHHHHhHhHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccc
Confidence 88887533322222 134455555555 4456889999999999999999999999999999999999997654 4677
Q ss_pred HHHHHHHHHHHhcC--chhhHHHHHHHHhcCc---cC----------hhHHHHHHHHHHHHhccCCCC---CchhhhHHH
Q 000146 994 CTLTVLDAWLAAVH--LDKMVPYVTTALTDAK---LG----------AEGRKDLFDWLSKQLTGLSGF---PDAAHLLKP 1055 (2052)
Q Consensus 994 aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k---~n----------p~~R~~~l~~L~~~l~~~~~~---~~~~~ll~p 1055 (2052)
+...+.+.|+-.+| .+..+..+...|+... .. -++|..+++.-.-.+...... ..+.+.+++
T Consensus 701 ~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~ 780 (859)
T KOG1241|consen 701 AILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPH 780 (859)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHH
Confidence 77888888888887 3455665555554211 01 137888777766666655532 223344455
Q ss_pred HHhh---c--CCCC-HHHHHHHHHHHHHHHHHcChhHHH
Q 000146 1056 ASIA---M--TDKS-SDVRKAAEACIVEILRAGGQETIE 1088 (2052)
Q Consensus 1056 l~~~---L--~D~~-~dVRkaA~~~L~~l~~~~G~e~~~ 1088 (2052)
++.- + ++.+ ..+-.+|.-.++-+...+|.+...
T Consensus 781 I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~~~ 819 (859)
T KOG1241|consen 781 IISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGVIK 819 (859)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccchhh
Confidence 4443 2 3333 566677778888899999976544
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.3e-05 Score=99.53 Aligned_cols=730 Identities=15% Similarity=0.143 Sum_probs=401.8
Q ss_pred HHHHH-HhhcCCChhHHHHHHHHHHHHHhh--hhhhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcChHHHHh
Q 000146 134 CDAIA-AKCLTGRPKTVEKAQAVFMLWVEL--EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILK 210 (2052)
Q Consensus 134 i~~Li-eK~L~~r~~tk~~A~~~~l~~~e~--~~~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~ 210 (2052)
+.+|+ ...|.+|+..+.. ++.--|..+ +.-+.|=.-++..+..--|.....+-+++..+-. .-...-....+++
T Consensus 56 ~AGL~LKN~L~akd~~~k~--~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~-~ElP~n~wp~li~ 132 (859)
T KOG1241|consen 56 AAGLQLKNSLTAKDPERKQ--QYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIAC-IELPQNQWPELIV 132 (859)
T ss_pred HHhHHHhhhhccCCHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHH-hhCchhhCHHHHH
Confidence 34443 4456655544432 223333333 2234555566677776666666655555554332 1111112345677
Q ss_pred hhhhhhCCCCh-hHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHH-HHHHHHhccCCCCCCccchhhhhHhh--hh
Q 000146 211 MLPELFDHQDQ-NVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKE-LEVELVNVSGTARPTRKIRAEQDKEL--GQ 286 (2052)
Q Consensus 211 ~l~~ll~~~dk-~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlke-Le~~f~~~~~~~~p~R~~rs~~~~~~--~~ 286 (2052)
.|..-..+..+ +||+.+.+.++-++..+.++.+... -.+ |.+...-... .-|..-+|-...... ..
T Consensus 133 ~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~---------sN~iLtaIv~gmrk-~e~s~~vRLaa~~aL~nsL 202 (859)
T KOG1241|consen 133 TLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQ---------SNDILTAIVQGMRK-EETSAAVRLAALNALYNSL 202 (859)
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHH---------HhHHHHHHHhhccc-cCCchhHHHHHHHHHHHHH
Confidence 77766666554 5999999999999988865422111 111 1111111100 011111121111000 00
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcC--CCCCCCChHH
Q 000146 287 ELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST--KRIAPGDFTE 364 (2052)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~--~ki~~~dy~~ 364 (2052)
+-...+ - ..+. +.+++= .-..+.-.+.+=+.|.+|+..|.+|..- ..+.+-.-..
T Consensus 203 ef~~~n---F---------~~E~-------ern~iM----qvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~a 259 (859)
T KOG1241|consen 203 EFTKAN---F---------NNEM-------ERNYIM----QVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQA 259 (859)
T ss_pred HHHHHh---h---------ccHh-------hhceee----eeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0 0000 011100 1122333567778899999999988742 1111111123
Q ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHH-------Hhhhcchhh------------hhhHHHHHHHHhccCc-------
Q 000146 365 VCRTLKKLITDVNIAVAVEAIQAIGNLAR-------GLRTHFSGS------------SRFLLPVLLEKLKEKK------- 418 (2052)
Q Consensus 365 l~~~L~k~l~D~N~~V~~~A~~~l~~La~-------~L~~~f~~~------------~~~llp~LL~klkdkK------- 418 (2052)
++..-.+.++..|-.|...|+.....+|. ..+..++.+ +..++|.||+.+-...
T Consensus 260 lfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~Dd 339 (859)
T KOG1241|consen 260 LFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDD 339 (859)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccccc
Confidence 55555566777888888888776664442 122222222 4488999999884321
Q ss_pred HHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCC
Q 000146 419 PTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG 496 (2052)
Q Consensus 419 ~~V~~aa~~aL~ai~~~~~--~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds 496 (2052)
=++..|+..||.-+... | .=++-+++-|.+.+++.+|.-|..+.-.+..++..-.+..+.++....+|.+...+.|+
T Consensus 340 Wnp~kAAg~CL~l~A~~-~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~ 418 (859)
T KOG1241|consen 340 WNPAKAAGVCLMLFAQC-VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP 418 (859)
T ss_pred CcHHHHHHHHHHHHHHH-hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc
Confidence 25788999999988774 2 11345555666677788999999999999998887666777788899999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhh
Q 000146 497 TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 576 (2052)
Q Consensus 497 ~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 576 (2052)
.--||+.+.-+|+.+...+.+...+... -..++.-.+++..+. |..+... .-.. .+
T Consensus 419 sl~VkdTaAwtlgrI~d~l~e~~~n~~~------l~~~l~~l~~gL~De-Prva~N~---------------CWAf--~~ 474 (859)
T KOG1241|consen 419 SLWVKDTAAWTLGRIADFLPEAIINQEL------LQSKLSALLEGLNDE-PRVASNV---------------CWAF--IS 474 (859)
T ss_pred hhhhcchHHHHHHHHHhhchhhcccHhh------hhHHHHHHHHHhhhC-chHHHHH---------------HHHH--HH
Confidence 9999999999999999888754332211 112333333332111 0000000 0000 00
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHH
Q 000146 577 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 656 (2052)
Q Consensus 577 ~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~ 656 (2052)
. ...-+- .++ +....+ +. +
T Consensus 475 L----aea~~e--------A~~---------------s~~qt~-----~~--t--------------------------- 493 (859)
T KOG1241|consen 475 L----AEAAYE--------AAV---------------SNGQTD-----PA--T--------------------------- 493 (859)
T ss_pred H----HHHHHH--------hcc---------------CCCCCC-----cc--c---------------------------
Confidence 0 000000 000 000000 00 0
Q ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhcC---CCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhh
Q 000146 657 RLEAISSLRQQVEAVQNLDQSVEILVRLVCML---PGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 733 (2052)
Q Consensus 657 Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~---pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg 733 (2052)
+..+.++.-|.+. +.-.++| ....++++|..+++.+++-....+..+.+.+.+||.
T Consensus 494 -------------------~~y~~ii~~Ll~~tdr~dgnqsN--LR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~ 552 (859)
T KOG1241|consen 494 -------------------PFYEAIIGSLLKVTDRADGNQSN--LRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLD 552 (859)
T ss_pred -------------------hhHHHHHHHHHhhccccccchhh--HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 0011111211111 1123444 556788888888887543222233333344444433
Q ss_pred chhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC-hHhHHHHHHhhCCCC-Cc
Q 000146 734 DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS-SA 811 (2052)
Q Consensus 734 d~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~-~n 811 (2052)
.. +. .+++.....+.--.++.-.+.+|..++..+|..... ...++..+... ++. .+
T Consensus 553 q~---------i~------------~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri-~~s~~s 610 (859)
T KOG1241|consen 553 QT---------IS------------SQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRI-FESKRS 610 (859)
T ss_pred HH---------HH------------HHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH-HcCCcc
Confidence 21 11 111111111112223444566777788888874332 34566666666 777 55
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccc
Q 000146 812 AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 891 (2052)
Q Consensus 812 ~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~ 891 (2052)
..|-+.|.-.+++|...+|..|..|+..++|-+...+...-
T Consensus 611 ~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~--------------------------------------- 651 (859)
T KOG1241|consen 611 AVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ--------------------------------------- 651 (859)
T ss_pred ccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch---------------------------------------
Confidence 67888999999999999999999998887777665553211
Q ss_pred cccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHhChhh
Q 000146 892 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAV 969 (2052)
Q Consensus 892 ~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds--N~~V~~~Al~~l~~la~alg~~~ 969 (2052)
++++-..++-.++++...-...|.|.. .+++..|.+.|+.. +.+|.-.-+.+.+.||-++|.+|
T Consensus 652 -------------e~qVc~~aVglVgdl~raL~~~i~py~-d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F 717 (859)
T KOG1241|consen 652 -------------EYQVCAAAVGLVGDLARALEDDILPYC-DELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADF 717 (859)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhH
Confidence 223344555566666553334455543 78889999988664 47788888999999999999999
Q ss_pred HHhhhHHHHHHHHHh---CCC--------cHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHh----cCccChh
Q 000146 970 EKSSKGVLSDILKCL---GDN--------KKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALT----DAKLGAE 1027 (2052)
Q Consensus 970 ~~~~~~llp~ll~~l---~D~--------k~~VR~aa~~aL~~i~~~~~-------l~~ll~~l~~~L~----~~k~np~ 1027 (2052)
++|+..+++.+-..- .|. -..+|.++.++-..++.-++ +..++|.|...+. ++..+..
T Consensus 718 ~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~ 797 (859)
T KOG1241|consen 718 EPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEA 797 (859)
T ss_pred HHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchH
Confidence 999999999887655 232 12478888888888877655 2344555555543 2221223
Q ss_pred HHHHHHHHHHHHhccCCCC---C-chhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1028 GRKDLFDWLSKQLTGLSGF---P-DAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1028 ~R~~~l~~L~~~l~~~~~~---~-~~~~ll~p-l~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
+-..+++.+......++.. . ...+++.- |..+..-+....|+.|.-+...+.++
T Consensus 798 ~~~~a~GlIgDL~~~fg~~~~~~~~~~~~i~~~L~~~~k~~~~~tK~~A~wa~e~ikr~ 856 (859)
T KOG1241|consen 798 LHAAALGLIGDLATMFGKGVIKLFLDEDWIKDFLNEGRKSSTQKTKDLARWATEEIKRQ 856 (859)
T ss_pred HHHHHHHHHHHHHHHcccchhhhhcchHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 4456666666655555532 1 12345555 44555555666777777666655544
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-07 Score=115.20 Aligned_cols=379 Identities=17% Similarity=0.207 Sum_probs=262.9
Q ss_pred cHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchH--HHHHHHHHhcCC-CCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000146 642 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLP-GWSEKNVQVQQQVIEVINYLAATATKFPK 718 (2052)
Q Consensus 642 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~--~~~Lv~~L~~~p-g~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 718 (2052)
++.+.++|.||-+..|.+|.-++.+++++.-..+.. ..-++..+...- .=.+.|. ...+|-.+...+-.++.-..
T Consensus 2 ~~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~--rkGgLiGlAA~~iaLg~~~~ 79 (675)
T KOG0212|consen 2 SASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANM--RKGGLIGLAAVAIALGIKDA 79 (675)
T ss_pred chHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCccccc--ccchHHHHHHHHHHhccccH
Confidence 456789999999999999999999999883222111 223344332110 0011221 12344344433333343333
Q ss_pred hhHHHHHHHHHHhhhch--hhhHHHHHHHHHHHhhhChh------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCC
Q 000146 719 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV 790 (2052)
Q Consensus 719 ~~~~~il~~LveKlgd~--K~r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~ 790 (2052)
.+...+++.++..++|. ++|--|.+.|..++.....+ .++..+++.. .....-|+ +..+.+..++++.-.
T Consensus 80 ~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kls-aDsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 80 GYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLS-ADSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHh-cCCccccc-cHHHHHHHHHHHhcc
Confidence 47888999999999884 78999999999999976644 3455555543 33333343 334444455554432
Q ss_pred ---CCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccc
Q 000146 791 ---SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 867 (2052)
Q Consensus 791 ---~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~ 867 (2052)
..+++..+++.+..- +-..||.+|..-..-+-.|+..-+-.+-+|+.+
T Consensus 158 e~~~tFsL~~~ipLL~er-iy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~---------------------------- 208 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRER-IYVINPMTRQFLVSWLYVLDSVPDLEMISYLPS---------------------------- 208 (675)
T ss_pred ccccccCHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHhcCCcHHHHhcchH----------------------------
Confidence 257888999999987 888999999988877776665444333333322
Q ss_pred ccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCC--ChhhHHHHHHhhhcc
Q 000146 868 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA--GTGELFGGLRGRLYD 945 (2052)
Q Consensus 868 r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~--~~~eL~~aL~~rL~D 945 (2052)
+.+.++..++|..-.+|.-.=..+.+.+.+- +-.|. +|++.+..|...+..
T Consensus 209 -------------------------~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI--~s~P~s~d~~~~i~vlv~~l~s 261 (675)
T KOG0212|consen 209 -------------------------LLDGLFNMLSDSSDEVRTLTDTLLSEFLAEI--RSSPSSMDYDDMINVLVPHLQS 261 (675)
T ss_pred -------------------------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH--hcCccccCcccchhhccccccC
Confidence 3345677777777777765555555555431 11222 478999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcC---------chhhHHHH
Q 000146 946 SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVH---------LDKMVPYV 1015 (2052)
Q Consensus 946 sN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~-~VR~aa~~aL~~i~~~~~---------l~~ll~~l 1015 (2052)
++.-++..|+.+|.++.+--|+++-.|...++..++.++.|+.. .++..+...-+.+..-++ +..+++.+
T Consensus 262 s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 262 SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999998877 576666554434443332 34778888
Q ss_pred HHHHhcCccChhHHHHHHHHHHHHhccCCCC--CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Q 000146 1016 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1082 (2052)
Q Consensus 1016 ~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~ 1082 (2052)
...+.+. +.+.|.++++|+.....+.+.. .+..++...+++.|.|++.+|-..+-..+..+...-
T Consensus 342 ~~~l~~~--~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~ 408 (675)
T KOG0212|consen 342 TKYLSDD--REETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS 408 (675)
T ss_pred HHHhhcc--hHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc
Confidence 8888876 4788999999999888877763 355677777999999999999999888887776443
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.7e-07 Score=110.78 Aligned_cols=406 Identities=14% Similarity=0.168 Sum_probs=282.0
Q ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhH
Q 000146 756 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 834 (2052)
Q Consensus 756 ~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~ 834 (2052)
.++++++.-.....+.-.|.+.|..+..+.-..|.+.. -++.+++-+..+ +++++..||..|-+.+-.+.+.....+.
T Consensus 42 k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c-f~D~d~~vRyyACEsLYNiaKv~k~~v~ 120 (675)
T KOG0212|consen 42 KVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC-FSDQDSQVRYYACESLYNIAKVAKGEVL 120 (675)
T ss_pred HHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh-ccCccceeeeHhHHHHHHHHHHhccCcc
Confidence 34555554333333333345888888888777777632 245566666664 9999999999998888777777666666
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHH
Q 000146 835 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 914 (2052)
Q Consensus 835 ~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale 914 (2052)
.|++.+-.++. |+ ..|.+-.+| .|.+
T Consensus 121 ~~Fn~iFdvL~--------kl---------------------------------------------saDsd~~V~-~~ae 146 (675)
T KOG0212|consen 121 VYFNEIFDVLC--------KL---------------------------------------------SADSDQNVR-GGAE 146 (675)
T ss_pred cchHHHHHHHH--------HH---------------------------------------------hcCCccccc-cHHH
Confidence 66544322221 11 111111111 1223
Q ss_pred HHHHHHHhcc-ccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHH
Q 000146 915 AVNKILEEAN-KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRE 993 (2052)
Q Consensus 915 ~L~~ll~~a~-~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~ 993 (2052)
.+..++.+.. ..-..-.+.++++.|+.|+.+.|...++--+.+|..+-..-+-+|-.|+..+++++++.|+|+...||+
T Consensus 147 LLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~ 226 (675)
T KOG0212|consen 147 LLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRT 226 (675)
T ss_pred HHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHH
Confidence 3333332210 000011258999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-------CchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC--CchhhhHHHHHhhcCCCC
Q 000146 994 CTLTVLDAWLAAV-------HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKS 1064 (2052)
Q Consensus 994 aa~~aL~~i~~~~-------~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~ 1064 (2052)
-+..+|..+...+ ..+.+++.+..-+.++ +|..+.-++.|+.+.+.-.+.. .....++..++.|+.|..
T Consensus 227 ~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e 304 (675)
T KOG0212|consen 227 LTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTE 304 (675)
T ss_pred HHHHHHHHHHHHHhcCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCc
Confidence 9999999888765 2456777777777765 6899999999999988765542 344566777889998877
Q ss_pred H-HHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000146 1065 S-DVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 1143 (2052)
Q Consensus 1065 ~-dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 1143 (2052)
. .++..|+..-..++..++.+....-
T Consensus 305 ~~~i~~~a~~~n~~l~~l~s~~~~~~~----------------------------------------------------- 331 (675)
T KOG0212|consen 305 EMSIKEYAQMVNGLLLKLVSSERLKEE----------------------------------------------------- 331 (675)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhhccc-----------------------------------------------------
Confidence 7 5888887655555555554221100
Q ss_pred cCCCCCCCCCCCcccccchhhhhhhhccccCCCchHHHhhhhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCH
Q 000146 1144 SRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDF 1223 (2052)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~ 1223 (2052)
.+-+ .-+| -+...+++..-
T Consensus 332 ---------------------id~~----------------------------~ii~------------vl~~~l~~~~~ 350 (675)
T KOG0212|consen 332 ---------------------IDYG----------------------------SIIE------------VLTKYLSDDRE 350 (675)
T ss_pred ---------------------cchH----------------------------HHHH------------HHHHHhhcchH
Confidence 0000 0011 13334455555
Q ss_pred HHHHHHHHHHHHhcCcChhhhHHHHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHh
Q 000146 1224 KKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEK 1303 (2052)
Q Consensus 1224 k~~l~al~~L~~~l~~~~~~~i~~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K 1303 (2052)
..|+.+++=+.-.....+.+++.+.|-+|-.+..-+.|+.-.|+.+.|+.+..+. .+.+.. --..|+-.|++.
T Consensus 351 ~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~---~s~~~~----~~~~fl~sLL~~ 423 (675)
T KOG0212|consen 351 ETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASIC---SSSNSP----NLRKFLLSLLEM 423 (675)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHh---cCcccc----cHHHHHHHHHHH
Confidence 6788888888888888888888989999999988999999999999999999764 333321 126788888888
Q ss_pred hCCChHHHHHHHHHHHHHHhhcCCccccHHHHHhhh
Q 000146 1304 SGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGL 1339 (2052)
Q Consensus 1304 ~Gd~k~~vr~~v~~il~~~~~v~p~skvf~~l~~gl 1339 (2052)
.-+-+--++.+--=|++++|...-+..||..+.+-+
T Consensus 424 f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~IL 459 (675)
T KOG0212|consen 424 FKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADIL 459 (675)
T ss_pred HhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHH
Confidence 877666677777778999999999999998865433
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-06 Score=103.20 Aligned_cols=643 Identities=16% Similarity=0.204 Sum_probs=355.3
Q ss_pred hccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh-h
Q 000146 100 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAI-K 177 (2052)
Q Consensus 100 v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~-r~~tk~~A~~~~l~~~e~~~~~~v~e~Ll~~l-~ 177 (2052)
+-|....+.-.|-+++..++..+|-.+. + ..+. --+.+ .+-+|+-.-.+.-.++..-..+.++..|.... +
T Consensus 255 lided~~~r~~g~eii~nL~~~~Gl~~~--v-s~mr----pDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~S 327 (975)
T COG5181 255 LIDEDLKRRCMGREIILNLVYRCGLGFS--V-SSMR----PDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGS 327 (975)
T ss_pred ccCccHHHhcccHHHHHHHHHHhcccee--e-eecc----CCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcC
Confidence 4466666677777777777777654110 0 0000 00111 22233322222222221111233333332222 4
Q ss_pred ccChhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchh---hHHH---Hhh
Q 000146 178 NKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV---KTIL---FEK 250 (2052)
Q Consensus 178 ~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l---~~~L---~~~ 250 (2052)
.|.|+.+..|+.++.++..-.|..+++ ++++++.+.+++.|...-||=.+...+-.+++..||=-+ ...| .++
T Consensus 328 rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g 407 (975)
T COG5181 328 RKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEG 407 (975)
T ss_pred ccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 479999999999999999999998876 899999999999999999999999999999998886222 1111 122
Q ss_pred ChHHHHHHHHHHHHhccCCCCCC---c----cchhhhhHhhhhcccccCCCCCCCCCC------CCCCCCCCCCCCCCCc
Q 000146 251 MRDTMKKELEVELVNVSGTARPT---R----KIRAEQDKELGQELISEDVGPGPSEES------TADVPPEIDEYELVDP 317 (2052)
Q Consensus 251 Lkp~qlkeLe~~f~~~~~~~~p~---R----~~rs~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~iD~~dl~~~ 317 (2052)
....--++|-..+..+ |-.-|- . ++|....- .-.+-.+ + ++.+-.. -=+..+.++|+-+.+.
T Consensus 408 ~~~hrgk~l~sfLkA~-g~iiplm~peYa~h~tre~m~i-v~ref~s--p-deemkk~~l~v~~~C~~v~~~tp~~lr~~ 482 (975)
T COG5181 408 ASQHRGKELVSFLKAM-GFIIPLMSPEYACHDTREHMEI-VFREFKS--P-DEEMKKDLLVVERICDKVGTDTPWKLRDQ 482 (975)
T ss_pred HHhcCCchHHHHHHHh-ccccccCChHhhhhhHHHHHHH-HHHHhCC--c-hhhcchhHHHHHHHHhccCCCCHHHHHHh
Confidence 2222222333332222 111110 0 11111100 0000000 0 0000000 0001122344323221
Q ss_pred ccccCcCccchhhhhcccCChHHHHHHHHHHHH--------HhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHH
Q 000146 318 VDILTPLEKSGFWEGVKATKWSERKDAVAELTK--------LASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIG 389 (2052)
Q Consensus 318 vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~--------L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~ 389 (2052)
+ . +.|+ +..|.+|.++=..+.+ +++ . +.-..+++.+...++|.--..+..++.++.
T Consensus 483 v------~-pefF----~~fw~rr~A~dr~~~k~v~~ttvilAk--~---~g~~~v~~kil~~~~De~ep~r~m~a~~vs 546 (975)
T COG5181 483 V------S-PEFF----SPFWRRRSAGDRRSYKQVVLTTVILAK--M---GGDPRVSRKILEYYSDEPEPYRKMNAGLVS 546 (975)
T ss_pred h------c-HHhh----chHHHhhhcccccccceeehhHHHHHH--H---cCChHHHHHHHhhccCCcchhhhhhhHHHH
Confidence 1 1 2333 5679888776211111 111 0 112335566666677776666777777777
Q ss_pred HHHHHhh-hcc-hhhhhhHHHHHHHHhccCcHHHH------HHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHH
Q 000146 390 NLARGLR-THF-SGSSRFLLPVLLEKLKEKKPTVA------ESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSL 461 (2052)
Q Consensus 390 ~La~~L~-~~f-~~~~~~llp~LL~klkdkK~~V~------~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~ 461 (2052)
.+...++ .+| ++....++-.++..|.+....+. .++..+++..+ -..+..++..++..|+||.|.+|+.
T Consensus 547 ri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~---kp~l~~ivStiL~~L~~k~p~vR~~ 623 (975)
T COG5181 547 RIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRG---KPHLSMIVSTILKLLRSKPPDVRIR 623 (975)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhcc---CcchHHHHHHHHHHhcCCCccHHHH
Confidence 7777665 346 35667778888888877654321 11122222222 2567899999999999999999999
Q ss_pred HHHHHHHH---HHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHH
Q 000146 462 TLNWVTFC---IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 538 (2052)
Q Consensus 462 ~l~~L~~~---l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~ 538 (2052)
++..+..+ +..|..... +..+--+|...|+.-+|+|-..-..|+-.|..+.|.+.+.|-+.
T Consensus 624 aadl~~sl~~vlk~c~e~~~---l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~------------- 687 (975)
T COG5181 624 AADLMGSLAKVLKACGETKE---LAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPIS------------- 687 (975)
T ss_pred HHHHHHHHHHHHHhcchHHH---HHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchh-------------
Confidence 88776654 344443322 23344556677777777775555555555555444321100000
Q ss_pred HhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCC
Q 000146 539 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTE 618 (2052)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~ 618 (2052)
T Consensus 688 -------------------------------------------------------------------------------- 687 (975)
T COG5181 688 -------------------------------------------------------------------------------- 687 (975)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHH
Q 000146 619 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQV 698 (2052)
Q Consensus 619 ~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV 698 (2052)
+++ +.+...|. .++-+|
T Consensus 688 --------------------~il-P~ltPILr------------------------------------------nkh~Kv 704 (975)
T COG5181 688 --------------------GIL-PSLTPILR------------------------------------------NKHQKV 704 (975)
T ss_pred --------------------hcc-ccccHhhh------------------------------------------hhhHHH
Confidence 000 00111111 122233
Q ss_pred HHHHHHHHHHHHHHcCCC-c-hhhHHHHHHHHHHhhhc-hh-hhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHH
Q 000146 699 QQQVIEVINYLAATATKF-P-KKCVVLCLLGISERVAD-IK-TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVL 774 (2052)
Q Consensus 699 ~~~~Le~l~~l~~~~~~~-~-~~~~~~il~~LveKlgd-~K-~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~ 774 (2052)
....+.++..+..+.+.. + +.|+.. .=.|++-|.. .| +|-.|.+++.-+++++||+-|+..|+..+. ...-..|
T Consensus 705 ~~nti~lvg~I~~~~peyi~~rEWMRI-cfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk-vqeRq~R 782 (975)
T COG5181 705 VANTIALVGTICMNSPEYIGVREWMRI-CFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVLDILLNNLK-VQERQQR 782 (975)
T ss_pred hhhHHHHHHHHHhcCcccCCHHHHHHH-HHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch-HHHHHhh
Confidence 333344444444443332 2 223333 3345665544 23 688999999999999999999999998872 2122222
Q ss_pred HHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhc
Q 000146 775 SEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 854 (2052)
Q Consensus 775 ~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK 854 (2052)
..+--.++-+-+-.|.- .+++.+..- ...++.+|.+...+.++-||.++|..-++|.-.
T Consensus 783 vctsvaI~iVae~cgpf-----sVlP~lm~d-Y~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~--------------- 841 (975)
T COG5181 783 VCTSVAISIVAEYCGPF-----SVLPTLMSD-YETPEANVQNGVLKAMCFMFEYIGQASLDYVYS--------------- 841 (975)
T ss_pred hhhhhhhhhhHhhcCch-----hhHHHHHhc-ccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 22223333333344442 344445443 677899999999999999999999776555422
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh
Q 000146 855 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 934 (2052)
Q Consensus 855 ~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~e 934 (2052)
|+|-+.+.+.|.+---|.-|+.-+..+.-++ +
T Consensus 842 --------------------------------------itPlleDAltDrD~vhRqta~nvI~Hl~Lnc-----~----- 873 (975)
T COG5181 842 --------------------------------------ITPLLEDALTDRDPVHRQTAMNVIRHLVLNC-----P----- 873 (975)
T ss_pred --------------------------------------hhHHHHhhhcccchHHHHHHHHHHHHHhcCC-----C-----
Confidence 4445555566666667888877776665321 1
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHH
Q 000146 935 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY 1014 (2052)
Q Consensus 935 L~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~ 1014 (2052)
|..-+...-.++-.+.-++-|..++|.++..++++.+...+|...++.+
T Consensus 874 -------------------------------gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Y 922 (975)
T COG5181 874 -------------------------------GTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKY 922 (975)
T ss_pred -------------------------------CcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 1111122233344444455688999999999999999999999999999
Q ss_pred HHHHHhcCccChhHHHHHHHHH
Q 000146 1015 VTTALTDAKLGAEGRKDLFDWL 1036 (2052)
Q Consensus 1015 l~~~L~~~k~np~~R~~~l~~L 1036 (2052)
+...|=++ +..+|..-|.-.
T Consensus 923 v~qGLFHP--s~~VRk~ywtvy 942 (975)
T COG5181 923 VQQGLFHP--SSTVRKRYWTVY 942 (975)
T ss_pred HHHhccCc--hHHHHHHHHHHH
Confidence 99999887 356777655443
|
|
| >KOG2956 consensus CLIP-associating protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.4e-08 Score=117.97 Aligned_cols=205 Identities=20% Similarity=0.278 Sum_probs=169.3
Q ss_pred cCChHHHHHHHHHHHHHhcCC--CCCCCChHHHHHHHHHHhcC-cCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000146 335 ATKWSERKDAVAELTKLASTK--RIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 411 (2052)
Q Consensus 335 s~kWkeR~eaL~~L~~L~~~~--ki~~~dy~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 411 (2052)
+..-.+|++|+.+|..+.... .+....|.+|.-.+..++.| .+......|+..|+.|++.-...|..+....+--+|
T Consensus 298 ~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 298 SERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVL 377 (516)
T ss_pred ccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHH
Confidence 458899999999999876322 22335688999999999998 788899999999999999999999999999999999
Q ss_pred HHhccCcH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHH
Q 000146 412 EKLKEKKP-TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICM 490 (2052)
Q Consensus 412 ~klkdkK~-~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~ 490 (2052)
+..+|..+ .++.|...|+..+..+ .++ ..+.-|...+.+-.-+.-..+++.++++++..+...+...+++|+|.++
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~--~P~-~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~i 454 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASH--LPL-QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVI 454 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhh--Cch-hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHH
Confidence 99999876 4566666666666655 333 3333343333333344455778899999999998889999999999999
Q ss_pred HhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcC
Q 000146 491 ECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 542 (2052)
Q Consensus 491 k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~ 542 (2052)
++.+.+...||++|.-||.++...+|++.|.|++.+|...+++.|.=|+.++
T Consensus 455 qay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa 506 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRA 506 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988899999999999999999998864
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.7e-06 Score=108.18 Aligned_cols=562 Identities=17% Similarity=0.133 Sum_probs=323.1
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHH
Q 000146 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLE 412 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~ 412 (2052)
+...+-..|..+...+..+.-..+.... -..+++.+...+ |.+..|...+..-++.+....+ -..|...++|.+..
T Consensus 91 ~~~~di~~r~~~~~~l~~~a~~~~~~~t-r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v~--~~~~~~~ll~~le~ 166 (759)
T KOG0211|consen 91 LSNTDIQLRLNSGRKLSNLALALGVERT-RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDVG--GPEYAHMLLPPLEL 166 (759)
T ss_pred cCchhhhhhhhhhccccchhhhcccchh-hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhcc--chhHHHHhhHHHHh
Confidence 3344556666666666554421111111 456778888887 7777766666555555444322 13467777888777
Q ss_pred HhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHh---hcCCh-HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000146 413 KLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV---KNKVP-LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 488 (2052)
Q Consensus 413 klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L---~~Knp-~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 488 (2052)
..-+....||+++.+++..+... .+=....+.+...+ ...-| +.|.-++..+..+....+...+ -.++.|.
T Consensus 167 l~~~eet~vr~k~ve~l~~v~~~--~~~~~~~~~lv~l~~~l~~~d~~~sr~sacglf~~~~~~~~~~~v---k~elr~~ 241 (759)
T KOG0211|consen 167 LATVEETGVREKAVESLLKVAVG--LPKEKLREHLVPLLKRLATGDWFQSRLSACGLFGKLYVSLPDDAV---KRELRPI 241 (759)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHccchhhhhcchhhhhhhHHhccCCChHHH---HHHHHHH
Confidence 77888889999999999999875 33223333333222 22222 4455566666666555443222 2567788
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCC
Q 000146 489 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEAS 568 (2052)
Q Consensus 489 l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 568 (2052)
......|..+.||.++..-++.+.+.++..... ..+.+..
T Consensus 242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~---s~v~~~~------------------------------------- 281 (759)
T KOG0211|consen 242 VQSLCQDDTPMVRRAVASNLGNIAKVLESEIVK---SEVLPTL------------------------------------- 281 (759)
T ss_pred HHhhccccchhhHHHHHhhhHHHHHHHHHHHHH---hhccHHH-------------------------------------
Confidence 889999999999999999999998888752110 0000000
Q ss_pred cchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHh
Q 000146 569 ESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQ 648 (2052)
Q Consensus 569 ~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~ 648 (2052)
+..
T Consensus 282 -----------------------------------------------------------------------------~~L 284 (759)
T KOG0211|consen 282 -----------------------------------------------------------------------------IQL 284 (759)
T ss_pred -----------------------------------------------------------------------------hhh
Confidence 000
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 000146 649 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGI 728 (2052)
Q Consensus 649 L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~L 728 (2052)
..+..=..|+.|++.+..+..-....+.....+...+.. -..|.+..|.-..-+....+....+. .. .-....+..
T Consensus 285 ~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~--~~~d~~~~v~~~~~~~~~~L~~~~~~-~~-~~~~~~~~~ 360 (759)
T KOG0211|consen 285 LRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQ--AVEDGSWRVSYMVADKFSELSSAVGP-SA-TRTQLVPPV 360 (759)
T ss_pred hhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHH--HhcChhHHHHHHHhhhhhhHHHHhcc-cc-CcccchhhH
Confidence 001111234555555544444322211111111111110 02344444443333333333333222 00 111223444
Q ss_pred HHhhhchh--hhHHHHHHHHHHHhhhC----hhHHHHHHHHHH---hhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHH
Q 000146 729 SERVADIK--TRAHAMKCLTTFSEAVG----PGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 799 (2052)
Q Consensus 729 veKlgd~K--~r~~a~e~L~~l~E~~~----~~~Vl~~L~~~l---~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li 799 (2052)
..-++|.. .|..+..-...+++..+ ++...+.+++.+ ..+.|+.|+......+......+|... .+..+.
T Consensus 361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~-ti~~ll 439 (759)
T KOG0211|consen 361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKER-TISELL 439 (759)
T ss_pred HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCc-CccccC
Confidence 44555543 23333333444444444 333333333322 356677777666666555555555321 234455
Q ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCC
Q 000146 800 DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSG 879 (2052)
Q Consensus 800 ~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~ 879 (2052)
+..... +.+-.+.||..-+..+.. .+.+... -
T Consensus 440 p~~~~~-l~de~~~V~lnli~~ls~---------------------------~~~v~~v------~-------------- 471 (759)
T KOG0211|consen 440 PLLIGN-LKDEDPIVRLNLIDKLSL---------------------------LEEVNDV------I-------------- 471 (759)
T ss_pred hhhhhh-cchhhHHHHHhhHHHHHH---------------------------HHhccCc------c--------------
Confidence 555544 666666666655432211 1111100 0
Q ss_pred CCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHH
Q 000146 880 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLG 959 (2052)
Q Consensus 880 ~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~ 959 (2052)
|.+. ++..+.+.+...-.|.+|++|.+.++.+-.++..-...+.. ..+...+...+.|--..++..|...+.
T Consensus 472 g~~~-----~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~---~~~~~l~~~~l~d~v~~Ir~~aa~~l~ 543 (759)
T KOG0211|consen 472 GIST-----VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFD---EKLAELLRTWLPDHVYSIREAAARNLP 543 (759)
T ss_pred cchh-----hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhh---HHHHHHHHhhhhhhHHHHHHHHHHHhH
Confidence 0000 01112234455556779999999999998888643211111 223444556677877889999999999
Q ss_pred HHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCccChhHHHHHHHH
Q 000146 960 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDW 1035 (2052)
Q Consensus 960 ~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l----~~ll~~l~~~L~~~k~np~~R~~~l~~ 1035 (2052)
.++...|..+ +...++|.++...++..-.+|.+...++..++..+|- ..++|.+.....+. .|.+|-.++..
T Consensus 544 ~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~ 619 (759)
T KOG0211|consen 544 ALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKH 619 (759)
T ss_pred HHHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHH
Confidence 9999999554 4577899999999998888999999999999999984 45666666666665 58999999999
Q ss_pred HHHHhccCCCCCchhhhHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHcChhH
Q 000146 1036 LSKQLTGLSGFPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQET 1086 (2052)
Q Consensus 1036 L~~~l~~~~~~~~~~~ll~pl~~~L-~D~~~dVRkaA~~~L~~l~~~~G~e~ 1086 (2052)
|...+..... +.....+.|+..+| .|.+.|||-.|..++..+..+.-+..
T Consensus 620 L~~i~~~L~~-~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~~~~~ 670 (759)
T KOG0211|consen 620 LPKILKLLDE-SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSRLESS 670 (759)
T ss_pred HHHHHhhcch-HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHhhh
Confidence 9987765543 23456677766655 89999999999999998877665533
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=0.00019 Score=97.17 Aligned_cols=287 Identities=15% Similarity=0.149 Sum_probs=189.6
Q ss_pred hHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCC---CCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchh
Q 000146 167 VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA---KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV 243 (2052)
Q Consensus 167 ~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~---~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l 243 (2052)
.+.+.|..+..+-||..+.+.+-||...++..|. .+...+.|...+..++++.|.=+.+.|..-+.-+|.--+ ..+
T Consensus 818 ~~~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd-~~~ 896 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGD-SSL 896 (1702)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCC-chh
Confidence 3344556677888999999999999999999995 345678899999999999998888888777777776543 323
Q ss_pred hHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCc
Q 000146 244 KTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTP 323 (2052)
Q Consensus 244 ~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~k 323 (2052)
+..| .+.|-+.|-. |. |+.-.-..+.+--. .|.-+. + .....+.
T Consensus 897 k~~L--------V~sL~~tl~~--Gk-------r~~~~vs~eTelFq--~G~Lg~---T-p~Gg~is------------- 940 (1702)
T KOG0915|consen 897 KKSL--------VDSLVNTLTG--GK-------RKAIKVSEETELFQ--EGTLGK---T-PDGGKIS------------- 940 (1702)
T ss_pred HHHH--------HHHHHHHHhc--cc-------cccceeccchhccc--CCcCCC---C-CCCCcch-------------
Confidence 3322 2222222111 21 11000000000000 000000 0 0001111
Q ss_pred CccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000146 324 LEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 402 (2052)
Q Consensus 324 l~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 402 (2052)
. -++|..|++. +. -.+++=.+...-+ .+-=+-...|+--++.+++.-+...+||
T Consensus 941 ----T----------------YKELc~LASd--l~---qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~ 995 (1702)
T KOG0915|consen 941 ----T----------------YKELCNLASD--LG---QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPY 995 (1702)
T ss_pred ----H----------------HHHHHHHHhh--cC---ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhH
Confidence 1 2445555531 00 1122222222222 2211225667777777888778889999
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 403 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~----~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
.+.++|-|...=-|..+.|+.+....-++++... .-.+.+|+++++.+|.+|-|+||+.++..|..+++..+...+
T Consensus 996 l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 996 LKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred HHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence 9999999999999999999988777777766430 123678999999999999999999999999999999888888
Q ss_pred HHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000146 479 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 479 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
.+.++++-..+...++|-+..||++|-.+...+.++.
T Consensus 1076 ~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1076 KEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999988876666553
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00044 Score=92.51 Aligned_cols=657 Identities=14% Similarity=0.163 Sum_probs=360.1
Q ss_pred CCC-CCCCChHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHhhhc-ch-hhhhhHHHHHHHHhccCcHHHHHHHHHH
Q 000146 354 TKR-IAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTH-FS-GSSRFLLPVLLEKLKEKKPTVAESLTQT 428 (2052)
Q Consensus 354 ~~k-i~~~dy~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~-f~-~~~~~llp~LL~klkdkK~~V~~aa~~a 428 (2052)
.|+ +....++++...|..++. .+|-.|...++.|++.+-..-+.. +. +-....+-+++.-.-+++|-||.++..+
T Consensus 82 VPs~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~ 161 (1176)
T KOG1248|consen 82 VPSPVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRG 161 (1176)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 455 444568888888888888 889999999999999887654321 22 3356677788888889999999999999
Q ss_pred HHHHHHhcCCCHHHH-------HHHHHHHhhcC-ChHHHHHH---HHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCC
Q 000146 429 LQAMHKAGCLNLVDV-------VEDVKTSVKNK-VPLVRSLT---LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGT 497 (2052)
Q Consensus 429 L~ai~~~~~~~l~~l-------l~~l~~~L~~K-np~vR~~~---l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~ 497 (2052)
+.+++.++|..++.. ....+..+..+ ++..-..+ |..|...+-+|+... ++.++..+..++.-++
T Consensus 162 i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L~Ll~~~~~~~p~~l----i~sl~e~lL~i~~~s~ 237 (1176)
T KOG1248|consen 162 IAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSLMLLRDVLSTFPRPL----IKSLCEVLLNITTESP 237 (1176)
T ss_pred HHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHhhccCCHHH----HHHHHHHHHhhcccch
Confidence 999998643322111 11111222211 23333333 344444455555544 4889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhh
Q 000146 498 PEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 577 (2052)
Q Consensus 498 ~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 577 (2052)
..|+-.+++|+..+.+.-.. .|+...-.++-.++-..+ |+ ...+-. ...=++.-.
T Consensus 238 v~v~~~~~q~l~~lf~~~~~--------~l~a~~~a~lL~al~~l~-------ps---------~~D~~~-t~~W~~v~~ 292 (1176)
T KOG1248|consen 238 VLVLLEVLQCLHSLFKKHPT--------ALAAELNARLLTALMTLS-------PS---------ENDDLL-TVAWLKVLN 292 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCC--------cchHHHHHHHHHHHHHhC-------CC---------ccchHH-HHHHHHHHH
Confidence 99999999999887765443 222222222222221110 00 000000 000000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHH
Q 000146 578 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKER 657 (2052)
Q Consensus 578 ~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~R 657 (2052)
.+. ... ..+..|-+...+..++ .-+.+ +..+.-+++
T Consensus 293 ~~~---------------------------------~~l---------a~~q~~~~~~~~~~~~-~~~~t-~~~s~~~e~ 328 (1176)
T KOG1248|consen 293 EAH---------------------------------DIL---------ATLQEEKALQALPRLF-SLFFT-ILESLIEEL 328 (1176)
T ss_pred HHH---------------------------------HHH---------HHhCHHHHHHhhhhhh-hHHHH-HHhcccHHH
Confidence 000 000 0011122222222223 23445 556666777
Q ss_pred HHHHHHHHHHHHhcc-c-cchHHHH-HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhh-
Q 000146 658 LEAISSLRQQVEAVQ-N-LDQSVEI-LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA- 733 (2052)
Q Consensus 658 l~ale~L~~~v~~~~-~-~~~~~~~-Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg- 733 (2052)
+++.......+-... . .+..|.. +-.++.. .-..|...+|+++..+++.|+......+-.+|-.|.+.=+
T Consensus 329 ~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~~------kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~ 402 (1176)
T KOG1248|consen 329 VQAASQSLKEILKESVTVIDALCSKQLHSLLDY------KFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRAS 402 (1176)
T ss_pred HHHHHHHHHHHhcccCcccHHHHHHHHHHHHcc------hHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcC
Confidence 776655443332221 1 1122333 2222211 1234677888888888888887777777777777766433
Q ss_pred -chhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCC-C--ChHhHHHHHHhh----
Q 000146 734 -DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH-L--KLKDLIDFCKDT---- 805 (2052)
Q Consensus 734 -d~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~-l--~~k~li~~l~~~---- 805 (2052)
|.-.+....+|+.+...+.||+.|+..+==.+ ++......=.||--+++++-... + -...+++....+
T Consensus 403 ~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl----~~~s~~~~RsWLLPvLR~~i~~A~La~F~~~ivpla~sl~~K~ 478 (1176)
T KOG1248|consen 403 PDFFHKLQLDQCIGSAVRAMGPERVLTILPLNL----HAESLSFTRSWLLPVLRDYIIGASLAFFTEYIVPLAMSLQLKA 478 (1176)
T ss_pred CCCccHHHHHHHHHHHHHhhCHHHHHHHcchhc----cccccccchhHhHHHHHHhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 33356677888999999999988776542221 22222233357777777653321 1 112222222211
Q ss_pred -CCCCCcH---HHHHHHHHHHHHHHHhhC--hhhHhhh--------------hhccHHHHHHHHHHHhcCCC--------
Q 000146 806 -GLQSSAA---ATRNATIKLLGALHKFVG--PDIKGFL--------------ADVKPALLSALDAEYEKNPF-------- 857 (2052)
Q Consensus 806 -gL~~~n~---~VR~aA~~ll~~Ly~~~G--~~l~~~L--------------~~lkP~ll~~Le~efeK~~~-------- 857 (2052)
++....- .+++..-++..-|-.+.- -++..-| .++.+.+...|..-.+.+..
T Consensus 479 ~~l~~~~~~~~~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~ 558 (1176)
T KOG1248|consen 479 KKLKEAGSQVSLYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALLKRPELRETICNSLRMLVEQNKPSSDAAENK 558 (1176)
T ss_pred HhhhhccCcHHHHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHhcchHhHHHHHHHHHHHHHcCCCcchHHHHH
Confidence 0111111 122222222211111110 1111111 23334444444443433310
Q ss_pred ------------------CCCCCCcccc-----------c------ccccc-----CCC---CCCCCCC-----------
Q 000146 858 ------------------EGTVVPKKTV-----------R------ASEST-----SSV---SSGGSDG----------- 883 (2052)
Q Consensus 858 ------------------~~~p~p~r~~-----------r------~~~~~-----~~~---~~~~~d~----------- 883 (2052)
..+++..|.. | ...+. .+. .++.++.
T Consensus 559 e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLd 638 (1176)
T KOG1248|consen 559 EVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLD 638 (1176)
T ss_pred HHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHH
Confidence 0011111100 0 00000 000 0000000
Q ss_pred --------CCcccccccccHHHHhhcCCC-ChHHHHHHHHHHHHHHHhc-cccCCCCChhhHHHHHHhhhccchHHHHHH
Q 000146 884 --------LPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRLYDSNKNLVMA 953 (2052)
Q Consensus 884 --------lpr~dIs~~i~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a-~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~ 953 (2052)
.+...++... .+......+ +-++++.+.+-|.+++... ..........++++.|..-+.++-.-.+..
T Consensus 639 l~~~~a~~~~e~~vs~l~--~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~ 716 (1176)
T KOG1248|consen 639 LLIALAPVQTESQVSKLF--TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQAS 716 (1176)
T ss_pred HHHhhhccccchhHHHHH--HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 0000111100 122223333 6778888888888888630 011112234678889999999999999999
Q ss_pred HHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--Hhc---C-------chhhHHHHHHHHhc
Q 000146 954 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWL--AAV---H-------LDKMVPYVTTALTD 1021 (2052)
Q Consensus 954 Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~--~~~---~-------l~~ll~~l~~~L~~ 1021 (2052)
.|.|+..|...++..+..++...+|-++-.+++-+..-|+.+.+||-.+. ... | +.++++.|...+..
T Consensus 717 rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~g 796 (1176)
T KOG1248|consen 717 RLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVG 796 (1176)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999998888889999999999999999988 321 3 34455566666554
Q ss_pred CccChhHHHHHHHHHHHHhccCCC---CCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000146 1022 AKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1097 (2052)
Q Consensus 1022 ~k~np~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~ 1097 (2052)
+. ...+..-+-.+...+.+... ...+..++.-+..+|...+++||++|...+..++..+++.-+.+++..|-+.
T Consensus 797 d~--~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~s 873 (1176)
T KOG1248|consen 797 DS--TRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPS 873 (1176)
T ss_pred cH--HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHH
Confidence 32 33444424444444444333 2334567777888999999999999999999999999998888887555444
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.5e-08 Score=112.25 Aligned_cols=184 Identities=18% Similarity=0.218 Sum_probs=159.7
Q ss_pred hhhhcccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000146 329 FWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 407 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 407 (2052)
.+..+++++|....++|..++.|+ -++......+..++-.+.+-++..|+.|...||.|++.|+..+...+......++
T Consensus 93 ~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv 172 (334)
T KOG2933|consen 93 ALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLV 172 (334)
T ss_pred HHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999987 4677777788888889999999999999999999999999999999888999999
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYV 486 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~ 486 (2052)
..|+.+-.+.|..||+.+..||.++..+ .+...+++.|..+++|.||.+|.-++..+.+|+.... ......+...++
T Consensus 173 ~~Ll~ka~~dnrFvreda~kAL~aMV~~--vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~ 250 (334)
T KOG2933|consen 173 TQLLHKASQDNRFVREDAEKALVAMVNH--VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLS 250 (334)
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHHhc--cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHH
Confidence 9999999999999999999999999987 7889999999999999999999988877777776653 122234567788
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 487 PICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 487 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
+.+..-+.|.-+++|++|.-.+.....+
T Consensus 251 ~a~~~~~~d~Lp~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 251 RAAQEQGSDKLPELREAARFVRLELKEV 278 (334)
T ss_pred HHHHhhhcccccccccchhHHHHhHHHH
Confidence 9999999999999999998766544433
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-06 Score=121.14 Aligned_cols=270 Identities=18% Similarity=0.128 Sum_probs=160.1
Q ss_pred HHHHHhhhc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 000146 726 LGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 803 (2052)
Q Consensus 726 ~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~ 803 (2052)
+.|++.|.| +.+|..|.+.|..+. +.-+++.|...+ +++++.||..++..|..+.+.... . +.+.
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~----~~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~~~----~----~~L~ 690 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETT----PPGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVLPP----A----PALR 690 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhc----chhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhccCc----h----HHHH
Confidence 445555555 467877776666543 334566666654 788888888888887666432211 1 2233
Q ss_pred hhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCC
Q 000146 804 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 883 (2052)
Q Consensus 804 ~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~ 883 (2052)
.. |+++++.||.+|+..|+.+...--..+...|.+-.|.+....-..+.++
T Consensus 691 ~~-L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~---------------------------- 741 (897)
T PRK13800 691 DH-LGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSV---------------------------- 741 (897)
T ss_pred HH-hcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcc----------------------------
Confidence 44 7788888999888888776411000111112222221111111111110
Q ss_pred CCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 000146 884 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS 963 (2052)
Q Consensus 884 lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~ 963 (2052)
.. .+.++..+.|.++.+|..+.+.|..+-... ...+..|...++|.+..|+..|+..|+.+.
T Consensus 742 -~~-------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g- 803 (897)
T PRK13800 742 -DD-------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAELG- 803 (897)
T ss_pred -cC-------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcC-
Confidence 00 123556677888888888888776653210 223556667778888888888887776552
Q ss_pred HhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccC
Q 000146 964 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1043 (2052)
Q Consensus 964 alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~ 1043 (2052)
.. ..+.+.++..|.|....||.+|..+|..+ +...-++.|...|.++ ++.+|.+++..|...
T Consensus 804 ---~~-----~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~~~a~~~L~~~L~D~--~~~VR~~A~~aL~~~---- 865 (897)
T PRK13800 804 ---CP-----PDDVAAATAALRASAWQVRQGAARALAGA----AADVAVPALVEALTDP--HLDVRKAAVLALTRW---- 865 (897)
T ss_pred ---Cc-----chhHHHHHHHhcCCChHHHHHHHHHHHhc----cccchHHHHHHHhcCC--CHHHHHHHHHHHhcc----
Confidence 11 22335577778888888888877777643 3345567777777766 577888887777652
Q ss_pred CCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHH
Q 000146 1044 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1076 (2052)
Q Consensus 1044 ~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~ 1076 (2052)
. ........|...++|.+++||.+|..+|.
T Consensus 866 ~---~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 866 P---GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred C---CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 11234455667778888888888887774
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.8e-05 Score=98.51 Aligned_cols=491 Identities=18% Similarity=0.191 Sum_probs=285.0
Q ss_pred hhcccC--ChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000146 331 EGVKAT--KWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 407 (2052)
Q Consensus 331 ~~l~s~--kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 407 (2052)
+.+++. +-.+|++++..|..+. .+. +...++..+.+.+...+..+...+--.+..+.. .=...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~l~kli~~~~~G~-----~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~----~~~~~~~l~~ 81 (526)
T PF01602_consen 11 KILNSFKIDISKKKEALKKLIYLMMLGY-----DISFLFMEVIKLISSKDLELKRLGYLYLSLYLH----EDPELLILII 81 (526)
T ss_dssp HHHHCSSTHHHHHHHHHHHHHHHHHTT--------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTT----TSHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCC-----CCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhh----cchhHHHHHH
Confidence 334444 6778899999887754 232 333455566666776676655555444444332 1122577789
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-HH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YV 486 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~ 486 (2052)
..+.+-+.++++.++..|..++-.+... .-.+.+++.|...+.|++|.||..++..+.+++...+.. ++. ++
T Consensus 82 n~l~kdl~~~n~~~~~lAL~~l~~i~~~--~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-----~~~~~~ 154 (526)
T PF01602_consen 82 NSLQKDLNSPNPYIRGLALRTLSNIRTP--EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL-----VEDELI 154 (526)
T ss_dssp HHHHHHHCSSSHHHHHHHHHHHHHH-SH--HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----HHGGHH
T ss_pred HHHHHhhcCCCHHHHHHHHhhhhhhccc--chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----HHHHHH
Confidence 9999999999999999888888887642 335677888888999999999999999999998874332 233 79
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHhCC---hhHHHhHhhc-------cHHHHHHHHHHHhcCCCCCCCCCCCcccC
Q 000146 487 PICMECLNDGTPEVRDAAFSVLAAIAKSVGM---RPLERSIEKL-------DDVRRNKLSEMIAGSGGDVATGTSSARVQ 556 (2052)
Q Consensus 487 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge---~~~~~~l~~L-------d~~k~kkI~e~~~~~~~~~~~~~~~~~~~ 556 (2052)
+.+.+++.|.++.|+.+|..++..+ +.-+. ..+..++..| ++--+-++-..+....
T Consensus 155 ~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~------------- 220 (526)
T PF01602_consen 155 PKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA------------- 220 (526)
T ss_dssp HHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST-------------
T ss_pred HHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc-------------
Confidence 9999999999999999999999888 11111 1111221111 1111112222111100
Q ss_pred CCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHH
Q 000146 557 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR 636 (2052)
Q Consensus 557 ~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~ 636 (2052)
....++...
T Consensus 221 ----------------------------------------------------------------------~~~~~~~~~- 229 (526)
T PF01602_consen 221 ----------------------------------------------------------------------PMEPEDADK- 229 (526)
T ss_dssp ----------------------------------------------------------------------SSSHHHHHH-
T ss_pred ----------------------------------------------------------------------cCChhhhhH-
Confidence 001111100
Q ss_pred hhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCC
Q 000146 637 LGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF 716 (2052)
Q Consensus 637 ~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~ 716 (2052)
..+-+.+...+.+.++..+.+++.-+..+.....-.....+.+++++. +++..+.-.+++.+..++...+..
T Consensus 230 --~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~------s~~~nvr~~~L~~L~~l~~~~~~~ 301 (526)
T PF01602_consen 230 --NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS------SSDPNVRYIALDSLSQLAQSNPPA 301 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT------SSSHHHHHHHHHHHHHHCCHCHHH
T ss_pred --HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh------cccchhehhHHHHHHHhhcccchh
Confidence 111245666777888888888888877443221111122344455443 333445566777776666553111
Q ss_pred chhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChH
Q 000146 717 PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLK 796 (2052)
Q Consensus 717 ~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k 796 (2052)
.. ..... -..+..-.|.-+|..+.++|..++.......++..+.+.+....++.++.+++..+..+...|.. +.+
T Consensus 302 v~-~~~~~-~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~---~~~ 376 (526)
T PF01602_consen 302 VF-NQSLI-LFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP---DAE 376 (526)
T ss_dssp HG-THHHH-HHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS---SHH
T ss_pred hh-hhhhh-hheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc---hHH
Confidence 11 11111 11121223345777888888888887777777888887764455777777777777777777633 223
Q ss_pred hHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCC
Q 000146 797 DLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSV 876 (2052)
Q Consensus 797 ~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~ 876 (2052)
..++.+.++ +...+..|..
T Consensus 377 ~~v~~l~~l-l~~~~~~~~~------------------------------------------------------------ 395 (526)
T PF01602_consen 377 WYVDTLLKL-LEISGDYVSN------------------------------------------------------------ 395 (526)
T ss_dssp HHHHHHHHH-HHCTGGGCHC------------------------------------------------------------
T ss_pred HHHHHHHHh-hhhccccccc------------------------------------------------------------
Confidence 344444433 3222222222
Q ss_pred CCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc-chHHHHHHHH
Q 000146 877 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATL 955 (2052)
Q Consensus 877 ~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D-sN~~V~~~Al 955 (2052)
+.+..+..++... +.....++..|...+.+ ....+...++
T Consensus 396 ----------------------------------~~~~~i~~ll~~~-----~~~~~~~l~~L~~~l~~~~~~~~~~~~~ 436 (526)
T PF01602_consen 396 ----------------------------------EIINVIRDLLSNN-----PELREKILKKLIELLEDISSPEALAAAI 436 (526)
T ss_dssp ----------------------------------HHHHHHHHHHHHS-----TTTHHHHHHHHHHHHTSSSSHHHHHHHH
T ss_pred ----------------------------------hHHHHHHHHhhcC-----hhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2233333333211 11112233333333332 3344667777
Q ss_pred HHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCccChhHHHH
Q 000146 956 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEGRKD 1031 (2052)
Q Consensus 956 ~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~----~ll~~l~~~L~~~k~np~~R~~ 1031 (2052)
-++|+.+..... .. ....++..+.+.+.+....|+..+..++..+....+.. .+++.+......+..++++|..
T Consensus 437 wilGEy~~~~~~-~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~R 514 (526)
T PF01602_consen 437 WILGEYGELIEN-TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDR 514 (526)
T ss_dssp HHHHHHCHHHTT-TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHH
T ss_pred hhhcccCCcccc-cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 777776666554 11 56778888888999999999999999999999887643 4455555555512236888988
Q ss_pred HHHHHH
Q 000146 1032 LFDWLS 1037 (2052)
Q Consensus 1032 ~l~~L~ 1037 (2052)
+..++.
T Consensus 515 a~~y~~ 520 (526)
T PF01602_consen 515 AREYLR 520 (526)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00059 Score=84.10 Aligned_cols=455 Identities=13% Similarity=0.146 Sum_probs=265.0
Q ss_pred HHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcch--hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 000146 368 TLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFS--GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 444 (2052)
Q Consensus 368 ~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~--~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll 444 (2052)
.....++ +....|+..|++|+-.=..-.+..|. -....++....+........++.++..||..++.-+......++
T Consensus 181 iv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ym 260 (858)
T COG5215 181 IVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYM 260 (858)
T ss_pred HHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455 77888899999998875555666674 33567888889999889999999999999998863122333444
Q ss_pred HHH-----HHHhhcCChHHHHHHHHHHHHHHHhcChhH---------------HH-HhhhhHHHHHHHhhc-------CC
Q 000146 445 EDV-----KTSVKNKVPLVRSLTLNWVTFCIETSSKAA---------------VL-KVHKDYVPICMECLN-------DG 496 (2052)
Q Consensus 445 ~~l-----~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~---------------l~-~~l~~l~p~l~k~l~-------Ds 496 (2052)
+.. ..++++.|-+|+..+.+|-..+.+..-... |. ...+.++|.+.++|. |.
T Consensus 261 E~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~D 340 (858)
T COG5215 261 ENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGD 340 (858)
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 432 346788899999999999966554321000 10 123557777777773 22
Q ss_pred ChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhh
Q 000146 497 TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 576 (2052)
Q Consensus 497 ~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 576 (2052)
+=.+-.+|..||..+.+..|+..++|.+. +
T Consensus 341 dWn~smaA~sCLqlfaq~~gd~i~~pVl~------------F-------------------------------------- 370 (858)
T COG5215 341 DWNPSMAASSCLQLFAQLKGDKIMRPVLG------------F-------------------------------------- 370 (858)
T ss_pred ccchhhhHHHHHHHHHHHhhhHhHHHHHH------------H--------------------------------------
Confidence 22466777778877777777665444211 1
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHH
Q 000146 577 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 656 (2052)
Q Consensus 577 ~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~ 656 (2052)
+.+.+.+.+|..
T Consensus 371 --------------------------------------------------------------------vEqni~~~~w~n 382 (858)
T COG5215 371 --------------------------------------------------------------------VEQNIRSESWAN 382 (858)
T ss_pred --------------------------------------------------------------------HHHhccCchhhh
Confidence 123456668999
Q ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHh-cCCC----CcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHh
Q 000146 657 RLEAISSLRQQVEAVQNLDQSVEILVRLVC-MLPG----WSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISER 731 (2052)
Q Consensus 657 Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~-~~pg----~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveK 731 (2052)
|..|+-.+.....+.... .+..+.- -.|+ ..|+-..|.. ....|+..|.+-
T Consensus 383 reaavmAfGSvm~gp~~~-----~lT~~V~qalp~i~n~m~D~~l~vk~-------------------ttAwc~g~iad~ 438 (858)
T COG5215 383 REAAVMAFGSVMHGPCED-----CLTKIVPQALPGIENEMSDSCLWVKS-------------------TTAWCFGAIADH 438 (858)
T ss_pred HHHHHHHhhhhhcCccHH-----HHHhhHHhhhHHHHHhcccceeehhh-------------------HHHHHHHHHHHH
Confidence 999999988777653221 1111100 0011 1222222222 222222222211
Q ss_pred hhchhhhHHHHHHHHHHHhhhChh----HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC----h----HhHH
Q 000146 732 VADIKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK----L----KDLI 799 (2052)
Q Consensus 732 lgd~K~r~~a~e~L~~l~E~~~~~----~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~----~----k~li 799 (2052)
+.+ ..+|+ .+....+-++ .-+|++...|.-..-.++..+....-. + ..++
T Consensus 439 va~----------------~i~p~~Hl~~~vsa~liGl--~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~ 500 (858)
T COG5215 439 VAM----------------IISPCGHLVLEVSASLIGL--MDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAIL 500 (858)
T ss_pred HHH----------------hcCccccccHHHHHHHhhh--hccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHH
Confidence 111 11111 1122222222 345665555555555555555432100 1 1222
Q ss_pred HHHHhh-CCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCC
Q 000146 800 DFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 878 (2052)
Q Consensus 800 ~~l~~~-gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~ 878 (2052)
.-+.+. -+..-..+.|.++...+++|-.+..+.+.+.+.++-.-.++.|++-..-.... ..
T Consensus 501 ~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~--------l~---------- 562 (858)
T COG5215 501 NALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQI--------LA---------- 562 (858)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhh--------hh----------
Confidence 222210 12334457899999999999999998888777776666666665543211000 00
Q ss_pred CCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc-hHHHHHHHHHH
Q 000146 879 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLIT 957 (2052)
Q Consensus 879 ~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds-N~~V~~~Al~~ 957 (2052)
.+|. ...+++.+ .-+.-|..++....+.|.+.. ..|+..|.+.|... -..+--.....
T Consensus 563 -~eD~--------~~~~elqS-----------N~~~vl~aiir~~~~~ie~v~-D~lm~Lf~r~les~~~t~~~~dV~~a 621 (858)
T COG5215 563 -TEDQ--------LLVEELQS-----------NYIGVLEAIIRTRRRDIEDVE-DQLMELFIRILESTKPTTAFGDVYTA 621 (858)
T ss_pred -hHHH--------HHHHHHHH-----------HHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHhccCCchhhhHHHHH
Confidence 0000 00111111 223345556654444455542 44788887777554 33445667788
Q ss_pred HHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc------hhhHHHHHHHHhc
Q 000146 958 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL------DKMVPYVTTALTD 1021 (2052)
Q Consensus 958 l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l------~~ll~~l~~~L~~ 1021 (2052)
|+.++..+++.|++|+..|+|-+...|....-.|...+..-+..++...|- +.++..+...|.+
T Consensus 622 Isal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss 691 (858)
T COG5215 622 ISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSS 691 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999998888888887762 3334444555544
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0089 Score=80.62 Aligned_cols=756 Identities=14% Similarity=0.111 Sum_probs=374.9
Q ss_pred hHHHHHHHHhh--ccChhhHHHHHHHHHHHHHHhCCC---CcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhh--C
Q 000146 167 VFLDVMEKAIK--NKVAKAVVPAIDVMFQALSEFGAK---IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI--G 239 (2052)
Q Consensus 167 ~v~e~Ll~~l~--~K~PKvv~~~l~~L~~~l~~FG~~---~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~l--G 239 (2052)
.++..|.+.+. +-|-.|+-.++.||..+|...+.+ ....+..+-.+..+.-|..+-||.+|...+..+...- +
T Consensus 93 ~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~ 172 (1176)
T KOG1248|consen 93 DTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFA 172 (1176)
T ss_pred HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCC
Confidence 44555556555 678889999999999999887763 3457788888889999999999999999988876521 1
Q ss_pred CchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 000146 240 KDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 319 (2052)
Q Consensus 240 ~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vd 319 (2052)
++.-.+.... ..++..+.+++.-++...+..+|+-.--+ |++.-. |..
T Consensus 173 ~~~~HpA~~~-----vak~cl~~~e~~~~~a~~t~v~~~L~Ll~--------------------------~~~~~~-p~~ 220 (1176)
T KOG1248|consen 173 PDAEHPASLS-----VAKFCLALIESKLGSAENTTVLRSLMLLR--------------------------DVLSTF-PRP 220 (1176)
T ss_pred ccccchHHHH-----HHHHHHHHHHhhhchHHHHHHHHHHHHHH--------------------------HhhccC-CHH
Confidence 1111111110 11222333333211100011111110000 000000 111
Q ss_pred ccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCC-CCCCChHHHHHHHHHHhcCcCHHHHHHH-HHHHHH----HH
Q 000146 320 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKR-IAPGDFTEVCRTLKKLITDVNIAVAVEA-IQAIGN----LA 392 (2052)
Q Consensus 320 Il~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~k-i~~~dy~~l~~~L~k~l~D~N~~V~~~A-~~~l~~----La 392 (2052)
.+..+. +....-.....--.+-++++.+..+-+ .+. +...-+.-++.+|..+--+.|-.....+ ++++.. ++
T Consensus 221 li~sl~-e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~~v~~~~~~~la 299 (1176)
T KOG1248|consen 221 LIKSLC-EVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWLKVLNEAHDILA 299 (1176)
T ss_pred HHHHHH-HHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHH
Confidence 112222 233333455666678889999988763 333 2222344455555444323332222222 122211 11
Q ss_pred HHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-HHHHHHH-HHHHhhcCChHHHHHHHHHHHHHH
Q 000146 393 RGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-LVDVVED-VKTSVKNKVPLVRSLTLNWVTFCI 470 (2052)
Q Consensus 393 ~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~-l~~ll~~-l~~~L~~Knp~vR~~~l~~L~~~l 470 (2052)
..-...--.....+++.++..+-.....+.+++.+++..+.+. |++ .+.+... +...|.-|.-.+=..++..+..++
T Consensus 300 ~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~-sv~~~~~~c~~~~~~~l~~kf~~~~~~ilqi~s~~f 378 (1176)
T KOG1248|consen 300 TLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKE-SVTVIDALCSKQLHSLLDYKFHAVWRFILQILSALF 378 (1176)
T ss_pred HhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcc-cCcccHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 1111111134566777777766777888999999999999987 766 3444444 344566677777788999999999
Q ss_pred HhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHh-hc-----cHHH---HHHHHHHHhc
Q 000146 471 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIE-KL-----DDVR---RNKLSEMIAG 541 (2052)
Q Consensus 471 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~-~L-----d~~k---~kkI~e~~~~ 541 (2052)
+.+++-. .+++-..+..+...=.+.+-.-+..=-+|+|.....+|-+.+-..++ .| +..+ .--|++++.+
T Consensus 379 ek~G~~s-~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLPvLR~~i~~ 457 (1176)
T KOG1248|consen 379 EKCGELS-GPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLPVLRDYIIG 457 (1176)
T ss_pred HHhhhhc-CHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHHHHHHhhcc
Confidence 9886522 12222222222222223333444467788998888888433322211 00 0000 0011111110
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCCCCCcchhh--hhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCC
Q 000146 542 SGGDVATGTSSARVQTSGGSVPSVEASESSFV--RKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEA 619 (2052)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~ 619 (2052)
+. .+- -....+ ..+-. .+ ..+..++
T Consensus 458 A~-------------------La~--F~~~ivpla~sl~----~K----------------------------~~~l~~~ 484 (1176)
T KOG1248|consen 458 AS-------------------LAF--FTEYIVPLAMSLQ----LK----------------------------AKKLKEA 484 (1176)
T ss_pred Cc-------------------HHH--HHHHHHHHHHHHH----HH----------------------------HHhhhhc
Confidence 00 000 000000 00000 00 0000000
Q ss_pred CCCCCCCCCCHHHHHHHhhccCc------HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcc
Q 000146 620 PEDVEPSEMSLEEIESRLGSLIP------ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 693 (2052)
Q Consensus 620 ~~~~~~~~~s~ee~e~~~~~ll~------~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~D 693 (2052)
. . ... ..+-+..++=.++| -|+..-+.+ ....+...+.+.|
T Consensus 485 ~--~-~~~-~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~-------------------------la~~l~~al~~~~---- 531 (1176)
T KOG1248|consen 485 G--S-QVS-LYDTLVDQLWSLLPGFCNYPVDLAESFTD-------------------------LAPILGAALLKRP---- 531 (1176)
T ss_pred c--C-cHH-HHHHHHHHHHHhChhhhCCCccHHHHHHH-------------------------HHHHHHHHHhcch----
Confidence 0 0 000 01111111111111 000000000 0011111111111
Q ss_pred cHHHHHHHHHHHHHHHHHHcC---------CCchhhHHHHHHHHHHhhhch-----h---hhHHHHHHHH-HHHhhhChh
Q 000146 694 KNVQVQQQVIEVINYLAATAT---------KFPKKCVVLCLLGISERVADI-----K---TRAHAMKCLT-TFSEAVGPG 755 (2052)
Q Consensus 694 sN~qV~~~~Le~l~~l~~~~~---------~~~~~~~~~il~~LveKlgd~-----K---~r~~a~e~L~-~l~E~~~~~ 755 (2052)
-....++..|..+++.+. .+..+.+...||.++..-+.+ + .+....+.+. .+.+.++.+
T Consensus 532 ---elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~d 608 (1176)
T KOG1248|consen 532 ---ELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTD 608 (1176)
T ss_pred ---HhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHH
Confidence 111222333333343321 122334455566555443321 1 2222222222 333444333
Q ss_pred HHHHHHHHHHh----h---CCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHh
Q 000146 756 FIFERLYKIMK----D---HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 828 (2052)
Q Consensus 756 ~Vl~~L~~~l~----~---~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~ 828 (2052)
|...+...+. . .+.+..+...|+.+..+..-... -++..+....... ..+++..|+.-+..+|.++-..
T Consensus 609 -v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e--~~vs~l~~v~~~~-e~~~~~~vQkK~yrlL~~l~~~ 684 (1176)
T KOG1248|consen 609 -VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTE--SQVSKLFTVDPEF-ENSSSTKVQKKAYRLLEELSSS 684 (1176)
T ss_pred -HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccc--hhHHHHHHhhHHh-hccccHHHHHHHHHHHHHHhcC
Confidence 3333333321 1 22333333334333333321111 1233444444444 5666889999999988888765
Q ss_pred hChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHH
Q 000146 829 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV 908 (2052)
Q Consensus 829 ~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~ 908 (2052)
+....+..+....+.+. +.+.+.+..--.
T Consensus 685 --~s~~~~~~q~i~~I~n~-------------------------------------------------L~ds~qs~~~~~ 713 (1176)
T KOG1248|consen 685 --PSGEGLVEQRIDDIFNS-------------------------------------------------LLDSFQSSSSPA 713 (1176)
T ss_pred --CchhhHHHHHHHHHHHH-------------------------------------------------HHHHHhccchHH
Confidence 22222221111111222 222233333345
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHH--H---hChhh-HHhhhHHHHHHHH
Q 000146 909 RLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS--A---MGPAV-EKSSKGVLSDILK 982 (2052)
Q Consensus 909 R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~--a---lg~~~-~~~~~~llp~ll~ 982 (2052)
|...+.+|..|++..+.....-....+..++... +|-|..-++.|..||..|+. . .|.+= ...+..+++.|-.
T Consensus 714 ~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isa 792 (1176)
T KOG1248|consen 714 QASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISA 792 (1176)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHh
Confidence 6677777777776432111111112233333333 89999999999999988882 1 23221 2345666666666
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC---CCchhhh
Q 000146 983 CLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHL 1052 (2052)
Q Consensus 983 ~l~D~k~~VR~aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~---~~~~~~l 1052 (2052)
.+......++.+.+-++..++...+ +..+++.+.-.|.+. +++++..+++++..++...+. .++...+
T Consensus 793 gl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~~pe~~l~~~~~~L 870 (1176)
T KOG1248|consen 793 GLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYKFPEECLSPHLEEL 870 (1176)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHcCCHHHHhhhHHHH
Confidence 6666667777666788888876542 345666667777765 599999999999998888775 3455556
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhh
Q 000146 1053 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL 1108 (2052)
Q Consensus 1053 l~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k 1108 (2052)
++.+...+.|....+|++....|..+.+.+|.+.+..++. .....+...|.+
T Consensus 871 L~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~p----ee~~klL~nIRK 922 (1176)
T KOG1248|consen 871 LPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLP----EEDMKLLTNIRK 922 (1176)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCH----HHHHHHHHHHHH
Confidence 6668888899999999999999999999999998887764 444444455544
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00066 Score=83.67 Aligned_cols=467 Identities=15% Similarity=0.165 Sum_probs=266.9
Q ss_pred HHHHhcCcCHHHHHHHHHHHHHHHHH-hh---------------hcchh-hhhhHHHHHHHHhccCc-------HHHHHH
Q 000146 369 LKKLITDVNIAVAVEAIQAIGNLARG-LR---------------THFSG-SSRFLLPVLLEKLKEKK-------PTVAES 424 (2052)
Q Consensus 369 L~k~l~D~N~~V~~~A~~~l~~La~~-L~---------------~~f~~-~~~~llp~LL~klkdkK-------~~V~~a 424 (2052)
....++..|-.|...|......++.. .. .+|.. .+..++|.||..+-... =++.-+
T Consensus 268 t~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~sma 347 (858)
T COG5215 268 TGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMA 347 (858)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhh
Confidence 33456688999988888777666641 11 12332 25568999998884422 247778
Q ss_pred HHHHHHHHHHhcC--CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHH
Q 000146 425 LTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRD 502 (2052)
Q Consensus 425 a~~aL~ai~~~~~--~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~ 502 (2052)
+..||.-+... | .-+..++.-+...+++.+|.-|..+.-.+..++..-.+..+.++.+..+|.+...++|+.--|.+
T Consensus 348 A~sCLqlfaq~-~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ 426 (858)
T COG5215 348 ASSCLQLFAQL-KGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKS 426 (858)
T ss_pred HHHHHHHHHHH-hhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhh
Confidence 99999988876 3 22455667777788899999999999999999887667778888999999999999999999999
Q ss_pred HHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccC
Q 000146 503 AAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLS 582 (2052)
Q Consensus 503 aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~ 582 (2052)
.+..|++.|..++.+- ++|- ..|..... ..+-|..
T Consensus 427 ttAwc~g~iad~va~~-i~p~-~Hl~~~vs----a~liGl~--------------------------------------- 461 (858)
T COG5215 427 TTAWCFGAIADHVAMI-ISPC-GHLVLEVS----ASLIGLM--------------------------------------- 461 (858)
T ss_pred HHHHHHHHHHHHHHHh-cCcc-ccccHHHH----HHHhhhh---------------------------------------
Confidence 9999999998877642 2221 11111000 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHH
Q 000146 583 GKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAIS 662 (2052)
Q Consensus 583 ~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale 662 (2052)
|-|..........+.+. +
T Consensus 462 -----------------------------------D~p~~~~ncsw~~~nlv---------------------------~ 479 (858)
T COG5215 462 -----------------------------------DCPFRSINCSWRKENLV---------------------------D 479 (858)
T ss_pred -----------------------------------ccchHHhhhHHHHHhHH---------------------------H
Confidence 00000000000000000 0
Q ss_pred HHHHHHHh-ccccchHHHHHHHHHhcCCC--CcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhH
Q 000146 663 SLRQQVEA-VQNLDQSVEILVRLVCMLPG--WSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRA 739 (2052)
Q Consensus 663 ~L~~~v~~-~~~~~~~~~~Lv~~L~~~pg--~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~ 739 (2052)
.+.+.... ......--..|+..|.+.-. .+|+|. ....+++|..++.-+++-.......+...+.+|++.
T Consensus 480 h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~--R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~----- 552 (858)
T COG5215 480 HIAKAVREVESFLAKFYLAILNALVKGTELALNESNL--RVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDE----- 552 (858)
T ss_pred hhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhH--HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH-----
Confidence 00000000 00000011222222222111 355554 456678888888776543333344444444444443
Q ss_pred HHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHh-HHHHHHhhCCCCCcHHHHHHH
Q 000146 740 HAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-LIDFCKDTGLQSSAAATRNAT 818 (2052)
Q Consensus 740 ~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~-li~~l~~~gL~~~n~~VR~aA 818 (2052)
++......+..+ . ..---.+++--+..|..+|..++...-++.+ +++.+... ++.+++.+-.
T Consensus 553 ----~isv~~q~l~~e---D-------~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~-les~~~t~~~-- 615 (858)
T COG5215 553 ----CISVLGQILATE---D-------QLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRI-LESTKPTTAF-- 615 (858)
T ss_pred ----HHHHhhhhhhhH---H-------HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-HhccCCchhh--
Confidence 222211111110 0 0011234556677888889999986556655 77777766 7777665322
Q ss_pred HHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHH
Q 000146 819 IKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV 898 (2052)
Q Consensus 819 ~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll 898 (2052)
+.+|..+| ++...|++.|++... ++.|-+.
T Consensus 616 ----~dV~~aIs------------al~~sl~e~Fe~y~~----------------------------------~fiPyl~ 645 (858)
T COG5215 616 ----GDVYTAIS------------ALSTSLEERFEQYAS----------------------------------KFIPYLT 645 (858)
T ss_pred ----hHHHHHHH------------HHHHHHHHHHHHHHh----------------------------------hhhHHHH
Confidence 22222221 233444555554310 1223333
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHhChhhHHhhhHH
Q 000146 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGPAVEKSSKGV 976 (2052)
Q Consensus 899 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds--N~~V~~~Al~~l~~la~alg~~~~~~~~~l 976 (2052)
+.+...+..+-..++-.++++...-+..+.+.. ..++..|.+.|+.+ +..+.-..|.+.+.||.++|.+|.+|+..+
T Consensus 646 ~aln~~d~~v~~~avglvgdlantl~~df~~y~-d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~i 724 (858)
T COG5215 646 RALNCTDRFVLNSAVGLVGDLANTLGTDFNIYA-DVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMI 724 (858)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444444555566677777777654333333321 45678888888654 467888889999999999999999999988
Q ss_pred HHHHHHHhC-----------CCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHH
Q 000146 977 LSDILKCLG-----------DNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTA 1018 (2052)
Q Consensus 977 lp~ll~~l~-----------D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~ 1018 (2052)
+--+.+.-. |=...+++....+...+..... ++.++|++...
T Consensus 725 m~L~qqas~~~p~~~~~~~~dy~~~~~~~v~~ayVgI~~~~~nr~~~v~Pyv~si 779 (858)
T COG5215 725 MMLFQQASELDPHSDEVYVDDYRKNAVQLVNCAYVGIGDSSKNRVRSVLPYVISI 779 (858)
T ss_pred HHHHHHHhccCCCCCceeHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhhHHHHH
Confidence 766554332 1123456666666666666655 77788865543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-06 Score=118.60 Aligned_cols=242 Identities=20% Similarity=0.199 Sum_probs=170.0
Q ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhC--hhhH
Q 000146 757 IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG--PDIK 834 (2052)
Q Consensus 757 Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G--~~l~ 834 (2052)
.++.|+..+ .+.+|.||..++.+|... |. ...++.+..+ |.|.++.||.+|...|+.+-.... +.+.
T Consensus 622 ~~~~L~~~L-~D~d~~VR~~Av~~L~~~----~~-----~~~~~~L~~a-L~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~ 690 (897)
T PRK13800 622 SVAELAPYL-ADPDPGVRRTAVAVLTET----TP-----PGFGPALVAA-LGDGAAAVRRAAAEGLRELVEVLPPAPALR 690 (897)
T ss_pred hHHHHHHHh-cCCCHHHHHHHHHHHhhh----cc-----hhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhccCchHHHH
Confidence 456777775 899999999999998764 32 2456667777 999999999999999877743222 1222
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHH
Q 000146 835 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIE 914 (2052)
Q Consensus 835 ~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale 914 (2052)
..|.+-.|.+....-..+..+.. . -+..|+..+.|+++.+|.+|+.
T Consensus 691 ~~L~~~d~~VR~~A~~aL~~~~~---------------------------------~-~~~~l~~~L~D~d~~VR~~Av~ 736 (897)
T PRK13800 691 DHLGSPDPVVRAAALDVLRALRA---------------------------------G-DAALFAAALGDPDHRVRIEAVR 736 (897)
T ss_pred HHhcCCCHHHHHHHHHHHHhhcc---------------------------------C-CHHHHHHHhcCCCHHHHHHHHH
Confidence 33333222222222122211100 0 0134677899999999999999
Q ss_pred HHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHH
Q 000146 915 AVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMREC 994 (2052)
Q Consensus 915 ~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~a 994 (2052)
.|..+- . ...|...+.|.|..|+..++..|+.+...- ...++.++..++|..+.||.+
T Consensus 737 aL~~~~--------~------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~a 794 (897)
T PRK13800 737 ALVSVD--------D------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAA 794 (897)
T ss_pred HHhccc--------C------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHH
Confidence 987641 0 134667899999999999999888775321 122677889999999999999
Q ss_pred HHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHH
Q 000146 995 TLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEAC 1074 (2052)
Q Consensus 995 a~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~ 1074 (2052)
|..+|..+.. ...+.+.+..+|.++ ++.+|.+++..|... + ....+.+|..+|.|.+++||++|..+
T Consensus 795 A~~aLg~~g~---~~~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l----~----~~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 795 ALAALAELGC---PPDDVAAATAALRAS--AWQVRQGAARALAGA----A----ADVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHHhcCC---cchhHHHHHHHhcCC--ChHHHHHHHHHHHhc----c----ccchHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999887632 234556788889876 589999999888742 1 13456778999999999999999999
Q ss_pred HHHH
Q 000146 1075 IVEI 1078 (2052)
Q Consensus 1075 L~~l 1078 (2052)
|..+
T Consensus 862 L~~~ 865 (897)
T PRK13800 862 LTRW 865 (897)
T ss_pred Hhcc
Confidence 9875
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.9e-05 Score=98.97 Aligned_cols=460 Identities=16% Similarity=0.166 Sum_probs=296.6
Q ss_pred hhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHH
Q 000146 330 WEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 409 (2052)
Q Consensus 330 ~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 409 (2052)
...+.+++-..|+=+.-.+..+.... ++-.--++..|.+=+.+.|..++..|+++++.++. ...++.+++.
T Consensus 48 i~l~~s~~~~~Krl~yl~l~~~~~~~---~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~------~~~~~~l~~~ 118 (526)
T PF01602_consen 48 IKLISSKDLELKRLGYLYLSLYLHED---PELLILIINSLQKDLNSPNPYIRGLALRTLSNIRT------PEMAEPLIPD 118 (526)
T ss_dssp HCTCSSSSHHHHHHHHHHHHHHTTTS---HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S------HHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHhhcc---hhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc------cchhhHHHHH
Confidence 34456788888887777776665321 01123366788888889999999999999999872 2356778999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000146 410 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 488 (2052)
Q Consensus 410 LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~-ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 488 (2052)
+...+.++++.||..|..|+..++......++. +++.+...+.+++|.|+..++..+..+ .+++......++.+...
T Consensus 119 v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~ 196 (526)
T PF01602_consen 119 VIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRI 196 (526)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHH
T ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHH
Confidence 999999999999999999999999872233455 789999999999999999999999887 34443333456777788
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHhCChhH--HHhHhhccHHHH----HHHHHHHhcCCCCCCCCCCCcccCCCCCCC
Q 000146 489 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL--ERSIEKLDDVRR----NKLSEMIAGSGGDVATGTSSARVQTSGGSV 562 (2052)
Q Consensus 489 l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~--~~~l~~Ld~~k~----kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 562 (2052)
+.+.+.+.+|-++-...+++..+...-.+. . ..+++.+.+.-+ .-+-+++.-
T Consensus 197 L~~~l~~~~~~~q~~il~~l~~~~~~~~~~-~~~~~~i~~l~~~l~s~~~~V~~e~~~~--------------------- 254 (526)
T PF01602_consen 197 LCQLLSDPDPWLQIKILRLLRRYAPMEPED-ADKNRIIEPLLNLLQSSSPSVVYEAIRL--------------------- 254 (526)
T ss_dssp HHHHHTCCSHHHHHHHHHHHTTSTSSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred hhhcccccchHHHHHHHHHHHhcccCChhh-hhHHHHHHHHHHHhhccccHHHHHHHHH---------------------
Confidence 888889999998877777776443221111 1 122222221111 001110000
Q ss_pred CCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000146 563 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 642 (2052)
Q Consensus 563 ~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 642 (2052)
.. .. ..+.+ ... .+-
T Consensus 255 ------------------i~--------------------------------~l----------~~~~~-~~~----~~~ 269 (526)
T PF01602_consen 255 ------------------II--------------------------------KL----------SPSPE-LLQ----KAI 269 (526)
T ss_dssp ------------------HH--------------------------------HH----------SSSHH-HHH----HHH
T ss_pred ------------------HH--------------------------------Hh----------hcchH-HHH----hhH
Confidence 00 00 00011 111 112
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 722 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 722 (2052)
..+...|.++++..|..+++.+..+.....+.-......+.++. .|.+..|...+++++..++.. ..+.
T Consensus 270 ~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~-----~~~d~~Ir~~~l~lL~~l~~~------~n~~ 338 (526)
T PF01602_consen 270 NPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLL-----YDDDPSIRKKALDLLYKLANE------SNVK 338 (526)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHH-----CSSSHHHHHHHHHHHHHH--H------HHHH
T ss_pred HHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheec-----CCCChhHHHHHHHHHhhcccc------cchh
Confidence 45678888999999999999998776554111112233333332 356677889999999887764 2566
Q ss_pred HHHHHHHHhhh---chhhhHHHHHHHHHHHhhhCh--hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHh
Q 000146 723 LCLLGISERVA---DIKTRAHAMKCLTTFSEAVGP--GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD 797 (2052)
Q Consensus 723 ~il~~LveKlg---d~K~r~~a~e~L~~l~E~~~~--~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~ 797 (2052)
.++..|..-+. |...+..+...+..+++.+.+ ++.+..+++.+ ...+..+..+++..+..++...... -..
T Consensus 339 ~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll-~~~~~~~~~~~~~~i~~ll~~~~~~---~~~ 414 (526)
T PF01602_consen 339 EILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLL-EISGDYVSNEIINVIRDLLSNNPEL---REK 414 (526)
T ss_dssp HHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHH-HCTGGGCHCHHHHHHHHHHHHSTTT---HHH
T ss_pred hHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhh-hhccccccchHHHHHHHHhhcChhh---hHH
Confidence 67777776663 456888999999999998764 56788888876 5666778889999999998764332 123
Q ss_pred HHHHHHhhCCC-CCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCC
Q 000146 798 LIDFCKDTGLQ-SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSV 876 (2052)
Q Consensus 798 li~~l~~~gL~-~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~ 876 (2052)
++..+... +. -.++.++.++..++|+....... .+ ..+.++..+
T Consensus 415 ~l~~L~~~-l~~~~~~~~~~~~~wilGEy~~~~~~-----~~-~~~~~~~~l---------------------------- 459 (526)
T PF01602_consen 415 ILKKLIEL-LEDISSPEALAAAIWILGEYGELIEN-----TE-SAPDILRSL---------------------------- 459 (526)
T ss_dssp HHHHHHHH-HTSSSSHHHHHHHHHHHHHHCHHHTT-----TT-HHHHHHHHH----------------------------
T ss_pred HHHHHHHH-HHHhhHHHHHHHHHhhhcccCCcccc-----cc-cHHHHHHHH----------------------------
Confidence 34444333 33 46788999999999987665543 00 111122222
Q ss_pred CCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhhhc--cchHHHHHH
Q 000146 877 SSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLY--DSNKNLVMA 953 (2052)
Q Consensus 877 ~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~-~~~~eL~~aL~~rL~--DsN~~V~~~ 953 (2052)
.+.+.+..-.+|...+..+.++.... .. ...+++...+..... +.|..|+..
T Consensus 460 ---------------------~~~~~~~~~~vk~~ilt~~~Kl~~~~----~~~~~~~~i~~~~~~~~~~~s~~~evr~R 514 (526)
T PF01602_consen 460 ---------------------IENFIEESPEVKLQILTALAKLFKRN----PENEVQNEILQFLLSLATEDSSDPEVRDR 514 (526)
T ss_dssp ---------------------HHHHTTSHHHHHHHHHHHHHHHHHHS----CSTTHHHHHHHHHHCHHHHS-SSHHHHHH
T ss_pred ---------------------HHhhccccHHHHHHHHHHHHHHHhhC----CchhhHHHHHHHHHHHhccCCCCHHHHHH
Confidence 22233333457788888888887531 21 122477777777776 779999999
Q ss_pred HHHHHHHHH
Q 000146 954 TLITLGAVA 962 (2052)
Q Consensus 954 Al~~l~~la 962 (2052)
|...+..+-
T Consensus 515 a~~y~~ll~ 523 (526)
T PF01602_consen 515 AREYLRLLN 523 (526)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 998887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.7e-06 Score=99.13 Aligned_cols=146 Identities=12% Similarity=0.063 Sum_probs=109.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 975 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ 975 (2052)
.+...+.|++|.+|..++..|..+ . -.+.+..|...|.|.+..|+..|+..|+.+ + ...+.
T Consensus 132 ~l~~~~~D~~~~VR~~a~~aLg~~--------~---~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~----~----~~~~~ 192 (280)
T PRK09687 132 QSQITAFDKSTNVRFAVAFALSVI--------N---DEAAIPLLINLLKDPNGDVRNWAAFALNSN----K----YDNPD 192 (280)
T ss_pred HHHHHhhCCCHHHHHHHHHHHhcc--------C---CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC----C----CCCHH
Confidence 455667888999999999888543 1 156788899999999999999998888876 1 12346
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHH
Q 000146 976 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1055 (2052)
Q Consensus 976 llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~p 1055 (2052)
.++.++..+.|.+..||..|..+|.. ++-...+|.|...|.+. .+|..++.-|.+ ++. ...++.
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~~----~~~~~a~~ALg~----ig~----~~a~p~ 256 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKKG----TVGDLIIEAAGE----LGD----KTLLPV 256 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcCC----chHHHHHHHHHh----cCC----HhHHHH
Confidence 77888999999999999998888876 45567889899998864 256666655553 221 356666
Q ss_pred HHhhcC-CCCHHHHHHHHHHHH
Q 000146 1056 ASIAMT-DKSSDVRKAAEACIV 1076 (2052)
Q Consensus 1056 l~~~L~-D~~~dVRkaA~~~L~ 1076 (2052)
+...++ +.++.||..|.+++.
T Consensus 257 L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 257 LDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHhhCCChhHHHHHHHHHh
Confidence 777774 789999999887764
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.0027 Score=85.69 Aligned_cols=384 Identities=14% Similarity=0.120 Sum_probs=238.4
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 407 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 407 (2052)
++.+.|.+.+=.+|++|++.+....... .|...++..+.+.+.-.|..+.....-.+..+++. -...+-..+
T Consensus 36 ELr~~L~s~~~~~kk~alKkvIa~mt~G----~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~----~pelalLaI 107 (746)
T PTZ00429 36 ELQNDLNGTDSYRKKAAVKRIIANMTMG----RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARL----QPEKALLAV 107 (746)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCC----CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHccc----ChHHHHHHH
Confidence 4555667777788899999987755222 35677777777788867887777776666655431 122366789
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 487 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p 487 (2052)
..+.+-+.++++.||..|..+|..+-.. .-++.+++.|..++.|++|-||..++..+.+++...+.- +. -..+.+
T Consensus 108 Ntl~KDl~d~Np~IRaLALRtLs~Ir~~--~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pel-v~--~~~~~~ 182 (746)
T PTZ00429 108 NTFLQDTTNSSPVVRALAVRTMMCIRVS--SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQL-FY--QQDFKK 182 (746)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccc-cc--ccchHH
Confidence 9999999999999998776665544321 223455666778889999999999999999988765432 11 124667
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHH-------HhHhhc---cHHHHHHHHHHHhcCCCCCCCCCCCcccCC
Q 000146 488 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLE-------RSIEKL---DDVRRNKLSEMIAGSGGDVATGTSSARVQT 557 (2052)
Q Consensus 488 ~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~-------~~l~~L---d~~k~kkI~e~~~~~~~~~~~~~~~~~~~~ 557 (2052)
.+.++|.|+++.|...|..+|-.+...-+.. +. .++..| ++-.+-.|.+.+..
T Consensus 183 ~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---------------- 245 (746)
T PTZ00429 183 DLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECNEWGQLYILELLAA---------------- 245 (746)
T ss_pred HHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh----------------
Confidence 7888899999999999999998887654432 21 111111 11111111111110
Q ss_pred CCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHh
Q 000146 558 SGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRL 637 (2052)
Q Consensus 558 ~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~ 637 (2052)
..|. +.++.+..
T Consensus 246 --------------------------y~P~-----------------------------------------~~~e~~~i- 257 (746)
T PTZ00429 246 --------------------------QRPS-----------------------------------------DKESAETL- 257 (746)
T ss_pred --------------------------cCCC-----------------------------------------CcHHHHHH-
Confidence 0000 01222211
Q ss_pred hccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHH---HHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC
Q 000146 638 GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILV---RLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 714 (2052)
Q Consensus 638 ~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv---~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~ 714 (2052)
-..+..+|.|.|--.-++++.-+..+....++. ...+.+. ..+. .+..+...++-.+|..+..++...+
T Consensus 258 ----l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~-~~~~~~~rl~~pLv---~L~ss~~eiqyvaLr~I~~i~~~~P 329 (746)
T PTZ00429 258 ----LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQE-LIERCTVRVNTALL---TLSRRDAETQYIVCKNIHALLVIFP 329 (746)
T ss_pred ----HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHH-HHHHHHHHHHHHHH---HhhCCCccHHHHHHHHHHHHHHHCH
Confidence 134567788999888888888777554322110 0011111 1111 1222233455566666666666643
Q ss_pred CCchhhHHHHHHHHHHhhhch-hhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCC
Q 000146 715 KFPKKCVVLCLLGISERVADI-KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL 793 (2052)
Q Consensus 715 ~~~~~~~~~il~~LveKlgd~-K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l 793 (2052)
.+ +..-+...+-+..|+ -+|....++|..++.....+.|+.+|..++ ...++..+.+++..++.+...|..
T Consensus 330 ~l----f~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa-~d~D~ef~r~aIrAIg~lA~k~~~--- 401 (746)
T PTZ00429 330 NL----LRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYA-SGVDMVFVVEVVRAIASLAIKVDS--- 401 (746)
T ss_pred HH----HHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHhChH---
Confidence 32 222233344566775 478889999999999888889999999987 577888999999999888876643
Q ss_pred ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH
Q 000146 794 KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 827 (2052)
Q Consensus 794 ~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~ 827 (2052)
..+.++.++..+ +++... +-..++..+..+.+
T Consensus 402 ~a~~cV~~Ll~l-l~~~~~-~v~e~i~vik~Ilr 433 (746)
T PTZ00429 402 VAPDCANLLLQI-VDRRPE-LLPQVVTAAKDIVR 433 (746)
T ss_pred HHHHHHHHHHHH-hcCCch-hHHHHHHHHHHHHH
Confidence 244566666666 654333 33345555555543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.005 Score=83.14 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHH
Q 000146 421 VAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEV 500 (2052)
Q Consensus 421 V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~V 500 (2052)
.++++...+..+... .....++++++..+.+++..+|+-+..++.++.+..+.. .-..+..+.+-+.|++|.|
T Consensus 49 kk~alKkvIa~mt~G--~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pel-----alLaINtl~KDl~d~Np~I 121 (746)
T PTZ00429 49 KKAAVKRIIANMTMG--RDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEK-----ALLAVNTFLQDTTNSSPVV 121 (746)
T ss_pred HHHHHHHHHHHHHCC--CCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHH-----HHHHHHHHHHHcCCCCHHH
Confidence 355555555554432 567889999999999999999999999998876544321 1245788899999999999
Q ss_pred HHHHHHHHHH
Q 000146 501 RDAAFSVLAA 510 (2052)
Q Consensus 501 R~aA~~~l~~ 510 (2052)
|.-|.++++.
T Consensus 122 RaLALRtLs~ 131 (746)
T PTZ00429 122 RALAVRTMMC 131 (746)
T ss_pred HHHHHHHHHc
Confidence 9999998864
|
|
| >KOG2933 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-06 Score=98.00 Aligned_cols=181 Identities=17% Similarity=0.236 Sum_probs=149.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 975 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ 975 (2052)
..+..|++++|....+|+..+..+.... +..-...+.+++-++.+-++..+..|..+||-+++.|++.++..+.+....
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999988753 444444568899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC----Cchhh
Q 000146 976 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAH 1051 (2052)
Q Consensus 976 llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~----~~~~~ 1051 (2052)
++..++.+-.+.|..||+.|..+|.+++.+.....+++.|...+++. ++..|.........++...... ....+
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~~~--n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~d 248 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQHS--NPRVRAKAALCFSRCVIRLGVLPVLLQGSCD 248 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHhhh--chhhhhhhhccccccceeccccchhhHhHHH
Confidence 99999999999999999999999999999999999999999999876 6777766655555444444321 12234
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1052 LLKPASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1052 ll~pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
++..+-.-+.|+-+.+|++|...+....
T Consensus 249 l~~a~~~~~~d~Lp~~~~~a~~~~~~~~ 276 (334)
T KOG2933|consen 249 LSRAAQEQGSDKLPELREAARFVRLELK 276 (334)
T ss_pred HHHHHHhhhcccccccccchhHHHHhHH
Confidence 4455666788999999999986665443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=4e-05 Score=92.45 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=117.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 980 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~l 980 (2052)
+.|++|.+|..|+..|+.+.... ..+ ...++..|...+.|.+..|+..++..|+.+. -...++.+
T Consensus 100 ~~D~d~~VR~~A~~aLG~~~~~~---~~~--~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----------~~~ai~~L 164 (280)
T PRK09687 100 LEDKSACVRASAINATGHRCKKN---PLY--SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----------DEAAIPLL 164 (280)
T ss_pred hcCCCHHHHHHHHHHHhcccccc---ccc--chHHHHHHHHHhhCCCHHHHHHHHHHHhccC----------CHHHHHHH
Confidence 58899999999999998875321 111 2567778888899999999999998886442 24578999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhc
Q 000146 981 LKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1060 (2052)
Q Consensus 981 l~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1060 (2052)
+..+.|....||..|..+|+.+ ..+-...++.|...|.+. ++.+|.+++..|.+. .....+++|+..|
T Consensus 165 ~~~L~d~~~~VR~~A~~aLg~~--~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~--------~~~~av~~Li~~L 232 (280)
T PRK09687 165 INLLKDPNGDVRNWAAFALNSN--KYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALR--------KDKRVLSVLIKEL 232 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHcc--------CChhHHHHHHHHH
Confidence 9999999999999999999988 333457888899999876 689999999988752 1246788899999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 000146 1061 TDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1061 ~D~~~dVRkaA~~~L~~l~ 1079 (2052)
+|.+ ||..|..+|+.+-
T Consensus 233 ~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 233 KKGT--VGDLIIEAAGELG 249 (280)
T ss_pred cCCc--hHHHHHHHHHhcC
Confidence 9865 7877777776543
|
|
| >KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00063 Score=90.60 Aligned_cols=330 Identities=17% Similarity=0.115 Sum_probs=200.7
Q ss_pred hhHHHHHHHHHHHhhhChh-----HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCc
Q 000146 737 TRAHAMKCLTTFSEAVGPG-----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSA 811 (2052)
Q Consensus 737 ~r~~a~e~L~~l~E~~~~~-----~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n 811 (2052)
+|..|.+.+..+.+.+..+ .+.+.++.. .+.++++++--...+...+...||...-. -.+....-.. +++.-
T Consensus 292 Vr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~-~~d~~~~v~~~~~~~~~~L~~~~~~~~~~-~~~~~~~~~l-~~~~~ 368 (759)
T KOG0211|consen 292 VREAAVESLVSLLDLLDDDDDVVKSLTESLVQA-VEDGSWRVSYMVADKFSELSSAVGPSATR-TQLVPPVSNL-LKDEE 368 (759)
T ss_pred HHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHH-hcChhHHHHHHHhhhhhhHHHHhccccCc-ccchhhHHHH-hcchh
Confidence 5666667676666665554 344444444 25667777766666777766666663221 1222222223 55666
Q ss_pred HHHHHHHHHHHHHHHHhhChhh--HhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccc
Q 000146 812 AATRNATIKLLGALHKFVGPDI--KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDI 889 (2052)
Q Consensus 812 ~~VR~aA~~ll~~Ly~~~G~~l--~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dI 889 (2052)
.++|.++..-...+..+...+- ....+.+-|.++..+.+.-..+ |+... +...+....+|-..-
T Consensus 369 ~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~v------------r~a~a--~~~~~~~p~~~k~~t 434 (759)
T KOG0211|consen 369 WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHV------------RSALA--SVITGLSPILPKERT 434 (759)
T ss_pred hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchH------------HHHHh--ccccccCccCCcCcC
Confidence 6666666665555555544211 1111222233333322211111 10000 000111222332223
Q ss_pred cccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChh
Q 000146 890 SGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA 968 (2052)
Q Consensus 890 s~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~ 968 (2052)
...+.+.++..+.|..-.+|...++.+..+.. .+..+.-.. -..+++++...-.|.+-.++...+..+..++.-.|..
T Consensus 435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~-v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~ 513 (759)
T KOG0211|consen 435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEE-VNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVE 513 (759)
T ss_pred ccccChhhhhhcchhhHHHHHhhHHHHHHHHh-ccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhH
Confidence 33455677888899999999998877744433 222222222 2457788888889999999999999999999999855
Q ss_pred hHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC
Q 000146 969 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1044 (2052)
Q Consensus 969 ~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l----~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~ 1044 (2052)
|.. ..+.+.+..-+-|.--.+|.+|...+..++...|. ..+++.++....+. |.-.|..++.-+....+-++
T Consensus 514 ~~~--~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~--~y~~R~t~l~si~~la~v~g 589 (759)
T KOG0211|consen 514 FFD--EKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQD--NYLVRMTTLFSIHELAEVLG 589 (759)
T ss_pred Hhh--HHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCc--ccchhhHHHHHHHHHHHHhc
Confidence 432 22555566667888889999999999999999982 34556555555544 45678888888875554444
Q ss_pred CCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHH
Q 000146 1045 GFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIE 1088 (2052)
Q Consensus 1045 ~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~ 1088 (2052)
.......+++++.....|.+++||-.+.+.|..++..+......
T Consensus 590 ~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~ 633 (759)
T KOG0211|consen 590 QEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRD 633 (759)
T ss_pred cHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHH
Confidence 43334566777888889999999999999998888877764433
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.19 Score=67.65 Aligned_cols=598 Identities=14% Similarity=0.112 Sum_probs=304.1
Q ss_pred HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhc---CCC
Q 000146 364 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAG---CLN 439 (2052)
Q Consensus 364 ~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK-~~V~~aa~~aL~ai~~~~---~~~ 439 (2052)
.++..|...++|....|+.-|++-++.++..+... .+..++..+++.+..-. ...---+.-+|-.+...+ ...
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 35566777788999999999999999999988743 46667777777665444 222222223333333221 233
Q ss_pred HHHHHHHHHHHhh--------cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH-HHhhcCCChHHHHHHHHHHHH
Q 000146 440 LVDVVEDVKTSVK--------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC-MECLNDGTPEVRDAAFSVLAA 510 (2052)
Q Consensus 440 l~~ll~~l~~~L~--------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l-~k~l~Ds~~~VR~aA~~~l~~ 510 (2052)
++++++.|..++. .....||-.++-++=.+.....+..+.+++..+.+.+ ..++-|..-.+|.+|..||-.
T Consensus 418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 6788888877763 1235788888777777666667777777777666655 578899999999999988865
Q ss_pred HHHHhCChhH-HHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCC
Q 000146 511 IAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 589 (2052)
Q Consensus 511 l~~~~Ge~~~-~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~ 589 (2052)
..-..|+-+. .+++...|-..-.....++.
T Consensus 498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~------------------------------------------------- 528 (1133)
T KOG1943|consen 498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYL------------------------------------------------- 528 (1133)
T ss_pred HhccCCCCCCchhhhhhcchhhhhhhhhHHH-------------------------------------------------
Confidence 5544444311 11222211100000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHH
Q 000146 590 APASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVE 669 (2052)
Q Consensus 590 ~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~ 669 (2052)
++ ..+..+.+.....++..-+..++.|=+-+.|..|...|.++..
T Consensus 529 --------------------------------~l---~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 529 --------------------------------DL---CVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred --------------------------------HH---hHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 00 0111222222333444555566888788899999888887443
Q ss_pred hccccchHHHHHHHHHh----cCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH---HHHHHHHHHhhhchhhhHHHH
Q 000146 670 AVQNLDQSVEILVRLVC----MLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV---VLCLLGISERVADIKTRAHAM 742 (2052)
Q Consensus 670 ~~~~~~~~~~~Lv~~L~----~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~---~~il~~LveKlgd~K~r~~a~ 742 (2052)
...+. .....+.+++. ..+.+...-+.+....+..+..+-.....+....+ ..+++.+.++-.....++.-.
T Consensus 574 ~~pk~-~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr 652 (1133)
T KOG1943|consen 574 TEPKY-LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMR 652 (1133)
T ss_pred hhHHh-hcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHH
Confidence 31110 01112333331 11112222222222222222211111111112222 224566665555544334444
Q ss_pred HHHHHHHhhhCh-------hHHHHHHHHHH---hhCCCHHHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhhCCCCCc
Q 000146 743 KCLTTFSEAVGP-------GFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSA 811 (2052)
Q Consensus 743 e~L~~l~E~~~~-------~~Vl~~L~~~l---~~~KnpKv~~e~L~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~~n 811 (2052)
.+...+.|.++. +++.+..-..+ ..+.| .+|.++...+++++..|-...- ...+++......+-...+
T Consensus 653 ~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~ 731 (1133)
T KOG1943|consen 653 QATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSE 731 (1133)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchH
Confidence 555566665442 34444322222 23445 6788888888888877644311 111354444332133346
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccc
Q 000146 812 AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 891 (2052)
Q Consensus 812 ~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~ 891 (2052)
..+|..-+..++.+-..+ +... .++-+.
T Consensus 732 ~~~r~g~~lal~~lp~~~---i~~~-------~q~~lc------------------------------------------ 759 (1133)
T KOG1943|consen 732 ERIRRGLILALGVLPSEL---IHRH-------LQEKLC------------------------------------------ 759 (1133)
T ss_pred HHHHHHHHHHHccCcHHh---hchH-------HHHHHH------------------------------------------
Confidence 666766555444332111 0000 011110
Q ss_pred cccHHHHhhcCCCCh-HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh----c----cchHHHHHHHHHHHHHHH
Q 000146 892 KFTPTLVKSLESPDW-KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL----Y----DSNKNLVMATLITLGAVA 962 (2052)
Q Consensus 892 ~i~~~ll~~l~d~~W-k~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL----~----DsN~~V~~~Al~~l~~la 962 (2052)
..++......-| ..|..++.++..++..-.....+..+.+++..|.+.+ . |.-.-|+.+|+..+..+-
T Consensus 760 ---~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~ 836 (1133)
T KOG1943|consen 760 ---KLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLL 836 (1133)
T ss_pred ---HHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhh
Confidence 011111111115 3488888888877764222234444555555555544 3 444568899999888887
Q ss_pred HHhC--hhhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHH---HHh-cCccChhHHHHHHHH
Q 000146 963 SAMG--PAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTT---ALT-DAKLGAEGRKDLFDW 1035 (2052)
Q Consensus 963 ~alg--~~~~~~-~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~---~L~-~~k~np~~R~~~l~~ 1035 (2052)
..+. +-++.+ +..++..+++..-|+-...|+.|..|+..+..+-.--..++..-. .+- +...++..=...+..
T Consensus 837 ~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a~~~~~qi~~~~~~i~~~~~~~~L~ei~~~~~a~~~~~~~~~~f~ 916 (1133)
T KOG1943|consen 837 DTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELAASALNQIVVHSPSIPHFRHIEKLEEIFPRDYANVPWALPPTLFP 916 (1133)
T ss_pred hhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhceeecCCCCCcchHHHHHHhhcCcccccCCCcccchhhh
Confidence 6654 334443 555667788888888888899999999998877221122332221 111 000001000111111
Q ss_pred HHHHhccCCCCCch-hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhcc
Q 000146 1036 LSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1110 (2052)
Q Consensus 1036 L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~ 1110 (2052)
+...+.. .+.. .+.+..+...+.---.+.++.|.+++..+++ +...+.+-.+.....-...+.+++-..+
T Consensus 917 L~~~Ll~---~~~y~~~v~lGl~vs~ggl~esl~k~a~q~l~e~~R--~~~~dp~t~~~~~stl~~~~~~~l~~er 987 (1133)
T KOG1943|consen 917 LNSSLLE---LPRYYEEVLLGLVVSLGGLTESLIKLAKQALLEYVR--DENSDPKTIGSRDSTLLQLIEEALLNER 987 (1133)
T ss_pred HHHHHHh---hHHHHHHHhhhhHHHhhhhHHHHHHHHHHHHHHHHH--HhhcCcccccchHHHHHHHHHHHHHHHH
Confidence 1111111 1111 2333334444444445667777777777777 5555555555555555666666554444
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.056 Score=71.18 Aligned_cols=178 Identities=20% Similarity=0.263 Sum_probs=103.6
Q ss_pred CChHHHHHHHHHHHHHhcCCC----CCC-CChHHHHHHHHHHhcCc--CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHH
Q 000146 336 TKWSERKDAVAELTKLASTKR----IAP-GDFTEVCRTLKKLITDV--NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 408 (2052)
Q Consensus 336 ~kWkeR~eaL~~L~~L~~~~k----i~~-~dy~~l~~~L~k~l~D~--N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 408 (2052)
.|---|..+++.|..++..+. +.. +-+..|+..|...-.|+ +...+-..+...+.++..-...+....+.++.
T Consensus 214 dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~ 293 (503)
T PF10508_consen 214 DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLE 293 (503)
T ss_pred ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 333345666676666664221 111 22233333333332344 33344444567777776522233333455666
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcCh--
Q 000146 409 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-- 475 (2052)
Q Consensus 409 ~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~-----------l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~-- 475 (2052)
.+++.+....+..+..|.+|+-.+... ..+ +..++..+.....+....+|..+++.++.++.....
T Consensus 294 ~l~~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~ 372 (503)
T PF10508_consen 294 RLFSMLESQDPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQ 372 (503)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 666666778888999999998887643 111 233344444445555668999999999999765432
Q ss_pred -hHHHHhh---------hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 476 -AAVLKVH---------KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 476 -~~l~~~l---------~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
..+.... +.....+...+.-+.|++|-+|...+..+...
T Consensus 373 ~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 373 DNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 1111111 11111678888999999999999999888744
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0057 Score=75.02 Aligned_cols=190 Identities=17% Similarity=0.107 Sum_probs=139.9
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhc-C--CCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhh--hcchhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLAS-T--KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR--THFSGS 402 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~-~--~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~--~~f~~~ 402 (2052)
++.+.+.+++=+.|.++|+.+..+.. . +......+.+|+..+.+.++-....=...|+++++.++-.+| ..-+..
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei 126 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI 126 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence 56677788999999999999988663 2 222235678999999999984444667889999999999887 444566
Q ss_pred hhhHHHHHHHHhccCc--HHHHHHHHHHHHHHHHhcCCCH---H---HHHHHHHHHh--h--c--------CChHHHHHH
Q 000146 403 SRFLLPVLLEKLKEKK--PTVAESLTQTLQAMHKAGCLNL---V---DVVEDVKTSV--K--N--------KVPLVRSLT 462 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK--~~V~~aa~~aL~ai~~~~~~~l---~---~ll~~l~~~L--~--~--------Knp~vR~~~ 462 (2052)
...+.|.|...+.|.. ..+|.++..||-.+.-.+|... . ++++.|+... + . .++.+...+
T Consensus 127 ~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 127 FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 7788888888888764 3566666666655543323333 3 3344333221 1 1 135788888
Q ss_pred HHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000146 463 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 517 (2052)
Q Consensus 463 l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge 517 (2052)
+.--..++...+...+...+...+|.+..+|+..+.+||-+|-++++.+.....+
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888877667777888999999999999999999999999999988774
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.15 Score=67.15 Aligned_cols=399 Identities=15% Similarity=0.173 Sum_probs=231.8
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhc
Q 000146 761 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADV 840 (2052)
Q Consensus 761 L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~l 840 (2052)
++..+ +..+......++..|..++..+....+ ...+.+++.. ||.|+++.||.-+.+.++.+-...+..+
T Consensus 43 lf~~L-~~~~~e~v~~~~~iL~~~l~~~~~~~l-~~~~~~~L~~-gL~h~~~~Vr~l~l~~l~~~~~~~~~~~------- 112 (503)
T PF10508_consen 43 LFDCL-NTSNREQVELICDILKRLLSALSPDSL-LPQYQPFLQR-GLTHPSPKVRRLALKQLGRIARHSEGAA------- 112 (503)
T ss_pred HHHHH-hhcChHHHHHHHHHHHHHHhccCHHHH-HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHhcCCHHHH-------
Confidence 44443 344666666777778888876554433 4567777777 4999999999998887544432211000
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHH
Q 000146 841 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKIL 920 (2052)
Q Consensus 841 kP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll 920 (2052)
+ .+...+ +-+.++..+.+.+-.+.+.|+..|..+.
T Consensus 113 ------------~-----------------------------~~~~~~----l~~~i~~~L~~~d~~Va~~A~~~L~~l~ 147 (503)
T PF10508_consen 113 ------------Q-----------------------------LLVDNE----LLPLIIQCLRDPDLSVAKAAIKALKKLA 147 (503)
T ss_pred ------------H-----------------------------HhcCcc----HHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 0 000011 3456778889999999999999999988
Q ss_pred HhccccCCCCCh-hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHHHhCCCcHHHHHHHHH
Q 000146 921 EEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLT 997 (2052)
Q Consensus 921 ~~a~~~I~~~~~-~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~--llp~ll~~l~D~k~~VR~aa~~ 997 (2052)
... ..+. ..| .++...|...+..+|..++..++.++..++..-...+ .++.. +++.++..+.+....++-.+.+
T Consensus 148 ~~~-~~~~-~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnale 224 (503)
T PF10508_consen 148 SHP-EGLE-QLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALE 224 (503)
T ss_pred CCc-hhHH-HHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHH
Confidence 521 1111 111 2237777888877788888888888888875543333 44443 9999999999988899999999
Q ss_pred HHHHHHHhcC-c-----hhhHHHHHHHHhcCccCh-hHHHHHHHHHHHHhccCCC--CC----chhhhHHHHHhhcCCCC
Q 000146 998 VLDAWLAAVH-L-----DKMVPYVTTALTDAKLGA-EGRKDLFDWLSKQLTGLSG--FP----DAAHLLKPASIAMTDKS 1064 (2052)
Q Consensus 998 aL~~i~~~~~-l-----~~ll~~l~~~L~~~k~np-~~R~~~l~~L~~~l~~~~~--~~----~~~~ll~pl~~~L~D~~ 1064 (2052)
.|..++..-+ . ..+++.|...+.+...+| ....-+.+.+ +.+.+... .. ....++..+...++..+
T Consensus 225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~-~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRM-KFFGNLARVSPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999998433 1 235666777776544455 2222222222 12222111 11 22345555667778999
Q ss_pred HHHHHHHHHHHHHHHHHc-ChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000146 1065 SDVRKAAEACIVEILRAG-GQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAIS 1143 (2052)
Q Consensus 1065 ~dVRkaA~~~L~~l~~~~-G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 1143 (2052)
...|..|..+++.+.... |...+ ..+-.+.-...+..+....+.
T Consensus 304 ~~~~~~A~dtlg~igst~~G~~~L---~~~~~~~~~~~l~~~~~~~~~-------------------------------- 348 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGKQLL---LQKQGPAMKHVLKAIGDAIKS-------------------------------- 348 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHHHHH---HhhcchHHHHHHHHHHHHhcC--------------------------------
Confidence 999999999999776433 33322 122222222222222211110
Q ss_pred cCCCCCCCCCCCcccccchhhhhh-hhccccCCCchHHHhhhhhccccccCCChhHHHHHHHHHHhhhhH---H-HHHhh
Q 000146 1144 SRVIPTKGARPESIMSVQDFAVQS-QALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFRE---D-LHRRL 1218 (2052)
Q Consensus 1144 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~R~~~~~~k~~f~~pr~e~ve~L~~q~~~~~~~---~-l~~~l 1218 (2052)
++ .. .+. ...++ +.++. ...+...+++-.+...+...++. . ++-.+
T Consensus 349 -------~~-~~--lk~--r~l~al~~il~-----------------~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~ 399 (503)
T PF10508_consen 349 -------GS-TE--LKL--RALHALASILT-----------------SGTDRQDNDILSITESWYESLSGSPLSNLLMSL 399 (503)
T ss_pred -------Cc-hH--HHH--HHHHHHHHHHh-----------------cCCCCchHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 00 00 000 00000 00000 00111222332333333333222 1 44445
Q ss_pred cCcCHHH-HHHHHHHHHHhcCcCh-hhhHHHHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHH
Q 000146 1219 LSTDFKK-QVDGLEMLQKALPSIR-KDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1282 (2052)
Q Consensus 1219 fs~D~k~-~l~al~~L~~~l~~~~-~~~i~~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~ 1282 (2052)
...+|-+ |++|+..|.....+.- ...+.+.--++.|++-|-.|++..+...-.++++.+.....
T Consensus 400 ~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 400 LKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred hcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 5678764 8999998888776642 22344456689999999999999999999999998765444
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0005 Score=69.12 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc
Q 000146 340 ERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 418 (2052)
Q Consensus 340 eR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK 418 (2052)
.|+.+|..|.+++ .-++-....+..|++.+.+.+.|.+.+|+..||+++..+++..+..+-+|...++..|...+.|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD 81 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5899999998875 323223344578999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000146 419 PTVAESLTQTLQAMH 433 (2052)
Q Consensus 419 ~~V~~aa~~aL~ai~ 433 (2052)
++|+.++ +.|+.++
T Consensus 82 ~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 82 ENVRSAA-ELLDRLL 95 (97)
T ss_pred hhHHHHH-HHHHHHh
Confidence 9999888 5566554
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.31 Score=63.60 Aligned_cols=86 Identities=20% Similarity=0.241 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChH
Q 000146 420 TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 499 (2052)
Q Consensus 420 ~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 499 (2052)
-.++|..-.+.-|+.. .....+++++......||+.||.-.-.+|.+..+..+.-.+. =+..+.+.|.|+++.
T Consensus 51 ~KleAmKRIia~iA~G--~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-----SIntfQk~L~DpN~L 123 (968)
T KOG1060|consen 51 LKLEAMKRIIALIAKG--KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-----SINTFQKALKDPNQL 123 (968)
T ss_pred HHHHHHHHHHHHHhcC--CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee-----eHHHHHhhhcCCcHH
Confidence 4566665555555543 568899999999999999999999999999988765432221 145678999999999
Q ss_pred HHHHHHHHHHHHH
Q 000146 500 VRDAAFSVLAAIA 512 (2052)
Q Consensus 500 VR~aA~~~l~~l~ 512 (2052)
+|..|..+|..|-
T Consensus 124 iRasALRvlSsIR 136 (968)
T KOG1060|consen 124 IRASALRVLSSIR 136 (968)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999886553
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.031 Score=71.07 Aligned_cols=274 Identities=13% Similarity=0.099 Sum_probs=149.8
Q ss_pred hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhH
Q 000146 755 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIK 834 (2052)
Q Consensus 755 ~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~ 834 (2052)
+.++..+... .+...++||..+++.|-++-+ |.+ + -+.+.....++ +.|.+..||.+|++++............
T Consensus 197 ~~~~~~l~~~-~~~~D~~Vrt~A~eglL~L~e--g~k-L-~~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 197 EHAARGLIYL-EHDQDFRVRTHAVEGLLALSE--GFK-L-SKACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHHH-hcCCCcchHHHHHHHHHhhcc--ccc-c-cHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3455544444 578899999999998877766 442 1 24566677788 9999999999999998777655422221
Q ss_pred hhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCC-------CChH
Q 000146 835 GFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-------PDWK 907 (2052)
Q Consensus 835 ~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d-------~~Wk 907 (2052)
.+-++ .+..++.|.++-..-. .-.-.+|....+ .+ ....++..+++.+.-| .-|+
T Consensus 271 ~e~~e-----~kl~D~aF~~vC~~v~-D~sl~VRV~AaK---------~l---G~~~~vSee~i~QTLdKKlms~lRRkr 332 (823)
T KOG2259|consen 271 RESEE-----EKLKDAAFSSVCRAVR-DRSLSVRVEAAK---------AL---GEFEQVSEEIIQQTLDKKLMSRLRRKR 332 (823)
T ss_pred chhhh-----hhhHHHHHHHHHHHHh-cCceeeeehHHH---------Hh---chHHHhHHHHHHHHHHHHHhhhhhhhh
Confidence 11111 3344445544311000 000011111000 00 0011122233322211 1233
Q ss_pred HHHHHHHHHHHHHH-hccccCCCCC------h-------hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000146 908 VRLESIEAVNKILE-EANKRIQPAG------T-------GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 973 (2052)
Q Consensus 908 ~R~eale~L~~ll~-~a~~~I~~~~------~-------~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~ 973 (2052)
.-.+.-..+..=-+ ..+++....- - .--..+|..-|.|-=-.|+.+|...+..|+..-. .|.
T Consensus 333 ~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP----~FA 408 (823)
T KOG2259|consen 333 TAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP----GFA 408 (823)
T ss_pred hcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC----CcH
Confidence 32222222211000 0011111000 0 0123566666777777888888888888875432 234
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhh
Q 000146 974 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1052 (2052)
Q Consensus 974 ~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l-~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~l 1052 (2052)
...+--++..|+|.-..||--|+.+|..+..+..+ +..++.+...|.+. ++++|.++.+.|.. .+......+.-.
T Consensus 409 ~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~--~~~~d~~~i~m~ 484 (823)
T KOG2259|consen 409 VRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDR--SVDVREALRELLKN--ARVSDLECIDMC 484 (823)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhc--CHHHHHHHHHHHHh--cCCCcHHHHHHH
Confidence 55566677888888888999999999988888766 45788888888876 57888888777753 233332233344
Q ss_pred HHHHHhhc
Q 000146 1053 LKPASIAM 1060 (2052)
Q Consensus 1053 l~pl~~~L 1060 (2052)
+..++++|
T Consensus 485 v~~lL~~L 492 (823)
T KOG2259|consen 485 VAHLLKNL 492 (823)
T ss_pred HHHHHHHh
Confidence 44566665
|
|
| >KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=1.5 Score=59.68 Aligned_cols=497 Identities=17% Similarity=0.149 Sum_probs=257.2
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHhh----cCChHHHHHHHHHHHHHHHhc
Q 000146 401 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVK----NKVPLVRSLTLNWVTFCIETS 473 (2052)
Q Consensus 401 ~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l---~~ll~~l~~~L~----~Knp~vR~~~l~~L~~~l~~~ 473 (2052)
-+++.++-.|+..+.|+...||=++.+.+..+... .+. ++++..+++.+. +..|- +++.+|+.+...-
T Consensus 337 eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~r--lp~~Lad~vi~svid~~~p~e~~~aWH---gacLaLAELA~rG 411 (1133)
T KOG1943|consen 337 EIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSR--LPPELADQVIGSVIDLFNPAEDDSAWH---GACLALAELALRG 411 (1133)
T ss_pred HHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHcc--CcHHHHHHHHHHHHHhcCcCCchhHHH---HHHHHHHHHHhcC
Confidence 46778999999999999999999999999988775 332 334444444222 23333 5555655533221
Q ss_pred ChhHHHHhhhhHHHHHHHhhc--------CCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCC
Q 000146 474 SKAAVLKVHKDYVPICMECLN--------DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD 545 (2052)
Q Consensus 474 ~~~~l~~~l~~l~p~l~k~l~--------Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~ 545 (2052)
=.+...+..++|.+.+.+. -.-..||++|+-.+|++.+...-..+.+++..|-..-.
T Consensus 412 --lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL------------- 476 (1133)
T KOG1943|consen 412 --LLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALL------------- 476 (1133)
T ss_pred --CcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHH-------------
Confidence 0122345789999999884 23457999999999999999886667776665532111
Q ss_pred CCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCC
Q 000146 546 VATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP 625 (2052)
Q Consensus 546 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~ 625 (2052)
T Consensus 477 -------------------------------------------------------------------------------- 476 (1133)
T KOG1943|consen 477 -------------------------------------------------------------------------------- 476 (1133)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 000146 626 SEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--DQSVEILVRLVCMLPGWSEKNVQVQQQVI 703 (2052)
Q Consensus 626 ~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~--~~~~~~Lv~~L~~~pg~~DsN~qV~~~~L 703 (2052)
+..++|..-.-|-+|--.+++.+...++. +...-..+.|+.. .-.+...
T Consensus 477 --------------------~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV---------~~rsNcy 527 (1133)
T KOG1943|consen 477 --------------------IVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSV---------TNRSNCY 527 (1133)
T ss_pred --------------------HHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhh---------hhhhhHH
Confidence 11122222222333333333222221110 0000011122210 0122222
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHHh-hh--chhhhHHHHHHHHHHHhhhC---hhHHHHHHHHHHhhCCCHHHHHHH
Q 000146 704 EVINYLAATATKFPKKCVVLCLLGISER-VA--DIKTRAHAMKCLTTFSEAVG---PGFIFERLYKIMKDHKNPKVLSEG 777 (2052)
Q Consensus 704 e~l~~l~~~~~~~~~~~~~~il~~LveK-lg--d~K~r~~a~e~L~~l~E~~~---~~~Vl~~L~~~l~~~KnpKv~~e~ 777 (2052)
..+...+..++. +...++..++.+ +- |.++|+.+..+|..+....+ .++++..+++.. ..+++-.|.++
T Consensus 528 ~~l~~~ia~~~~----y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~-ls~~~~~r~g~ 602 (1133)
T KOG1943|consen 528 LDLCVSIAEFSG----YREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDST-LSKDASMRHGV 602 (1133)
T ss_pred HHHhHHHHhhhh----HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhh-cCCChHHhhhh
Confidence 223332333222 233445555543 43 47889999999988776433 456777777774 67888889888
Q ss_pred HHHHHHHHHHh-CCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHH--HHHHhhChhhHhhhhhccHHHHHHHHHHHhc
Q 000146 778 ILWMVSAVEDF-GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLG--ALHKFVGPDIKGFLADVKPALLSALDAEYEK 854 (2052)
Q Consensus 778 L~~L~~~i~~f-G~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~--~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK 854 (2052)
....++++..+ +...+........+. |+ ..-+..+. ..|+-+| .+. .-...+.|+.
T Consensus 603 ~la~~ev~~~~~~l~~~~~~l~e~~i~--~l--------~~ii~~~~~~~~~rg~~-~lm------r~~~~~~Ie~---- 661 (1133)
T KOG1943|consen 603 FLAAGEVIGALRKLEPVIKGLDENRIA--GL--------LSIIPPICDRYFYRGQG-TLM------RQATLKFIEQ---- 661 (1133)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHhh--hh--------hhhccHHHHHHhccchH-HHH------HHHHHHHHHH----
Confidence 88888877532 111000000000000 00 00111122 2233333 111 0111122221
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hh
Q 000146 855 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TG 933 (2052)
Q Consensus 855 ~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~ 933 (2052)
+..... | ..+...+. ....-+.+.+.+.+ .+|.++..++.+++.. ....+. ..
T Consensus 662 ~s~s~~----~-----------------~~~~~v~e-~~~~ll~~~l~~~n-~i~~~av~av~~l~s~---y~~~d~~~~ 715 (1133)
T KOG1943|consen 662 LSLSKD----R-----------------LFQDFVIE-NWQMLLAQNLTLPN-QIRDAAVSAVSDLVST---YVKADEGEE 715 (1133)
T ss_pred hhhccc----h-----------------hHHHHHHH-HHHHHHHHhhcchH-HHHHHHHHHHHHHHHH---HHhcCchhh
Confidence 111000 0 00001111 00011222334566 8999999999999863 233222 12
Q ss_pred -hHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcC--
Q 000146 934 -ELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVH-- 1007 (2052)
Q Consensus 934 -eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~alg~~~~~~-~~~llp~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~-- 1007 (2052)
+++.....++ ++++..++..-.-+++.+...+ +.-+ -+.+...++..+- |.-+.-|+....+++.++...+
T Consensus 716 ~~li~~~ls~~~~~~~~~~r~g~~lal~~lp~~~---i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~ 792 (1133)
T KOG1943|consen 716 APLITRYLSRLTKCSEERIRRGLILALGVLPSEL---IHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSL 792 (1133)
T ss_pred hHHHHHHHHHhcCchHHHHHHHHHHHHccCcHHh---hchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHh
Confidence 3544444444 5557777765544444443221 1111 2233444444443 3366778888888888887765
Q ss_pred -----chhhHHHHHHHHhc------CccChhHHHHHHHHHHHHhccCCCCCc-hhhhHHHHHhh----cCCCCHHHHHHH
Q 000146 1008 -----LDKMVPYVTTALTD------AKLGAEGRKDLFDWLSKQLTGLSGFPD-AAHLLKPASIA----MTDKSSDVRKAA 1071 (2052)
Q Consensus 1008 -----l~~ll~~l~~~L~~------~k~np~~R~~~l~~L~~~l~~~~~~~~-~~~ll~pl~~~----L~D~~~dVRkaA 1071 (2052)
..++++.|..+|.+ +.+...+|..++..|...+.....++- ..+.+.+++.+ --|+-...|.-|
T Consensus 793 ~~~~~~~k~~e~LL~~lddYttd~rGDVGswVReaAm~al~~~~~~l~~p~~ld~~~i~~~~~~~vqQ~veKIdrlre~a 872 (1133)
T KOG1943|consen 793 LFSESIEKFRETLLNALDDYTTDSRGDVGSWVREAAMKALSSLLDTLSSPKLLDEDSINRIIRYFVQQAVEKIDRLRELA 872 (1133)
T ss_pred hccccHHHHHHHHHHHHhhcccccCccHHHHHHHHHHHHHHhhhhhhcCcccccHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677777777763 112345888888888776665553221 23445554443 356666678888
Q ss_pred HHHHHHHHHH
Q 000146 1072 EACIVEILRA 1081 (2052)
Q Consensus 1072 ~~~L~~l~~~ 1081 (2052)
..|+..+..|
T Consensus 873 ~~~~~qi~~~ 882 (1133)
T KOG1943|consen 873 ASALNQIVVH 882 (1133)
T ss_pred HHHHhceeec
Confidence 8888777766
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0095 Score=79.86 Aligned_cols=290 Identities=15% Similarity=0.210 Sum_probs=190.1
Q ss_pred CHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchh----hHHHHHHHH
Q 000146 653 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKK----CVVLCLLGI 728 (2052)
Q Consensus 653 ~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~----~~~~il~~L 728 (2052)
.-..|++|++-|..+-.-.+.. ...+-++.|+.. -|.|+..+|+..++++|..++....++... ..+.++|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de-~~LDRVlPY~v~--l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDE-VKLDRVLPYFVH--LLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchH-HHHhhhHHHHHH--HhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 4556889998887654443222 245666777654 389999999999999999988876555433 235566766
Q ss_pred HHhhhch---hhhHHHHHHHHHHHhhhC-hhHHHHHHHH--HHhhCCCHH----HH-HHHHHHHHHHHHHhCCCCCChHh
Q 000146 729 SERVADI---KTRAHAMKCLTTFSEAVG-PGFIFERLYK--IMKDHKNPK----VL-SEGILWMVSAVEDFGVSHLKLKD 797 (2052)
Q Consensus 729 veKlgd~---K~r~~a~e~L~~l~E~~~-~~~Vl~~L~~--~l~~~KnpK----v~-~e~L~~L~~~i~~fG~~~l~~k~ 797 (2052)
-.-+-|. .+|-.-..+|-.+|+... .. .+.+.+. ++.+..|.. -. ..-++.|. ..
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFl-e~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-------------~~ 578 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFL-ELTQELRQAGMLNDPNSETAPEQNYNTELQALH-------------HT 578 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHH-HHHHHHHhcccccCcccccccccccchHHHHHH-------------HH
Confidence 6656662 356555556666655311 10 0111111 111222211 00 00011111 12
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCC
Q 000146 798 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 877 (2052)
Q Consensus 798 li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~ 877 (2052)
+-+.+..+ |.++.+.||.+-.+-++.|+.+.|.. + +
T Consensus 579 V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk~-----------------------k------------s-------- 614 (1431)
T KOG1240|consen 579 VEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGKE-----------------------K------------S-------- 614 (1431)
T ss_pred HHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhhc-----------------------c------------c--------
Confidence 22334556 78888999999999999999988732 0 0
Q ss_pred CCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh-HHHHHHhhhccchHHHHHHHHH
Q 000146 878 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE-LFGGLRGRLYDSNKNLVMATLI 956 (2052)
Q Consensus 878 ~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~e-L~~aL~~rL~DsN~~V~~~Al~ 956 (2052)
.| + |.+-|+.-+.|++|.-|-.-.+.|-.+. -.+......| +++.|.+-|.|...-|+..||.
T Consensus 615 ---ND------~---iLshLiTfLNDkDw~LR~aFfdsI~gvs----i~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~ 678 (1431)
T KOG1240|consen 615 ---ND------V---ILSHLITFLNDKDWRLRGAFFDSIVGVS----IFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALG 678 (1431)
T ss_pred ---cc------c---hHHHHHHHhcCccHHHHHHHHhhccceE----EEEeeeeHHHHHHHHHHHhccCcchhhHHHHHH
Confidence 11 1 5567788899999999999888876554 2344432233 5677788999999999999999
Q ss_pred HHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHh
Q 000146 957 TLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALT 1020 (2052)
Q Consensus 957 ~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l----~~ll~~l~~~L~ 1020 (2052)
++..|++. |--=++++..++..++-.|...+..||.++...|-++.+.++- -.++|.|-++|.
T Consensus 679 ~ls~Lik~-~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~ 745 (1431)
T KOG1240|consen 679 SLSILIKL-GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE 745 (1431)
T ss_pred HHHHHHHh-cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh
Confidence 99999864 3223467888888889999999999999999999999988762 346777777775
|
|
| >KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.45 Score=62.20 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=121.9
Q ss_pred chhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000146 327 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406 (2052)
Q Consensus 327 ~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 406 (2052)
.++..+|.+.+=.++.||++.+.+++... .|.+++++.+.|-+.-.|+.|....---+=..|+.-- ..+-.-
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G----~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqp----dLALLS 109 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKG----KDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQP----DLALLS 109 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcC----CcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCC----Cceeee
Confidence 46677788888999999999998866321 3578889998888888888888777555555554211 122333
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH----HHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000146 407 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVK----TSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 482 (2052)
Q Consensus 407 lp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~----~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 482 (2052)
+..+-+.++|+++-+|..|..+|..| -+.-|.|.++ .+..+-.|.||..++..+..+..-.+. +.
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e-----~k 178 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE-----QK 178 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh-----hH
Confidence 55666779999999998876666544 3444555444 455577899999999999887653321 22
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 483 KDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 483 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
.+++..+.++|.|..+-|-.+|.-||..++
T Consensus 179 ~qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 179 DQLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred HHHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 578889999999999999999988887665
|
|
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.14 Score=65.46 Aligned_cols=181 Identities=16% Similarity=0.124 Sum_probs=126.2
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCC---CCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKR---IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSS 403 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~k---i~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~ 403 (2052)
....++.|.+=..+..+...++++.+..+ +...--..+++.|...+. +.+..+..+|+-++..+|.|-...-.-++
T Consensus 70 ~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv 149 (514)
T KOG0166|consen 70 LMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV 149 (514)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence 34556777788889999999999875333 332222356777777776 88899999999999999998765433332
Q ss_pred -hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHH------HHHHHHHhhcCCh-HHHHHHHHHHHHHHHhcCh
Q 000146 404 -RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV------VEDVKTSVKNKVP-LVRSLTLNWVTFCIETSSK 475 (2052)
Q Consensus 404 -~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~l------l~~l~~~L~~Knp-~vR~~~l~~L~~~l~~~~~ 475 (2052)
...+|.++..+......|++.+.-||..++.. +..+.++ ++.++..+....+ .....+...|..+.....+
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagd-s~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P 228 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGD-SPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNP 228 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccC-ChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCC
Confidence 25678889999999999999999999999987 4444443 4556666655544 3333444444554444323
Q ss_pred hHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 000146 476 AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLA 509 (2052)
Q Consensus 476 ~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~ 509 (2052)
..-...+..++|+|..++.+.|++|..-|+-++.
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAls 262 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALS 262 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2223556889999999999999999855544443
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0033 Score=63.33 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCC
Q 000146 908 VRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN 987 (2052)
Q Consensus 908 ~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~ 987 (2052)
.|+.||-.|..+...-.+.+... +.+|++.+...+.|.+..|+..||+.+..+++..+..+-+|...++..+.+.+.|.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~-l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKY-LDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHH-HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 48889999988876433443333 58899999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 000146 988 KKHMRECTLTVLDAW 1002 (2052)
Q Consensus 988 k~~VR~aa~~aL~~i 1002 (2052)
.+.||.+| +.|+.+
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99999998 455543
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.97 E-value=3.9 Score=57.67 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=85.4
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCC-ChhhHHHHHHhhh-------ccc----hHHHHHHHHHHHHHHH
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGGLRGRL-------YDS----NKNLVMATLITLGAVA 962 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~-~~~eL~~aL~~rL-------~Ds----N~~V~~~Al~~l~~la 962 (2052)
..|+..+-..+..+=.+++-+|..+... +.... ...+++..+.++| .+. |.....-.+-++|.++
T Consensus 1124 e~L~~~i~k~g~a~V~~~vsCl~sl~~k---~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~ 1200 (1692)
T KOG1020|consen 1124 EDLLKRIVKMGMATVVEAVSCLGSLATK---RTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLS 1200 (1692)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHhh---hccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHH
Confidence 3444444444555556677777777642 11111 1133343333333 233 5556677888999999
Q ss_pred H--------HhChhhHHhhhHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHHhcC-c---hhhHHHHHHHHhcCccCh
Q 000146 963 S--------AMGPAVEKSSKGVLSDILKCL----GDNKKHMRECTLTVLDAWLAAVH-L---DKMVPYVTTALTDAKLGA 1026 (2052)
Q Consensus 963 ~--------alg~~~~~~~~~llp~ll~~l----~D~k~~VR~aa~~aL~~i~~~~~-l---~~ll~~l~~~L~~~k~np 1026 (2052)
. .-|+.+.+....+--.++.+| ++.+..+|..|..+|+.++-.-+ + ..+...+...|.+.+ ++
T Consensus 1201 Ryfdf~~~~~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n-~~ 1279 (1692)
T KOG1020|consen 1201 RYFDFPKPSNDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDN-SD 1279 (1692)
T ss_pred HhccCCCccCCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhc-cc
Confidence 7 345566666666666666665 47779999999999998775432 2 345556666676554 33
Q ss_pred hH-HHHHHHHHHHHhc
Q 000146 1027 EG-RKDLFDWLSKQLT 1041 (2052)
Q Consensus 1027 ~~-R~~~l~~L~~~l~ 1041 (2052)
.. |..++.-+..+|.
T Consensus 1280 ~~~ki~~l~n~~~yL~ 1295 (1692)
T KOG1020|consen 1280 IKSKIQLLQNLELYLL 1295 (1692)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 44 7777776666554
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.24 Score=63.89 Aligned_cols=185 Identities=18% Similarity=0.226 Sum_probs=139.1
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHH
Q 000146 902 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 980 (2052)
Q Consensus 902 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~l 980 (2052)
...++-.|..+++.+..++ ||......+.+++..+...+ ..........+++++..+++++=-.-.+....++..+
T Consensus 200 ~~~~~~~~~~~~~~la~Lv---NK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L 276 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLV---NKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKL 276 (415)
T ss_pred cCCChHHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 4445899999999999887 45334344567777777777 6677888899999999999998555567788899999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhc--------C-----------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhc
Q 000146 981 LKCLGDNKKHMRECTLTVLDAWLAAV--------H-----------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLT 1041 (2052)
Q Consensus 981 l~~l~D~k~~VR~aa~~aL~~i~~~~--------~-----------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~ 1041 (2052)
++.|.| +.+...+..++..++... + ...++|.+.+...+. +...|...+..|...+.
T Consensus 277 ~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~--~~~~k~~yL~ALs~ll~ 352 (415)
T PF12460_consen 277 LELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA--DDEIKSNYLTALSHLLK 352 (415)
T ss_pred HHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc--ChhhHHHHHHHHHHHHh
Confidence 999999 667888888888887652 1 233445555555543 23467778888888888
Q ss_pred cCCCC---CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000146 1042 GLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1094 (2052)
Q Consensus 1042 ~~~~~---~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L 1094 (2052)
+.+.. +++..+++-++.+|.=.+.+||.++-.++..+...- .+.+.+++..|
T Consensus 353 ~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sL 407 (415)
T PF12460_consen 353 NVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSL 407 (415)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHH
Confidence 87763 566777777999998888999999999999988877 56777776554
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.02 Score=64.78 Aligned_cols=130 Identities=21% Similarity=0.257 Sum_probs=101.4
Q ss_pred ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh
Q 000146 905 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 984 (2052)
Q Consensus 905 ~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l 984 (2052)
++.+|..++..+++++..- |+......+.+..+|.|.+..|+..|+.++..|... ++-+.-..++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~-----~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY-----PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC-----cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHH
Confidence 4678999999999998642 343456778889999999999999999999999854 44444566778899999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcC-------ccChhHHHHHHHHHHHHhcc
Q 000146 985 GDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDA-------KLGAEGRKDLFDWLSKQLTG 1042 (2052)
Q Consensus 985 ~D~k~~VR~aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~-------k~np~~R~~~l~~L~~~l~~ 1042 (2052)
.|.++.||+.|..++..+....+ +...++.+...|.+. ..+.+-|..++.+|...+.+
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998843 345556666666532 23456788899998887764
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.088 Score=71.18 Aligned_cols=274 Identities=15% Similarity=0.081 Sum_probs=182.7
Q ss_pred hhHHHHHHHHHHHhhhChhHHHHHHHHHH---hhCCCHHHHHHHHHHHHHHHHHh---CCCC--CChHhHHHHHHhhCCC
Q 000146 737 TRAHAMKCLTTFSEAVGPGFIFERLYKIM---KDHKNPKVLSEGILWMVSAVEDF---GVSH--LKLKDLIDFCKDTGLQ 808 (2052)
Q Consensus 737 ~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l---~~~KnpKv~~e~L~~L~~~i~~f---G~~~--l~~k~li~~l~~~gL~ 808 (2052)
.|-.|.+.|..++...+-+..+++++++. ..+..++||..++..|++++... .... +-++-|++.+..+ +.
T Consensus 439 tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l-~~ 517 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL-LN 517 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh-hc
Confidence 57778888888888877666666666653 46889999999999999998532 2221 2235567777777 77
Q ss_pred C-CcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCC---CCCCCCccccccccccCCCCCCCCCCC
Q 000146 809 S-SAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPF---EGTVVPKKTVRASESTSSVSSGGSDGL 884 (2052)
Q Consensus 809 ~-~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~---~~~p~p~r~~r~~~~~~~~~~~~~d~l 884 (2052)
+ .+..||-+-..++..|.... ..|+ +.-|+.... ..+-..+.. ..... .
T Consensus 518 d~~~~~vRiayAsnla~LA~tA----~rFl-----------e~~q~~~~~g~~n~~nset~~----------~~~~~--~ 570 (1431)
T KOG1240|consen 518 DSSAQIVRIAYASNLAQLAKTA----YRFL-----------ELTQELRQAGMLNDPNSETAP----------EQNYN--T 570 (1431)
T ss_pred cCccceehhhHHhhHHHHHHHH----HHHH-----------HHHHHHHhcccccCccccccc----------ccccc--h
Confidence 7 67789999888887776532 1222 222221100 000000000 00000 0
Q ss_pred CcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 000146 885 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 964 (2052)
Q Consensus 885 pr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~a 964 (2052)
...++..-+...+...+.|..--+|..-|+.|..++.-- .+.+.+ .=|+.-|..-|+|....++..=.+.|..++--
T Consensus 571 ~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF-Gk~ksN--D~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~ 647 (1431)
T KOG1240|consen 571 ELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFF-GKEKSN--DVILSHLITFLNDKDWRLRGAFFDSIVGVSIF 647 (1431)
T ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-hhcccc--cchHHHHHHHhcCccHHHHHHHHhhccceEEE
Confidence 011111112233445578888888999999988888632 233433 23677888889999999999888888888777
Q ss_pred hChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----chhhHHHHHHHHhcCccChhHHHHHHHHHHHH
Q 000146 965 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-----LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1039 (2052)
Q Consensus 965 lg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-----l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~ 1039 (2052)
.|.. ..-+.++|-+.+.|.|.-+.|...|..||..+++.-- +..++..+.+.|-++ |.-+|..++.++...
T Consensus 648 VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP--N~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 648 VGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP--NLWIRRAVLGIIAAI 723 (1431)
T ss_pred Eeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc--hHHHHHHHHHHHHHH
Confidence 7765 2345688999999999999999999999999998543 345666777888888 678999999999987
Q ss_pred hccCCC
Q 000146 1040 LTGLSG 1045 (2052)
Q Consensus 1040 l~~~~~ 1045 (2052)
...+..
T Consensus 724 ~~~ls~ 729 (1431)
T KOG1240|consen 724 ARQLSA 729 (1431)
T ss_pred Hhhhhh
Confidence 766654
|
|
| >KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.78 E-value=5.2 Score=56.46 Aligned_cols=139 Identities=17% Similarity=0.201 Sum_probs=95.8
Q ss_pred HhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000146 394 GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 471 (2052)
Q Consensus 394 ~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~--~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~ 471 (2052)
-+...|++|+..+ +.-+++....+|.-|..||..++... -...+++...+..-+.+....||..++..+++++-
T Consensus 809 ~f~~sfD~yLk~I----l~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl 884 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLI----LSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVL 884 (1692)
T ss_pred HHHHhhHHHHHHH----HHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh
Confidence 4556677775544 44567888888888888888888872 13457888888888888888889888888888887
Q ss_pred hcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh-----hHHHhHhhcc---HHHHHHHHHHHhc
Q 000146 472 TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR-----PLERSIEKLD---DVRRNKLSEMIAG 541 (2052)
Q Consensus 472 ~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~-----~~~~~l~~Ld---~~k~kkI~e~~~~ 541 (2052)
..+.- . ..+-..+...+.|+.-.||+.+.+-+-.++.-..+= ...+++.... +.-++.+.+.+.+
T Consensus 885 ~~~e~-~----~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~k 957 (1692)
T KOG1020|consen 885 SIPEL-I----FQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLK 957 (1692)
T ss_pred ccHHH-H----HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 66543 3 344456777888888888888888888888776631 2344444442 1245555665544
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.11 Score=66.78 Aligned_cols=189 Identities=15% Similarity=0.188 Sum_probs=147.2
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHh-cCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000146 334 KATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 411 (2052)
Q Consensus 334 ~s~kWkeR~eaL~~L~~L~~~~ki~~~-dy~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 411 (2052)
...++-.|..+++.+..+++. ...+ .+.+++..+...+ ..........++..+.-+++||=-+-.+....++..|+
T Consensus 200 ~~~~~~~~~~~~~~la~LvNK--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~ 277 (415)
T PF12460_consen 200 SSEDEFSRLAALQLLASLVNK--WPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLL 277 (415)
T ss_pred cCCChHHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 445699999999998888753 3333 4677777777777 46666678888899999999876555688889999999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh-c-C----CC-----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000146 412 EKLKEKKPTVAESLTQTLQAMHKA-G-C----LN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 474 (2052)
Q Consensus 412 ~klkdkK~~V~~aa~~aL~ai~~~-~-~----~~-----------l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~ 474 (2052)
+.+.+ +.+...+..++..++.. . + .+ +..++|.+.++.+..+...|...+..|..++++.|
T Consensus 278 ~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP 355 (415)
T PF12460_consen 278 ELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP 355 (415)
T ss_pred HHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC
Confidence 99999 56677777888777764 1 0 01 36677778888777676799999999999999999
Q ss_pred hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhc
Q 000146 475 KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 527 (2052)
Q Consensus 475 ~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~L 527 (2052)
+..+..+++.++|.+.++|.=++++||.++.+++..+..--. ..+.++++.|
T Consensus 356 ~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~-~~i~~hl~sL 407 (415)
T PF12460_consen 356 KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP-ELISEHLSSL 407 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH-HHHHHHHHHH
Confidence 998889999999999999999999999999999987775552 3345555544
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.17 Score=64.71 Aligned_cols=361 Identities=17% Similarity=0.147 Sum_probs=208.9
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhc-cccCCCCChhhHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEA-NKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a-~~~I~~~~~~eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
+..+..+.+.+-..+..+...+.+++... ++.|..-.-..+++.|...| .+.+..++..|.-+|..||.+--..-..+
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 34566667777777999999999999732 12121111124556666666 47789999999999999997654443333
Q ss_pred hh-HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-c------hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC
Q 000146 973 SK-GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1044 (2052)
Q Consensus 973 ~~-~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-l------~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~ 1044 (2052)
+. ..+|.++.++..+...|++-|.-+|..++...+ + ...++.++..+.....-...| -+.|...-|...+
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lR--n~tW~LsNlcrgk 226 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLR--NATWTLSNLCRGK 226 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHH--HHHHHHHHHHcCC
Confidence 33 367889999999999999999999998886543 1 123344555554331002333 3456555555443
Q ss_pred -CCCc---hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCC
Q 000146 1045 -GFPD---AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1120 (2052)
Q Consensus 1045 -~~~~---~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~ 1120 (2052)
+.+. +..+++.|..+|.+.+.+|..-|.-++..+.....+ .+. .+ ++......+.+.+........
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne-~iq-~v--i~~gvv~~LV~lL~~~~~~v~------ 296 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNE-KIQ-MV--IDAGVVPRLVDLLGHSSPKVV------ 296 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH-HHH-HH--HHccchHHHHHHHcCCCcccc------
Confidence 3333 456667788899999999998777666655433332 211 11 222333444555543322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhcc---------ccCC-CchHHHhhhhhcccc
Q 000146 1121 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALL---------NVKD-SNKEDRERMVVRRFK 1190 (2052)
Q Consensus 1121 ~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~k~~R~~~~~~k~~ 1190 (2052)
.|+-|+.. -+.+ | .+.+++.++ .+.. +.++. +|. --=|.
T Consensus 297 ---------------~PaLRaiG--NIvt-G-----------~d~QTq~vi~~~~L~~l~~ll~~s~~~~-ikk-EAcW~ 345 (514)
T KOG0166|consen 297 ---------------TPALRAIG--NIVT-G-----------SDEQTQVVINSGALPVLSNLLSSSPKES-IKK-EACWT 345 (514)
T ss_pred ---------------cHHHhhcc--ceee-c-----------cHHHHHHHHhcChHHHHHHHhccCcchh-HHH-HHHHH
Confidence 00000000 0000 0 011222111 1111 11110 111 11143
Q ss_pred cc---CCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCcChhhhHHH--HHHHHHHHHHhhcCccHH
Q 000146 1191 FE---DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV--LDILLRWFVLQFCKSNTT 1265 (2052)
Q Consensus 1191 f~---~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~~i~~--lDlllk~l~lr~~dtN~~ 1265 (2052)
.. ....+++ +.=|..-+=+.|+..|-+.||+-|.+|.=.+.....+...+.+.. -.-+++-|+..|.-.+++
T Consensus 346 iSNItAG~~~qi---qaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ 422 (514)
T KOG0166|consen 346 ISNITAGNQEQI---QAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVK 422 (514)
T ss_pred HHHhhcCCHHHH---HHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChH
Confidence 32 2344444 444666677889999999999999999999998887776554442 224677777777778999
Q ss_pred HHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCC
Q 000146 1266 CLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGH 1306 (2052)
Q Consensus 1266 vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd 1306 (2052)
++..+||.|..++..-.... .+.. -.+.-+++..|-
T Consensus 423 ii~v~Ld~l~nil~~~e~~~-~~~~----n~~~~~IEe~gg 458 (514)
T KOG0166|consen 423 IILVALDGLENILKVGEAEK-NRGT----NPLAIMIEEAGG 458 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cccc----cHHHHHHHHccC
Confidence 99999999998765544322 1110 344555666654
|
|
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.61 E-value=1.2 Score=58.26 Aligned_cols=109 Identities=14% Similarity=0.183 Sum_probs=78.1
Q ss_pred HHHHhhcCcCHHHHHHHHHHHHHhcCcChhhhHHHHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHh
Q 000146 1213 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE 1292 (2052)
Q Consensus 1213 ~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~~i~~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~E 1292 (2052)
+++..|-+.|+.-|-++++...+...+.. ..-+..++..++.+||..-.-+.-+|=+.|+..+...--.|.++
T Consensus 321 DvLrvLss~dldvr~Ktldi~ldLvssrN------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~- 393 (948)
T KOG1058|consen 321 DVLRVLSSPDLDVRSKTLDIALDLVSSRN------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV- 393 (948)
T ss_pred HHHHHcCcccccHHHHHHHHHHhhhhhcc------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH-
Confidence 67788889999999999998877765433 22244566677888766544455555556666666666678887
Q ss_pred HHhhhHHHHHhhCCChHHHHHHHHHHHHHHhhcCCc
Q 000146 1293 AAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA 1328 (2052)
Q Consensus 1293 a~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~ 1328 (2052)
|+..+|.|++-+||..+..-..|-..++-....||.
T Consensus 394 aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~ 429 (948)
T KOG1058|consen 394 AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPN 429 (948)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCch
Confidence 888999999999998887766666666655555553
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.52 Score=58.99 Aligned_cols=157 Identities=21% Similarity=0.176 Sum_probs=114.5
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHH
Q 000146 904 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 983 (2052)
Q Consensus 904 ~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~ 983 (2052)
..|..|..+++.+..+-. .+....|+..+.|....|+..|...++.+.... ..+.+.+...
T Consensus 161 ~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~ 221 (335)
T COG1413 161 ALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKA 221 (335)
T ss_pred hHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHH
Confidence 347788888888865532 567888999999999999999999888777443 5677888999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCC
Q 000146 984 LGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1063 (2052)
Q Consensus 984 l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~ 1063 (2052)
+.|....||.++..++.. .|...-.+.+...+.+. ++..+.....++. .........++...+.|.
T Consensus 222 ~~~~~~~vr~~~~~~l~~----~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~ 287 (335)
T COG1413 222 LSDESLEVRKAALLALGE----IGDEEAVDALAKALEDE--DVILALLAAAALG--------ALDLAEAALPLLLLLIDE 287 (335)
T ss_pred hcCCCHHHHHHHHHHhcc----cCcchhHHHHHHHHhcc--chHHHHHHHHHhc--------ccCchhhHHHHHHHhhcc
Confidence 999999999998888875 45566677778888755 3455555544443 112344566678888999
Q ss_pred CHHHHHHHHHHHHHHHHHcChhHHHHHhcc
Q 000146 1064 SSDVRKAAEACIVEILRAGGQETIEKNLKD 1093 (2052)
Q Consensus 1064 ~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~ 1093 (2052)
+..+|..+...+..+...............
T Consensus 288 ~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~ 317 (335)
T COG1413 288 ANAVRLEAALALGQIGQEKAVAALLLALED 317 (335)
T ss_pred hhhHHHHHHHHHHhhcccchHHHHHHHhcC
Confidence 999999998888777666555544444333
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.44 E-value=3.6 Score=52.21 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=77.6
Q ss_pred HHHHHHHHHh--hhcc-hhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHHhhcCCh-HH
Q 000146 386 QAIGNLARGL--RTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED---VKTSVKNKVP-LV 458 (2052)
Q Consensus 386 ~~l~~La~~L--~~~f-~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~---l~~~L~~Knp-~v 458 (2052)
.+|..|+.-+ |+.| +..+..++-++++.|..|.+..|+++--|+..+..- + ++++-. |..-++.+.| .+
T Consensus 43 ~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~~---t-edvlm~tssiMkD~~~g~~~~~ 118 (898)
T COG5240 43 KLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSKL---T-EDVLMGTSSIMKDLNGGVPDDV 118 (898)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhhc---c-hhhhHHHHHHHHhhccCCcccc
Confidence 4444455433 5668 678999999999999999999999998888887653 1 344433 3344456667 88
Q ss_pred HHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHH
Q 000146 459 RSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAF 505 (2052)
Q Consensus 459 R~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 505 (2052)
|-.++.-|.+++..... ..+-..+..++-|+.+.+|.+|.
T Consensus 119 kp~AiRsL~~Vid~~tv-------~~~er~l~~a~Vs~~~a~~saal 158 (898)
T COG5240 119 KPMAIRSLFSVIDGETV-------YDFERYLNQAFVSTSMARRSAAL 158 (898)
T ss_pred ccHHHHHHHHhcCcchh-------hhHHHHhhhhccccchhhhhhHH
Confidence 88888888888765432 23344566778899999988874
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0071 Score=54.22 Aligned_cols=55 Identities=22% Similarity=0.191 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000146 456 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 511 (2052)
Q Consensus 456 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 511 (2052)
|.+|..++..|.++.+ .....+.++++.++|.|..+|.|+++.||.+|..+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~-~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAE-GCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTT-TTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhc-ccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7899999999998444 344456678899999999999999999999999999754
|
... |
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.32 E-value=6.7 Score=52.22 Aligned_cols=123 Identities=16% Similarity=0.116 Sum_probs=88.9
Q ss_pred HHHHHHHHhhhcchh-hhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 000146 387 AIGNLARGLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNW 465 (2052)
Q Consensus 387 ~l~~La~~L~~~f~~-~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~ 465 (2052)
=+|+||-.|-=+=.. .+-.+...|-+-+...++.|+-.|..++..++.. .-..++.+++..-++|.+|-+|.-++..
T Consensus 88 RiGYLaamLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~--EmardlapeVe~Ll~~~~~~irKKA~Lc 165 (866)
T KOG1062|consen 88 RIGYLAAMLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP--EMARDLAPEVERLLQHRDPYIRKKAALC 165 (866)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH--HHhHHhhHHHHHHHhCCCHHHHHHHHHH
Confidence 355666544211111 2333444555556777888887777777777643 3457889999999999999999999999
Q ss_pred HHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 466 VTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 466 L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
..+++...+. ....+++...+.|.|.+..|=-++...+-.+++.-.
T Consensus 166 a~r~irK~P~-----l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 166 AVRFIRKVPD-----LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred HHHHHHcCch-----HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 9999886543 246789999999999999998888887777776644
|
|
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=96.32 E-value=1 Score=54.08 Aligned_cols=240 Identities=15% Similarity=0.181 Sum_probs=164.2
Q ss_pred hhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccc
Q 000146 211 MLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELIS 290 (2052)
Q Consensus 211 ~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~ 290 (2052)
.|-..+.+.|..+|+.|+.++.++...+.++ .|...+..-|-+.|-
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--------~L~~~ev~~L~~F~~-------------------------- 48 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--------FLSRQEVQVLLDFFC-------------------------- 48 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--------hccHHHHHHHHHHHH--------------------------
Confidence 4556677889999999999999988887432 244455544444332
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 000146 291 EDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLK 370 (2052)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~ 370 (2052)
+++ .+|.-=..++..+.+|++.+.+..+....+++.+.
T Consensus 49 ----------------------------------------~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~ 86 (262)
T PF14500_consen 49 ----------------------------------------SRL--DDHACVQPALKGLLALVKMKNFSPESAVKILRSLF 86 (262)
T ss_pred ----------------------------------------HHh--ccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHH
Confidence 122 12333345677777777666666566666666665
Q ss_pred HHhc-Cc-CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 000146 371 KLIT-DV-NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDV 447 (2052)
Q Consensus 371 k~l~-D~-N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l 447 (2052)
+.+. -+ -...+....+.+..+....+.....+...++..++..+ +||.|.-.--+...+..+... ..+....+++
T Consensus 87 ~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~--~~~~~~~e~l 164 (262)
T PF14500_consen 87 QNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE--FDISEFAEDL 164 (262)
T ss_pred HhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh--cccchhHHHH
Confidence 5433 22 22356666777777777665555556677888888877 677798877788888888776 4556777777
Q ss_pred HHHhh---------cCC-h--HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000146 448 KTSVK---------NKV-P--LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 448 ~~~L~---------~Kn-p--~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
.+.+. .+| | -.|.+...-|..|+..++ .+ -+..+|.+..-|..+.+.|+.-+.+++......+
T Consensus 165 Fd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~--~f---a~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 165 FDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTP--LF---APFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred HHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcH--hh---HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 65442 222 2 467777788888887543 22 3568899999999999999999999999999999
Q ss_pred CChhHHHhHhhccHHHHH
Q 000146 516 GMRPLERSIEKLDDVRRN 533 (2052)
Q Consensus 516 Ge~~~~~~l~~Ld~~k~k 533 (2052)
|...+.+++..+=+.-|.
T Consensus 240 ~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 240 GADSLSPHWSTIWNALKF 257 (262)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 988888888877554443
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.08 Score=65.92 Aligned_cols=191 Identities=17% Similarity=0.170 Sum_probs=135.2
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhccccCCC-CChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000146 897 LVKSLESPDWKVRLESIEAVNKILEEANKRIQP-AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 975 (2052)
Q Consensus 897 ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~-~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ 975 (2052)
+.....+..|+.|....-.+.++.. .+.++. ..+++++..|..+..|++.+++..|+++|+.++..+......|...
T Consensus 222 ~~ss~ts~~~~~ritd~Af~ael~~--~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~ 299 (533)
T KOG2032|consen 222 LLSSITSEKENGRITDIAFFAELKR--PKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT 299 (533)
T ss_pred cccccchhcccchHHHHHHHHHHhC--cccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH
Confidence 3445566789999999888888875 234442 2368999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHhcCchhhHHH-------HHHHHhcCccChhHHHHHHHHHHHHhccCCCC-
Q 000146 976 VLSDILKCLGD-NKKHMRECTLTVLDAWLAAVHLDKMVPY-------VTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF- 1046 (2052)
Q Consensus 976 llp~ll~~l~D-~k~~VR~aa~~aL~~i~~~~~l~~ll~~-------l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~- 1046 (2052)
++-.|+..|-| .+..|.=.+..||..+.+......+-++ +...+.+. +++.|...+-.... |..+...
T Consensus 300 ~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~-L~~l~g~~ 376 (533)
T KOG2032|consen 300 QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGA-LAKLAGGG 376 (533)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHH-HHHHcCCC
Confidence 99888877755 5567887888888888877654444332 22334444 57788776554442 2222221
Q ss_pred --Cch----hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhc
Q 000146 1047 --PDA----AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLK 1092 (2052)
Q Consensus 1047 --~~~----~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~ 1092 (2052)
... ..-..|++-.|+|+++-|-.|.+..+....-.++-+.+..++.
T Consensus 377 ~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q 428 (533)
T KOG2032|consen 377 WEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQ 428 (533)
T ss_pred chhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHh
Confidence 122 2233467778999999888887777766666666555555544
|
|
| >KOG2259 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.13 Score=65.79 Aligned_cols=287 Identities=16% Similarity=0.180 Sum_probs=168.9
Q ss_pred HHHhhh--chhhhHHHHHHHHHHHhhhChh-HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHh-CCCC---CChH---h
Q 000146 728 ISERVA--DIKTRAHAMKCLTTFSEAVGPG-FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF-GVSH---LKLK---D 797 (2052)
Q Consensus 728 LveKlg--d~K~r~~a~e~L~~l~E~~~~~-~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~f-G~~~---l~~k---~ 797 (2052)
|+.-.+ |.++|..|.+.|+++.|.+... ....+..+.+ .+-+-.||.++++.+.-.-+.+ +... -+.+ .
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~ 281 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDA 281 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHH
Confidence 444443 3678999999999999955543 3455555654 6777889999887766555544 2111 1111 1
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhc----CCCCCCCCCccccccc---
Q 000146 798 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK----NPFEGTVVPKKTVRAS--- 870 (2052)
Q Consensus 798 li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK----~~~~~~p~p~r~~r~~--- 870 (2052)
....+-.. +.|..-.||-.|.+++|.+-..-. .| +.++|++..-. -.+. .-.|.+...+.
T Consensus 282 aF~~vC~~-v~D~sl~VRV~AaK~lG~~~~vSe----e~-------i~QTLdKKlms~lRRkr~a-hkrpk~l~s~GewS 348 (823)
T KOG2259|consen 282 AFSSVCRA-VRDRSLSVRVEAAKALGEFEQVSE----EI-------IQQTLDKKLMSRLRRKRTA-HKRPKALYSSGEWS 348 (823)
T ss_pred HHHHHHHH-HhcCceeeeehHHHHhchHHHhHH----HH-------HHHHHHHHHhhhhhhhhhc-ccchHHHHhcCCcc
Confidence 22222233 778888899999999988764322 11 23444433211 0000 00011110000
Q ss_pred ccc---CCCCCCCCCCCCccccc-ccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc
Q 000146 871 EST---SSVSSGGSDGLPREDIS-GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS 946 (2052)
Q Consensus 871 ~~~---~~~~~~~~d~lpr~dIs-~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds 946 (2052)
..+ .+++.. .+....+.|. +---..|+.+++|.=+.+|..|+..+..+.... |.--..-+..|...|+|-
T Consensus 349 sGk~~~advpse-e~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-----P~FA~~aldfLvDMfNDE 422 (823)
T KOG2259|consen 349 SGKEWNADVPSE-EDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS-----PGFAVRALDFLVDMFNDE 422 (823)
T ss_pred cCccccccCchh-hccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHhccH
Confidence 000 000000 0001111110 001246778888888999999999999988632 232256788899999999
Q ss_pred hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCc
Q 000146 947 NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAK 1023 (2052)
Q Consensus 947 N~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~k 1023 (2052)
-..|+..|+..+..|+..+ ..-+..++.++..|-|....||++..+.|...- ... ++..+..+...|. +
T Consensus 423 ~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~-~~d~~~i~m~v~~lL~~L~--k 494 (823)
T KOG2259|consen 423 IEVVRLKAIFALTMISVHL-----AIREEQLRQILESLEDRSVDVREALRELLKNAR-VSDLECIDMCVAHLLKNLG--K 494 (823)
T ss_pred HHHHHHHHHHHHHHHHHHh-----eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHhh--h
Confidence 9999999999999999774 334667899999999999999999877665421 111 2223333333343 2
Q ss_pred cChhHHHHHHHHHHHHhccC
Q 000146 1024 LGAEGRKDLFDWLSKQLTGL 1043 (2052)
Q Consensus 1024 ~np~~R~~~l~~L~~~l~~~ 1043 (2052)
-|+-|-+++..|.+.=+++
T Consensus 495 -yPqDrd~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 495 -YPQDRDEILRCMGRIGQNH 513 (823)
T ss_pred -CCCCcHHHHHHHHHHhccC
Confidence 2666778888877654443
|
|
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.4 Score=59.18 Aligned_cols=305 Identities=18% Similarity=0.185 Sum_probs=151.3
Q ss_pred hhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchhHHHH
Q 000146 19 RLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKK 98 (2052)
Q Consensus 19 rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k 98 (2052)
+..|-.=|+|..|.--+..+.+.+. +. .|.-| .+....|+. ++. -+.++.-
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~--~~-~~ygy--w~~~~pd~~-------~~g-----------------~p~l~~l 54 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIE--KK-VLYGY--WSAFIPDTP-------ELG-----------------SPSLMTL 54 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhh--hh-hhhce--eeeecCCCC-------CCC-----------------CceeeEE
Confidence 3456667899988877776665432 22 24444 222233311 111 1445555
Q ss_pred HhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCC-----ChhHHHHHHHHHHHHHhhhhhhhHHHHHH
Q 000146 99 TVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-----RPKTVEKAQAVFMLWVELEAVDVFLDVME 173 (2052)
Q Consensus 99 ~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~-----r~~tk~~A~~~~l~~~e~~~~~~v~e~Ll 173 (2052)
.+.|.|+...--||+.+.+++..... +-....+.-+ -.+.. -..++ .+..|++...|.+
T Consensus 55 ~lkd~~~~~ra~alqv~~~~l~gsk~-fls~a~~~~~----~~ftpf~v~~a~si~-~~~r~l~~~l~~e---------- 118 (728)
T KOG4535|consen 55 TLKDPSPKTRACALQVLSAILEGSKQ-FLSVAEDTSD----HAFTPFSVMIACSIR-ELHRCLLLALVAE---------- 118 (728)
T ss_pred ecCCCChhHHHHHHHHHHHHHHhhHH-HHHHHhccCC----cCCCchHHHHHHHHH-HHHHHHHHHHHHh----------
Confidence 78999999999999999888765433 1111110000 00000 00111 1233333333332
Q ss_pred HHhhccChhhHHHHHHHHHHHHHHhCCCCcC---hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhh
Q 000146 174 KAIKNKVAKAVVPAIDVMFQALSEFGAKIIP---PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEK 250 (2052)
Q Consensus 174 ~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~---~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~ 250 (2052)
-.|.++..|+.||..++.+-....+. +-.+..++.++..|.|++||-.+..++..|..--. -
T Consensus 119 -----~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~----------~ 183 (728)
T KOG4535|consen 119 -----SSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHA----------P 183 (728)
T ss_pred -----cCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCC----------C
Confidence 34667778888888777653333222 33566778899999999999999888766543221 1
Q ss_pred ChHHHHHHHHHHHHh--ccCC-CCCCccchhhhhHhhhhcccccCCCCCCCCCC--CCCCCCCCCCCCCCCcccccCcCc
Q 000146 251 MRDTMKKELEVELVN--VSGT-ARPTRKIRAEQDKELGQELISEDVGPGPSEES--TADVPPEIDEYELVDPVDILTPLE 325 (2052)
Q Consensus 251 Lkp~qlkeLe~~f~~--~~~~-~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iD~~dl~~~vdIl~kl~ 325 (2052)
++++|. .|...... ..-+ ..|+... + +.. ++++.+. ..++...-.|--++.++--..-++
T Consensus 184 ~pei~~-~~~~~~s~~n~~~~h~s~~~~~---~--~l~---------~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~ 248 (728)
T KOG4535|consen 184 LPEVQL-LLQQPCSSSNSATPHLSPPDWW---K--KLP---------AGPSLEETSVSSPKGSSEPCWLIRLCISIVVLP 248 (728)
T ss_pred CHHHHH-HhcCCCccccccCCCCCChHHH---H--hcC---------CCchhhhhccCCccCCCCCcceeeeeeeeeecC
Confidence 222222 12100000 0000 0011000 0 000 0000000 000001111222233322112222
Q ss_pred cchhhh------hccc--CChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhh
Q 000146 326 KSGFWE------GVKA--TKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT 397 (2052)
Q Consensus 326 ~~~f~~------~l~s--~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~ 397 (2052)
+.+-+. .+++ .---.|.|+++-|..++..-.+...-+.++.+.+.+.+.|.-+.+-.-+..|+..+..++..
T Consensus 249 ~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~ 328 (728)
T KOG4535|consen 249 KEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQ 328 (728)
T ss_pred CccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhh
Confidence 222221 1111 12346888888887766322222234567778888888899999999999999999998874
Q ss_pred c
Q 000146 398 H 398 (2052)
Q Consensus 398 ~ 398 (2052)
.
T Consensus 329 ~ 329 (728)
T KOG4535|consen 329 Q 329 (728)
T ss_pred h
Confidence 4
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.039 Score=54.30 Aligned_cols=86 Identities=23% Similarity=0.359 Sum_probs=70.0
Q ss_pred HHHHHHHh-ccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000146 407 LPVLLEKL-KEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 485 (2052)
Q Consensus 407 lp~LL~kl-kdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 485 (2052)
+|.|++.+ .++.+.||..+..+|.. ..-..+++.+...+++++|.||..++..|..+ . -+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~----------~~~~ 63 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGE------LGDPEAIPALIELLKDEDPMVRRAAARALGRI-G----------DPEA 63 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHC------CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H----------HHHT
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHH------cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C----------CHHH
Confidence 57889989 89999999887777662 34568899999999999999999999999874 1 1557
Q ss_pred HHHHHHhhcC-CChHHHHHHHHHHH
Q 000146 486 VPICMECLND-GTPEVRDAAFSVLA 509 (2052)
Q Consensus 486 ~p~l~k~l~D-s~~~VR~aA~~~l~ 509 (2052)
++.+.+.+.| .+..||.+|.++|+
T Consensus 64 ~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 64 IPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 7888888866 45677999999885
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.02 Score=56.45 Aligned_cols=85 Identities=26% Similarity=0.366 Sum_probs=69.1
Q ss_pred HHHHhhc-CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000146 895 PTLVKSL-ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 973 (2052)
Q Consensus 895 ~~ll~~l-~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~ 973 (2052)
+.|++.+ ++++|.+|.+++..|.++- -.++++.|...++|.|..|+..|+..|+.+. .
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-----------DPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 4577777 8999999999999997432 2578999999999999999999999999773 2
Q ss_pred hHHHHHHHHHhCC-CcHHHHHHHHHHHH
Q 000146 974 KGVLSDILKCLGD-NKKHMRECTLTVLD 1000 (2052)
Q Consensus 974 ~~llp~ll~~l~D-~k~~VR~aa~~aL~ 1000 (2052)
+..++.+.+.+.+ ....||.+|..+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 5578888888876 45677999888874
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.035 Score=57.64 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=83.8
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC----HH-HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000146 406 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----LV-DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 480 (2052)
Q Consensus 406 llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~----l~-~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 480 (2052)
+++.+++.+.+....++..+..++..++...... .. .+++.+...+.+.++.++..++..|.++....+.. ...
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN-KLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH-HHH
Confidence 7888999999999999999999999988641000 12 66778888899999999999999999987654322 222
Q ss_pred hh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 481 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 481 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
.. ..+++.+.+++++.+.++|..+..+++.+.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 23 348999999999999999999999998764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.14 Score=58.07 Aligned_cols=106 Identities=16% Similarity=0.254 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH-HHHHHHHHhhcCC
Q 000146 377 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD-VVEDVKTSVKNKV 455 (2052)
Q Consensus 377 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~-ll~~l~~~L~~Kn 455 (2052)
|+.|+..++.+++.|+.... ..+...+|.+...+.|..+.||..+..+|..++..+...+.. ++..++..+.+.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 56788999999999987554 456666889999999999999999999999998864444444 4478888899999
Q ss_pred hHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000146 456 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 486 (2052)
Q Consensus 456 p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 486 (2052)
+.||..+..++..+.....+..+..++.+++
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i 107 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELI 107 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999999888744444533333333
|
|
| >KOG2032 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.24 Score=61.87 Aligned_cols=211 Identities=16% Similarity=0.146 Sum_probs=140.3
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~-~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 406 (2052)
.+.+.+.+.+|+.|....-.+..+...+.+.. +..++++-.+.....|++..++..||.+|+.++.++-...-.|...+
T Consensus 221 q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ 300 (533)
T KOG2032|consen 221 QLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ 300 (533)
T ss_pred hcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH
Confidence 45566788999999988887777765444443 67889999999999999999999999999999999777777788888
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHHHHHh-cCCCHHHHH----HHHHHHhhcCChHHHHHHHHHHHHHHHhcChh---H
Q 000146 407 LPVLLEKLKEK-KPTVAESLTQTLQAMHKA-GCLNLVDVV----EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA---A 477 (2052)
Q Consensus 407 lp~LL~klkdk-K~~V~~aa~~aL~ai~~~-~~~~l~~ll----~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~---~ 477 (2052)
+-+++..+-|. +..|.=.+..+|..+... ....+..++ -.+-...++-++++|..+...++.+..-+... .
T Consensus 301 ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~ 380 (533)
T KOG2032|consen 301 LDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEF 380 (533)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhh
Confidence 88888777654 466666667777766654 112222222 22334556889999999998888876654322 1
Q ss_pred HHH-hhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHH
Q 000146 478 VLK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 539 (2052)
Q Consensus 478 l~~-~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~ 539 (2052)
|.. ..+.+.| +.-.++|++|.|-.|....+-+..--++-+....++++.-+..+..+.+++
T Consensus 381 Fte~v~k~~~~-lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fy 442 (533)
T KOG2032|consen 381 FTEQVKKRLAP-LLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDMARFQAFY 442 (533)
T ss_pred hHHHHHhcccc-ceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHH
Confidence 221 1223333 344579999999666666554444434433345555533233333455544
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.23 Score=61.11 Aligned_cols=185 Identities=18% Similarity=0.145 Sum_probs=122.7
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCC---CChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhC--hhhH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQP---AGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMG--PAVE 970 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~---~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg--~~~~ 970 (2052)
+.+..+.+++-+.|.+||+.+..++.. ..... ..+..|+..+.+.++-....=...|+++++.++-.+| ..-.
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~--~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSS--RYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 566778899999999999999999973 21211 1246778888888865555667889999999999987 6667
Q ss_pred HhhhHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHhcC--chhh------HHHHHHH--Hh-cCc-------cChhHHH
Q 000146 971 KSSKGVLSDILKCLGDNKK--HMRECTLTVLDAWLAAVH--LDKM------VPYVTTA--LT-DAK-------LGAEGRK 1030 (2052)
Q Consensus 971 ~~~~~llp~ll~~l~D~k~--~VR~aa~~aL~~i~~~~~--l~~l------l~~l~~~--L~-~~k-------~np~~R~ 1030 (2052)
...+.+.|.+...+.|... .+|.++..||..+.-.++ .+.+ +..++.. ++ +++ .++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 7888899999998888654 567888888876655433 2222 2222221 11 111 0123443
Q ss_pred H-HHHHHHHHhccCCC---CCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1031 D-LFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1031 ~-~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
. +-.| .-++...+. ...+...++.+...|+..+.+||.+|-++|..++....
T Consensus 205 aAL~aW-~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAW-ALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHH-HHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 3 3334 223333332 11233455558888999999999999999998877666
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.014 Score=60.58 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=83.5
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh-hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 973 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~-~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~ 973 (2052)
+.+.+.+.+.+|..|..++..|..+.... +....... .++++.|...|.|.|..|+..|+.+++.|+..-......+.
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 88 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVL 88 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 46777888889999999999999988531 11111111 36788888899999999999999999999976544444444
Q ss_pred h-HHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000146 974 K-GVLSDILKCLGDNKKHMRECTLTVLDAWL 1003 (2052)
Q Consensus 974 ~-~llp~ll~~l~D~k~~VR~aa~~aL~~i~ 1003 (2052)
. .+++.+++.+.+.+..++..+..+|..++
T Consensus 89 ~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 89 EAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 48999999999999999999998888764
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.064 Score=60.35 Aligned_cols=138 Identities=22% Similarity=0.290 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHh-hhcchhhhhhHHHHH-----------HH-HhccCcHHHHHHHHHHHHHHHHhc---------
Q 000146 379 AVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVL-----------LE-KLKEKKPTVAESLTQTLQAMHKAG--------- 436 (2052)
Q Consensus 379 ~V~~~A~~~l~~La~~L-~~~f~~~~~~llp~L-----------L~-klkdkK~~V~~aa~~aL~ai~~~~--------- 436 (2052)
+|+..|+.|++.+++.. ++.|..|+..++|.- +. -++|..+.||.++..++.+++...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 37889999999999984 456788888888765 32 347999999999999999999761
Q ss_pred ----C---CC----HHHHHHH----HHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHhhcCCChH
Q 000146 437 ----C---LN----LVDVVED----VKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLNDGTPE 499 (2052)
Q Consensus 437 ----~---~~----l~~ll~~----l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~l~Ds~~~ 499 (2052)
. ++ +..++-. +..+++ .+++.+-.+.++.+..+++.++-..+. .++..++..+...+.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0 11 2333333 344555 567888889999999999887755554 56788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC
Q 000146 500 VRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 500 VR~aA~~~l~~l~~~~G 516 (2052)
||-++.-|++.+..+.+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999998876543
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.014 Score=45.91 Aligned_cols=30 Identities=50% Similarity=0.717 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 485 YVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 485 l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
++|.+.++++|++++||.+|..|++.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.1 Score=59.18 Aligned_cols=324 Identities=18% Similarity=0.213 Sum_probs=192.7
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhh-hhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhh--hhhhH
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADA-DAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELE--AVDVF 168 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~-~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~--~~~~v 168 (2052)
.+.++.++.|+|+.|-..|+.+|....+.-.. ........++..++++ +. =-.--+-.-++++..|+--+ ..+.+
T Consensus 162 ~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~a-l~ec~EW~qi~IL~~l~~y~p~d~~ea~~i 240 (734)
T KOG1061|consen 162 VDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEA-LNECTEWGQIFILDCLAEYVPKDSREAEDI 240 (734)
T ss_pred hHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHH-HHHhhhhhHHHHHHHHHhcCCCCchhHHHH
Confidence 67778889999999999999999887766432 1111222333444433 21 01112223444444444322 23578
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHHHhCC-CCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHH
Q 000146 169 LDVMEKAIKNKVAKAVVPAIDVMFQALSEFGA-KIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTIL 247 (2052)
Q Consensus 169 ~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~-~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L 247 (2052)
++.+.+.+.|-|+-++.+++..+...+..+-. ...-.+.+-+.+..+++... .+- --.+++++ .+
T Consensus 241 ~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~q-------yvaLrNi~------li 306 (734)
T KOG1061|consen 241 CERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQ-------YVALRNIN------LI 306 (734)
T ss_pred HHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhh-------HHHHhhHH------HH
Confidence 88889999999999999999998888776644 00012222233333332211 111 11122221 01
Q ss_pred HhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccc
Q 000146 248 FEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKS 327 (2052)
Q Consensus 248 ~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~ 327 (2052)
+...+.....++...|-+. .||
T Consensus 307 l~~~p~~~~~~~~~Ff~ky------------------------------------------------nDP---------- 328 (734)
T KOG1061|consen 307 LQKRPEILKVEIKVFFCKY------------------------------------------------NDP---------- 328 (734)
T ss_pred HHhChHHHHhHhHeeeeec------------------------------------------------CCc----------
Confidence 1111111111221111110 111
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 407 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 407 (2052)
.| .+.+-++.+..+++. .+..++...|+..-.+..+..+..|++|||.+|...... ..++
T Consensus 329 -iY---------vK~eKleil~~la~~-----~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv 388 (734)
T KOG1061|consen 329 -IY---------VKLEKLEILIELAND-----ANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCV 388 (734)
T ss_pred -hh---------hHHHHHHHHHHHhhH-----hHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhH
Confidence 11 123445666665532 235567788888888999999999999999999887654 5688
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYV 486 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~ 486 (2052)
..||+.+.-+...|++.+...+..++.+..-..+.++..+...+. -.+|..|......++...+..+. ...++
T Consensus 389 ~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~------a~elL 462 (734)
T KOG1061|consen 389 SILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIEN------ALELL 462 (734)
T ss_pred HHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCc------HHHHH
Confidence 999999988888888888899999998822234667777766555 34688886555445444433222 25677
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000146 487 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 487 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~ 518 (2052)
..+.+.+.|...+| ..+.+.+.+++|+.+
T Consensus 463 ~~f~en~~dE~~~V---ql~LLta~ik~Fl~~ 491 (734)
T KOG1061|consen 463 ESFLENFKDETAEV---QLELLTAAIKLFLKK 491 (734)
T ss_pred HHHHhhcccchHHH---HHHHHHHHHHHHhcC
Confidence 77888888888887 567777778877744
|
|
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.067 Score=59.74 Aligned_cols=120 Identities=19% Similarity=0.293 Sum_probs=98.3
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHh-ccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHH---HHHhChh
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEE-ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV---ASAMGPA 968 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~-a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~l---a~alg~~ 968 (2052)
+.+-|++++...+---|.-|.+.+.+++.. +..+|.|-. .+|+..|+.-|+..|..|...+|++|..| ....|..
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 346788999888777788889999999886 666777764 89999999999999999999999999999 7788999
Q ss_pred hHHhhhHHHHHHH----HH--hC-----CCcHHHHHHHHHHHHHHHHhcCchhhHH
Q 000146 969 VEKSSKGVLSDIL----KC--LG-----DNKKHMRECTLTVLDAWLAAVHLDKMVP 1013 (2052)
Q Consensus 969 ~~~~~~~llp~ll----~~--l~-----D~k~~VR~aa~~aL~~i~~~~~l~~ll~ 1013 (2052)
+.+|.++++|.+- .+ ++ ..++.+++-..++|..+-++.|.+.++.
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~n 173 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFIN 173 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHH
Confidence 9999999999775 11 22 2456788888889998888888665543
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.1 Score=58.20 Aligned_cols=263 Identities=11% Similarity=0.145 Sum_probs=144.8
Q ss_pred HHHHHhCCCCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCC
Q 000146 193 QALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARP 272 (2052)
Q Consensus 193 ~~l~~FG~~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p 272 (2052)
.-|..|+..-+ -+++-..+..|++|+-+-||..|+.++--+|-.- ++++++.+ +.|+ ++++.+- |
T Consensus 131 ~GLS~fvTpdL-ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr~~F-prL~-----------EkLeDpD-p 195 (877)
T KOG1059|consen 131 SGLSCIVTPDL-ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALRPCF-PRLV-----------EKLEDPD-P 195 (877)
T ss_pred cccccccCchh-hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHhhhH-HHHH-----------HhccCCC-c
Confidence 45567887432 3678888889999999999999998887777666 45566553 4332 2222110 0
Q ss_pred CccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcc--cCChHHHHHHHHHHHH
Q 000146 273 TRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK--ATKWSERKDAVAELTK 350 (2052)
Q Consensus 273 ~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~--s~kWkeR~eaL~~L~~ 350 (2052)
.+-|... + +- .+- + -=+| .+-+.-- +.||+.+. +.+|--=+ -++-+.+
T Consensus 196 --~V~SAAV--------~-VI-CEL----A-----rKnP------knyL~LA--P~ffkllttSsNNWmLIK-iiKLF~a 245 (877)
T KOG1059|consen 196 --SVVSAAV--------S-VI-CEL----A-----RKNP------QNYLQLA--PLFYKLLVTSSNNWVLIK-LLKLFAA 245 (877)
T ss_pred --hHHHHHH--------H-HH-HHH----H-----hhCC------ccccccc--HHHHHHHhccCCCeehHH-HHHHHhh
Confidence 0000000 0 00 000 0 0011 1222222 36888774 57895321 2233333
Q ss_pred Hhc-CCCCCCCChHHHHHHHHHHhcCcC-HHHHHHHHHHHHH--HHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHH
Q 000146 351 LAS-TKRIAPGDFTEVCRTLKKLITDVN-IAVAVEAIQAIGN--LARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLT 426 (2052)
Q Consensus 351 L~~-~~ki~~~dy~~l~~~L~k~l~D~N-~~V~~~A~~~l~~--La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~ 426 (2052)
|.- .||+-. .|+.-|...+.... -.+..++++|+-. |..|+...+ ..+..++.-|=.-+-|..++..=-+.
T Consensus 246 LtplEPRLgK----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~-asiqLCvqKLr~fiedsDqNLKYlgL 320 (877)
T KOG1059|consen 246 LTPLEPRLGK----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHS-ASIQLCVQKLRIFIEDSDQNLKYLGL 320 (877)
T ss_pred ccccCchhhh----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcH-HHHHHHHHHHhhhhhcCCccHHHHHH
Confidence 331 344332 34444444444222 2244444444322 223343333 34666677776677788888888888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCCh-HHHHHHH
Q 000146 427 QTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP-EVRDAAF 505 (2052)
Q Consensus 427 ~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~-~VR~aA~ 505 (2052)
-|+.-+.......+..-.+.|+.+|.+|.+.+|..++..|.-++.. . .+.+|+..|+..+.+++. ..|+.-.
T Consensus 321 lam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk---k----Nl~eIVk~LM~~~~~ae~t~yrdell 393 (877)
T KOG1059|consen 321 LAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK---K----NLMEIVKTLMKHVEKAEGTNYRDELL 393 (877)
T ss_pred HHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh---h----hHHHHHHHHHHHHHhccchhHHHHHH
Confidence 8888887631112333445678899999999999999999887753 2 236677777777777776 5565544
Q ss_pred HHHHHHH
Q 000146 506 SVLAAIA 512 (2052)
Q Consensus 506 ~~l~~l~ 512 (2052)
--+-.++
T Consensus 394 ~~II~iC 400 (877)
T KOG1059|consen 394 TRIISIC 400 (877)
T ss_pred HHHHHHh
Confidence 4443333
|
|
| >KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.2 Score=57.96 Aligned_cols=180 Identities=14% Similarity=0.182 Sum_probs=106.2
Q ss_pred ccHHHHhhcCC--CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHhC-hh
Q 000146 893 FTPTLVKSLES--PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMG-PA 968 (2052)
Q Consensus 893 i~~~ll~~l~d--~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D-sN~~V~~~Al~~l~~la~alg-~~ 968 (2052)
+.|.|++.|.+ .||- |-.|-++.. +-.-+.|..-..|+..|...+.. +-..+.-.+++++-...-.-| ++
T Consensus 219 LAP~ffkllttSsNNWm-----LIKiiKLF~-aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d 292 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWV-----LIKLLKLFA-ALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD 292 (877)
T ss_pred ccHHHHHHHhccCCCee-----hHHHHHHHh-hccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC
Confidence 56788888744 4895 333444432 22446666656788888877743 344455555555443321222 24
Q ss_pred hHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC
Q 000146 969 VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1046 (2052)
Q Consensus 969 ~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~ 1046 (2052)
-...+..++..+=..+-|+.++.+=-+..|+..++..-+ ....-+.+...|.++ ++.+|..++..+...+.+
T Consensus 293 ~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVsk---- 366 (877)
T KOG1059|consen 293 HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVSK---- 366 (877)
T ss_pred cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhhh----
Confidence 445566667777777778888888888788877776432 223344677777765 467788888777665543
Q ss_pred CchhhhHHHHHhhcCCCCH-HHHHHHHHHHHHHHHHcCh
Q 000146 1047 PDAAHLLKPASIAMTDKSS-DVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1047 ~~~~~ll~pl~~~L~D~~~-dVRkaA~~~L~~l~~~~G~ 1084 (2052)
..+..+++-|...+.+..+ ..|..-..-+..+...-.|
T Consensus 367 kNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY 405 (877)
T KOG1059|consen 367 KNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY 405 (877)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence 2456666767776666555 5555444444334333333
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=1.8 Score=57.11 Aligned_cols=52 Identities=17% Similarity=0.056 Sum_probs=37.1
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCch-hhhHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1025 GAEGRKDLFDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1025 np~~R~~~l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
|..+|.++...|++.... ...+ ..+..-+..|+.|++.+||+.|...+..+-
T Consensus 479 n~ivRaaAv~alaKfg~~---~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFGAQ---DVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhHHHHHHHHHHHhcC---CCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 345888888888865421 1222 334445778999999999999999887766
|
|
| >KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.45 E-value=2.4 Score=56.13 Aligned_cols=374 Identities=15% Similarity=0.197 Sum_probs=200.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 722 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 722 (2052)
..++..+.+.||..|--|+..+..+ ..+...+.++.-+.+ +++|.+.-|...+--.+..+....++... ..
T Consensus 89 nt~~kD~~d~np~iR~lAlrtm~~l-----~v~~i~ey~~~Pl~~--~l~d~~~yvRktaa~~vakl~~~~~~~~~--~~ 159 (734)
T KOG1061|consen 89 NTFLKDCEDPNPLIRALALRTMGCL-----RVDKITEYLCDPLLK--CLKDDDPYVRKTAAVCVAKLFDIDPDLVE--DS 159 (734)
T ss_pred hhhhccCCCCCHHHHHHHhhceeeE-----eehHHHHHHHHHHHH--hccCCChhHHHHHHHHHHHhhcCChhhcc--cc
Confidence 3456788899999999999876522 111122333333332 46777777776665444444332222111 12
Q ss_pred HHHHHHHHhhhch--hhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH----hC
Q 000146 723 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNPKVLSEGILWMVSAVED----FG 789 (2052)
Q Consensus 723 ~il~~LveKlgd~--K~r~~a~e~L~~l~E~~~~-------~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~----fG 789 (2052)
-+++.|-+-+.|. -+-..|..+|..+.|.... ..+...++.. ..+|-+|-.-.|-+ |-
T Consensus 160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~a---------l~ec~EW~qi~IL~~l~~y~ 230 (734)
T KOG1061|consen 160 GLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEA---------LNECTEWGQIFILDCLAEYV 230 (734)
T ss_pred chhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHH---------HHHhhhhhHHHHHHHHHhcC
Confidence 2344455555554 3556666777777775531 1233333333 23555554433322 22
Q ss_pred C-CCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccc
Q 000146 790 V-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVR 868 (2052)
Q Consensus 790 ~-~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r 868 (2052)
+ ...+...+++.+... |.|.|+.|-=++.+++..+-.++..--..++..+.|.+...+..+=+ ..+ ...|.++
T Consensus 231 p~d~~ea~~i~~r~~p~-Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e-~qy----vaLrNi~ 304 (734)
T KOG1061|consen 231 PKDSREAEDICERLTPR-LQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSESE-IQY----VALRNIN 304 (734)
T ss_pred CCCchhHHHHHHHhhhh-hccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccch-hhH----HHHhhHH
Confidence 2 233556788888877 99999999888888776555444321111222222222111111000 000 0000000
Q ss_pred cccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchH
Q 000146 869 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 948 (2052)
Q Consensus 869 ~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~ 948 (2052)
- .....| .+...-..-|+-+..|.-+ +..+-++.+..++..+ ...++..-|+..-.+-+.
T Consensus 305 l----------il~~~p--~~~~~~~~~Ff~kynDPiY-vK~eKleil~~la~~~-------nl~qvl~El~eYatevD~ 364 (734)
T KOG1061|consen 305 L----------ILQKRP--EILKVEIKVFFCKYNDPIY-VKLEKLEILIELANDA-------NLAQVLAELKEYATEVDV 364 (734)
T ss_pred H----------HHHhCh--HHHHhHhHeeeeecCCchh-hHHHHHHHHHHHhhHh-------HHHHHHHHHHHhhhhhCH
Confidence 0 000000 0110000112222233333 3455666666666533 146788888888889999
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCccCh
Q 000146 949 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 1026 (2052)
Q Consensus 949 ~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k~np 1026 (2052)
..+..|+++++.+|...-.. ..++..+++.+.-+...|.+.+...+..+.+.++ .+.+++.+...+.+= .+|
T Consensus 365 ~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl-~ep 438 (734)
T KOG1061|consen 365 DFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCENLDSL-QEP 438 (734)
T ss_pred HHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhccccccc-CCh
Confidence 99999999999998665433 5678888888888888888888888998888886 456666555544421 146
Q ss_pred hHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHH
Q 000146 1027 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRK 1069 (2052)
Q Consensus 1027 ~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRk 1069 (2052)
+.|.. +-|+....... -++...++.-++....|....|+-
T Consensus 439 eak~a-miWilg~y~~~--i~~a~elL~~f~en~~dE~~~Vql 478 (734)
T KOG1061|consen 439 EAKAA-LIWILGEYAER--IENALELLESFLENFKDETAEVQL 478 (734)
T ss_pred HHHHH-HHHHHhhhhhc--cCcHHHHHHHHHhhcccchHHHHH
Confidence 66554 44554322221 123455566666666666665554
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=95.30 E-value=6.6 Score=49.93 Aligned_cols=312 Identities=16% Similarity=0.200 Sum_probs=184.9
Q ss_pred hhcCCHHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHhc----CCCCcc-cHHHHHHHHHHHHHHHHHHc---C
Q 000146 649 LKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCM----LPGWSE-KNVQVQQQVIEVINYLAATA---T 714 (2052)
Q Consensus 649 L~s~~Wk~Rl~ale~L~~~v~~~~~~------~~~~~~Lv~~L~~----~pg~~D-sN~qV~~~~Le~l~~l~~~~---~ 714 (2052)
|.+.+=-.|++||..|...++..+.. ....+.+++++.. .++=++ -+..+..+++.++..++... .
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 45556667999999999888774322 1123455555432 122233 36778899999999887541 3
Q ss_pred CCchhhHHHHHHHHHHhhhchhh-hHHHHHHHHHHHh-hhChhH----HHHHHHHHH---hh-CCCHHHHHHHHHHHHHH
Q 000146 715 KFPKKCVVLCLLGISERVADIKT-RAHAMKCLTTFSE-AVGPGF----IFERLYKIM---KD-HKNPKVLSEGILWMVSA 784 (2052)
Q Consensus 715 ~~~~~~~~~il~~LveKlgd~K~-r~~a~e~L~~l~E-~~~~~~----Vl~~L~~~l---~~-~KnpKv~~e~L~~L~~~ 784 (2052)
.++......++...++.+.++.. |..+...|.-+.+ .+++.+ ....++..+ .+ -++.-+..|.+..+..+
T Consensus 82 ~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 82 TLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred hCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 34555555688888888877653 5555555655554 455543 233333332 22 35556788999999999
Q ss_pred HHHhCCCCC-ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000146 785 VEDFGVSHL-KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 863 (2052)
Q Consensus 785 i~~fG~~~l-~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p 863 (2052)
+..+...-. +...-++.+... +-++...+|..|+.+...+...+|+.- .+.+.+.+.++..-.
T Consensus 162 l~q~p~~M~~~~~~W~~~l~~~-l~~~~k~ir~~a~~l~~~~~~~l~~~~---------~~s~~~~~~~~~~~~------ 225 (372)
T PF12231_consen 162 LSQFPQQMIKHADIWFPILFPD-LLSSAKDIRTKAISLLLEAKKCLGPNK---------ELSKSVLEDLQRSLE------ 225 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHHHHHHHhChhH---------HHHHHHHHHhccccc------
Confidence 987764311 223344444444 678899999999999999988888531 112222333221100
Q ss_pred ccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCC-CChHHHHHHHHHHH---HHHHhccccCCC-CChhhHHHH
Q 000146 864 KKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDWKVRLESIEAVN---KILEEANKRIQP-AGTGELFGG 938 (2052)
Q Consensus 864 ~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d-~~Wk~R~eale~L~---~ll~~a~~~I~~-~~~~eL~~a 938 (2052)
+. -+...+.+.+...+.+ ++++ .+++-.. .++. ++.+.. ..+.+.+..
T Consensus 226 ---------------------~~-~~~~~~~~~L~~mi~~~~~~~---~a~~iW~~~i~LL~--~~~~~~w~~~n~wL~v 278 (372)
T PF12231_consen 226 ---------------------NG-KLIQLYCERLKEMIKSKDEYK---LAMQIWSVVILLLG--SSRLDSWEHLNEWLKV 278 (372)
T ss_pred ---------------------cc-cHHHHHHHHHHHHHhCcCCcc---hHHHHHHHHHHHhC--CchhhccHhHhHHHHH
Confidence 00 0001122233333444 2222 2222222 2221 122222 336788888
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHhChh---hHHhhhHHHHHHHHHhCCCc-----HHHHHHHHHHHHHHH
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAMGPA---VEKSSKGVLSDILKCLGDNK-----KHMRECTLTVLDAWL 1003 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~alg~~---~~~~~~~llp~ll~~l~D~k-----~~VR~aa~~aL~~i~ 1003 (2052)
....++.++..++..|+.+...+.-.+..+ ..+.++.+..++...+...+ ..+|.++..++..+.
T Consensus 279 ~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~ll 351 (372)
T PF12231_consen 279 PEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLL 351 (372)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchH
Confidence 889999999999999999999999877654 34667778888877775322 266777766666544
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.32 Score=60.80 Aligned_cols=174 Identities=21% Similarity=0.208 Sum_probs=118.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+.++..+.+.+|-+|..+...+..+= -.+.++.|...+.|.+..|+..|..+++.+- .+
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 46778889999999999998865442 2678999999999999999999998655432 24
Q ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcc--------Ch--hHHHHHHHHHHHHhccC
Q 000146 975 GVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL--------GA--EGRKDLFDWLSKQLTGL 1043 (2052)
Q Consensus 975 ~llp~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~--------np--~~R~~~l~~L~~~l~~~ 1043 (2052)
..++.++..+. |.+..||..+..+|..+...-. +..+...+.+... .+ .+|..+..-+...
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~---- 176 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDERA----LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL---- 176 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----
Confidence 56777777777 8999999999999988765443 3444455544310 01 2454444444321
Q ss_pred CCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc--ChhHHHHHhccCChHHHHH
Q 000146 1044 SGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAG--GQETIEKNLKDIQGPALAL 1101 (2052)
Q Consensus 1044 ~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~--G~e~~~~~l~~L~~~~~~~ 1101 (2052)
.....+.++...+.|...+||.+|..++..+.... ..+.+.+.+.+-....+..
T Consensus 177 ----~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~ 232 (335)
T COG1413 177 ----GDPEAIPLLIELLEDEDADVRRAAASALGQLGSENVEAADLLVKALSDESLEVRKA 232 (335)
T ss_pred ----CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHH
Confidence 22445666888899999999999999998877663 3244444444444333333
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.12 E-value=5.5 Score=51.99 Aligned_cols=335 Identities=17% Similarity=0.150 Sum_probs=200.2
Q ss_pred HhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCC-ChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 000146 99 TVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIK 177 (2052)
Q Consensus 99 ~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~-r~~tk~~A~~~~l~~~e~~~~~~v~e~Ll~~l~ 177 (2052)
.++.+-..-..-|.-++..+++...+ ....++..+- |=|.+ .+.-.-.|+.|+-.+=+.+-.+.+...+-+.+-
T Consensus 82 LLss~kysEKqIGYl~is~L~n~n~d----l~klvin~ik-nDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLv 156 (938)
T KOG1077|consen 82 LLSSNKYSEKQIGYLFISLLLNENSD----LMKLVINSIK-NDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLV 156 (938)
T ss_pred HhhcCCccHHHHhHHHHHHHHhcchH----HHHHHHHHHH-hhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHh
Confidence 34444444455666666666655432 2333444433 33554 444555788888877666656666666655442
Q ss_pred c--cChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHH
Q 000146 178 N--KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTM 255 (2052)
Q Consensus 178 ~--K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~q 255 (2052)
. --+=|+..+..||..+++.+-. .+++..+...+..+++|.+-.|-.++..++..|.++..+. .+.. -+-+
T Consensus 157 S~~~~~~vkqkaALclL~L~r~spD-l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~-yk~~-----~~~a 229 (938)
T KOG1077|consen 157 SGSSMDYVKQKAALCLLRLFRKSPD-LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPES-YKTC-----LPLA 229 (938)
T ss_pred CCcchHHHHHHHHHHHHHHHhcCcc-ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHH-Hhhh-----HHHH
Confidence 2 2344556666777777777543 6778889999999999999999999999999999988532 3222 2334
Q ss_pred HHHHHHHHHhccCC---------CCCC---ccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCc
Q 000146 256 KKELEVELVNVSGT---------ARPT---RKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTP 323 (2052)
Q Consensus 256 lkeLe~~f~~~~~~---------~~p~---R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~k 323 (2052)
+..|....-...-. +.|. ..+|--|.- +.+ + +. ..-.--.+.+ ..||.|
T Consensus 230 vs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~--p~~---~---D~---------~~r~~l~evl--~~iLnk 290 (938)
T KOG1077|consen 230 VSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY--PTP---E---DP---------STRARLNEVL--ERILNK 290 (938)
T ss_pred HHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC--CCC---C---Cc---------hHHHHHHHHH--HHHHhc
Confidence 45554433221100 1121 111211110 000 0 00 0000000000 122222
Q ss_pred CccchhhhhcccCChHHHHH---HHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcch
Q 000146 324 LEKSGFWEGVKATKWSERKD---AVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 400 (2052)
Q Consensus 324 l~~~~f~~~l~s~kWkeR~e---aL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~ 400 (2052)
.- +-..++|-+++-. .|-+...++.+-.-.+.-+..-+..|.+.|.+.-.+++..|+.....|+.. .|.
T Consensus 291 ~~-----~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s 362 (938)
T KOG1077|consen 291 AQ-----EPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFS 362 (938)
T ss_pred cc-----cCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cch
Confidence 21 1123455544432 233333444333333345777888888889877777799998877777754 342
Q ss_pred -hhhhhHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC
Q 000146 401 -GSSRFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS 474 (2052)
Q Consensus 401 -~~~~~llp~LL~klk-dkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~ 474 (2052)
..++.-.-.++..++ |+..+||.-+...|-+|+.. ....+|+++++..+.+-.+++|++...=++.+.+...
T Consensus 363 ~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~--~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 363 IDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV--SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch--hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence 234444677888888 88999999999999999985 6788999999999999999999998777776666554
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.09 E-value=13 Score=49.73 Aligned_cols=322 Identities=14% Similarity=0.093 Sum_probs=174.4
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 000146 98 KTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAI 176 (2052)
Q Consensus 98 k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~~~v~e~Ll~~l 176 (2052)
|.+.+.|+.-.-.|.-++.-|+....+ +-.++..-+.|=|. +..-+.-.|+-.+-.++.-|=.-.+...+...+
T Consensus 77 KLias~~f~dKRiGYLaamLlLdE~qd-----vllLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll 151 (866)
T KOG1062|consen 77 KLIASDNFLDKRIGYLAAMLLLDERQD-----LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLL 151 (866)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccchH-----HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHH
Confidence 466677777666666666666644322 00111122222233 122222233333333222121224444555566
Q ss_pred hccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHH
Q 000146 177 KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMK 256 (2052)
Q Consensus 177 ~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~ql 256 (2052)
+|.+|=|+.-++.|+..+++.--. ...-++....+++.+.+..|=-.+..++.++++-- ++.+ .. |+++-+.-.
T Consensus 152 ~~~~~~irKKA~Lca~r~irK~P~---l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~-~~~l-~~-fr~l~~~lV 225 (866)
T KOG1062|consen 152 QHRDPYIRKKAALCAVRFIRKVPD---LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKIS-PDAL-SY-FRDLVPSLV 225 (866)
T ss_pred hCCCHHHHHHHHHHHHHHHHcCch---HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcC-HHHH-HH-HHHHHHHHH
Confidence 677776777666666665533111 12345566667777777777777777777777553 3333 22 233333333
Q ss_pred HHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcc--
Q 000146 257 KELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK-- 334 (2052)
Q Consensus 257 keLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~-- 334 (2052)
+-|..... ..=|+ +.+ ...--|||=- +.|+ .+...+.
T Consensus 226 ~iLk~l~~----~~ysp-------------------------eyd---v~gi~dPFLQ---i~iL------rlLriLGq~ 264 (866)
T KOG1062|consen 226 KILKQLTN----SGYSP-------------------------EYD---VHGISDPFLQ---IRIL------RLLRILGQN 264 (866)
T ss_pred HHHHHHhc----CCCCC-------------------------ccC---ccCCCchHHH---HHHH------HHHHHhcCC
Confidence 33322110 00000 000 0011234310 1111 1111121
Q ss_pred cCChHHHHHHHHH-HHHHh-cCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHH------------Hhhhc-
Q 000146 335 ATKWSERKDAVAE-LTKLA-STKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLAR------------GLRTH- 398 (2052)
Q Consensus 335 s~kWkeR~eaL~~-L~~L~-~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~------------~L~~~- 398 (2052)
+.+.. +.+.. |.+++ ++.--.+..+.=|..++..++. ++|..++..|++||+.+-. +|..-
T Consensus 265 d~daS---d~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V 341 (866)
T KOG1062|consen 265 DADAS---DLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVV 341 (866)
T ss_pred CccHH---HHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhh
Confidence 22222 23333 33344 2222223445666777777777 8888899999999888653 22211
Q ss_pred -ch-hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000146 399 -FS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 399 -f~-~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 476 (2052)
++ ..+..-=..++++++|....++.-+.+.+-++... .++..++.+++..|..-.+..|..+..-+..+.+...+.
T Consensus 342 ~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~--~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~ 419 (866)
T KOG1062|consen 342 QQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE--SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPD 419 (866)
T ss_pred cCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc
Confidence 22 23445557889999999999999999999988864 678899999999998778899999999888888876553
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.24 Score=63.92 Aligned_cols=196 Identities=16% Similarity=0.197 Sum_probs=131.0
Q ss_pred cccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhCh
Q 000146 888 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGP 967 (2052)
Q Consensus 888 dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~ 967 (2052)
|+...+---++...++++-++|...+.-|..++. .+..|....|..|...|..|+.|--++|+.+|+-++..+-..-+.
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC
Confidence 3433344456778899999999999999998886 346777777888999999999999999999999998887632221
Q ss_pred hhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCC
Q 000146 968 AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP 1047 (2052)
Q Consensus 968 ~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~ 1047 (2052)
+=.+ +..++-.++ -.|..+.||.+|..++.. . ..-+|.|.+--.+- +...|.-+...+...+ ... ..
T Consensus 160 ee~~-v~n~l~~li--qnDpS~EVRRaaLsnI~v--d----nsTlp~IveRarDV--~~anRrlvY~r~lpki-d~r-~l 226 (892)
T KOG2025|consen 160 EECP-VVNLLKDLI--QNDPSDEVRRAALSNISV--D----NSTLPCIVERARDV--SGANRRLVYERCLPKI-DLR-SL 226 (892)
T ss_pred Cccc-HHHHHHHHH--hcCCcHHHHHHHHHhhcc--C----cccchhHHHHhhhh--hHHHHHHHHHHhhhhh-hhh-hh
Confidence 1111 122233333 269999999998665532 1 22345454444432 3556777776665554 221 22
Q ss_pred chhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000146 1048 DAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1097 (2052)
Q Consensus 1048 ~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~ 1097 (2052)
.....+.-+-.+|+||.-+||.+++.++..=+-.+-...+...+..|+.+
T Consensus 227 si~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvs 276 (892)
T KOG2025|consen 227 SIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVS 276 (892)
T ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccc
Confidence 33455555777999999999999999987644444444566677777743
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.034 Score=49.85 Aligned_cols=53 Identities=26% Similarity=0.290 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHH
Q 000146 379 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQA 431 (2052)
Q Consensus 379 ~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~a 431 (2052)
.|+..|+.+|+.++......+.+|...++|.|+..+.|....||.++..||..
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 58899999999999888888999999999999999999999999999888764
|
... |
| >KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.68 E-value=16 Score=48.41 Aligned_cols=369 Identities=14% Similarity=0.162 Sum_probs=190.1
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHH
Q 000146 644 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 723 (2052)
Q Consensus 644 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~ 723 (2052)
++.+.|.+.+-+.|.+||..+...+-.++.. .+++...++...-.++ .-+++.|=+ +-+.+++..
T Consensus 24 ~ik~~Lek~~~~~KIeamK~ii~~mlnGe~~---p~Llm~IiRfvlps~~---~elKKLly~---ywE~vPKt~------ 88 (948)
T KOG1058|consen 24 EIKEKLEKGDDEVKIEAMKKIIALMLNGEDL---PSLLMTIIRFVLPSRN---HELKKLLYY---YWELVPKTD------ 88 (948)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHcCCCc---hHHHHHHhheeeccCc---hHHHHHHHH---HHHHccccC------
Confidence 4667889999999999999988776654443 3333333322100111 112222211 112111111
Q ss_pred HHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 000146 724 CLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCK 803 (2052)
Q Consensus 724 il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~ 803 (2052)
+|.|+... ... |++.+-+- .+|+|-=+|-.++.+|+.+=+. --+.++++.++
T Consensus 89 ---------~dgkl~~E----MIL---------vcna~RkD-LQHPNEyiRG~TLRFLckLkE~-----ELlepl~p~Ir 140 (948)
T KOG1058|consen 89 ---------SDGKLLHE----MIL---------VCNAYRKD-LQHPNEYIRGSTLRFLCKLKEP-----ELLEPLMPSIR 140 (948)
T ss_pred ---------CCcccHHH----HHH---------HHHHHhhh-ccCchHhhcchhhhhhhhcCcH-----HHhhhhHHHHH
Confidence 11222211 111 22222233 3788888888888888876431 12457888899
Q ss_pred hhCCCCCcHHHHHHHHHHHHHHHHhhC------hh-hHhhhhh-ccHH-HHHHHHHHHhcCCCCCCCCCcc---cccccc
Q 000146 804 DTGLQSSAAATRNATIKLLGALHKFVG------PD-IKGFLAD-VKPA-LLSALDAEYEKNPFEGTVVPKK---TVRASE 871 (2052)
Q Consensus 804 ~~gL~~~n~~VR~aA~~ll~~Ly~~~G------~~-l~~~L~~-lkP~-ll~~Le~efeK~~~~~~p~p~r---~~r~~~ 871 (2052)
.+ |+|+++-||..|+-++.++|+... +. +..||.. ..|. ....+---|.- .|.| ..-+.
T Consensus 141 ac-leHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~-------D~ErAl~Yl~~~- 211 (948)
T KOG1058|consen 141 AC-LEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTT-------DPERALNYLLSN- 211 (948)
T ss_pred HH-HhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhc-------CHHHHHHHHHhh-
Confidence 86 999999999999999999998722 22 4456632 2221 11111111100 0000 00000
Q ss_pred ccCCCCCCCCCCCCcc-cccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCC----------CChhhHH----
Q 000146 872 STSSVSSGGSDGLPRE-DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQP----------AGTGELF---- 936 (2052)
Q Consensus 872 ~~~~~~~~~~d~lpr~-dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~----------~~~~eL~---- 936 (2052)
.|.+|.. +++...--+++...-..+-.+|..-++.+..++...+..+.. +. ...+
T Consensus 212 ---------idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~Aa 281 (948)
T KOG1058|consen 212 ---------IDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKAAA 281 (948)
T ss_pred ---------HhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHHHH
Confidence 0001100 011000012222222244445555566666666532221110 01 1122
Q ss_pred HHHHh---hhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHH
Q 000146 937 GGLRG---RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVP 1013 (2052)
Q Consensus 937 ~aL~~---rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~ 1013 (2052)
..+.. ...|.|.++. .+.-|..+. ..-+..+..++-.++..|.-..-.||.-+..-.-.++.+-....++.
T Consensus 282 ~~~i~l~~kesdnnvklI--vldrl~~l~----~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~ 355 (948)
T KOG1058|consen 282 STYIDLLVKESDNNVKLI--VLDRLSELK----ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQ 355 (948)
T ss_pred HHHHHHHHhccCcchhhh--hHHHHHHHh----hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHH
Confidence 12222 2255555443 334444444 33445677788899999999999999988877777777777777777
Q ss_pred HHHHHHhcC-----ccChhHHHHHHHHHHHHhccCCCCCchh-hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1014 YVTTALTDA-----KLGAEGRKDLFDWLSKQLTGLSGFPDAA-HLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1014 ~l~~~L~~~-----k~np~~R~~~l~~L~~~l~~~~~~~~~~-~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
.+..-+... ..|-.-|+.+++-+..+--+++ ++. ..+.-++..+.|.|+..-...-..+...+..++
T Consensus 356 ~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp---~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p 428 (948)
T KOG1058|consen 356 FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP---EVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFP 428 (948)
T ss_pred HHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCc
Confidence 666555311 0023458888888887655543 444 344558888999988544443333333333333
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.24 Score=67.34 Aligned_cols=194 Identities=14% Similarity=0.115 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCC---hhhHHHHHHhhh---ccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHH
Q 000146 907 KVRLESIEAVNKILEEANKRIQPAG---TGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 980 (2052)
Q Consensus 907 k~R~eale~L~~ll~~a~~~I~~~~---~~eL~~aL~~rL---~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~l 980 (2052)
-+|..|--.|.-+... +.++. +-.|-..|..-| .|+| .-....+.+...++..||..+.+ +-..+|.+
T Consensus 748 ~errgael~L~~l~~~----fg~sl~~klp~l~~~L~~~L~~~~~~~-d~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l 821 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKM----FGGSLAAKLPHLWDFLLKALSGLIDGN-DEFLSSFEVFNSLAPLMHSFLHP-LGSLLPRL 821 (1549)
T ss_pred HHhhhHHHHHHHHHHH----hhHHHHHhcchHHHHHHHhhhccCCCC-cchhhhHHHHHHHHHhhhhhhhh-hhhhhhHH
Confidence 3566666666655542 22222 122334444444 2333 15567778888888899999888 78889999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhcC---chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC---CCchhhhHH
Q 000146 981 LKCLGDNKKHMRECTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLK 1054 (2052)
Q Consensus 981 l~~l~D~k~~VR~aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~---~~~~~~ll~ 1054 (2052)
+..+......+|-++..|+..+..... +..+++.+...+.+- .-..|+.....+..++..... .+-..-+++
T Consensus 822 ~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~--~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~ 899 (1549)
T KOG0392|consen 822 FFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDL--DKFVRRQGADELIELLDAVLMVGLVPYNPLLVV 899 (1549)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch--hhHhhhhhHHHHHHHHHHhhcccccccceeehh
Confidence 999999999999999999999998754 333445555555431 122344433333334433322 223344677
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHcChhH-------HHHHhccCChHHHHHHHHHHhh
Q 000146 1055 PASIAMTDKSSDVRKAAEACIVEILRAGGQET-------IEKNLKDIQGPALALILERIKL 1108 (2052)
Q Consensus 1055 pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~-------~~~~l~~L~~~~~~~I~~~l~k 1108 (2052)
|+..++.|....||.+|.+++..+...++.+. |.+.+-..+...++.|+..++.
T Consensus 900 pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl~~ke~erkFLeqlldp 960 (1549)
T KOG0392|consen 900 PLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELLASKEEERKFLEQLLDP 960 (1549)
T ss_pred hhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHHHhHHHHHHHHHHhcCc
Confidence 89999999999999999999999999988654 3333433334445555555543
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.8 Score=55.32 Aligned_cols=145 Identities=15% Similarity=0.021 Sum_probs=91.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+.+...+++.+...|..+++.+...- .+-...|+..|+|.+..|+..|+.+++.+...
T Consensus 120 ~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~---------- 177 (410)
T TIGR02270 120 PWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR---------- 177 (410)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------
Confidence 35677788888889988886664311 22345677778899999999999999987632
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHH
Q 000146 975 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1054 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1054 (2052)
..+|.+...+.|.++.||.+|..++..+ |-..-++.+....... ++-.+..+..++... .....+.
T Consensus 178 ~a~~~L~~al~d~~~~VR~aA~~al~~l----G~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~--------~~~~a~~ 243 (410)
T TIGR02270 178 LSESTLRLYLRDSDPEVRFAALEAGLLA----GSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVA--------GGPDAQA 243 (410)
T ss_pred cchHHHHHHHcCCCHHHHHHHHHHHHHc----CCHhHHHHHHHHHhcc--CccHHHHHHHHHHhC--------CchhHHH
Confidence 3345566779999999999998888543 3344444444433322 222344444444321 1124555
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHH
Q 000146 1055 PASIAMTDKSSDVRKAAEACIVE 1077 (2052)
Q Consensus 1055 pl~~~L~D~~~dVRkaA~~~L~~ 1077 (2052)
.|...+.|.. ||..+..+++.
T Consensus 244 ~L~~ll~d~~--vr~~a~~AlG~ 264 (410)
T TIGR02270 244 WLRELLQAAA--TRREALRAVGL 264 (410)
T ss_pred HHHHHhcChh--hHHHHHHHHHH
Confidence 5666677754 77777766653
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.76 Score=49.67 Aligned_cols=98 Identities=15% Similarity=0.313 Sum_probs=77.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+.+.||. ++-.+-+++.. ++..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 14 l~~~dw~----~ileicD~In~-----~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (139)
T cd03567 14 NREEDWE----AIQAFCEQINK-----EPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLN 84 (139)
T ss_pred CCCCCHH----HHHHHHHHHHc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHH
Confidence 3466885 44455555532 2333478999999999999999999999999999999999997543 56788
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000146 979 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 979 ~ll~~l~D------~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
.+++.+.. ....|++-+...+..|....+
T Consensus 85 el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 85 ELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 88887753 567899999999999998875
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.064 Score=42.12 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1053 LKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1053 l~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
++.+.++++|++++||.+|..+|+.+.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 55688999999999999999999999876
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.17 E-value=21 Score=44.89 Aligned_cols=112 Identities=10% Similarity=0.079 Sum_probs=72.3
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh-----ccchHHHHHHHHHHHHHHHHHhChhh--HHhhh
Q 000146 902 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-----YDSNKNLVMATLITLGAVASAMGPAV--EKSSK 974 (2052)
Q Consensus 902 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL-----~DsN~~V~~~Al~~l~~la~alg~~~--~~~~~ 974 (2052)
...+.|+|..+++.|+.++.--.+-+++. +++++..=+..+ ...|.+|+-.||..++.+.+.---+| .+.+.
T Consensus 494 ~Ad~dkV~~navraLgnllQvlq~i~~~~-~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~ 572 (728)
T KOG4535|consen 494 SADKDKVKSNAVRALGNLLQFLQPIEKPT-FAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWAS 572 (728)
T ss_pred hhhhhhhhhHHHHHHhhHHHHHHHhhhcc-HHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchH
Confidence 44578999999999988876432233333 577765444433 55789999999999999987543333 25677
Q ss_pred HHHHHHHHHhCCCcH-HHHHHHHHHHHHHHHhcCchhhHHH
Q 000146 975 GVLSDILKCLGDNKK-HMRECTLTVLDAWLAAVHLDKMVPY 1014 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~-~VR~aa~~aL~~i~~~~~l~~ll~~ 1014 (2052)
.+++.++..+.|-+. -||--|..+|-......+...-++.
T Consensus 573 ~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~re~~~d~~~L 613 (728)
T KOG4535|consen 573 QAFNALTSLVTSCKNFKVRIRAAAALSVPGKREQYGDQYAL 613 (728)
T ss_pred HHHHHHHHHHHHhccceEeehhhhhhcCCCCcccchhHHhH
Confidence 888888887776444 3665555566554444443333343
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.37 Score=61.38 Aligned_cols=118 Identities=20% Similarity=0.118 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 000146 365 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 444 (2052)
Q Consensus 365 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll 444 (2052)
.+..|...+.|.+..|+..+...++.+ .-....+.|+..+++..+.|+.++..++...- .+-.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-------~~~~ 149 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-------HDPG 149 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-------cChH
Confidence 366777777777777777777776643 22345566777777777777766664444321 1223
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 000146 445 EDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 510 (2052)
Q Consensus 445 ~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 510 (2052)
+.+...|++.+|.||.+++..|..+=. ...+|.|..++.|.++.||.+|..+++.
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455566777788888887777765221 2344556677888888888888877743
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.79 E-value=24 Score=48.29 Aligned_cols=301 Identities=15% Similarity=0.101 Sum_probs=148.7
Q ss_pred HhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhh-----------hhhhh
Q 000146 99 TVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL-----------EAVDV 167 (2052)
Q Consensus 99 ~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~r~~tk~~A~~~~l~~~e~-----------~~~~~ 167 (2052)
...-||..+-=-.++.+..+-...|..+.+..-..+-.+++|.-+.-+.+...|..|++.++-. ++.|+
T Consensus 556 ~~~kSnv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DY 635 (1014)
T KOG4524|consen 556 GIKKSNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDY 635 (1014)
T ss_pred hhhccchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHH
Confidence 4455676666667777777777777766555545566688994446777888888888876644 23456
Q ss_pred HHHHHHHHhhc--cChhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhC-----
Q 000146 168 FLDVMEKAIKN--KVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG----- 239 (2052)
Q Consensus 168 v~e~Ll~~l~~--K~PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG----- 239 (2052)
++..|...+++ -.|.+. .++.=+++.=+...++ +++++..+.+.++..-.. | +..+++-+|.++-
T Consensus 636 lv~sla~~L~~~~~s~~~~----~Vl~vVl~~s~~~~i~~l~dvvq~i~~~lD~yH~~-~--~~~~~~ll~s~ik~~~~~ 708 (1014)
T KOG4524|consen 636 LVNSLALRLNTSGMSPRVP----DVLMVVLQYSDYGTIPNLKDVVQTIFKLLDYYHGY-S--CLQFFQLLHSIIKEMKKK 708 (1014)
T ss_pred HHHHHHHHhccCCCCchhH----HHHHHHhhcCCCCchhhHHHHHHHHHHHHHHhccc-c--hhHHHHHHHHHHHHHhhc
Confidence 66666544442 123221 1111112211112222 445555555554421111 1 3333333333221
Q ss_pred --Cc-hh----------hHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCC
Q 000146 240 --KD-PV----------KTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVP 306 (2052)
Q Consensus 240 --~~-~l----------~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (2052)
++ .+ ...+ .+.+|.|+.+++.-...+....-|+ .+ ... -+... ...++.++.++.++
T Consensus 709 ~~~~~il~~~~d~~~~~~~k~-l~e~p~~~~e~~n~~~d~~~~l~~~--~~---e~~---~~~~~-~~~~dnee~~e~~~ 778 (1014)
T KOG4524|consen 709 YINDEILGHIADQHISQSTKV-LNELPTQVKELINDENDLKDDLEPS--NF---EKD---FASKL-REPDDNEEPEEREE 778 (1014)
T ss_pred cccchhhHHHHHHHHHHHHHH-hhcchhhHHHhhhhHHHHHHhhhhH--HH---HHH---hhhhc-cCCCcccCcCCCCC
Confidence 00 00 0111 1236677776655444332111011 00 000 00000 00000000000000
Q ss_pred CCC---CCC-C---CC-CcccccCcCccchhhhhcccCChHHHHHHHHHHHH---Hh-cCCCCCCCChHHHHHHHHHHhc
Q 000146 307 PEI---DEY-E---LV-DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK---LA-STKRIAPGDFTEVCRTLKKLIT 374 (2052)
Q Consensus 307 ~~i---D~~-d---l~-~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~---L~-~~~ki~~~dy~~l~~~L~k~l~ 374 (2052)
+.. +.+ | .. +-++|+.++- ..-.-.+++++-..|.+||+-|.- ++ ..+...-...+...+.+..++.
T Consensus 779 e~edens~~~d~ep~~~~qv~iv~kIl-~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~ 857 (1014)
T KOG4524|consen 779 EVEDENSEYTDTEPILPDQVKIVLKIL-GRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLL 857 (1014)
T ss_pred CccccccCCCCCCCCCChHHHHHHHHH-HHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHh
Confidence 001 111 1 01 1233333332 222334788999999999998863 22 3333222234455567778888
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhcc-hhhhhhHHHHHHHHhccC
Q 000146 375 DVNIAVAVEAIQAIGNLARGLRTHF-SGSSRFLLPVLLEKLKEK 417 (2052)
Q Consensus 375 D~N~~V~~~A~~~l~~La~~L~~~f-~~~~~~llp~LL~klkdk 417 (2052)
+.|+-++.-|++||..|+..-|.-+ .++.+.++|.+=..+.+.
T Consensus 858 ~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~ 901 (1014)
T KOG4524|consen 858 CKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQDS 901 (1014)
T ss_pred cCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998766433 367778888776655553
|
|
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.77 E-value=1.4 Score=55.86 Aligned_cols=202 Identities=18% Similarity=0.194 Sum_probs=134.2
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
+-..++.+.++++-++|+..++-|.-+... -+.|....|.-|..-|..|+-|-.+.|+.+|+.++.++-.--+.. +.+
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~-v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne-en~ 169 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDV-VREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE-ENR 169 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh-HHH
Confidence 334567888999999999999988877753 355555556777888889999999999999999999887443433 333
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC--Cchh
Q 000146 973 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAA 1050 (2052)
Q Consensus 973 ~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~~ 1050 (2052)
...++-.++ -.|....||.+|. ++..+..-+ .|.+.+-..+- +..-|..+... +|+.++.. ....
T Consensus 170 ~~n~l~~~v--qnDPS~EVRr~al--lni~vdnsT----~p~IlERarDv--~~anRr~vY~r---~Lp~iGd~~~lsi~ 236 (885)
T COG5218 170 IVNLLKDIV--QNDPSDEVRRLAL--LNISVDNST----YPCILERARDV--SGANRRMVYER---CLPRIGDLKSLSID 236 (885)
T ss_pred HHHHHHHHH--hcCcHHHHHHHHH--HHeeeCCCc----chhHHHHhhhh--hHHHHHHHHHH---Hhhhhcchhhcccc
Confidence 333444433 3688899999963 333333333 34444433332 34456655544 44444331 1223
Q ss_pred hhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000146 1051 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1109 (2052)
Q Consensus 1051 ~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~ 1109 (2052)
..+.-+--+|.|+.-+||.++..++..-+..--.-.+...+..|+-+..+.+..+|++-
T Consensus 237 kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~ 295 (885)
T COG5218 237 KRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGV 295 (885)
T ss_pred ceehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHH
Confidence 33334556899999999999999988766665555566678888888777666776654
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.38 Score=65.64 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHhc---CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHH
Q 000146 339 SERKDAVAELTKLAS--TKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 413 (2052)
Q Consensus 339 keR~eaL~~L~~L~~--~~ki~~~dy~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 413 (2052)
-+|+.|...|..+.. ++.+ ...|..+-..|.+.+. |.|- -.....+....++..++..+.+ .-..+|.++..
T Consensus 748 ~errgael~L~~l~~~fg~sl-~~klp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~ 824 (1549)
T KOG0392|consen 748 FERRGAELFLKILSKMFGGSL-AAKLPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFF 824 (1549)
T ss_pred HHhhhHHHHHHHHHHHhhHHH-HHhcchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHh
Confidence 568887777776653 2111 1224444455555554 3441 2333455566666667777777 77889999999
Q ss_pred hccCcHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHh
Q 000146 414 LKEKKPTVAESLTQTLQAMHKAGC-LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 492 (2052)
Q Consensus 414 lkdkK~~V~~aa~~aL~ai~~~~~-~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 492 (2052)
..-.-..||-++..|+..+++..| .....+++.+..-++.-.--+|++...-+..++.......+.++..-++|.+..+
T Consensus 825 ~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 825 VRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcc
Confidence 999999999999999999998622 1133444555444554445566666555555555443344557778899999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhCCh
Q 000146 493 LNDGTPEVRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 493 l~Ds~~~VR~aA~~~l~~l~~~~Ge~ 518 (2052)
+.|....||++|.+++..+..+++..
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999998843
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=93.67 E-value=1.1 Score=54.69 Aligned_cols=167 Identities=20% Similarity=0.218 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCC----hhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHH
Q 000146 907 KVRLESIEAVNKILEEANKRIQPAG----TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK 982 (2052)
Q Consensus 907 k~R~eale~L~~ll~~a~~~I~~~~----~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~ 982 (2052)
-+...|+|-.+.|.+. |.+.. +.=....|...+.-+..+|+-.-++++....--+|+.+.+.++.++..++-
T Consensus 70 GVH~KaLevY~~IF~~----ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLp 145 (307)
T PF04118_consen 70 GVHQKALEVYEYIFER----IGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLP 145 (307)
T ss_pred HHHHHHHHHHHHHHHh----cCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 3566777777666642 33321 122345566667888889999999999999989999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC------C--------CCc
Q 000146 983 CLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS------G--------FPD 1048 (2052)
Q Consensus 983 ~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~------~--------~~~ 1048 (2052)
.+-|....+-+.+...++.+...+|-+-+...+...+.+ +|..|..++.|+.+.+.... . .++
T Consensus 146 GLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii~---sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 222 (307)
T PF04118_consen 146 GLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCIIT---SPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPD 222 (307)
T ss_pred ccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHhc---CcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCC
Confidence 999999999999999999999999988888888888864 48899999999999998866 1 123
Q ss_pred hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1049 AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1049 ~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
..-++..+..||+|.+-=|+..+-..| ..++.
T Consensus 223 ~~Llv~al~~~L~D~~iLVqR~~LDlL---l~~~P 254 (307)
T PF04118_consen 223 PGLLVRALCACLEDENILVQRGFLDLL---LSHFP 254 (307)
T ss_pred ccHHHHHHHHHhCCchHHHHHHHHHHH---HHhCC
Confidence 334566688999999998887765444 55555
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.68 Score=50.43 Aligned_cols=99 Identities=20% Similarity=0.343 Sum_probs=78.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+...||.. +-.|.+.+.. .+..-.+.+.+|++||...|.+|+..||.++..+++.+|..|... .+.|+.
T Consensus 13 l~~~dw~~----il~icD~I~~-----~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~ 83 (144)
T cd03568 13 LTSENWGL----ILDVCDKVKS-----DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQ 83 (144)
T ss_pred CCCcCHHH----HHHHHHHHhc-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHH
Confidence 34568853 3334444431 133347899999999999999999999999999999999998754 456888
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000146 979 DILKCLGD-NKKHMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 979 ~ll~~l~D-~k~~VR~aa~~aL~~i~~~~~l 1008 (2052)
.+.+.+.+ ....|++-+...+..|.....-
T Consensus 84 eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 84 ELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 88888887 7888999999999999988763
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II | Back alignment and domain information |
|---|
Probab=93.43 E-value=20 Score=43.19 Aligned_cols=235 Identities=12% Similarity=0.161 Sum_probs=152.6
Q ss_pred HHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCC
Q 000146 802 CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGS 881 (2052)
Q Consensus 802 l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~ 881 (2052)
+... |.+.++.+|..|+.+|..+-..+.+.. +...+...
T Consensus 4 Lg~~-Ltsed~~~R~ka~~~Ls~vL~~lp~~~------L~~~ev~~---------------------------------- 42 (262)
T PF14500_consen 4 LGEY-LTSEDPIIRAKALELLSEVLERLPPDF------LSRQEVQV---------------------------------- 42 (262)
T ss_pred hhhh-hCCCCHHHHHHHHHHHHHHHHhCCHhh------ccHHHHHH----------------------------------
Confidence 3444 889999999999999877765444321 11111111
Q ss_pred CCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh--ccchHHHHHHHHHHHH
Q 000146 882 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL--YDSNKNLVMATLITLG 959 (2052)
Q Consensus 882 d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL--~DsN~~V~~~Al~~l~ 959 (2052)
|..=+.+++ .+|..=..++..+..++. .+.+.+....+++..+.+.. ..--...+....+++.
T Consensus 43 -----------L~~F~~~rl--~D~~~~~~~l~gl~~L~~--~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~ 107 (262)
T PF14500_consen 43 -----------LLDFFCSRL--DDHACVQPALKGLLALVK--MKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLD 107 (262)
T ss_pred -----------HHHHHHHHh--ccHhhHHHHHHHHHHHHh--CcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHH
Confidence 122223334 245555566777777774 24455544456666665433 2234557788888888
Q ss_pred HHHHHhChhhHHhhhHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-------c-CccCh--hH
Q 000146 960 AVASAMGPAVEKSSKGVLSDILKCLG-DNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-------D-AKLGA--EG 1028 (2052)
Q Consensus 960 ~la~alg~~~~~~~~~llp~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~-------~-~k~np--~~ 1028 (2052)
.+...-...+......++..+++.+. ++.|.----+.+-+..+.....+..+.+.+.+.+. . +..+| -.
T Consensus 108 ~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT 187 (262)
T PF14500_consen 108 SLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGIT 187 (262)
T ss_pred HHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCC
Confidence 88877666666667778888888774 56665555555666677777777666776666654 1 11112 25
Q ss_pred HHHHHHHHHHHhccCCCCCchhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCC
Q 000146 1029 RKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQ 1095 (2052)
Q Consensus 1029 R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~ 1095 (2052)
|.++-.-|..++... +...+.+-| ++..|....+.|+.-+-+.|......+|.+.+.++...+=
T Consensus 188 ~edLk~~L~~cl~s~---~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw 252 (262)
T PF14500_consen 188 REDLKRALRNCLSST---PLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIW 252 (262)
T ss_pred HHHHHHHHHHHhcCc---HhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 666667777777643 345555555 8889999999999999999999999999999998876553
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.36 E-value=39 Score=46.16 Aligned_cols=167 Identities=18% Similarity=0.111 Sum_probs=90.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHH-HHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFG-GLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 979 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~-aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ 979 (2052)
+.+++-+.|.+|+..+-..+..+ +++..++. .+|... --|..+....---+...++.-+ .-+...+..
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G------~dmssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P----~~~lLavNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG------EDMSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP----ELALLAVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH----HHHHHHHHH
Confidence 67778888999998876665532 22333332 333333 2333333322222222222111 345556677
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhh
Q 000146 980 ILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA 1059 (2052)
Q Consensus 980 ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~ 1059 (2052)
+.+-++|.++.+|..|..++..+-..-=++.+++.+...+.++ ++.+|.++.-.+..++.--+.--.-...+..+...
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l 174 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLDKDLYHELGLIDILKEL 174 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHH
Confidence 8888888888888888777765432111233333444445555 57788887777776654221100001122334445
Q ss_pred cCCCCHHHHHHHHHHHHHHHH
Q 000146 1060 MTDKSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1060 L~D~~~dVRkaA~~~L~~l~~ 1080 (2052)
+.|.++.|-.+|..+|..+..
T Consensus 175 ~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 175 VADSDPIVIANALASLAEIDP 195 (757)
T ss_pred hhCCCchHHHHHHHHHHHhch
Confidence 578888888877777766553
|
|
| >KOG4524 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.15 E-value=32 Score=47.15 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=76.0
Q ss_pred cCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC--CHHHHHH--------
Q 000146 376 VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL--NLVDVVE-------- 445 (2052)
Q Consensus 376 ~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~--~l~~ll~-------- 445 (2052)
+|+--+..++..|+.+|..+|..|.+..-..+=++++++.+..+.|++.+..|+.+|+.+ |. +++-++.
T Consensus 560 Snv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a-~~y~s~~~lI~en~DYlv~ 638 (1014)
T KOG4524|consen 560 SNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADA-LNYGSPPHLIRENVDYLVN 638 (1014)
T ss_pred cchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-cCCCChHHHHHhhhHHHHH
Confidence 444444555788999999999999999999999999999999999999999999999987 43 3544443
Q ss_pred HHHHHhhc--CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhc
Q 000146 446 DVKTSVKN--KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN 494 (2052)
Q Consensus 446 ~l~~~L~~--Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~ 494 (2052)
.|...+++ -.|++ -..+..++...+.. ..++++.++..+.+.++
T Consensus 639 sla~~L~~~~~s~~~----~~Vl~vVl~~s~~~-~i~~l~dvvq~i~~~lD 684 (1014)
T KOG4524|consen 639 SLALRLNTSGMSPRV----PDVLMVVLQYSDYG-TIPNLKDVVQTIFKLLD 684 (1014)
T ss_pred HHHHHhccCCCCchh----HHHHHHHhhcCCCC-chhhHHHHHHHHHHHHH
Confidence 33222221 12332 23444444444333 23556666666666664
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.46 Score=63.21 Aligned_cols=146 Identities=17% Similarity=0.142 Sum_probs=106.3
Q ss_pred hHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHhh---h-cchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh
Q 000146 362 FTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLR---T-HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 435 (2052)
Q Consensus 362 y~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~---~-~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~ 435 (2052)
|++++++|...+. +.-.+ ++.+..|+..++ + -.-|....++|-||+.+.-....|+-+...++..+..-
T Consensus 865 F~~ivP~l~~~~~t~~~~~K-----~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~ 939 (1030)
T KOG1967|consen 865 FCDIVPILVSKFETAPGSQK-----HNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTE 939 (1030)
T ss_pred HHhhHHHHHHHhccCCccch-----hHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHh
Confidence 5666777766665 11111 223333333333 2 23577889999999999999999998888988887764
Q ss_pred c----CCCHHHHHHHHHHH-hhcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHH
Q 000146 436 G----CLNLVDVVEDVKTS-VKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 508 (2052)
Q Consensus 436 ~----~~~l~~ll~~l~~~-L~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 508 (2052)
. ..+++-+++.++.- ..++| -.||..+++.|..+.+..|...+..+-+.++.++.++|+|...-||+.|..+=
T Consensus 940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 1 23456777777653 23554 48999999999988777888878888899999999999999999999998876
Q ss_pred HHHH
Q 000146 509 AAIA 512 (2052)
Q Consensus 509 ~~l~ 512 (2052)
....
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 5443
|
|
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.89 E-value=30 Score=45.58 Aligned_cols=184 Identities=20% Similarity=0.216 Sum_probs=120.3
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCC
Q 000146 806 GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 885 (2052)
Q Consensus 806 gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lp 885 (2052)
||+.+|.+||..|..++..+|-..|++...- ..=..|++.|+
T Consensus 182 ~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e------~mD~i~~kQf~-------------------------------- 223 (1005)
T KOG1949|consen 182 GLKARNSEVRSNAALLFVEAFPIRDPDLHAE------EMDSIIQKQFE-------------------------------- 223 (1005)
T ss_pred hhccCchhhhhhHHHHHHHhccCCCCCccHH------HHHHHHHHHHH--------------------------------
Confidence 5899999999999999999998888775311 11112222222
Q ss_pred cccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh-ccchHHHHHHHHHHHHHHHHH
Q 000146 886 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASA 964 (2052)
Q Consensus 886 r~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~a 964 (2052)
.+++.++|.--.+|-+|++.+.++...-=--|.++...+++.-+..-+ .|+-..|+..+.+.|.+|+-
T Consensus 224 ----------~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~- 292 (1005)
T KOG1949|consen 224 ----------ELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD- 292 (1005)
T ss_pred ----------HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc-
Confidence 345556676677899999999888864222344555556655555544 67888899999998888763
Q ss_pred hChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc--CchhhH--HHHHHHHhcCccChhHHHHHHHHHHHHh
Q 000146 965 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV--HLDKMV--PYVTTALTDAKLGAEGRKDLFDWLSKQL 1040 (2052)
Q Consensus 965 lg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~--~l~~ll--~~l~~~L~~~k~np~~R~~~l~~L~~~l 1040 (2052)
.+..-+.++.++|.+=-.+.|+...||-|+...|-.+-.+- ..-.++ +.+..-|...+. +..|.-+.-.+..+|
T Consensus 293 -np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d~~-~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 293 -NPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETDSR-PVSRRLVSLIFNSFL 370 (1005)
T ss_pred -CccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhcccc-HHHHHHHHHHHHhhc
Confidence 34445678889998888999999999999988887665432 122222 244555554432 444444333333343
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.3 Score=54.62 Aligned_cols=126 Identities=17% Similarity=0.259 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHhhhhhhh--hhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--hhhHHHHHHHHhhccChhhHH
Q 000146 111 ALDALIAYLKAADADAGR--YAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--VDVFLDVMEKAIKNKVAKAVV 185 (2052)
Q Consensus 111 gl~al~~~l~~~~~~~~~--~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~--~~~v~e~Ll~~l~~K~PKvv~ 185 (2052)
.|.++..++++....... ....++..||..++. ..+.+|+.|++|+-.|+=++. ....+..+...+..-.+.++.
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 455666667766533322 345788889988887 578999999999999887753 345555566777556788999
Q ss_pred HHHHHHHHHHHHhCCCCcC----------hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHH
Q 000146 186 PAIDVMFQALSEFGAKIIP----------PKRILKMLPELFDHQDQNVRASSKGLTLELCR 236 (2052)
Q Consensus 186 ~~l~~L~~~l~~FG~~~i~----------~k~il~~l~~ll~~~dk~VR~~a~~l~vely~ 236 (2052)
.+++++.+++-.||...+. ...+++.+.+.+.+.++.||..|.+-+.-|+-
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999996653 24688999999999999999999999888763
|
|
| >KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.56 E-value=28 Score=46.07 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=116.9
Q ss_pred ccChhhHHHHHHHHHHHHHHhCCCC--cC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHH
Q 000146 178 NKVAKAVVPAIDVMFQALSEFGAKI--IP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDT 254 (2052)
Q Consensus 178 ~K~PKvv~~~l~~L~~~l~~FG~~~--i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~ 254 (2052)
.|++-+..-.+..+..++..|-..- .. +.+++.++.+..+..|++||-....++.-+.-..+. +...+++.|...
T Consensus 53 kKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~e--idd~vfn~l~e~ 130 (892)
T KOG2025|consen 53 KKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAE--IDDDVFNKLNEK 130 (892)
T ss_pred ccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccc--cCHHHHHHHHHH
Confidence 4666677777777777777665421 11 567889999999999999998887776665554431 334444443333
Q ss_pred HHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcc
Q 000146 255 MKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVK 334 (2052)
Q Consensus 255 qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~ 334 (2052)
++ .++.
T Consensus 131 l~--------------------------------------------------------------------------~Rl~ 136 (892)
T KOG2025|consen 131 LL--------------------------------------------------------------------------IRLK 136 (892)
T ss_pred HH--------------------------------------------------------------------------HHHh
Confidence 22 2222
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHH
Q 000146 335 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEK 413 (2052)
Q Consensus 335 s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~k 413 (2052)
+..-..|.+|+..|..+-..++ .+--+++..|+..+. |++.-|++.|+-+|..= ...+|-++++
T Consensus 137 Drep~VRiqAv~aLsrlQ~d~~---dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vd------------nsTlp~IveR 201 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQGDPK---DEECPVVNLLKDLIQNDPSDEVRRAALSNISVD------------NSTLPCIVER 201 (892)
T ss_pred ccCchHHHHHHHHHHHHhcCCC---CCcccHHHHHHHHHhcCCcHHHHHHHHHhhccC------------cccchhHHHH
Confidence 2223347788887777653322 223457778888887 99999999998877531 2357888999
Q ss_pred hccCcHHHHHHHHH-HHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 000146 414 LKEKKPTVAESLTQ-TLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWV 466 (2052)
Q Consensus 414 lkdkK~~V~~aa~~-aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L 466 (2052)
.+|-+..+|.-+-+ +|-.+ ..-..+.+.-+.-+.-|+.+..-.||..+...+
T Consensus 202 arDV~~anRrlvY~r~lpki-d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~i 254 (892)
T KOG2025|consen 202 ARDVSGANRRLVYERCLPKI-DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAI 254 (892)
T ss_pred hhhhhHHHHHHHHHHhhhhh-hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 99887766654322 12222 110123333333334455555555555444433
|
|
| >PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length | Back alignment and domain information |
|---|
Probab=92.36 E-value=24 Score=44.93 Aligned_cols=193 Identities=16% Similarity=0.155 Sum_probs=114.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCc-ChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHH
Q 000146 182 KAVVPAIDVMFQALSEFGAKII-PPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELE 260 (2052)
Q Consensus 182 Kvv~~~l~~L~~~l~~FG~~~i-~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe 260 (2052)
-++.+.+.++..++.+|-..-+ .....++.+...+-|..+.||..|..+..++-..+|+. ..+. +.+.
T Consensus 149 si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~---~~~s--------~~~~ 217 (372)
T PF12231_consen 149 SIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPN---KELS--------KSVL 217 (372)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChh---HHHH--------HHHH
Confidence 4788999999999999866332 34457777777777999999999999999998888753 1111 1122
Q ss_pred HHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhccc-CChH
Q 000146 261 VELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKA-TKWS 339 (2052)
Q Consensus 261 ~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s-~kWk 339 (2052)
..++..-. +.++. + .+. +.+.+++.+ +..+
T Consensus 218 ~~~~~~~~---~~~~~---------------------------------~------------~~~-~~L~~mi~~~~~~~ 248 (372)
T PF12231_consen 218 EDLQRSLE---NGKLI---------------------------------Q------------LYC-ERLKEMIKSKDEYK 248 (372)
T ss_pred HHhccccc---cccHH---------------------------------H------------HHH-HHHHHHHhCcCCcc
Confidence 11111000 00000 0 000 011112222 1111
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcc---hhhhhhHHHHHHHHhc
Q 000146 340 ERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHF---SGSSRFLLPVLLEKLK 415 (2052)
Q Consensus 340 eR~eaL~~L~~L~~~~ki~~~-dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f---~~~~~~llp~LL~klk 415 (2052)
.=...--.+..++..+.+... .+.+.+....+++++.++.+...|..|-..+...+..+- .+..+.+..++.-.++
T Consensus 249 ~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~ 328 (372)
T PF12231_consen 249 LAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLR 328 (372)
T ss_pred hHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhC
Confidence 111111223334444444443 457888889999999999999999999999988665442 3557777777777776
Q ss_pred cCc-H----HHHHHHHHHHHHHHH
Q 000146 416 EKK-P----TVAESLTQTLQAMHK 434 (2052)
Q Consensus 416 dkK-~----~V~~aa~~aL~ai~~ 434 (2052)
.++ . .++.++...+..++-
T Consensus 329 ~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 329 REKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred ccccccccHHHHHHHHHHHhchHH
Confidence 554 2 556666666665553
|
Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces. |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.2 Score=48.01 Aligned_cols=100 Identities=21% Similarity=0.341 Sum_probs=77.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh-h-HHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS-K-GVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~-~-~llp 978 (2052)
+.+.||. ++-+|.+++.. . +..-.+.+.+|+++|...|++++..||.++..+++.+|..|...+ . .++-
T Consensus 13 ~~~~D~~----~il~icd~I~~--~---~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~ 83 (133)
T cd03561 13 LEEPDWA----LNLELCDLINL--K---PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLL 83 (133)
T ss_pred cCCccHH----HHHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHH
Confidence 3556886 44455555542 1 333589999999999999999999999999999999999986543 3 5666
Q ss_pred HHHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000146 979 DILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 979 ~ll~~l~D---~k~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
.+++.+.. ....|+.-+.+.+..|....+.+
T Consensus 84 ~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 84 ELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 77777765 46789999999999999988754
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.30 E-value=3.7 Score=55.40 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=115.4
Q ss_pred cccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000146 333 VKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 411 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 411 (2052)
+.+++=++|.+|++.+.+.. .+ .|...++..+.|-+.--|+-+-...---+...++.=. ..+...++.+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G-----~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P----~~~lLavNti~ 98 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLG-----EDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKP----ELALLAVNTIQ 98 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH----HHHHHHHHHHH
Confidence 67777889999999876643 32 2467777777766664455555544444444433211 45778899999
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh-HHHHHH
Q 000146 412 EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD-YVPICM 490 (2052)
Q Consensus 412 ~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~-l~p~l~ 490 (2052)
+-+.|+++-+|-.|..++..+=.. .=++.+++.|...+.|+++.||..++..+..+++-.. .. +... .+-.+.
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l~~~--el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~-~l---~~~~g~~~~l~ 172 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLLRVK--ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK-DL---YHELGLIDILK 172 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH-hh---hhcccHHHHHH
Confidence 999999999998777766644221 1145566777788899999999999999999886432 11 1233 566677
Q ss_pred HhhcCCChHHHHHHHHHHHHHHH
Q 000146 491 ECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 491 k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
.++.|++|.|-.+|..++..+..
T Consensus 173 ~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 173 ELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHhhCCCchHHHHHHHHHHHhch
Confidence 78889999998888887766653
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.25 E-value=20 Score=51.57 Aligned_cols=236 Identities=16% Similarity=0.135 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchh------hhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHH
Q 000146 702 VIEVINYLAATATKFPKKCVVLCLLGISERVADIK------TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS 775 (2052)
Q Consensus 702 ~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K------~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~ 775 (2052)
+++++..++..... .-..+|..|+.+++.+. -+..|..++..++.+..+. +.+.+...+...+. . ..
T Consensus 164 ~~~i~~~li~e~d~----v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~-i~~f~~~~~~~~~s-~-~~ 236 (1266)
T KOG1525|consen 164 MLDIAIMLITEEDT----VQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDT-IANFLNSCLTEYKS-R-QS 236 (1266)
T ss_pred HHHHHHHHHHhhcc----chHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchh-HHHHHHHHHhhccc-c-cc
Confidence 77777777766322 22345566666666542 2455555666655554432 33333333322221 1 11
Q ss_pred HHHHHHHHHHHHhCC-CCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhc
Q 000146 776 EGILWMVSAVEDFGV-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 854 (2052)
Q Consensus 776 e~L~~L~~~i~~fG~-~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK 854 (2052)
..-....++|-+... ..--+-.+++++..- |.+.+-.+|-.|..++|.|+...+..+. +
T Consensus 237 ~~~~~~he~i~~L~~~~p~ll~~vip~l~~e-L~se~~~~Rl~a~~lvg~~~~~~~~~l~------------------~- 296 (1266)
T KOG1525|consen 237 SLKIKYHELILELWRIAPQLLLAVIPQLEFE-LLSEQEEVRLKAVKLVGRMFSDKDSQLS------------------E- 296 (1266)
T ss_pred chhhHHHHHHHHHHHhhHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcchhhhc------------------c-
Confidence 111122222222111 000133577777766 8899999999999999999865432210 0
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhh
Q 000146 855 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 934 (2052)
Q Consensus 855 ~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~e 934 (2052)
. ...+-..|+..+.|..-.+|.+.++....++.. ++.+... ..
T Consensus 297 ----------------------------~------~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-~~~~~~~--~~ 339 (1266)
T KOG1525|consen 297 ----------------------------T------YDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-NPSIAKA--ST 339 (1266)
T ss_pred ----------------------------c------chHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-CchhhhH--HH
Confidence 0 011345788889999999999999999888863 2222211 34
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh
Q 000146 935 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA 1005 (2052)
Q Consensus 935 L~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~ 1005 (2052)
+..+|+.+..|.+..++...+.....++ .-.+ .+...++..+.+++.|++..||..|+..|..+.++
T Consensus 340 ~~~~l~~~~~D~~~rir~~v~i~~~~v~---~~~l-~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 340 ILLALRERDLDEDVRVRTQVVIVACDVM---KFKL-VYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHhhcCChhhhheeeEEEEEeehh---Hhhh-hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 5566666777777766654433222211 1111 33333777888999999999999999999999986
|
|
| >KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.00 E-value=66 Score=44.48 Aligned_cols=194 Identities=15% Similarity=0.103 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHh-cC-CCCCCCChHHHHHHHHHHhc----CcCHHHHHHHHHHHHHHHHHhhhc--chhh-hhhHHHHHH
Q 000146 341 RKDAVAELTKLA-ST-KRIAPGDFTEVCRTLKKLIT----DVNIAVAVEAIQAIGNLARGLRTH--FSGS-SRFLLPVLL 411 (2052)
Q Consensus 341 R~eaL~~L~~L~-~~-~ki~~~dy~~l~~~L~k~l~----D~N~~V~~~A~~~l~~La~~L~~~--f~~~-~~~llp~LL 411 (2052)
+.+|+.-+..++ +. +...++-.+-++..|.+.-. ..|.+-...|+..++.++..|.++ |+.. -..+++.++
T Consensus 389 ~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf 468 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF 468 (1010)
T ss_pred cHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence 467777777666 33 22223333334444443322 456777889999999999988754 4332 335667777
Q ss_pred HHhccCcHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChh--HHHHhhhhH
Q 000146 412 EKLKEKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKA--AVLKVHKDY 485 (2052)
Q Consensus 412 ~klkdkK~~V~~aa~~aL~ai~~~---~~~~l~~ll~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~--~l~~~l~~l 485 (2052)
--|..+--..|.-+...+..+..- ....+...++-...+|. ++.-.||.+++..|..++.+.... .+.++++.+
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~ 548 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI 548 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence 788888888998888888888742 01235667777778888 556689999999999999877543 366888999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHH
Q 000146 486 VPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEM 538 (2052)
Q Consensus 486 ~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~ 538 (2052)
|..+.++.++..-+. -..++..+...++++ +.||-..|-..-...+-.+
T Consensus 549 mq~lL~L~ne~End~---Lt~vme~iV~~fseE-lsPfA~eL~q~La~~F~k~ 597 (1010)
T KOG1991|consen 549 MQELLKLSNEVENDD---LTNVMEKIVCKFSEE-LSPFAVELCQNLAETFLKV 597 (1010)
T ss_pred HHHHHHHHHhcchhH---HHHHHHHHHHHHHHh-hchhHHHHHHHHHHHHHHH
Confidence 999999998887765 345666667777765 6777666644333333333
|
|
| >KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.97 E-value=51 Score=43.74 Aligned_cols=260 Identities=14% Similarity=0.075 Sum_probs=142.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHH
Q 000146 769 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 848 (2052)
Q Consensus 769 KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~L 848 (2052)
-.+-|+..+...|-.+.+.+. .-++....++.+..+ |++.+-.|-.++..++..|-+...+..+..+ |...+.|
T Consensus 160 ~~~~vkqkaALclL~L~r~sp-Dl~~~~~W~~riv~L-L~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~----~~avs~L 233 (938)
T KOG1077|consen 160 SMDYVKQKAALCLLRLFRKSP-DLVNPGEWAQRIVHL-LDDQHMGVVTAATSLIEALVKKNPESYKTCL----PLAVSRL 233 (938)
T ss_pred chHHHHHHHHHHHHHHHhcCc-cccChhhHHHHHHHH-hCccccceeeehHHHHHHHHHcCCHHHhhhH----HHHHHHH
Confidence 334466666666666665432 234555667777777 8888889999999999999888877655433 2222222
Q ss_pred HHHHhcCCC-------CCCCCC---ccccccccccCCCCCCCCCCCCcccccccccHHHHhhc----CCCChHHHHHHHH
Q 000146 849 DAEYEKNPF-------EGTVVP---KKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL----ESPDWKVRLESIE 914 (2052)
Q Consensus 849 e~efeK~~~-------~~~p~p---~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l----~d~~Wk~R~eale 914 (2052)
..-.-.... -.-|.| ++.+|-=+--+ ..+|.-.|.-+. .+...++.+. .+++-+.+..-=.
T Consensus 234 ~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p----~~~D~~~r~~l~-evl~~iLnk~~~~~~~k~vq~~na~na 308 (938)
T KOG1077|consen 234 SRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP----TPEDPSTRARLN-EVLERILNKAQEPPKSKKVQHSNAKNA 308 (938)
T ss_pred HHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC----CCCCchHHHHHH-HHHHHHHhccccCccccchHhhhhHHH
Confidence 222111100 000111 00000000000 000000000000 0111222222 2233333332222
Q ss_pred HHHHHHHhccccC--CCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhC-CCcHHH
Q 000146 915 AVNKILEEANKRI--QPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLG-DNKKHM 991 (2052)
Q Consensus 915 ~L~~ll~~a~~~I--~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~-D~k~~V 991 (2052)
-|-+.|.-+ -++ .++.+...+..|...|.+-..+++-.|++.+..|+.. +.. -..++.-.-.++..|+ +..-.|
T Consensus 309 VLFeaI~l~-~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s-~davK~h~d~Ii~sLkterDvSi 385 (938)
T KOG1077|consen 309 VLFEAISLA-IHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EFS-IDAVKKHQDTIINSLKTERDVSI 385 (938)
T ss_pred HHHHHHHHH-HHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cch-HHHHHHHHHHHHHHhccccchHH
Confidence 222222211 111 1233455667777777888888888888888888866 222 2334445777888898 899999
Q ss_pred HHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC
Q 000146 992 RECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1044 (2052)
Q Consensus 992 R~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~ 1044 (2052)
|+-|.+-|-+|...-....++..++..|.+. .+..|.++.--.+-.-+++.
T Consensus 386 rrravDLLY~mcD~~Nak~IV~elLqYL~tA--d~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 386 RRRAVDLLYAMCDVSNAKQIVAELLQYLETA--DYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhc
Confidence 9999999999998888888999999999876 57889887765554444443
|
|
| >KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.75 Score=61.33 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=93.4
Q ss_pred ccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccc-cCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhh
Q 000146 891 GKFTPTLVKSLESPDWKVRLESIEAVNKILEEANK-RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 969 (2052)
Q Consensus 891 ~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~-~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~ 969 (2052)
..|-|.+.+.+....--+|-.-++.|..++..-.+ .+.|. +..|++.|.+.|+=+...|+..+++++..+....+.-.
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~-~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQ-FPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccc-hhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 33556677777655555666677788777864322 23344 58899999999988888899999999999999999999
Q ss_pred HHhhhHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHhcCch
Q 000146 970 EKSSKGVLSDILKCLGDNK---KHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 970 ~~~~~~llp~ll~~l~D~k---~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
..|+..++|.++..-.|++ ..||..|.+||+++.+.++..
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~ 987 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK 987 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc
Confidence 9999999999999888877 689999999999988866533
|
|
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.79 Score=49.76 Aligned_cols=105 Identities=30% Similarity=0.515 Sum_probs=75.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+.+.+|. ++-.|-+++.. . +..-.+.+.+|++||...|.+++..||.++..+++.+|..|... .+.|+-
T Consensus 18 ~~~~Dw~----~~l~icD~i~~---~--~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~ 88 (140)
T PF00790_consen 18 LPSPDWS----LILEICDLINS---S--PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLD 88 (140)
T ss_dssp SSS--HH----HHHHHHHHHHT---S--TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCCCHH----HHHHHHHHHHc---C--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHH
Confidence 4556885 33345555542 1 33348999999999999999999999999999999999998754 345777
Q ss_pred HHHHHhCCCcH--H--HHHHHHHHHHHHHHhcCchhhHHH
Q 000146 979 DILKCLGDNKK--H--MRECTLTVLDAWLAAVHLDKMVPY 1014 (2052)
Q Consensus 979 ~ll~~l~D~k~--~--VR~aa~~aL~~i~~~~~l~~ll~~ 1014 (2052)
.+...+.++.. . |++.+...|..|....+-+.-++.
T Consensus 89 ~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~ 128 (140)
T PF00790_consen 89 ELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSL 128 (140)
T ss_dssp HHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHH
T ss_pred HHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchH
Confidence 77776654333 2 899999999999998854433333
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=91.86 E-value=1.5 Score=47.72 Aligned_cols=99 Identities=18% Similarity=0.335 Sum_probs=75.8
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHHH
Q 000146 902 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLSD 979 (2052)
Q Consensus 902 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp~ 979 (2052)
...+|.. +-.|-+++.. . +..-.+.+.+|++||...|.+++..||.++..+++.+|..|... .+.|+..
T Consensus 18 ~~~dw~~----ileicD~In~--~---~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~ 88 (142)
T cd03569 18 GEPDLAS----ILEICDMIRS--K---DVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDE 88 (142)
T ss_pred CccCHHH----HHHHHHHHhC--C---CCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHH
Confidence 4568864 3344444432 1 22247899999999999999999999999999999999998754 3557777
Q ss_pred HHHHhC-CCcHHHHHHHHHHHHHHHHhcCch
Q 000146 980 ILKCLG-DNKKHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 980 ll~~l~-D~k~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
+...+. ...+.|++-+...+..|......+
T Consensus 89 l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 89 LKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 776665 466789999999999999987644
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.82 E-value=11 Score=50.69 Aligned_cols=237 Identities=17% Similarity=0.225 Sum_probs=143.4
Q ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCC-CCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhh
Q 000146 758 FERLYKIMKDHKNPKVLSEGILWMVSAVEDFGV-SHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGF 836 (2052)
Q Consensus 758 l~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~-~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~ 836 (2052)
+++.+..+ .++-+-++..++..|..+++.-.. ..+....+++.+... |.|.|+-|==.|++.++.|...+.+.+
T Consensus 729 ~qeai~sl-~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lcevy~e~i--- 803 (982)
T KOG4653|consen 729 LQEAISSL-HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCEVYPEDI--- 803 (982)
T ss_pred HHHHHHHh-cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHHhcchhh---
Confidence 44444443 567777899999999999985432 234556788888887 999999999999996666655444333
Q ss_pred hhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHH
Q 000146 837 LADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAV 916 (2052)
Q Consensus 837 L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L 916 (2052)
+..+-++++....... + | .|...=|.+
T Consensus 804 --------l~dL~e~Y~s~k~k~~--~------------------d-------------------------~~lkVGEai 830 (982)
T KOG4653|consen 804 --------LPDLSEEYLSEKKKLQ--T------------------D-------------------------YRLKVGEAI 830 (982)
T ss_pred --------HHHHHHHHHhcccCCC--c------------------c-------------------------ceehHHHHH
Confidence 2222233322111000 0 0 010111333
Q ss_pred HHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh-CCCcHHHHHHH
Q 000146 917 NKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECT 995 (2052)
Q Consensus 917 ~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l-~D~k~~VR~aa 995 (2052)
.+++..- ..+....++-|...+...+.|+....+..++..+|.++....-....++..++..++... .|....||+||
T Consensus 831 ~k~~qa~-Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaA 909 (982)
T KOG4653|consen 831 LKVAQAL-GELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDGSVLVRRAA 909 (982)
T ss_pred HHHHHHh-ccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCCchhhHHHH
Confidence 3333321 111111235566666666788988899999999999999887655556777777776644 58999999999
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000146 996 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1075 (2052)
Q Consensus 996 ~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L 1075 (2052)
...+......+| ..++|.+...+.+. -.++..+. -.|++..+|..|+.|+
T Consensus 910 v~li~~lL~~tg-~dlLpilr~~l~Dl------~~tl~~~v-----------------------r~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 910 VHLLAELLNGTG-EDLLPILRLLLIDL------DETLLSYV-----------------------RQHDDDGLKLHAQLCL 959 (982)
T ss_pred HHHHHHHHhccc-hhhHHHHHHHHHHH------HHHHHHHH-----------------------hcCchhHHHHHHHHHH
Confidence 999988888777 33444333333221 01111111 1445667888888888
Q ss_pred HHHHHHcC
Q 000146 1076 VEILRAGG 1083 (2052)
Q Consensus 1076 ~~l~~~~G 1083 (2052)
..+-..+.
T Consensus 960 eei~a~l~ 967 (982)
T KOG4653|consen 960 EEIQAALE 967 (982)
T ss_pred HHHHHHHH
Confidence 77655544
|
|
| >smart00288 VHS Domain present in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.3 Score=47.58 Aligned_cols=99 Identities=20% Similarity=0.390 Sum_probs=74.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+.+.+|.. +-.+-+++.. . +..-.+.+.+|++||...|++++..||.++..+++.+|..|...+ +.|+.
T Consensus 13 l~~~dw~~----~l~icD~i~~---~--~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~ 83 (133)
T smart00288 13 LLEEDWEL----ILEICDLINS---T--PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLN 83 (133)
T ss_pred CCCcCHHH----HHHHHHHHhC---C--CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHH
Confidence 44668863 3344444431 1 233478999999999999999999999999999999999986543 44777
Q ss_pred HHHHHhCCCcH--HHHHHHHHHHHHHHHhcCc
Q 000146 979 DILKCLGDNKK--HMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 979 ~ll~~l~D~k~--~VR~aa~~aL~~i~~~~~l 1008 (2052)
.+...+.++.. .|++.+...+..|.....-
T Consensus 84 ~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~ 115 (133)
T smart00288 84 ELVKLIKPKYPLPLVKKRILELIQEWADAFKN 115 (133)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 77766665432 3999999999999998753
|
Unpublished observations. Domain of unknown function. |
| >PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter | Back alignment and domain information |
|---|
Probab=91.19 E-value=3 Score=46.98 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=85.3
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCC----HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC--hhH
Q 000146 405 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLN----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS--KAA 477 (2052)
Q Consensus 405 ~llp~LL~klkdkK~~V~~aa~~aL~ai~~~-~~~~----l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~--~~~ 477 (2052)
.++|.+++-+.|++..-+--|.+.+..++.. +... +++++..|..+|+++++.|...++..|..++...+ ...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 5678888888888876666666666666665 1111 45666667789999999999999999999866543 234
Q ss_pred HHHhhhhHHHHHHHhh--c---------CCChHHHHHHHHHHHHHHHHhCChhH
Q 000146 478 VLKVHKDYVPICMECL--N---------DGTPEVRDAAFSVLAAIAKSVGMRPL 520 (2052)
Q Consensus 478 l~~~l~~l~p~l~k~l--~---------Ds~~~VR~aA~~~l~~l~~~~Ge~~~ 520 (2052)
+.+|++.++|.+-... + .....+++--.++|..+-+.-|++++
T Consensus 118 LvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 118 LVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 6788999999887222 2 35578888889999888888887643
|
The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism. |
| >KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.08 E-value=7.2 Score=47.92 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=117.8
Q ss_pred CCChHHHHHHHHHHHHHHHh---ccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH-HHH
Q 000146 903 SPDWKVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG-VLS 978 (2052)
Q Consensus 903 d~~Wk~R~eale~L~~ll~~---a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~-llp 978 (2052)
+.+-..|..|++.|+.+++. |+..+. +|-+...|. .+++++..|+..|..+|+..+..-.+--....+. .++
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~---~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~ 169 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLIS---LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALS 169 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhh---ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHH
Confidence 34567889999999999974 333333 234455555 8999999999999999999887655443333332 567
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcC--chhhHH-----HHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCc-h
Q 000146 979 DILKCLG-DNKKHMRECTLTVLDAWLAAVH--LDKMVP-----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-A 1049 (2052)
Q Consensus 979 ~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~--l~~ll~-----~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~-~ 1049 (2052)
.++..|. |..-.+|..|.-|+..++++.. .+.++. .+.++|+++..+...+.-++..+..++.......+ .
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 7777775 5555788999999999998863 455554 57788887534566777778778877776654322 2
Q ss_pred hhhHHH--HHhhcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1050 AHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1050 ~~ll~p--l~~~L~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
..+..+ +.....--+.+++.++..++-.+......
T Consensus 250 ~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred HHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 222222 22233344567788877777666555443
|
|
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=91.01 E-value=2.1 Score=44.79 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHH-----H
Q 000146 911 ESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILK-----C 983 (2052)
Q Consensus 911 eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~--llp~ll~-----~ 983 (2052)
..+..|..++.. .+..+.+++.+|.+||.+.|..++..||.++..+++..|..|..++.. ++-.++. .
T Consensus 19 ~~i~~i~d~~~~-----~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~ 93 (115)
T cd00197 19 PLIMEICDLINE-----TNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKL 93 (115)
T ss_pred HHHHHHHHHHHC-----CCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccc
Confidence 445566655532 134468999999999999999999999999999999999999876533 2333322 1
Q ss_pred h-CCCcHHHHHHHHHHHHHHH
Q 000146 984 L-GDNKKHMRECTLTVLDAWL 1003 (2052)
Q Consensus 984 l-~D~k~~VR~aa~~aL~~i~ 1003 (2052)
. .+....||+.+.+.+..|.
T Consensus 94 ~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 94 LGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred ccCCCChHHHHHHHHHHHHHh
Confidence 1 2456789999999998885
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=90.90 E-value=1.5 Score=49.46 Aligned_cols=134 Identities=21% Similarity=0.235 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHh-ChhhHHhhhHHHHHH-----------H-HHhCCCcHHHHHHHHHHHHHHHHhcC--------
Q 000146 949 NLVMATLITLGAVASAM-GPAVEKSSKGVLSDI-----------L-KCLGDNKKHMRECTLTVLDAWLAAVH-------- 1007 (2052)
Q Consensus 949 ~V~~~Al~~l~~la~al-g~~~~~~~~~llp~l-----------l-~~l~D~k~~VR~aa~~aL~~i~~~~~-------- 1007 (2052)
+|++.|+.+++.+++.. ++.|..|-..++|.- + -.+.|..+-+|.+|..++.++.+...
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 47899999999999994 566788888888865 2 35579999999999999999987541
Q ss_pred --------------chhhH----HHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC---Cc-hhhhHHHHHhhcCCCCH
Q 000146 1008 --------------LDKMV----PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PD-AAHLLKPASIAMTDKSS 1065 (2052)
Q Consensus 1008 --------------l~~ll----~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~---~~-~~~ll~pl~~~L~D~~~ 1065 (2052)
+..++ ..+..+|..++ ++..-..+++.++..+...+-. .+ +..++..+...+.+++.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 11111 12445555543 4556678888888777776542 23 34555567777889999
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 000146 1066 DVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1066 dVRkaA~~~L~~l~~~~G 1083 (2052)
+||-++.-|++.+....+
T Consensus 160 ~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQP 177 (182)
T ss_pred cHHHHHHHHHHHHHcCCC
Confidence 999999999998876543
|
|
| >KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] | Back alignment and domain information |
|---|
Probab=90.04 E-value=93 Score=42.71 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCcc
Q 000146 948 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN-KKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKL 1024 (2052)
Q Consensus 948 ~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~-k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k~ 1024 (2052)
..|+..++-+++.||-+-+ +.++.++|.+++-|.-+ ...||.-..-++..++.+.+ .+..+|.|...|.++
T Consensus 945 ~~vra~~vvTlakmcLah~----~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp-- 1018 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHD----RLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDP-- 1018 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCc--
Confidence 3577888888898887766 44666788888777543 34688888888888887764 588999999999987
Q ss_pred ChhHHHHHHHHHHHHhccCCCCCch-hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1025 GAEGRKDLFDWLSKQLTGLSGFPDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1025 np~~R~~~l~~L~~~l~~~~~~~~~-~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
.+.+|..++..|+++++.---. + -.+..-++..|-|.+++||.-|..++..+...-.+
T Consensus 1019 ~~iVRrqt~ilL~rLLq~~~vK--w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQFGIVK--WNGELFIRFMLALLDANEDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhhhh--cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhhcCc
Confidence 5899999999999988642110 1 13444466778899999999999999988766443
|
|
| >KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.00 E-value=7.8 Score=51.80 Aligned_cols=176 Identities=18% Similarity=0.199 Sum_probs=118.3
Q ss_pred ChHHHHHHHHHHHHHh--cCCC-CCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhh-hHHHHHH
Q 000146 337 KWSERKDAVAELTKLA--STKR-IAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSR-FLLPVLL 411 (2052)
Q Consensus 337 kWkeR~eaL~~L~~L~--~~~k-i~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~-~llp~LL 411 (2052)
+=..-.+||.+|..++ .+.. +..-....+++.|.++++ +.|.-+...||+|+.+|+..+-....-.+. ..+|.++
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~ 260 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLL 260 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHH
Confidence 5555677888887754 2222 222245789999999999 889999999999999999999766543222 4789999
Q ss_pred HHhccCc-HHHHHHHHHHHHHHHHhcCCCHHHHHHH-----HHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000146 412 EKLKEKK-PTVAESLTQTLQAMHKAGCLNLVDVVED-----VKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 485 (2052)
Q Consensus 412 ~klkdkK-~~V~~aa~~aL~ai~~~~~~~l~~ll~~-----l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 485 (2052)
+|+-.=- -.|.|.+.+||..|-.. +..+|+.. .+..+.-=.-.+...++.....|.....+..+ .++-+.
T Consensus 261 ~kL~~IeyiDvAEQ~LqALE~iSR~---H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f-~~v~ea 336 (1051)
T KOG0168|consen 261 EKLLTIEYIDVAEQSLQALEKISRR---HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEF-HFVMEA 336 (1051)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHhh---ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-hHHHHH
Confidence 9987643 67888888888887763 33333321 12222211223445566666666665554444 344567
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 486 VPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 486 ~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
+|.|..+|.-.+..+-+..+-|+..+..-+-
T Consensus 337 lPlL~~lLs~~D~k~ies~~ic~~ri~d~f~ 367 (1051)
T KOG0168|consen 337 LPLLTPLLSYQDKKPIESVCICLTRIADGFQ 367 (1051)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence 8999999988888877888888877665543
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=89.74 E-value=14 Score=44.49 Aligned_cols=302 Identities=16% Similarity=0.145 Sum_probs=162.6
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHH-hccccCCCCChhhHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILE-EANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~-~a~~~I~~~~~~eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
|.+...+-+.+-..-..|.-++++++. +.++-|++-.-.-+++-|...+ .--+..+.-.|.=.|..++.+....-+-.
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV 153 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV 153 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence 456666777788888899999999997 3456676643344555555555 33345556667667777776543321111
Q ss_pred h-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-Cch------hhHHHHHHHHhcCccC-hhHHHHHHHHHHHHhccC
Q 000146 973 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-HLD------KMVPYVTTALTDAKLG-AEGRKDLFDWLSKQLTGL 1043 (2052)
Q Consensus 973 ~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~-~l~------~ll~~l~~~L~~~k~n-p~~R~~~l~~L~~~l~~~ 1043 (2052)
+ ..-+|-+++.|.+....||+.+.=+|+.++.-. ++. ..++.++..|.+.... ..+| -..|...-+..-
T Consensus 154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlR--n~TWtLSNlcRG 231 (526)
T COG5064 154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLR--NATWTLSNLCRG 231 (526)
T ss_pred EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHH--HhHHHHHHhhCC
Confidence 1 235789999999999999999999998776322 111 1223344444432211 2233 345654444332
Q ss_pred C-CCCch---hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCC
Q 000146 1044 S-GFPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPT 1119 (2052)
Q Consensus 1044 ~-~~~~~---~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~ 1119 (2052)
. +.+++ ...++.+.+.+.-++++|---|.-++..+.-.- .+.+... |+......+.+.+-...
T Consensus 232 knP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~-~E~i~av---ld~g~~~RLvElLs~~s--------- 298 (526)
T COG5064 232 KNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGP-NEKIQAV---LDVGIPGRLVELLSHES--------- 298 (526)
T ss_pred CCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCc-HHHHHHH---HhcCCcHHHHHHhcCcc---------
Confidence 2 23443 445555778888888888776665554332111 1111111 11111112233321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhc---------cccCCCchHHHhhhhhcccc
Q 000146 1120 SKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQAL---------LNVKDSNKEDRERMVVRRFK 1190 (2052)
Q Consensus 1120 ~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~k~~R~~~~~~k~~ 1190 (2052)
..+++|.-|+.. -+.+ | .+.+++.+ +.+..+.|+ ++|+.. =|.
T Consensus 299 ------------a~iqtPalR~vG--NIVT-G-----------~D~QTqviI~~G~L~a~~~lLs~~ke-~irKEa-CWT 350 (526)
T COG5064 299 ------------AKIQTPALRSVG--NIVT-G-----------SDDQTQVIINCGALKAFRSLLSSPKE-NIRKEA-CWT 350 (526)
T ss_pred ------------ccccCHHHHhhc--Ceee-c-----------CccceehheecccHHHHHHHhcChhh-hhhhhh-hee
Confidence 011111111110 0010 0 01122221 122233333 443322 376
Q ss_pred ccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCc
Q 000146 1191 FEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPS 1239 (2052)
Q Consensus 1191 f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~ 1239 (2052)
...-+.-..|+.+.-|..-+-+-|+..|-+.||+.+.+|.=.+.....+
T Consensus 351 iSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 351 ISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 6655555667777778888888899999999999999988777766544
|
|
| >cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein | Back alignment and domain information |
|---|
Probab=89.58 E-value=2.5 Score=45.93 Aligned_cols=100 Identities=25% Similarity=0.425 Sum_probs=73.7
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 977 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~-DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~ll 977 (2052)
+...||..=. .|-+.+.. . ...-.+.+.+|++||. ..|.+|+..||.++..+++.+|..|...+ +.|+
T Consensus 14 l~~~dw~~il----eicD~In~--~---~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl 84 (141)
T cd03565 14 LQSEDWGLNM----EICDIINE--T---EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFI 84 (141)
T ss_pred CCCcCHHHHH----HHHHHHhC--C---CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhh
Confidence 4556886433 34344431 2 2334789999999997 46999999999999999999999987543 4577
Q ss_pred HH-HHHHhCC---CcHHHHHHHHHHHHHHHHhcCch
Q 000146 978 SD-ILKCLGD---NKKHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 978 p~-ll~~l~D---~k~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
.. +++.+.+ ....|++-+...+..|.....-+
T Consensus 85 ~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~ 120 (141)
T cd03565 85 KDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGS 120 (141)
T ss_pred hHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 66 6666653 34589999999999999887644
|
The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways. |
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=89.49 E-value=3.7 Score=45.72 Aligned_cols=146 Identities=12% Similarity=0.169 Sum_probs=91.2
Q ss_pred CChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHH--hc
Q 000146 360 GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK--AG 436 (2052)
Q Consensus 360 ~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~--~~ 436 (2052)
.+|.+|+..|.+.++ +.+..++.++++++|.|+ ..+||....+..-.. +.. ..+....+.+.... ..
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~~~~~---~~~--~~~~~~~~~~~~l~~~~~ 75 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQKSLD---SKS--SENSNDESTDISLPMMGI 75 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhcccccCC---ccc--cccccccchhhHHhhccC
Confidence 469999999999999 877999999999999885 344553321111111 100 00111111111111 10
Q ss_pred CCCHHHHH-----HHHHHHhhcCC-hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 000146 437 CLNLVDVV-----EDVKTSVKNKV-PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 510 (2052)
Q Consensus 437 ~~~l~~ll-----~~l~~~L~~Kn-p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 510 (2052)
..+.++.. ..+...|+++. ..-...++..+..+++....+. .++++.++|.+...+....+..|+.-+.-|+.
T Consensus 76 ~~~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 76 SPSSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 12333333 33444455544 3445567777777787655554 57889999999999999999999999888888
Q ss_pred HHHHhC
Q 000146 511 IAKSVG 516 (2052)
Q Consensus 511 l~~~~G 516 (2052)
+..+++
T Consensus 155 lv~ivk 160 (160)
T PF11865_consen 155 LVSIVK 160 (160)
T ss_pred HHHHhC
Confidence 887654
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=88.88 E-value=76 Score=40.42 Aligned_cols=169 Identities=19% Similarity=0.124 Sum_probs=104.0
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHH
Q 000146 904 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKC 983 (2052)
Q Consensus 904 ~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~ 983 (2052)
++--+|.+|+.-++.+++-. +.... .-.-++.++.....+.+-..+..+++++.+++-.- +.+--+... +..+++.
T Consensus 80 ~~~~ER~QALkliR~~l~~~-~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~-P~lv~~~gG-~~~L~~~ 155 (371)
T PF14664_consen 80 KNDVEREQALKLIRAFLEIK-KGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN-PELVAECGG-IRVLLRA 155 (371)
T ss_pred CChHHHHHHHHHHHHHHHhc-CCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC-HHHHHHcCC-HHHHHHH
Confidence 45678999999999999852 11111 11568888888888888899999999999988542 222222222 3566677
Q ss_pred hCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcC-----ccChh-HHH-HHHHHHHHHhccCCCC----
Q 000146 984 LGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDA-----KLGAE-GRK-DLFDWLSKQLTGLSGF---- 1046 (2052)
Q Consensus 984 l~D~k~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~-----k~np~-~R~-~~l~~L~~~l~~~~~~---- 1046 (2052)
+.|..-.+.+++..++-.+..+-. .+.-++.+...+.+. +.+.+ .|. ..-..+...+..|+.-
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeee
Confidence 777544577777777777765432 112233333333221 11221 243 3344466677888762
Q ss_pred CchhhhHHHHHhhcCCCCHHHHHHHHHHHH
Q 000146 1047 PDAAHLLKPASIAMTDKSSDVRKAAEACIV 1076 (2052)
Q Consensus 1047 ~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~ 1076 (2052)
.+...-++.++.+|.-++.++|+..-..+-
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 122256777888898899999988766554
|
|
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.84 E-value=1.3 Score=58.05 Aligned_cols=183 Identities=19% Similarity=0.245 Sum_probs=128.8
Q ss_pred cccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh-hhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhH
Q 000146 892 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 970 (2052)
Q Consensus 892 ~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~-~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~ 970 (2052)
.+.|-+++.++..+-.+|.--|+.+.+.+. .+.+..+ ..+++-+..-+.|.|..++..++.++..|+..+++.
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~----~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYID----HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhh----hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--
Confidence 355678888999999999998888888875 3443322 568888999999999999999999999999999987
Q ss_pred HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc---hhhHH-HHHHHHhcCccChhHHHHHHHHHHHHhccCCCC
Q 000146 971 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL---DKMVP-YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1046 (2052)
Q Consensus 971 ~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l---~~ll~-~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~ 1046 (2052)
..-..++..+-..-.|....+|.-..-||..+..+... ..++. .+..+++++- .|.-..+++.+.+ ..++...
T Consensus 404 ~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~vL~~aftralkdpf-~paR~a~v~~l~a--t~~~~~~ 480 (690)
T KOG1243|consen 404 NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPF-VPARKAGVLALAA--TQEYFDQ 480 (690)
T ss_pred hhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhccccchhhhhhhcCCC-CCchhhhhHHHhh--cccccch
Confidence 33455666666666699999999999999988877532 22222 4555666652 2433344544443 2233222
Q ss_pred CchhhhHHH-HHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1047 PDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1047 ~~~~~ll~p-l~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
.++..-+.| +...+-|.+..||..|..++..+...+-
T Consensus 481 ~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 481 SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhhhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 333333344 5556689999999999988876665544
|
|
| >cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) | Back alignment and domain information |
|---|
Probab=88.70 E-value=6.4 Score=42.99 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=67.7
Q ss_pred CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHH-HhhhhHHHHHHHhhcC-CChHHHHHHHHHHHHHHHH
Q 000146 437 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVL-KVHKDYVPICMECLND-GTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 437 ~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~-~~l~~l~p~l~k~l~D-s~~~VR~aA~~~l~~l~~~ 514 (2052)
..+..+.+..|..-++|+||.+-..++..|..|+++|+...-. -.-+.++..+.+++.+ .++.||+...+.+......
T Consensus 32 ~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 3556777777878889999999999999999999999865322 1236788889999998 9999999999999999988
Q ss_pred hCCh
Q 000146 515 VGMR 518 (2052)
Q Consensus 515 ~Ge~ 518 (2052)
+...
T Consensus 112 f~~~ 115 (144)
T cd03568 112 FKND 115 (144)
T ss_pred hCCC
Confidence 8754
|
Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries. |
| >KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.64 E-value=2.1 Score=55.00 Aligned_cols=106 Identities=25% Similarity=0.426 Sum_probs=81.2
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHH
Q 000146 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGV 976 (2052)
Q Consensus 899 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~l 976 (2052)
..+.+.||-.=.+ |.++|.. .... ..|.+.+|++||+..|..|+..||.+|..+++.+|..|... -+.|
T Consensus 12 ~~l~~pDWa~Nle----IcD~IN~--~~~~---~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLE----ICDLINS--TEGG---PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHH----HHHHHhc--CccC---cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3467789975443 4444431 1111 36999999999999999999999999999999999999744 3568
Q ss_pred HHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcCc-hhhHH
Q 000146 977 LSDILKCLGDN--KKHMRECTLTVLDAWLAAVHL-DKMVP 1013 (2052)
Q Consensus 977 lp~ll~~l~D~--k~~VR~aa~~aL~~i~~~~~l-~~ll~ 1013 (2052)
+.-++...+.+ ...||+-+...|++|.+.++- +.-++
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~~~~~~~ 122 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQAFCGPDGYLP 122 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHHccCCCCcch
Confidence 89999888876 557999999999999998753 44444
|
|
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.25 E-value=5.7 Score=56.87 Aligned_cols=200 Identities=12% Similarity=0.086 Sum_probs=136.3
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 975 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ 975 (2052)
.+++.+.-++-.+|..|+.++.+++...+....-..++.....+.+.+.|-+..|+.++-.++..+.+.+++.+.+|++.
T Consensus 45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~ 124 (1312)
T KOG0803|consen 45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS 124 (1312)
T ss_pred HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 56678888899999999999999997532222222346667777888899999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHh---------cCchhhHHHHHHHHhcC---cc--------------ChhHH
Q 000146 976 VLSDILKCLGDNKKHMRECTLTVLDAWLAA---------VHLDKMVPYVTTALTDA---KL--------------GAEGR 1029 (2052)
Q Consensus 976 llp~ll~~l~D~k~~VR~aa~~aL~~i~~~---------~~l~~ll~~l~~~L~~~---k~--------------np~~R 1029 (2052)
++|..+-..-|..-.|..+|-+.+...... |+ ..+++.+.+.+... .. -+++-
T Consensus 125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~-~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi 203 (1312)
T KOG0803|consen 125 LIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCD-PEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVI 203 (1312)
T ss_pred hhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhh-HHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHH
Confidence 999999999999999998888877654431 11 12223333222110 00 12233
Q ss_pred HHHHHHHHHHhccCCCCCc-------hhhhHHH--HHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCCh
Q 000146 1030 KDLFDWLSKQLTGLSGFPD-------AAHLLKP--ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQG 1096 (2052)
Q Consensus 1030 ~~~l~~L~~~l~~~~~~~~-------~~~ll~p--l~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~ 1096 (2052)
...+..+...+.......+ .+.+... +.+.+.++++.||.+..+++-.+...+..-.|....+.+++
T Consensus 204 ~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~ 279 (1312)
T KOG0803|consen 204 SSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKP 279 (1312)
T ss_pred HHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhH
Confidence 4455555555543332111 2223322 66678999999999999999888877665434444444443
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.02 E-value=97 Score=40.27 Aligned_cols=117 Identities=12% Similarity=0.095 Sum_probs=66.9
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000146 401 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN---LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 477 (2052)
Q Consensus 401 ~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~---l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~ 477 (2052)
++..++.|-|-..+++|-.-|.-.+..++.++... ..+ +++.+..+-..|+..+...|-.++..|.++....|...
T Consensus 260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~-nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEE-NVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 34556667777777777776665555556665543 123 33444445556666667777778888877665554331
Q ss_pred HHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhh
Q 000146 478 VLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEK 526 (2052)
Q Consensus 478 l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~ 526 (2052)
..+-+.+-.+++|.+..+ +.-|+.++.+.--++.+..++..
T Consensus 339 -----~vcN~evEsLIsd~Nr~I---styAITtLLKTGt~e~idrLv~~ 379 (898)
T COG5240 339 -----SVCNKEVESLISDENRTI---STYAITTLLKTGTEETIDRLVNL 379 (898)
T ss_pred -----eecChhHHHHhhcccccc---hHHHHHHHHHcCchhhHHHHHHH
Confidence 223344556667777655 45555555555445555554443
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=87.81 E-value=56 Score=44.83 Aligned_cols=135 Identities=12% Similarity=0.056 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHhhh--HHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcC------chhhHHHHHH
Q 000146 948 KNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVH------LDKMVPYVTT 1017 (2052)
Q Consensus 948 ~~V~~~Al~~l~~la~alg~~~~~~~~--~llp~ll~~l~D~k--~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~ 1017 (2052)
......++.+++.+.. .+.++..++. .++|-+.+.|.... ..+.-.+.-.+++++..-. -..+++.+..
T Consensus 505 ee~~vE~LGiLaNL~~-~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~ 583 (708)
T PF05804_consen 505 EEFVVECLGILANLTI-PDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIE 583 (708)
T ss_pred HHHHHHHHHHHHhccc-CCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHH
Confidence 3333334433333332 1445666664 47777777775432 2344444455555543211 1245667777
Q ss_pred HHhcCccChhHHHHHHHHHHHHhccCCCCCch---hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1018 ALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA---AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1018 ~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~---~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
.|..+..+-+.=..++-.+...+.+-.....+ .++..-++..+.|+|++||+.+..||..++.+=.
T Consensus 584 LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 584 LLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 77654322333333333333344332211111 3344558889999999999999999998876543
|
|
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=87.61 E-value=3 Score=43.99 Aligned_cols=98 Identities=16% Similarity=0.185 Sum_probs=69.1
Q ss_pred CCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHH
Q 000146 902 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDIL 981 (2052)
Q Consensus 902 ~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll 981 (2052)
+|.+|-.=--.+++|.++... .++.+.+++..|.+||+|.+..|..-+|++|..++......|...++.-...|-
T Consensus 11 sdd~~p~pgy~~~Eia~~t~~-----s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik 85 (122)
T cd03572 11 SDDDEPTPGYLYEEIAKLTRK-----SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIR 85 (122)
T ss_pred cCCCCCCchHHHHHHHHHHHc-----CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHH
Confidence 344444333445566655542 223468999999999999999999999999999999988888877666554433
Q ss_pred HHh---C--------CCcHHHHHHHHHHHHHHHH
Q 000146 982 KCL---G--------DNKKHMRECTLTVLDAWLA 1004 (2052)
Q Consensus 982 ~~l---~--------D~k~~VR~aa~~aL~~i~~ 1004 (2052)
.+. + +....||.+|.+++..+..
T Consensus 86 ~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 86 ECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 322 2 2455799999998888764
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
| >KOG1243 consensus Protein kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.90 E-value=1.6 Score=57.34 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=79.4
Q ss_pred hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 401 GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC--LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 401 ~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~--~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
.|-..++|.|+..|+-....||--+..=++.++.+.+ .-.+.|++.+..++.+.|+.+|..|+..+..++....+..+
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 4778899999999999999999888888888877611 12467899999999999999999999999988876655433
Q ss_pred HHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 479 LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 479 ~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
. .+++..+.+.-.|.++.+|....-|++.+.
T Consensus 406 n---~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 406 N---GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred c---HHHHHHHHhhCccccCcccccceeeecccc
Confidence 2 334444444445555555555555554444
|
|
| >KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.80 E-value=29 Score=50.08 Aligned_cols=260 Identities=10% Similarity=0.065 Sum_probs=144.5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCC-CCCCCCCC
Q 000146 807 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS-SGGSDGLP 885 (2052)
Q Consensus 807 L~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~-~~~~d~lp 885 (2052)
|.|+|.+||--..-|+.++.+...|.. +|-...-..+.+.+...|........|--.|..--=....-.- --..+...
T Consensus 59 L~h~d~dvrllvacCvseilRi~aPea-Py~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d 137 (1266)
T KOG1525|consen 59 LKHKDKDVRLLVACCVSEILRIYAPEA-PYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLED 137 (1266)
T ss_pred hcCCCcChhHHHHHHHHHHHHHhCCCC-CCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccc
Confidence 899999999999999999999887752 1111111123344445555443322111111000000000000 00001111
Q ss_pred cccccccccHHHHhhcCC-------CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHH
Q 000146 886 REDISGKFTPTLVKSLES-------PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL 958 (2052)
Q Consensus 886 r~dIs~~i~~~ll~~l~d-------~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l 958 (2052)
..| +..+++..+-| .+|-. -++-+..++.+. ..+ -.+++..|..-|...+.+....|..+-
T Consensus 138 ~~e----~~~~~f~~f~d~~~~~~~~~v~~---~~~i~~~li~e~-d~v----~~e~L~~ll~~lv~~~~~~~~~a~~la 205 (1266)
T KOG1525|consen 138 CQE----LVHELFRTFFDLARKGHPKKVFN---MLDIAIMLITEE-DTV----QSELLDVLLENLVKPGRDTIKEADKLA 205 (1266)
T ss_pred hHH----HHHHHHHHHHHHHhccccHHHHH---HHHHHHHHHHhh-ccc----hHHHHHHHHHHhccCCCCccHHHHHHH
Confidence 111 22233332211 13433 333333344332 111 256777777767666677777777777
Q ss_pred HHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCccChhHHHHHHHHH
Q 000146 959 GAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWL 1036 (2052)
Q Consensus 959 ~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k~np~~R~~~l~~L 1036 (2052)
..++..++...++....++..-+..-.-....++....+-+-.+....+ +-.++|.|..-|.+. +-+.|..+.+.+
T Consensus 206 ~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se--~~~~Rl~a~~lv 283 (1266)
T KOG1525|consen 206 SDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSE--QEEVRLKAVKLV 283 (1266)
T ss_pred HHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHH
Confidence 7777777777776666666554444333444555555555555554433 456777777777655 478999999999
Q ss_pred HHHhccCCC--CCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1037 SKQLTGLSG--FPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1037 ~~~l~~~~~--~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
.+.|..... .....++....+..+.|.+.+||-+..++...+...
T Consensus 284 g~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 284 GRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred HHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence 988865433 223566777788889999999999998877655433
|
|
| >KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.41 E-value=1.1e+02 Score=41.47 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHhhhchh---hhHHHHHHHHHHHhhhChhHH---HHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHh---
Q 000146 719 KCVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMK-DHKNPKVLSEGILWMVSAVEDF--- 788 (2052)
Q Consensus 719 ~~~~~il~~LveKlgd~K---~r~~a~e~L~~l~E~~~~~~V---l~~L~~~l~-~~KnpKv~~e~L~~L~~~i~~f--- 788 (2052)
..++..++.|++++...- -|..|.-.|.+++..+..... +..++..+. +-.+|.....+|..+.-++..=
T Consensus 18 ~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 18 QSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred ccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 356667777777776643 255666666666665443211 111111111 1234444444444444433210
Q ss_pred ------------CCC----CCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhh
Q 000146 789 ------------GVS----HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLAD 839 (2052)
Q Consensus 789 ------------G~~----~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~ 839 (2052)
|.- -+.-++.|..+... +++-|=.||..|++++..+-.+-|..++..+-.
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~-~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~ 163 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQS-LEEFDFHVRLYAIQLLSALLSCRPTELQDALLV 163 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHH-HHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 000 01123455666666 788899999999999999999999887776633
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=86.34 E-value=9.6 Score=46.95 Aligned_cols=111 Identities=16% Similarity=0.091 Sum_probs=84.2
Q ss_pred hhHHHHHH-HHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000146 404 RFLLPVLL-EKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 482 (2052)
Q Consensus 404 ~~llp~LL-~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 482 (2052)
..++..|+ ..+....+.||+.+..||.-++-.....-.+.+.-+...++.....+|..+++.+..++..++...+....
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 36666655 45566778999999999998876411223455666667776668899999999999999888755443322
Q ss_pred --------hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 483 --------KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 483 --------~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
..+...+.+.+.+.++++|..|.+++..+.-.
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 46888999999999999999999999988743
|
|
| >KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.98 E-value=12 Score=45.50 Aligned_cols=187 Identities=13% Similarity=0.140 Sum_probs=114.1
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
+.+.|...+.+.+-|++..|--.|+.+.... ..+.+-.-..-++.|.+.|.|+-..++....-||..++..-+...--.
T Consensus 252 lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 252 LVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred hHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 4567888888888888888877777665431 111110001123455666788888888888999988887655442111
Q ss_pred hhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHhcC--c-----hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC
Q 000146 973 SKGVLSDILKCLGDN-KKHMRECTLTVLDAWLAAVH--L-----DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1044 (2052)
Q Consensus 973 ~~~llp~ll~~l~D~-k~~VR~aa~~aL~~i~~~~~--l-----~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~ 1044 (2052)
=..|+.+++..|.-. +..+.=+|..+|..++.+.. . ..-+|.+.+.+.+.. ..++.++-..++..--.-.
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~p--vsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGP--VSVQSEISACIAQLALNDN 408 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCC--hhHHHHHHHHHHHHHhccc
Confidence 223666677666432 23367777788887776331 1 123456667776653 4566666666654322211
Q ss_pred CCCch--hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc
Q 000146 1045 GFPDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAG 1082 (2052)
Q Consensus 1045 ~~~~~--~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~ 1082 (2052)
....+ ..+++.++..+.|.+.+||-.|.++|.-|...+
T Consensus 409 ~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 409 DKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred cHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 11111 235556788889999999999999997766443
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.78 E-value=3 Score=52.85 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=77.2
Q ss_pred hcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 000146 373 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV 451 (2052)
Q Consensus 373 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L 451 (2052)
++|.|--|++.|.-+||.+|-.= ...++..++.+.++ ++.||-...-+|.-.|.. ++....++.+..-+
T Consensus 561 vsD~nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag--~G~~~a~diL~~L~ 630 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSESHNFHVRAGVAVALGIACAG--TGDKVATDILEALM 630 (926)
T ss_pred cccCchHHHHHHHHheeeeEecC--------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcC--CccHHHHHHHHHHh
Confidence 55777777777777666654221 13566667777654 677887777777766654 44444444444445
Q ss_pred hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChH
Q 000146 452 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPE 499 (2052)
Q Consensus 452 ~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~ 499 (2052)
.+-|--||+.++-.+..++.+|.+. +.+.++.|...+-..+.|.+.+
T Consensus 631 ~D~~dfVRQ~AmIa~~mIl~Q~n~~-Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 631 YDTNDFVRQSAMIAVGMILMQCNPE-LNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred hCcHHHHHHHHHHHHHHHHhhcCcc-cChhHHHHHHHHHHHHhhhhHh
Confidence 6778888888888888877777654 4555677777788888777764
|
|
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=84.70 E-value=86 Score=41.70 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=75.4
Q ss_pred ChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--hhhHH--HHHHHHhcCccChhHHHHHHHHHHHHhc
Q 000146 966 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--DKMVP--YVTTALTDAKLGAEGRKDLFDWLSKQLT 1041 (2052)
Q Consensus 966 g~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l--~~ll~--~l~~~L~~~k~np~~R~~~l~~L~~~l~ 1041 (2052)
...+++.+..++|+++.+++.....||..+.+.+..+-..+.. .--+| .|....+++..++.+|.-.+-|+..-++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 4568899999999999999999999999999999999887753 22344 5666676654458899999999988877
Q ss_pred cCCCCCchhhhHHHHHhhcCCCC
Q 000146 1042 GLSGFPDAAHLLKPASIAMTDKS 1064 (2052)
Q Consensus 1042 ~~~~~~~~~~ll~pl~~~L~D~~ 1064 (2052)
..+.. +-..+++.++.++....
T Consensus 94 Rl~~~-e~~~llP~ll~~is~~~ 115 (501)
T PF13001_consen 94 RLDDE-ERRELLPSLLKGISKKP 115 (501)
T ss_pred cCCHH-HHHHHHHHHHHhhccCc
Confidence 76432 34567777888887443
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain | Back alignment and domain information |
|---|
Probab=84.65 E-value=6.6 Score=41.02 Aligned_cols=88 Identities=19% Similarity=0.201 Sum_probs=62.6
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhh--hHHHHHHH----Hh--
Q 000146 343 DAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSR--FLLPVLLE----KL-- 414 (2052)
Q Consensus 343 eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~--~llp~LL~----kl-- 414 (2052)
..+.+|..++... +..+.++++.|.++|.+.|..++..|+.++..+.+--+..|..++. .++-.++. ..
T Consensus 19 ~~i~~i~d~~~~~---~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~ 95 (115)
T cd00197 19 PLIMEICDLINET---NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLG 95 (115)
T ss_pred HHHHHHHHHHHCC---CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhcccccc
Confidence 4566676666432 3557899999999999999999999999999999999988876543 23333322 11
Q ss_pred ccCcHHHHHHHHHHHHHHH
Q 000146 415 KEKKPTVAESLTQTLQAMH 433 (2052)
Q Consensus 415 kdkK~~V~~aa~~aL~ai~ 433 (2052)
++....||+.+...+..+.
T Consensus 96 ~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 96 DDVSTNVREKAIELVQLWA 114 (115)
T ss_pred CCCChHHHHHHHHHHHHHh
Confidence 2335678887777776653
|
The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra |
| >PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM | Back alignment and domain information |
|---|
Probab=84.52 E-value=12 Score=40.61 Aligned_cols=96 Identities=26% Similarity=0.401 Sum_probs=70.8
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHH
Q 000146 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 410 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 410 (2052)
+.+.+|. ++..|..+++.. +..-.+.+++|+++|+..|++++..|+.++..+.+--|..|... ...++..|
T Consensus 18 ~~~~Dw~----~~l~icD~i~~~---~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l 90 (140)
T PF00790_consen 18 LPSPDWS----LILEICDLINSS---PDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDEL 90 (140)
T ss_dssp SSS--HH----HHHHHHHHHHTS---TTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCCCHH----HHHHHHHHHHcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHH
Confidence 4556784 344455555432 23347899999999999999999999999999999999888654 34677777
Q ss_pred HHHhccCcH-H---HHHHHHHHHHHHHHh
Q 000146 411 LEKLKEKKP-T---VAESLTQTLQAMHKA 435 (2052)
Q Consensus 411 L~klkdkK~-~---V~~aa~~aL~ai~~~ 435 (2052)
...++.+.. . |++-+.+.+..|...
T Consensus 91 ~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 91 VKLIKSKKTDPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHTTTHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCchhHHHHHHHHHHHHHHHH
Confidence 776666543 2 899999999988875
|
Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A .... |
| >COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.13 E-value=30 Score=44.66 Aligned_cols=176 Identities=19% Similarity=0.108 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHH
Q 000146 365 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV 444 (2052)
Q Consensus 365 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll 444 (2052)
++..+.+.+.....+|+.-.|+.|..+....|+-=+.....++-.|.+++-|.-+.||-.|..||..+-.-.-..=.++.
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~ 171 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIV 171 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHH
Confidence 34444454554456678888899888888777643455667788888888999999998888887776553111123444
Q ss_pred HHHHHHhh-cCChHHHHHHHHHHHH-------HHHhcCh------h-HHHHhhhhH-----------HHHHHHhhcCCCh
Q 000146 445 EDVKTSVK-NKVPLVRSLTLNWVTF-------CIETSSK------A-AVLKVHKDY-----------VPICMECLNDGTP 498 (2052)
Q Consensus 445 ~~l~~~L~-~Knp~vR~~~l~~L~~-------~l~~~~~------~-~l~~~l~~l-----------~p~l~k~l~Ds~~ 498 (2052)
..+...++ +.+..||..++.-+.. +++.+-. . ....+++.+ +-.+..+++|..-
T Consensus 172 n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~ 251 (885)
T COG5218 172 NLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDREF 251 (885)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhhhh
Confidence 44444555 4456888877654431 1222100 0 011111111 1145678899999
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHh
Q 000146 499 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 540 (2052)
Q Consensus 499 ~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~ 540 (2052)
.||.++..+++.-+..--+-.+-.+++.||-.+++-....++
T Consensus 252 sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik 293 (885)
T COG5218 252 SVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIK 293 (885)
T ss_pred hHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999987776655555677888888776654343333
|
|
| >PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) | Back alignment and domain information |
|---|
Probab=83.24 E-value=10 Score=46.63 Aligned_cols=147 Identities=15% Similarity=0.093 Sum_probs=114.9
Q ss_pred CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC
Q 000146 360 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN 439 (2052)
Q Consensus 360 ~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~ 439 (2052)
.|..=....|-..+.-+..+|.-.-++.++..--.|++.+.+..+.++..+|--+.|....+.+.+...++.+... .+
T Consensus 93 ~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~--v~ 170 (307)
T PF04118_consen 93 QDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEA--VG 170 (307)
T ss_pred hhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHh--cC
Confidence 3444455667777778888889888999998887888888899999999999999998999999999999999875 56
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-----------hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHH
Q 000146 440 LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-----------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVL 508 (2052)
Q Consensus 440 l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~-----------~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l 508 (2052)
-+-+...+...+- .+|.+|..++.|+.+-+.... ...+.....-++.++..+++|.+--|+..+.+.+
T Consensus 171 ~~~F~~~lwl~ii-~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlL 249 (307)
T PF04118_consen 171 DKYFWQCLWLCII-TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLL 249 (307)
T ss_pred hhHHHHHHHHHHh-cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 5667777766554 679999999999999876533 1111122355889999999999999987776665
Q ss_pred H
Q 000146 509 A 509 (2052)
Q Consensus 509 ~ 509 (2052)
-
T Consensus 250 l 250 (307)
T PF04118_consen 250 L 250 (307)
T ss_pred H
Confidence 4
|
DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis []. |
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.20 E-value=19 Score=44.95 Aligned_cols=112 Identities=15% Similarity=0.244 Sum_probs=86.6
Q ss_pred HHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CCH
Q 000146 366 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNL 440 (2052)
Q Consensus 366 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~-----~~l 440 (2052)
+..|...++.-|..|+..|+.-|.++-..--.....+...+++.+.+..-|....||++...+++.++-..| ...
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 344555667888888999988888776652122334666788888888999999999999999999765423 223
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000146 441 VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 477 (2052)
Q Consensus 441 ~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~ 477 (2052)
.-+++.+..+|.|-.|.+|..++.||..++..+++..
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 5567788889999999999999999999999987653
|
|
| >KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.93 E-value=16 Score=50.86 Aligned_cols=144 Identities=18% Similarity=0.192 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHh---c-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHhc
Q 000146 362 FTEVCRTLKKLI---T-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKL-KEKKPTVAESLTQTLQAMHKAG 436 (2052)
Q Consensus 362 y~~l~~~L~k~l---~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~kl-kdkK~~V~~aa~~aL~ai~~~~ 436 (2052)
.+.+.+.+.+.+ + -+|+.+...|--|++.|.-- ... |...-+|.++.-+ |-+.+.||..+..++.-+.-..
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~---fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAE---FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHH---HHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 445555555554 2 55677888888887766532 222 3444455555555 3567888887777776665421
Q ss_pred CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 437 CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 437 ~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
.+-++..-+.+..-|.+-++.||..|+..|..++-+. ..+ ++-.++.+..|+.|.++++|+-|..-|-.+...
T Consensus 993 pnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miK-VKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 993 PNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIK-VKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred ccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhH-hcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence 3346777888999999999999999999999888642 222 255678899999999999999999777666543
|
|
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=82.90 E-value=25 Score=45.54 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=108.1
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc-hHHHHHHHHHHHHHHH---HHh-Ch---
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVA---SAM-GP--- 967 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds-N~~V~~~Al~~l~~la---~al-g~--- 967 (2052)
++.+.+.+.+-..|++||+.|+. ...++.|++.|...+.+. ..+|++.-+..|..+. .++ ..
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~T----------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLET----------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhcc----------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34455666888999999998852 123588999998888664 3444444444333333 333 21
Q ss_pred hhHHhhhHHHHHHHHHhCC----------CcHHHHHHHHHHHHHHHHhcC--c----hhhHHHHHHHHhcCccChhHHHH
Q 000146 968 AVEKSSKGVLSDILKCLGD----------NKKHMRECTLTVLDAWLAAVH--L----DKMVPYVTTALTDAKLGAEGRKD 1031 (2052)
Q Consensus 968 ~~~~~~~~llp~ll~~l~D----------~k~~VR~aa~~aL~~i~~~~~--l----~~ll~~l~~~L~~~k~np~~R~~ 1031 (2052)
.+++|+..++|.++.|+-. +.=.+|+-|...+..++.+.+ . ..++..+..++.+.+........
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 3789999999999998853 344689999999999998875 2 34555566666554334556677
Q ss_pred HHHHHHHHhccCCC---CCchhhhHHHHHhhcCCCCH---HHHHHHHHHHHHHHHHcCh
Q 000146 1032 LFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSS---DVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1032 ~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~---dVRkaA~~~L~~l~~~~G~ 1084 (2052)
++..|..+-..... .+.+.....-+-..+.+.+. -....|..+...|..+...
T Consensus 361 ai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 361 AIAGLSELGHEVIRTVILPNLKEYNERLQSVLDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHHHHhhhhhhhheeccchHHHHHHhhhhcccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 77666643221111 12223222223333443332 2356677777777766654
|
|
| >PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] | Back alignment and domain information |
|---|
Probab=82.81 E-value=7 Score=43.63 Aligned_cols=112 Identities=15% Similarity=0.230 Sum_probs=79.2
Q ss_pred hhhhhHHHHHHHHhccCc------------------HHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHhhcCChHHH
Q 000146 401 GSSRFLLPVLLEKLKEKK------------------PTVAESLTQTLQAMHKAGC---LNLVDVVEDVKTSVKNKVPLVR 459 (2052)
Q Consensus 401 ~~~~~llp~LL~klkdkK------------------~~V~~aa~~aL~ai~~~~~---~~l~~ll~~l~~~L~~Knp~vR 459 (2052)
++...++|.++..++-++ -.+|.+|.+|+.+++.. | ..+..+++.+..|+++ ...+|
T Consensus 5 ~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~-~~~~~~~~~~~~~v~~GL~D-~~DIk 82 (169)
T PF08623_consen 5 PHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDT-CLSRIDISEFLDRVEAGLKD-EHDIK 82 (169)
T ss_dssp TTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHS-TCSSS-HHHHHHHHHHTTSS--HHHH
T ss_pred HHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHhhcCC-cHHHH
Confidence 456677777776665543 35999999999999987 4 4578889999999999 99999
Q ss_pred HHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhc------------CCChHHHHHHHHHHHHHHHHh
Q 000146 460 SLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN------------DGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 460 ~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~------------Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
.-|...|.++...++ ..+...++.+++.+.+.|+ |...+.-.++.+++..+...+
T Consensus 83 ~L~~~~l~kl~~~~p-~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i 149 (169)
T PF08623_consen 83 MLCHLMLSKLAQLAP-EEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKI 149 (169)
T ss_dssp HHHHHHHHHHHHS-H-HHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999877654 4455668889998888883 223344455555555554444
|
; PDB: 4A0C_A 1U6G_C. |
| >KOG1949 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.76 E-value=6.8 Score=51.09 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=102.3
Q ss_pred HhhhccchHHHHHHHHHHHHHHHHHhChhh-----HHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh----cC---
Q 000146 940 RGRLYDSNKNLVMATLITLGAVASAMGPAV-----EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA----VH--- 1007 (2052)
Q Consensus 940 ~~rL~DsN~~V~~~Al~~l~~la~alg~~~-----~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~----~~--- 1007 (2052)
-.-|.-.|.+|+..|+.++-.+..-.|++. +..+..=.--+.+.|.|.-+.||..|...+..+... .+
T Consensus 180 ~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i 259 (1005)
T KOG1949|consen 180 WRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTI 259 (1005)
T ss_pred HHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 344567899999999999888887777764 344444455677889999999999998887766543 33
Q ss_pred chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1008 LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1008 l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
+..++..|.+-+.... ..++|..+++.|...+.+-...+-+..+++.+--.|.|.+..||-|+...|..+-.+
T Consensus 260 ~~~ll~kI~d~~a~dt-~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 260 LIDLLKKITDELAFDT-SSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHHHHHHHHhhhcc-chheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 3445555666665443 368999999999877665333444555666677788999999999999988766543
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=82.68 E-value=2e+02 Score=43.75 Aligned_cols=294 Identities=11% Similarity=0.090 Sum_probs=154.3
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhccccch----HH-HHHHHHHhcCCCC-cccHHHHHHHHHHHHHHHHHHcCCC-
Q 000146 644 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQ----SV-EILVRLVCMLPGW-SEKNVQVQQQVIEVINYLAATATKF- 716 (2052)
Q Consensus 644 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~----~~-~~Lv~~L~~~pg~-~DsN~qV~~~~Le~l~~l~~~~~~~- 716 (2052)
.++....+.+-..++-|+..|.++....-+.+. .. ..+++-|... + +-.+..|.+.+++++..++......
T Consensus 1141 hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~i--m~~s~~~eVrE~ILeCv~qmI~s~~~nI 1218 (1780)
T PLN03076 1141 FFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIV--MRKSNAVEIRELIIRCVSQMVLSRVNNV 1218 (1780)
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHH--HHhcCchHHHHHHHHHHHHHHHHHHhhh
Confidence 344444566667788888877655433111110 11 1222322110 1 2345578888888888877654332
Q ss_pred --chhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhCh------hHH----HHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 000146 717 --PKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGP------GFI----FERLYKIMKDHKNPKVLSEGILWMVSA 784 (2052)
Q Consensus 717 --~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~------~~V----l~~L~~~l~~~KnpKv~~e~L~~L~~~ 784 (2052)
+++.+..++..... --+..+-..|.+++..++..+-. .-. +..+.....+..++++-..++..|..+
T Consensus 1219 kSGWktIF~VLs~aa~-d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~ 1297 (1780)
T PLN03076 1219 KSGWKSMFMVFTTAAY-DDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFC 1297 (1780)
T ss_pred hcCcHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHH
Confidence 34444444443321 11123456677777666543111 122 333334443344577777777777655
Q ss_pred HHHh--C---C---------------------CC----CC----hH---hHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH
Q 000146 785 VEDF--G---V---------------------SH----LK----LK---DLIDFCKDTGLQSSAAATRNATIKLLGALHK 827 (2052)
Q Consensus 785 i~~f--G---~---------------------~~----l~----~k---~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~ 827 (2052)
...+ | . .. .+ .. +++.-+.++ ..+..++||..|+..|-.+..
T Consensus 1298 ~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l-~~D~RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076 1298 ATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSEL-SFDPRPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred HHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHH
Confidence 4333 1 0 00 00 01 122223344 457899999999999988888
Q ss_pred hhChhhHh-----hhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcC
Q 000146 828 FVGPDIKG-----FLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE 902 (2052)
Q Consensus 828 ~~G~~l~~-----~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~ 902 (2052)
..|..|.. .+..+--.+...+...++......+ +.+.+. .+. ...+
T Consensus 1377 ~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~--~~~~~~------------~~~---------------~~~e 1427 (1780)
T PLN03076 1377 NHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEP--EGQGVD------------GDQ---------------GELD 1427 (1780)
T ss_pred HhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccc--cccccc------------ccc---------------cchh
Confidence 88876543 1233333333334333221110000 000000 000 0112
Q ss_pred CCCh--HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHH
Q 000146 903 SPDW--KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 971 (2052)
Q Consensus 903 d~~W--k~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~ 971 (2052)
.+.| ..-..|+..+-.+...--..|.+ .+.+++..|...+...|..+...++.|+..|....|..|..
T Consensus 1428 ~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~ 1497 (1780)
T PLN03076 1428 QDAWLYETCTLALQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSD 1497 (1780)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCH
Confidence 3458 34566777777776532122222 35677777778888999999999999999999999998864
|
|
| >cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins | Back alignment and domain information |
|---|
Probab=82.45 E-value=22 Score=38.62 Aligned_cols=80 Identities=8% Similarity=0.057 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHhhcC------CChHHHHHHHHHHHH
Q 000146 438 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND------GTPEVRDAAFSVLAA 510 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~D------s~~~VR~aA~~~l~~ 510 (2052)
.+..+.+..|..-++++||.+-..++..|..|+++|+...-... -+.++..+++++.+ +++.||+...+.+-.
T Consensus 34 ~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 34 EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 34556666677778999999999999999999999986532221 25677778888753 689999999999988
Q ss_pred HHHHhCC
Q 000146 511 IAKSVGM 517 (2052)
Q Consensus 511 l~~~~Ge 517 (2052)
....++.
T Consensus 114 W~~~f~~ 120 (139)
T cd03567 114 WTLELPH 120 (139)
T ss_pred HHHHhcc
Confidence 8887763
|
The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system. |
| >KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.33 E-value=2.2e+02 Score=39.35 Aligned_cols=473 Identities=12% Similarity=0.108 Sum_probs=221.3
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHh-hccCCCCchhhhhhcccccccccchhhHhh-hhcccccccccccccchhhhhhch
Q 000146 16 WEDRLLHKNWKVRNEANIDLAALC-DSITDPKDNRIRELGQFSFIVSDLTFVWIR-IEHCGCEMMRCRFTSIYSFVLMLG 93 (2052)
Q Consensus 16 l~~rl~hk~WK~R~~~yeel~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~ 93 (2052)
..+...||.|--|..-|-.+.... .+..-+.+..|..| -+|....++. .+...+-.+-|-.|.+..++....
T Consensus 391 ~~e~~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W------~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll~~L~ 464 (982)
T KOG2022|consen 391 INETQQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSW------SSDSREQFESYRKDISDLLMSSYSILGDGLLDFLI 464 (982)
T ss_pred hhccCCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccC------CcchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346678899999988888877654 33222222233322 0000000000 000000011122334445555556
Q ss_pred hHHHHHhccCc--HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC---C--ChhHHHHHHHHHHHHHhh--hh
Q 000146 94 PLFKKTVADSN--APVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT---G--RPKTVEKAQAVFMLWVEL--EA 164 (2052)
Q Consensus 94 ~l~~k~v~DsN--~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~---~--r~~tk~~A~~~~l~~~e~--~~ 164 (2052)
+-+.++++|+- +..-+.--.|+..|-..+.. .+.....+++.+++-+.. + ++++-.-+.+.+-.+.+- +.
T Consensus 465 ~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~-~~~t~~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~ 543 (982)
T KOG2022|consen 465 DTLEQALAAGDEDPDSLNRTEACIFQFQSVAEY-LGETESTWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEH 543 (982)
T ss_pred HHHHHhhhccCCCchHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcC
Confidence 66777777665 44444444455555444432 333445778888887654 3 666666677776666554 33
Q ss_pred h---hhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhC--CCChhHHHHHHHHHHHHHHhh
Q 000146 165 V---DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFD--HQDQNVRASSKGLTLELCRWI 238 (2052)
Q Consensus 165 ~---~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~--~~dk~VR~~a~~l~vely~~l 238 (2052)
| ...++.|..|+. |+|.-..++..|..+.+.=-...-| ...++..+-.++- +.-..+|...+..++-+...+
T Consensus 544 P~~ln~sl~~L~~~Lh--~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~ 621 (982)
T KOG2022|consen 544 PMYLNPSLPLLFQGLH--NSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRL 621 (982)
T ss_pred CcccCchHHHHHHHhc--CchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhc
Confidence 3 466777888874 6666666666666555442221111 2234444444443 233467777766666665555
Q ss_pred CCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCC-CCCCCCCCCCCCCCCCc
Q 000146 239 GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEE-STADVPPEIDEYELVDP 317 (2052)
Q Consensus 239 G~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~iD~~dl~~~ 317 (2052)
-++.+-..+ ..|-...+.+|+.-++ ++-.-|.+-.|..-..-...+- .... ..+.+. +.+.+.....||--.++
T Consensus 622 ~pEe~~kyl-~~lin~il~qle~~l~--~~i~~~e~~l~~~~~l~~iS~L-ftSL-~~~~~~~d~d~~~~~~~~~qq~~i 696 (982)
T KOG2022|consen 622 KPEEIPKYL-MKLINPILSQLEINLA--PGIDDQENHLRIAFQLNTISAL-FTSL-INKKDIIDTDQPEQREEPFQQFPI 696 (982)
T ss_pred cHHhHHHHH-HHHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHH-Hhcc-CCCCccccccchhhhccccccCCH
Confidence 432221222 1222222333433321 1112233322221110000000 0000 000000 01111111112211111
Q ss_pred ccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHh
Q 000146 318 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGL 395 (2052)
Q Consensus 318 vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L 395 (2052)
+.++ . .++..+.+++. -.+..|+..+|...+.=.+.+
T Consensus 697 l~v~---------------------------~--------------k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~ 735 (982)
T KOG2022|consen 697 LQVL---------------------------Q--------------KAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSL 735 (982)
T ss_pred HHHH---------------------------H--------------HHHHHHHHHHHHHhcchhHHHHHHHHHHhccccc
Confidence 1111 1 12222333222 223445777766655444555
Q ss_pred hhcc-hhhhhhHHHHHHHHhccCcHHHHHHHHHH-HHHHHHh-cCCCH-----HHHHHHHHHHhh----cCChHHHHHHH
Q 000146 396 RTHF-SGSSRFLLPVLLEKLKEKKPTVAESLTQT-LQAMHKA-GCLNL-----VDVVEDVKTSVK----NKVPLVRSLTL 463 (2052)
Q Consensus 396 ~~~f-~~~~~~llp~LL~klkdkK~~V~~aa~~a-L~ai~~~-~~~~l-----~~ll~~l~~~L~----~Knp~vR~~~l 463 (2052)
++.| +|++..+.+-+.. +-..-..+......+ +...+.. .|.++ ...++..+.... .-+|.+-.+..
T Consensus 736 ~~sF~~p~l~~l~~Fi~r-~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~ 814 (982)
T KOG2022|consen 736 LTSFPEPMLPSLCPFIVR-FLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLI 814 (982)
T ss_pred cccchhhhHHHHHHHHHH-hccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHH
Confidence 6668 7788888777776 655554444443333 3333322 23332 111222222222 23578888889
Q ss_pred HHHHHHHHhcChhHHH--Hhhh-hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHh
Q 000146 464 NWVTFCIETSSKAAVL--KVHK-DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIA 540 (2052)
Q Consensus 464 ~~L~~~l~~~~~~~l~--~~l~-~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~ 540 (2052)
.|+...++..+.-... .... -+.+....+|+-+.+..-.+|.+-+..+...-++.......+-........|...+.
T Consensus 815 ~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s~~~~tv~~~V~~~G~~Li~~im~ 894 (982)
T KOG2022|consen 815 GFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATSHDLVTVTSVVAEIGPILIYAIMR 894 (982)
T ss_pred HHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcccchhHHHHHHHHhcchHHHHHHHH
Confidence 9999999887642111 2223 355577888888877655566666666766666644444333333333344444444
Q ss_pred cCCC
Q 000146 541 GSGG 544 (2052)
Q Consensus 541 ~~~~ 544 (2052)
+.||
T Consensus 895 ~vgg 898 (982)
T KOG2022|consen 895 GVGG 898 (982)
T ss_pred HhcC
Confidence 5444
|
|
| >PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional | Back alignment and domain information |
|---|
Probab=82.20 E-value=36 Score=51.13 Aligned_cols=182 Identities=13% Similarity=0.155 Sum_probs=121.4
Q ss_pred ChHHHHHHHHHHHHHhc----CCCCCCCCh-HHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHH
Q 000146 337 KWSERKDAVAELTKLAS----TKRIAPGDF-TEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVL 410 (2052)
Q Consensus 337 kWkeR~eaL~~L~~L~~----~~ki~~~dy-~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~L 410 (2052)
+=..+.-|++.|++++- ...+..-.+ .++++-|..++. ..+..|....++|+.+|...-+..+..-++.++..+
T Consensus 1150 n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VL 1229 (1780)
T PLN03076 1150 NLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVF 1229 (1780)
T ss_pred chhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 44567778887777652 121221222 378888888777 667789999999999999888777877888888888
Q ss_pred HHHhccCcHHHHHHHHHHHHHHHHhc--C------CCHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhc---C----
Q 000146 411 LEKLKEKKPTVAESLTQTLQAMHKAG--C------LNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETS---S---- 474 (2052)
Q Consensus 411 L~klkdkK~~V~~aa~~aL~ai~~~~--~------~~l~~ll~~l~~~L~~K-np~vR~~~l~~L~~~l~~~---~---- 474 (2052)
--.++++.+.+++.+.+++..++... + ..+.+++.-+....+.+ +..+=..++.+|..|.... +
T Consensus 1230 s~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~ 1309 (1780)
T PLN03076 1230 TTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSS 1309 (1780)
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhcccccc
Confidence 88889999999999999999887641 1 12334444444444444 3555566666666542111 0
Q ss_pred ----------------------------hhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000146 475 ----------------------------KAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 475 ----------------------------~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~ 518 (2052)
......+.=.++-.+..+..|..++||..|.+.|-.+....|..
T Consensus 1310 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1310 SRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred ccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 00001122223444556678999999999999998888888854
|
|
| >cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain | Back alignment and domain information |
|---|
Probab=82.20 E-value=6.5 Score=41.52 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=52.7
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhh-----------cCCChHHHHHHHH
Q 000146 438 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL-----------NDGTPEVRDAAFS 506 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l-----------~Ds~~~VR~aA~~ 506 (2052)
....++++.|..-|++|+|.||.-+|..|..++...+. .|...+..-...+..|. +|....||.+|.+
T Consensus 34 ~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~-~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~E 112 (122)
T cd03572 34 GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNS-DFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQE 112 (122)
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCH-HHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHH
Confidence 34567888888888999999999999999988876543 34433333333333333 3567799999999
Q ss_pred HHHHHH
Q 000146 507 VLAAIA 512 (2052)
Q Consensus 507 ~l~~l~ 512 (2052)
++..|.
T Consensus 113 l~~~if 118 (122)
T cd03572 113 LIKAIF 118 (122)
T ss_pred HHHHHh
Confidence 998775
|
The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t |
| >KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=81.99 E-value=43 Score=43.41 Aligned_cols=177 Identities=18% Similarity=0.191 Sum_probs=109.8
Q ss_pred cHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcC--CC----CcccHHHHHHHHHHHHHHHHHHcCC
Q 000146 642 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML--PG----WSEKNVQVQQQVIEVINYLAATATK 715 (2052)
Q Consensus 642 ~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~--pg----~~DsN~qV~~~~Le~l~~l~~~~~~ 715 (2052)
=.++.+.|.+.+-..|.+|++.|.. |.-.+.++.+|... -+ ..-.|...+-..++++..|..+-.-
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~T--------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLET--------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc--------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 3678888888999999999999872 12234444444221 11 2246788888888888888887333
Q ss_pred CchhhHHHHHHHHHHhhhch----h--------hhHHHHHHHHHHHhhhChhH------HHHHHHHHHhhC-CCHHHHHH
Q 000146 716 FPKKCVVLCLLGISERVADI----K--------TRAHAMKCLTTFSEAVGPGF------IFERLYKIMKDH-KNPKVLSE 776 (2052)
Q Consensus 716 ~~~~~~~~il~~LveKlgd~----K--------~r~~a~e~L~~l~E~~~~~~------Vl~~L~~~l~~~-KnpKv~~e 776 (2052)
|...++..++|.++..+... . +|+-|.+.+..+|..++..+ |+..+.+.+.+. +.+-.+-+
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 67777877777766554332 2 69999999999999887543 444444444444 55566667
Q ss_pred HHHHHHHHHHHhCCCCC------ChHhHHHHHHhhCCCC---CcHHHHHHHHHHHHHHHHhhCh
Q 000146 777 GILWMVSAVEDFGVSHL------KLKDLIDFCKDTGLQS---SAAATRNATIKLLGALHKFVGP 831 (2052)
Q Consensus 777 ~L~~L~~~i~~fG~~~l------~~k~li~~l~~~gL~~---~n~~VR~aA~~ll~~Ly~~~G~ 831 (2052)
++..|..+ |...+ +++.....+... +.. +|...+..|-.+.+.|+++.++
T Consensus 361 ai~gL~~l----g~~~I~~~ilp~L~~~~~~l~~~-l~~~~~~n~~~i~ea~~v~~~llk~~~~ 419 (576)
T KOG2549|consen 361 AIAGLSEL----GHEVIRTVILPNLKEYNERLQSV-LDVESLSNQLDIYEANKVYGALLKAENP 419 (576)
T ss_pred HHHHHHHh----hhhhhhheeccchHHHHHHhhhh-cccchhhhhhhhhhhhhHHHHHHHHhhH
Confidence 77666544 33221 344444444433 332 2334466666666666665543
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=81.93 E-value=15 Score=48.45 Aligned_cols=132 Identities=14% Similarity=0.134 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCCh
Q 000146 377 NIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVP 456 (2052)
Q Consensus 377 N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp 456 (2052)
+..+-..|++.|... -+.|......-+-++++.+.|....||..|...|-.+|......+..+.+.|..-|+...+
T Consensus 35 ~~k~K~Laaq~I~kf----fk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~QlL~tdd~ 110 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKF----FKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQLLQTDDP 110 (556)
T ss_dssp -HHHHHHHHHHHHHH----HCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHHHTT---H
T ss_pred CHHHHHHHHHHHHHH----HhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHHHHhcccH
Confidence 355666676666554 4567778899999999999999999999999999999885234578888888888998888
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000146 457 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 517 (2052)
Q Consensus 457 ~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge 517 (2052)
.....+-+.|..++...++..+...++.|.+. ...+..||+.+.+.+..-+.-++.
T Consensus 111 ~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~-----~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 111 VELDAVKNSLMSLLKQDPKGTLTGLFSQIESS-----KSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--------HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-----ccCchHHHHHHHHHHHHHHhhCcH
Confidence 88888888888888887777775555555432 245678999988887655555553
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) | Back alignment and domain information |
|---|
Probab=81.64 E-value=21 Score=38.41 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHhhcC---CChHHHHHHHHHHHHHHH
Q 000146 438 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLND---GTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~D---s~~~VR~aA~~~l~~l~~ 513 (2052)
.+..+.+..|..-++++||.+...++..|..|+.+++......+. +.++..+.+++.. .++.||..+.+.+.....
T Consensus 33 ~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 33 NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 466778888888899999999999999999999999764322222 3556667777765 588999999999999999
Q ss_pred HhCCh
Q 000146 514 SVGMR 518 (2052)
Q Consensus 514 ~~Ge~ 518 (2052)
.++..
T Consensus 113 ~f~~~ 117 (133)
T cd03561 113 SFGGH 117 (133)
T ss_pred HhcCC
Confidence 98863
|
It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me |
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=81.37 E-value=9.9 Score=39.32 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=57.2
Q ss_pred CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhc
Q 000146 454 KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 527 (2052)
Q Consensus 454 Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~L 527 (2052)
+...-|..++.-+..+++. ....+....+.++-.|..+++.. ++|+.|++|...+.+.+++..+.++++..
T Consensus 27 ~~~~ek~~~l~si~~lI~~-~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~ 97 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKL-GGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQI 97 (107)
T ss_pred CCHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4458899999999999984 34445566677777777777666 99999999999999999998888887764
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 | Back alignment and domain information |
|---|
Probab=81.34 E-value=2e+02 Score=38.29 Aligned_cols=116 Identities=15% Similarity=0.206 Sum_probs=80.5
Q ss_pred hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHh
Q 000146 397 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA--GCLNLVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIET 472 (2052)
Q Consensus 397 ~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~--~~~~l~~ll~~l~~~L~~K--np~vR~~~l~~L~~~l~~ 472 (2052)
..|++....++|++|.++.-.-..||..+.+.+..+-.- ....+.-=++.|+...++. ++.+|.-++.|+..-+.+
T Consensus 15 ~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~R 94 (501)
T PF13001_consen 15 EKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFDR 94 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhhc
Confidence 458888999999999999999999999999999988765 1122222234555555533 589999999999999988
Q ss_pred cChhHHHHhhhhHHHHHHHhhcCCC---hHHHHHHHHHHHHHHHHhC
Q 000146 473 SSKAAVLKVHKDYVPICMECLNDGT---PEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 473 ~~~~~l~~~l~~l~p~l~k~l~Ds~---~~VR~aA~~~l~~l~~~~G 516 (2052)
.+...- .+++|.+++++.... ..........+..++++..
T Consensus 95 l~~~e~----~~llP~ll~~is~~~~~~~~~~~~~~~~f~~~~k~~~ 137 (501)
T PF13001_consen 95 LDDEER----RELLPSLLKGISKKPKQHQDSFLRLARLFNILLKLLP 137 (501)
T ss_pred CCHHHH----HHHHHHHHHhhccCchhhhHHHHHHHHHHHHHhhcCC
Confidence 765543 567788888886322 2333334444444445543
|
4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ]. |
| >cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) | Back alignment and domain information |
|---|
Probab=81.29 E-value=22 Score=38.73 Aligned_cols=81 Identities=14% Similarity=0.204 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH-hhhhHHHHHHHhhc-CCChHHHHHHHHHHHHHHHHh
Q 000146 438 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK-VHKDYVPICMECLN-DGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~-~l~~l~p~l~k~l~-Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
.+..+.+..|..-++++||.+...++..|..|+++|+...... .-+.++..+.+++. ..++.||+...+.+......+
T Consensus 37 ~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 37 VQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred CCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4556677777778889999999999999999999987542221 12556777777775 688899999999999999888
Q ss_pred CCh
Q 000146 516 GMR 518 (2052)
Q Consensus 516 Ge~ 518 (2052)
+.+
T Consensus 117 ~~~ 119 (142)
T cd03569 117 RNK 119 (142)
T ss_pred CCC
Confidence 754
|
The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane. |
| >KOG4653 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.97 E-value=13 Score=49.98 Aligned_cols=180 Identities=16% Similarity=0.120 Sum_probs=120.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHh--ccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEE--ANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~--a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
.+.+..+.|+.--+|-.|+..+..+++. +...+. ...++.++...|.|-+.-|-..|++-+..++.. |
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~---~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y 799 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQ---GEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------Y 799 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhh---HHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------c
Confidence 3566778888888999999999999982 222222 245788999999999999999998877777755 5
Q ss_pred hhHHHHHHHHHhCCCcH-H---HHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhcc
Q 000146 973 SKGVLSDILKCLGDNKK-H---MRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG 1042 (2052)
Q Consensus 973 ~~~llp~ll~~l~D~k~-~---VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~ 1042 (2052)
-+.++|.+.+-+...|+ . .|--+-+++..+++..| .+.++..+...+.++ .-.-|...+..+..+...
T Consensus 800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP--DHEFRASSLANLGQLCQL 877 (982)
T ss_pred chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHH
Confidence 56788888885544332 2 34444467777777776 233333344444332 123487777777665544
Q ss_pred CCC--CCchhhhHHHHHhhc-CCCCHHHHHHHHHHHHHHHHHcChhH
Q 000146 1043 LSG--FPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILRAGGQET 1086 (2052)
Q Consensus 1043 ~~~--~~~~~~ll~pl~~~L-~D~~~dVRkaA~~~L~~l~~~~G~e~ 1086 (2052)
... +..+.+.+..++... .|...-||.+|...+..+....|++.
T Consensus 878 ~a~~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dl 924 (982)
T KOG4653|consen 878 LAFQVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDL 924 (982)
T ss_pred HhhhhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhh
Confidence 321 223334444444433 69999999999999999999999754
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=80.86 E-value=34 Score=38.29 Aligned_cols=129 Identities=10% Similarity=0.099 Sum_probs=90.3
Q ss_pred CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHh-hhcchhhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhc-
Q 000146 360 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL-RTHFSGSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAG- 436 (2052)
Q Consensus 360 ~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L-~~~f~~~~~~llp~LL~klkdkK-~~V~~aa~~aL~ai~~~~- 436 (2052)
...+.++..+...+.+.+..-+..++..++.++..- ..-|..+....+..|+..+.... +.+.+++..++..++...
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 356677777777888888888899999999998876 34577788888888888887644 678899999999999871
Q ss_pred ----------CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHH
Q 000146 437 ----------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 491 (2052)
Q Consensus 437 ----------~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k 491 (2052)
...+..+++.++.-++. ......++..|..++..++.. +-++...+-..+..
T Consensus 101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt-~rp~~~ki~~~l~~ 162 (165)
T PF08167_consen 101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTT-FRPFANKIESALLS 162 (165)
T ss_pred CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcc-ccchHHHHHHHHHH
Confidence 12234444444443333 677788999999999887643 33344444444443
|
|
| >KOG2149 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.68 E-value=7 Score=48.68 Aligned_cols=112 Identities=15% Similarity=0.146 Sum_probs=93.5
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChh-hHHhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSS 973 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~-~~~~~ 973 (2052)
.+++.+++--|-++|++|+..|.+++.. ++.+.-..+.+++.-+..++.|-...|+....+++..++..+++. ..++.
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 5788899999999999999999999975 344433346788899999999999999999999999988777665 47788
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000146 974 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 974 ~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
..+++-+...+...-+.||.-+...+..++..++
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 8888888888888888888888888888888776
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=80.51 E-value=12 Score=41.77 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=77.9
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHhChh---
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVASAMGPA--- 968 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D-sN~~V~~~Al~~l~~la~alg~~--- 968 (2052)
+..-+.+.+.++++..|-.|+..+..+++++...+--..++..+..|...|.. ....+...++.++..|...++..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l 105 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTL 105 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCch
Confidence 33456677899999999999999999998753444433457888888888854 45778889999999998776532
Q ss_pred ----hHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc
Q 000146 969 ----VEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV 1006 (2052)
Q Consensus 969 ----~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~ 1006 (2052)
..+++..+++.+++.+.+ ..+...+..+|..++.+.
T Consensus 106 ~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 106 TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 235566666666666665 445555666666665543
|
|
| >PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs) | Back alignment and domain information |
|---|
Probab=80.36 E-value=15 Score=40.56 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=60.8
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhhh--------ccchH---HH------HHHHHH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRL--------YDSNK---NL------VMATLI 956 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~--~~I~~~~~~eL~~aL~~rL--------~DsN~---~V------~~~Al~ 956 (2052)
+.+..+++.+=++|..|++.|..++.... ..+....|..++.+|...+ ...+. .. ...+..
T Consensus 8 ~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a~ 87 (155)
T PF11640_consen 8 SILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCAS 87 (155)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHH
Confidence 46788999999999999999999997532 4555566888888887654 11111 22 233444
Q ss_pred HHHHHHHHhChhhH-HhhhHHHHHHHHHhCCCc
Q 000146 957 TLGAVASAMGPAVE-KSSKGVLSDILKCLGDNK 988 (2052)
Q Consensus 957 ~l~~la~alg~~~~-~~~~~llp~ll~~l~D~k 988 (2052)
++..++...-+.|. +.+..++..|++.+.+..
T Consensus 88 ~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~ 120 (155)
T PF11640_consen 88 ALRLFVEKSNSRLKRKTVKALLDHITDLLPDPD 120 (155)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHhhCCc
Confidence 44444444433443 456777777777777766
|
Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity |
| >KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.35 E-value=26 Score=50.56 Aligned_cols=190 Identities=17% Similarity=0.192 Sum_probs=135.4
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~--~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 406 (2052)
...++.-++=..|..||++|..+++...... +-+......+.+++.|-+..|+....+.+..+..++++...||.+.+
T Consensus 46 I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l 125 (1312)
T KOG0803|consen 46 IVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL 125 (1312)
T ss_pred HHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 3444555666788899999999885322221 23666777888888899999999999999999999999999999999
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------C-CCHHHHHHHH----------------HHHhhcCChHHHHH
Q 000146 407 LPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------C-LNLVDVVEDV----------------KTSVKNKVPLVRSL 461 (2052)
Q Consensus 407 lp~LL~klkdkK~~V~~aa~~aL~ai~~~~--------~-~~l~~ll~~l----------------~~~L~~Knp~vR~~ 461 (2052)
+|..+-..-|.-..|..+|.++....+... | ..+-.++.++ .+.+..|-+++...
T Consensus 126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~s 205 (1312)
T KOG0803|consen 126 IPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISS 205 (1312)
T ss_pred hhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHH
Confidence 999999999999899999988887766420 1 1122222222 12234566788888
Q ss_pred HHHHHHHHHHhcChh-HHH---Hhhhh--HHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000146 462 TLNWVTFCIETSSKA-AVL---KVHKD--YVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 462 ~l~~L~~~l~~~~~~-~l~---~~l~~--l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~ 518 (2052)
++..+...+...... .+. .-.+. --..+-+.+.+..+.+|.+..+++-.+.+.+-..
T Consensus 206 sLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~ 268 (1312)
T KOG0803|consen 206 SLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR 268 (1312)
T ss_pred HHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence 888888888543321 111 11122 1235667889999999999999998887766543
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.14 E-value=24 Score=42.40 Aligned_cols=170 Identities=12% Similarity=0.117 Sum_probs=104.9
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCCCCCC--CChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhh
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTKRIAP--GDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRF 405 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~--~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ 405 (2052)
+.+.+.+.+-+.|..|+..|..++....-.. ..| +...+...+. ..|..+...++++|..|+. ..++...+..
T Consensus 59 I~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~--i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv--~~~~~~~l~~ 134 (254)
T PF04826_consen 59 IGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY--IPQVCEETVSSPLNSEVQLAGLRLLTNLTV--TNDYHHMLAN 134 (254)
T ss_pred HHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH--HHHHHHHHhcCCCCCHHHHHHHHHHHccCC--CcchhhhHHh
Confidence 3445667777889889999988763211000 122 3333444444 5688888889999998863 3333444556
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHhhcC-ChHHHHHHHHHHHHHHHhcCh----
Q 000146 406 LLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVV-----EDVKTSVKNK-VPLVRSLTLNWVTFCIETSSK---- 475 (2052)
Q Consensus 406 llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll-----~~l~~~L~~K-np~vR~~~l~~L~~~l~~~~~---- 475 (2052)
.+|.++..+......++..+..+|..+..+ ..-..+++ ..+..-++.+ +..+-..++.|+.++-....+
T Consensus 135 ~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~ 213 (254)
T PF04826_consen 135 YIPDLLSLLSSGSEKTKVQVLKVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYV 213 (254)
T ss_pred hHHHHHHHHHcCChHHHHHHHHHHHHhccC-HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccce
Confidence 677888888777777888888888888765 11112222 2333334433 457777888888887554321
Q ss_pred --------hHHH---HhhhhHHHHHHHhhcCCChHHHHH
Q 000146 476 --------AAVL---KVHKDYVPICMECLNDGTPEVRDA 503 (2052)
Q Consensus 476 --------~~l~---~~l~~l~p~l~k~l~Ds~~~VR~a 503 (2052)
..+. .-.+.+..-+..+..+++++||+.
T Consensus 214 ~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 214 FVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred eccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 1222 112557777778888999999875
|
|
| >KOG3961 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.11 E-value=8.4 Score=43.70 Aligned_cols=117 Identities=15% Similarity=0.256 Sum_probs=90.2
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHH---hChhh
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA---MGPAV 969 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~a---lg~~~ 969 (2052)
..+.|.++|.+.+.--|.-|-+.+.+++.....+|.|-. .+|+..|+.-|.-.|..|...+|++|+.|... .|..+
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVL-PqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVL-PQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhccccccccc-HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 345788999988888888999999998887678888875 99999999999999999999999999998864 46889
Q ss_pred HHhhhHHHHHHHHHhC------------CCcHHHHHHHHHHHHHHHHhcCchhh
Q 000146 970 EKSSKGVLSDILKCLG------------DNKKHMRECTLTVLDAWLAAVHLDKM 1011 (2052)
Q Consensus 970 ~~~~~~llp~ll~~l~------------D~k~~VR~aa~~aL~~i~~~~~l~~l 1011 (2052)
-+|-++++|.+ +.++ |++..+-+-..++|..+-.+-|.+.+
T Consensus 194 VPfYRQlLp~~-n~~k~~n~n~gd~idydk~~~igdlI~dTL~~LE~~GGpnAf 246 (262)
T KOG3961|consen 194 VPFYRQLLPVL-NTFKNSNVNRGDGIDYDKNRNIGDLINDTLKHLERSGGPNAF 246 (262)
T ss_pred hhHHHHhhhhh-hhhcccccccccccCccccccHHHHHHHHHHHHHHcCCccce
Confidence 99999999865 2332 33445555556666665555444443
|
|
| >KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.10 E-value=2.4e+02 Score=38.45 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=56.5
Q ss_pred HHHHHhhhchhhhHHHHHHHHHHHhhh----ChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC-hHhHHH
Q 000146 726 LGISERVADIKTRAHAMKCLTTFSEAV----GPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLID 800 (2052)
Q Consensus 726 ~~LveKlgd~K~r~~a~e~L~~l~E~~----~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~-~k~li~ 800 (2052)
..|.+-+-|--....+..+|..+..-. .|..-+..++..+ ---|..||+++...|.++. ..... ...+.-
T Consensus 432 ~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv-iLEn~ivRaaAv~alaKfg----~~~~~l~~sI~v 506 (865)
T KOG1078|consen 432 EHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV-ILENAIVRAAAVSALAKFG----AQDVVLLPSILV 506 (865)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh-hhhhhhhHHHHHHHHHHHh----cCCCCccccHHH
Confidence 334444444444444444444444422 1333334444432 3467889999988876654 33322 234556
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHH
Q 000146 801 FCKDTGLQSSAAATRNATIKLLGALH 826 (2052)
Q Consensus 801 ~l~~~gL~~~n~~VR~aA~~ll~~Ly 826 (2052)
.++.+ +.|++..||+.|.-.+..+-
T Consensus 507 llkRc-~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 507 LLKRC-LNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHH-hcCchHHHHHHHHHHHHHhh
Confidence 66775 99999999999998887776
|
|
| >PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] | Back alignment and domain information |
|---|
Probab=80.07 E-value=22 Score=43.54 Aligned_cols=138 Identities=13% Similarity=0.206 Sum_probs=104.7
Q ss_pred CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhc----ch--hhhhhHHHHHHHHhc--------cCcHHHHHHH
Q 000146 360 GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTH----FS--GSSRFLLPVLLEKLK--------EKKPTVAESL 425 (2052)
Q Consensus 360 ~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~----f~--~~~~~llp~LL~klk--------dkK~~V~~aa 425 (2052)
..+.-+++.+...+.|....+...+|+|+..+...+... +. .+...+..++...+- +....+...+
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~a 194 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAA 194 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHH
Confidence 345677888889999999999999999999999866532 33 346777777777777 7778888999
Q ss_pred HHHHHHHHHhc--------CCCHHHHHHH-HHHHhhc--C--ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHh
Q 000146 426 TQTLQAMHKAG--------CLNLVDVVED-VKTSVKN--K--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 492 (2052)
Q Consensus 426 ~~aL~ai~~~~--------~~~l~~ll~~-l~~~L~~--K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 492 (2052)
-.|+..++... ...+.+++-+ |+..+.+ + .+.++...+..+..++...+.. ..++++.++|.+...
T Consensus 195 y~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~-~~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 195 YPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGIS-SVKHLQRIIPVLSQI 273 (282)
T ss_pred HHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 99999986630 1225555544 6666652 2 5899999999999988876543 458899999999999
Q ss_pred hcCCCh
Q 000146 493 LNDGTP 498 (2052)
Q Consensus 493 l~Ds~~ 498 (2052)
|.+.+.
T Consensus 274 l~npf~ 279 (282)
T PF10521_consen 274 LENPFG 279 (282)
T ss_pred hcCCCc
Confidence 888753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2052 | ||||
| 2of3_A | 266 | Tog Domain Structure From C.Elegans Zyg9 Length = 2 | 7e-26 | ||
| 2qk2_A | 242 | Structural Basis Of Microtubule Plus End Tracking B | 2e-09 | ||
| 2qk1_A | 249 | Structural Basis Of Microtubule Plus End Tracking B | 6e-05 |
| >pdb|2OF3|A Chain A, Tog Domain Structure From C.Elegans Zyg9 Length = 266 | Back alignment and structure |
|
| >pdb|2QK2|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215 And Eb1 Length = 242 | Back alignment and structure |
|
| >pdb|2QK1|A Chain A, Structural Basis Of Microtubule Plus End Tracking By Xmap215, Clip-170 And Eb1 Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 245 bits (626), Expect = 2e-73
Identities = 66/255 (25%), Positives = 134/255 (52%)
Query: 1172 NVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLE 1231
K ++ +++ + ++ F+ P E I +L+ + + L +L DFK+ + L+
Sbjct: 9 EDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALD 68
Query: 1232 MLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTES 1291
L + + + ++ D+LL+W L+F ++N L+KVLE + + +RD +++
Sbjct: 69 SLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128
Query: 1292 EAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECV 1351
E + F+P L+ K+G + +R +R++ + + K P +L+ L+SKN R R EC+
Sbjct: 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALKSKNARQRSECL 188
Query: 1352 DLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGK 1411
++ + I + G L + VA ++D +R AA+N L +K G+ +W+ G+
Sbjct: 189 LVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAGR 248
Query: 1412 LTDAQKSMLDDRFKW 1426
+ D KS++++R K
Sbjct: 249 MADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 93.7 bits (232), Expect = 7e-21
Identities = 50/261 (19%), Positives = 104/261 (39%), Gaps = 12/261 (4%)
Query: 601 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 660
KK +++ KL + P++ + ++++ LG+ + QL +K+ L A
Sbjct: 8 NEDKKQRIKEEKQLKLVKWNFQ-APTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAA 66
Query: 661 ISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN----YLAATATK 715
+ SL + + L + ++L++ + + E N +V+E+ + T T
Sbjct: 67 LDSLVRLADTSPRSLLSNSDLLLKWCTLR--FFETNPAALIKVLELCKVIVELIRDTETP 124
Query: 716 FPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKV 773
++ V + + + + K R + S+ VGP + L +K KN +
Sbjct: 125 MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDALK-SKNARQ 183
Query: 774 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 833
SE +L + + + G+S LK + + RNA I +L A KF G +
Sbjct: 184 RSECLLVIEYYITNAGISPLKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQM 242
Query: 834 KGFLADVKPALLSALDAEYEK 854
+ S ++ ++
Sbjct: 243 WKAAGRMADKDKSLVEERIKR 263
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 1e-16
Identities = 40/228 (17%), Positives = 89/228 (39%), Gaps = 11/228 (4%)
Query: 886 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD 945
+ + + +L+ L D+K L +++++ ++ + + + + L R ++
Sbjct: 40 QTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFE 98
Query: 946 SNKNLVMATLITLGAVASAM----GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA 1001
+N ++ L + + P ++ + +L G+ K +MR +++
Sbjct: 99 TNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNV 158
Query: 1002 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSK--QLTGLSGFPDAAHLLKPASIA 1059
V KM P + AL A R + + G+S + + K +
Sbjct: 159 LSDVVGPLKMTPMLLDALKSKN--ARQRSECLLVIEYYITNAGISPLKSLS-VEKTVAPF 215
Query: 1060 MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1107
+ DK +VR AA +V + G + + K + +L+ ERIK
Sbjct: 216 VGDKDVNVRNAAINVLVACFKFEG-DQMWKAAGRMADKDKSLVEERIK 262
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 81.0 bits (199), Expect = 1e-16
Identities = 35/228 (15%), Positives = 80/228 (35%), Gaps = 10/228 (4%)
Query: 321 LTPLEKSGFWEGVKATKWSERKDAVAELTK-LASTKRIAPGDFTEVCRTLKKLITDVNIA 379
L K + + + A+ L + ++ R + + + + N A
Sbjct: 43 LGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPA 102
Query: 380 VAVEAIQAIGNLARGLRTH----FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKA 435
++ ++ + +R +P LL K E K + S+ + +
Sbjct: 103 ALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV 162
Query: 436 GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLND 495
+ + ++K+K RS L + + I + + + + D
Sbjct: 163 VGPLKM--TPMLLDALKSKNARQRSECLLVIEYYITNAGISPLK--SLSVEKTVAPFVGD 218
Query: 496 GTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSG 543
VR+AA +VL A K G + + ++ ++ D ++ + E I +G
Sbjct: 219 KDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERIKRTG 265
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 3e-16
Identities = 35/264 (13%), Positives = 79/264 (29%), Gaps = 45/264 (17%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIV 60
+S+ + LL K+ +L HK++K A L +L + +
Sbjct: 36 ISQLQTLLGNQAKVSLMSQLFHKDFKQHLAA---LDSLVRLADTSPRSLLSNS------- 85
Query: 61 SDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLK 120
DL W + ++N K L+ ++
Sbjct: 86 -DLLLKWCTLRFF----------------------------ETNPAALIKVLELCKVIVE 116
Query: 121 AADADAGR----YAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAI 176
+ K + + + + ++ ++ A+
Sbjct: 117 LIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL 176
Query: 177 KNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCR 236
K+K A+ + V+ ++ G + + K + +D NVR ++ + + +
Sbjct: 177 KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236
Query: 237 WIGKDPVKTILFEKMRDTMKKELE 260
+ G K +M D K +E
Sbjct: 237 FEGDQMWK--AAGRMADKDKSLVE 258
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 200 bits (509), Expect = 5e-58
Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 16/245 (6%)
Query: 310 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL--TKLASTKRI--APGDFTEV 365
++ IL L K F E + ++KW +R +A+ E + L+ TK++ +++ +
Sbjct: 3 HMASMLPEETILDKLPKD-FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNL 61
Query: 366 CRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH--FSGSSRFLLPVLLEKLKEKKPTVA 422
+I D NI A Q++ + L+T + LL++ KEKKP+V
Sbjct: 62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVI 121
Query: 423 ESLTQTLQAMHK-----AGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSK-- 475
E++ + L + K A D+++D+ +K+K P +R ++
Sbjct: 122 EAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGY 181
Query: 476 -AAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 534
+ + VPI ++ +ND P +R F A + K GM +++E LD+++R K
Sbjct: 182 STLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKK 241
Query: 535 LSEMI 539
+ E +
Sbjct: 242 IEETV 246
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 94.0 bits (233), Expect = 4e-21
Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 20/244 (8%)
Query: 882 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT--GELFGGL 939
LP E I K + + S WK R+E++E + K+++ L G
Sbjct: 6 SMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIY 65
Query: 940 RGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTL 996
+ D+N V ++ + + V + +L + K + E
Sbjct: 66 GHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIR 125
Query: 997 TVL-------DAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDA 1049
L D ++ + M+ + + + R + + +
Sbjct: 126 KALLTICKYYDPLASSGRNEDMLKDILEHMKHKT--PQIRMECTQLFNASMKEEKDGYST 183
Query: 1050 AHLLKPASIA------MTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL 1103
+ + D +R +++ G T K L+ + I
Sbjct: 184 LQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIE 243
Query: 1104 ERIK 1107
E +K
Sbjct: 244 ETVK 247
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 81.3 bits (200), Expect = 9e-17
Identities = 47/249 (18%), Positives = 91/249 (36%), Gaps = 31/249 (12%)
Query: 1205 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDII-------EVLDILLRWFVL 1257
++ +D R+ S+ +K +V+ LE ++ S K + +L I
Sbjct: 12 TILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQ- 70
Query: 1258 QFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRE 1317
+N + + + + D L+ G+S + ++ L++++ V E +R+
Sbjct: 71 --KDANIQAVALAAQSVELICDKLKTPGFS--KDYVSLVFTPLLDRTKEKKPSVIEAIRK 126
Query: 1318 LTKQIVNFYSATKT-------LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLK 1370
I +Y + L ILE ++ K + R+EC L + S +
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186
Query: 1371 SLQ-----IVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFK 1425
L+ IV + + IR + A KI G K + LD+ +
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM---NTFVKTLEH----LDNLKR 239
Query: 1426 WKVREMEKK 1434
K+ E K
Sbjct: 240 KKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 77.8 bits (191), Expect = 1e-15
Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 20/235 (8%)
Query: 639 SLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGW--SEKN 695
+P D ++ S+ WK+R+EA+ V + L + + L+ + + N
Sbjct: 15 DKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN 74
Query: 696 VQVQQQVIEVINYLAAT--ATKFPKKCVVLCLLGISERVADIKT--RAHAMKCLTTFSEA 751
+Q + + + F K V L + +R + K K L T +
Sbjct: 75 IQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY 134
Query: 752 VGPGFIFERLYKIMKD------HKNPKVLSEGILWMVSAVEDFGVSHLKL-----KDLID 800
P R ++KD HK P++ E +++++ + L +++
Sbjct: 135 YDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVP 194
Query: 801 FCKDTGLQSSAAATRNATIKLLGALHKFVGP-DIKGFLADVKPALLSALDAEYEK 854
+ + A R + L K G L + ++ +
Sbjct: 195 IVIQI-VNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKT 248
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 2e-05
Identities = 31/265 (11%), Positives = 75/265 (28%), Gaps = 52/265 (19%)
Query: 12 KKLP--WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIR 69
KLP +++R+ WK R EA L DS+ +S ++
Sbjct: 15 DKLPKDFQERITSSKWKDRVEA---LEEFWDSVLSQTKKLKSTSQNYSNLLGIYG----- 66
Query: 70 IEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKA--ADADAG 127
D+N A ++ +
Sbjct: 67 ---------------------------HIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99
Query: 128 RYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVEL-------EAVDVFLDVMEKAIKNKV 180
Y V + + +P +E + + + + L + + +K+K
Sbjct: 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKT 159
Query: 181 AKAVVPAIDVMFQALSEFGAKIIPP-----KRILKMLPELFDHQDQNVRASSKGLTLELC 235
+ + + ++ E ++ ++ ++ + +R L
Sbjct: 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219
Query: 236 RWIGKDPVKTILFEKMRDTMKKELE 260
+ G + L E + + +K++E
Sbjct: 220 KIFGMNTFVKTL-EHLDNLKRKKIE 243
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 1e-55
Identities = 64/308 (20%), Positives = 130/308 (42%), Gaps = 54/308 (17%)
Query: 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITD--PKDNRIRELGQFSF 58
MS EE+ + LP E+RL +K WK R EA +L L + +D+ I+ +
Sbjct: 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDP- 57
Query: 59 IVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAY 118
LF + + DSN Q++A+ AL +
Sbjct: 58 -----------------------------------TLFAQYITDSNVVAQEQAIVALNSL 82
Query: 119 LKAADADAGRYAK------EVCDAIAAKCLTG-RPKTVEKAQAVFMLWVELE-AVDVFLD 170
+ A + + + A + K LT R T ++ + + L+ ++ ++
Sbjct: 83 IDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVE 142
Query: 171 VMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPK----RILKMLPELFDHQDQNVRAS 226
++ + K+ K + A + +++ ++ FG + + +LK +P+L H D+NVR+
Sbjct: 143 LVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQ 202
Query: 227 SKGLTLELCRWIG--KDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKEL 284
+ L +E+ + G D ++ ILF+K++ K+L V ++ + + +EL
Sbjct: 203 TMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDEPSSSKMLFEWEKREL 262
Query: 285 GQELISED 292
++ E+
Sbjct: 263 EKKRSQEE 270
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 99.1 bits (246), Expect = 1e-22
Identities = 42/270 (15%), Positives = 90/270 (33%), Gaps = 35/270 (12%)
Query: 619 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSV 678
E+V+ + + LEE +L +WK RLEA L Q
Sbjct: 3 GEEEVDYTTLPLEE---------------RLTYKLWKARLEAYKELNQLFRNSVGDISRD 47
Query: 679 EILVRLVCMLPGW----SEKNVQVQQQVIEVINYL------AATATKFPKKCVVLCLLGI 728
+ + + ++ NV Q+Q I +N L ++ + +
Sbjct: 48 DNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLL 107
Query: 729 SERV---ADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAV 785
E+ + T+ +M C+ + L + K PK+++ + +
Sbjct: 108 VEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELM 167
Query: 786 EDFGVSHLKLKDLI-DFCKDTG--LQSSAAATRNATIKLLGALHKFVGPDI----KGFLA 838
FG++++ ++ + + K R+ T+ L+ ++K G + +
Sbjct: 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFK 227
Query: 839 DVKPALLSALDAEYEKNPFEGTVVPKKTVR 868
+KP + L + K E +
Sbjct: 228 KLKPIQVKDLHKLFAKVGDEPSSSKMLFEW 257
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 72.5 bits (177), Expect = 1e-13
Identities = 42/264 (15%), Positives = 80/264 (30%), Gaps = 25/264 (9%)
Query: 1214 LHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-----SNTTCLL 1268
L RL +K +++ + L + + DI +I + W SN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 1269 KVLEFLPELFDTLRDEGYSLTE--SEAAVFLPCLVEKS-GHNIEKVREKMRELTKQIVNF 1325
+ + L L D + + + P LVEK + + + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 1326 -YSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIV----ASLTA 1380
S T+++ ++ K + + V L+ G L + L
Sbjct: 134 DTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAG 193
Query: 1381 ERDGEIRKAALNTLATGYKILGEDIWR----YVGKLTDAQKSMLDDRFKWKVREMEKKKE 1436
D +R +N + YK+ G + KL Q L F K
Sbjct: 194 HGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLF--------AKVG 245
Query: 1437 GKPGEARAALRRSVRENGSDIAEQ 1460
+P ++ RE +++
Sbjct: 246 DEPSSSKMLFEWEKRELEKKRSQE 269
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 4e-13
Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 16/216 (7%)
Query: 337 KWSERKDAVAELTKLASTKRIAPGD------FTEVCRTLKKLITDVNIAVAVEAIQAI-- 388
W R +A EL +L + + ITD N+ +AI A+
Sbjct: 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNS 81
Query: 389 ----GNLARGLRTHFSGSSRFLLPVLLEK-LKEKKPTVAESLTQTLQAMHKAGCLNLVDV 443
+ H P+L+EK L + T + ++ ++
Sbjct: 82 LIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL-DTSITQS 140
Query: 444 VEDVKTSVKNKVPLVRSLTLNWVTFCIET--SSKAAVLKVHKDYVPICMECLNDGTPEVR 501
VE V + K+P + + N V + + V + + + G VR
Sbjct: 141 VELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVR 200
Query: 502 DAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSE 537
+++ I K G ++ ++ +
Sbjct: 201 SQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKD 236
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 3e-09
Identities = 41/266 (15%), Positives = 89/266 (33%), Gaps = 24/266 (9%)
Query: 897 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELF----GGLRGRLYDSNKNLVM 952
L + L WK RLE+ + +N++ + I +++ + DSN
Sbjct: 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQE 73
Query: 953 ATLITLGAVASAMGPAVEKSSKG-------VLSDILKCLGDNKKHMRECTLTVLDAWLAA 1005
++ L ++ A + K++ + K L ++ + +++ + +
Sbjct: 74 QAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGL 133
Query: 1006 VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQL-----TGLSGFPDAAHLLKPASIAM 1060
+ + KL + + + + + T ++ LLK
Sbjct: 134 DTSITQSVELVIPFFEKKL-PKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLA 192
Query: 1061 TDKSSDVRKAAEACIVEILRAGG------QETIEKNLKDIQGPALALILERIKLNGASQV 1114
+VR IVEI + G +E + K LK IQ L + ++ + S
Sbjct: 193 GHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVG-DEPSSS 251
Query: 1115 SMGPTSKSSSKVPKSASNGVSKHGNR 1140
M + K + + H +
Sbjct: 252 KMLFEWEKRELEKKRSQEEEAHHHHH 277
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 6e-51
Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 6/233 (2%)
Query: 310 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRT 368
+L+DPVDIL+ + K F++ ++ KW+ RK+++ L KL ++ G++ +
Sbjct: 2 SHMDLLDPVDILSKMPKD-FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSA 60
Query: 369 LKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQ 427
LKK+IT D N+ + A + + LA+GL FS + +P LLEK KEKKP V +L +
Sbjct: 61 LKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALRE 120
Query: 428 TLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE-TSSKAAVLKVHKDYV 486
+ A++ +L E + S+ NK P V+S T ++ + T A K+ K
Sbjct: 121 AIDAIYA--STSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLT 178
Query: 487 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMI 539
++ LN+ P VRD++ L + K +G + + + +D ++ K+ E
Sbjct: 179 TSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQ 231
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 8/231 (3%)
Query: 882 DGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 941
D L DI K LE W +R ES+E + K+L + +++ G L L+
Sbjct: 5 DLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKK 63
Query: 942 RLY-DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 1000
+ DSN LV L +A + + + +L+ + K ++ +D
Sbjct: 64 VITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAID 123
Query: 1001 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP----A 1056
A A+ L+ + +L++ + + ++++ LT LLK
Sbjct: 124 AIYASTSLEAQQESIVESLSNKN--PSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181
Query: 1057 SIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIK 1107
+ + VR ++ + +++ G + + L D+ +A I E +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 92.0 bits (228), Expect = 2e-20
Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 9/226 (3%)
Query: 1205 DMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCK-SN 1263
D++ +D + +L + + + LE+L+K L K L+ K SN
Sbjct: 11 DILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSN 70
Query: 1264 TTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 1323
+ + L L L + A+ +P L+EK V +RE I
Sbjct: 71 VVLVAMAGKCLALLAKGLAKR----FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIY 126
Query: 1324 NFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE--ISGQLKSL-QIVASLTA 1380
S I+E L +KN + E + + LK L +
Sbjct: 127 ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN 186
Query: 1381 ERDGEIRKAALNTLATGYKILGED-IWRYVGKLTDAQKSMLDDRFK 1425
E D +R ++ L T K++G+ + + + + + + + +
Sbjct: 187 EPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 7e-16
Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 12/224 (5%)
Query: 639 SLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQS--VEILVRLVCMLPGWSEKNV 696
S +P D +L+ W R E++ L + + L+ ++ L ++ + NV
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI--TKDSNV 71
Query: 697 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGP 754
+ + + LA K C+ + E+ + K + + +
Sbjct: 72 VLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL 131
Query: 755 GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSA 811
E + + + +KNP V SE L++ A+ + L LK L L
Sbjct: 132 EAQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLV-KTLNEPD 189
Query: 812 AATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSALDAEYEK 854
R+++ + LG L K +G + LADV P ++ + EK
Sbjct: 190 PTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEK 233
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 1e-11
Identities = 43/254 (16%), Positives = 80/254 (31%), Gaps = 44/254 (17%)
Query: 12 KKLP--WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIR 69
K+P + D+L K W +R E+ L L D+ E G++ +VS L V +
Sbjct: 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLL------TDHPKLENGEYGALVSALKKVITK 67
Query: 70 IEHCGCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY 129
DSN + A L K Y
Sbjct: 68 --------------------------------DSNVVLVAMAGKCLALLAKGLAKRFSNY 95
Query: 130 AKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAID 189
A ++ K +P V + +++ + + +++ NK
Sbjct: 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETAL 155
Query: 190 VMFQALSEFGAKIIPP---KRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTI 246
+ +AL+ + K + L + + D VR SS L + +G V +
Sbjct: 156 FIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPL 215
Query: 247 LFEKMRDTMKKELE 260
L + +++
Sbjct: 216 L-ADVDPLKMAKIK 228
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.1 bits (207), Expect = 3e-16
Identities = 118/766 (15%), Positives = 233/766 (30%), Gaps = 249/766 (32%)
Query: 787 DF--GVSHLKLKDLI-----DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLAD 839
DF G + KD++ F + D K D
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF--------------------------DCK----D 37
Query: 840 VKPALLSAL-DAEY-----EKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 893
V+ S L E K+ GT+ T+ + +E++ KF
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK---------------QEEMVQKF 82
Query: 894 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMA 953
V+ + ++K + I+ + QP+ ++ R RLY+ N+
Sbjct: 83 ----VEEVLRINYKFLMSPIKTEQR---------QPSMMTRMYIEQRDRLYNDNQ----- 124
Query: 954 TLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKK---H-MRECTLTVLDAWLAAVHLD 1009
+ V ++ K L L L K + T W+A
Sbjct: 125 -VFAKYNV-----SRLQPYLK--LRQALLELRPAKNVLIDGVLGSGKT----WVAL---- 168
Query: 1010 KMVPYVTTALTDAKLGAEGRKDLFD----WLS-----------KQLTGLSGFPDAAHLLK 1054
K+ + D WL+ + L L + +
Sbjct: 169 -------DVCLSYKV-----QCKMDFKIFWLNLKNCNSPETVLEMLQKLL------YQID 210
Query: 1055 PASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALIL------ERIK- 1107
P + +D SS+++ + E+ R K ++ L L+L +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKPYEN----CL-LVLLNVQNAKAWNA 261
Query: 1108 LNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQS 1167
N + ++ + T++ V S + H S + P+ + S+
Sbjct: 262 FNLSCKILL--TTRFKQ-VTDFLSAATTTH-----ISLDHHSMTLTPDEVKSL------- 306
Query: 1168 QALLNVKDSNKED--RE---------RMVVRRFKFEDP-RIEQIQELENDMMKYFREDLH 1215
LL D +D RE ++ + + + + + D + E
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSL 363
Query: 1216 RRLLSTDFKKQVDGLEMLQKALPSIRKDI-IEVLDILLRWFVLQFCKSNTTCLLKVLEFL 1274
L +++K D L + + I +L ++ W + ++ V+ L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAH-----IPTILLSLI--W-----FDVIKSDVMVVVNKL 411
Query: 1275 PELFDTLRDEGYSLTE---SEAAVFLP-CLVEKSGHNIEKVREKMRELTKQIVNFYSATK 1330
YSL E E+ + +P +E E L + IV+ Y+ K
Sbjct: 412 ---------HKYSLVEKQPKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPK 457
Query: 1331 TLPYILEGLRSKNNRTRIECVDLVGFL---IDHHGAEISGQLKSLQIVASLTAERDGEIR 1387
T ++ +D + I HH LK+++ ER R
Sbjct: 458 TFD---------SDDLIPPYLD--QYFYSHIGHH-------LKNIE-----HPERMTLFR 494
Query: 1388 KAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDD--RFKWKVREMEKKKEGKPGEARAA 1445
L+ ++ L + I R+ +A S+L+ + K + + K A
Sbjct: 495 MVFLD-----FRFLEQKI-RHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNA 547
Query: 1446 LRRSVRENGSDIAE-QSGDVSQSVSGPTLMRRN---YGHSELHVER 1487
+ + + ++ + D+ + LM + + + V+R
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRI----ALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 81.4 bits (200), Expect = 3e-15
Identities = 100/756 (13%), Positives = 204/756 (26%), Gaps = 249/756 (32%)
Query: 1193 DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR-KDIIEVLDIL 1251
D + Q D++ F + D K D +M + L II D +
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNF---DCK---DVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 1252 LRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1311
LF TL + E F+ ++ N + +
Sbjct: 62 SGTLR--------------------LFWTLLSKQ----EEMVQKFVEEVLRI---NYKFL 94
Query: 1312 REKMRELTKQ---IVNFYSATKTLPYILEGLRSKNNRTRIECVD-----LVGFLIDH--- 1360
++ +Q + Y + Y + +K N +R++ L+ L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNV 153
Query: 1361 --HGAEISGQLKSLQIVASLTAE--RDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQ 1416
G SG K+ + + +++ +KI W + +
Sbjct: 154 LIDGVLGSG--KT-----WVALDVCLSYKVQCKM------DFKIF----WLNLKNCNSPE 196
Query: 1417 KSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTLMRR 1476
+ EM +K L + N + ++ S ++ + R
Sbjct: 197 TVL----------EMLQK-----------LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 1477 NYGHSELHVERSIMPRALASVSGPTDWNEALDIISFGSPEQSVEGMKVVCHELAQATNDP 1536
S+ + L L
Sbjct: 236 RLLKSKPY------ENCL------------L----------------------------- 248
Query: 1537 EGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYAVQ 1596
V+ V++A K F+ SCK L+ T + K++ +
Sbjct: 249 ---VLLN-VQNA---------KAWNAFNL--------SCK----ILLTT-RFKQVTDFLS 282
Query: 1597 ESTLDSLITELLLWLLDERVPHMDDGSQLL-KALNVLMLKILDNADRTSSFVV-LI-NLL 1653
+T + + L D+ LL K L+ + T+ + +I +
Sbjct: 283 AATTTHISLDHHSMTLTP-----DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 1654 RPLDPSRWPSPASNESFAARNQ-RFSDLVVKCLIKLTKVLQSTIY--------DVD---- 1700
R + W +++ N + + ++ L L ++
Sbjct: 338 RD-GLATW------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 1701 -LDRILQSIHVYLQELGMEEIRRRAGADDKPLRMVKTVLHEL-----VKLRGAAIKGHLS 1754
L I + + + ++ + + + +P + + + VKL H S
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKVKLENEYAL-HRS 448
Query: 1755 MV----------PIDMKPQPI---ILAYIDLNLETLAAARMLTSTGPGGQT--------- 1792
+V D+ P + ++I L + +
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHI---------GHHLKNIEHPERMTLFRMVFLD 499
Query: 1793 -HW-------GDSAANNPTSATNSADAQLKQELAAIFKKIG--DKQTCTIGLYELYRI-T 1841
+ +A N S N+ QLK I ++ I + L +I
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDF-LPKIEE 557
Query: 1842 QLY--PKVDI--FAQLQNASEAFRTYIRDGLAQMEK 1873
L D+ A L EA + Q+++
Sbjct: 558 NLICSKYTDLLRIA-LMAEDEA---IFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 3e-12
Identities = 100/735 (13%), Positives = 204/735 (27%), Gaps = 241/735 (32%)
Query: 281 DKELGQ-ELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWS 339
D E G+ + +D+ +D ++ D D+ +
Sbjct: 8 DFETGEHQYQYKDILS-------VFEDAFVDNFDCKDVQDMPKSILSK-----------E 49
Query: 340 ERKDAVAELTKLASTKRIAPGDFTEVC----RTLKKLITDV---NIAVAVEAIQAIGNLA 392
E + ++ T R+ F + ++K + +V N + I+
Sbjct: 50 EIDHIIMSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 393 RGLRTHFSGSSRFLL---PVLLEKL----KEKKPTVAESLTQ-------TLQAMHKAG-- 436
+ + R L + K + + ++L + + + +G
Sbjct: 106 SMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 437 CLNLVDVVED--VKTSVKNKVPLVRSLTLNWVTF--CIETSSKAAVL-----KVHKDYVP 487
+ +DV V+ + K+ W+ C + +L ++ ++
Sbjct: 165 WV-ALDVCLSYKVQCKMDFKI--------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 488 ICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGD-- 545
+D + ++ S+ A + + + +P E + L +V+ K +
Sbjct: 216 -----RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----NLS 265
Query: 546 ----VATGTSS--ARVQTSGGSVPSVEASESSFVRKSAASMLS---GKRPVSAAPASKKG 596
+ T + + + S++ + S+L RP
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 597 GPVKPS----AKKDGSG------KQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 646
P + S + +DG KLT E SL +E PA+
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------IESSLNVLE-------PAEY- 371
Query: 647 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 706
++ + + +V S I L+ ++ W + V+
Sbjct: 372 --------RKMFDRL--------SV--FPPSAHIPTILLSLI--WFDVIKSDVMVVVN-- 409
Query: 707 NYLAATATKFPKKCVVLC--------LLGISERV---ADIKTRAHAMKCLTTFSEAVGPG 755
K K +V + I + + + H
Sbjct: 410 --------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS------------- 448
Query: 756 FIFERLYKIMK----DHKNPKVLSEGILWMVSAVEDFGVSHLKLKD-----------LID 800
I + Y I K D P L + HLK + +D
Sbjct: 449 -IVDH-YNIPKTFDSDDLIPPYLDQYFYS-------HIGHHLKNIEHPERMTLFRMVFLD 499
Query: 801 F-------CKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE 853
F D+ +A + + L L + K ++ D P L
Sbjct: 500 FRFLEQKIRHDS----TAWNASGSILNTLQQLKFY-----KPYICDNDPK-YERLVNAIL 549
Query: 854 KNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESI 913
F +P + E+ I K+T L +L + D
Sbjct: 550 D--F----LP----KIEENL---------------ICSKYTDLLRIALMAED-------- 576
Query: 914 EAVNKILEEANKRIQ 928
I EEA+K++Q
Sbjct: 577 ---EAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 3e-10
Identities = 61/434 (14%), Positives = 138/434 (31%), Gaps = 134/434 (30%)
Query: 1535 DPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRSCKYVLNTLMQTFQNKRLAYA 1594
D E KD ++S + FD CK V + + + +
Sbjct: 8 DFETGEHQYQYKD---ILSVFEDAFVDNFD----------CKDVQDMPKSILSKEEIDHI 54
Query: 1595 VQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLMLKILDNADRTS-SFVVLINLL 1653
+ S T L W L + ++++ K ++ R + F L++ +
Sbjct: 55 IMSKDAVSG-TLRLFWTL------LSKQEEMVQ-------KFVEEVLRINYKF--LMSPI 98
Query: 1654 RPLDPSRWPSPASNESFAAR------NQRFSDLVV---KCLIKLTKVLQSTIYDVDLDRI 1704
+ R PS + R NQ F+ V + +KL + L R
Sbjct: 99 K--TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-------LRP 149
Query: 1705 LQSIHVYLQELGM---------------EEIRRR---------AGADDKP---LRMVKTV 1737
+++ + G+ +++ + + P L M++ +
Sbjct: 150 AKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 1738 LHEL-------------VKLRGAAIKGHLSMVPIDMKPQP---IILAYIDL-NLETLAA- 1779
L+++ +KLR +I+ L + + KP ++L ++ N + A
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLL--NVQNAKAWNAF 262
Query: 1780 ---ARMLTSTGPGGQTHWGDSAANNPTSATNSADAQLKQELAAIFKK-----IGD--KQT 1829
++L +T T + +A S + + E+ ++ K D ++
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 1830 CT-----IGL--------------YELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQ 1870
T + + ++ +L ++ + +E +R L+
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDR-LSV 380
Query: 1871 MEKNAAAGRTPSSV 1884
+A P+ +
Sbjct: 381 FPPSA---HIPTIL 391
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 2e-09
Identities = 91/559 (16%), Positives = 161/559 (28%), Gaps = 165/559 (29%)
Query: 39 CDSI--TDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSI-----YSFVLM 91
D I + + L W + EM++ +F Y F
Sbjct: 51 IDHIIMSKDAVSGTLRL------------FWT-LLSKQEEMVQ-KFVEEVLRINYKF--- 93
Query: 92 LGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAK-EVCDAIAAKCLTGRPKTVE 150
L + P I D +AK V R +
Sbjct: 94 ---LMSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQVFAKYNVS----------RLQPYL 138
Query: 151 KAQAVFMLWVELE-AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFG------AKII 203
K + + EL A +V +D + + K VA V + V Q +F
Sbjct: 139 KLRQALL---ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV--QCKMDFKIFWLNLKNCN 193
Query: 204 PPKRILKMLPELFDHQDQNVRASSKGL-TLELCRWIGKDPVKTILFEKMRDTMKKELEVE 262
P+ +L+ML +L D N + S ++L + ++ +L K + L V
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCLLV- 249
Query: 263 LVNVSG---------------TARP---TRKIRAEQDKELGQELISEDVGPGPSEE---- 300
L+NV T R T + A + + S + P +
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 301 ----STADVPPEIDEYELVDPVDILTPLEKSGFWEGVK--ATKWSE-RKDAVAELTKL-- 351
D+P E+ + P S E ++ W + +LT +
Sbjct: 310 YLDCRPQDLPREV--------LTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 352 ASTKRIAPGDFTEVCRTLKKLITDVNIAVAV----------EAIQAIGNL--ARGLRTHF 399
+S + P ++ ++ L +I + + + N L
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 400 SGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKN------ 453
S +P + +LK K A+H+ ++VD KT +
Sbjct: 421 PKESTISIPSIYLELKVKLE--------NEYALHR----SIVDHYNIPKTFDSDDLIPPY 468
Query: 454 --------------------KVPLVRSLTLN--WV--------TFCIETSSKAAVL---K 480
++ L R + L+ ++ T + S L K
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 481 VHKDYVPICMECLNDGTPE 499
+K Y+ C ND E
Sbjct: 529 FYKPYI-----CDNDPKYE 542
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 2e-08
Identities = 89/607 (14%), Positives = 176/607 (28%), Gaps = 171/607 (28%)
Query: 621 EDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI 680
+D+ S +S EEI+ + S D V W + +++ VE V L + +
Sbjct: 39 QDMPKSILSKEEIDHIIMS---KDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKF 93
Query: 681 LVRLVCMLPGWSEKNVQ---VQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKT 737
L+ + Q + + IE + L F K V + ++
Sbjct: 94 LMS------PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-----RLQPYLKLRQ 142
Query: 738 RA-----------HAMK-----CLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 781
+ + + +K + I W+
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVA--LDVC-------------LSYKVQCKMDFKIFWL 187
Query: 782 VSAVEDFGVSH---LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA 838
+ + L+ L ++ + ++ IKL +H + +++ L
Sbjct: 188 -----NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHS-IQAELRRLLK 239
Query: 839 DVKP---ALLSALDAEYEK---NPFEG---TVVPKKTVRASESTSSVSSGGSDGLPREDI 889
KP LL L N F ++ T R + T +S+ + + +
Sbjct: 240 S-KPYENCLL-VLLNVQNAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLDHH 294
Query: 890 SGKFTPT-----LVKSLE-------------SP-----------DWKVRLE-----SIEA 915
S TP L+K L+ +P D + + +
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 916 VNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITL---------GAVASAMG 966
+ I+E + ++PA ++F L ++ + ++ L + V + +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 967 P--AVEKSSKG---VLSDI---LKCLGDNKK--HMR--------------ECTLTVLD-- 1000
VEK K + I LK +N+ H + LD
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 1001 -AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFD--WLSKQL-------TGLSGFPDAA 1050
HL + + R D +L +++ +
Sbjct: 473 FYSHIGHHLKNIEH--------PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 1051 HLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI-QGPALALILER--IK 1107
LK + D + A I++ L + I D+ + +AL+ E I
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNA-ILDFLPKIEENLICSKYTDLLR---IALMAEDEAIF 580
Query: 1108 LNGASQV 1114
QV
Sbjct: 581 EEAHKQV 587
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 80.1 bits (197), Expect = 4e-15
Identities = 99/633 (15%), Positives = 198/633 (31%), Gaps = 89/633 (14%)
Query: 484 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--------MRPLERSIEKLDDVRRNKL 535
+ + ++ L + ++R + L+ IA ++G + L +I D+V L
Sbjct: 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLL-AL 68
Query: 536 SEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 595
+E + V V + S+ E + VR A L + S
Sbjct: 69 AEQLGTFTTLVG---GPEYVHCLLPPLESLATVEETVVRDKAVESL--RAISHEHSPSDL 123
Query: 596 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAV-- 653
P K+ G TS+ + R+ S + A+ ++
Sbjct: 124 EAHFVPLVKRLAGGDWFTSRTSAC--------GLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 654 --WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAA 711
R A S L + + ++ + EI+ + S++ V+ +E
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLA---SDEQDSVRLLAVEA---CVN 229
Query: 712 TATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERL---YKIM 765
A P++ + ++ + A + R T +AVGP L ++ +
Sbjct: 230 IAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 289
Query: 766 KDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLL 822
+V + + E+ + + ++ K+ + + ++A ++
Sbjct: 290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVI 348
Query: 823 GALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 882
L +G D + + P L+ L E + V + + + V
Sbjct: 349 MGLSPILGKDN--TIEHLLPLFLAQLKDECPE-------VRLNIISNLDCVNEV------ 393
Query: 883 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 942
+ +S P +V+ E W+VRL IE + + + +L
Sbjct: 394 -IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDE---KLNSLCMAW 449
Query: 943 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAW 1002
L D + A L + G E + ++ +L GD R TL ++
Sbjct: 450 LVDHVYAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVL 507
Query: 1003 LAAVHLD----KMVPYVTTALTD---------AKLGAEGRKDLFDWLSKQLTGLSGFPDA 1049
D M+P V D AK + + L
Sbjct: 508 SEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK----IGPILDNS--------TL 555
Query: 1050 AHLLKPA-SIAMTDKSSDVRKAAEACIVEILRA 1081
+KP D+ DV+ A+ + + A
Sbjct: 556 QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 1e-13
Identities = 75/512 (14%), Positives = 165/512 (32%), Gaps = 52/512 (10%)
Query: 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEM 77
D L +++ ++R + L+ + ++ + R L + + D V + +
Sbjct: 17 DELRNEDVQLRLNSIKKLSTIALAL-GVERTRSELLPFLTDTIYDEDEVLLALAEQLGTF 75
Query: 78 MRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAI 137
Y L+ P + V+DKA+++L A + +
Sbjct: 76 TTLVGGPEYVHCLL--PPLESLATVEETVVRDKAVESLRAISHEHSPSD---LEAHFVPL 130
Query: 138 AAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSE 197
+ G T + + + +N + L E
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGE 190
Query: 198 FGAKIIPP---KRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDT 254
F + I+ M L + +VR + + + + + ++ ++ ++ +R
Sbjct: 191 FAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQA 250
Query: 255 MKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYEL 314
+ + R + A++ EL + + PEI + +L
Sbjct: 251 AEDKSW-----------RVRYMVADKFTELQKAV-----------------GPEITKTDL 282
Query: 315 VDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT 374
V L K E A V E + S +++ +K+L++
Sbjct: 283 VP---AFQNLMKDCEAEVRAAAS-----HKVKEFCENLSADCRENVIMSQILPCIKELVS 334
Query: 375 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK 434
D N V I L+ L + LLP+ L +LK++ P V ++ L +++
Sbjct: 335 DANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392
Query: 435 AGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 492
+ + ++ + ++ VR + ++ + +CM
Sbjct: 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAW 449
Query: 493 LNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI 524
L D +R+AA S L + + G +I
Sbjct: 450 LVDHVYAIREAATSNLKKLVEKFGKEWAHATI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 68.1 bits (166), Expect = 2e-11
Identities = 59/482 (12%), Positives = 156/482 (32%), Gaps = 52/482 (10%)
Query: 629 SLEEIESRLGS------LIPADTVGQLKSAVWKE---RLEAISSLRQQVEAVQNLDQSVE 679
L I LG L+P L ++ E L L V +
Sbjct: 33 KLSTIALALGVERTRSELLPF-----LTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHC 87
Query: 680 ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRA 739
+L L + + + V+ + +E + ++ + + + + +R+A
Sbjct: 88 LLPPLESLA---TVEETVVRDKAVESLRAISH---EHSPSDLEAHFVPLVKRLAGGDWFT 141
Query: 740 HAMKCLTTFSEAVGPG-----FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK 794
FS + ++ + P V + + + ++K
Sbjct: 142 SRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVK 201
Query: 795 LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK 854
++I + + R ++ + + + + A V P L A + + +
Sbjct: 202 -SEIIPMFSN-LASDEQDSVRLLAVEACVNIAQLLPQE--DLEALVMPTLRQAAEDKSWR 257
Query: 855 NPFEGTVVPKKTVR--ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLES 912
VR ++ + + + E P ++ + +VR +
Sbjct: 258 ------------VRYMVADKFTELQKA----VGPEITKTDLVPAFQNLMKDCEAEVRAAA 301
Query: 913 IEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEK 971
V + E + + ++ ++ + D+N+++ A + ++ +G +
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK--DN 359
Query: 972 SSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEG--R 1029
+ + +L L L D +R ++ LD + + ++ + A+ + A+ R
Sbjct: 360 TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVR 419
Query: 1030 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1089
+ +++ L L + D +R+AA + + +++ G+E
Sbjct: 420 LAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHA 479
Query: 1090 NL 1091
+
Sbjct: 480 TI 481
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 3e-11
Identities = 77/461 (16%), Positives = 148/461 (32%), Gaps = 49/461 (10%)
Query: 649 LKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINY 708
L++ + RL +I L A+ E+L L + + E V + +
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI--YDEDEVL-----LALAEQ 71
Query: 709 LAATATKFPKKCVVLCLLGISERVA---DIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 765
L T V CLL E +A + R A++ L S P + ++
Sbjct: 72 LGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLV 131
Query: 766 K--DHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIK 820
K + + S S +K + + C D R A
Sbjct: 132 KRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD-----DTPMVRRAAAS 186
Query: 821 LLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGG 880
LG K + D +++ P + E + V V A + + +
Sbjct: 187 KLGEFAKVLELDN--VKSEIIPMFSNLASDEQDS-------VRLLAVEACVNIAQL---- 233
Query: 881 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 940
LP+ED+ PTL ++ E W+VR + ++ + I +L +
Sbjct: 234 ---LPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKT---DLVPAFQ 287
Query: 941 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTV 998
+ D + A + + ++ +L I + + D +H++ +V
Sbjct: 288 NLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347
Query: 999 LDAWLAAV-----HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1053
+ L+ + ++ ++P L D E R ++ L + + LL
Sbjct: 348 IMG-LSPILGKDNTIEHLLPLFLAQLKD--ECPEVRLNIISNLDCVNEVIGIRQLSQSLL 404
Query: 1054 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDI 1094
D VR A + + G E ++ L +
Sbjct: 405 PAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSL 445
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 3e-08
Identities = 88/640 (13%), Positives = 179/640 (27%), Gaps = 126/640 (19%)
Query: 807 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 866
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVER--TRSELLPFLTDTIYDEDE------------- 63
Query: 867 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 926
V + + + + + + P L + VR +++E++ I E
Sbjct: 64 VLLALAEQLGTF--TTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE---- 117
Query: 927 IQPAGTGELFGGLRGRLYDSNKNLV-MATLITLGAVASAMGPAVEKSSKGVLSDILKCLG 985
P+ F L RL + + + AV+ +
Sbjct: 118 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE---LRQYFRNLCS 174
Query: 986 DNKKHMRECTLTVLDAWLAAV----HLDKMVPYVTTALTD-----------------AKL 1024
D+ +R + L + + +++P + +D L
Sbjct: 175 DDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234
Query: 1025 GAEGRKDLFDWLSKQLTG----------LSGFPDAAHLLKPASIA----------MTDKS 1064
E + L +Q F + + P M D
Sbjct: 235 PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCE 294
Query: 1065 SDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSS 1124
++VR AA + E + E ++ IL IK S ++
Sbjct: 295 AEVRAAASHKVKEFCENLSADCREN-------VIMSQILPCIKEL---------VSDANQ 338
Query: 1125 KVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERM 1184
V + ++ + I + + + V+ + N+ N+
Sbjct: 339 HVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE------ 392
Query: 1185 VVRRFKFEDPRIEQIQELENDMMKYFRE-------DLHRRLLSTDFKKQVDGL--EMLQK 1235
V+ + + I EL D R L +L F ++++ L L
Sbjct: 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 452
Query: 1236 ALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAV 1295
+ +IR+ L L+ F ++ + +P++ D Y +
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHA---------TIIPKVLAMSGDPNYLHRMT-TLF 502
Query: 1296 FLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVG 1355
+ L E G TK + LP +L R +
Sbjct: 503 CINVLSEVCG---------QDITTKHM---------LPTVLRMAGDPVANVRFNVAKSLQ 544
Query: 1356 FLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLA 1395
+ I+ LT ++D +++ A L
Sbjct: 545 KIGPILDNSTLQSEV-KPILEKLTQDQDVDVKYFAQEALT 583
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 4e-08
Identities = 98/634 (15%), Positives = 206/634 (32%), Gaps = 105/634 (16%)
Query: 316 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKL 372
D D L P+ + ++ R +++ +L+ +A A G +E+ L
Sbjct: 4 DGDDSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIAL----ALGVERTRSELLPFLTDT 57
Query: 373 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAM 432
I D + V + + +G + LLP L ++ V + ++L+A+
Sbjct: 58 IYDEDE-VLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 114
Query: 433 HKAGCLNLVDVVEDVKTSV----KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 488
+ + D+ V R+ + C S A V +
Sbjct: 115 --SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQY 168
Query: 489 CMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSI-----EKLDDVRRNKLSEMIAGSG 543
+D TP VR AA S L AK + + ++ I D ++ + + +
Sbjct: 169 FRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASD-EQDSVRLLAVEAC 227
Query: 544 GDVATGTSSARVQTSGGSVPSVEA---SESSFVRKSAASMLSGKRPVSAAPASKKGGPVK 600
++A ++ +P++ +S VR A +
Sbjct: 228 VNIAQLLPQEDLEAL--VMPTLRQAAEDKSWRVRYMVADKFT------------------ 267
Query: 601 PSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEA 660
+L +A E++ ++ +L +K + R A
Sbjct: 268 --------------ELQKA----VGPEITKTDLVPAFQNL--------MKDCEAEVRAAA 301
Query: 661 ISSLRQQVEAVQNLDQSVEILVRLV-CMLPGWSEKNVQVQQQVIEVINYLAATATK--FP 717
+++ E + + I+ +++ C+ S+ N V+ + VI L+ K
Sbjct: 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTI 361
Query: 718 KKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHKNPKV 773
+ + L L + + ++ R + + L +E +G + + ++ +D +V
Sbjct: 362 EHLLPLFLAQLKDECPEV--RLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA-KWRV 418
Query: 774 LSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI 833
I +M GV + L C L A R A L L + G +
Sbjct: 419 RLAIIEYMPLLAGQLGVEFFD-EKLNSLC-MAWLVDHVYAIREAATSNLKKLVEKFGKE- 475
Query: 834 KGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKF 893
++ + A P R +T + S+ ++ +
Sbjct: 476 -----WAHATIIPKVLAMSGD--------PNYLHR--MTTLFCINVLSEVCGQDITTKHM 520
Query: 894 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRI 927
PT+++ P VR +++ KI +
Sbjct: 521 LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 3e-07
Identities = 74/525 (14%), Positives = 165/525 (31%), Gaps = 52/525 (9%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDL---TFVWIRIE 71
P E + VR++A L A+ + F +V L + R
Sbjct: 91 PLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH-----FVPLVKRLAGGDWFTSRTS 145
Query: 72 HCG-CEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKAADADA--GR 128
CG + R +S L F+ +D V+ A L + K + D
Sbjct: 146 ACGLFSVCYPRVSSAVKAELR--QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSE 203
Query: 129 YAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAI 188
+ + + + R VE + L + + + + + +A ++K +
Sbjct: 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVA 263
Query: 189 DVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILF 248
D + G +I ++ L + VRA++ E C + D + ++
Sbjct: 264 DKFTELQKAVGPEITK-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIM 322
Query: 249 EKMRDTMKKELEVELVNVSGTARPTRKIRA-------EQDKELGQELISEDVGPGPSEES 301
++ +K+ + + +++ LG++ E + P
Sbjct: 323 SQILPCIKE----------LVSDANQHVKSALASVIMGLSPILGKDNTIEHLLP-LFLAQ 371
Query: 302 TADVPPEI------DEYELVDPVDILTPLEKS---GFWEGVKATKWSERKDAVAELTKLA 352
D PE+ + + + + I L +S E + KW R + + LA
Sbjct: 372 LKDECPEVRLNIISNLDCVNEVIGI-RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA 430
Query: 353 STKRIAPGDFTE-VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 411
++ F E + + D A+ A + L ++ ++P +L
Sbjct: 431 --GQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA--HATIIPKVL 486
Query: 412 EKLKEKKPTVAESLTQTLQAMHKAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVTFC 469
+ + + + + ++ ++ V + V VR +
Sbjct: 487 AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKI 546
Query: 470 IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514
+ + + PI + D +V+ A L ++ +
Sbjct: 547 GPILDNSTL---QSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 4e-07
Identities = 68/474 (14%), Positives = 150/474 (31%), Gaps = 71/474 (14%)
Query: 1008 LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDV 1067
+++P++T + D E L + L T + G LL P T + + V
Sbjct: 47 RSELLPFLTDTIYDED---EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVV 103
Query: 1068 RKAAEACIVEILRAGGQETIEKNL------------KDIQGPALALILERI-KLNGASQV 1114
R A + I +E + + A L +++ A +
Sbjct: 104 RDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKA 163
Query: 1115 SMGPT-----SKSSSKVPKSASNGVSK----HGNRAISSRVIP--TKGARPESIMSVQDF 1163
+ S + V ++A++ + + + S +IP + A E SV+
Sbjct: 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQD-SVRLL 222
Query: 1164 AVQSQALLNVKDSNKEDRERMV--VRRFKFEDP----RIEQIQELENDMMKYFREDLHRR 1217
AV++ + ++ ++ +R+ ED R + + K ++ +
Sbjct: 223 AVEACVNIAQLLPQEDLEALVMPTLRQA-AEDKSWRVRYMVADKFTE-LQKAVGPEITKT 280
Query: 1218 LLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPEL 1277
L F +++ +R + ++ + + + LP +
Sbjct: 281 DLVPAF------QNLMKDCEAEVRAAASHKVKEFCENLS-----ADCRENVIMSQILPCI 329
Query: 1278 FDTLRDEGYSLTESEAAVF----------------LPCLVEKSGHNIEKVREKMRELTKQ 1321
+ + D + + A+V LP + + +VR +
Sbjct: 330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389
Query: 1322 IVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVAS 1377
+ + LP I+E R R+ ++ + L G E K + +
Sbjct: 390 VNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF-DEKLNSLCMA 448
Query: 1378 LTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREM 1431
+ IR+AA + L + G++ + +M D + R
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDP-NYLHRMT 499
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-05
Identities = 92/596 (15%), Positives = 186/596 (31%), Gaps = 105/596 (17%)
Query: 895 PTLVKSLESPDWKVRLESIEAVNKIL-----EEANKRIQPAGTGELFGGLRGRLYDSNKN 949
L+ L + D ++RL SI+ ++ I E + P L +YD ++
Sbjct: 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPF--------LTDTIYDEDEV 64
Query: 950 LVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA---WLAAV 1006
L+ LG + +G + +L + + +R+ + L A +
Sbjct: 65 LLAL-AEQLGTFTTLVGG--PEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS 121
Query: 1007 HLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIA------- 1059
L+ + L DW + + + F + A A
Sbjct: 122 DLEAHFVPLVKRLAGG-----------DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFR 170
Query: 1060 --MTDKSSDVRKAAEACIVEILRAGGQETIE--------KNLKDIQGP---ALALILERI 1106
+D + VR+AA + + E + + ++ D Q I
Sbjct: 171 NLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNI 230
Query: 1107 KLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQ 1166
A + + A+ S ++ + + A I D
Sbjct: 231 ----AQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK-TDLVPA 285
Query: 1167 SQALLNVKDSNKEDRERM---------VVRRFKFEDPRIEQI----QELENDMMKYFRED 1213
Q L+ KD E R + E+ + QI +EL +D ++ +
Sbjct: 286 FQNLM--KDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSA 343
Query: 1214 LHRRL--LSTDFKKQV---DGLEMLQKAL----PSIRKDIIEVLDILLRWF-VLQFCKSN 1263
L + LS K L + L P +R +II LD + + Q +S
Sbjct: 344 LASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSL 403
Query: 1264 TTCLLK------------VLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKV 1311
+++ ++E++P L L E + + ++ +
Sbjct: 404 LPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF------DEKLNSLCMAWLVDHVYAI 457
Query: 1312 REKMRELTKQIVNFYSATKT----LPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISG 1367
RE K++V + +P +L N R+ + + L + G +I+
Sbjct: 458 REAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT 517
Query: 1368 QLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDR 1423
+ L V + + +R +L IL + ++ + + D+
Sbjct: 518 K-HMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQS--EVKPILEKLTQDQ 570
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 1e-11
Identities = 41/220 (18%), Positives = 90/220 (40%), Gaps = 22/220 (10%)
Query: 338 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLR 396
W+ K+A++ + +A T+ + + + L L+ I + E +A G +A+
Sbjct: 46 WTVVKNAISIIMVIAKTR---EDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102
Query: 397 THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVP 456
++PVL + +++ L+ + KA + + +V D + + +K
Sbjct: 103 ELVKS----MIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNR 158
Query: 457 LVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516
+ LN++ E S K ++P + L+DG VR +A L +A
Sbjct: 159 EDKLTALNFIEAMGENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLND 213
Query: 517 --MRPLERSIEKLDD----VRR---NKLSEMIAGSGGDVA 547
+ + + +E+L+D V + +S ++ G +
Sbjct: 214 KLRKVVIKRLEELNDTSSLVNKTVKEGISRLLLLEGHSSS 253
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 16/187 (8%)
Query: 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMAT 954
L++ L+ W V +I + I + +P + L L S +
Sbjct: 35 KKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQE 89
Query: 955 LITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPY 1014
+ M + K ++ + + + L+ +A + M
Sbjct: 90 IAKAFG---QMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEE-IAKANPMLMASI 145
Query: 1015 V---TTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAA 1071
V + L+ E + +++ G + F L + D VR +A
Sbjct: 146 VRDFMSMLSSKN--REDKLTALNFIEAM--GENSFKYVNPFLPRIINLLHDGDEIVRASA 201
Query: 1072 EACIVEI 1078
+V +
Sbjct: 202 VEALVHL 208
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 63.2 bits (152), Expect = 1e-09
Identities = 139/1073 (12%), Positives = 306/1073 (28%), Gaps = 96/1073 (8%)
Query: 364 EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAE 423
+V + + KL+ D N V A++ +G L ++ + ++ L + K + +
Sbjct: 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQLRD 104
Query: 424 SLTQTLQAMHKA------GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE----TS 473
+ L+ + G +V + + + + + +++ I +
Sbjct: 105 ISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR 164
Query: 474 SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG-------MRPLERSIEK 526
++ H + + L VR L + S G + L + K
Sbjct: 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSK 224
Query: 527 LDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 586
D + + + A ++ V + +R+
Sbjct: 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284
Query: 587 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTV 646
+ K + + + ++ E + + + GS
Sbjct: 285 RCPKEVYPHVSTIINICLK--YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD- 341
Query: 647 GQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG-WSEKNVQVQQQVIEV 705
WK R A L V + E + L + E+ V+ V
Sbjct: 342 --DDDMSWKVRRAAAKCLDAVVSTRHEMLP--EFYKTVSPALISRFKEREENVKADVFHA 397
Query: 706 INYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIM 765
++ + + D LT V I + L+K M
Sbjct: 398 Y------------LSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPN--IVKALHKQM 443
Query: 766 KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAAT--RNATIKLLG 823
K+ K+ K + V + + ++ L ++++ + + L
Sbjct: 444 KE-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLY 502
Query: 824 ALHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 882
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 503 VILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDA- 561
Query: 883 GLPREDISGKFTPTLVKSLESPD--WKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 940
+K L++ D +V+ +I + +I+ +
Sbjct: 562 ----TPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSD-LPNTLQIFL 616
Query: 941 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLD 1000
RL + L +TL A S + + + + L N++ ++ TL+ LD
Sbjct: 617 ERLKNEITRLTTVKALTLIA-GSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 675
Query: 1001 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1060
+ L A + D L ++ H+ + A +
Sbjct: 676 ILIKNYS--------------DSLTAAMIDAVLDELPPLIS-----ESDMHVSQMAISFL 716
Query: 1061 TDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTS 1120
T + + IL L+ A+ + + + G + +
Sbjct: 717 TTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLL 776
Query: 1121 KSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKED 1180
+ + S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 777 RMLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTD 832
Query: 1181 RERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSI 1240
R++ E + E+ A ++
Sbjct: 833 SIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSS------------PSEEVKSAASYAL 880
Query: 1241 RKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCL 1300
+ L L + + + L L L + + + L
Sbjct: 881 GSISVGNLPEYLPFVLQEITSQPKRQYL----LLHSLKEIISSASVVGLKPYVENIWALL 936
Query: 1301 VEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDH 1360
++ E R + E ++ T LP + L S ++ R V V F I
Sbjct: 937 LKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAVKFTISD 995
Query: 1361 HGAEISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1412
H I LK+ + + D +R+ AL T + I + +
Sbjct: 996 HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1048
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 45.5 bits (106), Expect = 3e-04
Identities = 53/482 (10%), Positives = 141/482 (29%), Gaps = 56/482 (11%)
Query: 86 YSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCL--T 143
Y L + + AD + V+++A+ + + + G +
Sbjct: 564 YIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEI 623
Query: 144 GRPKTVEKAQAVFMLWVELEAVDVFLDVME---KAIKNKVAKAVVPAIDVMFQALSEFGA 200
R TV+ + ++++ V + + ++ + + + + +
Sbjct: 624 TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSD 683
Query: 201 KIIPP--KRILKMLPELFDHQDQNVRASSKGLTLELCRWIGK------DPVKTILFEKMR 252
+ +L LP L D +V + L + + L +R
Sbjct: 684 SLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVR 743
Query: 253 DTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPS---EESTADVPPEI 309
+ + + + A +L + L + ++S + +
Sbjct: 744 SPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCV 803
Query: 310 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTL 369
P + + + F + VK ++ ++ +A L+ I E+ +
Sbjct: 804 AALTRACPKEGPAVVGQ--FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVI 861
Query: 370 KKLITDVNIAVAVEAIQAIGNLARG----------------------------------L 395
+ + + V A A+G+++ G
Sbjct: 862 LEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSAS 921
Query: 396 RTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKV 455
+ +LL+ + + + + L + ++ ++ +K + +
Sbjct: 922 VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKL---TLIDPETLLPRLKGYLISGS 978
Query: 456 PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 515
RS + V F I + + + K+ + ++ L D VR A + A +
Sbjct: 979 SYARSSVVTAVKFTISDHPQP-IDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1037
Query: 516 GM 517
Sbjct: 1038 PS 1039
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 62.1 bits (150), Expect = 2e-09
Identities = 88/726 (12%), Positives = 208/726 (28%), Gaps = 111/726 (15%)
Query: 355 KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLAR-GLRTHFSGSSRFLLPVLLEK 413
+ G + I D + + I +A G ++ LLP L
Sbjct: 81 QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPD----LLPKLCSL 136
Query: 414 LKEKKP-----------TVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLT 462
L + + E + L + LN++ + K+ P +RS
Sbjct: 137 LDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM--IPKFLQFFKHSSPKIRSHA 194
Query: 463 LNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG--MRP- 519
+ V I + ++A ++ ++ D PEVR L + + + P
Sbjct: 195 VACVNQFIISRTQA-LMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 253
Query: 520 --------LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 571
L+R+ ++ ++V + +E
Sbjct: 254 MHNIVEYMLQRTQDQDENVALEACEFWLT--------------------------LAEQP 287
Query: 572 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMS-- 629
+ L PV + + + D S+ +
Sbjct: 288 ICKDVLVRHLPKLIPVLVNGMKYSDIDIIL---------LKGDVEGGSGGDDTISDWNLR 338
Query: 630 ------LEEIESRLGSLIPADTVGQLK----SAVWKERLEAISSLRQQVEA-----VQNL 674
L+ + + + + LK W + I L E + L
Sbjct: 339 KCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL 398
Query: 675 DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT-ATKFPKKCVVLCLLGISERVA 733
+ + L++ + S+K V+ ++ A ++ P + + + +R+
Sbjct: 399 PELIPHLIQCL------SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 452
Query: 734 D--IKTRAHAMKCLTTFSEAVGPGF------IFERLYKIMK--DHKNPKVLSEGILWMVS 783
D + + A T E I + L HKN +L + I +
Sbjct: 453 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512
Query: 784 AVEDFGVSHLKLKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKP 842
+V ++ L+ + ++ L ++ + + V
Sbjct: 513 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 572
Query: 843 ALLSAL------DAEYEKNPFEGTVVPKKTVRASEST-SSVSSGGSDGLPREDISGKFTP 895
++ + P + K + + S ++ G + +
Sbjct: 573 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 632
Query: 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 955
+ + ++ +VR S + + + + ++P + L L ++
Sbjct: 633 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IADFMPILGTNLNPEFISVCNNAT 691
Query: 956 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKH--MRECTLTVLDAWLAAVHLDKMVP 1013
+G ++ MG ++ VL +++ + + E T + L V ++ P
Sbjct: 692 WAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITI-GRLGYVCPQEVAP 750
Query: 1014 YVTTAL 1019
+ +
Sbjct: 751 MLQQFI 756
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 9e-06
Identities = 56/436 (12%), Positives = 122/436 (27%), Gaps = 48/436 (11%)
Query: 616 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 675
L + ED S + ++ L +IP + K + K R A++ + Q + +
Sbjct: 152 LQKICEDSAEILDS-DVLDRPLNIMIPK-FLQFFKHSSPKIRSHAVACVNQFIISRTQAL 209
Query: 676 QSV--EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK----KCVVLCLLGIS 729
+ L + ++ +V++ V + L V L
Sbjct: 210 MLHIDSFIENLFALA---GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQ 266
Query: 730 ERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 789
+ D A + T +E + + K + PK++ + M + D
Sbjct: 267 D--QDENVALEACEFWLTLAE--------QPICKDVLVRHLPKLIPVLVNGMKYSDID-- 314
Query: 790 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALD 849
+ LK D + R + L L ++ + + LL +
Sbjct: 315 IILLKGDVEGGSGGDDTISDWN--LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHE 372
Query: 850 AEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVR 909
+++ G G+ + P L++ L VR
Sbjct: 373 -------------WVVKESGILVLGAIAEGCMQGM--IPYLPELIPHLIQCLSDKKALVR 417
Query: 910 LESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAV 969
+ +++ + L L R+ DSNK + A + +
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL 477
Query: 970 EKSSKGVLSDILKCLGDNKKHMRECTLTVL--------DAWLAAVHLDKMVPYVTTALTD 1021
+L ++ + + ++ ++P +
Sbjct: 478 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNM 537
Query: 1022 AKLGAEGRKDLFDWLS 1037
K + L + LS
Sbjct: 538 LKDEDKDLFPLLECLS 553
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 56.7 bits (136), Expect = 9e-08
Identities = 48/423 (11%), Positives = 132/423 (31%), Gaps = 42/423 (9%)
Query: 631 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQV-EAVQNL-------DQSVEILV 682
++ R + + + Q+K+ + + + + + E++
Sbjct: 78 QQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMK 137
Query: 683 RLVCMLPGWSEKNVQVQQQVIEVINYLAATATKF-------PKKCVVLCLLGISERVADI 735
+V +E+ V++ + + Y+ +A ++ + G
Sbjct: 138 IMVDNTG--AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK 195
Query: 736 KTRAHAMKCLTTFSEAVGPGFIFERLYKIM-------KDHKNPKVLSEGILWMVSAVEDF 788
R A+ L + E + ++ +V + + + +
Sbjct: 196 AVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255
Query: 789 GVSHLK--LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLS 846
+ +K ++ + ++S + T++ + + DI LA + L
Sbjct: 256 -YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE-IDIAYELAQFPQSPLQ 313
Query: 847 ALDAEYEKNPFEGTVVPKKTVRASE----STSSVSSGGSDGL------PREDISGKFTPT 896
+ + + R +E +VS L I
Sbjct: 314 SYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEF 373
Query: 897 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 956
+ +++ + +W+ R ++ A I++ +K + + + + D + + T
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAW 433
Query: 957 TLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRE--CTLTVLDAWLAAVHLDKMV 1012
+G +A ++ +++ GV+ L L D+ K T+ L LA +
Sbjct: 434 CIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIY 493
Query: 1013 PYV 1015
+
Sbjct: 494 NFY 496
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 6e-05
Identities = 35/206 (16%), Positives = 67/206 (32%), Gaps = 21/206 (10%)
Query: 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLA 392
+ R + +E+ + I L K I D A A
Sbjct: 23 LSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTAANAMQAVAHIANQ 82
Query: 393 RGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 452
L L+P + K + ++TL ++ +N ++K
Sbjct: 83 SNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISI--VNAVNP--------VAIK 132
Query: 453 NKVP-LVRSL--TLNWVTFC--------IETSSKAAVLKVHKDYVPICMECLNDGTPEVR 501
+P L ++ T W + ++K V + +P+ E + D EV+
Sbjct: 133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVK 192
Query: 502 DAAFSVLAAIAKSVGMRPLERSIEKL 527
AA + + ++V + +ER I L
Sbjct: 193 AAATAAMTKATETVDNKDIERFIPSL 218
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 9e-04
Identities = 36/270 (13%), Positives = 89/270 (32%), Gaps = 24/270 (8%)
Query: 722 VLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWM 781
++ ++ + + D + R A++ L I Y+ M+ + P + I
Sbjct: 218 IMQVVCEATQCPDTRVRVAALQNLVK---------IMSLYYQYMETYMGPAL--FAITIE 266
Query: 782 VSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVK 841
+ V+ ++ + C + + A+ + KF +L +
Sbjct: 267 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326
Query: 842 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL 901
L+ D + + + +A+ + + +DI P + + +
Sbjct: 327 TQTLTKQDENDDDDDWN-------PCKAAGVCLMLLAT----CCEDDIVPHVLPFIKEHI 375
Query: 902 ESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAV 961
++PDW+ R ++ A ILE + L + D + + T+G +
Sbjct: 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRI 435
Query: 962 ASAMGPAVEKSS--KGVLSDILKCLGDNKK 989
+ A +L +++ L +
Sbjct: 436 CELLPEAAINDVYLAPLLQCLIEGLSAEPR 465
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2052 | |||
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 100.0 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 100.0 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 100.0 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.96 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.96 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.96 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.94 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 99.93 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.92 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.92 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.92 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.92 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.91 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 99.91 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.9 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 99.89 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 99.89 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.88 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.43 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.37 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.25 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.15 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.14 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.07 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 99.04 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.04 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 99.03 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 99.03 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 99.02 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 98.99 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.95 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.95 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.93 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.9 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 98.88 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 98.81 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.79 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 98.79 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 98.67 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.67 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 98.62 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.56 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 98.55 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.55 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 98.53 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.53 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.53 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.5 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 98.49 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.47 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.47 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 98.45 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 98.44 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 98.42 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.4 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 98.38 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.37 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 98.35 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 98.32 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 98.27 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 98.16 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 98.13 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 98.1 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 98.1 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 98.01 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.92 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.87 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 97.85 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 97.84 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 97.8 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 97.72 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.5 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 97.42 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 97.27 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 96.97 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 96.94 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 96.84 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 96.83 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 96.7 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 96.65 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 96.61 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 96.49 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 96.47 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.43 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 96.07 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 96.07 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.85 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 95.72 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 95.68 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 95.44 | |
| 1vsy_5 | 997 | Proteasome activator BLM10; 20S proteasome BLM10, | 95.31 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 95.15 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 94.81 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.6 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 93.89 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 93.67 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 93.67 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 93.44 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 93.29 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 93.28 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 93.04 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 92.75 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 92.63 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 92.46 | |
| 1juq_A | 171 | ADP-ribosylation factor binding protein GGA3; prot | 92.04 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 91.92 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 91.09 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 90.27 | |
| 1elk_A | 157 | Target of MYB1; superhelix of helices, endocytosis | 88.98 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 88.7 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 87.96 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 87.62 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 87.28 | |
| 3ldz_A | 140 | STAM-1, signal transducing adapter molecule 1; ubi | 85.93 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 85.47 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 85.45 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 84.77 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 82.68 | |
| 1dvp_A | 220 | HRS, hepatocyte growth factor-regulated tyrosine k | 82.62 | |
| 3g2s_A | 149 | C-terminal fragment of sortilin-related receptor; | 82.55 | |
| 1mhq_A | 148 | ADP-ribosylation factor binding protein GGA2; supe | 81.18 |
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-55 Score=509.77 Aligned_cols=257 Identities=28% Similarity=0.572 Sum_probs=247.5
Q ss_pred hhccccCCCchHHHhh----hhhccccccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCcChhh
Q 000146 1168 QALLNVKDSNKEDRER----MVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKD 1243 (2052)
Q Consensus 1168 ~~~~~~~~~~k~~R~~----~~~~k~~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~ 1243 (2052)
+|++. .++.|++|.+ +++++|+|++||+|++++|++||.++++++++.+|||+||++|++|+++|.+.+++++++
T Consensus 2 ~~~l~-~~~~K~~R~~~e~~~k~~~w~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~ 80 (266)
T 2of3_A 2 ELLLS-DNEDKKQRIKEEKQLKLVKWNFQAPTDEHISQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRS 80 (266)
T ss_dssp CCSBC-CSSHHHHHHHHHHTTCSCCSCCSSCCHHHHHHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCcee-cCccHHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHH
Confidence 34444 3788999974 567899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCCChHHHHHHHHHHHHHHh
Q 000146 1244 IIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIV 1323 (2052)
Q Consensus 1244 ~i~~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~ 1323 (2052)
+++++|++|+|+++||+|+|++|+.++||+|..+|..|.+.+|+|++||+.+|+|+|++|+||+||.||+.++++++.++
T Consensus 81 ~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~ 160 (266)
T 2of3_A 81 LLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLS 160 (266)
T ss_dssp HHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchH---HHHHHHhcCCChHHHHHHHHHHHHHHHH
Q 000146 1324 NFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL---QIVASLTAERDGEIRKAALNTLATGYKI 1400 (2052)
Q Consensus 1324 ~v~p~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~K~l---~~ia~~i~drd~~VR~AAl~~l~~~y~~ 1400 (2052)
.+||++++|+|+++|++|||+|+|+||+++|+++|++||+. +.|++ +.|+++++|+|++||+||+||++++|.+
T Consensus 161 ~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 161 DVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp HHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999996 67889 9999999999999999999999999999
Q ss_pred hChHHHHHhhcCCHHHHHHHHHHHHhhh
Q 000146 1401 LGEDIWRYVGKLTDAQKSMLDDRFKWKV 1428 (2052)
Q Consensus 1401 ~G~~v~~~~g~ls~~~~s~leer~kr~~ 1428 (2052)
+||+||+++|+|++++++||+|||||++
T Consensus 238 ~Gd~v~k~lg~L~~~~~~~l~er~~r~~ 265 (266)
T 2of3_A 238 EGDQMWKAAGRMADKDKSLVEERIKRTG 265 (266)
T ss_dssp HTTHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhcCCHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999974
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=339.31 Aligned_cols=231 Identities=24% Similarity=0.435 Sum_probs=220.2
Q ss_pred CCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHH-Hh-cCCCCC--CCChHHHHHHHHHHh-cCcCHHHHHH
Q 000146 309 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTK-LA-STKRIA--PGDFTEVCRTLKKLI-TDVNIAVAVE 383 (2052)
Q Consensus 309 iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~-L~-~~~ki~--~~dy~~l~~~L~k~l-~D~N~~V~~~ 383 (2052)
.|+||+++|+||++||| .+|++++.|+||++|++|++.|.. ++ +++++. .++|.++++.|++.+ +|+|+.|+..
T Consensus 2 ~~~~d~~~~~~i~~kl~-~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~ 80 (249)
T 2qk1_A 2 SHMASMLPEETILDKLP-KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVAL 80 (249)
T ss_dssp CCSCCCCCCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred CchHhhcChhhhhhhCC-hhHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHH
Confidence 47999999999999999 599999999999999999999999 87 688988 689999999999999 6999999999
Q ss_pred HHHHHHHHHHHhh-hcch-hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHhhcCC
Q 000146 384 AIQAIGNLARGLR-THFS-GSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC------LNLVDVVEDVKTSVKNKV 455 (2052)
Q Consensus 384 A~~~l~~La~~L~-~~f~-~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~------~~l~~ll~~l~~~L~~Kn 455 (2052)
||+||+.||++++ +.|. +|+..++|.|+++++|+|+.|++++..|+++++.+ + .+++.+++.|..+|+|||
T Consensus 81 A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~-~~~~~~~~~l~~ll~~l~~~l~~k~ 159 (249)
T 2qk1_A 81 AAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY-YDPLASSGRNEDMLKDILEHMKHKT 159 (249)
T ss_dssp HHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH-SCTTCTTCTTHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-ccccccCCcHHHHHHHHHHHHcCCC
Confidence 9999999999999 9999 99999999999999999999999999999999998 5 339999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCh--hHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHH
Q 000146 456 PLVRSLTLNWVTFCIETSSK--AAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRR 532 (2052)
Q Consensus 456 p~vR~~~l~~L~~~l~~~~~--~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~ 532 (2052)
|++|.+++.||.+++..++. ..+.+++ +.++|.+.++++|++++||++|.+|++++++++|++.+.+|++.||+.++
T Consensus 160 ~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 160 PQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKR 239 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHH
Confidence 99999999999999998875 6678899 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 000146 533 NKLSEMIAG 541 (2052)
Q Consensus 533 kkI~e~~~~ 541 (2052)
+||++++++
T Consensus 240 ~ki~~~~~~ 248 (249)
T 2qk1_A 240 KKIEETVKT 248 (249)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999999875
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=341.95 Aligned_cols=235 Identities=26% Similarity=0.413 Sum_probs=181.2
Q ss_pred CChHHHhHhhhcCCChhhhhcCCchhHHHHHHHHHHHHhhccCCC--CchhhhhhcccccccccchhhHhhhhccccccc
Q 000146 1 MSEEEKLLKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDP--KDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMM 78 (2052)
Q Consensus 1 m~~~~~~~~~~~~lpl~~rl~hk~WK~R~~~yeel~~~f~~~~~~--~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 78 (2052)
|++||+ .||++|||+|||.||+||.|++|||++.++|+..... +++.+..| |
T Consensus 1 m~~~e~--~d~sklpl~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~-------------~----------- 54 (278)
T 4ffb_C 1 MSGEEE--VDYTTLPLEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIY-------------W----------- 54 (278)
T ss_dssp ------------CCCHHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCT-------------T-----------
T ss_pred CCCcch--hhhhcCCHHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHH-------------H-----------
Confidence 887554 5999999999999999999999999999999864332 23333333 1
Q ss_pred ccccccchhhhhhchhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhh------hhhhHHHHHHHHHhhcC-CChhHHHH
Q 000146 79 RCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKAADADA------GRYAKEVCDAIAAKCLT-GRPKTVEK 151 (2052)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~------~~~~~~vi~~LieK~L~-~r~~tk~~ 151 (2052)
...++|++++.|+|+.||++|++++..|++.++... ..++..+++.|++|||+ +|+++|+.
T Consensus 55 ------------~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~ 122 (278)
T 4ffb_C 55 ------------RDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQ 122 (278)
T ss_dssp ------------SCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHH
T ss_pred ------------HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 127889999999999999999999999998776432 24467889999999998 79999999
Q ss_pred HHHHHHHHHhhhh-hhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcChHH----HHhhhhhhhCCCChhHHHH
Q 000146 152 AQAVFMLWVELEA-VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKR----ILKMLPELFDHQDQNVRAS 226 (2052)
Q Consensus 152 A~~~~l~~~e~~~-~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~----il~~l~~ll~~~dk~VR~~ 226 (2052)
|+++++.+++... .+.+++.|.+++++||||++.+|+.||.+++.+||.+++++++ +++.++++|+|+|++||++
T Consensus 123 a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~a 202 (278)
T 4ffb_C 123 SMSCILSLCGLDTSITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQ 202 (278)
T ss_dssp HHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHH
Confidence 9999999999865 4778899999999999999999999999999999999988765 6678889999999999999
Q ss_pred HHHHHHHHHHhhCCch--hhHHHHhhChHHHHHHHHHHHHhccCCCCCC
Q 000146 227 SKGLTLELCRWIGKDP--VKTILFEKMRDTMKKELEVELVNVSGTARPT 273 (2052)
Q Consensus 227 a~~l~vely~~lG~~~--l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~ 273 (2052)
|+.+++++|+|+|+.. +...++++|||+|+++|+++|+++.+.++|+
T Consensus 203 A~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~~~~~ 251 (278)
T 4ffb_C 203 TMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDEPSSS 251 (278)
T ss_dssp HHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC-----
T ss_pred HHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999642 2334458999999999999999998765443
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-29 Score=294.08 Aligned_cols=230 Identities=29% Similarity=0.469 Sum_probs=217.8
Q ss_pred CCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHH
Q 000146 310 DEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQA 387 (2052)
Q Consensus 310 D~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~ 387 (2052)
||||+++++||+++++ ++|++.+.|++|++|++|++.|..++. ++++...+|.+++..|.+++. |.|..|+..|++|
T Consensus 2 d~~d~~~~~di~~~l~-~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~ 80 (242)
T 2qk2_A 2 SHMDLLDPVDILSKMP-KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKC 80 (242)
T ss_dssp HHHHTTSCBCCGGGSC-TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CHHHhCCcccccccCC-HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 7899999999999999 689999999999999999999999885 478878889999999999995 9999999999999
Q ss_pred HHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 000146 388 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 467 (2052)
Q Consensus 388 l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~ 467 (2052)
++.|+.++++.|.+|+..++|.|+++++|+++.||+++..||.+++.. .+++.+++.|..+++++||++|.+++.||.
T Consensus 81 l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~--~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~ 158 (242)
T 2qk2_A 81 LALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS--TSLEAQQESIVESLSNKNPSVKSETALFIA 158 (242)
T ss_dssp HHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999985 789999999999999999999999999999
Q ss_pred HHHHhcChh-HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcC
Q 000146 468 FCIETSSKA-AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGS 542 (2052)
Q Consensus 468 ~~l~~~~~~-~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~ 542 (2052)
+++..+.+. .+..+++.++|.+.++++|++++||++|.+|++.++..+|++.+.++++.|++.++++|++++++.
T Consensus 159 ~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a 234 (242)
T 2qk2_A 159 RALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKA 234 (242)
T ss_dssp HHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999887544 355788999999999999999999999999999999999998899999999999999999999875
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-24 Score=305.74 Aligned_cols=831 Identities=14% Similarity=0.138 Sum_probs=556.1
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHhhccCCCCchh-hhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchh
Q 000146 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNR-IRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGP 94 (2052)
Q Consensus 16 l~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (2052)
|.+++.+.+.-.|..|-++|.+.++...-.-++. +.. +..
T Consensus 11 lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~---------------------------------------il~ 51 (1230)
T 1u6g_C 11 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERK---------------------------------------VVK 51 (1230)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHH---------------------------------------HHH
T ss_pred HHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHH---------------------------------------HHH
Confidence 6788899999999999999998875311111111 111 144
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh---------
Q 000146 95 LFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--------- 164 (2052)
Q Consensus 95 l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~--------- 164 (2052)
.+.+++.|.|..++..|+.+|..+++..+. .+...+++.|++- +. ..+.+|..|..++-.+++.-.
T Consensus 52 ~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~~i~~~Ll~~-l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~ 127 (1230)
T 1u6g_C 52 MILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVETIVDTLCTN-MLSDKEQLRDISSIGLKTVIGELPPASSGSALA 127 (1230)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHHHH-TTCSSSHHHHHHHHHHHHHHHHCC-----CCTH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHhCCCcccccchH
Confidence 455678899999999999999998876654 4566777877765 55 678899998888887776521
Q ss_pred ---hhhHHHHHHHHhh-ccChhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhC
Q 000146 165 ---VDVFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIG 239 (2052)
Q Consensus 165 ---~~~v~e~Ll~~l~-~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG 239 (2052)
...++..|..++. +.++.++.+++.++.+++..+|....+ ...+++.+.+.|.|.+..||..|...+..+....+
T Consensus 128 ~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 128 ANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcC
Confidence 2456677777887 588999999999999999999985544 56789999999999999999999999999998887
Q ss_pred CchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 000146 240 KDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 319 (2052)
Q Consensus 240 ~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vd 319 (2052)
+..+ +.+-+..+..|.. . .. .. .|...-.... . .....+ ..+.|| +
T Consensus 208 ~~~~-----~~~l~~l~~~L~~---~-~~--~~---~r~~a~~~l~-~-l~~~~~------------~~~~~~--l---- 253 (1230)
T 1u6g_C 208 NIVF-----VDLIEHLLSELSK---N-DS--MS---TTRTYIQCIA-A-ISRQAG------------HRIGEY--L---- 253 (1230)
T ss_dssp ---C-----TTHHHHHHHHHHH---T-CS--SC---SCTTHHHHHH-H-HHHHSS------------GGGTTS--C----
T ss_pred HHHH-----HHHHHHHHHHhcc---C-Cc--hh---HHHHHHHHHH-H-HHHHhH------------HHHHHH--H----
Confidence 5422 2222222222221 1 10 11 1111110000 0 000000 012221 1
Q ss_pred ccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhc------------------------
Q 000146 320 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLIT------------------------ 374 (2052)
Q Consensus 320 Il~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~dy~~l~~~L~k~l~------------------------ 374 (2052)
..+- +.+...+.+.++..|..+++.+..++. .+.-....+..+++.+.+.+.
T Consensus 254 --~~l~-~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~ 330 (1230)
T 1u6g_C 254 --EKII-PLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDD 330 (1230)
T ss_dssp --TTHH-HHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------------
T ss_pred --HHHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCccccccccccccccccc
Confidence 1122 345566677888899999998888774 222111123455555544442
Q ss_pred -------------CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC---
Q 000146 375 -------------DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL--- 438 (2052)
Q Consensus 375 -------------D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~--- 438 (2052)
|..-.|+..|+.+++.++...+..|.+|...++|.++..++|....||.++..++..++.....
T Consensus 331 ~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~ 410 (1230)
T 1u6g_C 331 DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQS 410 (1230)
T ss_dssp --------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--
T ss_pred chhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccc
Confidence 2234578999999999999777678999999999999999999999999999999888864110
Q ss_pred --------------------CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCCh
Q 000146 439 --------------------NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 498 (2052)
Q Consensus 439 --------------------~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~ 498 (2052)
.++.+++.+...+++.+|.+|..++..|..++...+ ..+.++++.++|.+...|.|.++
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~-~~l~~~l~~ll~~l~~~L~d~~~ 489 (1230)
T 1u6g_C 411 WLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLP-GALTQHIPVLVPGIIFSLNDKSS 489 (1230)
T ss_dssp ----------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHTTCSSS
T ss_pred cccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHch-hhhHHHHHHHHHHHHHHHcCCCC
Confidence 123445555556899999999999999999988754 33557889999999999999975
Q ss_pred --HHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhh
Q 000146 499 --EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS 576 (2052)
Q Consensus 499 --~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 576 (2052)
.||..+..+++.+....|...+.++++.+-
T Consensus 490 ~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~ll------------------------------------------------ 521 (1230)
T 1u6g_C 490 SSNLKIDALSCLYVILCNHSPQVFHPHVQALV------------------------------------------------ 521 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTH------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHhCCHHHHHhHHHHHH------------------------------------------------
Confidence 899988888887776666443444333221
Q ss_pred hccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHH
Q 000146 577 AASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKE 656 (2052)
Q Consensus 577 ~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~ 656 (2052)
+.++..+.+.+|+.
T Consensus 522 ------------------------------------------------------------------p~L~~~l~d~~~~v 535 (1230)
T 1u6g_C 522 ------------------------------------------------------------------PPVVACVGDPFYKI 535 (1230)
T ss_dssp ------------------------------------------------------------------HHHHHHHTCSSHHH
T ss_pred ------------------------------------------------------------------HHHHHHHcccchHH
Confidence 23445566778888
Q ss_pred HHHHHHHHHHHHHhccc--------cchHHHHHHHHHhcCCCC--cccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 000146 657 RLEAISSLRQQVEAVQN--------LDQSVEILVRLVCMLPGW--SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLL 726 (2052)
Q Consensus 657 Rl~ale~L~~~v~~~~~--------~~~~~~~Lv~~L~~~pg~--~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~ 726 (2052)
|.+++.-+..+++..+. .....+.++..+.. .+ .|.+..|.+.++.++..++...+......+..+++
T Consensus 536 ~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~--~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~ 613 (1230)
T 1u6g_C 536 TSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK--RLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQ 613 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH--HHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHH--HHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHH
Confidence 88888888877766432 12333444443321 13 57788899999999999999876544456788889
Q ss_pred HHHHhhhchhhhHHHHHHHHHHHhhh---ChhH----HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHH
Q 000146 727 GISERVADIKTRAHAMKCLTTFSEAV---GPGF----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLI 799 (2052)
Q Consensus 727 ~LveKlgd~K~r~~a~e~L~~l~E~~---~~~~----Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li 799 (2052)
.|.+.+.+..+|..+..++..++... ..+. +++.+...+ ...++.+|..++.++..++..+|. .++...+.
T Consensus 614 ~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l-~~~~~~~r~~a~~al~~l~~~~~~-~~~~~~v~ 691 (1230)
T 1u6g_C 614 IFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFL-RKNQRALKLGTLSALDILIKNYSD-SLTAAMID 691 (1230)
T ss_dssp HHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHT-TSCCHHHHHHHHHHHHHHHHHCCT-TCCHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcccc-cCCHHHHH
Confidence 88888887767777777787776532 2233 444444443 577899999999999999998875 34444454
Q ss_pred HHH---HhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHH-------------HHhcCCCCCCCCC
Q 000146 800 DFC---KDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDA-------------EYEKNPFEGTVVP 863 (2052)
Q Consensus 800 ~~l---~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~-------------efeK~~~~~~p~p 863 (2052)
+.+ ..+ +.+.|..++..+..++..|++..++.+..++..+-|.+...+.. -|..+...++
T Consensus 692 ~~l~~ll~l-l~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~--- 767 (1230)
T 1u6g_C 692 AVLDELPPL-ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGT--- 767 (1230)
T ss_dssp HHHTTCGGG-SCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHhh-cCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCC---
Confidence 444 344 67889999999999999999888776655555554544443321 1111100000
Q ss_pred ccccccccccCCCCCCCCCCCCcccccccccHHHHhhcC---C--CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHH
Q 000146 864 KKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE---S--PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGG 938 (2052)
Q Consensus 864 ~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~---d--~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~a 938 (2052)
+. .....+.+.++..+. + ..|..|..+...+..++...+..+ ++++..
T Consensus 768 ---------------------~~-~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~-----~~~~~~ 820 (1230)
T 1u6g_C 768 ---------------------NN-LGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG-----PAVVGQ 820 (1230)
T ss_dssp ---------------------TT-CSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCS-----HHHHTT
T ss_pred ---------------------CC-CCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhh-----HHHHHH
Confidence 00 001111122222211 1 367888888888888886432211 344444
Q ss_pred HHhhhcc--chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHH
Q 000146 939 LRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVT 1016 (2052)
Q Consensus 939 L~~rL~D--sN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~ 1016 (2052)
|...+.+ .+..++..++.+++.++...+ +.. ...+...++..|.|....||.+|..||+.++. .+++.++|.+.
T Consensus 821 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~--~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~-~~~~~~lp~ll 896 (1230)
T 1u6g_C 821 FIQDVKNSRSTDSIRLLALLSLGEVGHHID--LSG-QLELKSVILEAFSSPSEEVKSAASYALGSISV-GNLPEYLPFVL 896 (1230)
T ss_dssp TTTTTTTTTCCHHHHHHHHHHHHHHHHHSC--CCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH-HTHHHHHHHHH
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHhcccCC--Ccc-cccHHHHHHHHhCCCCHHHHHHHHHHhHHHhc-cCHHHHHHHHH
Confidence 4445543 345667778788888765432 222 24578999999999999999999999999874 35678899999
Q ss_pred HHHhcCccChhHHHHHHHHHHHHhccCCCC---CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1017 TALTDAKLGAEGRKDLFDWLSKQLTGLSGF---PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1017 ~~L~~~k~np~~R~~~l~~L~~~l~~~~~~---~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
..+.+. +..|...+.-|.+++...... +....+...++..+.|.+..+|..+.+|++.+....+
T Consensus 897 ~~l~~~---~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~ 963 (1230)
T 1u6g_C 897 QEITSQ---PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP 963 (1230)
T ss_dssp HHHHSC---GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG
T ss_pred HHHhcc---chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccCh
Confidence 999754 567888888888888754321 1224455557777888888999999999999887754
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-25 Score=320.37 Aligned_cols=877 Identities=15% Similarity=0.156 Sum_probs=557.3
Q ss_pred hhHHHHHhc-cCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh---hhh
Q 000146 93 GPLFKKTVA-DSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA---VDV 167 (2052)
Q Consensus 93 ~~l~~k~v~-DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~---~~~ 167 (2052)
.+.+.+.+. +.+..+++.|++++..+++..+.....|...+++.++.. |. ..+.+|..|+.++..+++... .+.
T Consensus 135 lp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~-L~~~~~~vR~~a~~al~~l~~~~~~~~~~~ 213 (1230)
T 1u6g_C 135 TGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ-LTSPRLAVRKRTIIALGHLVMSCGNIVFVD 213 (1230)
T ss_dssp HHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGG-GGCSSHHHHHHHHHHHHHHTTTC----CTT
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 455556677 488999999999999999887765566777788877765 66 578999999999999887632 245
Q ss_pred HHHHHHHHhhccC-hhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhH
Q 000146 168 FLDVMEKAIKNKV-AKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKT 245 (2052)
Q Consensus 168 v~e~Ll~~l~~K~-PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~ 245 (2052)
+++.|+..+.+.. +.++..++.++..+....|....+ +..+++.+...+.+.+..||+.+..++..+.+..|.+ +.+
T Consensus 214 ~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~-~~~ 292 (1230)
T 1u6g_C 214 LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE-VYP 292 (1230)
T ss_dssp HHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC-CHH
T ss_pred HHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH-HHH
Confidence 6777777776543 567888899999999888763322 5678999999999999999999999999999999864 545
Q ss_pred HHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCc
Q 000146 246 ILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLE 325 (2052)
Q Consensus 246 ~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~ 325 (2052)
++ ..+-|..++ .+... | .+ ....+ . + .++. . +.. ..+++.|.+
T Consensus 293 ~l-~~li~~ll~-------~l~~d--~-~~-~~~~d-----~---~-~~~~-~-~~~-~~~~~~~~~------------- 335 (1230)
T 1u6g_C 293 HV-STIINICLK-------YLTYD--P-NY-NYDDE-----D---E-DENA-M-DAD-GGDDDDQGS------------- 335 (1230)
T ss_dssp HH-HHHHHHHTT-------CCCCC--------------------------------------------------------
T ss_pred hH-HHHHHHHHH-------HhCCC--C-CC-CCccc-----c---c-cccc-c-ccc-ccccchhhc-------------
Confidence 44 333333222 11110 1 00 00000 0 0 0000 0 000 000000000
Q ss_pred cchhhhhcccCChHHHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhh-------
Q 000146 326 KSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT------- 397 (2052)
Q Consensus 326 ~~~f~~~l~s~kWkeR~eaL~~L~~L~~~-~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~------- 397 (2052)
.+.|....+..|+.|..|++.|..++.. +.....-|..+++.|...+.|.+..|+..++.++..+...++.
T Consensus 336 -~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~ 414 (1230)
T 1u6g_C 336 -DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 414 (1230)
T ss_dssp ----------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------
T ss_pred -ccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccC
Confidence 0122234567899999999999998852 3222223556777888888899999999999999999886643
Q ss_pred ------------cchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHhhcCCh--HH
Q 000146 398 ------------HFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDVVEDVKTSVKNKVP--LV 458 (2052)
Q Consensus 398 ------------~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~-----~~l~~ll~~l~~~L~~Knp--~v 458 (2052)
.+..+...++|.++..+++....+|.++..++..++.. + ..++.+++.+...++++++ .+
T Consensus 415 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~-~~~~l~~~l~~ll~~l~~~L~d~~~~~~v 493 (1230)
T 1u6g_C 415 PDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPGALTQHIPVLVPGIIFSLNDKSSSSNL 493 (1230)
T ss_dssp ------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH-STTTTGGGHHHHHHHHHHHTTCSSSCHHH
T ss_pred ccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-chhhhHHHHHHHHHHHHHHHcCCCCcchH
Confidence 34678888999999999999999999999999999886 2 2367889999999998875 99
Q ss_pred HHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC------hhHHHhHhhccHHHH
Q 000146 459 RSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM------RPLERSIEKLDDVRR 532 (2052)
Q Consensus 459 R~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge------~~~~~~l~~Ld~~k~ 532 (2052)
|.+++.++..++..+++..+.++++.++|.+..++.|.+..||..|..+++.+.+.+|+ ..+.+|++.+-+.-.
T Consensus 494 ~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll 573 (1230)
T 1u6g_C 494 KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTI 573 (1230)
T ss_dssp HHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHH
Confidence 99999999999988877777889999999999999999999999999999999999986 235555555433222
Q ss_pred HHH-------------HHHH----hcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCC
Q 000146 533 NKL-------------SEMI----AGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKK 595 (2052)
Q Consensus 533 kkI-------------~e~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k 595 (2052)
..+ -..+ ...|... . +. -+...+. ...... .+..
T Consensus 574 ~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~---~--------------~~--~~~~l~~-L~~~l~--~e~~------- 624 (1230)
T 1u6g_C 574 KRLKAADIDQEVKERAISCMGQIICNLGDNL---G--------------SD--LPNTLQI-FLERLK--NEIT------- 624 (1230)
T ss_dssp HHHSCSSSCHHHHHHHHHHHHHHHHHTGGGC---C--------------TH--HHHHHHH-HHHHTT--SSSH-------
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHhCchh---h--------------hh--HHHHHHH-HHHHhc--cchh-------
Confidence 111 0011 1100000 0 00 0000000 000000 0000
Q ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc
Q 000146 596 GGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD 675 (2052)
Q Consensus 596 ~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~ 675 (2052)
+.+... ..+.-..+.. +..+ +.. +..++ +.+...+.+.+|..|..+++.+..++...+...
T Consensus 625 ----r~~~~~-al~~i~~~~~--------~~~~--~~~---~~~i~-~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~~~ 685 (1230)
T 1u6g_C 625 ----RLTTVK-ALTLIAGSPL--------KIDL--RPV---LGEGV-PILASFLRKNQRALKLGTLSALDILIKNYSDSL 685 (1230)
T ss_dssp ----HHHHHH-HHHHHTTCSS--------CCCC--HHH---HHHHH-HHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTC
T ss_pred ----HHHHHH-HHHHHHhCcc--------ccch--HHH---HHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHhcccccC
Confidence 000000 0000000000 0001 111 11222 466778889999999999999999998854321
Q ss_pred hHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhh--
Q 000146 676 QSVEILVRLVCML-PGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAV-- 752 (2052)
Q Consensus 676 ~~~~~Lv~~L~~~-pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~-- 752 (2052)
..+.+..++... |.+.|.+..+...++++|..++...+.........+++.++..+.++.++..+.+++..+....
T Consensus 686 -~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 764 (1230)
T 1u6g_C 686 -TAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVV 764 (1230)
T ss_dssp -CHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHh
Confidence 234555555433 4567889999999999999988764432223455666777766665554443433333332211
Q ss_pred --C----hhHHHHHHHHHHh---------------------------------------hC----CCHHHHHHHHHHHHH
Q 000146 753 --G----PGFIFERLYKIMK---------------------------------------DH----KNPKVLSEGILWMVS 783 (2052)
Q Consensus 753 --~----~~~Vl~~L~~~l~---------------------------------------~~----KnpKv~~e~L~~L~~ 783 (2052)
. ...+++.++..+. .- .+..++.-++..+.+
T Consensus 765 ~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 844 (1230)
T 1u6g_C 765 TGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGE 844 (1230)
T ss_dssp TCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 1 1112222211100 00 112222222222222
Q ss_pred HHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000146 784 AVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVP 863 (2052)
Q Consensus 784 ~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p 863 (2052)
+-...+.. ...++++.+.++ +.+++..||.+|..+++.++.. .+ ..+-|.+++.|+.+ .+
T Consensus 845 ~g~~~~~~--~~~~l~~~~~~~-l~~~~~~Vr~aAa~aLg~l~~~---~~----~~~lp~ll~~l~~~-~~--------- 904 (1230)
T 1u6g_C 845 VGHHIDLS--GQLELKSVILEA-FSSPSEEVKSAASYALGSISVG---NL----PEYLPFVLQEITSQ-PK--------- 904 (1230)
T ss_dssp HHHHSCCC--SCTHHHHHHHHG-GGCSCHHHHHHHHHHHHHHHHH---TH----HHHHHHHHHHHHSC-GG---------
T ss_pred hcccCCCc--ccccHHHHHHHH-hCCCCHHHHHHHHHHhHHHhcc---CH----HHHHHHHHHHHhcc-ch---------
Confidence 21111111 113567777776 9999999999999999998732 12 22234445444321 00
Q ss_pred ccccccc---cccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHH
Q 000146 864 KKTVRAS---ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 940 (2052)
Q Consensus 864 ~r~~r~~---~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~ 940 (2052)
.|...-. .-.. ..+. +.+. .....|.+.|+..+++.+|.+|..+.+.++.++... ..++++.|.
T Consensus 905 ~~~~~l~al~e~i~--~~~~-~~~~--~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~--------~~~l~p~l~ 971 (1230)
T 1u6g_C 905 RQYLLLHSLKEIIS--SASV-VGLK--PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--------PETLLPRLK 971 (1230)
T ss_dssp GHHHHHHHHHHHHH--SSCS-TTTH--HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS--------GGGTHHHHT
T ss_pred hhHHHHHHHHHHHh--cCCh-hhHH--hhHHHHHHHHHHHhcCcchhhHHHHHHHHhhhhccC--------hHHHHHHHH
Confidence 0000000 0000 0000 1111 112346667778888889999999999999998631 267889999
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHH
Q 000146 941 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTA 1018 (2052)
Q Consensus 941 ~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~ 1018 (2052)
.++.|++..++..++.+++.+....+..+.+|++.+++.++..+.|.+..||++|..+|+.++++.+ +...++.+.+.
T Consensus 972 ~~l~~~~~~~R~~~~~~l~~~~~~~~~~~~~~l~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~ 1051 (1230)
T 1u6g_C 972 GYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPH 1051 (1230)
T ss_dssp TTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHccCchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHH
Confidence 9999999999999999999998888889999999999999999999999999999999999998865 22334444444
Q ss_pred HhcC-cc-------------------ChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1019 LTDA-KL-------------------GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1019 L~~~-k~-------------------np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
|... +. +-++|..+++.+...+......-++.+++..+..+|.| +.|+|--+...+..+
T Consensus 1052 l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l 1130 (1230)
T 1u6g_C 1052 LYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRL 1130 (1230)
T ss_dssp HHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHhcccHHhheeeccCCcccccCCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcccCc-hHHHHHHHHHHHHHH
Confidence 4311 00 12699999999999998776655678888889999999 589999999999999
Q ss_pred HHHcChhHHHHHhccC
Q 000146 1079 LRAGGQETIEKNLKDI 1094 (2052)
Q Consensus 1079 ~~~~G~e~~~~~l~~L 1094 (2052)
+..-+. .+...+..|
T Consensus 1131 ~~~~~~-~~~~~~~~~ 1145 (1230)
T 1u6g_C 1131 STLCPS-AVLQRLDRL 1145 (1230)
T ss_dssp HHSCCH-HHHTTTTTT
T ss_pred HhcCHH-HHHHHHHHH
Confidence 877655 344454444
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-22 Score=274.92 Aligned_cols=734 Identities=13% Similarity=0.148 Sum_probs=512.8
Q ss_pred ccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh---hhHHHHHHHHh
Q 000146 101 ADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV---DVFLDVMEKAI 176 (2052)
Q Consensus 101 ~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~---~~v~e~Ll~~l 176 (2052)
.+.+..+...|.-.|-.++++.-.....-....+...+-++|+ ..+.+|..+.+++..++..+.+ ..+++.|...+
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l 137 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLL 137 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence 5677788888877776666442111111112233333334466 5678999999998888776522 46788888889
Q ss_pred hccChhhHHHHHHHHHHHHHHhCCCC------cChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhh
Q 000146 177 KNKVAKAVVPAIDVMFQALSEFGAKI------IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEK 250 (2052)
Q Consensus 177 ~~K~PKvv~~~l~~L~~~l~~FG~~~------i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~ 250 (2052)
.+.++.++.+++.+|..+++.++... -.+..+++.+..+|++.+..||..|...+..+....+. .+...
T Consensus 138 ~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~-----~~~~~ 212 (852)
T 4fdd_A 138 DSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ-----ALMLH 212 (852)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH-----HHHTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH-----HHHHH
Confidence 99999999999999999999887631 12677889999999999999999998877544432210 00000
Q ss_pred ChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhh
Q 000146 251 MRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFW 330 (2052)
Q Consensus 251 Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~ 330 (2052)
+. .. + +.+.
T Consensus 213 ~~-~~---l-------------------------------------------------------------------~~l~ 221 (852)
T 4fdd_A 213 ID-SF---I-------------------------------------------------------------------ENLF 221 (852)
T ss_dssp HH-HH---H-------------------------------------------------------------------HHHH
T ss_pred HH-HH---H-------------------------------------------------------------------HHHH
Confidence 00 00 0 1223
Q ss_pred hhcccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH--hhhcchhhhhhHH
Q 000146 331 EGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRFLL 407 (2052)
Q Consensus 331 ~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~~~~~~ll 407 (2052)
..+.+.++..|+.+++.|..++. .++........++..+.+.++|....|+..|+.++..+++. .++.+.+|...++
T Consensus 222 ~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~ 301 (852)
T 4fdd_A 222 ALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLI 301 (852)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 33445667789999999988874 44433334568899999999999999999999999998863 4445678999999
Q ss_pred HHHHHHh-----------cc-----------CcHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhcCChHHHHHHHH
Q 000146 408 PVLLEKL-----------KE-----------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLN 464 (2052)
Q Consensus 408 p~LL~kl-----------kd-----------kK~~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~~L~~Knp~vR~~~l~ 464 (2052)
|.++..+ .| ..-.||.++..+|+.+... +..-++.+++.+...+++.+|.+|..++.
T Consensus 302 p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~ 381 (852)
T 4fdd_A 302 PVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGIL 381 (852)
T ss_dssp HHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999998 34 3456899999999999876 11224567777778888999999999999
Q ss_pred HHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCC
Q 000146 465 WVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGG 544 (2052)
Q Consensus 465 ~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~ 544 (2052)
.|..+.+.++. .+.++++.++|.+..+++|.++.||.+|..+++.+...++......
T Consensus 382 alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~---------------------- 438 (852)
T 4fdd_A 382 VLGAIAEGCMQ-GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT---------------------- 438 (852)
T ss_dssp HHHHTTTTTHH-HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTT----------------------
T ss_pred HHHHHHhcchH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHH----------------------
Confidence 99998776543 4557889999999999999999999999999987765443110000
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCC
Q 000146 545 DVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVE 624 (2052)
Q Consensus 545 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~ 624 (2052)
T Consensus 439 -------------------------------------------------------------------------------- 438 (852)
T 4fdd_A 439 -------------------------------------------------------------------------------- 438 (852)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 000146 625 PSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVI 703 (2052)
Q Consensus 625 ~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~L 703 (2052)
..+++ -+.++..|.+.++..|..|...|..+++..+ ........++..|.. .+++.+.+.....+
T Consensus 439 ----~~~~l--------l~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~--~l~~~~~~~~~~~~ 504 (852)
T 4fdd_A 439 ----YLKPL--------MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVF--AFSKYQHKNLLILY 504 (852)
T ss_dssp ----THHHH--------HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH--HHHHCCHHHHHHHH
T ss_pred ----HHHHH--------HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHH--HHHHhChHHHHHHH
Confidence 00111 1345667777888999999988888886633 222333434333321 12222333444566
Q ss_pred HHHHHHHHHcCC-C-chhhHHHHHHHHHHhh---hc--hhhhHHHHHHHHHHHhhhChhHH--HHHHHHHHhhCCCHHHH
Q 000146 704 EVINYLAATATK-F-PKKCVVLCLLGISERV---AD--IKTRAHAMKCLTTFSEAVGPGFI--FERLYKIMKDHKNPKVL 774 (2052)
Q Consensus 704 e~l~~l~~~~~~-~-~~~~~~~il~~LveKl---gd--~K~r~~a~e~L~~l~E~~~~~~V--l~~L~~~l~~~KnpKv~ 774 (2052)
+++..++...+. + ...++..++|.++++. .| ..++ .+.+++..++...+..++ +..+++
T Consensus 505 ~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~----------- 572 (852)
T 4fdd_A 505 DAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQ----------- 572 (852)
T ss_dssp HHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHH-----------
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHH-----------
Confidence 777777665433 2 2346778888888543 33 2343 677888888887775432 222222
Q ss_pred HHHHHHHHHHHHHhCCCCCChHhHHHHH-HhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHh
Q 000146 775 SEGILWMVSAVEDFGVSHLKLKDLIDFC-KDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYE 853 (2052)
Q Consensus 775 ~e~L~~L~~~i~~fG~~~l~~k~li~~l-~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efe 853 (2052)
.++..+...+... ..... ... .+..+..+|..++.+++.+...+|..+..++.+
T Consensus 573 -~~~~~l~~~l~~~---------~~~~~~~~~-~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~-------------- 627 (852)
T 4fdd_A 573 -RCVNLVQKTLAQA---------MLNNAQPDQ-YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVAR-------------- 627 (852)
T ss_dssp -HHHHHHHHHHHHH---------HHHHHCTTT-SCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHT--------------
T ss_pred -HHHHHHHHHHHHH---------HHhhcCCcc-cCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcC--------------
Confidence 2233333322110 00000 012 445677899999999999999999877666511
Q ss_pred cCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChh
Q 000146 854 KNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG 933 (2052)
Q Consensus 854 K~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~ 933 (2052)
..+-+-++..+.++++.+|..+...+..++......+.+. +.
T Consensus 628 -------------------------------------~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-l~ 669 (852)
T 4fdd_A 628 -------------------------------------SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPC-IA 669 (852)
T ss_dssp -------------------------------------CCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGG-HH
T ss_pred -------------------------------------CcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHH-HH
Confidence 0123456667788889999999999999997655666665 48
Q ss_pred hHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC----
Q 000146 934 ELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVH---- 1007 (2052)
Q Consensus 934 eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~--k~~VR~aa~~aL~~i~~~~~---- 1007 (2052)
++++.|...|.+.+..++..|+.+++.++..+|.++.+|+..+++.++..+.+. ...+++.+..|++.++..++
T Consensus 670 ~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~ 749 (852)
T 4fdd_A 670 DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVA 749 (852)
T ss_dssp HHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhC
Confidence 899999999988889999999999999999999999999999999999999875 56899999999999998753
Q ss_pred --chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC--CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1008 --LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1008 --l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
+..+++.+...|.... +.+.|..++..|...+...+.. .++..++. .+....+..++.+..-...|..+-..+|
T Consensus 750 ~~l~~~~~~~~~~l~~~~-d~~e~~~a~~~l~~li~~~p~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 827 (852)
T 4fdd_A 750 PMLQQFIRPWCTSLRNIR-DNEEKDSAFRGICTMISVNPSGVIQDFIFFCD-AVASWINPKDDLRDMFCKILHGFKNQVG 827 (852)
T ss_dssp GGHHHHHHHHHHHHHTSC-SSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH-HHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcccc-ccHHHHHHHHHHHHHHHhChHhHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 4567777777886432 3567999999998877765542 11121222 3455688899999999999999999999
Q ss_pred hhHHHHHhccCChHHHHHHHH
Q 000146 1084 QETIEKNLKDIQGPALALILE 1104 (2052)
Q Consensus 1084 ~e~~~~~l~~L~~~~~~~I~~ 1104 (2052)
.+....++..|+|..+..+..
T Consensus 828 ~~~~~~~~~~~~~~~~~~l~~ 848 (852)
T 4fdd_A 828 DENWRRFSDQFPLPLKERLAA 848 (852)
T ss_dssp HHHHHHHGGGCCHHHHHHHHH
T ss_pred chhHHHHHHhCCHHHHHHHHH
Confidence 988999999999998877664
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-25 Score=261.50 Aligned_cols=227 Identities=15% Similarity=0.186 Sum_probs=210.6
Q ss_pred CCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHH-HHHhccccCC--CCChhhHHHHHHhhh-ccchHHHHHHHH
Q 000146 880 GSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNK-ILEEANKRIQ--PAGTGELFGGLRGRL-YDSNKNLVMATL 955 (2052)
Q Consensus 880 ~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~-ll~~a~~~I~--~~~~~eL~~aL~~rL-~DsN~~V~~~Al 955 (2052)
.+|+++++||.++||++|...+.+++|++|++|++.|.. ++++ .+++. ...|++++..|++.+ +|+|..|+..|+
T Consensus 4 ~~d~~~~~~i~~kl~~~f~~~l~s~~w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~ 82 (249)
T 2qk1_A 4 MASMLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82 (249)
T ss_dssp SCCCCCCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hHhhcChhhhhhhCChhHHHHhhcCCHHHHHHHHHHHHHHHHhc-CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 478999999999999999999999999999999999999 9875 46777 556899999999999 899999999999
Q ss_pred HHHHHHHHHhC-hhhH-HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc------C-chhhHHHHHHHHhcCccCh
Q 000146 956 ITLGAVASAMG-PAVE-KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV------H-LDKMVPYVTTALTDAKLGA 1026 (2052)
Q Consensus 956 ~~l~~la~alg-~~~~-~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~------~-l~~ll~~l~~~L~~~k~np 1026 (2052)
++++.|+.+++ +.|. +|...++|.++++++|+++.|++++..||++++.++ + ++.+++.+...|.++ +|
T Consensus 83 ~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~ 160 (249)
T 2qk1_A 83 QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TP 160 (249)
T ss_dssp HHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--Ch
Confidence 99999999999 9999 999999999999999999999999999999999999 7 889999999999987 69
Q ss_pred hHHHHHHHHHHHHhccCCCC-----Cch-hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHH
Q 000146 1027 EGRKDLFDWLSKQLTGLSGF-----PDA-AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1100 (2052)
Q Consensus 1027 ~~R~~~l~~L~~~l~~~~~~-----~~~-~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~ 1100 (2052)
.+|.+++.||.+++...+.. +.+ ..+++.+..+++|++++||++|.+||+.+++++|++.|.+++..|++.+++
T Consensus 161 ~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ 240 (249)
T 2qk1_A 161 QIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRK 240 (249)
T ss_dssp HHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHHHHH
Confidence 99999999999999887642 234 677777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 000146 1101 LILERIKLN 1109 (2052)
Q Consensus 1101 ~I~~~l~k~ 1109 (2052)
+|+++++++
T Consensus 241 ki~~~~~~~ 249 (249)
T 2qk1_A 241 KIEETVKTL 249 (249)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhcC
Confidence 999999863
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-21 Score=263.71 Aligned_cols=708 Identities=10% Similarity=0.083 Sum_probs=492.8
Q ss_pred HHHhhcCCChhHHHHHHHHHHHHHhhhhhh--hHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcC--hH-HHHhh
Q 000146 137 IAAKCLTGRPKTVEKAQAVFMLWVELEAVD--VFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP--PK-RILKM 211 (2052)
Q Consensus 137 LieK~L~~r~~tk~~A~~~~l~~~e~~~~~--~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~--~k-~il~~ 211 (2052)
+++..++....+|..|.+-+..+-. .++ ..+-.++..+.+..+.++..+...|.+.+..+-. .++ .+ .+...
T Consensus 18 ~l~~~~s~d~~~r~~Ae~~L~~~~~--~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~-~~~~~~~~~ik~~ 94 (852)
T 4fdd_A 18 LLKESQSPDTTIQRTVQQKLEQLNQ--YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ-NFPNGVTDFIKSE 94 (852)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHTT--SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG-GCCHHHHHHHHHH
T ss_pred HHHHHhCcCHHHHHHHHHHHHHHHh--CCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHH
Confidence 4445566677888888887765422 233 2223344444567788999998888877754222 233 12 35566
Q ss_pred hhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhccccc
Q 000146 212 LPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISE 291 (2052)
Q Consensus 212 l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~ 291 (2052)
+...+.+.++.||..+..++.+|.++.+++.. .++
T Consensus 95 ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~l---------------------------------------- 129 (852)
T 4fdd_A 95 CLNNIGDSSPLIRATVGILITTIASKGELQNW-----PDL---------------------------------------- 129 (852)
T ss_dssp HHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TTH----------------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HHH----------------------------------------
Confidence 67778888889999888888877766432100 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCC-----CCCChHHH
Q 000146 292 DVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRI-----APGDFTEV 365 (2052)
Q Consensus 292 ~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki-----~~~dy~~l 365 (2052)
+ +.+.+.+.+.+|..|..++..|..++. .+.. .......+
T Consensus 130 --------------------------------l--~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~i 175 (852)
T 4fdd_A 130 --------------------------------L--PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIM 175 (852)
T ss_dssp --------------------------------H--HHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHH
T ss_pred --------------------------------H--HHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHH
Confidence 0 133444555667788889988888763 2221 12336788
Q ss_pred HHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----CCCHH
Q 000146 366 CRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----CLNLV 441 (2052)
Q Consensus 366 ~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~----~~~l~ 441 (2052)
+..|.+.++|.+..|+..|+.++..+.......+..+...+++.++..+.|....||..+..+|..++... ...++
T Consensus 176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~ 255 (852)
T 4fdd_A 176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 255 (852)
T ss_dssp HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 88999999999999999999999988776666666778889999999999999999999999999999861 13467
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcC-hhHHHHhhhhHHHHHHHhh-----------cC-----------CCh
Q 000146 442 DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSS-KAAVLKVHKDYVPICMECL-----------ND-----------GTP 498 (2052)
Q Consensus 442 ~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~-~~~l~~~l~~l~p~l~k~l-----------~D-----------s~~ 498 (2052)
.+++.+...++++.+.+|..++.|+..+.+... ...+.+++..++|.+...+ .| ...
T Consensus 256 ~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~ 335 (852)
T 4fdd_A 256 NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDW 335 (852)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCC
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccc
Confidence 788888888899999999999999988665321 2234567788999999988 34 344
Q ss_pred HHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhc
Q 000146 499 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAA 578 (2052)
Q Consensus 499 ~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 578 (2052)
.||.+|..+++.+...+|+..+..++
T Consensus 336 ~vr~~a~~~L~~la~~~~~~~~~~l~------------------------------------------------------ 361 (852)
T 4fdd_A 336 NLRKCSAAALDVLANVYRDELLPHIL------------------------------------------------------ 361 (852)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHHH------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHH------------------------------------------------------
Confidence 56777777777777666643211110
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHH
Q 000146 579 SMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERL 658 (2052)
Q Consensus 579 s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl 658 (2052)
+-+...+.|.+|+.|.
T Consensus 362 ----------------------------------------------------------------~~l~~~l~~~~~~~R~ 377 (852)
T 4fdd_A 362 ----------------------------------------------------------------PLLKELLFHHEWVVKE 377 (852)
T ss_dssp ----------------------------------------------------------------HHHHHHHTCSSHHHHH
T ss_pred ----------------------------------------------------------------HHHHHHhcCCCHHHHH
Confidence 1233456677899999
Q ss_pred HHHHHHHHHHHhccc-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC-CchhhHHHHHHHHHHhhhc--
Q 000146 659 EAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-FPKKCVVLCLLGISERVAD-- 734 (2052)
Q Consensus 659 ~ale~L~~~v~~~~~-~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~-~~~~~~~~il~~LveKlgd-- 734 (2052)
.|+..+..+.+.... .....+.++..+.. .++|.+..|...++.++..+.+..+. ........+++.|+..+.|
T Consensus 378 aa~~alg~i~~~~~~~~~~~l~~~l~~l~~--~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~ 455 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN 455 (852)
T ss_dssp HHHHHHHHTTTTTHHHHGGGHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence 999999877655321 11233445555432 46899999999999999988875422 2345677899999988876
Q ss_pred hhhhHHHHHHHHHHHhhhChh------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC---hHhHHHHHH--
Q 000146 735 IKTRAHAMKCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCK-- 803 (2052)
Q Consensus 735 ~K~r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~---~k~li~~l~-- 803 (2052)
.++|..|..+|..+++..+.. .+++.++..+ +..+.+....++..+..+....|..... +..+++.+.
T Consensus 456 ~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l-~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~ 534 (852)
T 4fdd_A 456 KRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK 534 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHH-HHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Confidence 578999999999999876643 2444444444 3334444444455555555544542111 233444333
Q ss_pred -hhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCC
Q 000146 804 -DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 882 (2052)
Q Consensus 804 -~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d 882 (2052)
.. +.+.++.+| .+.+++..+...+|..+.+|+..+-+.++..|...+.+-.. .... .+
T Consensus 535 ~~~-l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~-----------~~~~--------~~ 593 (852)
T 4fdd_A 535 WNM-LKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAML-----------NNAQ--------PD 593 (852)
T ss_dssp HHH-SCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHC--------TT
T ss_pred HHh-cccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhcC--------Cc
Confidence 33 667788887 78999999999999999999988877777777665432100 0000 00
Q ss_pred CCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhhhccchHHHHHHHHHHHHHH
Q 000146 883 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAV 961 (2052)
Q Consensus 883 ~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~aL~~rL~DsN~~V~~~Al~~l~~l 961 (2052)
..+..+-..|..+++.+..++...+..+.+.. -..++..+...+.|.+..|+..|+.+++.+
T Consensus 594 -----------------~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l 656 (852)
T 4fdd_A 594 -----------------QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDL 656 (852)
T ss_dssp -----------------TSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred -----------------ccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 00111223577888888888875434443321 046889999999999999999999999999
Q ss_pred HHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCccChhHHHHHHHH
Q 000146 962 ASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDW 1035 (2052)
Q Consensus 962 a~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~k~np~~R~~~l~~ 1035 (2052)
+..+|..|.+|+..++|.+++.+.+....+|..|..+++.++.++| +..+++.+...|.++..+..++..++..
T Consensus 657 ~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~ 736 (852)
T 4fdd_A 657 TKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAIT 736 (852)
T ss_dssp HHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Confidence 9999999999999999999999999899999999999999998885 3456667777777654345677777777
Q ss_pred HHHHhccCCC--CCchhhhHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHcChh
Q 000146 1036 LSKQLTGLSG--FPDAAHLLKPASIAMTD-KSSDVRKAAEACIVEILRAGGQE 1085 (2052)
Q Consensus 1036 L~~~l~~~~~--~~~~~~ll~pl~~~L~D-~~~dVRkaA~~~L~~l~~~~G~e 1085 (2052)
+.+.....+. .+.+..++.+++..|.+ .+.+.|..|..+|-.++..-+..
T Consensus 737 igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~~ 789 (852)
T 4fdd_A 737 IGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSG 789 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChHh
Confidence 7766555433 35677888888888855 56678999999999999886653
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-20 Score=259.70 Aligned_cols=687 Identities=13% Similarity=0.095 Sum_probs=472.8
Q ss_pred HHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcc-ChhhHHHHHHHHHHHHHHhCCCC--c
Q 000146 132 EVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK-VAKAVVPAIDVMFQALSEFGAKI--I 203 (2052)
Q Consensus 132 ~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~----~~v~e~Ll~~l~~K-~PKvv~~~l~~L~~~l~~FG~~~--i 203 (2052)
.+-..|++- |. ..+.+|..+.+++..++..+-+ ..+++.|...+.+. +|.++..++.++..+.+.++... +
T Consensus 95 ~ik~~ll~~-l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 173 (861)
T 2bpt_A 95 QIKTNALTA-LVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL 173 (861)
T ss_dssp HHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred HHHHHHHHH-HCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHH
Confidence 344455554 55 5678888888887776655422 36778888888777 99999999999999999888642 1
Q ss_pred --ChHHHHhhhhhhhCCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhh
Q 000146 204 --PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAE 279 (2052)
Q Consensus 204 --~~k~il~~l~~ll~~~--dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~ 279 (2052)
....+++.+...+.|. +..||..|..++..+..|++. .+ .. ......+
T Consensus 174 ~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~-----~~-~~--~~~~~~l-------------------- 225 (861)
T 2bpt_A 174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKN-----NM-ER--EGERNYL-------------------- 225 (861)
T ss_dssp GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHH-----HH-TS--HHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH-----Hc-cC--hhHHHHH--------------------
Confidence 2456888888888888 889999999988887766532 11 10 0000000
Q ss_pred hhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCCC
Q 000146 280 QDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIA 358 (2052)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~ 358 (2052)
+ ..+.+.+.+.+|+.|..+++.|..++. .+...
T Consensus 226 -----------------------------------------l-----~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~ 259 (861)
T 2bpt_A 226 -----------------------------------------M-----QVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFM 259 (861)
T ss_dssp -----------------------------------------H-----HHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred -----------------------------------------H-----HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012223456679999999999988873 33322
Q ss_pred CCChH-HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhh----------------hc-chhhhhhHHHHHHHHhcc----
Q 000146 359 PGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGLR----------------TH-FSGSSRFLLPVLLEKLKE---- 416 (2052)
Q Consensus 359 ~~dy~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~----------------~~-f~~~~~~llp~LL~klkd---- 416 (2052)
...+. .++..+...+.|.+..|+..|+.++..++.... +. +.++...++|.|+..+.+
T Consensus 260 ~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d 339 (861)
T 2bpt_A 260 KPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNED 339 (861)
T ss_dssp HHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 22334 677778888889999999999999999987642 11 246778999999999974
Q ss_pred ---CcHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHh
Q 000146 417 ---KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMEC 492 (2052)
Q Consensus 417 ---kK~~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~ 492 (2052)
....+|.++..+|..++.. +..-++.+++.+...+++.+|.+|..++..+..+.....+..+.++++.++|.+...
T Consensus 340 ~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~ 419 (861)
T 2bpt_A 340 PEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL 419 (861)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHG
T ss_pred cccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999875 212356777888888899999999999999999886655456678889999999999
Q ss_pred hcCCChHHHHHHHHHHHHHHHHhCChhH-HHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcch
Q 000146 493 LNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 571 (2052)
Q Consensus 493 l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~-~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 571 (2052)
+.|.++.||.++..+++.+...++.... .++
T Consensus 420 l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~------------------------------------------------ 451 (861)
T 2bpt_A 420 MNDQSLQVKETTAWCIGRIADSVAESIDPQQH------------------------------------------------ 451 (861)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT------------------------------------------------
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH------------------------------------------------
Confidence 9999999999999998888776653100 000
Q ss_pred hhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhc
Q 000146 572 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS 651 (2052)
Q Consensus 572 ~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s 651 (2052)
.+++- +.++..|.+
T Consensus 452 ----------------------------------------------------------~~~~l--------~~l~~~l~~ 465 (861)
T 2bpt_A 452 ----------------------------------------------------------LPGVV--------QACLIGLQD 465 (861)
T ss_dssp ----------------------------------------------------------HHHHH--------HHHHHHHTS
T ss_pred ----------------------------------------------------------HHHHH--------HHHHHHhcc
Confidence 01110 233444555
Q ss_pred CCHHHHHHHHHHHHHHHHhcc-----ccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 000146 652 AVWKERLEAISSLRQQVEAVQ-----NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLL 726 (2052)
Q Consensus 652 ~~Wk~Rl~ale~L~~~v~~~~-----~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~ 726 (2052)
. +..|..+...+..+++..+ ......+.++..|...-.-.|.+..|...+++++..++...+.-....+..++|
T Consensus 466 ~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~ 544 (861)
T 2bpt_A 466 H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASIST 544 (861)
T ss_dssp C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHH
Confidence 4 7777777777777766532 112233333332221000125556788889999999988865433445566666
Q ss_pred HHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC-hHhHHHHHHhh
Q 000146 727 GISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDT 805 (2052)
Q Consensus 727 ~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~-~k~li~~l~~~ 805 (2052)
.+++.+.+...-+ ...... -.....+.++..++..|..++..+|....+ +..+++.+...
T Consensus 545 ~l~~~l~~~~~~~---------~~i~~~----------~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~ 605 (861)
T 2bpt_A 545 FVMDKLGQTMSVD---------ENQLTL----------EDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRL 605 (861)
T ss_dssp HHHHHHHHHTTSC---------GGGCCH----------HHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh---------cccCCh----------hhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 6665544320000 000000 000123445677788888888877763222 45667766666
Q ss_pred CCCCCcH-HHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCC
Q 000146 806 GLQSSAA-ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 884 (2052)
Q Consensus 806 gL~~~n~-~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~l 884 (2052)
+.+.+. .||..+..+++.+....|..+..|+..+-|.+.+.
T Consensus 606 -l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~------------------------------------- 647 (861)
T 2bpt_A 606 -LEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKA------------------------------------- 647 (861)
T ss_dssp -HHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH-------------------------------------
T ss_pred -HccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-------------------------------------
Confidence 777766 89999999999999999988877775544443333
Q ss_pred CcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccch--HHHHHHHHHHHHHHH
Q 000146 885 PREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN--KNLVMATLITLGAVA 962 (2052)
Q Consensus 885 pr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN--~~V~~~Al~~l~~la 962 (2052)
+.+++|.+|..++..+..++...+..+.+. ..++++.|...+.|.+ ..++..++.+++.++
T Consensus 648 ----------------l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~ 710 (861)
T 2bpt_A 648 ----------------LNQVDSPVSITAVGFIADISNSLEEDFRRY-SDAMMNVLAQMISNPNARRELKPAVLSVFGDIA 710 (861)
T ss_dssp ----------------HHCTTSHHHHHHHHHHHHHHHHTGGGGHHH-HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHH
T ss_pred ----------------hccccHHHHHHHHHHHHHHHHHhchhccch-HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHH
Confidence 334456788899999998887544433333 3778888888888776 889999999999999
Q ss_pred HHhChhhHHhhhHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC-----chhhHHHHHHHH----hcC
Q 000146 963 SAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH-----LDKMVPYVTTAL----TDA 1022 (2052)
Q Consensus 963 ~alg~~~~~~~~~llp~ll~~l~D~k-----------~~VR~aa~~aL~~i~~~~~-----l~~ll~~l~~~L----~~~ 1022 (2052)
..+|..|.+|+..++|.++..+..+. ..+|.++.+++..++..++ +..+++.+...| .+.
T Consensus 711 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~ 790 (861)
T 2bpt_A 711 SNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDP 790 (861)
T ss_dssp HHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999987432 4689999999999998887 444445444443 331
Q ss_pred c--cChhHHHHHHHHHHHHhccC-CCC--Cchh-hhHHHHHhhcC---CCCHHHHHHHHHHHHHHHHHc
Q 000146 1023 K--LGAEGRKDLFDWLSKQLTGL-SGF--PDAA-HLLKPASIAMT---DKSSDVRKAAEACIVEILRAG 1082 (2052)
Q Consensus 1023 k--~np~~R~~~l~~L~~~l~~~-~~~--~~~~-~ll~pl~~~L~---D~~~dVRkaA~~~L~~l~~~~ 1082 (2052)
. .+..+|..++.++......+ +.. +.+. .+++.+++++. +++..|+..|.-++..+.+.+
T Consensus 791 ~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 791 QLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 0 04679999999998877766 332 2344 56777888764 677899999998888776543
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.1e-23 Score=269.69 Aligned_cols=552 Identities=18% Similarity=0.195 Sum_probs=377.1
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~-~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 406 (2052)
.+...+.+.+|+.|..|+..|..++.. +.+ ....++++.|...+ |.+..|+..++.+++.++..++.. .|...+
T Consensus 14 ~l~~~l~s~~~~~R~~A~~~l~~i~~~--~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~--~~~~~l 88 (588)
T 1b3u_A 14 VLIDELRNEDVQLRLNSIKKLSTIALA--LGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP--EYVHCL 88 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHH--SCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--GGGGGG
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHH--hCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--HHHHHH
Confidence 577789999999999999999887631 111 12356777787766 778889999999998877766542 477888
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000146 407 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 482 (2052)
Q Consensus 407 lp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~----~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 482 (2052)
+|.|...+.+....||+++..+|..++.. .+.. .+++.+....++.++.+|..++.++..+....+.. ..
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~--~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~~ 162 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VK 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----HH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----HH
Confidence 99988888889999999999999999875 3322 34555555557788999999999999887765533 34
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCC
Q 000146 483 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 562 (2052)
Q Consensus 483 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 562 (2052)
+.++|.+..++.|.++.||.+|.++++.+...+|.+.. ...+-+ .+...+...
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~l~~----~l~~~~~d~-------------------- 215 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV---KSEIIP----MFSNLASDE-------------------- 215 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH---HHTHHH----HHHHHHTCS--------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH---HHHHHH----HHHHHhcCC--------------------
Confidence 78899999999999999999999999999998885321 111111 111111100
Q ss_pred CCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000146 563 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 642 (2052)
Q Consensus 563 ~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 642 (2052)
...++..+....+ ... ..++.++. .+.+-
T Consensus 216 -------~~~vr~~a~~~l~--------------------------------~l~--------~~~~~~~~----~~~~~ 244 (588)
T 1b3u_A 216 -------QDSVRLLAVEACV--------------------------------NIA--------QLLPQEDL----EALVM 244 (588)
T ss_dssp -------CHHHHTTHHHHHH--------------------------------HHH--------HHSCHHHH----HHHTH
T ss_pred -------cHHHHHHHHHHHH--------------------------------HHH--------HhCCHHHH----HHHHH
Confidence 0001000000000 000 00011111 11122
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 722 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 722 (2052)
+-+...+.+.+|..|..+++.|..+....+. .....
T Consensus 245 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--------------------------------------------~~~~~ 280 (588)
T 1b3u_A 245 PTLRQAAEDKSWRVRYMVADKFTELQKAVGP--------------------------------------------EITKT 280 (588)
T ss_dssp HHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--------------------------------------------HHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--------------------------------------------ccchh
Confidence 3444555556666666666555544332211 00112
Q ss_pred HHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhChh----H----HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCC
Q 000146 723 LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----F----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 792 (2052)
Q Consensus 723 ~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~----~----Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~ 792 (2052)
.+++.++.-+.| ..+|..+..+|..+++..+.+ . +++.+... .++++|+||..++.+|..+...+|...
T Consensus 281 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~-l~d~~~~vR~~a~~~l~~l~~~~~~~~ 359 (588)
T 1b3u_A 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN 359 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHhhHhH
Confidence 234444444444 246666777777777766543 2 33333333 368899999999999888888777532
Q ss_pred CChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccc
Q 000146 793 LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES 872 (2052)
Q Consensus 793 l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~ 872 (2052)
....+++.+..+ +.+.++.||.++...++.+...+|... +
T Consensus 360 -~~~~l~p~l~~~-l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~------------------------------------ 399 (588)
T 1b3u_A 360 -TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--L------------------------------------ 399 (588)
T ss_dssp -HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH--H------------------------------------
T ss_pred -HHHHHHHHHHHH-hCCCchHHHHHHHHHHHHHHHhcCHHH--H------------------------------------
Confidence 134566777776 889999999999998888877666421 0
Q ss_pred cCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHH
Q 000146 873 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 952 (2052)
Q Consensus 873 ~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~ 952 (2052)
...+.+.+...+.|.+|++|..+++.+..+....+.... ...+++.|...|.|.+..|+.
T Consensus 400 -----------------~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~~~~Vr~ 459 (588)
T 1b3u_A 400 -----------------SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF---DEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp -----------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC---CHHHHHHHHHGGGCSSHHHHH
T ss_pred -----------------HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHHHhcCCcHHHHH
Confidence 001234455567888999999999999998874322211 257889999999999999999
Q ss_pred HHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhHHHHHHHHhcCccChhH
Q 000146 953 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMVPYVTTALTDAKLGAEG 1028 (2052)
Q Consensus 953 ~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~----~ll~~l~~~L~~~k~np~~ 1028 (2052)
.|+.+++.++..+|..+ +...++|.++..+.|.+..+|.++..++..++..+|.+ .++|.+...+.++ ++.+
T Consensus 460 ~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~--~~~V 535 (588)
T 1b3u_A 460 AATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANV 535 (588)
T ss_dssp HHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHH
T ss_pred HHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCC--CchH
Confidence 99999999999999864 46788999999999999999999999999999988753 5667777777765 5899
Q ss_pred HHHHHHHHHHHhccCCCCCchhhhHHH-HHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1029 RKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1029 R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
|..++..+.......+.. .....+.| +...++|.+++||..|..++..+
T Consensus 536 r~~a~~~l~~l~~~~~~~-~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 536 RFNVAKSLQKIGPILDNS-TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHGGGSCHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhchh-hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 999999999877655321 12234444 55667999999999999998754
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-20 Score=260.16 Aligned_cols=661 Identities=13% Similarity=0.136 Sum_probs=453.3
Q ss_pred hhHHHHHhccC-cHHHHHHHHHHHHHHHHHhhhh---hhhhhHHHHHHHHHhhcC-C--ChhHHHHHHHHHHHHHhh-h-
Q 000146 93 GPLFKKTVADS-NAPVQDKALDALIAYLKAADAD---AGRYAKEVCDAIAAKCLT-G--RPKTVEKAQAVFMLWVEL-E- 163 (2052)
Q Consensus 93 ~~l~~k~v~Ds-N~~aqe~gl~al~~~l~~~~~~---~~~~~~~vi~~LieK~L~-~--r~~tk~~A~~~~l~~~e~-~- 163 (2052)
.+.+.+.+.+. |..+.+.++.++..+++..+.. ...+...+++.++. ++. . .+.+|..|++++..+++. +
T Consensus 136 l~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~-~l~~~~~~~~vr~~al~~l~~~~~~~~~ 214 (861)
T 2bpt_A 136 MKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQ-GAQSTETSKAVRLAALNALADSLIFIKN 214 (861)
T ss_dssp HHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHH-HHSTTCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777 9999999999999998876543 24566667776654 465 3 678999999999887553 1
Q ss_pred h------hhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcC-hH-HHHhhhhhhhCCCChhHHHHHHHHHHHHH
Q 000146 164 A------VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PK-RILKMLPELFDHQDQNVRASSKGLTLELC 235 (2052)
Q Consensus 164 ~------~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k-~il~~l~~ll~~~dk~VR~~a~~l~vely 235 (2052)
. ...+++.|...+.+..++++..++.+|..++..++....+ +. .+++.+...+.+.+..||..|.+++..+.
T Consensus 215 ~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~ 294 (861)
T 2bpt_A 215 NMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTIC 294 (861)
T ss_dssp HHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 1 1346677777788889999999999999999998864322 34 67777778889999999999999988887
Q ss_pred HhhCCchhhHHHHh----------hChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCC
Q 000146 236 RWIGKDPVKTILFE----------KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADV 305 (2052)
Q Consensus 236 ~~lG~~~l~~~L~~----------~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (2052)
+.... +...-.+ -+++....-+...+..+ . .. .
T Consensus 295 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l-----------------------~----~~-----~--- 337 (861)
T 2bpt_A 295 EEEID--IAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL-----------------------T----RQ-----N--- 337 (861)
T ss_dssp HHHHH--HHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT-----------------------T----CC-----C---
T ss_pred HHHHh--hhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHH-----------------------H----hc-----c---
Confidence 66421 0000000 00000000000001100 0 00 0
Q ss_pred CCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHH
Q 000146 306 PPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAI 385 (2052)
Q Consensus 306 ~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~ 385 (2052)
+ | ..+.+|..|+.+...|..++..- ....+..+++.+...+.|.+..++..|+
T Consensus 338 -~--d----------------------~~d~~~~~r~~a~~~L~~l~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~~a~ 390 (861)
T 2bpt_A 338 -E--D----------------------PEDDDWNVSMSAGACLQLFAQNC--GNHILEPVLEFVEQNITADNWRNREAAV 390 (861)
T ss_dssp -C--C-----------------------CCCCCHHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred -c--c----------------------cccccCcHHHHHHHHHHHHHHHc--cHhHHHHHHHHHHHHcCCCChhHHHHHH
Confidence 0 0 01235899999999998877421 1223578888999999999999999999
Q ss_pred HHHHHHHHHhh-hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHhhcCChHH
Q 000146 386 QAIGNLARGLR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG------CLNLVDVVEDVKTSVKNKVPLV 458 (2052)
Q Consensus 386 ~~l~~La~~L~-~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~------~~~l~~ll~~l~~~L~~Knp~v 458 (2052)
.+++.++.+.+ ..+.+|...++|.|+..++|.++.||.++..++..++... ...+..+++.+..++++. +.+
T Consensus 391 ~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v 469 (861)
T 2bpt_A 391 MAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKV 469 (861)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHH
Confidence 99999998876 6678999999999999999999999999999999888751 134788999999999876 999
Q ss_pred HHHHHHHHHHHHHhcC---hhHHHHhhhhHHHHHHHhhc--CCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHH
Q 000146 459 RSLTLNWVTFCIETSS---KAAVLKVHKDYVPICMECLN--DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 533 (2052)
Q Consensus 459 R~~~l~~L~~~l~~~~---~~~l~~~l~~l~p~l~k~l~--Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~k 533 (2052)
|..++..|..+++... +..+.++++.+++.+.+++. |.++.||.++.++++.+....|+. +.+++..+-+.-.+
T Consensus 470 ~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~ 548 (861)
T 2bpt_A 470 ATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMD 548 (861)
T ss_dssp HHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHH
Confidence 9999999999888754 34566888999999999998 555899999999999999999965 56666665444444
Q ss_pred HHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcC
Q 000146 534 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQET 613 (2052)
Q Consensus 534 kI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~ 613 (2052)
.+...+.-.
T Consensus 549 ~l~~~~~~~----------------------------------------------------------------------- 557 (861)
T 2bpt_A 549 KLGQTMSVD----------------------------------------------------------------------- 557 (861)
T ss_dssp HHHHHTTSC-----------------------------------------------------------------------
T ss_pred HHHHHHhhh-----------------------------------------------------------------------
Confidence 443321000
Q ss_pred CcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcc
Q 000146 614 SKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSE 693 (2052)
Q Consensus 614 s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~D 693 (2052)
....+.++-+ .....|..+++.|..++...+.
T Consensus 558 -----------~~i~~~~~~~-----------------~~~~~~~~~~~~l~~l~~~~~~-------------------- 589 (861)
T 2bpt_A 558 -----------ENQLTLEDAQ-----------------SLQELQSNILTVLAAVIRKSPS-------------------- 589 (861)
T ss_dssp -----------GGGCCHHHHH-----------------HHHHHHHHHHHHHHHHHHHCGG--------------------
T ss_pred -----------cccCChhhHH-----------------HHHHHHHHHHHHHHHHHHHhhh--------------------
Confidence 0000101000 0011233344444433333211
Q ss_pred cHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhc--h-hhhHHHHHHHHHHHhhhChhH------HHHHHHHH
Q 000146 694 KNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--I-KTRAHAMKCLTTFSEAVGPGF------IFERLYKI 764 (2052)
Q Consensus 694 sN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~-K~r~~a~e~L~~l~E~~~~~~------Vl~~L~~~ 764 (2052)
.....+..+++.++.-+.+ . .++..+..++..+++..+.++ +++.++..
T Consensus 590 ----------------------~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~ 647 (861)
T 2bpt_A 590 ----------------------SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKA 647 (861)
T ss_dssp ----------------------GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH
T ss_pred ----------------------hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 0111222333333333322 2 456667777777777665433 34445555
Q ss_pred HhhCCCHHHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhhCCCCCc--HHHHHHHHHHHHHHHHhhChhhHhhhhhcc
Q 000146 765 MKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVK 841 (2052)
Q Consensus 765 l~~~KnpKv~~e~L~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~~n--~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lk 841 (2052)
+ +++++.++..++..+..++..+|.... .+..+++.+... +.+.+ +.||..+..+++.+....|+.+..|+..+-
T Consensus 648 l-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l 725 (861)
T 2bpt_A 648 L-NQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM-ISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIM 725 (861)
T ss_dssp H-HCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH-HHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred h-ccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHH-hCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4 678999999999999999988875211 134566666665 77665 899999999999999999999999998877
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHH
Q 000146 842 PALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILE 921 (2052)
Q Consensus 842 P~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~ 921 (2052)
|.+.+.++. .. + + .| ++.. +-.+.+|..+++.+..++.
T Consensus 726 ~~l~~~~~~----~~--~---~-----------------~d------------~d~~----~~~~~vr~~~l~~~~~i~~ 763 (861)
T 2bpt_A 726 ALCVAAQNT----KP--E---N-----------------GT------------LEAL----DYQIKVLEAVLDAYVGIVA 763 (861)
T ss_dssp HHHHHHHTC----CC--S---S-----------------SS------------HHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----CC--C---C-----------------CC------------hHHH----HHHHHHHHHHHHHHHHHHH
Confidence 777665421 00 0 0 00 0100 1135789999999999997
Q ss_pred hcc---ccCCCCChhhHHHHHHhhhccc----hHHHHHHHHHHHHHHHHHh-ChhhHHhhh-HHHHHHHHHhC---CCcH
Q 000146 922 EAN---KRIQPAGTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAM-GPAVEKSSK-GVLSDILKCLG---DNKK 989 (2052)
Q Consensus 922 ~a~---~~I~~~~~~eL~~aL~~rL~Ds----N~~V~~~Al~~l~~la~al-g~~~~~~~~-~llp~ll~~l~---D~k~ 989 (2052)
..+ ..+.+. ..+++..|...+.|. +..|+..|+.+++.++..+ |+.|.+|.. .++|.+++.+. +...
T Consensus 764 ~l~~~~~~~~~~-~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~~~ 842 (861)
T 2bpt_A 764 GLHDKPEALFPY-VGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQ 842 (861)
T ss_dssp HTTTCHHHHGGG-HHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCH
T ss_pred HHccCHHHHHHH-HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHhhccCCCH
Confidence 532 123333 377888888888885 8899999999999999999 999999999 99999999887 4666
Q ss_pred HHHHHHHHHHHHHHHhc
Q 000146 990 HMRECTLTVLDAWLAAV 1006 (2052)
Q Consensus 990 ~VR~aa~~aL~~i~~~~ 1006 (2052)
.+++.|.=+++.+...+
T Consensus 843 ~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 843 ATKDTARWAREQQKRQL 859 (861)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 78888888887776543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-20 Score=253.53 Aligned_cols=722 Identities=12% Similarity=0.080 Sum_probs=483.8
Q ss_pred hccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC--CChhHHHHHHHHHHHHH----------------h
Q 000146 100 VADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWV----------------E 161 (2052)
Q Consensus 100 v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~--~r~~tk~~A~~~~l~~~----------------e 161 (2052)
..+.+..++..|.+.|..|-+.. ...++..|++-..+ ..+.+|..|..++-.++ .
T Consensus 10 ~~s~d~~~r~~A~~~L~~~~~~~-------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~ 82 (876)
T 1qgr_A 10 TVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLA 82 (876)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHHHHHhcC-------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhcc
Confidence 34677778888888887654321 12333334433222 25778887776655443 2
Q ss_pred hh--hhhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCC--ChhHHHHHHHHHHHHHHh
Q 000146 162 LE--AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRW 237 (2052)
Q Consensus 162 ~~--~~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~--dk~VR~~a~~l~vely~~ 237 (2052)
+. .-..+-+.|+.++.+-.+++ ..+..++..+....+.. -....+++.+...+.+. +..+|..+..++..+..+
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~-~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~ 160 (876)
T 1qgr_A 83 IDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160 (876)
T ss_dssp SCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcc-cccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 21 12345566788888888888 88889999888876541 12457889999999998 999999999999999887
Q ss_pred hCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000146 238 IGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP 317 (2052)
Q Consensus 238 lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~ 317 (2052)
++++.+ ...-+..+..
T Consensus 161 ~~~~~~-----~~~~~~ll~~----------------------------------------------------------- 176 (876)
T 1qgr_A 161 IDPEQL-----QDKSNEILTA----------------------------------------------------------- 176 (876)
T ss_dssp SCHHHH-----GGGHHHHHHH-----------------------------------------------------------
T ss_pred cCHhhH-----HhHHHHHHHH-----------------------------------------------------------
Confidence 752211 1111111111
Q ss_pred ccccCcCccchhhhhcccC--ChHHHHHHHHHHHHHhcC-C-CCCCCCh-HHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Q 000146 318 VDILTPLEKSGFWEGVKAT--KWSERKDAVAELTKLAST-K-RIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLA 392 (2052)
Q Consensus 318 vdIl~kl~~~~f~~~l~s~--kWkeR~eaL~~L~~L~~~-~-ki~~~dy-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La 392 (2052)
+...+.+. +|..|..|++.|..++.. + .+....+ ..+++.+...+.|.+..|+..|+.|++.++
T Consensus 177 -----------l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 177 -----------IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp -----------HHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred -----------HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 11112222 466788888888776531 0 0111011 236777777788888999999999999999
Q ss_pred HHhhhcchhhhh-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc--------------------CCC-----HHHHHHH
Q 000146 393 RGLRTHFSGSSR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG--------------------CLN-----LVDVVED 446 (2052)
Q Consensus 393 ~~L~~~f~~~~~-~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~--------------------~~~-----l~~ll~~ 446 (2052)
....+.|.+|.. .+++.++..+++....|+..+.+.+..++... +.. +..+++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 325 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHH
Confidence 988888999999 99999999999999999999988888887641 011 2445555
Q ss_pred HHHHhh-------cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChh
Q 000146 447 VKTSVK-------NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP 519 (2052)
Q Consensus 447 l~~~L~-------~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~ 519 (2052)
++..+. +.+|.+|..+...|..+....+. ..++.++|.+...+.|.++.+|.+|..+++.+....+...
T Consensus 326 ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~ 401 (876)
T 1qgr_A 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQ 401 (876)
T ss_dssp HHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred HHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHH
Confidence 555553 34677777777777776655442 2245677777777777777788777777765543222111
Q ss_pred HHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCC
Q 000146 520 LERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPV 599 (2052)
Q Consensus 520 ~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~ 599 (2052)
+.++
T Consensus 402 ~~~~---------------------------------------------------------------------------- 405 (876)
T 1qgr_A 402 LKPL---------------------------------------------------------------------------- 405 (876)
T ss_dssp HHHH----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1111
Q ss_pred CCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccc---cch
Q 000146 600 KPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN---LDQ 676 (2052)
Q Consensus 600 k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~---~~~ 676 (2052)
+..++ +.++..|.+.+|..|..|+..+..+...... ...
T Consensus 406 -------------------------------------~~~~l-~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~ 447 (876)
T 1qgr_A 406 -------------------------------------VIQAM-PTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV 447 (876)
T ss_dssp -------------------------------------HHHHH-HHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred -------------------------------------HHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHH
Confidence 11111 3456667788899999999998888876432 122
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--------------CCchhhHHHHHHHHHHhhhch-----hh
Q 000146 677 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--------------KFPKKCVVLCLLGISERVADI-----KT 737 (2052)
Q Consensus 677 ~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~--------------~~~~~~~~~il~~LveKlgd~-----K~ 737 (2052)
..+.++..+.. .+.|. ..|...++.++..++..++ .....++..++|.|+..+.+. .+
T Consensus 448 ~l~~~l~~l~~--~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 448 YLAPLLQCLIE--GLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp THHHHHHHHHH--HTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTH
T ss_pred HHHHHHHHHHH--HHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhH
Confidence 34444444322 24554 7788888889988887643 123456788999998877653 57
Q ss_pred hHHHHHHHHHHHhhhChh------HHHHHHHHHHhh----------CCC----HHHHHHHHHHHHHHHHHhC-CCCC-Ch
Q 000146 738 RAHAMKCLTTFSEAVGPG------FIFERLYKIMKD----------HKN----PKVLSEGILWMVSAVEDFG-VSHL-KL 795 (2052)
Q Consensus 738 r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l~~----------~Kn----pKv~~e~L~~L~~~i~~fG-~~~l-~~ 795 (2052)
|..+.++|..++...+.+ .+++.++..+.. ..+ +.++..++.++..++..+| .... -+
T Consensus 525 r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 604 (876)
T 1qgr_A 525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS 604 (876)
T ss_dssp HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH
Confidence 888999999999987643 223333333221 111 5667778888888887766 2211 23
Q ss_pred HhHHHHHHhhCCCCCc--HHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccccccc
Q 000146 796 KDLIDFCKDTGLQSSA--AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 873 (2052)
Q Consensus 796 k~li~~l~~~gL~~~n--~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~ 873 (2052)
..+++.+... +.+.+ +.||..+..+++.+....|..+..|+..+-|.+
T Consensus 605 ~~l~~~l~~~-l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l----------------------------- 654 (876)
T 1qgr_A 605 DVVMASLLRM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFL----------------------------- 654 (876)
T ss_dssp HHHHHHHHHH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHH-HHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------------------------
Confidence 5677777776 77765 489999999999999888887776664433333
Q ss_pred CCCCCCCCCCCCcccccccccHHHHhhcCCC-ChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc--chHHH
Q 000146 874 SSVSSGGSDGLPREDISGKFTPTLVKSLESP-DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNL 950 (2052)
Q Consensus 874 ~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~-~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D--sN~~V 950 (2052)
+..+.+. +|.+|..++..+..++......+.+. ..+++..|...|.+ .+..+
T Consensus 655 ------------------------~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~~~ 709 (876)
T 1qgr_A 655 ------------------------GIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF-CDEVMQLLLENLGNENVHRSV 709 (876)
T ss_dssp ------------------------HHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHTCTTSCGGG
T ss_pred ------------------------HHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHhCCccccHHh
Confidence 3333333 67889999999999987544445543 47888888888876 46789
Q ss_pred HHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC------------
Q 000146 951 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH------------ 1007 (2052)
Q Consensus 951 ~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k-----------~~VR~aa~~aL~~i~~~~~------------ 1007 (2052)
+..++.+++.++..+|..|.+|+..++|.+++.+.++. ..+|..+..++..++...+
T Consensus 710 ~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~ 789 (876)
T 1qgr_A 710 KPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVML 789 (876)
T ss_dssp HHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGG
T ss_pred hHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHH
Confidence 99999999999999999999999999999999987653 3799999999998887653
Q ss_pred chhhHHHHHHHH----hcCccChhHHHHHHHHHHHHhccCCC-C--Cc-hhhhHHHHHh-hcCCCCHHHHHHHHHHHHHH
Q 000146 1008 LDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSG-F--PD-AAHLLKPASI-AMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1008 l~~ll~~l~~~L----~~~k~np~~R~~~l~~L~~~l~~~~~-~--~~-~~~ll~pl~~-~L~D~~~dVRkaA~~~L~~l 1078 (2052)
+..+++.+...+ .++..+..+|..++..|...+..++. . +. ...++.+++. ++.|.+++||.+|..+++.+
T Consensus 790 ~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 790 VQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp SGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 233455555555 33311467898888888877666543 1 11 2356778888 99999999999999999887
Q ss_pred HHH
Q 000146 1079 LRA 1081 (2052)
Q Consensus 1079 ~~~ 1081 (2052)
.+.
T Consensus 870 ~~~ 872 (876)
T 1qgr_A 870 RKL 872 (876)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=245.17 Aligned_cols=228 Identities=18% Similarity=0.259 Sum_probs=210.6
Q ss_pred CCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc-cchHHHHHHHHHHHH
Q 000146 881 SDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLG 959 (2052)
Q Consensus 881 ~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~-DsN~~V~~~Al~~l~ 959 (2052)
+|+++++||.++|++.+++.+.|++|++|++|+..|..++..+ ..+....|.+++..|+.++. |.|..|+..|+.+++
T Consensus 4 ~d~~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~ 82 (242)
T 2qk2_A 4 MDLLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLA 82 (242)
T ss_dssp HHTTSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHhCCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999864 34555567999999999995 999999999999999
Q ss_pred HHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHH
Q 000146 960 AVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1039 (2052)
Q Consensus 960 ~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~ 1039 (2052)
.|+..+|+.|.+|+..++|.++.+++|+++.||+++..+|.+++..++++.++|.+...|.++ ++.+|.+++.||..+
T Consensus 83 ~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 83 LLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETALFIARA 160 (242)
T ss_dssp HHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987 799999999999998
Q ss_pred hccCCCC----CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccC
Q 000146 1040 LTGLSGF----PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGA 1111 (2052)
Q Consensus 1040 l~~~~~~----~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~ 1111 (2052)
+..+... ..+..+++.+..+|+|++++||++|..|++.++.++|++.+.+++..|++.++++|.++++++..
T Consensus 161 l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~v 236 (242)
T 2qk2_A 161 LTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAEI 236 (242)
T ss_dssp HTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 8876421 34566777799999999999999999999999999999999999999999999999999998764
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-19 Score=247.47 Aligned_cols=672 Identities=14% Similarity=0.125 Sum_probs=444.4
Q ss_pred hhHHHHHhccC--cHHHHHHHHHHHHHHHHHhh-hhhhhhhHHHHHHHHHhhcC-C--ChhHHHHHHHHHHHHHhh-hh-
Q 000146 93 GPLFKKTVADS--NAPVQDKALDALIAYLKAAD-ADAGRYAKEVCDAIAAKCLT-G--RPKTVEKAQAVFMLWVEL-EA- 164 (2052)
Q Consensus 93 ~~l~~k~v~Ds--N~~aqe~gl~al~~~l~~~~-~~~~~~~~~vi~~LieK~L~-~--r~~tk~~A~~~~l~~~e~-~~- 164 (2052)
.+.+.+.+.+. +..+++.++.+|..+++..+ ..+..+...+++.++. ++. . ...+|..|++++..+++. +.
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~-~l~~~~~~~~vr~~a~~~l~~~~~~~~~~ 208 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQ-GMRKEEPSNNVKLAATNALLNSLEFTKAN 208 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHH-HHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677888 99999999999999998753 2344566667766554 465 3 478999999999887754 21
Q ss_pred h------hhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcC-hH-HHHhhhhhhhCCCChhHHHHHHHHHHHHHH
Q 000146 165 V------DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PK-RILKMLPELFDHQDQNVRASSKGLTLELCR 236 (2052)
Q Consensus 165 ~------~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k-~il~~l~~ll~~~dk~VR~~a~~l~vely~ 236 (2052)
. +.+++.+...+.+..++++..++.+|..++..++....+ +. .+++.+...+.+.+..||..|.+++..+.+
T Consensus 209 ~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 1 236666677777788999999999999999988764322 33 677888888899999999999998877765
Q ss_pred hhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCC-ccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 000146 237 WIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPT-RKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELV 315 (2052)
Q Consensus 237 ~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~-R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~ 315 (2052)
... .+ . . +-+...+.-..+..+. .+.+..-. .. +
T Consensus 289 ~~~------~~-~------~-~~~~~~~~~~~~~~~~~~~~~~~~~-~l------------------------------l 323 (876)
T 1qgr_A 289 EEM------DL-A------I-EASEAAEQGRPPEHTSKFYAKGALQ-YL------------------------------V 323 (876)
T ss_dssp HHH------HH-H------H-HHHHHHHHSSCCSSCCCCHHHHHHH-HH------------------------------H
T ss_pred HHH------hH-h------h-hhccccccCCCccchhHHHHHHHHH-HH------------------------------h
Confidence 431 00 0 0 0011111100000010 01110000 00 0
Q ss_pred CcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHH
Q 000146 316 DPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAST-KRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARG 394 (2052)
Q Consensus 316 ~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~-~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~ 394 (2052)
+ .++..+. ...+...+.+|..|+.|...|..++.. + ..-+..+++.+...+.|.+..++..|+.+++.++.+
T Consensus 324 ~--~ll~~l~--~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 324 P--ILTQTLT--KQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (876)
T ss_dssp H--HHHHHTT--CCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred H--HHHHHhh--cccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence 0 0000000 000001245799999999999887742 2 123668888888999999999999999999999998
Q ss_pred hh-hcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 000146 395 LR-THFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG------CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 467 (2052)
Q Consensus 395 L~-~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~------~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~ 467 (2052)
.. ..+.+|...++|.++..++|.++.||.++..++..++... ...+..+++.+...+.+. +.+|..++..|.
T Consensus 397 ~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~ 475 (876)
T 1qgr_A 397 PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFS 475 (876)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 87 4578899999999999999999999999999999999861 135788899999999874 999999999999
Q ss_pred HHHHhcC-------------hhHHHHhhhhHHHHHHHhhcCC---ChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHH
Q 000146 468 FCIETSS-------------KAAVLKVHKDYVPICMECLNDG---TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 531 (2052)
Q Consensus 468 ~~l~~~~-------------~~~l~~~l~~l~p~l~k~l~Ds---~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k 531 (2052)
.++.... ...+.++++.++|.+..++.+. +..+|..+.++++.+...+|.. +.+++..+-+.-
T Consensus 476 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l 554 (876)
T 1qgr_A 476 SLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD-CYPAVQKTTLVI 554 (876)
T ss_dssp HHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST-THHHHHHHHHHH
T ss_pred HHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh-hHHHHHHHHHHH
Confidence 8887642 1235678899999999999876 4689999999999999999964 566666665544
Q ss_pred HHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000146 532 RNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQ 611 (2052)
Q Consensus 532 ~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~ 611 (2052)
...+...+....
T Consensus 555 ~~~l~~~~~~~~-------------------------------------------------------------------- 566 (876)
T 1qgr_A 555 MERLQQVLQMES-------------------------------------------------------------------- 566 (876)
T ss_dssp HHHHHHHHTTTT--------------------------------------------------------------------
T ss_pred HHHHHHHHHHHh--------------------------------------------------------------------
Confidence 444443321000
Q ss_pred cCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHH-HHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCC
Q 000146 612 ETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWK-ERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPG 690 (2052)
Q Consensus 612 ~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk-~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg 690 (2052)
...+.++-+ .|. .|..++.-+..++...
T Consensus 567 --------------~~~~~~d~~------------------~~~~~~~~~~~~l~~l~~~~------------------- 595 (876)
T 1qgr_A 567 --------------HIQSTSDRI------------------QFNDLQSLLCATLQNVLRKV------------------- 595 (876)
T ss_dssp --------------SCCSTTHHH------------------HHHHHHHHHHHHHHHHHTTS-------------------
T ss_pred --------------ccCChhhHH------------------HHHHHHHHHHHHHHHHHHHh-------------------
Confidence 000000000 000 0111122222111111
Q ss_pred CcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhch----hhhHHHHHHHHHHHhhhCh------hHHHHH
Q 000146 691 WSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADI----KTRAHAMKCLTTFSEAVGP------GFIFER 760 (2052)
Q Consensus 691 ~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~----K~r~~a~e~L~~l~E~~~~------~~Vl~~ 760 (2052)
.. .-...++..++|.++.-+.+. .++..+..++..++...+. ..+++.
T Consensus 596 -~~---------------------~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 653 (876)
T 1qgr_A 596 -QH---------------------QDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPF 653 (876)
T ss_dssp -CH---------------------HHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHH
T ss_pred -Ch---------------------hhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 00 000112233334333333322 4566777777777765443 234555
Q ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC-hHhHHHHHHhhCCCC--CcHHHHHHHHHHHHHHHHhhChhhHhhh
Q 000146 761 LYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGLQS--SAAATRNATIKLLGALHKFVGPDIKGFL 837 (2052)
Q Consensus 761 L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~-~k~li~~l~~~gL~~--~n~~VR~aA~~ll~~Ly~~~G~~l~~~L 837 (2052)
++..+....++.+|..++..+..++...|....+ +..+++.+... +.+ .+..||..+..+++.+...+|+.+..|+
T Consensus 654 l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~-l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l 732 (876)
T 1qgr_A 654 LGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLEN-LGNENVHRSVKPQILSVFGDIALAIGGEFKKYL 732 (876)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHH-HTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH
T ss_pred HHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-hCCccccHHhhHHHHHHHHHHHHHhchhHHHHH
Confidence 5555533448999999999999999887753111 35667767665 766 4678999999999999999999988888
Q ss_pred hhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHH
Q 000146 838 ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVN 917 (2052)
Q Consensus 838 ~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~ 917 (2052)
..+-|.+.+.+. ... ++ +| ++..+ -....|..+++.+.
T Consensus 733 ~~~~~~l~~~~~-----~~~-~~--------------------~d------------~~~~~----~~~~~r~~~~~~~~ 770 (876)
T 1qgr_A 733 EVVLNTLQQASQ-----AQV-DK--------------------SD------------YDMVD----YLNELRESCLEAYT 770 (876)
T ss_dssp HHHHHHHHHHHT-----CCC-CT--------------------TC------------HHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----ccC-CC--------------------CC------------hHHHH----HHHHHHHHHHHHHH
Confidence 666555444331 000 00 00 01000 02357888899998
Q ss_pred HHHHhccc----------cCCCCChhhHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHhCh-hhHHh-hhHHHHHHHH-
Q 000146 918 KILEEANK----------RIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMGP-AVEKS-SKGVLSDILK- 982 (2052)
Q Consensus 918 ~ll~~a~~----------~I~~~~~~eL~~aL~~rL~Ds--N~~V~~~Al~~l~~la~alg~-~~~~~-~~~llp~ll~- 982 (2052)
.++..... .+.+. ...++..+.....|. +..|+..|+.+++.++..+|. .+.+| ...+++.++.
T Consensus 771 ~i~~~~~~~~~~~~~~~~~~~~~-~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~ 849 (876)
T 1qgr_A 771 GIVQGLKGDQENVHPDVMLVQPR-VEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTE 849 (876)
T ss_dssp HHHHHHHCSSSSCCGGGGGSGGG-HHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHccCcccccchHHHHHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHH
Confidence 88875322 22232 366777776666777 789999999999999999999 88888 6789999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHHH
Q 000146 983 CLGDNKKHMRECTLTVLDAWLA 1004 (2052)
Q Consensus 983 ~l~D~k~~VR~aa~~aL~~i~~ 1004 (2052)
.+.|.++.+|++|..+++.+.+
T Consensus 850 ~l~~~~~~~r~~a~~a~~~~~~ 871 (876)
T 1qgr_A 850 GRRSKTNKAKTLARWATKELRK 871 (876)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHH
T ss_pred HhhcCCHhHHHHHHHHHHHHHH
Confidence 9999999999999999998875
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-23 Score=248.22 Aligned_cols=219 Identities=17% Similarity=0.213 Sum_probs=165.6
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHH------HHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC---
Q 000146 645 TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEI------LVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK--- 715 (2052)
Q Consensus 645 l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~------Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~--- 715 (2052)
+.++|.|++||+|++||++|.+++..........+. +...+.+ .++|+|++|++.+++++..++..++.
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk--~l~DsN~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQ--YITDSNVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHH--HTTCSSHHHHHHHHHHHHHHHTTCC---C
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 678999999999999999999999874322111111 1122221 36799999999999999999986543
Q ss_pred ---CchhhHHHHHHHHHHh-hhchh--hhHHHHHHHHHHHhhhCh-hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHh
Q 000146 716 ---FPKKCVVLCLLGISER-VADIK--TRAHAMKCLTTFSEAVGP-GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDF 788 (2052)
Q Consensus 716 ---~~~~~~~~il~~LveK-lgd~K--~r~~a~e~L~~l~E~~~~-~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~f 788 (2052)
+...++..++|.|++| +||.| ++..+.++|..+++...+ ..+++.++.++ ++||||++.+++.||..++.+|
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~f 170 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIPFF-EKKLPKLIAAAANCVYELMAAF 170 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHh
Confidence 1235678899999999 68865 789999999999998664 56677777774 9999999999999999999999
Q ss_pred CCCCCChHhH----HHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhh----HhhhhhccHHHHHHHHHHHhcCCCCCC
Q 000146 789 GVSHLKLKDL----IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDI----KGFLADVKPALLSALDAEYEKNPFEGT 860 (2052)
Q Consensus 789 G~~~l~~k~l----i~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l----~~~L~~lkP~ll~~Le~efeK~~~~~~ 860 (2052)
|...++.+.. ++.+.++ ++|+|++||++|+.++++||+|+|+.+ ..|+++++|+++++|+++|+|+.++++
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~-l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k~~~~~~ 249 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQL-AGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAKVGDEPS 249 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHH-HTCSSHHHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSCCCC---
T ss_pred CCCcCCchhHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHhcCCCCC
Confidence 9998887654 4456666 999999999999999999999999865 368899999999999999999988766
Q ss_pred CCCcccc
Q 000146 861 VVPKKTV 867 (2052)
Q Consensus 861 p~p~r~~ 867 (2052)
|++.+..
T Consensus 250 ~~~~~~~ 256 (278)
T 4ffb_C 250 SSKMLFE 256 (278)
T ss_dssp ----CCH
T ss_pred CCCcchh
Confidence 6665543
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-22 Score=229.57 Aligned_cols=218 Identities=19% Similarity=0.241 Sum_probs=192.8
Q ss_pred HHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHH
Q 000146 631 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 709 (2052)
Q Consensus 631 ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l 709 (2052)
+++...+...+++++..+|+|++||.|++|++.|.+.+.+.. ......+.+++|+.. ++.|+|++|...+|+++..+
T Consensus 37 ~~L~~~~~~~~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~l--r~~d~N~~v~~~~L~~L~~l 114 (266)
T 2of3_A 37 SQLQTLLGNQAKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL--RFFETNPAALIKVLELCKVI 114 (266)
T ss_dssp HHHHHHHHTTBCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHH--HTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH
Confidence 455677788899999999999999999999999999987632 233346778998853 57899999999999999999
Q ss_pred HHHc----CCCchhhHHHHHHHHHHhhhchh--hhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 000146 710 AATA----TKFPKKCVVLCLLGISERVADIK--TRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVS 783 (2052)
Q Consensus 710 ~~~~----~~~~~~~~~~il~~LveKlgd~K--~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~ 783 (2052)
+..+ ..++...+..++|.|++|+||+| +|+.+.++|..+++.+++..++..++.++ .+||+|+|.+|+.++..
T Consensus 115 ~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~l~~ 193 (266)
T 2of3_A 115 VELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQRSECLLVIEY 193 (266)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHHHHHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-ccCCHHHHHHHHHHHHH
Confidence 8765 34677778999999999999986 89999999999999999999999999975 99999999999999999
Q ss_pred HHHHhCCCCCChHhHH---HHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcC
Q 000146 784 AVEDFGVSHLKLKDLI---DFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 855 (2052)
Q Consensus 784 ~i~~fG~~~l~~k~li---~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~ 855 (2052)
+++.||.. . ...+ +.+.++ ++|+|++||++|+++++++|+++|+.+..++++++|..++.|++.|.+.
T Consensus 194 li~~~G~~--~-~~~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 194 YITNAGIS--P-LKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEGDQMWKAAGRMADKDKSLVEERIKRT 264 (266)
T ss_dssp HHHHHCSG--G-GGGGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC--c-cccccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 99999986 2 2345 777777 9999999999999999999999999999999999999999999999764
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-20 Score=243.23 Aligned_cols=556 Identities=13% Similarity=0.105 Sum_probs=387.7
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 722 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 722 (2052)
..++..|.|.+|..|..|++.+.......++. ...+.++.+|... .|.+..|...+.+.+..+....+. .....
T Consensus 13 ~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~-~~~~~l~~~L~~~---~d~~~~vr~~~~~~L~~~~~~~~~--~~~~~ 86 (588)
T 1b3u_A 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRSELLPFLTDT---IYDEDEVLLALAEQLGTFTTLVGG--PEYVH 86 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHHTHHHHHHHT---CCCCHHHHHHHHHHHTTCSGGGTS--GGGGG
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHHhCHH-HHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHhccCc--HHHHH
Confidence 35788999999999999999998877654322 2234456666432 266677888777777654443221 22344
Q ss_pred HHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHH---HhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHh
Q 000146 723 LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKI---MKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKD 797 (2052)
Q Consensus 723 ~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~---l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~ 797 (2052)
.+++.|..-+.| ..+|..|.++|..+++..+++.+...+++. +..+.++.+|..++..+..+...++.. ..+.
T Consensus 87 ~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~--~~~~ 164 (588)
T 1b3u_A 87 CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--VKAE 164 (588)
T ss_dssp GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--HHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH--HHHH
Confidence 566666544444 468999999999999988876554444433 346778999999999888877554432 2456
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCC
Q 000146 798 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 877 (2052)
Q Consensus 798 li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~ 877 (2052)
+++.+..+ +.+.++.||.+|...++.+....|... +.
T Consensus 165 l~~~l~~l-~~d~~~~VR~~a~~~l~~l~~~~~~~~--~~---------------------------------------- 201 (588)
T 1b3u_A 165 LRQYFRNL-CSDDTPMVRRAAASKLGEFAKVLELDN--VK---------------------------------------- 201 (588)
T ss_dssp HHHHHHHH-HTCSCHHHHHHHHHHHHHHHHTSCHHH--HH----------------------------------------
T ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhcHHh--HH----------------------------------------
Confidence 88888887 899999999999999999988776421 00
Q ss_pred CCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHH
Q 000146 878 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLIT 957 (2052)
Q Consensus 878 ~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~ 957 (2052)
..+.+.+...+.|.+|.+|..|++.+..+....+.. .....+++.+...+.|.+..|+..++.+
T Consensus 202 -------------~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~ 265 (588)
T 1b3u_A 202 -------------SEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADK 265 (588)
T ss_dssp -------------HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHT
T ss_pred -------------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 012345666678889999999999999988642110 1124577788888899999999999999
Q ss_pred HHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhHHHHHHHHhcCccChhHH
Q 000146 958 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPYVTTALTDAKLGAEGR 1029 (2052)
Q Consensus 958 l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l--------~~ll~~l~~~L~~~k~np~~R 1029 (2052)
++.++...|+. .+...++|.++..+.|..+.||.++..+|..++..++. +.++|.+...+.++ ++.+|
T Consensus 266 l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~--~~~vR 341 (588)
T 1b3u_A 266 FTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--NQHVK 341 (588)
T ss_dssp HHHHHHHHCHH--HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHH
T ss_pred HHHHHHHhCcc--cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC--CHHHH
Confidence 99999998875 35677899999999999999999999999999998863 34566666666655 57778
Q ss_pred HHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000146 1030 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1109 (2052)
Q Consensus 1030 ~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~ 1109 (2052)
..++..+.......+.......+++.+..++.|.+++||.++..++..+...+|.+.+.+.
T Consensus 342 ~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~------------------- 402 (588)
T 1b3u_A 342 SALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS------------------- 402 (588)
T ss_dssp HHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHH-------------------
Confidence 7777666554332221111223444466777888888888888777776666654311100
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhccccCCCchHHHhhhhhccc
Q 000146 1110 GASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRF 1189 (2052)
Q Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~ 1189 (2052)
T Consensus 403 -------------------------------------------------------------------------------- 402 (588)
T 1b3u_A 403 -------------------------------------------------------------------------------- 402 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCcChhhhHHHHHHHHHHHHHhhcCccHHHHHH
Q 000146 1190 KFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLK 1269 (2052)
Q Consensus 1190 ~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~~i~~lDlllk~l~lr~~dtN~~vl~k 1269 (2052)
+-+.+...+.+.+|+.|..+++.|..+....+.+.. .+.++..+...+.|++..|-..
T Consensus 403 --------------------~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~Vr~~ 460 (588)
T 1b3u_A 403 --------------------LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF--DEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp --------------------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC--CHHHHHHHHHGGGCSSHHHHHH
T ss_pred --------------------HHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHH--HHHHHHHHHHHhcCCcHHHHHH
Confidence 001122234456777777776666654432222111 1122333333368999999999
Q ss_pred HHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCCChHHHHHHHHHHHHHHhhcCCc----cccHHHHHhhhcCCChh
Q 000146 1270 VLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA----TKTLPYILEGLRSKNNR 1345 (2052)
Q Consensus 1270 ~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~----skvf~~l~~gl~sKN~r 1345 (2052)
++..+..++..+... +....++|.|+.-+.|....+|...-..+..+...++. ..++|.|+..++..++.
T Consensus 461 a~~~l~~l~~~~~~~------~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~ 534 (588)
T 1b3u_A 461 ATSNLKKLVEKFGKE------WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVAN 534 (588)
T ss_dssp HHHHHHHHHHHHCHH------HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHhCch------hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCch
Confidence 999998887776542 23567899988777788888888877777777665554 47888888899999999
Q ss_pred hHHHHHHHHHHHHHhhCCCcccccchHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000146 1346 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATG 1397 (2052)
Q Consensus 1346 ~R~ecl~~l~~li~~~G~~~~~~~K~l~~ia~~i~drd~~VR~AAl~~l~~~ 1397 (2052)
+|..++..++.++..+|-.. .....++.+..+..|+|..||.+|..+|..+
T Consensus 535 Vr~~a~~~l~~l~~~~~~~~-~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 535 VRFNVAKSLQKIGPILDNST-LQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhchhh-hHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 99999999999988877532 1123347777888999999999999998753
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-10 Score=147.15 Aligned_cols=378 Identities=12% Similarity=0.069 Sum_probs=269.5
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc----------
Q 000146 644 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA---------- 713 (2052)
Q Consensus 644 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~---------- 713 (2052)
.++..+.+.+-..|.+|-+.|.++-....+ .....|+..+.. .+.+..|.+.+.-++..++...
T Consensus 5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~~--~~~~~L~~il~~----~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~ 78 (462)
T 1ibr_B 5 TILEKTVSPDRLELEAAQKFLERAAVENLP--TFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 78 (462)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhhChH--HHHHHHHHHHHc----CCCChHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 456777888999999999999875432111 123445555542 2346778888888888776421
Q ss_pred --CCCchhhHHHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhChh----HHHHHHHHHHhhCC--CHHHHHHHHHHHHH
Q 000146 714 --TKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG----FIFERLYKIMKDHK--NPKVLSEGILWMVS 783 (2052)
Q Consensus 714 --~~~~~~~~~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~----~Vl~~L~~~l~~~K--npKv~~e~L~~L~~ 783 (2052)
..+.......+-..|++.+.+ .++ ..+..++..++....+. -+++.++..+ .+. ++.++..++.+|..
T Consensus 79 ~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l-~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 79 RWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANV-TNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHH-HCTTCCHHHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 223444445566667777766 357 77888888888876553 3667777765 455 89999999999999
Q ss_pred HHHHhCCCCC--ChHhHHHHHHhhCCCCC--cHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000146 784 AVEDFGVSHL--KLKDLIDFCKDTGLQSS--AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 859 (2052)
Q Consensus 784 ~i~~fG~~~l--~~k~li~~l~~~gL~~~--n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~ 859 (2052)
+.+++....+ ....+++.+... +.+. ++.||.+|.++++.+-.++++.+.. . .+
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~-l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~-------~-------~~------- 214 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDK-------E-------SE------- 214 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS-------H-------HH-------
T ss_pred HHHhCCchhhHhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh-------h-------HH-------
Confidence 9998743222 245677777776 8888 8999999999887764322111100 0 00
Q ss_pred CCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChh-hHHHH
Q 000146 860 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTG-ELFGG 938 (2052)
Q Consensus 860 ~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~-eL~~a 938 (2052)
...+.+.+...+.+.++.+|..+++.+..++......+.+. +. +++..
T Consensus 215 ------------------------------~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~ 263 (462)
T 1ibr_B 215 ------------------------------RHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAI 263 (462)
T ss_dssp ------------------------------HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHH
T ss_pred ------------------------------HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 00012233344567789999999999999998655555554 46 89998
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHh---------------------ChhhHHhhhHHHHHHHHHhCCC-------cHH
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAM---------------------GPAVEKSSKGVLSDILKCLGDN-------KKH 990 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~al---------------------g~~~~~~~~~llp~ll~~l~D~-------k~~ 990 (2052)
+...+.|.+..|+..|+..+..++... ..-+.+|+..++|.+++.+.+. ...
T Consensus 264 ~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~ 343 (462)
T 1ibr_B 264 TIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN 343 (462)
T ss_dssp HHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCS
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccch
Confidence 888899999999999999999998763 2234567889999999988643 447
Q ss_pred HHHHHHHHHHHHHHhcCchhhHH----HHHHHHhcCccChhHHHHHHHHHHHHhccCCC---CCchhhhHHHHHhhcCCC
Q 000146 991 MRECTLTVLDAWLAAVHLDKMVP----YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDK 1063 (2052)
Q Consensus 991 VR~aa~~aL~~i~~~~~l~~ll~----~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~ 1063 (2052)
+|.+|..+|..++..+| +.+++ .+...|.+. ++..|..++..+......... .+.+..+++.++.+|.|+
T Consensus 344 ~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 344 PCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP 420 (462)
T ss_dssp HHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999998 44444 445555554 688999999999876654432 234566777799999999
Q ss_pred CHHHHHHHHHHHHHHHHHcChh
Q 000146 1064 SSDVRKAAEACIVEILRAGGQE 1085 (2052)
Q Consensus 1064 ~~dVRkaA~~~L~~l~~~~G~e 1085 (2052)
++.||.+|..+|+.+...+|..
T Consensus 421 ~~~Vr~~a~~~l~~~~~~~~~~ 442 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICELLPEA 442 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGG
T ss_pred CHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988863
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.1e-10 Score=144.82 Aligned_cols=338 Identities=14% Similarity=0.099 Sum_probs=239.1
Q ss_pred cHHHHHHHHHHHHHHHHHhh-----------hhhh-hhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhh----h
Q 000146 104 NAPVQDKALDALIAYLKAAD-----------ADAG-RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAV----D 166 (2052)
Q Consensus 104 N~~aqe~gl~al~~~l~~~~-----------~~~~-~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~----~ 166 (2052)
+..+...|...|-.+++... .... .....+-..|++. |. ..+.+ ..+..++..+...+-+ .
T Consensus 50 ~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~-l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~ 127 (462)
T 1ibr_B 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQT-LGTETYRP-SSASQCVAGIACAEIPVNQWP 127 (462)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-TTCCCSSS-CSHHHHHHHHHHHHGGGTCCT
T ss_pred ChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHH-hCCCCchh-hHHHHHHHHHHHHhccccccH
Confidence 67888888888887764321 0011 1122344455554 44 44556 6666666666655322 4
Q ss_pred hHHHHHHHHhhcc--ChhhHHHHHHHHHHHHHHhCCCCc--ChHHHHhhhhhhhCCC--ChhHHHHHHHHHHHHHHhhCC
Q 000146 167 VFLDVMEKAIKNK--VAKAVVPAIDVMFQALSEFGAKII--PPKRILKMLPELFDHQ--DQNVRASSKGLTLELCRWIGK 240 (2052)
Q Consensus 167 ~v~e~Ll~~l~~K--~PKvv~~~l~~L~~~l~~FG~~~i--~~k~il~~l~~ll~~~--dk~VR~~a~~l~vely~~lG~ 240 (2052)
.+++.|...+.+. +|.++.+++.+|..+.+.+....+ ....+++.+..++++. +..||..|...+..+..+++
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~- 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK- 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH-
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH-
Confidence 6788888888887 899999999999999998743222 2456888899999998 78999999988777654332
Q ss_pred chhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000146 241 DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDI 320 (2052)
Q Consensus 241 ~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdI 320 (2052)
... +. .. .... +
T Consensus 207 ----~~~-~~---~~---~~~~---------------------------------------------------------l 218 (462)
T 1ibr_B 207 ----ANF-DK---ES---ERHF---------------------------------------------------------I 218 (462)
T ss_dssp ----HHH-TS---HH---HHHH---------------------------------------------------------H
T ss_pred ----Hhh-hh---hH---HHHH---------------------------------------------------------H
Confidence 111 00 00 0000 0
Q ss_pred cCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCCCCCChH-HHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHh---
Q 000146 321 LTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFT-EVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--- 395 (2052)
Q Consensus 321 l~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~dy~-~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L--- 395 (2052)
+ ..+.+.+.+.++..|..+++.|..++. .++.....+. .++..+...+.|.+..|+..|+..+..++...
T Consensus 219 ~-----~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~ 293 (462)
T 1ibr_B 219 M-----QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL 293 (462)
T ss_dssp H-----HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 0 011112334556778899999988873 4444334455 78888888888999999999999999998764
Q ss_pred ---------------h---hcchhhhhhHHHHHHHHhcc-------CcHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHH
Q 000146 396 ---------------R---THFSGSSRFLLPVLLEKLKE-------KKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKT 449 (2052)
Q Consensus 396 ---------------~---~~f~~~~~~llp~LL~klkd-------kK~~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~ 449 (2052)
+ .-+.+|...++|.++..+.+ ....+|.++..+|..++.. +..-++.+++.+..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~ 373 (462)
T 1ibr_B 294 AIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKE 373 (462)
T ss_dssp HHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 12356778999999998854 3457899999999999986 11124566677777
Q ss_pred HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC
Q 000146 450 SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM 517 (2052)
Q Consensus 450 ~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge 517 (2052)
.+++.+|.+|..++..|..+.+.+....+.++++.++|.+..++.|+++.||.+|+.+++.+...+|.
T Consensus 374 ~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 374 HIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 88899999999999999998876654445567789999999999999999999999999999999885
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-08 Score=135.38 Aligned_cols=176 Identities=14% Similarity=0.186 Sum_probs=130.3
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 407 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 407 (2052)
++-+.+.+.+=..|++++..+..+..... +...++..+.+.+.+.+..+...+...+..+++.- ...+..++
T Consensus 17 ~i~~~L~~~~~~~k~~~~~kli~~~~~G~----d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~l~~ 88 (591)
T 2vgl_B 17 ELKAELNNEKKEKRKEAVKKVIAAMTVGK----DVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ----PDMAIMAV 88 (591)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHTTC----CCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS----HHHHHTTH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----chHHHHHH
Confidence 45666778888889999998876542211 33444555666788999999988888888876641 12355677
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVP 487 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p 487 (2052)
..+.+-+.++++.+|..|..+|..+.. ..-.+.+++.+...+.+.+|.||..++..+.++....+.. +.. ..+++
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~~--~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~-~~~--~~~~~ 163 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIRV--DKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM-VED--QGFLD 163 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCCS--GGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC-HHH--HHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh-ccc--ccHHH
Confidence 888888999999999777555544321 1224567777889999999999999999999988865432 211 36889
Q ss_pred HHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 488 ICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 488 ~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
.+..+|+|.++.||.+|..+|..+...-+
T Consensus 164 ~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 164 SLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999988776543
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.15 E-value=7.5e-08 Score=127.50 Aligned_cols=387 Identities=11% Similarity=0.106 Sum_probs=252.5
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 722 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 722 (2052)
.++.+.|.+.+-..|.+++..+.-....+.+.......+++ -+.++|+.+.+.+.-.+..+++.. ...+-
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~------l~~s~~~~~Krl~yl~l~~~~~~~----~e~~~ 85 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVN------CMQTDNLELKKLVYLYLMNYAKSQ----PDMAI 85 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHH------TTSSSCHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCCChHHHHHHHHH------HhCCCCHHHHHHHHHHHHHHcccC----chHHH
Confidence 35677888889999999999998655444333222222333 256788888888877777776642 22334
Q ss_pred HHHHHHHHhhhch--hhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHH
Q 000146 723 LCLLGISERVADI--KTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLID 800 (2052)
Q Consensus 723 ~il~~LveKlgd~--K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~ 800 (2052)
.+++.+..-+.|+ -+|..|..+|..+....-...+++.+...+ .+++|-||..++..+..+... +...+.-..+++
T Consensus 86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L-~d~~~~VRk~A~~al~~i~~~-~p~~~~~~~~~~ 163 (591)
T 2vgl_B 86 MAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCL-KDEDPYVRKTAAVCVAKLHDI-NAQMVEDQGFLD 163 (591)
T ss_dssp TTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHS-SCSCHHHHHHHHHHHHHHHHS-SCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHhh-ChhhcccccHHH
Confidence 4556666666663 468777544444332222234555566664 799999999999999998873 333332235888
Q ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHHHhhChh---------hHhhh---hhccHHHHHHHHHHHhcCCCCCCCCCccccc
Q 000146 801 FCKDTGLQSSAAATRNATIKLLGALHKFVGPD---------IKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKTVR 868 (2052)
Q Consensus 801 ~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~---------l~~~L---~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r 868 (2052)
.+..+ |.+.|+.||.+|..+++.+....+.. +...+ .+..|-.+-.+-+-+.+....
T Consensus 164 ~l~~l-L~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~---------- 232 (591)
T 2vgl_B 164 SLRDL-IADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPK---------- 232 (591)
T ss_dssp HHHHT-TSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCC----------
T ss_pred HHHHH-hCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCC----------
Confidence 89998 99999999999999999987654322 11111 111221111111222222100
Q ss_pred cccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccC--CCCChh----hHHHHHHhh
Q 000146 869 ASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRI--QPAGTG----ELFGGLRGR 942 (2052)
Q Consensus 869 ~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I--~~~~~~----eL~~aL~~r 942 (2052)
+..+ ...+-+.+...+.+.++.+|.+|+..+..+. ..+ .+..+. .+...|..
T Consensus 233 ----------------~~~~-~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~----~~~~~~~~~~~~~~~~~~~~L~~- 290 (591)
T 2vgl_B 233 ----------------DDRE-AQSICERVTPRLSHANSAVVLSAVKVLMKFL----ELLPKDSDYYNMLLKKLAPPLVT- 290 (591)
T ss_dssp ----------------SHHH-HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSC----CSCCBTTBSHHHHHHHTHHHHHH-
T ss_pred ----------------ChHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHh----hccCCCHHHHHHHHHHHHHHHHH-
Confidence 0000 1223345566688899999999999887653 222 122222 33344443
Q ss_pred hccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC
Q 000146 943 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA 1022 (2052)
Q Consensus 943 L~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~ 1022 (2052)
|.+++.+|+..|+..++.++..-...+.++.+.+ +..+.|. ..||..+.+.|..++...+++.+++.+...+.+.
T Consensus 291 L~~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~----~~~~~d~-~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~ 365 (591)
T 2vgl_B 291 LLSGEPEVQYVALRNINLIVQKRPEILKQEIKVF----FVKYNDP-IYVKLEKLDIMIRLASQANIAQVLAELKEYATEV 365 (591)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTT----SCCTTSC-HHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS
T ss_pred HhcCCccHHHHHHHHHHHHHHhChHHHHHHHHhh----eeccCCh-HHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC
Confidence 3457889999999999999988766666665543 2233555 8899999888888777667788888888888765
Q ss_pred ccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1023 KLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1023 k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
+.+.|.+++.++..+..+++ +.....+..++..+.|....|++.+..++..+....+
T Consensus 366 --d~~~r~~~v~aI~~la~~~~--~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p 422 (591)
T 2vgl_B 366 --DVDFVRKAVRAIGRCAIKVE--QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP 422 (591)
T ss_dssp --CHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC
T ss_pred --CHHHHHHHHHHHHHHHHhCh--hHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc
Confidence 58899999999988766543 2234566668888999999999998888777766554
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.9e-10 Score=152.50 Aligned_cols=195 Identities=16% Similarity=0.209 Sum_probs=166.4
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCC-CCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHh--hhcchhhhhh
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTK-RIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL--RTHFSGSSRF 405 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~-ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L--~~~f~~~~~~ 405 (2052)
..+.+...+-.+|+++...+..+.+.. ...... ..++..|++.+.|.+.. ..|+.+++.||+.. .+.+++|.-.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~ 95 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEHDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQ 95 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSSSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccccccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHH
Confidence 444455555678899999998876532 222223 47999999999988765 99999999999765 4578999999
Q ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000146 406 LLPVLLEKLKEKKPTVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKVHK 483 (2052)
Q Consensus 406 llp~LL~klkdkK~~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~~L~~K-np~vR~~~l~~L~~~l~~~~~~~l~~~l~ 483 (2052)
++|.+|+.++||...|+++|..|+++++.. +...+..+++.|..+|++. .||.|.+++.++.++.+.. +..+...++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~ 174 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMP 174 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhcc
Confidence 999999999999999999999999999997 1234678899999999865 6999999999999999876 567888899
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhc
Q 000146 484 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKL 527 (2052)
Q Consensus 484 ~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~L 527 (2052)
+++|.+..+|+|+.++|.++|.+++..++.+++++++.++++.|
T Consensus 175 ~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~ 218 (986)
T 2iw3_A 175 ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSL 218 (986)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHH
T ss_pred chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHH
Confidence 99999999999999999999999999999999999999999876
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.07 E-value=4.5e-05 Score=106.92 Aligned_cols=353 Identities=13% Similarity=0.118 Sum_probs=199.7
Q ss_pred cCCHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 000146 651 SAVWKERLEAISSLRQQVEAVQNL-DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGIS 729 (2052)
Q Consensus 651 s~~Wk~Rl~ale~L~~~v~~~~~~-~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~Lv 729 (2052)
+.+|+.|.+++-.+..+.+..... ......++..+ +++.+.+..|...++.++..+.+-+.. ....+..+++.|+
T Consensus 460 ~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l---~~l~~~~~~vr~~~~~~l~~~~~~l~~-~~~~l~~vl~~l~ 535 (963)
T 2x19_B 460 PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLI---PRISISNVQLADTVMFTIGALSEWLAD-HPVMINSVLPLVL 535 (963)
T ss_dssp SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHG---GGSCCCSHHHHHHHHHHHHHTHHHHHH-CHHHHTTTHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHH---HhCCCCcHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 468999999988888766553321 12233344443 245555667777777777666553211 1133444555555
Q ss_pred HhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhhCCC
Q 000146 730 ERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQ 808 (2052)
Q Consensus 730 eKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~ 808 (2052)
..+.+++++..|..+|..+++.++ ..-. -+..++..+..+ +.
T Consensus 536 ~~l~~~~V~~~A~~al~~l~~~~~------------------------------------~~l~p~~~~il~~l~~~-l~ 578 (963)
T 2x19_B 536 HALGNPELSVSSVSTLKKICRECK------------------------------------YDLPPYAANIVAVSQDV-LM 578 (963)
T ss_dssp HHTTCGGGHHHHHHHHHHHHHHTG------------------------------------GGCTTTHHHHHHHHHHH-HH
T ss_pred HHhCCchHHHHHHHHHHHHHHHHH------------------------------------HHHHhhHHHHHHHHHHH-hc
Confidence 555555555555555555554332 1111 123344444333 33
Q ss_pred C--CcHHHHHHHHHHHHHHHHhhC-hhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCC
Q 000146 809 S--SAAATRNATIKLLGALHKFVG-PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLP 885 (2052)
Q Consensus 809 ~--~n~~VR~aA~~ll~~Ly~~~G-~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lp 885 (2052)
. -+..+|..+.++++.+...+| .....|+..+-+.+...++.-.... .
T Consensus 579 ~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~-----~------------------------ 629 (963)
T 2x19_B 579 KQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI-----P------------------------ 629 (963)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC-----S------------------------
T ss_pred cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC-----C------------------------
Confidence 2 345677777888888777676 4566666665555554444321100 0
Q ss_pred cccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCC-----------------CC----ChhhHHHHHHhhhc
Q 000146 886 REDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQ-----------------PA----GTGELFGGLRGRLY 944 (2052)
Q Consensus 886 r~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~-----------------~~----~~~eL~~aL~~rL~ 944 (2052)
.++. -+.+...++.|..++..-..... +. .+..+++.+...+.
T Consensus 630 --------~~~~--------~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 693 (963)
T 2x19_B 630 --------NPSN--------KLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLS 693 (963)
T ss_dssp --------CHHH--------HHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred --------CHHH--------HHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 0000 01122334444444432111110 00 12344455444442
Q ss_pred c--chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch----hhH----HH
Q 000146 945 D--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD----KMV----PY 1014 (2052)
Q Consensus 945 D--sN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~----~ll----~~ 1014 (2052)
. .+..+...++.+++.++..+|..|.+|+..+++.++..+.... . .+....+..++...+.+ ..+ ..
T Consensus 694 ~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~--~-~~~l~l~~~li~~f~~~~~~~~~~~~~l~~ 770 (963)
T 2x19_B 694 KWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP--Q-ASALDLTRQLVHIFAHEPAHFPPIEALFLL 770 (963)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSC--C-HHHHHHHHHHHHHHTTCTTTCHHHHHHHHH
T ss_pred hccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCC--c-cHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 1 2458999999999999999999999999999988888765421 1 23445566666633321 122 22
Q ss_pred HH----HHHh-cCccChhHHHHHHHHHHHHhccCCC----CCc-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC-
Q 000146 1015 VT----TALT-DAKLGAEGRKDLFDWLSKQLTGLSG----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG- 1083 (2052)
Q Consensus 1015 l~----~~L~-~~k~np~~R~~~l~~L~~~l~~~~~----~~~-~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G- 1083 (2052)
+. ..+. +-...|++|...+.++...+..++. .+. +..++..+..+|.+.+.+|-+++...+..+....+
T Consensus 771 ~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~ 850 (963)
T 2x19_B 771 VTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGE 850 (963)
T ss_dssp HHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTS
T ss_pred HHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 22 2222 2111489999999999998877654 233 56666678888999999999999999999887765
Q ss_pred hhHHHHHhc
Q 000146 1084 QETIEKNLK 1092 (2052)
Q Consensus 1084 ~e~~~~~l~ 1092 (2052)
.+.+..++.
T Consensus 851 ~~~~~~~~~ 859 (963)
T 2x19_B 851 VESVGKVVQ 859 (963)
T ss_dssp SCHHHHHTT
T ss_pred hHHHHHHHH
Confidence 344444443
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.04 E-value=7.5e-06 Score=114.93 Aligned_cols=545 Identities=11% Similarity=0.099 Sum_probs=305.9
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHh----------------cCcCHHHHHHHHHHHHHHHHHhh-hcc
Q 000146 337 KWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI----------------TDVNIAVAVEAIQAIGNLARGLR-THF 399 (2052)
Q Consensus 337 kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l----------------~D~N~~V~~~A~~~l~~La~~L~-~~f 399 (2052)
.|..++.+++.+...+....+.......++..+.. | .+.+..++..|+.|+..+...-. .++
T Consensus 202 ~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~ 280 (971)
T 2x1g_F 202 AYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNY 280 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGC
T ss_pred chhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCcccccc
Confidence 47889999999887554211111133566666555 4 12466788999999999987422 234
Q ss_pred hhhhhhHHHHHHHH-------hccCc---HHHHHHHHHHHHHHHHhc---------------CCCHHHHHHHHHHHhhc-
Q 000146 400 SGSSRFLLPVLLEK-------LKEKK---PTVAESLTQTLQAMHKAG---------------CLNLVDVVEDVKTSVKN- 453 (2052)
Q Consensus 400 ~~~~~~llp~LL~k-------lkdkK---~~V~~aa~~aL~ai~~~~---------------~~~l~~ll~~l~~~L~~- 453 (2052)
.+++..++|.++.. ..+.. ..+...+...+..+.... ...+..+++.++..+.+
T Consensus 281 ~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~ 360 (971)
T 2x1g_F 281 PKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKP 360 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCC
Confidence 45666777776652 23323 144445555555555320 01233445555555444
Q ss_pred ----CChHHHHHHHHHHHHHHHhc---------C--hhHHHHhhhhHHHHHHHhhc---CC-----C-------hHHHHH
Q 000146 454 ----KVPLVRSLTLNWVTFCIETS---------S--KAAVLKVHKDYVPICMECLN---DG-----T-------PEVRDA 503 (2052)
Q Consensus 454 ----Knp~vR~~~l~~L~~~l~~~---------~--~~~l~~~l~~l~p~l~k~l~---Ds-----~-------~~VR~a 503 (2052)
....+...++.|+..+.+.. . ...+.+++..+++.+...+. |. + ...|.+
T Consensus 361 ~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~ 440 (971)
T 2x1g_F 361 GIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQD 440 (971)
T ss_dssp SCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHH
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHH
Confidence 57789999999988776521 1 12234566777777776662 11 1 124444
Q ss_pred HHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCC
Q 000146 504 AFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 583 (2052)
Q Consensus 504 A~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~ 583 (2052)
+.+++..++.++|+..+..+++.+. +.+...
T Consensus 441 ~~~~l~~~~~~~~~~~l~~~~~~l~--------~~l~~~----------------------------------------- 471 (971)
T 2x1g_F 441 ISDTFMYCYDVLNDYILEILAAMLD--------EAIADL----------------------------------------- 471 (971)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHH--------HHHHHH-----------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHhc-----------------------------------------
Confidence 5555544444444322222222111 100000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHH
Q 000146 584 KRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISS 663 (2052)
Q Consensus 584 ~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~ 663 (2052)
.-...+|+.|.+++-.
T Consensus 472 ----------------------------------------------------------------~~~~~~w~~~eaal~~ 487 (971)
T 2x1g_F 472 ----------------------------------------------------------------QRHPTHWTKLEACIYS 487 (971)
T ss_dssp ----------------------------------------------------------------HHCTTCCHHHHHHHHH
T ss_pred ----------------------------------------------------------------cCCCCcHHHHHHHHHH
Confidence 0002588888888888
Q ss_pred HHHHHHhccc-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHH
Q 000146 664 LRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAM 742 (2052)
Q Consensus 664 L~~~v~~~~~-~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~ 742 (2052)
+..+.+.... .......++..+...+. .|.+..|...++.++..+.+-+... ...+..+++.|+..+ |++++..|.
T Consensus 488 l~~iae~~~~~~~~~l~~l~~~l~~l~~-~d~~~~vr~~a~~~l~~~~~~l~~~-~~~l~~vl~~l~~~l-~~~v~~~A~ 564 (971)
T 2x1g_F 488 FQSVAEHFGGEEKRQIPRLMRVLAEIPY-EKLNVKLLGTALETMGSYCNWLMEN-PAYIPPAINLLVRGL-NSSMSAQAT 564 (971)
T ss_dssp HHHTTTC------CHHHHHHHHHHHSCT-TTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-HSSCHHHHH
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHhcCc-cccCHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHh-ChHHHHHHH
Confidence 8776544221 11223344444432221 2568889999999988887765432 245677777777777 466788888
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCC--CcHHHHHHHHH
Q 000146 743 KCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQS--SAAATRNATIK 820 (2052)
Q Consensus 743 e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~--~n~~VR~aA~~ 820 (2052)
.+|..+++.++.. +.+++ ..++..+..+ +.. .+..+|..+.+
T Consensus 565 ~al~~l~~~~~~~-----l~p~~------------------------------~~ll~~l~~~-l~~~~~~~~~~~~~~~ 608 (971)
T 2x1g_F 565 LGLKELCRDCQLQ-----LKPYA------------------------------DPLLNACHAS-LNTGRMKNSDSVRLMF 608 (971)
T ss_dssp HHHHHHHHHCHHH-----HHHHH------------------------------HHHHHHHHHH-HHSTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----ccccH------------------------------HHHHHHHHHH-HcCCCCChHHHHHHHH
Confidence 8888888765421 11111 1222222222 222 34577888888
Q ss_pred HHHHHHHhhC-hhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHh
Q 000146 821 LLGALHKFVG-PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 899 (2052)
Q Consensus 821 ll~~Ly~~~G-~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~ 899 (2052)
+++.+...++ .....++..+-+.+++.++.-.+.... .++
T Consensus 609 ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~------------------------------------~~~--- 649 (971)
T 2x1g_F 609 SIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSK------------------------------------TPA--- 649 (971)
T ss_dssp HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---------------------------------------CHH---
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------------------------------Chh---
Confidence 8888887765 445666666655555555543211000 000
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCC--------CC----ChhhHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHh
Q 000146 900 SLESPDWKVRLESIEAVNKILEEANKRIQ--------PA----GTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAM 965 (2052)
Q Consensus 900 ~l~d~~Wk~R~eale~L~~ll~~a~~~I~--------~~----~~~eL~~aL~~rL~Ds--N~~V~~~Al~~l~~la~al 965 (2052)
+-....+.++.|..++..-...+. +. ...++++.+...+.+. +..|...++.+++.++..+
T Consensus 650 -----~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~ 724 (971)
T 2x1g_F 650 -----ARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNL 724 (971)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhh
Confidence 001122344444444442111110 01 1356777777666442 5689999999999999999
Q ss_pred ChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------hhHHH----HHHHHhcC-----ccChhH
Q 000146 966 GPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD--------KMVPY----VTTALTDA-----KLGAEG 1028 (2052)
Q Consensus 966 g~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~--------~ll~~----l~~~L~~~-----k~np~~ 1028 (2052)
|..|.+|+..+++.++..+..... ..+...+..++...|-+ .++.. +...|... ...|++
T Consensus 725 ~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~ 801 (971)
T 2x1g_F 725 RSSFQPMLQDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDT 801 (971)
T ss_dssp HC--CTHHHHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHH
T ss_pred hhhccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchH
Confidence 999999999999999988876432 34777888888777653 22222 11222211 115889
Q ss_pred HHHHHHHHHHHhccCCC----CCc-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1029 RKDLFDWLSKQLTGLSG----FPD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1029 R~~~l~~L~~~l~~~~~----~~~-~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
+.+.+.++...+...+. .+. +..++...+.+|.-.+.++.+++...+..++..
T Consensus 802 ~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~ 859 (971)
T 2x1g_F 802 METFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQ 859 (971)
T ss_dssp HHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999998887654 233 555666666777666666777888888776665
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.04 E-value=8.6e-09 Score=131.15 Aligned_cols=377 Identities=12% Similarity=0.075 Sum_probs=252.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHh-cccc-c------hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEA-VQNL-D------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT 714 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~-~~~~-~------~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~ 714 (2052)
+.+++.|.+.+...|..|+..|.+++.. .++. . .....|++.|. .+.+..++..++.+|..++....
T Consensus 23 ~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~-----~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 23 SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLK-----RKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCH
Confidence 5688899999999999999999988763 1111 0 12344555543 12377888899999888765211
Q ss_pred CCchhhH-HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 000146 715 KFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKNPKVLSEGILWMVSA 784 (2052)
Q Consensus 715 ~~~~~~~-~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~-------~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~ 784 (2052)
......+ ..++|.|+.-+.+ ..+|..|..+|..++..... .-+++.++..+.+..++.++..++..|..+
T Consensus 98 ~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 98 LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 1111111 2467888887765 57899999999998874321 123566666654457899999999999888
Q ss_pred HHHhCCC--CCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCC
Q 000146 785 VEDFGVS--HLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 862 (2052)
Q Consensus 785 i~~fG~~--~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~ 862 (2052)
....+.. ..-+..+++.+..+ +.+.++.||..|..++..|.....+ ....+. +
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~------------~~~~~~----~-------- 232 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPND------------KIQAVI----D-------- 232 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSHH------------HHHHHH----H--------
T ss_pred hCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCcH------------HHHHHH----H--------
Confidence 7533121 11135678888887 9999999999999888777532111 000000 0
Q ss_pred CccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhh
Q 000146 863 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 942 (2052)
Q Consensus 863 p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~r 942 (2052)
..+.+.++..+.+.+|.+|..++..|..+........+.-.-..+++.|...
T Consensus 233 ----------------------------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 284 (450)
T 2jdq_A 233 ----------------------------AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHL 284 (450)
T ss_dssp ----------------------------TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHH
T ss_pred ----------------------------cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHH
Confidence 0023467778889999999999999998875321100000002478888999
Q ss_pred hccchHHHHHHHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhHH
Q 000146 943 LYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVP 1013 (2052)
Q Consensus 943 L~DsN~~V~~~Al~~l~~la~alg~~~~~~~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l--------~~ll~ 1013 (2052)
|.+.+..++..|+.+|+.++........... ..++|.++..+.+..+.||..|..+|..+...... ..+++
T Consensus 285 l~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 285 LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 9999999999999999999864333333333 36899999999999999999999999999875321 23677
Q ss_pred HHHHHHhcCccChhHHHHHHHHHHHHhccCCC--------CCchhhh------HHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1014 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1014 ~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~--------~~~~~~l------l~pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
.+...|.++ ++.+|..++..|...+..... ...+... +..+...+.+.+.+||+.|..++..+.
T Consensus 365 ~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 365 PLCDLLTVM--DSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHGGGSS--CHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 788888765 588898888877765543211 0111122 223455567888899999888777655
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=99.03 E-value=5.3e-08 Score=123.81 Aligned_cols=385 Identities=11% Similarity=0.047 Sum_probs=261.3
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchhH
Q 000146 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPL 95 (2052)
Q Consensus 16 l~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (2052)
+-+.+.+.+...|..|...|.+++....+ +....+ ... ....+.
T Consensus 25 l~~~l~s~~~~~r~~A~~~L~~l~~~~~~---~~~~~~------~~~---------------------------~~~i~~ 68 (450)
T 2jdq_A 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPN---PPIDEV------IST---------------------------PGVVAR 68 (450)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHSSSS---CCHHHH------HTS---------------------------TTHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCCC---CcHHHH------HHc---------------------------CCcHHH
Confidence 67788999999999999999998753211 222222 000 001444
Q ss_pred HHHHhccC-cHHHHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--h-----
Q 000146 96 FKKTVADS-NAPVQDKALDALIAYLKAADADAGRYA-KEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--V----- 165 (2052)
Q Consensus 96 ~~k~v~Ds-N~~aqe~gl~al~~~l~~~~~~~~~~~-~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~--~----- 165 (2052)
+.+++.+. |..+|..++.+|..+............ ...++.|++- |. ..+.+|+.|..++..+..... .
T Consensus 69 L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~ 147 (450)
T 2jdq_A 69 FVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIEL-LSSEFEDVQEQAVWALGNIAGDSTMCRDYVLD 147 (450)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 55667777 999999999999887753222111111 3467777765 55 678999999999988876421 1
Q ss_pred hhHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHhCCC--CcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCch
Q 000146 166 DVFLDVMEKAIKN-KVAKAVVPAIDVMFQALSEFGAK--IIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP 242 (2052)
Q Consensus 166 ~~v~e~Ll~~l~~-K~PKvv~~~l~~L~~~l~~FG~~--~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~ 242 (2052)
..+++.|+..+.+ .++.++..++.+|..+....+.. ..-...+++.|..++.+.|..||..+...+..+..... +
T Consensus 148 ~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~-~- 225 (450)
T 2jdq_A 148 CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPN-D- 225 (450)
T ss_dssp TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSH-H-
T ss_pred CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCc-H-
Confidence 2456777788875 78999999999998877543221 11236788999999999999999988877766553210 0
Q ss_pred hhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 000146 243 VKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILT 322 (2052)
Q Consensus 243 l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~ 322 (2052)
. .+.+- +. + +
T Consensus 226 -----------~-~~~~~---~~------------------------------~-----------------------~-- 235 (450)
T 2jdq_A 226 -----------K-IQAVI---DA------------------------------G-----------------------V-- 235 (450)
T ss_dssp -----------H-HHHHH---HT------------------------------T-----------------------T--
T ss_pred -----------H-HHHHH---Hc------------------------------C-----------------------c--
Confidence 0 00000 00 0 0
Q ss_pred cCccchhhhhcccCChHHHHHHHHHHHHHhcCCC-CCCCCh-HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcch
Q 000146 323 PLEKSGFWEGVKATKWSERKDAVAELTKLASTKR-IAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 400 (2052)
Q Consensus 323 kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~k-i~~~dy-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~ 400 (2052)
+ +.+...+.+.+|..|..|+..|..++.... ....-+ ..+++.|...+.+.+..|+..|+.+|+.++.+-.....
T Consensus 236 -i--~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~ 312 (450)
T 2jdq_A 236 -C--RRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ 312 (450)
T ss_dssp -H--HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred -H--HHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 0 134455667789999999999998874311 000000 13778888899999999999999999999875433333
Q ss_pred hhh-hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-CCH-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000146 401 GSS-RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-LNL-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 473 (2052)
Q Consensus 401 ~~~-~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~-~~l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~ 473 (2052)
... ..++|.|+..+++..+.|+..+..+|..++..+. ... ..+++.|...++++++.+|..++..|..++...
T Consensus 313 ~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 392 (450)
T 2jdq_A 313 TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392 (450)
T ss_dssp HHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 333 3789999999999999999999999999987511 011 236677888889999999999999999988754
Q ss_pred ChhH------HHHhhhhH-----HHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 474 SKAA------VLKVHKDY-----VPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 474 ~~~~------l~~~l~~l-----~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
+... ..++...+ ++.+..++++.+.+||+.|..++..+.
T Consensus 393 ~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~ 442 (450)
T 2jdq_A 393 EQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 442 (450)
T ss_dssp HHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 3210 11233333 577888889999999999888776554
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-08 Score=129.01 Aligned_cols=382 Identities=10% Similarity=0.050 Sum_probs=260.6
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchhH
Q 000146 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPL 95 (2052)
Q Consensus 16 l~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (2052)
+-+.|.+.+|..|..|...|.+++... .++....+ .. ....+.
T Consensus 92 lv~~L~s~~~~~~~~A~~~L~~ll~~~---~~~~~~~~------~~----------------------------~g~i~~ 134 (530)
T 1wa5_B 92 MTQQLNSDDMQEQLSATVKFRQILSRE---HRPPIDVV------IQ----------------------------AGVVPR 134 (530)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHHHTCCS---SSCSHHHH------HH----------------------------TTCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCC---CCccHHHH------HH----------------------------CCCHHH
Confidence 456788899999999999999887542 12212211 00 011555
Q ss_pred HHHHhccC-cHHHHHHHHHHHHHHHHHhhhhhhhhh--HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--h----
Q 000146 96 FKKTVADS-NAPVQDKALDALIAYLKAADADAGRYA--KEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--V---- 165 (2052)
Q Consensus 96 ~~k~v~Ds-N~~aqe~gl~al~~~l~~~~~~~~~~~--~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~--~---- 165 (2052)
+.+++.+. |..+|..|+.+|..+...... ....+ ...++.|+.- |. ..+.+|+.|..++..+..... .
T Consensus 135 Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv~l-L~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~ 212 (530)
T 1wa5_B 135 LVEFMRENQPEMLQLEAAWALTNIASGTSA-QTKVVVDADAVPLFIQL-LYTGSVEVKEQAIWALGNVAGDSTDYRDYVL 212 (530)
T ss_dssp HHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHHH-HHHCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-HHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCccchHHHH
Confidence 66778886 999999999999877653221 11111 2345666654 44 688999999999998875421 1
Q ss_pred -hhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCC--cChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCch
Q 000146 166 -DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP 242 (2052)
Q Consensus 166 -~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~--i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~ 242 (2052)
..+++.|+..+.+.++.++..++.+|..+...-+... .-...+++.|..++.|.|..||..+..++..|..... .
T Consensus 213 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~-~- 290 (530)
T 1wa5_B 213 QCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQ-E- 290 (530)
T ss_dssp HTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH-H-
T ss_pred HcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH-H-
Confidence 2456777888888889999999888888775432211 1235688999999999999999999888877663311 0
Q ss_pred hhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 000146 243 VKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILT 322 (2052)
Q Consensus 243 l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~ 322 (2052)
..+.+ ++. + +
T Consensus 291 ------------~~~~~---~~~------------------------------~-----------------------~-- 300 (530)
T 1wa5_B 291 ------------AIQAV---IDV------------------------------R-----------------------I-- 300 (530)
T ss_dssp ------------HHHHH---HHT------------------------------T-----------------------C--
T ss_pred ------------HHHHH---Hhc------------------------------C-----------------------c--
Confidence 00001 000 0 0
Q ss_pred cCccchhhhhcccCChHHHHHHHHHHHHHhcCC-CCCCCCh-HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcch
Q 000146 323 PLEKSGFWEGVKATKWSERKDAVAELTKLASTK-RIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 400 (2052)
Q Consensus 323 kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~-ki~~~dy-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~ 400 (2052)
+ +.+...+.+.+|..|..|+..|..++... .....-+ ..+++.|...+.+.+..|+..|+.+|+.|+.+-.....
T Consensus 301 -v--~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 377 (530)
T 1wa5_B 301 -P--KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 377 (530)
T ss_dssp -H--HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred -H--HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 0 13445566788999999999998887421 1000000 24677888899988999999999999999875433333
Q ss_pred hhh-hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC----H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 000146 401 GSS-RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN----L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 470 (2052)
Q Consensus 401 ~~~-~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~----l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l 470 (2052)
.++ ..++|.|+..+.+....|+..+..+|..++.. ..+ . ..+++.|...+.+.++.++..++..|..++
T Consensus 378 ~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~ 456 (530)
T 1wa5_B 378 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG-GLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL 456 (530)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 332 36889999999999999999999999999875 221 1 125677888889999999999999999988
Q ss_pred HhcChh---------HHHHhhh--hHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 471 ETSSKA---------AVLKVHK--DYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 471 ~~~~~~---------~l~~~l~--~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
...+.. .+...+. ..++.+..+++|.+++|++.|..++..+.
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~ 509 (530)
T 1wa5_B 457 KMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 509 (530)
T ss_dssp HHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHS
T ss_pred HhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 754321 1111121 24778888999999999998887776544
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=99.02 E-value=0.00047 Score=96.58 Aligned_cols=589 Identities=13% Similarity=0.082 Sum_probs=317.0
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcc----hhhhhhHHHH
Q 000146 335 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHF----SGSSRFLLPV 409 (2052)
Q Consensus 335 s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f----~~~~~~llp~ 409 (2052)
+.+=..|++|-+.|..+-+.| ++-. .+..++. +.+..|+..|+.++....+.--..+ ..+.+..+-.
T Consensus 36 ~~~~~~r~~A~~~L~~~~~~p-----~~~~---~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~ 107 (963)
T 2x19_B 36 DPNIENKNLAQKWLMQAQVSP-----QAWH---FSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFT 107 (963)
T ss_dssp CCCHHHHHHHHHHHHHHHHST-----THHH---HHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCH-----HHHH---HHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHH
Confidence 456778999998888876543 2222 2333344 6678899999999988776422223 2233333333
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHhcC---------
Q 000146 410 LLEKLKEKKPTVAESLTQTLQAMHKAG-CLNLVDVVEDVKTSVKN-----KVPLVRSLTLNWVTFCIETSS--------- 474 (2052)
Q Consensus 410 LL~klkdkK~~V~~aa~~aL~ai~~~~-~~~l~~ll~~l~~~L~~-----Knp~vR~~~l~~L~~~l~~~~--------- 474 (2052)
++.......+.|+..+..++..++.+. ...-++++++|...+++ .++..+...+.+|..+.+...
T Consensus 108 ~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r 187 (963)
T 2x19_B 108 QITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRK 187 (963)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC-----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHH
Confidence 333332235889999999999999871 12346888999888765 256677888888887765320
Q ss_pred ---hhHHHHhhhhHHHHHHHhhcCCCh--HHHHHHHHHHHHHHHHhCChhH--HHhHhhc----c-----HHHHHHHHHH
Q 000146 475 ---KAAVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPL--ERSIEKL----D-----DVRRNKLSEM 538 (2052)
Q Consensus 475 ---~~~l~~~l~~l~p~l~k~l~Ds~~--~VR~aA~~~l~~l~~~~Ge~~~--~~~l~~L----d-----~~k~kkI~e~ 538 (2052)
+..+...++.+++.+..++.+... .++.++.+|+..... +|.... .++++.+ + ....+-+.+.
T Consensus 188 ~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i 266 (963)
T 2x19_B 188 GLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNA 266 (963)
T ss_dssp ----CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 111234557788888888876543 489999999977666 554211 2222211 0 0111111111
Q ss_pred HhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCC
Q 000146 539 IAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTE 618 (2052)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~ 618 (2052)
+.+. .++
T Consensus 267 ~~~~------------------------------------------~~~------------------------------- 273 (963)
T 2x19_B 267 ISQP------------------------------------------DAQ------------------------------- 273 (963)
T ss_dssp HTCT------------------------------------------TGG-------------------------------
T ss_pred Hccc------------------------------------------ccc-------------------------------
Confidence 1100 000
Q ss_pred CCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHh----cc---ccchHHHHHHHHH---hcC
Q 000146 619 APEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEA----VQ---NLDQSVEILVRLV---CML 688 (2052)
Q Consensus 619 ~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~----~~---~~~~~~~~Lv~~L---~~~ 688 (2052)
...-....+-..+..++ +.+...+...+......-.+-+..+.+. .. ........++.++ ...
T Consensus 274 ------~~~~~~~~l~~~~~~~~-~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~ 346 (963)
T 2x19_B 274 ------RYVNTLLKLIPLVLGLQ-EQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGI 346 (963)
T ss_dssp ------GCHHHHHHHHHHHHTTH-HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTC
T ss_pred ------cCHHHHHHHHHHHHhhH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 00000011111111110 1111112222211111111111111111 00 0001122222222 123
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHcCCC-----------chhhHHHHHHHHHHhhhc------------h-----hhhHH
Q 000146 689 PGWSEKNVQVQQQVIEVINYLAATATKF-----------PKKCVVLCLLGISERVAD------------I-----KTRAH 740 (2052)
Q Consensus 689 pg~~DsN~qV~~~~Le~l~~l~~~~~~~-----------~~~~~~~il~~LveKlgd------------~-----K~r~~ 740 (2052)
|+.-+.+..|...++++|..+++....+ ....+..+++.++.++.- . ..|..
T Consensus 347 ~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~ 426 (963)
T 2x19_B 347 PGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD 426 (963)
T ss_dssp SSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHH
Confidence 4321122235667777777777632211 123444556666666521 0 13667
Q ss_pred HHHHHHHHHhhhChhHHHHHHHHHH---h----hCCCHHHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhhCCCCCcH
Q 000146 741 AMKCLTTFSEAVGPGFIFERLYKIM---K----DHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAA 812 (2052)
Q Consensus 741 a~e~L~~l~E~~~~~~Vl~~L~~~l---~----~~KnpKv~~e~L~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~~n~ 812 (2052)
+.++|..++...+. .+++.++..+ . .+.+|+.+.+++.++..+.+......- .+..+++.+.. +.+.++
T Consensus 427 ~~~~L~~~~~~~~~-~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~--l~~~~~ 503 (963)
T 2x19_B 427 ISDTLMYVYEMLGA-ELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR--ISISNV 503 (963)
T ss_dssp HHHHHHHHHHHHTH-HHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG--SCCCSH
T ss_pred HHHHHHHHHHHccH-HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh--CCCCcH
Confidence 78888888887763 3344333322 2 457899999998888887764332211 13456665543 555689
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccc
Q 000146 813 ATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGK 892 (2052)
Q Consensus 813 ~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~ 892 (2052)
.||..+..+++.+..+++..- .++..
T Consensus 504 ~vr~~~~~~l~~~~~~l~~~~-~~l~~----------------------------------------------------- 529 (963)
T 2x19_B 504 QLADTVMFTIGALSEWLADHP-VMINS----------------------------------------------------- 529 (963)
T ss_dssp HHHHHHHHHHHHTHHHHHHCH-HHHTT-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCH-HHHHH-----------------------------------------------------
Confidence 999999999998887664321 12211
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc--cchHHHHHHHHHHHHHHHHHhC-hhh
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY--DSNKNLVMATLITLGAVASAMG-PAV 969 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~--DsN~~V~~~Al~~l~~la~alg-~~~ 969 (2052)
+-+.++..+.+ -++|..|...+..+++.+...+.|. +.+++..|...+. +.....+...+++++.++.+++ ..+
T Consensus 530 vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~-~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~ 606 (963)
T 2x19_B 530 VLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPY-AANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEI 606 (963)
T ss_dssp THHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTT-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHH
Confidence 12234444543 4577888999999998766667776 4888888887775 3467788899999999999887 778
Q ss_pred HHhhhHHHHHHHHHhCC-----CcHHHH---HHHHHHHHHHHHhcCchhhHHHHHHH--HhcCccChhHHHHHHHHHHHH
Q 000146 970 EKSSKGVLSDILKCLGD-----NKKHMR---ECTLTVLDAWLAAVHLDKMVPYVTTA--LTDAKLGAEGRKDLFDWLSKQ 1039 (2052)
Q Consensus 970 ~~~~~~llp~ll~~l~D-----~k~~VR---~aa~~aL~~i~~~~~l~~ll~~l~~~--L~~~k~np~~R~~~l~~L~~~ 1039 (2052)
.+|+..++++++..+.. ..+..+ ....++|..++..++...- ..+... ....+ .+..+..+...+..
T Consensus 607 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~- 683 (963)
T 2x19_B 607 LKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHH-EDDHEGPELRKLP-VPQGPNPVVVVLQQ- 683 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCC-C----------------CCCHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcc-cccccccccccCC-CCCCCCchHHHHHH-
Confidence 99999999999887642 233333 3556666677776642100 000000 00000 00000111112211
Q ss_pred hccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChh
Q 000146 1040 LTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQE 1085 (2052)
Q Consensus 1040 l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e 1085 (2052)
+.+.+.-++.... .+.+|++.+..++..+...+|.+
T Consensus 684 ---------~~~~~~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~ 719 (963)
T 2x19_B 684 ---------VFQLIQKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDD 719 (963)
T ss_dssp ---------HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSSST
T ss_pred ---------HHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHhhccc
Confidence 1222222333222 35689999999999999999865
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=98.99 E-value=8e-09 Score=135.03 Aligned_cols=377 Identities=13% Similarity=0.084 Sum_probs=252.5
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhcccc--c-----hHHHHHHHHHhcCCCCccc-HHHHHHHHHHHHHHHHHHcC
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--D-----QSVEILVRLVCMLPGWSEK-NVQVQQQVIEVINYLAATAT 714 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~--~-----~~~~~Lv~~L~~~pg~~Ds-N~qV~~~~Le~l~~l~~~~~ 714 (2052)
+.++..|.+.++..|..|+..|.+++...... . .....|+.+ +.+. +..|...++.+|..++....
T Consensus 90 ~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~------L~~~~~~~v~~~A~~~L~~l~~~~~ 163 (530)
T 1wa5_B 90 PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF------MRENQPEMLQLEAAWALTNIASGTS 163 (530)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHT------TSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHH------hCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 67889999999999999999999887542111 0 112233333 3444 77888888888887765311
Q ss_pred CCchhhH-HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhCh--h-----HHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 000146 715 KFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--G-----FIFERLYKIMKDHKNPKVLSEGILWMVSA 784 (2052)
Q Consensus 715 ~~~~~~~-~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~--~-----~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~ 784 (2052)
......+ ..++|.|+.-+.+ ..++..|..+|..++..... + -+++.|+..+ .+.++.++..++..|..+
T Consensus 164 ~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L 242 (530)
T 1wa5_B 164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNL 242 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHH
Confidence 1111111 2356777776654 57899999999998864211 1 2355566665 568899999999888888
Q ss_pred HHHhCCCC--CChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCC
Q 000146 785 VEDFGVSH--LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVV 862 (2052)
Q Consensus 785 i~~fG~~~--l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~ 862 (2052)
....+... .....+++.+..+ +.+.++.||..|..+++.|...... ....+ ++ .
T Consensus 243 ~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~------------~~~~~---~~-~------- 298 (530)
T 1wa5_B 243 CRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGPQE------------AIQAV---ID-V------- 298 (530)
T ss_dssp HCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSCHH------------HHHHH---HH-T-------
T ss_pred hCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCHH------------HHHHH---Hh-c-------
Confidence 75331211 1234677778787 9999999999999999887643111 11111 00 0
Q ss_pred CccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhh
Q 000146 863 PKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR 942 (2052)
Q Consensus 863 p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~r 942 (2052)
.+.+.++..+.+.+|.+|..|+..|..++.......+.-.-..+++.|...
T Consensus 299 -----------------------------~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l 349 (530)
T 1wa5_B 299 -----------------------------RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL 349 (530)
T ss_dssp -----------------------------TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred -----------------------------CcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHH
Confidence 023567788888999999999999998874211000000012477888999
Q ss_pred hccchHHHHHHHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----------hhh
Q 000146 943 LYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DKM 1011 (2052)
Q Consensus 943 L~DsN~~V~~~Al~~l~~la~alg~~~~~~~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l----------~~l 1011 (2052)
|.+.+..++..|+.+|+.++.........++ ..++|.++..|.+....||..|..+|..++...+. ..+
T Consensus 350 L~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~ 429 (530)
T 1wa5_B 350 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 429 (530)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCC
Confidence 9999999999999999999864322233333 35789999999999999999999999999876432 136
Q ss_pred HHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC--------CCchh------hhHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000146 1012 VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAA------HLLKPASIAMTDKSSDVRKAAEACIVE 1077 (2052)
Q Consensus 1012 l~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~--------~~~~~------~ll~pl~~~L~D~~~dVRkaA~~~L~~ 1077 (2052)
++.+...|.+. ++.+|..++..|...+..... ..... ..+..|...+.|.+.+|++.|..+|..
T Consensus 430 l~~L~~ll~~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~ 507 (530)
T 1wa5_B 430 IKPLCDLLEIA--DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507 (530)
T ss_dssp HHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 77788888765 688998888888776653211 01111 123446666789999999999888876
Q ss_pred HHHH
Q 000146 1078 ILRA 1081 (2052)
Q Consensus 1078 l~~~ 1081 (2052)
+...
T Consensus 508 ~~~~ 511 (530)
T 1wa5_B 508 YFGE 511 (530)
T ss_dssp HSSS
T ss_pred HCCc
Confidence 6544
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-06 Score=113.71 Aligned_cols=473 Identities=11% Similarity=0.046 Sum_probs=256.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHH
Q 000146 424 SLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDA 503 (2052)
Q Consensus 424 aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~a 503 (2052)
++...+..++.. ........++...+.+++...|+-...++..++... +. .+-.++..+.+-|.|+++.||..
T Consensus 54 ~l~kli~~~~~G--~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e----~~~l~in~l~kDL~~~n~~vr~l 126 (618)
T 1w63_A 54 NVAKLLYMHMLG--YPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDER-QD----VHLLMTNCIKNDLNHSTQFVQGL 126 (618)
T ss_dssp HHHHHHHHHHTT--CCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HH----HHHHHHHHHHHHHSCSSSHHHHH
T ss_pred HHHHHHHHHHcC--CCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cH----HHHHHHHHHHHhcCCCCHhHHHH
Confidence 344444433332 345667777778888899888888777776655432 11 12456788888999999999999
Q ss_pred HHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCC
Q 000146 504 AFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSG 583 (2052)
Q Consensus 504 A~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~ 583 (2052)
|..+++.+. ...+ .+.+-
T Consensus 127 AL~~L~~i~----~~~~---~~~l~------------------------------------------------------- 144 (618)
T 1w63_A 127 ALCTLGCMG----SSEM---CRDLA------------------------------------------------------- 144 (618)
T ss_dssp HHHHHHHHC----CHHH---HHHHH-------------------------------------------------------
T ss_pred HHHHHHhcC----CHHH---HHHHH-------------------------------------------------------
Confidence 888887654 1111 11100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHH
Q 000146 584 KRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISS 663 (2052)
Q Consensus 584 ~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~ 663 (2052)
+.+...|.|.+.-.|..|+..
T Consensus 145 -----------------------------------------------------------~~l~~~L~~~~~~VRk~A~~a 165 (618)
T 1w63_A 145 -----------------------------------------------------------GEVEKLLKTSNSYLRKKAALC 165 (618)
T ss_dssp -----------------------------------------------------------HHHHHHHHSCCHHHHHHHHHH
T ss_pred -----------------------------------------------------------HHHHHHHcCCCHHHHHHHHHH
Confidence 122333444455555555555
Q ss_pred HHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhh----------
Q 000146 664 LRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA---------- 733 (2052)
Q Consensus 664 L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg---------- 733 (2052)
+..++....+. .+.++..+. ..+.|.|..|+..++.++..+....+.. ...+..++|.++..+.
T Consensus 166 l~~l~~~~p~~---v~~~~~~l~--~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~ 239 (618)
T 1w63_A 166 AVHVIRKVPEL---MEMFLPATK--NLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPE 239 (618)
T ss_dssp HHHHHHHCGGG---GGGGGGGTT--TSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHChHH---HHHHHHHHH--HHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 55555432111 011111111 2345666666666666655544321110 0122233444443322
Q ss_pred -------chhhhHHHHHHHHHHHhhhChh------HHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhH
Q 000146 734 -------DIKTRAHAMKCLTTFSEAVGPG------FIFERLYKIM--KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 798 (2052)
Q Consensus 734 -------d~K~r~~a~e~L~~l~E~~~~~------~Vl~~L~~~l--~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~l 798 (2052)
++-.+....++|..++... ++ -++..+++.. .++.++-|+.+++..+.. .+...--....
T Consensus 240 ~~~~~~~~~~~q~~il~~L~~l~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~----l~~~~~l~~~a 314 (618)
T 1w63_A 240 HDVSGISDPFLQVRILRLLRILGRND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMD----IKSESGLRVLA 314 (618)
T ss_dssp TCSSSSSCHHHHHHHHHHHHHHTTTC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHH----SCCCHHHHHHH
T ss_pred ccccCCCCChHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh----cCCCHHHHHHH
Confidence 2233444445555554321 11 1233333221 123445677777766644 22210001234
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhh-------hccHHHH-HHHHHHHhcCCCCCCCCCccccccc
Q 000146 799 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLA-------DVKPALL-SALDAEYEKNPFEGTVVPKKTVRAS 870 (2052)
Q Consensus 799 i~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~-------~lkP~ll-~~Le~efeK~~~~~~p~p~r~~r~~ 870 (2052)
+..+..+ +.+++++||..|...++.+....+..+..++. +-.+.+. ..++ -+-++..
T Consensus 315 ~~~L~~~-L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~ale-lL~~l~~------------- 379 (618)
T 1w63_A 315 INILGRF-LLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAME-LSFALVN------------- 379 (618)
T ss_dssp HHHHHHH-HTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHH-HHHHHCC-------------
T ss_pred HHHHHHH-HhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHH-HHHHHcc-------------
Confidence 5556666 88899999999999999887664433333221 1111111 0111 0001100
Q ss_pred cccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHH
Q 000146 871 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNL 950 (2052)
Q Consensus 871 ~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V 950 (2052)
...+ ..|.+++..-+.+.+-..|.+++..|..++.. ..+. +...+..|...|.+.+..+
T Consensus 380 ---------------~~nv-~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k----~~~~-~~~~v~~ll~lL~~~~~~v 438 (618)
T 1w63_A 380 ---------------GNNI-RGMMKELLYFLDSCEPEFKADCASGIFLAAEK----YAPS-KRWHIDTIMRVLTTAGSYV 438 (618)
T ss_dssp ---------------SSST-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS----SCCC-HHHHHHHHHHHHHHTGGGS
T ss_pred ---------------cccH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH----hCcc-HHHHHHHHHHHHHhccchh
Confidence 0001 12445677777777888899999999888752 2222 4677888888888777777
Q ss_pred HHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHhcC-------------chhhHHHH
Q 000146 951 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD--NKKHMRECTLTVLDAWLAAVH-------------LDKMVPYV 1015 (2052)
Q Consensus 951 ~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D--~k~~VR~aa~~aL~~i~~~~~-------------l~~ll~~l 1015 (2052)
...++..+..+...- +.+.. .++..++..+.+ ....+..++.-+|+.+...+. ...+++.+
T Consensus 439 ~~~~~~~l~~ii~~~-p~l~~---~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l 514 (618)
T 1w63_A 439 RDDAVPNLIQLITNS-VEMHA---YTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDIL 514 (618)
T ss_dssp CSSHHHHHHHHHHHS-CSTHH---HHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-hhHHH---HHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHH
Confidence 777777777777643 33332 234444444442 223344467888888876542 23455556
Q ss_pred HHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHH-HHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1016 TTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP-ASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1016 ~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~p-l~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
...+.+...++.+|..++..+.+++...+. ..+.+.. +-.+..|.+.|||..|...+..+
T Consensus 515 ~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~---~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 515 ESVLISNMSTSVTRGYALTAIMKLSTRFTC---TVNRIKKVVSIYGSSIDVELQQRAVEYNALF 575 (618)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHhCcc---hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 665542112588999999999887766542 2444444 44566899999999999766544
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.95 E-value=0.00015 Score=101.82 Aligned_cols=570 Identities=11% Similarity=0.084 Sum_probs=305.5
Q ss_pred cCChHHHHHHHHHHHHHhc-C-CCCCCCChHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHH
Q 000146 335 ATKWSERKDAVAELTKLAS-T-KRIAPGDFTEVCRTLKKLITD---VNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 409 (2052)
Q Consensus 335 s~kWkeR~eaL~~L~~L~~-~-~ki~~~dy~~l~~~L~k~l~D---~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 409 (2052)
+.+=..|.-|+..|+..+. . ..+...+...+-..|...+.. ....|+...+.+|..+++..-+ ....+++.
T Consensus 51 ~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p----~Wp~~l~~ 126 (971)
T 2x1g_F 51 GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG----EWPGAIEE 126 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC----C------H
T ss_pred CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc----cccHHHHH
Confidence 3455678889998888663 2 345555555555555555542 2578999999999999987644 45678888
Q ss_pred HHHHhccC------cHHHHHHHHHHHHHHHHh----------------cCCCHHHHHHHHHHHhhc-CCh-------HHH
Q 000146 410 LLEKLKEK------KPTVAESLTQTLQAMHKA----------------GCLNLVDVVEDVKTSVKN-KVP-------LVR 459 (2052)
Q Consensus 410 LL~klkdk------K~~V~~aa~~aL~ai~~~----------------~~~~l~~ll~~l~~~L~~-Knp-------~vR 459 (2052)
|+..++.. .+..++.+...|..+.+- ....++.+++-+...+++ .++ .++
T Consensus 127 l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~ 206 (971)
T 2x1g_F 127 VINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNM 206 (971)
T ss_dssp HHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHH
Confidence 88888664 566777888888877641 012344555555555542 222 788
Q ss_pred HHHHHHHHHHHHh--cChhHHHHhhhhHHHHHHHhh----------------cCCChHHHHHHHHHHHHHHHHhCChhHH
Q 000146 460 SLTLNWVTFCIET--SSKAAVLKVHKDYVPICMECL----------------NDGTPEVRDAAFSVLAAIAKSVGMRPLE 521 (2052)
Q Consensus 460 ~~~l~~L~~~l~~--~~~~~l~~~l~~l~p~l~k~l----------------~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~ 521 (2052)
..++..+..++.. .+.. ....+++.+.. + .+.++++|++|.+|+..+...-......
T Consensus 207 ~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~ 281 (971)
T 2x1g_F 207 NRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDCHNYP 281 (971)
T ss_dssp HHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGCH
T ss_pred HHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccccccH
Confidence 8888888887774 3332 22456666655 3 2357899999999999988652211112
Q ss_pred HhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCC
Q 000146 522 RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKP 601 (2052)
Q Consensus 522 ~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~ 601 (2052)
+++..+-+.-......+.....
T Consensus 282 ~~~~~l~~~~~~~~~~~~~~~~---------------------------------------------------------- 303 (971)
T 2x1g_F 282 KTAFVLIKMFLDSLSEITKTEW---------------------------------------------------------- 303 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHh----------------------------------------------------------
Confidence 2222211111110011100000
Q ss_pred CCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHH---------HHHHHHHHHHhcc
Q 000146 602 SAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLE---------AISSLRQQVEAVQ 672 (2052)
Q Consensus 602 ~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~---------ale~L~~~v~~~~ 672 (2052)
+ +|. +. ++....+.. ++..+... |..-+. ....+.
T Consensus 304 ----------------~--~d~-~~----~~~~~~l~~-----l~~~~~~~-~~~~~~~~~~~~~~~~~~~l~------- 347 (971)
T 2x1g_F 304 ----------------K--REN-DN----EDIIVHIYM-----LFVSSVER-HSTLLLSGITSADPELSILVH------- 347 (971)
T ss_dssp ----------------S--SSC-SC----SHHHHHHHH-----HHHHHHHH-THHHHHHHHHTCCHHHHHHHH-------
T ss_pred ----------------c--ccc-cc----hHHHHHHHH-----HHHHHHHH-HHHHHHHHhccCcccccHHHH-------
Confidence 0 000 00 111111111 11111110 000000 001111
Q ss_pred ccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcC--------C----CchhhHHHHHHHHHHhhh-------
Q 000146 673 NLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATAT--------K----FPKKCVVLCLLGISERVA------- 733 (2052)
Q Consensus 673 ~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~--------~----~~~~~~~~il~~LveKlg------- 733 (2052)
...+.++.+.. .||+...+..|...++++|..+++... . .....+..+++.++.++.
T Consensus 348 ---~~l~~ll~~~~-~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~ 423 (971)
T 2x1g_F 348 ---RIVQEILHCTD-KPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSL 423 (971)
T ss_dssp ---HHHHHHHHHHH-CSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTT
T ss_pred ---HHHHHHHHHHc-CCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 12233444332 356554455688888888888776321 1 113455667777777762
Q ss_pred ---c-------hhhhHHHHHHHHHHHhhhChhHHHHHHHHHHh---h-----CCCHHHHHHHHHHHHHHHHHhCCCC-CC
Q 000146 734 ---D-------IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK---D-----HKNPKVLSEGILWMVSAVEDFGVSH-LK 794 (2052)
Q Consensus 734 ---d-------~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~---~-----~KnpKv~~e~L~~L~~~i~~fG~~~-l~ 794 (2052)
| ...|..+.++|..++...+ +.+++.++..+. . ..+|+.+.+++..+..+.+...... -.
T Consensus 424 ~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~ 502 (971)
T 2x1g_F 424 AKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQ 502 (971)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CH
T ss_pred cccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHH
Confidence 1 1246778889999998776 445555544331 2 2789999999988887755333211 12
Q ss_pred hHhHHHHHHhhCC-CCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccccccc
Q 000146 795 LKDLIDFCKDTGL-QSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASEST 873 (2052)
Q Consensus 795 ~k~li~~l~~~gL-~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~ 873 (2052)
+..+++.+..+ . .+.++.||..|..+++.+..|++... .|+..+-|.++..+
T Consensus 503 l~~l~~~l~~l-~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l~~vl~~l~~~l------------------------- 555 (971)
T 2x1g_F 503 IPRLMRVLAEI-PYEKLNVKLLGTALETMGSYCNWLMENP-AYIPPAINLLVRGL------------------------- 555 (971)
T ss_dssp HHHHHHHHHHS-CTTTSCHHHHHHHHHHHHHTHHHHC-----CHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHhc-CccccCHHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHh-------------------------
Confidence 44566655543 2 24689999999999999998887532 34433333333333
Q ss_pred CCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc--chHHHH
Q 000146 874 SSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD--SNKNLV 951 (2052)
Q Consensus 874 ~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D--sN~~V~ 951 (2052)
+ .+++..|...+..+++.+...+.|. +.+++..|...+.. ......
T Consensus 556 -----------------------------~--~~v~~~A~~al~~l~~~~~~~l~p~-~~~ll~~l~~~l~~~~~~~~~~ 603 (971)
T 2x1g_F 556 -----------------------------N--SSMSAQATLGLKELCRDCQLQLKPY-ADPLLNACHASLNTGRMKNSDS 603 (971)
T ss_dssp -----------------------------H--SSCHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHSTTSCHHHH
T ss_pred -----------------------------C--hHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHcCCCCChHHH
Confidence 1 2234556666667666544444444 47777777777755 456788
Q ss_pred HHHHHHHHHHHHHhC-hhhHHhhhHHHHHHHHHhC----CC--cHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCcc
Q 000146 952 MATLITLGAVASAMG-PAVEKSSKGVLSDILKCLG----DN--KKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKL 1024 (2052)
Q Consensus 952 ~~Al~~l~~la~alg-~~~~~~~~~llp~ll~~l~----D~--k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~ 1024 (2052)
...+++++.++.+++ ..+.+|+..++++++..+. .. .+.-+.....+++.+.. +...+... .
T Consensus 604 ~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~----------~~~~l~~~-~ 672 (971)
T 2x1g_F 604 VRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST----------LFSSLNTD-V 672 (971)
T ss_dssp HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH----------HHHHHTC---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----------HHhhcCCC-c
Confidence 899999999998876 6677888888888887654 21 22223333344443321 11222210 0
Q ss_pred ChhHHHHH--HHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000146 1025 GAEGRKDL--FDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1091 (2052)
Q Consensus 1025 np~~R~~~--l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l 1091 (2052)
.+ .+.+. -.-+..++ ..+.+++.-++.... .+.+|.+.+..++..+...+|.+ +.+++
T Consensus 673 ~~-~~~~~~~~~~~~~~~------~~i~~~l~~~l~~~~-~~~~v~e~~~~~~~~~~~~~~~~-~~p~l 732 (971)
T 2x1g_F 673 DE-QATDQPIVQPVLLVM------QRTMPIFKRIAEMWV-EEIDVLEAACSAMKHAITNLRSS-FQPML 732 (971)
T ss_dssp ------------CCHHHH------HTTHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHHHC---CTHH
T ss_pred Cc-ccccccCCCchHHHH------HHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHhhhhh-ccccH
Confidence 00 00000 00000001 123334444443332 46789999999999999988875 56664
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-06 Score=120.22 Aligned_cols=500 Identities=12% Similarity=0.071 Sum_probs=285.4
Q ss_pred ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc----
Q 000146 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG---- 436 (2052)
Q Consensus 361 dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~---- 436 (2052)
.|..-+..+...|.+.+..++..+++.+..+... -.....+|.|+..+.+..+.|++.+..+|..+....
T Consensus 112 ~~~~~i~~lv~~L~~~~~~~r~~a~~~l~~~~~~------~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~ 185 (780)
T 2z6g_A 112 QFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDA------ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH 185 (780)
T ss_dssp --------------CCSCHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHH
T ss_pred cccccHHHHHHHhcCccHHHHHHHHHHHHhhhHH------HHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHH
Confidence 3444456677777777777778777777754321 233678899999999999999999999999987531
Q ss_pred -CCCHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000146 437 -CLNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 437 -~~~l~~ll~~l~~~L~~K-np~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
......+++.|+..|.+. ++.+|..++..|..+.. .... .... -...+|.|+.+|.+.++.||..|..+|..+..
T Consensus 186 ~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~-~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 186 AIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREG-LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263 (780)
T ss_dssp HHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cchh-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 011246788888888754 89999999999988443 2211 1111 13589999999999999999999999998886
Q ss_pred HhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCC
Q 000146 514 SVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPAS 593 (2052)
Q Consensus 514 ~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s 593 (2052)
...+. ++.+.+ . +
T Consensus 264 ~~~~~-------------~~~v~~---~-g-------------------------------------------------- 276 (780)
T 2z6g_A 264 HQEGA-------------KMAVRL---A-G-------------------------------------------------- 276 (780)
T ss_dssp HSTTH-------------HHHHHH---T-T--------------------------------------------------
T ss_pred CChhh-------------HHHHHH---c-C--------------------------------------------------
Confidence 54321 111111 0 0
Q ss_pred CCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccc
Q 000146 594 KKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQN 673 (2052)
Q Consensus 594 ~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~ 673 (2052)
+ -+.++..|.+.+|+.|..++..|..+.....+
T Consensus 277 ---------------------------------------~--------v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e 309 (780)
T 2z6g_A 277 ---------------------------------------G--------LQKMVALLNKTNVKFLAITTDCLQILAYGNQE 309 (780)
T ss_dssp ---------------------------------------H--------HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------------------------------------C--------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCChH
Confidence 0 02344555556666666665555533211000
Q ss_pred ------cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHH
Q 000146 674 ------LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTT 747 (2052)
Q Consensus 674 ------~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~ 747 (2052)
.....+.|++++.. .....+...+..++..+... ...+..
T Consensus 310 ~~~~i~~~~~i~~Lv~lL~~-----~~~~~~~~~a~~aL~~Ls~~----------------------~~~~~~------- 355 (780)
T 2z6g_A 310 SKLIILASGGPQALVNIMRT-----YTYEKLLWTTSRVLKVLSVC----------------------SSNKPA------- 355 (780)
T ss_dssp HHHHHHTTTHHHHHHHHHTT-----CCCHHHHHHHHHHHHHHHTS----------------------TTHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHhc-----CCHHHHHHHHHHHHHHhhcC----------------------hHHHHH-------
Confidence 00123344444321 01111222222333222210 001100
Q ss_pred HHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHH
Q 000146 748 FSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHK 827 (2052)
Q Consensus 748 l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~ 827 (2052)
+++ .-+++.|+..+ .+.++.++..++..|..+...... ......+++.+..+ +.+.++.||..|..+|+.|..
T Consensus 356 i~~----~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~i~~Lv~l-L~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 356 IVE----AGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHH----TTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCTT-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTS
T ss_pred HHH----hchHHHHHHHH-cCCchHHHHHHHHHHHHHhccchh-hhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHh
Confidence 000 01234444443 455777777777777776643322 22346788888888 999999999999999987743
Q ss_pred hhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCC-CCh
Q 000146 828 FVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES-PDW 906 (2052)
Q Consensus 828 ~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d-~~W 906 (2052)
.. +.....+ . +. + ..+.|+..+.+ .+|
T Consensus 429 ~~-~~~~~~i-----------~----~~---g---------------------------------~i~~Lv~lL~~~~~~ 456 (780)
T 2z6g_A 429 NN-YKNKMMV-----------C----QV---G---------------------------------GIEALVRTVLRAGDR 456 (780)
T ss_dssp SC-HHHHHHH-----------H----TT---T---------------------------------HHHHHHHHHHHHTTC
T ss_pred CC-HHHHHHH-----------H----HC---C---------------------------------CHHHHHHHHHccCCH
Confidence 21 1111100 0 00 0 01233444433 234
Q ss_pred -HHHHHHHHHHHHHHHhccc------cCCCCChhhHHHHHHhhhccchH-HHHHHHHHHHHHHHHHhChhhHHhh--hHH
Q 000146 907 -KVRLESIEAVNKILEEANK------RIQPAGTGELFGGLRGRLYDSNK-NLVMATLITLGAVASAMGPAVEKSS--KGV 976 (2052)
Q Consensus 907 -k~R~eale~L~~ll~~a~~------~I~~~~~~eL~~aL~~rL~DsN~-~V~~~Al~~l~~la~alg~~~~~~~--~~l 976 (2052)
.+|..|+..|..|...... .+. -...++.|...|.+.+. .|+..|+.+|+.|+. +......+ ..+
T Consensus 457 ~~v~~~Al~aL~nL~~~~~~~~~~~~~v~---~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~ 531 (780)
T 2z6g_A 457 EDITEPAICALRHLTSRHQDAEMAQNAVR---LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGA 531 (780)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHH---HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHH---HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCC
Confidence 7788888888776421000 000 02246778888877664 899999999999984 33322221 246
Q ss_pred HHHHHHHhCCCc----------------------HHHHHHHHHHHHHHHHhc------CchhhHHHHHHHHhcCccChhH
Q 000146 977 LSDILKCLGDNK----------------------KHMRECTLTVLDAWLAAV------HLDKMVPYVTTALTDAKLGAEG 1028 (2052)
Q Consensus 977 lp~ll~~l~D~k----------------------~~VR~aa~~aL~~i~~~~------~l~~ll~~l~~~L~~~k~np~~ 1028 (2052)
+|.+++.|.+.. ..++.++..||..+.... .-...++.|...|.+. ++.+
T Consensus 532 i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v 609 (780)
T 2z6g_A 532 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP--IENI 609 (780)
T ss_dssp HHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--CHHH
T ss_pred HHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--CHHH
Confidence 778877776533 346667777777653210 0123567788888876 5888
Q ss_pred HHHHHHHHHHHhccCCCC-Cch--hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1029 RKDLFDWLSKQLTGLSGF-PDA--AHLLKPASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1029 R~~~l~~L~~~l~~~~~~-~~~--~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
|..++..|..+... ... ..+ ...+.+|...+.|.+.+||+.|..+|..+...-+
T Consensus 610 ~~~a~~aL~~L~~~-~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 610 QRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 88888877765421 110 011 1245668888999999999999999998887665
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-08 Score=127.97 Aligned_cols=379 Identities=12% Similarity=0.077 Sum_probs=254.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhcc-cc-c-----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NL-D-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 715 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-~~-~-----~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~ 715 (2052)
+.++..|.+.++..|..|+..|..++.... +. . .....|+.+|. .+.+..+...++.+|..++.....
T Consensus 77 ~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~-----~~~~~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 77 PAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLT-----REDFPQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhC-----CCCCHHHHHHHHHHHHHHhCCCHH
Confidence 678899999999999999999998876532 11 0 12345566553 122377888888888887763211
Q ss_pred CchhhH-HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhCh--hH-----HHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 000146 716 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDHKNPKVLSEGILWMVSAV 785 (2052)
Q Consensus 716 ~~~~~~-~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~--~~-----Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i 785 (2052)
.....+ ..++|.|+.-+.+ ..++..|..+|..++..... .. +++.|+..+..+.++.++..++..|..+.
T Consensus 152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 111111 1367888887765 56899999999998864221 11 35566666546789999999998888877
Q ss_pred HHhCCCC-CChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCc
Q 000146 786 EDFGVSH-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPK 864 (2052)
Q Consensus 786 ~~fG~~~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~ 864 (2052)
....... .-...+++.+..+ +.+.++.||..|..+++.|-....... +.+-+
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~------------~~~~~-------------- 284 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDKI------------QAVIE-------------- 284 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHHH------------HHHHH--------------
T ss_pred cCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHHH------------HHHHH--------------
Confidence 5431111 1235678888888 999999999999998877653211111 00000
Q ss_pred cccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc
Q 000146 865 KTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY 944 (2052)
Q Consensus 865 r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~ 944 (2052)
..+.+.++..+.+.+|.+|..|+..|..+........+.-.-..+++.|...|.
T Consensus 285 --------------------------~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~ 338 (528)
T 4b8j_A 285 --------------------------AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT 338 (528)
T ss_dssp --------------------------TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH
T ss_pred --------------------------cCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc
Confidence 002356778888999999999999999887521110000001346788888888
Q ss_pred cc-hHHHHHHHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhHHH
Q 000146 945 DS-NKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPY 1014 (2052)
Q Consensus 945 Ds-N~~V~~~Al~~l~~la~alg~~~~~~~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l--------~~ll~~ 1014 (2052)
+. +..++..|+.+|+.|+..-........ ..++|.++..|.+....++..|..+|..++...+. ..+++.
T Consensus 339 ~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~ 418 (528)
T 4b8j_A 339 QNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKP 418 (528)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHH
Confidence 88 999999999999999863222222222 36789999999999999999999999999887321 245677
Q ss_pred HHHHHhcCccChhHHHHHHHHHHHHhccCCC--------CCchhh------hHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000146 1015 VTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--------FPDAAH------LLKPASIAMTDKSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1015 l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~--------~~~~~~------ll~pl~~~L~D~~~dVRkaA~~~L~~l~~ 1080 (2052)
+...|.+. ++.++..++..|...+..... ...+.. .+..+.....+.+.+|++.|..++..+..
T Consensus 419 L~~lL~~~--d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~ 496 (528)
T 4b8j_A 419 LCDLLICP--DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWM 496 (528)
T ss_dssp HHHGGGCS--CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 88888765 578888888887776643211 111111 23346666789999999999988876654
Q ss_pred H
Q 000146 1081 A 1081 (2052)
Q Consensus 1081 ~ 1081 (2052)
.
T Consensus 497 ~ 497 (528)
T 4b8j_A 497 D 497 (528)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.9e-07 Score=118.90 Aligned_cols=386 Identities=11% Similarity=0.037 Sum_probs=258.5
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchhH
Q 000146 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPL 95 (2052)
Q Consensus 16 l~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (2052)
|-+.+.+.+|..|..|-..|.+++....+ +....+ ... ...+.
T Consensus 79 lv~~L~s~~~~~~~~A~~~L~~l~s~~~~---~~~~~~------~~~----------------------------g~v~~ 121 (528)
T 4b8j_A 79 MIGGVYSDDNNLQLEATTQFRKLLSIERS---PPIEEV------IQS----------------------------GVVPR 121 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHTCSSS---CCHHHH------HHT----------------------------TCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCC---chHHHH------HHC----------------------------CCHHH
Confidence 46778899999999999999988754221 111111 000 11455
Q ss_pred HHHHhccCc-HHHHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhh--h-----
Q 000146 96 FKKTVADSN-APVQDKALDALIAYLKAADADAGRYA-KEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEA--V----- 165 (2052)
Q Consensus 96 ~~k~v~DsN-~~aqe~gl~al~~~l~~~~~~~~~~~-~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~--~----- 165 (2052)
+.+++.+.+ ..+|+.|+.+|..+...........+ ...++.|+.- |. ..+.+|+.|..++..+..... .
T Consensus 122 Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~ 200 (528)
T 4b8j_A 122 FVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKL-LGSSSDDVREQAVWALGNVAGDSPKCRDLVLA 200 (528)
T ss_dssp HHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHH-hcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH
Confidence 566777776 99999999999887753222111111 2467777765 55 688999999999988875421 1
Q ss_pred hhHHHHHHHHh-hccChhhHHHHHHHHHHHHHHhCCCC-cChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchh
Q 000146 166 DVFLDVMEKAI-KNKVAKAVVPAIDVMFQALSEFGAKI-IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPV 243 (2052)
Q Consensus 166 ~~v~e~Ll~~l-~~K~PKvv~~~l~~L~~~l~~FG~~~-i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l 243 (2052)
..+++.|+..+ .+.++.++..++.+|..+........ .-...+++.|..++.+.|..||..+..++..|.... +
T Consensus 201 ~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~--~-- 276 (528)
T 4b8j_A 201 NGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGT--N-- 276 (528)
T ss_dssp TTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSC--H--
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC--H--
Confidence 13456677777 66788999999888888775432211 123568899999999999999999888877665321 1
Q ss_pred hHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCc
Q 000146 244 KTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTP 323 (2052)
Q Consensus 244 ~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~k 323 (2052)
.. .+.+- +. + +
T Consensus 277 -~~---------~~~~~---~~------------------------------g-----------------------~--- 287 (528)
T 4b8j_A 277 -DK---------IQAVI---EA------------------------------G-----------------------V--- 287 (528)
T ss_dssp -HH---------HHHHH---HT------------------------------T-----------------------C---
T ss_pred -HH---------HHHHH---Hc------------------------------C-----------------------H---
Confidence 00 00010 00 0 0
Q ss_pred CccchhhhhcccCChHHHHHHHHHHHHHhcCCC-CCCCC-hHHHHHHHHHHhcCc-CHHHHHHHHHHHHHHHHHhhhcch
Q 000146 324 LEKSGFWEGVKATKWSERKDAVAELTKLASTKR-IAPGD-FTEVCRTLKKLITDV-NIAVAVEAIQAIGNLARGLRTHFS 400 (2052)
Q Consensus 324 l~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~k-i~~~d-y~~l~~~L~k~l~D~-N~~V~~~A~~~l~~La~~L~~~f~ 400 (2052)
+ +.+...+.+.+|..|..|+..|..++.... ....- -..+++.|...+.+. +..|+..|+.+|+.|+.+-.....
T Consensus 288 v--~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~ 365 (528)
T 4b8j_A 288 C--PRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQ 365 (528)
T ss_dssp H--HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred H--HHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHH
Confidence 0 235555677788889999999988874211 00000 024577888888877 999999999999999975333222
Q ss_pred hh-hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc
Q 000146 401 GS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS 473 (2052)
Q Consensus 401 ~~-~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~-l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~ 473 (2052)
.. -..++|.|+..+.+....|+..+..+|..+...+... . ..+++.|...|.+.++.++..++..|..++...
T Consensus 366 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 366 AVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 22 2367899999999999999999999999998751111 1 245677888899999999999999999988654
Q ss_pred Chh---------HHHHhhh--hHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 474 SKA---------AVLKVHK--DYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 474 ~~~---------~l~~~l~--~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
... .+...+. ..+..+..+.++.+++|++.|..++..++..
T Consensus 446 ~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 446 ETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC-
T ss_pred HHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCC
Confidence 220 1122222 2366788889999999999999988766543
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.81 E-value=5e-06 Score=113.52 Aligned_cols=517 Identities=13% Similarity=0.069 Sum_probs=298.8
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh-hhhhH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFL 406 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~l 406 (2052)
.+...|.+.+...|..++..+..+.. ..+ -...++.|.+.+.+.+..|+..|+.+|..|+........- ....+
T Consensus 119 ~lv~~L~~~~~~~r~~a~~~l~~~~~-~~i----~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~ 193 (780)
T 2z6g_A 119 TNVQRLAEPSQMLKHAVVNLINYQDD-AEL----ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQM 193 (780)
T ss_dssp -------CCSCHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHHhhhH-HHH----HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccCh
Confidence 57777888888888888888764421 111 1456777888888889999999999999999754321111 12368
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHH
Q 000146 407 LPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN-----LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLK 480 (2052)
Q Consensus 407 lp~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~-----l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~ 480 (2052)
++.|+..++.. .+.++..+..+|..+... ... -...++.|...|++.++.+|..++..|..+........ ..
T Consensus 194 i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~-~~ 271 (780)
T 2z6g_A 194 VSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK-MA 271 (780)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH-HH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH-HH
Confidence 99999999754 788999999999886542 000 12467788888999999999999999999876543221 11
Q ss_pred h-hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCC
Q 000146 481 V-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSG 559 (2052)
Q Consensus 481 ~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~ 559 (2052)
. -...+|.++++|.+.+..||..+..++..+.. ++......+-.-+. -..+...+...
T Consensus 272 v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~--~~~e~~~~i~~~~~--i~~Lv~lL~~~----------------- 330 (780)
T 2z6g_A 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGG--PQALVNIMRTY----------------- 330 (780)
T ss_dssp HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--TCHHHHHHHHTTTH--HHHHHHHHTTC-----------------
T ss_pred HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCC--HHHHHHHHhcC-----------------
Confidence 1 14588999999999999999999999986652 33221111110000 00111111100
Q ss_pred CCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhc
Q 000146 560 GSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGS 639 (2052)
Q Consensus 560 ~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ 639 (2052)
+.+.....+.
T Consensus 331 ---------------------------------------------------------------------~~~~~~~~a~- 340 (780)
T 2z6g_A 331 ---------------------------------------------------------------------TYEKLLWTTS- 340 (780)
T ss_dssp ---------------------------------------------------------------------CCHHHHHHHH-
T ss_pred ---------------------------------------------------------------------CHHHHHHHHH-
Confidence 0011100000
Q ss_pred cCcHHHHHhhh-cCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000146 640 LIPADTVGQLK-SAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 718 (2052)
Q Consensus 640 ll~~~l~~~L~-s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 718 (2052)
.++..|. +...+.. ++.. .....|+.+ +.+.+..+...++.+|..++.......
T Consensus 341 ----~aL~~Ls~~~~~~~~---------i~~~-----g~l~~Ll~l------L~~~~~~~~~~a~~~L~~L~~~~~~~~- 395 (780)
T 2z6g_A 341 ----RVLKVLSVCSSNKPA---------IVEA-----GGMQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE- 395 (780)
T ss_dssp ----HHHHHHHTSTTHHHH---------HHHT-----THHHHHGGG------TTCSCHHHHHHHHHHHHHHHTTCTTCS-
T ss_pred ----HHHHHhhcChHHHHH---------HHHh-----chHHHHHHH------HcCCchHHHHHHHHHHHHHhccchhhh-
Confidence 0111111 1111110 0000 012223322 344566778888888888776543321
Q ss_pred hhHHHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhCh-------hHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHh
Q 000146 719 KCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP-------GFIFERLYKIMKDHKN-PKVLSEGILWMVSAVEDF 788 (2052)
Q Consensus 719 ~~~~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~-------~~Vl~~L~~~l~~~Kn-pKv~~e~L~~L~~~i~~f 788 (2052)
....+++.|+.-+.+ ..++..|..+|..++..... .-.++.|+..+....+ ..++..++..|..+....
T Consensus 396 -~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~ 474 (780)
T 2z6g_A 396 -GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH 474 (780)
T ss_dssp -CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS
T ss_pred -hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 234578888876654 56888888888887653211 1246667776644333 478888888887664211
Q ss_pred CCC-----CCChHhHHHHHHhhCCCCCcH-HHHHHHHHHHHHHHHhhChhhHhhh--hhccHHHHHHHHHHHhcCCCCCC
Q 000146 789 GVS-----HLKLKDLIDFCKDTGLQSSAA-ATRNATIKLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGT 860 (2052)
Q Consensus 789 G~~-----~l~~k~li~~l~~~gL~~~n~-~VR~aA~~ll~~Ly~~~G~~l~~~L--~~lkP~ll~~Le~efeK~~~~~~ 860 (2052)
+.. .+-....++.+..+ |.+.+. .||.+|..+++.|.. ++.....+ .++-|.+.+.+......++.+..
T Consensus 475 ~~~~~~~~~v~~~~~l~~L~~l-L~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa 551 (780)
T 2z6g_A 475 QDAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 551 (780)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHcCCHHHHHHH-hcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHh
Confidence 110 00001235556666 777764 999999999999875 33333333 34566777777653322211000
Q ss_pred CCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhc-c-ccCCCCChhhHHHH
Q 000146 861 VVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEA-N-KRIQPAGTGELFGG 938 (2052)
Q Consensus 861 p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a-~-~~I~~~~~~eL~~a 938 (2052)
-+ .+.. + +. . +.....++..++..|..+.... + ..+.. ...++.
T Consensus 552 ~a----------------l~nq--~-------~~----~--~~~~~~v~~~a~~aL~~La~~~~~~~~l~~---~~~i~~ 597 (780)
T 2z6g_A 552 MG----------------GTQQ--Q-------FV----E--GVRMEEIVEACTGALHILARDIHNRIVIRG---LNTIPL 597 (780)
T ss_dssp ------------------------C-------CS----T--TCCHHHHHHHHHHHHHHHTTSHHHHHHHHH---TCCHHH
T ss_pred hc----------------cccc--h-------hh----c--ccChHHHHHHHHHHHHHHhcChhhHHHHHH---CCcHHH
Confidence 00 0000 0 00 0 0011234556666666654210 0 00100 235778
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH--HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG--VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~--llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
|...|.+.+..|+..|+.+|..++. .+.....+.. .++.++..+.+.+..||..|..+|..+....+
T Consensus 598 Lv~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 598 FVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 8999999999999999999998862 2334443333 67889999999999999999999999887654
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.79 E-value=0.00037 Score=97.54 Aligned_cols=330 Identities=9% Similarity=0.055 Sum_probs=185.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcc----ccc------hHHHHHHHHHhcCCCCccc---HHHHHHHHHHHHHHHHHHcCCCch
Q 000146 652 AVWKERLEAISSLRQQVEAVQ----NLD------QSVEILVRLVCMLPGWSEK---NVQVQQQVIEVINYLAATATKFPK 718 (2052)
Q Consensus 652 ~~Wk~Rl~ale~L~~~v~~~~----~~~------~~~~~Lv~~L~~~pg~~Ds---N~qV~~~~Le~l~~l~~~~~~~~~ 718 (2052)
.+|+.|-+|+-.+..+..... ... .-.+.++..+ .|.+.|. +..|...++.++..+.+.. ..
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v--~p~l~~~~~~~p~vr~~a~~~lg~~~~~~---~~ 491 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEI--APDLTSNNIPHIILRVDAIKYIYTFRNQL---TK 491 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHT--HHHHHCSSCSCHHHHHHHHHHHHHTGGGS---CH
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHh--HHHhcCCCCCCceehHHHHHHHHHHHhhC---CH
Confidence 589999999999987764321 000 1112223222 1344555 8889999998888777653 45
Q ss_pred hhHHHHHHHHHHhhhch--hhhHHHHHHHHHHHhhhC----------h-------hHHHHHHHHHHhhCCC---HH--HH
Q 000146 719 KCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVG----------P-------GFIFERLYKIMKDHKN---PK--VL 774 (2052)
Q Consensus 719 ~~~~~il~~LveKlgd~--K~r~~a~e~L~~l~E~~~----------~-------~~Vl~~L~~~l~~~Kn---pK--v~ 774 (2052)
..+..+++.++..+.|. .++..|..+|..+++... . ..+++.++..+ +..+ ++ ..
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll-~~~~~~~~~~~~~ 570 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALI-LKHGSSPEKLAEN 570 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHH-HTTCCCHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHH-HhccCCCCccccc
Confidence 67888999999988884 579999999999988421 1 23444454443 2221 22 33
Q ss_pred HHHHHHHHHHHHHhCCCCCC-hHhHHHH----HHhhCC-CCCcHHHHHHHHHHHHHHHHhhChh-hHhhhhhccHHHHHH
Q 000146 775 SEGILWMVSAVEDFGVSHLK-LKDLIDF----CKDTGL-QSSAAATRNATIKLLGALHKFVGPD-IKGFLADVKPALLSA 847 (2052)
Q Consensus 775 ~e~L~~L~~~i~~fG~~~l~-~k~li~~----l~~~gL-~~~n~~VR~aA~~ll~~Ly~~~G~~-l~~~L~~lkP~ll~~ 847 (2052)
...+..|..++..++....+ ...+++. +... . +..++..+..+..+++.+.+..|+. +..+.+.+-|.+...
T Consensus 571 e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~-~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~i 649 (960)
T 1wa5_C 571 EFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIM-AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTV 649 (960)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 46667777777777654332 2233333 3332 2 3457889988999999999887764 344445555555554
Q ss_pred HHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHH--hhcCCCChHHHHHHHHHHHHHHHhccc
Q 000146 848 LDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLV--KSLESPDWKVRLESIEAVNKILEEANK 925 (2052)
Q Consensus 848 Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll--~~l~d~~Wk~R~eale~L~~ll~~a~~ 925 (2052)
++..........-..-....+.. +.+++ ....+-+-++ ..+....|- -..+..|...+.....
T Consensus 650 L~~~~~~~~~~~~~i~~~l~~~~-----------~~~~~--~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~~~~~~~~ 714 (960)
T 1wa5_C 650 FSEDIQEFIPYVFQIIAFVVEQS-----------ATIPE--SIKPLAQPLLAPNVWELKGNI--PAVTRLLKSFIKTDSS 714 (960)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHHC-----------SSCCT--TTGGGHHHHTSGGGGCCTTTH--HHHHHHHHHHHHHHGG
T ss_pred HHhhhHhhHHHHHHHHHHHHHhc-----------cCCCH--HHHHHHHHHcCHHHhcCCCCc--hhHHHHHHHHHHhChH
Confidence 43211000000000000000000 00111 0111222222 222222222 2344556666553323
Q ss_pred cCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChh-hHHhhhHHHHHHHHHhCCCc-HHHHHHHHHHHHHHH
Q 000146 926 RIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPA-VEKSSKGVLSDILKCLGDNK-KHMRECTLTVLDAWL 1003 (2052)
Q Consensus 926 ~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~-~~~~~~~llp~ll~~l~D~k-~~VR~aa~~aL~~i~ 1003 (2052)
.+.. ...++..+...+.+.+. -..++.+++.++..+|.. |.+|+..+++.++..+...+ ..++......+..++
T Consensus 715 ~~~~--~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~ 790 (960)
T 1wa5_C 715 IFPD--LVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLIS 790 (960)
T ss_dssp GCSC--SHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHH
Confidence 3332 24566666666655432 378999999999999999 99999999999999987653 445545444444444
Q ss_pred HhcC
Q 000146 1004 AAVH 1007 (2052)
Q Consensus 1004 ~~~~ 1007 (2052)
-..+
T Consensus 791 ~~~~ 794 (960)
T 1wa5_C 791 NKLG 794 (960)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 3334
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-05 Score=107.49 Aligned_cols=321 Identities=12% Similarity=0.101 Sum_probs=173.0
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhhhhh---hH
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELEAVD---VF 168 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~~~~---~v 168 (2052)
..-+++.+.+.+....-.++.=+..+ -..|.+......+++ |++. .+-..|..+.-.+..|.+. +++ -+
T Consensus 36 ~~~ir~~l~~~~~~~k~~~l~kli~~-~~~G~d~~~~~~~vi-----k~~~s~~~~~Krl~Yl~~~~~~~~-~~e~~~l~ 108 (618)
T 1w63_A 36 CAAIRSSFREEDNTYRCRNVAKLLYM-HMLGYPAHFGQLECL-----KLIASQKFTDKRIGYLGAMLLLDE-RQDVHLLM 108 (618)
T ss_dssp HHHHHHHHTTTCTTTHHHHHHHHHHH-HHTTCCCGGGHHHHH-----HHHHSSSHHHHHHHHHHHHHHCCC-CHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHH-HHcCCCCcchHHHHH-----HHHcCCchHHHHHHHHHHHHHhCC-CcHHHHHH
Confidence 33445555555544444444444333 223332222222343 3344 4666777665555555543 344 35
Q ss_pred HHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHH
Q 000146 169 LDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILF 248 (2052)
Q Consensus 169 ~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~ 248 (2052)
+..|.+.+++.||-++..++.+|..+ |... -...+++.+.+++.|.++.||..|..++..+|+.. ++.+... +
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i----~~~~-~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v~~~-~ 181 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCM----GSSE-MCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELMEMF-L 181 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHH----CCHH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGGGGG-G
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhc----CCHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHHHHH-H
Confidence 67788899999999999998888764 3311 13567889999999999999999999999999865 3322111 0
Q ss_pred hhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccch
Q 000146 249 EKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSG 328 (2052)
Q Consensus 249 ~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~ 328 (2052)
+.+.
T Consensus 182 ~~l~---------------------------------------------------------------------------- 185 (618)
T 1w63_A 182 PATK---------------------------------------------------------------------------- 185 (618)
T ss_dssp GGTT----------------------------------------------------------------------------
T ss_pred HHHH----------------------------------------------------------------------------
Confidence 1100
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcC-CCC---CCCChHHHHHHHHHHhc-----------CcCHHHHHHHHHHHHHHHH
Q 000146 329 FWEGVKATKWSERKDAVAELTKLAST-KRI---APGDFTEVCRTLKKLIT-----------DVNIAVAVEAIQAIGNLAR 393 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~-~ki---~~~dy~~l~~~L~k~l~-----------D~N~~V~~~A~~~l~~La~ 393 (2052)
+.+.+.+-..+..|+..|..+... |.. ...-...++..|...+. ..+.-+....+++++.++.
T Consensus 186 --~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 186 --NLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp --TSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred --HHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 001111112222333333333210 000 00011223333333221 2345555556667666654
Q ss_pred HhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHhhcCChHHHHHHHHHHHHHH
Q 000146 394 GLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL---VDVVEDVKTSVKNKVPLVRSLTLNWVTFCI 470 (2052)
Q Consensus 394 ~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l---~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l 470 (2052)
.- +........++..++..+.-.+..-..-..+|+.+++.- .... ...++.+...+.++++.+|.-++..|..+.
T Consensus 264 ~~-~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l-~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~ 341 (618)
T 1w63_A 264 ND-DDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI-KSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTV 341 (618)
T ss_dssp TC-HHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Confidence 21 111112223444444433221211122223344444432 1111 235566667788899999999999999988
Q ss_pred HhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 471 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 471 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
...+. .+....+.+..|+.|.+..||..|.+++..+.
T Consensus 342 ~~~p~-----~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~ 378 (618)
T 1w63_A 342 QTDHN-----AVQRHRSTIVDCLKDLDVSIKRRAMELSFALV 378 (618)
T ss_dssp HHHHH-----HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHC
T ss_pred hhCHH-----HHHHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence 75432 23456678889999999999999988776543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=98.67 E-value=7.6e-07 Score=120.77 Aligned_cols=293 Identities=12% Similarity=0.185 Sum_probs=213.5
Q ss_pred HHHHHHhhcC-C-ChhHHHHHHHHHHHHHhh----hhhhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcChHH
Q 000146 134 CDAIAAKCLT-G-RPKTVEKAQAVFMLWVEL----EAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIPPKR 207 (2052)
Q Consensus 134 i~~LieK~L~-~-r~~tk~~A~~~~l~~~e~----~~~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~ 207 (2052)
+..++.+ +. + ....++.|..+.-.+... .-+..+++.|.+++.+|+.- ++++..+..+.+.||... +..+
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~-~~e~ 91 (986)
T 2iw3_A 16 LEELFQK-LSVATADNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSP-SVEP 91 (986)
T ss_dssp HHHHHHH-HTTCCTTTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCT-TTHH
T ss_pred HHHHHhh-ccccchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCC-Cccc
Confidence 3335555 43 2 444555554444443311 11347889999999887544 899999999998898732 2233
Q ss_pred ----HHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHh
Q 000146 208 ----ILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKE 283 (2052)
Q Consensus 208 ----il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~ 283 (2052)
+++.+...++|.++.||++|...+..|+..+.+.+++..| |.
T Consensus 92 ~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~-----~~----------------------------- 137 (986)
T 2iw3_A 92 YIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALL-----PH----------------------------- 137 (986)
T ss_dssp HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHH-----HH-----------------------------
T ss_pred chHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHH-----HH-----------------------------
Confidence 4577777888999999999999999999888654431111 11
Q ss_pred hhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhc-ccCChHHHHHHHHHHHHHhc-CCCCCCCC
Q 000146 284 LGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGV-KATKWSERKDAVAELTKLAS-TKRIAPGD 361 (2052)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l-~s~kWkeR~eaL~~L~~L~~-~~ki~~~d 361 (2052)
+++.+ .+.||+.+..||..+..++. .|......
T Consensus 138 ---------------------------------------------~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~ 172 (986)
T 2iw3_A 138 ---------------------------------------------LTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALR 172 (986)
T ss_dssp ---------------------------------------------HHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred ---------------------------------------------HHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 11122 24589999999999999884 45444456
Q ss_pred hHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-----
Q 000146 362 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG----- 436 (2052)
Q Consensus 362 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~----- 436 (2052)
+.++++.+..++-|....|...|..++..+|..+++. -+..++|.|++.+.+... .-+|++.+....
T Consensus 173 ~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~---d~~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v 244 (986)
T 2iw3_A 173 MPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNK---DIERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEV 244 (986)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCT---TTGGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCC
T ss_pred ccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCc---chhhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeee
Confidence 7899999999999999999999999999999888753 344457888888877743 345666665431
Q ss_pred -CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc-ChhHHHHhhhhHHHHHHHhh-cCCChHHHHHHHHHHHHHHH
Q 000146 437 -CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECL-NDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 437 -~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~k~l-~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
..+|.-++|-|..+|+.+...+|+.+.-.+.++.+-. ++....++++.++|.+.+.. +-++|++|+.|.+|+.++.+
T Consensus 245 ~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 245 TPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp CHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 1236778899999999999999999999998876654 45566688999999999977 57899999999999999987
Q ss_pred HhCC
Q 000146 514 SVGM 517 (2052)
Q Consensus 514 ~~Ge 517 (2052)
+-+.
T Consensus 325 ~~~~ 328 (986)
T 2iw3_A 325 VGNV 328 (986)
T ss_dssp HHTC
T ss_pred hhcc
Confidence 7664
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.3e-05 Score=103.27 Aligned_cols=467 Identities=13% Similarity=0.052 Sum_probs=273.4
Q ss_pred hhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcC
Q 000146 402 SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL------NLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSS 474 (2052)
Q Consensus 402 ~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~------~l~~ll~~l~~~L~~K-np~vR~~~l~~L~~~l~~~~ 474 (2052)
+....+|.|+..+++..+.|+..+..+|..+... .. ....+++.+...|.+. ++.+|..++..|..+.. ..
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~-~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~~ 88 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HR 88 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-TTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-SH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCC-ChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-Ch
Confidence 3445688999999999999999999999999875 11 1235678888888864 89999999998886433 22
Q ss_pred hhHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCc
Q 000146 475 KAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSA 553 (2052)
Q Consensus 475 ~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~ 553 (2052)
. ...... ...+|.++.+|.+.++.||..|..+|..+.....+. +..+.+ . +
T Consensus 89 ~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~-------------~~~v~~---~-g---------- 140 (644)
T 2z6h_A 89 E-GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------------KMAVRL---A-G---------- 140 (644)
T ss_dssp H-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH-------------HHHHHH---T-T----------
T ss_pred h-hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh-------------HHHHHH---C-C----------
Confidence 1 111111 358899999999999999999999998887654321 011110 0 0
Q ss_pred ccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHH
Q 000146 554 RVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEI 633 (2052)
Q Consensus 554 ~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~ 633 (2052)
+
T Consensus 141 -------------------------------------------------------------------------------~ 141 (644)
T 2z6h_A 141 -------------------------------------------------------------------------------G 141 (644)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred HHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH
Q 000146 634 ESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 707 (2052)
Q Consensus 634 e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~------~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~ 707 (2052)
-+.++..|.+.+|+.+..++..|..+.....+. ....+.|++++... ....+...++.++.
T Consensus 142 --------i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~-----~~~~~~~~a~~~L~ 208 (644)
T 2z6h_A 142 --------LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-----TYEKLLWTTSRVLK 208 (644)
T ss_dssp --------HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC-----CCHHHHHHHHHHHH
T ss_pred --------hHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC-----ChHHHHHHHHHHHH
Confidence 023445555566666666555555443211000 01133444444311 11222333333332
Q ss_pred HHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Q 000146 708 YLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVED 787 (2052)
Q Consensus 708 ~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~ 787 (2052)
.+.. +...+.. +.+. -+++.+++.+ .+.++.++..++..|..+...
T Consensus 209 nLs~----------------------~~~~~~~-------l~~~----g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~ 254 (644)
T 2z6h_A 209 VLSV----------------------CSSNKPA-------IVEA----GGMQALGLHL-TDPSQRLVQNCLWTLRNLSDA 254 (644)
T ss_dssp HHTT----------------------CTTHHHH-------HHHT----THHHHHHTTT-TCSCHHHHHHHHHHHHHHGGG
T ss_pred HHhc----------------------CcccHHH-------HHHC----CCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhc
Confidence 2211 0111111 0110 1344445543 455777887777777776543
Q ss_pred hCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccc
Q 000146 788 FGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTV 867 (2052)
Q Consensus 788 fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~ 867 (2052)
. ......+.+++.+..+ +.+.++.||..|..++..|... ++..+. .+.+ . +
T Consensus 255 ~-~~~~~~~~~i~~Lv~l-L~~~d~~v~~~a~~aL~~L~~~-~~~~~~-----------~v~~----~-g---------- 305 (644)
T 2z6h_A 255 A-TKQEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCN-NYKNKM-----------MVCQ----V-G---------- 305 (644)
T ss_dssp C-TTCCSCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTT-CHHHHH-----------HHHH----T-T----------
T ss_pred c-hhhhhhhhHHHHHHHH-HcCCCHHHHHHHHHHHHHHHcC-CHHHHH-----------HHHH----c-C----------
Confidence 2 2223346788888888 9999999999999999888542 111111 1100 0 0
Q ss_pred ccccccCCCCCCCCCCCCcccccccccHHHHhhcCC--CChHHHHHHHHHHHHHHHhcc--ccCCCCC-hhhHHHHHHhh
Q 000146 868 RASESTSSVSSGGSDGLPREDISGKFTPTLVKSLES--PDWKVRLESIEAVNKILEEAN--KRIQPAG-TGELFGGLRGR 942 (2052)
Q Consensus 868 r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d--~~Wk~R~eale~L~~ll~~a~--~~I~~~~-~~eL~~aL~~r 942 (2052)
..+.|+..+.+ ..+.+|..|+..|..+..... ...+... -...++.|...
T Consensus 306 -------------------------~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l 360 (644)
T 2z6h_A 306 -------------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL 360 (644)
T ss_dssp -------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT
T ss_pred -------------------------CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH
Confidence 11233333332 237888888888887753100 0000000 02357788888
Q ss_pred hccch-HHHHHHHHHHHHHHHHHhChhhHHh--hhHHHHHHHHHhCCC----------------------cHHHHHHHHH
Q 000146 943 LYDSN-KNLVMATLITLGAVASAMGPAVEKS--SKGVLSDILKCLGDN----------------------KKHMRECTLT 997 (2052)
Q Consensus 943 L~DsN-~~V~~~Al~~l~~la~alg~~~~~~--~~~llp~ll~~l~D~----------------------k~~VR~aa~~ 997 (2052)
|.+.+ ..++..|+.+|+.|+.. ....+. -..++|.+++.+.+. ...|+.++..
T Consensus 361 L~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~ 438 (644)
T 2z6h_A 361 LHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG 438 (644)
T ss_dssp TSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHH
T ss_pred hCccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHH
Confidence 87764 68999999999988753 221111 234677777777653 3456677777
Q ss_pred HHHHHHHhcC------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCC-ch--hhhHHHHHhhcCCCCHHHH
Q 000146 998 VLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DA--AHLLKPASIAMTDKSSDVR 1068 (2052)
Q Consensus 998 aL~~i~~~~~------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~-~~--~~ll~pl~~~L~D~~~dVR 1068 (2052)
+|..++.... -...++.+...|.+. ++.++..++..|...... +... .+ ...+.+|...+.|.+++||
T Consensus 439 aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~l~~~-~~~~~~i~~~g~l~~L~~ll~~~~~~vr 515 (644)
T 2z6h_A 439 ALHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGVLCELAQD-KEAAEAIEAEGATAPLTELLHSRNEGVA 515 (644)
T ss_dssp HHHHHTTSHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTS-HHHHHHHHHTTCHHHHHHHTTCSCHHHH
T ss_pred HHHHHhcCHHHHHHHHhCCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcC-HHHHHHHHHcCChhHHHHHHcCCCHHHH
Confidence 7775543211 123567788888765 577888888777764421 1100 00 1235668888999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 000146 1069 KAAEACIVEILRAGG 1083 (2052)
Q Consensus 1069 kaA~~~L~~l~~~~G 1083 (2052)
++|..+|..+...-+
T Consensus 516 ~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 516 TYAAAVLFRMSEDKP 530 (644)
T ss_dssp HHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHhccCc
Confidence 999999988766554
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=5.2e-05 Score=101.36 Aligned_cols=486 Identities=13% Similarity=0.061 Sum_probs=284.7
Q ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh-hhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC---
Q 000146 365 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN--- 439 (2052)
Q Consensus 365 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~--- 439 (2052)
.+..|.+.+.+.+..|+..|+.+|+.|+..-.....-. ...+++.|+..+.+. .+.++..+..+|..+... ...
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~ 93 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLA 93 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHH
Confidence 35666667778899999999999999997654221111 236789999999865 788999888888876542 000
Q ss_pred --HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 440 --LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 440 --l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
-...++.+...+++.++.++..++..|..+........ .... ...+|.++++|.+.++.++..+..+|..+.. +
T Consensus 94 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~-~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~--~ 170 (644)
T 2z6h_A 94 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK-MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--G 170 (644)
T ss_dssp HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH-HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--T
T ss_pred HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH-HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHh--c
Confidence 02467788888999999999999999999877643221 1122 4689999999999999999999999987764 3
Q ss_pred ChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCC
Q 000146 517 MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 596 (2052)
Q Consensus 517 e~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~ 596 (2052)
.......+-.... -..+.+.+...
T Consensus 171 ~~~~~~~i~~~g~--v~~Lv~lL~~~------------------------------------------------------ 194 (644)
T 2z6h_A 171 NQESKLIILASGG--PQALVNIMRTY------------------------------------------------------ 194 (644)
T ss_dssp CHHHHHHHHHTTH--HHHHHHHHTTC------------------------------------------------------
T ss_pred CcHHHHHHHHcCC--hHHHHHHHHcC------------------------------------------------------
Confidence 2211111111000 01111111100
Q ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhc-CCHHHHHHHHHHHHHHHHhccccc
Q 000146 597 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKS-AVWKERLEAISSLRQQVEAVQNLD 675 (2052)
Q Consensus 597 ~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s-~~Wk~Rl~ale~L~~~v~~~~~~~ 675 (2052)
+.+++...+. .++..|.. ..-+.. ++..
T Consensus 195 --------------------------------~~~~~~~~a~-----~~L~nLs~~~~~~~~---------l~~~----- 223 (644)
T 2z6h_A 195 --------------------------------TYEKLLWTTS-----RVLKVLSVCSSNKPA---------IVEA----- 223 (644)
T ss_dssp --------------------------------CCHHHHHHHH-----HHHHHHTTCTTHHHH---------HHHT-----
T ss_pred --------------------------------ChHHHHHHHH-----HHHHHHhcCcccHHH---------HHHC-----
Confidence 0011100000 11111111 111100 0000
Q ss_pred hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhC
Q 000146 676 QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG 753 (2052)
Q Consensus 676 ~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~ 753 (2052)
.....|+.+ +.+.+..+...++.+|..+....... .....+++.|+.-+.+ ..++..+..+|..++....
T Consensus 224 g~l~~L~~l------l~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~ 295 (644)
T 2z6h_A 224 GGMQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 295 (644)
T ss_dssp THHHHHHTT------TTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred CCHHHHHHH------HhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 012233333 34456778888888888876553322 1234577888776654 5688888888888876321
Q ss_pred h-------hHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHhCCCC-----CChHhHHHHHHhhCCCCCc-HHHHHHHH
Q 000146 754 P-------GFIFERLYKIMKDHK-NPKVLSEGILWMVSAVEDFGVSH-----LKLKDLIDFCKDTGLQSSA-AATRNATI 819 (2052)
Q Consensus 754 ~-------~~Vl~~L~~~l~~~K-npKv~~e~L~~L~~~i~~fG~~~-----l~~k~li~~l~~~gL~~~n-~~VR~aA~ 819 (2052)
. .-+++.|+..+.... .+.++..++..|..+....+... +-....++.+..+ |.+.+ +.||.+|.
T Consensus 296 ~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~l-L~~~~~~~v~~~a~ 374 (644)
T 2z6h_A 296 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATV 374 (644)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHT-TSTTCCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHH-hCccCchHHHHHHH
Confidence 1 114666777664433 38899998888887753211100 0001346666676 88775 79999999
Q ss_pred HHHHHHHHhhChhhHhhh--hhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHH
Q 000146 820 KLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 897 (2052)
Q Consensus 820 ~ll~~Ly~~~G~~l~~~L--~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~l 897 (2052)
.+++.|... +.....+ .+.-|.+.+.+.....+++.+..-+ -++ .+...
T Consensus 375 ~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~a-----l~n----------~~~~~------------ 425 (644)
T 2z6h_A 375 GLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG-----GTQ----------QQFVE------------ 425 (644)
T ss_dssp HHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-------------------------CC------------
T ss_pred HHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhc-----ccc----------chhcc------------
Confidence 999888653 3222222 4556777777766544443211000 000 00000
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh--
Q 000146 898 VKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK-- 974 (2052)
Q Consensus 898 l~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~-- 974 (2052)
+..+..++..++..|..+.... ...... -...++.|...|.+.+..|+..|+.++..++.. +.....+.
T Consensus 426 ----~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~i~~~ 497 (644)
T 2z6h_A 426 ----GVRMEEIVEGCTGALHILARDV--HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAE 497 (644)
T ss_dssp ----SSCHHHHHHHHHHHHHHHTTSH--HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--HHHHHHHHHT
T ss_pred ----cccHHHHHHHHHHHHHHHhcCH--HHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC--HHHHHHHHHc
Confidence 0112345556666666554311 000000 134677888888999999999999999988742 33333222
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC
Q 000146 975 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
..++.+...+.+.++.||.+|..+|..+....+
T Consensus 498 g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~~ 530 (644)
T 2z6h_A 498 GATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 530 (644)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTSC
T ss_pred CChhHHHHHHcCCCHHHHHHHHHHHHHHhccCc
Confidence 246788899999999999999999998876543
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00071 Score=94.74 Aligned_cols=333 Identities=11% Similarity=0.102 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhh--------chhhhHHHHHHHHHHHhhh-----C---------h
Q 000146 697 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA--------DIKTRAHAMKCLTTFSEAV-----G---------P 754 (2052)
Q Consensus 697 qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg--------d~K~r~~a~e~L~~l~E~~-----~---------~ 754 (2052)
.+...+.+++..++..+ .+..+..+++.+-..+. +-+.|+.|.-++..+++.. + .
T Consensus 376 s~R~aa~~~L~~l~~~~---~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l 452 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKN---EVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNV 452 (960)
T ss_dssp CHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCH
T ss_pred CcHHHHHHHHHHHHHHc---chhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccH
Confidence 35556666777776664 23445555665555444 2367899988899998642 1 1
Q ss_pred -hHHHHHHHHHHhhCC---CHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhC
Q 000146 755 -GFIFERLYKIMKDHK---NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVG 830 (2052)
Q Consensus 755 -~~Vl~~L~~~l~~~K---npKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G 830 (2052)
.++...+++.+ .+. +|.+|..++..+++..+.+... ....+++.+... +.++++.||.+|..++..+-....
T Consensus 453 ~~~l~~~v~p~l-~~~~~~~p~vr~~a~~~lg~~~~~~~~~--~l~~~l~~l~~~-L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 453 VDFFTKEIAPDL-TSNNIPHIILRVDAIKYIYTFRNQLTKA--QLIELMPILATF-LQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHTHHHH-HCSSCSCHHHHHHHHHHHHHTGGGSCHH--HHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhHHHh-cCCCCCCceehHHHHHHHHHHHhhCCHH--HHHHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhccc
Confidence 12334456655 444 9999999998888876654221 245677777665 899999999999999987765322
Q ss_pred -----------hhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHh
Q 000146 831 -----------PDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVK 899 (2052)
Q Consensus 831 -----------~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~ 899 (2052)
..+.+|+.. +++.|-.-+++... .| .
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~----ll~~L~~ll~~~~~----~~-------------------------------~---- 565 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEI----LLKNLIALILKHGS----SP-------------------------------E---- 565 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHH----HHHHHHHHHHTTCC----CH-------------------------------H----
T ss_pred ccccccccccHHHhhhhHHH----HHHHHHHHHHhccC----CC-------------------------------C----
Confidence 223344433 33333333332210 00 0
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc-----cchHHHHHHHHHHHHHHHHHhCh-hhHHhh
Q 000146 900 SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-----DSNKNLVMATLITLGAVASAMGP-AVEKSS 973 (2052)
Q Consensus 900 ~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~-----DsN~~V~~~Al~~l~~la~alg~-~~~~~~ 973 (2052)
+-.+...+++.+..++......+.|. +..++..|..++. ..|+.+...++++|+.++.+.++ .+.++.
T Consensus 566 -----~~~~~e~l~~al~~vv~~~~~~~~p~-~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~ 639 (960)
T 1wa5_C 566 -----KLAENEFLMRSIFRVLQTSEDSIQPL-FPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV 639 (960)
T ss_dssp -----HHTSCHHHHHHHHHHHHHHTTTTGGG-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred -----cccccHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 00011256777777777555666664 4677777666552 35778888899999999998664 577888
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-C----chhhHHHHH--HHHhcCccChhHHHHHHHHHHHHhccCCCC
Q 000146 974 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-H----LDKMVPYVT--TALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1046 (2052)
Q Consensus 974 ~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~-~----l~~ll~~l~--~~L~~~k~np~~R~~~l~~L~~~l~~~~~~ 1046 (2052)
..++|.+...|..........+...+..++... + +..++|.+. ..++.. ..-..++..|..++......
T Consensus 640 ~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~ 715 (960)
T 1wa5_C 640 DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELK----GNIPAVTRLLKSFIKTDSSI 715 (960)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCT----TTHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCC----CCchhHHHHHHHHHHhChHH
Confidence 899999988887666667777888888777664 2 234455444 333321 11123333444333221110
Q ss_pred -CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHh
Q 000146 1047 -PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNL 1091 (2052)
Q Consensus 1047 -~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l 1091 (2052)
..+..++..+..++.++.. +..|..++..+..++|.+.+.+++
T Consensus 716 ~~~~~~~l~~~~~~~~~~~~--~~~a~~ll~~i~~~~~~~~~~~yl 759 (960)
T 1wa5_C 716 FPDLVPVLGIFQRLIASKAY--EVHGFDLLEHIMLLIDMNRLRPYI 759 (960)
T ss_dssp CSCSHHHHHHHHHHHTCTTT--HHHHHHHHHHHHHHSCHHHHGGGH
T ss_pred HHHHHHHHHHHHHHhCCCcc--cchHHHHHHHHHHHCCHHHHHHHH
Confidence 0012233334556667664 378899999999999987677775
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00016 Score=96.95 Aligned_cols=648 Identities=12% Similarity=0.068 Sum_probs=354.8
Q ss_pred ChhHHHHHHHHHHHHHhhhh--hhhHH-----HHHHHHhhccChhhHHHHHHHHHHHHHHhCC---CCc-----------
Q 000146 145 RPKTVEKAQAVFMLWVELEA--VDVFL-----DVMEKAIKNKVAKAVVPAIDVMFQALSEFGA---KII----------- 203 (2052)
Q Consensus 145 r~~tk~~A~~~~l~~~e~~~--~~~v~-----e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~---~~i----------- 203 (2052)
.+.+.-.|+.++..+++-.. ...++ +.+...+..++++++.++..++..++..+-. +..
T Consensus 63 ~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (810)
T 3now_A 63 DQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRN 142 (810)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHT
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhh
Confidence 46666667666666655431 22333 3445667889999999888888877776542 221
Q ss_pred --ChHHHHhhhhhhhCCCC--hhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccC-----CCCCCc
Q 000146 204 --PPKRILKMLPELFDHQD--QNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSG-----TARPTR 274 (2052)
Q Consensus 204 --~~k~il~~l~~ll~~~d--k~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~-----~~~p~R 274 (2052)
.++.++..|...+.+.. ...|+.+++++.--..+-..+........ + -..+-|+-. ..++. ..+.+-
T Consensus 143 ~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~-g~~~~l~v~-~~~~~~~~~~~~~~~~ 218 (810)
T 3now_A 143 NREIDTLLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEI--R-GLCRLLDVC-SELEDYKYESAMDITG 218 (810)
T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHT--T-HHHHHHHHH-TCCSSSCCSSCCCCCT
T ss_pred hhHHHHHHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhH--h-hHHHHHHHH-hcCccccccccCCCCh
Confidence 25678888888888764 68999999998765532211111111111 1 111222211 11110 001111
Q ss_pred cchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCC---cccccCcCccchhh-hhcccCChHHHHHHHHHHHH
Q 000146 275 KIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVD---PVDILTPLEKSGFW-EGVKATKWSERKDAVAELTK 350 (2052)
Q Consensus 275 ~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~---~vdIl~kl~~~~f~-~~l~s~kWkeR~eaL~~L~~ 350 (2052)
-+|.+..--... -||-+. .-+.+.++. ++|. .++....-..+..|...+..
T Consensus 219 ~~r~~~~~~l~~------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~alt~ 273 (810)
T 3now_A 219 SSSTIASVCLAR------------------------IYENMYYDEAKARFTDQI-DEYIKDKLLAPDMESKVRVTVAITA 273 (810)
T ss_dssp THHHHHHHHHHH------------------------HHHTCCSHHHHHHHHHHH-HHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH------------------------HHHHhccchhHHHHHHHH-HHHHHHHhccCChHhHHHHHHHHHH
Confidence 122221100000 010000 112222222 2333 34556667777888888887
Q ss_pred HhcCC-CCCCCCh--HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh-hhhHHHHHHHHhccCcHHHHHHHH
Q 000146 351 LASTK-RIAPGDF--TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLLPVLLEKLKEKKPTVAESLT 426 (2052)
Q Consensus 351 L~~~~-ki~~~dy--~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~llp~LL~klkdkK~~V~~aa~ 426 (2052)
+...+ ..-..-+ ...+..|...+...+..+...|+.+++.++.+ +....+ ...-+|.|...++.+...++..+.
T Consensus 274 i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al 351 (810)
T 3now_A 274 LLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGVDILKRLYHSKNDGIRVRAL 351 (810)
T ss_dssp HHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCcHHHHHHHcCCCHHHHHHHH
Confidence 76432 1111111 14567777888877888899999999998775 222222 222348888888888888988777
Q ss_pred HHHHHHHHhc--C--------CCHHHHHHHHHHHhhcC--ChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhc
Q 000146 427 QTLQAMHKAG--C--------LNLVDVVEDVKTSVKNK--VPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN 494 (2052)
Q Consensus 427 ~aL~ai~~~~--~--------~~l~~ll~~l~~~L~~K--np~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~ 494 (2052)
.+|..+...+ . .++..+++.+...|.+. .+.+|..++..|..+-.......-...-..++|.|+.++.
T Consensus 352 ~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~ 431 (810)
T 3now_A 352 VGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR 431 (810)
T ss_dssp HHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhC
Confidence 7777775321 0 11456777788888776 7899999999888754322111111111458899999998
Q ss_pred CCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhh
Q 000146 495 DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVR 574 (2052)
Q Consensus 495 Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 574 (2052)
..++.+...|..+|+.+.. |.+. . ..+. .+.++.
T Consensus 432 s~d~~i~~~al~~L~NLt~--~~d~-q---~~~~-----~l~~la----------------------------------- 465 (810)
T 3now_A 432 GGNQSCLYGVVTTFVNLCN--AYEK-Q---EMLP-----EMIELA----------------------------------- 465 (810)
T ss_dssp TTCGGGHHHHHHHHHHHTT--CSCC-C---CCCC-----SCGGGT-----------------------------------
T ss_pred CCChHHHHHHHHHHHHHcC--Cchh-h---hhhH-----HHHHHH-----------------------------------
Confidence 8888888877777766654 3211 0 0000 000000
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH-HHHHHHhhccCcHHHHHhhhcCC
Q 000146 575 KSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQLKSAV 653 (2052)
Q Consensus 575 ~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~-ee~e~~~~~ll~~~l~~~L~s~~ 653 (2052)
+. ++. +. .+ +..... +...
T Consensus 466 ~~-----s~~-~v-----------------------------~~------~~~ld~~~~v~------------------- 485 (810)
T 3now_A 466 KF-----AKQ-HI-----------------------------PE------EHELDDVDFIN------------------- 485 (810)
T ss_dssp TT-----TCC-SC-----------------------------CC------SSCHHHHHHHH-------------------
T ss_pred HH-----hhc-cC-----------------------------cc------ccccccHHHHH-------------------
Confidence 00 000 00 00 000111 1111
Q ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHHh
Q 000146 654 WKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISER 731 (2052)
Q Consensus 654 Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveK 731 (2052)
.|.. .+++. .....|+..+. ..+..|+..+..+|..++.. ... +..+ .-++|.|+.-
T Consensus 486 --~r~~------~Vvea-----GaVp~LV~LL~------s~s~~vqe~Aa~aL~NLA~d-~~~-r~~Vv~~Gaip~Lv~L 544 (810)
T 3now_A 486 --KRIT------VLANE-----GITTALCALAK------TESHNSQELIARVLNAVCGL-KEL-RGKVVQEGGVKALLRM 544 (810)
T ss_dssp --HHHH------HHHHT-----THHHHHHHHHT------CCCHHHHHHHHHHHHHHHTS-HHH-HHHHHHTTHHHHHHHH
T ss_pred --HHHH------HHHHC-----cCHHHHHHHHc------CCCHHHHHHHHHHHHHHcCC-HHH-HHHHHHCCCHHHHHHH
Confidence 1111 01111 12233444432 12344555555555555432 111 1111 1245555554
Q ss_pred h--hchhhhHHHHHHHHHHHhhhChhHH---------HHHHHHHHhhCCCHHHHHHHHHHHHHHHHH---hCCCCCChHh
Q 000146 732 V--ADIKTRAHAMKCLTTFSEAVGPGFI---------FERLYKIMKDHKNPKVLSEGILWMVSAVED---FGVSHLKLKD 797 (2052)
Q Consensus 732 l--gd~K~r~~a~e~L~~l~E~~~~~~V---------l~~L~~~l~~~KnpKv~~e~L~~L~~~i~~---fG~~~l~~k~ 797 (2052)
+ ++.+.+..|..+|..++....++.+ ++.|+..+....+...+.+++..|..+... .....+. ..
T Consensus 545 L~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG 623 (810)
T 3now_A 545 ALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQ 623 (810)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TT
T ss_pred HccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cC
Confidence 4 3456788888888888765555433 334444432223444556777777766531 0000000 12
Q ss_pred HHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCC
Q 000146 798 LIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVS 877 (2052)
Q Consensus 798 li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~ 877 (2052)
.++.+..+ +.+.++.||.+|..+++.|.. ++.... . |.. +.
T Consensus 624 ~l~~Lv~L-L~s~~~~Vq~~A~~~L~NLa~--~~~~~~-----------~----~v~--~~------------------- 664 (810)
T 3now_A 624 GVSKIEYY-LMEDHLYLTRAAAQCLCNLVM--SEDVIK-----------M----FEG--NN------------------- 664 (810)
T ss_dssp HHHHHHHH-HHSCCTTHHHHHHHHHHHHTT--SHHHHH-----------H----HHS--SS-------------------
T ss_pred CHHHHHHH-HcCCCHHHHHHHHHHHHHHhC--ChHHHH-----------H----HHh--cc-------------------
Confidence 34556666 788899999999999998864 332211 1 110 00
Q ss_pred CCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCCh-hhHHHHHHhhhccchHHHHHHHHH
Q 000146 878 SGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGT-GELFGGLRGRLYDSNKNLVMATLI 956 (2052)
Q Consensus 878 ~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~-~eL~~aL~~rL~DsN~~V~~~Al~ 956 (2052)
+ ..+-|+..+.+.+-.+|++|.-.|..+.......++.-.- ...++.|...|.+.+..++..|+.
T Consensus 665 -------------g-~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~ 730 (810)
T 3now_A 665 -------------D-RVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIV 730 (810)
T ss_dssp -------------S-HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHH
T ss_pred -------------C-cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHH
Confidence 0 1235677788888999999999999888631111111000 346788888899999999999999
Q ss_pred HHHHHHHHhChhhHHhh--hHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHh
Q 000146 957 TLGAVASAMGPAVEKSS--KGVLSDILKCLGDN---KKHMRECTLTVLDAWLAA 1005 (2052)
Q Consensus 957 ~l~~la~alg~~~~~~~--~~llp~ll~~l~D~---k~~VR~aa~~aL~~i~~~ 1005 (2052)
++..++.+ +.....++ ...++++...+.++ +..+++.|.++|..+.+.
T Consensus 731 aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 731 IILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 99999873 33333332 23778888888655 788999999999998764
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=99.27 Aligned_cols=154 Identities=18% Similarity=0.161 Sum_probs=114.2
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+.|+..+.|.+|.+|..++..|..+-. .+.+..|...|.|.+..|+..|+..++.+.. .
T Consensus 53 ~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~ 111 (211)
T 3ltm_A 53 EPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------E 111 (211)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------G
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------H
Confidence 456777788889999999888876521 4567778888889999999999988887631 2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHH
Q 000146 975 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1054 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1054 (2052)
..++.++..+.|..+.||..+..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....+.
T Consensus 112 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~~~ 177 (211)
T 3ltm_A 112 RAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDE--DGWVRQSAADALGEI-G-------GERVRA 177 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-C-------SHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh-C-------chhHHH
Confidence 4567888888999999999988888776 4456778888888765 588898888888764 1 144556
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1055 PASIAMTDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1055 pl~~~L~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
.+...+.|.++.||.+|..+|..+....+
T Consensus 178 ~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 178 AMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 67777888999999999988876654433
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00034 Score=93.96 Aligned_cols=607 Identities=15% Similarity=0.126 Sum_probs=359.1
Q ss_pred ccCChHHHHHHHHHHHHHhc----CCCCCCCChHHHHHHHHHHhcC-cCHHHHHHHHHHHHHHHHHhhhcchhh-hhhHH
Q 000146 334 KATKWSERKDAVAELTKLAS----TKRIAPGDFTEVCRTLKKLITD-VNIAVAVEAIQAIGNLARGLRTHFSGS-SRFLL 407 (2052)
Q Consensus 334 ~s~kWkeR~eaL~~L~~L~~----~~ki~~~dy~~l~~~L~k~l~D-~N~~V~~~A~~~l~~La~~L~~~f~~~-~~~ll 407 (2052)
.+.+=..|..|+..|.-|+. ..+|... +-+..|.+.+++ .|.-++..|++++..||++=+..-... ...=.
T Consensus 18 ~~~~~~~~~~a~~nl~vl~re~aga~~i~~~---~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r~~~~~~~~~~ 94 (810)
T 3now_A 18 LATPIDKRRAAANNLVVLAKEQTGAELLYKD---HCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGV 94 (810)
T ss_dssp SCCSSHHHHHHHHHHHHHSSCHHHHHHHHHT---THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCH
T ss_pred cccCHHHHHHHHhhceeeeccccchHHHHhC---chHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHHHHHHHHHcCH
Confidence 34555667778888776652 1222211 224566667774 889999999999999998764332222 22335
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHh--cCC-----------------CHHHHHHHHHHHhhcCC--hHHHHHHHHHH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKA--GCL-----------------NLVDVVEDVKTSVKNKV--PLVRSLTLNWV 466 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~--~~~-----------------~l~~ll~~l~~~L~~Kn--p~vR~~~l~~L 466 (2052)
|.++..+.-+...+..++..++.+++.. +.. .++.++..+...+.+++ ...|-.+++.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~ 174 (810)
T 3now_A 95 PWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGAARDGVIELI 174 (810)
T ss_dssp HHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccChhhHHHHHHHH
Confidence 6677777777778888888888888875 110 14555666667777664 79999999999
Q ss_pred HHHHHhcChh---HHH--HhhhhHHHHHHHhhcCC--------ChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHH
Q 000146 467 TFCIETSSKA---AVL--KVHKDYVPICMECLNDG--------TPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRN 533 (2052)
Q Consensus 467 ~~~l~~~~~~---~l~--~~l~~l~p~l~k~l~Ds--------~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~k 533 (2052)
.+.+.+.... .+. ..++.++..... +.+. .+++|..+.-|+..++.-.+.+.-. +.-++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~-~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~-------~~~~~ 246 (810)
T 3now_A 175 TRNVHYTALEWAERLVEIRGLCRLLDVCSE-LEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAK-------ARFTD 246 (810)
T ss_dssp HHHTTCTTTTHHHHHHHTTHHHHHHHHHTC-CSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHH-------HHHHH
T ss_pred HHhCCccccccccchhhHhhHHHHHHHHhc-CccccccccCCCChhHHHHHHHHHHHHHHHhccchhH-------HHHHH
Confidence 8887543211 111 233444442222 2232 6789999999999999888842211 11122
Q ss_pred HHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhh-hhccc-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 000146 534 KLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRK-SAASM-LSGKRPVSAAPASKKGGPVKPSAKKDGSGKQ 611 (2052)
Q Consensus 534 kI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-~~~s~-~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~ 611 (2052)
.+.+|+...-.. . .. . ..++. ++-+. +++
T Consensus 247 ~~~~~~~~~~~~---~--------------~~---~-~~~~a~~alt~i~~g---------------------------- 277 (810)
T 3now_A 247 QIDEYIKDKLLA---P--------------DM---E-SKVRVTVAITALLNG---------------------------- 277 (810)
T ss_dssp HHHHHHHHHHSS---C--------------CH---H-HHHHHHHHHHHHHSS----------------------------
T ss_pred HHHHHHHHHhcc---C--------------Ch---H-hHHHHHHHHHHHhcC----------------------------
Confidence 333333210000 0 00 0 00000 00000 000
Q ss_pred cCCcCCCCCCCCCCCCCCHHHHHHHh-hccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc----hHHHHHHHHHh
Q 000146 612 ETSKLTEAPEDVEPSEMSLEEIESRL-GSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVC 686 (2052)
Q Consensus 612 ~~s~~~~~~~~~~~~~~s~ee~e~~~-~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~----~~~~~Lv~~L~ 686 (2052)
..+...... .+-+-+.++..+.|.+-..+..|++.+.........-+ ...+.|+.+
T Consensus 278 -----------------~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~L-- 338 (810)
T 3now_A 278 -----------------PLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRL-- 338 (810)
T ss_dssp -----------------SHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHH--
T ss_pred -----------------CHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHH--
Confidence 001111111 11112677889999999999999999887543311100 011233333
Q ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHc------CCCchhhHHHHHHHHHHhhhch----hhhHHHHHHHHHHHhhhCh--
Q 000146 687 MLPGWSEKNVQVQQQVIEVINYLAATA------TKFPKKCVVLCLLGISERVADI----KTRAHAMKCLTTFSEAVGP-- 754 (2052)
Q Consensus 687 ~~pg~~DsN~qV~~~~Le~l~~l~~~~------~~~~~~~~~~il~~LveKlgd~----K~r~~a~e~L~~l~E~~~~-- 754 (2052)
++..+..+...++-.|..+.... ..|....+..+++.++.-+.++ ..+..|.++|..++.....
T Consensus 339 ----l~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~ 414 (810)
T 3now_A 339 ----YHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKE 414 (810)
T ss_dssp ----TTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHH
T ss_pred ----HcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 33444556667777777776321 1233344566677777666554 4788888888887653211
Q ss_pred -----hHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCC---------------CCC----------hH--------
Q 000146 755 -----GFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS---------------HLK----------LK-------- 796 (2052)
Q Consensus 755 -----~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~---------------~l~----------~k-------- 796 (2052)
.-+++.|+..+ ++.++.++.+++..|..+...+-.. .++ ++
T Consensus 415 ~lv~d~g~Ip~LV~LL-~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vve 493 (810)
T 3now_A 415 KLIEDKASIHALMDLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLAN 493 (810)
T ss_dssp HHHHCHHHHHHHHHHH-HTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHh-CCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHH
Confidence 12456666665 5678899999999999988633100 000 11
Q ss_pred -hHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCC
Q 000146 797 -DLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 875 (2052)
Q Consensus 797 -~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~ 875 (2052)
..++.+..+ +.+.++.||..|..++..|.. .+..+..+ -+ . +
T Consensus 494 aGaVp~LV~L-L~s~s~~vqe~Aa~aL~NLA~--d~~~r~~V-----------v~----~---G---------------- 536 (810)
T 3now_A 494 EGITTALCAL-AKTESHNSQELIARVLNAVCG--LKELRGKV-----------VQ----E---G---------------- 536 (810)
T ss_dssp TTHHHHHHHH-HTCCCHHHHHHHHHHHHHHHT--SHHHHHHH-----------HH----T---T----------------
T ss_pred CcCHHHHHHH-HcCCCHHHHHHHHHHHHHHcC--CHHHHHHH-----------HH----C---C----------------
Confidence 244555666 788888999988888877752 11111111 11 0 0
Q ss_pred CCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccC-CCC-ChhhHHHHHHhhhc-cchHHHHH
Q 000146 876 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRI-QPA-GTGELFGGLRGRLY-DSNKNLVM 952 (2052)
Q Consensus 876 ~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I-~~~-~~~eL~~aL~~rL~-DsN~~V~~ 952 (2052)
..+.|+..+.+.....|..|...|..++...++.+ .+. ...+.++.|...|. |.+.....
T Consensus 537 -----------------aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~ 599 (810)
T 3now_A 537 -----------------GVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF 599 (810)
T ss_dssp -----------------HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHH
T ss_pred -----------------CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHH
Confidence 11345566666677789999999999987544322 111 11346778888885 33444556
Q ss_pred HHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCcc
Q 000146 953 ATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKL 1024 (2052)
Q Consensus 953 ~Al~~l~~la~alg~~~~~~~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~k~ 1024 (2052)
.|+.+|..|+..-...-...+ ...+|.++..+.+.+..|+.+|..+|..++..-. -...++.+...+.+.
T Consensus 600 eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-- 677 (810)
T 3now_A 600 ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-- 677 (810)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS--
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC--
Confidence 788888888854211111222 2478999999999999999999999998874311 123567777777765
Q ss_pred ChhHHHHHHHHHHHHhccCCCC-Cc-h--hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000146 1025 GAEGRKDLFDWLSKQLTGLSGF-PD-A--AHLLKPASIAMTDKSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1025 np~~R~~~l~~L~~~l~~~~~~-~~-~--~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~ 1080 (2052)
+..+|.+++..|...-...... .. + ...+++|+..|.+.+.+||+.|..++.-+..
T Consensus 678 d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 678 DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 4778888886666543322210 11 1 3477789999999999999999999987765
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-06 Score=97.21 Aligned_cols=149 Identities=19% Similarity=0.182 Sum_probs=106.4
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+.++..+.|.+|.+|..++..|..+-. .+.+..|...|.|.+..|+..|+..++.+.. .
T Consensus 48 ~~L~~~l~~~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~ 106 (201)
T 3ltj_A 48 EPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------E 106 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------G
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------H
Confidence 356667777888888888887766421 3456777777888888888888888776531 2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHH
Q 000146 975 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1054 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1054 (2052)
..++.++..+.|..+.||.++..+|..+ +-...++.+...+.++ ++.+|..++..|... .....+.
T Consensus 107 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~--------~~~~~~~ 172 (201)
T 3ltj_A 107 RAVEPLIKALKDEDWFVRIAAAFALGEI----GDERAVEPLIKALKDE--DGWVRQSAADALGEI--------GGERVRA 172 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH----TCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH--------CSHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh----CCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh--------CchhHHH
Confidence 3567777788888888888888887765 3356677777777765 577888888877754 1234555
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1055 PASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1055 pl~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
.+...+.|.++.||.+|..+|..+
T Consensus 173 ~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 173 AMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 677777888888888888877654
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00011 Score=95.36 Aligned_cols=480 Identities=13% Similarity=0.068 Sum_probs=271.0
Q ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCC--
Q 000146 365 VCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLN-- 439 (2052)
Q Consensus 365 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~-- 439 (2052)
.++.|.+.+.+.+..++..|+.++..++..-... ... ....++.|+..+... .+.++..+..+|..+... ...
T Consensus 18 ~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~ 95 (529)
T 1jdh_A 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLL 95 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH-HHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHH
Confidence 5667777788889999999999999998643321 111 235789999988754 788898888888887532 000
Q ss_pred ---HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 440 ---LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 440 ---l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
-...++.+...+++.++.++..++..|..+....+...-.-.-...+|.+++++.+.+..+|..+..++..+.. +
T Consensus 96 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~--~ 173 (529)
T 1jdh_A 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY--G 173 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--T
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh--C
Confidence 02357778888999999999999999999876543221100114588999999999999999999999986653 3
Q ss_pred ChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCC
Q 000146 517 MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 596 (2052)
Q Consensus 517 e~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~ 596 (2052)
+......+-.-+. -..+.+.+...
T Consensus 174 ~~~~~~~i~~~~~--i~~L~~ll~~~------------------------------------------------------ 197 (529)
T 1jdh_A 174 NQESKLIILASGG--PQALVNIMRTY------------------------------------------------------ 197 (529)
T ss_dssp CHHHHHHHHHTTH--HHHHHHHHHHC------------------------------------------------------
T ss_pred CHHHHHHHHHCCC--HHHHHHHHHhC------------------------------------------------------
Confidence 2221111111000 01111111100
Q ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhh-cCCHHHHHHHHHHHHHHHHhccccc
Q 000146 597 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK-SAVWKERLEAISSLRQQVEAVQNLD 675 (2052)
Q Consensus 597 ~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~-s~~Wk~Rl~ale~L~~~v~~~~~~~ 675 (2052)
+.++....+. .++..|. +..-+.. ++..
T Consensus 198 --------------------------------~~~~~~~~a~-----~~L~~l~~~~~~~~~---------~~~~----- 226 (529)
T 1jdh_A 198 --------------------------------TYEKLLWTTS-----RVLKVLSVCSSNKPA---------IVEA----- 226 (529)
T ss_dssp --------------------------------CCHHHHHHHH-----HHHHHHTTSTTHHHH---------HHHT-----
T ss_pred --------------------------------ChHHHHHHHH-----HHHHHHhcCcccHHH---------HHHC-----
Confidence 0000000000 0111111 1111100 0000
Q ss_pred hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhC
Q 000146 676 QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG 753 (2052)
Q Consensus 676 ~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~ 753 (2052)
...+.|+.+ +.+.+..+...++.++..+....+... ....++|.|+.-+.+ ..++..+..+|..++....
T Consensus 227 g~~~~L~~l------l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~ 298 (529)
T 1jdh_A 227 GGMQALGLH------LTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 298 (529)
T ss_dssp THHHHHHTT------TTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCH
T ss_pred CCHHHHHHH------HhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 112223332 345567788888888887776533221 234567888876654 5678888888887765321
Q ss_pred --h-----hHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHhCCC-----CCChHhHHHHHHhhCCCCCc-HHHHHHHH
Q 000146 754 --P-----GFIFERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGVS-----HLKLKDLIDFCKDTGLQSSA-AATRNATI 819 (2052)
Q Consensus 754 --~-----~~Vl~~L~~~l~~-~KnpKv~~e~L~~L~~~i~~fG~~-----~l~~k~li~~l~~~gL~~~n-~~VR~aA~ 819 (2052)
- .-+++.++..+.. ..++.++..++..|..+....+.. .+--...++.+..+ +.+.+ +.||..|.
T Consensus 299 ~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~l-L~~~~~~~v~~~a~ 377 (529)
T 1jdh_A 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL-LHPPSHWPLIKATV 377 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT-TSTTCCHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHH-hccccchHHHHHHH
Confidence 0 1245666666543 345889999998888764311110 00001234556666 77776 69999999
Q ss_pred HHHHHHHHhhChhhHhhh--hhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHH
Q 000146 820 KLLGALHKFVGPDIKGFL--ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTL 897 (2052)
Q Consensus 820 ~ll~~Ly~~~G~~l~~~L--~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~l 897 (2052)
.+++.+-. ++.-...+ .++-|.+.+.+.....+++.+..- ... +. . +....
T Consensus 378 ~~l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~----~l~-n~----------~------~~~~~---- 430 (529)
T 1jdh_A 378 GLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSM----GGT-QQ----------Q------FVEGV---- 430 (529)
T ss_dssp HHHHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC--------------------------------CBTTB----
T ss_pred HHHHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhc----ccC-ch----------h------hhccc----
Confidence 99888864 33322322 355677777776654443221100 000 00 0 00000
Q ss_pred HhhcCCCChHHHHHHHHHHHHHHHhcc--ccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--
Q 000146 898 VKSLESPDWKVRLESIEAVNKILEEAN--KRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS-- 973 (2052)
Q Consensus 898 l~~l~d~~Wk~R~eale~L~~ll~~a~--~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~-- 973 (2052)
..-..+..++..+..++.... ..+.. ...++.|...+.|.+..|+..|+.++..++.. +.....+
T Consensus 431 ------~~~~i~~~~~~al~~L~~~~~~~~~l~~---~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~--~~~~~~i~~ 499 (529)
T 1jdh_A 431 ------RMEEIVEGCTGALHILARDVHNRIVIRG---LNTIPLFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEA 499 (529)
T ss_dssp ------CHHHHHHHHHHHHHHHTTSHHHHHHHHH---TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--HHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHHHhcCchHHHHHhc---cCCccHHHHHHcCCchHHHHHHHHHHHHHhcC--HHHHHHHHH
Confidence 011223344555554432100 00110 23567888889999999999999988887631 2222222
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000146 974 KGVLSDILKCLGDNKKHMRECTLTVLDAW 1002 (2052)
Q Consensus 974 ~~llp~ll~~l~D~k~~VR~aa~~aL~~i 1002 (2052)
...++.+...+.+.++.|+..|..+|..+
T Consensus 500 ~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 500 EGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp TTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 13457788888888888988888887654
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.50 E-value=1.1e-05 Score=105.21 Aligned_cols=375 Identities=11% Similarity=0.114 Sum_probs=232.3
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccc--cc-----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LD-----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 715 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~--~~-----~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~ 715 (2052)
++++..+.|.+-..++.|+..+.+++..... .+ .....|+++|. .+.+..++..+..+|..++.....
T Consensus 79 ~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~-----~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 79 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHc-----CCCCHHHHHHHHHHHHHHHcCCHH
Confidence 6788999999999999999999988754221 11 11344566653 345677888888888887753211
Q ss_pred CchhhH-HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhC--hhH-----HHHHHHHHHhhCC----CHHHHHHHHHHH
Q 000146 716 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PGF-----IFERLYKIMKDHK----NPKVLSEGILWM 781 (2052)
Q Consensus 716 ~~~~~~-~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~--~~~-----Vl~~L~~~l~~~K----npKv~~e~L~~L 781 (2052)
.....+ .-++|.|+.-+.+ ..++..|..+|..++.... -+. ++..++..+.... ...+...+...+
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 233 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 233 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHH
Confidence 111111 1367888876655 4688999889988875321 111 2334444442221 122233333333
Q ss_pred HHHHHHhCCC-C-CChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000146 782 VSAVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 859 (2052)
Q Consensus 782 ~~~i~~fG~~-~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~ 859 (2052)
+.+...-... . ..+..+++.+..+ +.+.++.|+..|..++..|...... ....+. .
T Consensus 234 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~a~~aL~~l~~~~~~------------~~~~v~----~----- 291 (529)
T 3tpo_A 234 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNE------------RIEMVV----K----- 291 (529)
T ss_dssp HHHHCCCTTCCCHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHH------------HHHHHH----T-----
T ss_pred HHHHhcccchhhHHHHhhHHHHHHHH-hcCCcHHHHHHHHHHHHHhhhhhhh------------hHHHHH----h-----
Confidence 3333211111 1 1245678888888 9999999999998887766532110 000000 0
Q ss_pred CCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCC-ChhhHHHH
Q 000146 860 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-GTGELFGG 938 (2052)
Q Consensus 860 ~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~-~~~eL~~a 938 (2052)
..+.+.|+..+.+.++.++..++..|..++... ...... .-...+..
T Consensus 292 -------------------------------~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~i~~~g~l~~ 339 (529)
T 3tpo_A 292 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 339 (529)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------ccchHHHHHHhcCCChhHHHHHHHHHHHHHccc-hHHHHHHhhcccHHH
Confidence 002345777788899999999999999887421 110000 01234567
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 1009 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~-~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~-------- 1009 (2052)
|...|.+.+..++..|+.+|+.|+..-....... -..++|.++..+.+....++..|..+|..+......+
T Consensus 340 L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~ 419 (529)
T 3tpo_A 340 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHC 419 (529)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHC
Confidence 7788889999999999999999985432222222 2348999999999999999999999999888765432
Q ss_pred hhHHHHHHHHhcCccChhHHHHHHHHHHHHhccC---CCCCchhhhH------HHHHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1010 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL---SGFPDAAHLL------KPASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1010 ~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~---~~~~~~~~ll------~pl~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
.+++.|...|.++ ++.++..++..|...+... .....+..++ ..|-....+.|.+|++.|...+..+
T Consensus 420 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 495 (529)
T 3tpo_A 420 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 495 (529)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2466778888765 6888888888877665422 1111112221 2233345788999999988777554
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00019 Score=92.93 Aligned_cols=386 Identities=12% Similarity=0.054 Sum_probs=216.9
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHhcChh
Q 000146 403 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC-----LNLVDVVEDVKTSVKNK-VPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~-----~~l~~ll~~l~~~L~~K-np~vR~~~l~~L~~~l~~~~~~ 476 (2052)
....+|.|+..+++..+.|++.+..+|..+..... ......++.+...|.+. ++.++..++..|..+... +.
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~- 92 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-RE- 92 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HH-
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-ch-
Confidence 45578999999999999999999999998875310 01135677788888754 899999999999885432 11
Q ss_pred HHHHh-hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCccc
Q 000146 477 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARV 555 (2052)
Q Consensus 477 ~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~ 555 (2052)
..... -...+|.++.++.+.++.||..|..+|+.+...-.+. +..+.+. +
T Consensus 93 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~~--g-------------- 143 (529)
T 1jdh_A 93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-------------KMAVRLA--G-------------- 143 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH-------------HHHHHHH--T--------------
T ss_pred hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch-------------HHHHHHc--C--------------
Confidence 11111 1358899999999999999999999998887653321 1111110 0
Q ss_pred CCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHH
Q 000146 556 QTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIES 635 (2052)
Q Consensus 556 ~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~ 635 (2052)
.
T Consensus 144 -----------------------------------------------------------------------------~-- 144 (529)
T 1jdh_A 144 -----------------------------------------------------------------------------G-- 144 (529)
T ss_dssp -----------------------------------------------------------------------------H--
T ss_pred -----------------------------------------------------------------------------C--
Confidence 0
Q ss_pred HhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHH
Q 000146 636 RLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL------DQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYL 709 (2052)
Q Consensus 636 ~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~------~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l 709 (2052)
-+.++..|.+.+|+.|..+...|..+.....+. ....+.|++++... ....+...+..++..+
T Consensus 145 ------i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~-----~~~~~~~~a~~~L~~l 213 (529)
T 1jdh_A 145 ------LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-----TYEKLLWTTSRVLKVL 213 (529)
T ss_dssp ------HHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC-----ChHHHHHHHHHHHHHH
Confidence 023445555666776666665555433210000 00122333333210 0111111222222111
Q ss_pred HHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhC
Q 000146 710 AATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 789 (2052)
Q Consensus 710 ~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG 789 (2052)
.. ++..+.. +.+ .-+++.++..+ .+.++.++..++..|..+.....
T Consensus 214 ~~----------------------~~~~~~~-------~~~----~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 214 SV----------------------CSSNKPA-------IVE----AGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp TT----------------------STTHHHH-------HHH----TTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCT
T ss_pred hc----------------------CcccHHH-------HHH----CCCHHHHHHHH-hCCChHHHHHHHHHHHHHhcCCh
Confidence 10 1111111 111 01344455554 55678888888777777765432
Q ss_pred CCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 000146 790 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 869 (2052)
Q Consensus 790 ~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~ 869 (2052)
. ......+++.+..+ +.+.++.||..|..++..|... ++.....+ .+ ..
T Consensus 260 ~-~~~~~~~i~~L~~l-l~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~-----------~~----~~------------- 308 (529)
T 1jdh_A 260 K-QEGMEGLLGTLVQL-LGSDDINVVTCAAGILSNLTCN-NYKNKMMV-----------CQ----VG------------- 308 (529)
T ss_dssp T-CSCCHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTT-CHHHHHHH-----------HH----TT-------------
T ss_pred h-hHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH-----------HH----cC-------------
Confidence 2 22346788888888 9999999999999998888542 11111111 00 00
Q ss_pred ccccCCCCCCCCCCCCcccccccccHHHHhhcC--CCChHHHHHHHHHHHHHHHhccccC---CCCC-hhhHHHHHHhhh
Q 000146 870 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLE--SPDWKVRLESIEAVNKILEEANKRI---QPAG-TGELFGGLRGRL 943 (2052)
Q Consensus 870 ~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~--d~~Wk~R~eale~L~~ll~~a~~~I---~~~~-~~eL~~aL~~rL 943 (2052)
..+.++..+. +.+|.+|..++..|..+.... +.. +... -...++.|...|
T Consensus 309 -----------------------~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~i~~~~~i~~L~~lL 364 (529)
T 1jdh_A 309 -----------------------GIEALVRTVLRAGDREDITEPAICALRHLTSRH-QEAEMAQNAVRLHYGLPVVVKLL 364 (529)
T ss_dssp -----------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS-TTHHHHHHHHHHTTCHHHHHHTT
T ss_pred -----------------------ChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHcCChhHHHHHh
Confidence 0123333333 235888888888888775321 100 0000 013467788888
Q ss_pred ccch-HHHHHHHHHHHHHHHHHhChhhHHh-h-hHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000146 944 YDSN-KNLVMATLITLGAVASAMGPAVEKS-S-KGVLSDILKCLGDNKKHMRECTLTVLD 1000 (2052)
Q Consensus 944 ~DsN-~~V~~~Al~~l~~la~alg~~~~~~-~-~~llp~ll~~l~D~k~~VR~aa~~aL~ 1000 (2052)
.+.+ ..++..++.+++.++. +...... . ..++|.+++.+.+....+|..+.-++.
T Consensus 365 ~~~~~~~v~~~a~~~l~nl~~--~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~ 422 (529)
T 1jdh_A 365 HPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT 422 (529)
T ss_dssp STTCCHHHHHHHHHHHHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred ccccchHHHHHHHHHHHHHhc--ChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccC
Confidence 8776 5899999999999885 3332222 2 357899999998888778776655544
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.47 E-value=8.2e-06 Score=105.98 Aligned_cols=375 Identities=10% Similarity=0.108 Sum_probs=230.9
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhcc--ccch-----HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQ--NLDQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 715 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~--~~~~-----~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~ 715 (2052)
+++++.+.|.+-..++.|...+.+++.... +.+. ....|+++|. .+.+..++..+.-+|..++.....
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~-----~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTT-----CTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHC-----CCCCHHHHHHHHHHHHHHhcCCHH
Confidence 678899999999999999999998875522 1111 1234555543 245677888888888887753211
Q ss_pred CchhhHH-HHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhCh--hH-----HHHHHHHHHhhC----CCHHHHHHHHHHH
Q 000146 716 FPKKCVV-LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--GF-----IFERLYKIMKDH----KNPKVLSEGILWM 781 (2052)
Q Consensus 716 ~~~~~~~-~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~--~~-----Vl~~L~~~l~~~----KnpKv~~e~L~~L 781 (2052)
.....+. -.+|.|+.-+.+ ..++..|..+|..++..... +. .+..++..+... ....++..++..+
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 1111121 267888887765 47899999999888753211 11 233444443211 1222333344444
Q ss_pred HHHHHHhCCC-C-CChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000146 782 VSAVEDFGVS-H-LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 859 (2052)
Q Consensus 782 ~~~i~~fG~~-~-l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~ 859 (2052)
+.+...-... . ..+..+++.+..+ +.+.++.|+..|..++..|..... ...+.+. .
T Consensus 215 ~nl~~~~~~~~~~~~~~~~lp~L~~L-L~~~~~~v~~~A~~aL~~L~~~~~------------~~~~~i~----~----- 272 (510)
T 3ul1_B 215 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPN------------ERIEMVV----K----- 272 (510)
T ss_dssp HHHHCCCSSCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSCH------------HHHHHHH----T-----
T ss_pred HHHhhcccchhHHHHHHhHHHHHHHH-HhcCCHHHHHHHHHHHHHHhhchh------------hhHHHHH----h-----
Confidence 4433211111 1 1245678888888 999999999999888876643211 0000000 0
Q ss_pred CCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHH
Q 000146 860 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 938 (2052)
Q Consensus 860 ~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~a 938 (2052)
..+.+.|...+.+.++.++..++..|..++... ....... -...+..
T Consensus 273 -------------------------------~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~-~~~~~~i~~~g~l~~ 320 (510)
T 3ul1_B 273 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 320 (510)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------cccchhhhhhhcCCChhhhhHHHHHHHHhhcCC-HHHHHHHhhccchHH
Confidence 002346777888899999999999998886421 1000000 0123455
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCch--------
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLD-------- 1009 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~-~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~-------- 1009 (2052)
|...|.+.+..++..|+.+|+.|+..-....... -..++|.++..+.+....+|..|..+|..+......+
T Consensus 321 L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~ 400 (510)
T 3ul1_B 321 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 400 (510)
T ss_dssp CC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHC
Confidence 6677888999999999999999875432222222 2358899999999999999999999999888765432
Q ss_pred hhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC---CCchhhhH------HHHHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1010 KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLL------KPASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1010 ~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~---~~~~~~ll------~pl~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
..++.|...|.++ ++.++..++..|...+..... ...+..++ ..|-....+.|.+|++.|...+..+
T Consensus 401 g~i~~L~~LL~~~--d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 401 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476 (510)
T ss_dssp TCHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 2466777888765 578888888887766643211 11112222 2233344778889998887776544
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.47 E-value=0.028 Score=79.40 Aligned_cols=318 Identities=10% Similarity=0.095 Sum_probs=162.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcccc-c-hHHHHHHHHHhcCCCC---cccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHH
Q 000146 652 AVWKERLEAISSLRQQVEAVQNL-D-QSVEILVRLVCMLPGW---SEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLL 726 (2052)
Q Consensus 652 ~~Wk~Rl~ale~L~~~v~~~~~~-~-~~~~~Lv~~L~~~pg~---~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~ 726 (2052)
.+|+.|.+++-.+..+.+..... . .....++.+|...+.+ +|.+..|....+.++..+.+-+.. ....+..+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~-~~~~l~~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKA-HWNFLRTVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHH-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHH
Confidence 46888888777777554322111 1 1123344444322333 245555665677777655443211 1346778888
Q ss_pred HHHHhhhc--hhhhHHHHHHHHHHHhhhChhHH----------HHHHHHHH---hhCCCHHHHHHHHHHHHHHHHHhCC-
Q 000146 727 GISERVAD--IKTRAHAMKCLTTFSEAVGPGFI----------FERLYKIM---KDHKNPKVLSEGILWMVSAVEDFGV- 790 (2052)
Q Consensus 727 ~LveKlgd--~K~r~~a~e~L~~l~E~~~~~~V----------l~~L~~~l---~~~KnpKv~~e~L~~L~~~i~~fG~- 790 (2052)
.+++.+.| .+++..|..+|..+++.++...+ ++.++..+ ...-..+......+.+..++...|.
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~ 623 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCH
Confidence 88888877 57999999999999998775443 55555543 2333455556666777777765552
Q ss_pred CCC--ChHh----HHHHHHhhCCC-------C-CcHH-HHH--HHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHH---
Q 000146 791 SHL--KLKD----LIDFCKDTGLQ-------S-SAAA-TRN--ATIKLLGALHKFVGPDIKGFLADVKPALLSALDA--- 850 (2052)
Q Consensus 791 ~~l--~~k~----li~~l~~~gL~-------~-~n~~-VR~--aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~--- 850 (2052)
... -+.. ++..+... +. + .+++ ++. ....++..+...+|..+.+++..+-+..+..+..
T Consensus 624 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~~~~ 702 (1049)
T 3m1i_C 624 AERNRLLSDLMQLPNMAWDTI-VEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSS 702 (1049)
T ss_dssp HHHHHHHHHHTHHHHHHHHHH-HHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 0111 22212111 11 0 1222 232 2244566667788888777665443333322221
Q ss_pred ----HHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhcccc
Q 000146 851 ----EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 926 (2052)
Q Consensus 851 ----efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~ 926 (2052)
.+... +++. . .-|-+.....+.+.++..+. .|..+...++. ++.
T Consensus 703 ~~~~~~~~~---g~~~----~---------------~~p~~~~~~~~~~~l~~ll~--~~~~~~~~l~~---~~~----- 750 (1049)
T 3m1i_C 703 MISAQVAAE---GLIA----T---------------KTPKVRGLRTIKKEILKLVE--TYISKARNLDD---VVK----- 750 (1049)
T ss_dssp HHHHHHHHH---CGGG----G---------------GSHHHHHHHHHHHHHHHHHH--HHHHHCSCHHH---HHH-----
T ss_pred HHHHHHHcc---Cchh----h---------------hhHHHHHHHHHHHHHHHHHH--HHHHhCCCHHH---HHH-----
Confidence 11110 0000 0 00000000111111111110 11111111111 010
Q ss_pred CCCCChhhHHHHHHhhhcc--chHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh-----C--CCcHHHHHHHHH
Q 000146 927 IQPAGTGELFGGLRGRLYD--SNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-----G--DNKKHMRECTLT 997 (2052)
Q Consensus 927 I~~~~~~eL~~aL~~rL~D--sN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l-----~--D~k~~VR~aa~~ 997 (2052)
|. ..+++..+...+.. +.... ..++.+++.++..+|..+.+|+..++..++.+. + +..+.+|+....
T Consensus 751 --~~-~~~~l~~ll~~~~~~~~~~~~-~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~~~~~~pd~~~~~f~ 826 (1049)
T 3m1i_C 751 --VL-VEPLLNAVLEDYMNNVPDARD-AEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYK 826 (1049)
T ss_dssp --HT-HHHHHHHHHHHHHHSCGGGCC-THHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHH
T ss_pred --HH-HHHHHHHHHHHHHhCCccccc-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcchhhCHHHHHHHHH
Confidence 00 12233333222211 11111 468899999999999999999998888888774 3 567889999999
Q ss_pred HHHHHHHhcC
Q 000146 998 VLDAWLAAVH 1007 (2052)
Q Consensus 998 aL~~i~~~~~ 1007 (2052)
.+..++.++.
T Consensus 827 ll~~i~~~~~ 836 (1049)
T 3m1i_C 827 LLKVINEKSF 836 (1049)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHhCH
Confidence 9999998875
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.4e-06 Score=95.81 Aligned_cols=182 Identities=20% Similarity=0.176 Sum_probs=138.7
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh
Q 000146 894 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS 973 (2052)
Q Consensus 894 ~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~ 973 (2052)
.+.|+..+.+.+|.+|..++..|..+-. .+.+..|...|.|.+..|+..|+..|+.+..
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~---------- 79 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD---------- 79 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------
Confidence 4578888999999999999999976521 4577888889999999999999999987641
Q ss_pred hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhH
Q 000146 974 KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1053 (2052)
Q Consensus 974 ~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll 1053 (2052)
...++.++..|.|..+.||.++..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....+
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~~ 145 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DERAV 145 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-C-------CGGGH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHhCC--CHHHHHHHHHHHHHc-C-------CHHHH
Confidence 34678889999999999999999998865 4456788899999876 689999999998864 1 13466
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhcc
Q 000146 1054 KPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNG 1110 (2052)
Q Consensus 1054 ~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~ 1110 (2052)
..+...+.|.++.||.+|..+|..+...-..+.+...+.+=++..+......+.+.+
T Consensus 146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 146 EPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 778889999999999999999987732222233444444445555565566665543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.1e-06 Score=94.39 Aligned_cols=181 Identities=20% Similarity=0.169 Sum_probs=136.3
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
..+.+++.+.+.+|.+|..|+..|..+-. .+.+..|...|.|.+..|+..|+..++.+. .
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----~----- 74 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----D----- 74 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----C-----
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----C-----
Confidence 45678999999999999999999976521 356788888899999999999999988763 1
Q ss_pred hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhh
Q 000146 973 SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1052 (2052)
Q Consensus 973 ~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~l 1052 (2052)
...++.++..+.|..+.||..|..+|..+ +-...++.+...|.++ ++.+|..++..|... . ....
T Consensus 75 -~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~-~-------~~~~ 139 (201)
T 3ltj_A 75 -ERAVEPLIKALKDEDGWVRQSAAVALGQI----GDERAVEPLIKALKDE--DWFVRIAAAFALGEI-G-------DERA 139 (201)
T ss_dssp -GGGHHHHHHHTTCSSHHHHHHHHHHHHHH----CCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHH-T-------CGGG
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHh----CcHHHHHHHHHHHcCC--CHHHHHHHHHHHHHh-C-------CHHH
Confidence 24678889999999999999999998875 4456788889999876 689999999988864 1 1356
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhh
Q 000146 1053 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKL 1108 (2052)
Q Consensus 1053 l~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k 1108 (2052)
+..+...+.|.++.||..|..+|..+...-....+...+.+=++..+......+.+
T Consensus 140 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 140 VEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 67788899999999999999999877211111233333443344444444454443
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00011 Score=95.53 Aligned_cols=380 Identities=13% Similarity=0.125 Sum_probs=237.1
Q ss_pred chhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh
Q 000146 327 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS 402 (2052)
Q Consensus 327 ~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~d---y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~ 402 (2052)
++..+.+.|.+-..+.+|+..++++++..+-.+-+ =..+++.|...|+ +.+..+...|+.+|..||.+-...-...
T Consensus 60 ~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~v 139 (510)
T 3ul1_B 60 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 36778889999999999999999987532222200 1235778888887 6678899999999999997543322222
Q ss_pred hh-hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHhhcCC-----hHHHHHHHHHHHHHH
Q 000146 403 SR-FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKV-----PLVRSLTLNWVTFCI 470 (2052)
Q Consensus 403 ~~-~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~------ll~~l~~~L~~Kn-----p~vR~~~l~~L~~~l 470 (2052)
+. ..+|.|+..+++....|++.+..||..++.. +....+ .++.+...+...+ ..+...++..+..+.
T Consensus 140 v~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d-~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~ 218 (510)
T 3ul1_B 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGD-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC 218 (510)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence 22 4789999999999999999999999999864 222222 2455666665433 234444555555444
Q ss_pred HhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCC
Q 000146 471 ETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGT 550 (2052)
Q Consensus 471 ~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~ 550 (2052)
.......-......++|.|.+++.+.+++|+..|+.++..+.. +.. ... ......
T Consensus 219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~--~~~-----------~~~---~~i~~~--------- 273 (510)
T 3ul1_B 219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD--GPN-----------ERI---EMVVKK--------- 273 (510)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTS--SCH-----------HHH---HHHHTT---------
T ss_pred hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhh--chh-----------hhH---HHHHhc---------
Confidence 3222211123346789999999999999999998888865542 111 011 111000
Q ss_pred CCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH
Q 000146 551 SSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL 630 (2052)
Q Consensus 551 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ 630 (2052)
T Consensus 274 -------------------------------------------------------------------------------- 273 (510)
T 3ul1_B 274 -------------------------------------------------------------------------------- 273 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHH--HhcC-CCCcccHHHHHHHHHHHHH
Q 000146 631 EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRL--VCML-PGWSEKNVQVQQQVIEVIN 707 (2052)
Q Consensus 631 ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~--L~~~-pg~~DsN~qV~~~~Le~l~ 707 (2052)
-+-+.++..|.+.++..+..++..|..++...+ .....++.. +... .-+.+.+..|...++-+|.
T Consensus 274 ---------g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~---~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~ 341 (510)
T 3ul1_B 274 ---------GVVPQLVKLLGATELPIVTPALRAIGNIVTGTD---EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341 (510)
T ss_dssp ---------TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH---HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHH
T ss_pred ---------ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH---HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 001345667778888888888888876654321 112222221 1111 1245677788888888887
Q ss_pred HHHHHcCCCchhhH-HHHHHHHHHhhh--chhhhHHHHHHHHHHHhhhChhH--------HHHHHHHHHhhCCCHHHHHH
Q 000146 708 YLAATATKFPKKCV-VLCLLGISERVA--DIKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKVLSE 776 (2052)
Q Consensus 708 ~l~~~~~~~~~~~~-~~il~~LveKlg--d~K~r~~a~e~L~~l~E~~~~~~--------Vl~~L~~~l~~~KnpKv~~e 776 (2052)
.++........... ..++|.|+.-+. +.++|..|.-+|..++....++. +++.|+..+ ..++++++..
T Consensus 342 nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL-~~~d~~i~~~ 420 (510)
T 3ul1_B 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKIIQV 420 (510)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGG-GCSCHHHHHH
T ss_pred HHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh-cCCCHHHHHH
Confidence 76542111111111 236677777654 46788888888888877655443 245555554 7899999999
Q ss_pred HHHHHHHHHHHhCCCC-C-ChH------hHHHHHHhhCCCCCcHHHHHHHHHHHHHHH
Q 000146 777 GILWMVSAVEDFGVSH-L-KLK------DLIDFCKDTGLQSSAAATRNATIKLLGALH 826 (2052)
Q Consensus 777 ~L~~L~~~i~~fG~~~-l-~~k------~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 826 (2052)
++..|..+++...... . ... ..++.+..+ ..|.|..|++.|..++-..|
T Consensus 421 ~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 477 (510)
T 3ul1_B 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 477 (510)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 9999988875322110 0 111 134445555 67899999999988865544
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00097 Score=88.41 Aligned_cols=241 Identities=10% Similarity=0.055 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHH
Q 000146 772 KVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAE 851 (2052)
Q Consensus 772 Kv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~e 851 (2052)
-|.-+++..+..+ +...--.+..+..+..+ +.++++++|..|...+..+-...+. +. .
T Consensus 308 aVl~ea~~~i~~l----~~~~~~~~~~~~~L~~~-L~~~~~niry~aL~~l~~l~~~~~~----------~~-------~ 365 (621)
T 2vgl_A 308 AVLFEAISLIIHH----DSEPNLLVRACNQLGQF-LQHRETNLRYLALESMCTLASSEFS----------HE-------A 365 (621)
T ss_dssp HHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH-SSCSCHHHHHHHHHHHHHHTTCTTT----------HH-------H
T ss_pred HHHHHHHHHHHhc----CCcHHHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHHhccCc----------HH-------H
Confidence 5566666555443 22110123455666677 8888999999998887766432210 00 0
Q ss_pred HhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcC-CCChHHHHHHHHHHHHHHHhccccCCCC
Q 000146 852 YEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPA 930 (2052)
Q Consensus 852 feK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~-d~~Wk~R~eale~L~~ll~~a~~~I~~~ 930 (2052)
| ......++..+. |.+-.+|..+++.+..++.+.
T Consensus 366 ~--------------------------------------~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~------- 400 (621)
T 2vgl_A 366 V--------------------------------------KTHIETVINALKTERDVSVRQRAVDLLYAMCDRS------- 400 (621)
T ss_dssp H--------------------------------------HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-------
T ss_pred H--------------------------------------HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh-------
Confidence 0 011235666677 888889999999999887543
Q ss_pred ChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-c-
Q 000146 931 GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-L- 1008 (2052)
Q Consensus 931 ~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-l- 1008 (2052)
...+++..|...+.+.+..++..++..|+.+|....+.+..|+..++ +.+.+....+.+.+...+..++...+ +
T Consensus 401 Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll----~ll~~~~~~v~~ev~~~l~~ii~~~~~~~ 476 (621)
T 2vgl_A 401 NAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTIL----NLIRIAGDYVSEEVWYRVIQIVINRDDVQ 476 (621)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHH----HHHHHHGGGSCSHHHHHHHHHHGGGCSCH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH----HHHHhhcccchHHHHHHHHHHHhCChhHH
Confidence 25788888999998889999999999999999887777666655444 33333333455555556665555443 2
Q ss_pred hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhcc-CCCCCc--hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1009 DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG-LSGFPD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1009 ~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~-~~~~~~--~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
...+..+.+.+.+..... .=..+..|+.--+.. ....+. ..+.+..+...+.+.++.||..+-.++..+..+.++
T Consensus 477 ~~~~~~l~~~l~~~~~~~-~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~ 554 (621)
T 2vgl_A 477 GYAAKTVFEALQAPACHE-NLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE 554 (621)
T ss_dssp HHHHHHHHHHHTSSSCCH-HHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHcCccchH-HHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH
Confidence 223445667776542111 111223364322211 111111 234566677778888999999999999888776653
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00011 Score=95.81 Aligned_cols=376 Identities=13% Similarity=0.125 Sum_probs=232.8
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 402 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~d---y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~- 402 (2052)
++.+.+.+.+-..+.+|+..++++++..+-.+-+ -..+++.|.+.+. +.+..+...|+.+|..||.+-...-...
T Consensus 80 ~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv 159 (529)
T 3tpo_A 80 DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVV 159 (529)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5778888999999999999999987533222210 1246677888887 7789999999999999997543322212
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH------HHHHHHHHhhcCC-----hHHHHHHHHHHHHHHH
Q 000146 403 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD------VVEDVKTSVKNKV-----PLVRSLTLNWVTFCIE 471 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~------ll~~l~~~L~~Kn-----p~vR~~~l~~L~~~l~ 471 (2052)
-...+|.|+..+......|++.+..||..++.. +....+ .++.+...+.... ..+...++..|..+..
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~-~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~ 238 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGA-GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 238 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc-CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh
Confidence 234789999999999999999999999999864 212222 2445555565333 2334444444444433
Q ss_pred hcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCC
Q 000146 472 TSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTS 551 (2052)
Q Consensus 472 ~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~ 551 (2052)
......-......++|.|.+++.+.+++|+..|+.+|..+.. +... ....+ +..
T Consensus 239 ~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~--~~~~-----------~~~~v---~~~---------- 292 (529)
T 3tpo_A 239 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD--GPNE-----------RIEMV---VKK---------- 292 (529)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHH-----------HHHHH---HTT----------
T ss_pred cccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhh--hhhh-----------hHHHH---Hhc----------
Confidence 222211123346789999999999999999988877765542 1110 01111 000
Q ss_pred CcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHH
Q 000146 552 SARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLE 631 (2052)
Q Consensus 552 ~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~e 631 (2052)
T Consensus 293 -------------------------------------------------------------------------------- 292 (529)
T 3tpo_A 293 -------------------------------------------------------------------------------- 292 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc------hHHHHHHHHHhcCCCCcccHHHHHHHHHHH
Q 000146 632 EIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEV 705 (2052)
Q Consensus 632 e~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~------~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~ 705 (2052)
-+-+.++..|.+.++..+..++..|..++...+... .....|+.+ +.+.+..|...++-+
T Consensus 293 --------g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~L------L~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 293 --------GVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL------LTNPKTNIQKEATWT 358 (529)
T ss_dssp --------TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHH------TTCSSHHHHHHHHHH
T ss_pred --------cchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHH------HcCCCHHHHHHHHHH
Confidence 001235566777788888888887776653311100 011223333 345566788888888
Q ss_pred HHHHHHHcCCCchhhH-HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhChhH--------HHHHHHHHHhhCCCHHHH
Q 000146 706 INYLAATATKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGF--------IFERLYKIMKDHKNPKVL 774 (2052)
Q Consensus 706 l~~l~~~~~~~~~~~~-~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~~--------Vl~~L~~~l~~~KnpKv~ 774 (2052)
|..++........... ..++|.|+.-+.+ .+++..|.-+|..++....++. +++.|+..+ ..++++++
T Consensus 359 L~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL-~~~d~~i~ 437 (529)
T 3tpo_A 359 MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL-SAKDTKII 437 (529)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGG-GCSCHHHH
T ss_pred HHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHh-cCCCHHHH
Confidence 8776643111111111 2366777766544 5788888888888877555442 244555554 78999999
Q ss_pred HHHHHHHHHHHHHhCCCC-C-ChHh------HHHHHHhhCCCCCcHHHHHHHHHHHHHHH
Q 000146 775 SEGILWMVSAVEDFGVSH-L-KLKD------LIDFCKDTGLQSSAAATRNATIKLLGALH 826 (2052)
Q Consensus 775 ~e~L~~L~~~i~~fG~~~-l-~~k~------li~~l~~~gL~~~n~~VR~aA~~ll~~Ly 826 (2052)
..++..|..++....... . .... .++.+..+ ..|.|..|++.|..++-..|
T Consensus 438 ~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~L-q~~~n~~i~~~A~~iie~yf 496 (529)
T 3tpo_A 438 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAL-QRHENESVYKASLNLIEKYF 496 (529)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGG-GGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHH-HcCCCHHHHHHHHHHHHHHC
Confidence 999999988875321110 0 1111 23445555 67999999999988865543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.37 E-value=3.2e-05 Score=91.93 Aligned_cols=93 Identities=12% Similarity=0.052 Sum_probs=65.5
Q ss_pred HHHHHHhhhc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 000146 725 LLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC 802 (2052)
Q Consensus 725 l~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l 802 (2052)
++.|+..+.| ..+|..|..+|..+. ...+++.+...+ .+.++.+|..++..|.. +|...-.+..+++.+
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~----~~~~~~~L~~~l-~d~~~~vR~~A~~aL~~----l~~~~~~~~~l~~~L 95 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRG----GQDAVRLAIEFC-SDKNYIRRDIGAFILGQ----IKICKKCEDNVFNIL 95 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHC----CHHHHHHHHHHH-TCSSHHHHHHHHHHHHH----SCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccC----CchHHHHHHHHH-cCCCHHHHHHHHHHHHH----hccccccchHHHHHH
Confidence 4666776766 357777777776654 344677777765 78899999988877644 453222345666766
Q ss_pred Hh-hCCCCCcHHHHHHHHHHHHHHHH
Q 000146 803 KD-TGLQSSAAATRNATIKLLGALHK 827 (2052)
Q Consensus 803 ~~-~gL~~~n~~VR~aA~~ll~~Ly~ 827 (2052)
.. + +.+.++.||..|...++.+..
T Consensus 96 ~~~~-~~d~~~~vr~~a~~aL~~l~~ 120 (280)
T 1oyz_A 96 NNMA-LNDKSACVRATAIESTAQRCK 120 (280)
T ss_dssp HHHH-HHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-hcCCCHHHHHHHHHHHHHHhc
Confidence 53 4 788999999999999998864
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00027 Score=93.71 Aligned_cols=166 Identities=15% Similarity=0.085 Sum_probs=119.7
Q ss_pred ChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhc
Q 000146 337 KWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLK 415 (2052)
Q Consensus 337 kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klk 415 (2052)
+=.+|++++..|..+. .+.... .++..+.+.+...|..+...+--++..+++. -...+..++..+.+-+.
T Consensus 51 ~~~~k~~~l~Kli~l~~~G~d~s-----~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~----~~e~~~L~iN~l~kDl~ 121 (621)
T 2vgl_A 51 DGYSKKKYVCKLLFIFLLGHDID-----FGHMEAVNLLSSNRYTEKQIGYLFISVLVNS----NSELIRLINNAIKNDLA 121 (621)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCC-----SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCC----CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCc-----hhHHHHHHHhcCCCHHHHHHHHHHHHHHccC----CcHHHHHHHHHHHHhcC
Confidence 4457888888876643 333222 2344444577888887777666666655432 12346677888899999
Q ss_pred cCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHh--hcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhh
Q 000146 416 EKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSV--KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECL 493 (2052)
Q Consensus 416 dkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L--~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l 493 (2052)
++++.+|..|..+|..+... .-.+.+++.|...+ .|.+|.||..++..+.+++...+. .+ +. ..+++.+.++|
T Consensus 122 ~~n~~ir~lALr~L~~i~~~--e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~-~~-~~-~~~~~~l~~lL 196 (621)
T 2vgl_A 122 SRNPTFMGLALHCIANVGSR--EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD-LV-PM-GDWTSRVVHLL 196 (621)
T ss_dssp SCCHHHHHHHHHHHHHHCCH--HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG-GC-CC-CSCHHHHHHHT
T ss_pred CCCHHHHHHHHHHhhccCCH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh-hc-Cc-hhHHHHHHHHh
Confidence 99999998887777766321 22466778888899 899999999999999999986532 22 11 27889999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHhC
Q 000146 494 NDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 494 ~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
+|.++.|+.+|..++..+...-+
T Consensus 197 ~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 197 NDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCH
T ss_pred CCCCccHHHHHHHHHHHHHHhCh
Confidence 99999999999999988876543
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00094 Score=94.37 Aligned_cols=389 Identities=12% Similarity=0.044 Sum_probs=225.6
Q ss_pred HHHHhc-cCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh--hh----hhH
Q 000146 96 FKKTVA-DSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE--AV----DVF 168 (2052)
Q Consensus 96 ~~k~v~-DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~r~~tk~~A~~~~l~~~e~~--~~----~~v 168 (2052)
+.+++. ..|..+...+|+|+..|+.-..... -....++..++++.+ +.+.++..|++|+..++... .. +..
T Consensus 199 ~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~-~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~ 276 (1049)
T 3m1i_C 199 CFQVLEQGSSSSLIVATLESLLRYLHWIPYRY-IYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQ 276 (1049)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHH-HHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHH-HhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHH
Confidence 334443 3467788899999988876544211 011246666666654 37889999999999888652 11 111
Q ss_pred H----HHHHHHhhc-cC-----------------hhhHHHHHHHHHHHHHHhCCCC-----c--ChHHHHhhhhhhhCCC
Q 000146 169 L----DVMEKAIKN-KV-----------------AKAVVPAIDVMFQALSEFGAKI-----I--PPKRILKMLPELFDHQ 219 (2052)
Q Consensus 169 ~----e~Ll~~l~~-K~-----------------PKvv~~~l~~L~~~l~~FG~~~-----i--~~k~il~~l~~ll~~~ 219 (2052)
+ ..++..+.. -. ..........+..+++.+..-. . .+..+++.+..+..+.
T Consensus 277 ~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~ 356 (1049)
T 3m1i_C 277 TVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE 356 (1049)
T ss_dssp HHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCC
Confidence 1 111221111 11 1111122222222222211100 0 1334677777777888
Q ss_pred ChhHHHHHHHHHHHHHHhh--CCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCC
Q 000146 220 DQNVRASSKGLTLELCRWI--GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGP 297 (2052)
Q Consensus 220 dk~VR~~a~~l~vely~~l--G~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~ 297 (2052)
|..|+..+.++...+.+.+ .+. . ....++...+-+...+.++.- | + +.
T Consensus 357 d~~v~~~~lefw~~l~~~l~~~~~-~----~~~~~~~l~~Lv~~ll~~m~~---~--------e-------------d~- 406 (1049)
T 3m1i_C 357 ERELFKTTLDYWHNLVADLFYEPL-K----KHIYEEICSQLRLVIIENMVR---P--------E-------------EV- 406 (1049)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTT-C----GGGGHHHHHHHHHHHHHTCCC---C--------T-------------TC-
T ss_pred cHHHHHHHHHHHHHHHHHHHhchh-H----HHHHHHHHHHHHHHHHHhcCC---C--------c-------------ce-
Confidence 9999999999888777643 111 1 122334433334444444310 0 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHhc--
Q 000146 298 SEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLIT-- 374 (2052)
Q Consensus 298 ~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~-dy~~l~~~L~k~l~-- 374 (2052)
+-. +.|+.+ ++ . .|. ..+..|..|+.+-+.|..++.. ... -..-+...|...+.
T Consensus 407 --~~~-----~dd~~e-----~~-r-----~~~--~d~d~~~~~~~~~~~L~~l~~~---~~~~~l~~v~~~l~~~l~~~ 463 (1049)
T 3m1i_C 407 --LVV-----ENDEGE-----IV-R-----EFV--KESDTIQLYKSEREVLVYLTHL---NVIDTEEIMISKLARQIDGS 463 (1049)
T ss_dssp --CEE-----ECTTSC-----EE-E-----CSS--CCHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHTSS
T ss_pred --eee-----eCCCCc-----ch-H-----hhh--ccchHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHHHhCCC
Confidence 000 001100 00 0 111 1123477887777777666521 111 12334445555554
Q ss_pred CcCHHHHHHHHHHHHHHHHHhhhcch-hhhhhHHHHHHHHh-----ccCcHHHHHHHHHHHHHHHHh---cCCCHHHHHH
Q 000146 375 DVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKL-----KEKKPTVAESLTQTLQAMHKA---GCLNLVDVVE 445 (2052)
Q Consensus 375 D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~kl-----kdkK~~V~~aa~~aL~ai~~~---~~~~l~~ll~ 445 (2052)
..+-+.+..|+.+++.++.++....+ ++...+++.++... ++.++.|+..+..++..+... ....+..+++
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~ 543 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35677899999999999987765433 45777777776633 245666665565666544332 1123677888
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH-------HHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC-
Q 000146 446 DVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV-------LKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM- 517 (2052)
Q Consensus 446 ~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l-------~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge- 517 (2052)
.++.+|.+.++.|+..++..+.++.+.+..... .++++.++..+..++++-+.+-+....+|++.+....|.
T Consensus 544 ~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~ 623 (1049)
T 3m1i_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSV 623 (1049)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCH
Confidence 888899999999999999999999987764422 277889999999999988888888999999999999984
Q ss_pred hhHHHhHhhccHHHHHHHHHHH
Q 000146 518 RPLERSIEKLDDVRRNKLSEMI 539 (2052)
Q Consensus 518 ~~~~~~l~~Ld~~k~kkI~e~~ 539 (2052)
....+++..|-+.-..++...+
T Consensus 624 ~~~~~~~~~l~~~~~~~~~~~~ 645 (1049)
T 3m1i_C 624 AERNRLLSDLMQLPNMAWDTIV 645 (1049)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777776554444555443
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.9e-05 Score=91.14 Aligned_cols=149 Identities=15% Similarity=0.150 Sum_probs=116.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDI 980 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~l 980 (2052)
+.|.+|.+|..++..|..+.... +....++++.|...+.|.+..|+..|+..++.+.. ...+|.+
T Consensus 100 ~~d~~~~vr~~a~~aL~~l~~~~-----~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----------~~~~~~L 164 (280)
T 1oyz_A 100 LNDKSACVRATAIESTAQRCKKN-----PIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----------KATIPLL 164 (280)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHC-----GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhccC-----CcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----------HHHHHHH
Confidence 57899999999999999886421 11125788999999999999999999999987643 2368899
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhc
Q 000146 981 LKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM 1060 (2052)
Q Consensus 981 l~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L 1060 (2052)
+..+.|..+.||..+..+|..+. ......++.+...|.++ ++.+|..++..|...- ....+..+...+
T Consensus 165 ~~~l~d~~~~vr~~a~~aL~~~~--~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~--------~~~~~~~L~~~l 232 (280)
T 1oyz_A 165 INLLKDPNGDVRNWAAFAININK--YDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRK--------DKRVLSVLCDEL 232 (280)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHT--CCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTT--------CGGGHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhhc--cCcHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhC--------CHhhHHHHHHHh
Confidence 99999999999999999997762 22467788889999876 6899999998887531 245667788888
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 000146 1061 TDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1061 ~D~~~dVRkaA~~~L~~l 1078 (2052)
.|.+ ||..|..+|..+
T Consensus 233 ~d~~--vr~~a~~aL~~i 248 (280)
T 1oyz_A 233 KKNT--VYDDIIEAAGEL 248 (280)
T ss_dssp TSSS--CCHHHHHHHHHH
T ss_pred cCcc--HHHHHHHHHHhc
Confidence 8854 999998888765
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0089 Score=83.32 Aligned_cols=197 Identities=11% Similarity=0.058 Sum_probs=142.9
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcC--cCHHHHHHHHHHHHHHHHHhhhc-chhhhhhHHHHHHHHh
Q 000146 338 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITD--VNIAVAVEAIQAIGNLARGLRTH-FSGSSRFLLPVLLEKL 414 (2052)
Q Consensus 338 WkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D--~N~~V~~~A~~~l~~La~~L~~~-f~~~~~~llp~LL~kl 414 (2052)
|+.=++.|..+..+... .-..-++..|.+.+.+ .+=..+..+|-|+|.++.++... ..+++..++|.|+..+
T Consensus 430 f~~~Rd~L~~l~~l~~~-----~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~ 504 (1023)
T 4hat_C 430 YKSEREVLVYLTHLNVI-----DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLC 504 (1023)
T ss_dssp HHHHHHHHHHHHHHCHH-----HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHH-----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhh
Confidence 54434666666554321 1123344555555553 56788999999999999998765 5689999999999887
Q ss_pred c-----cCcHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH-------H
Q 000146 415 K-----EKKPTVAESLTQTLQAMHKA---GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV-------L 479 (2052)
Q Consensus 415 k-----dkK~~V~~aa~~aL~ai~~~---~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l-------~ 479 (2052)
. |.|..|++.+.-++..+... ....+..++..+..+|.+.+|.+...++..+..+.+.+..... .
T Consensus 505 ~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~ 584 (1023)
T 4hat_C 505 VKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESE 584 (1023)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSS
T ss_pred hccccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 5 56777777766666554433 1123678888888999888999999999999998887764322 3
Q ss_pred HhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChh-HHHhHhhccHHHHHHHHHHH
Q 000146 480 KVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMI 539 (2052)
Q Consensus 480 ~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~-~~~~l~~Ld~~k~kkI~e~~ 539 (2052)
+++..++..+..++++-.+.-+....++++.+....|... ...+++.|-+.-..++++.+
T Consensus 585 p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~ 645 (1023)
T 4hat_C 585 PFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIV 645 (1023)
T ss_dssp CHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHH
Confidence 5788888889999999999999999999999999999654 55677776555555555554
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.5e-05 Score=90.21 Aligned_cols=183 Identities=13% Similarity=0.115 Sum_probs=136.7
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCC-CCCCCC-hHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh-hhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTK-RIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 404 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~-ki~~~d-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 404 (2052)
-+...+.+.++..|.+|+..|..++... .....- -...++.|.+.+.+.+..|+..|+.+|+.|+.+-...-.. .-.
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 95 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 95 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC
Confidence 4667788999999999999999987421 100000 0146778888999889999999999999998533221111 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 405 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 405 ~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~-l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
..+|.|+..+.+..+.|+..+..+|..+... ... . ..+++.+...+++.++.+|..++..|..+....+.. .
T Consensus 96 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~ 173 (210)
T 4db6_A 96 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-K 173 (210)
T ss_dssp TCHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHH-H
T ss_pred CCHHHHHHHHcCCcHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHH-H
Confidence 5789999999999999999999999998753 111 1 235788888899999999999999999987643222 1
Q ss_pred HHh-hhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 479 LKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 479 ~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
... -...++.+..++.+.+++||..|..+|..+.
T Consensus 174 ~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 111 2358899999999999999999999998764
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.032 Score=77.60 Aligned_cols=297 Identities=8% Similarity=0.056 Sum_probs=173.5
Q ss_pred hhHHHHHHHHHHHhhhChhHHHH----HHHHHHh------hCCCHHHHHHHHHHHHHHHHHhCCCC-------CChHhHH
Q 000146 737 TRAHAMKCLTTFSEAVGPGFIFE----RLYKIMK------DHKNPKVLSEGILWMVSAVEDFGVSH-------LKLKDLI 799 (2052)
Q Consensus 737 ~r~~a~e~L~~l~E~~~~~~Vl~----~L~~~l~------~~KnpKv~~e~L~~L~~~i~~fG~~~-------l~~k~li 799 (2052)
.|.... .|...+...+++.++. .+...+. .+.+|+.+..+|..|..+-+.....+ -.+..++
T Consensus 414 ~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~ 492 (980)
T 3ibv_A 414 MRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLS 492 (980)
T ss_dssp HHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHH
T ss_pred HHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHH
Confidence 455555 7788888889888887 4433321 23568888888887776554222100 0123466
Q ss_pred HHHHhhCCC-----CCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccC
Q 000146 800 DFCKDTGLQ-----SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTS 874 (2052)
Q Consensus 800 ~~l~~~gL~-----~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~ 874 (2052)
+++..+ +. +.+|.||..+..+++..+.|+...- .++ |.
T Consensus 493 ~ll~~l-l~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-~~l----~~------------------------------- 535 (980)
T 3ibv_A 493 QILALV-TTSQVCRHPHPLVQLLYMEILVRYASFFDYES-AAI----PA------------------------------- 535 (980)
T ss_dssp HHHHHH-HHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-TTH----HH-------------------------------
T ss_pred HHHHHH-HhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-hhH----HH-------------------------------
Confidence 666554 43 7889999999999999998874210 000 00
Q ss_pred CCCCCCCCCCCcccccccccHHHHh--hcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc----ch-
Q 000146 875 SVSSGGSDGLPREDISGKFTPTLVK--SLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD----SN- 947 (2052)
Q Consensus 875 ~~~~~~~d~lpr~dIs~~i~~~ll~--~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D----sN- 947 (2052)
+...++. ++.+++-++|..|.-.+..+++.+.+.+.|. ..+++..|...|.- .+
T Consensus 536 ------------------~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~-~~~il~~l~~lL~~~~~~~~~ 596 (980)
T 3ibv_A 536 ------------------LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNY-TESSLAMLGDLLNISVSPVTD 596 (980)
T ss_dssp ------------------HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSS-HHHHHHHTTGGGCCCCCCCCC
T ss_pred ------------------HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhH-HHHHHHHHHHhhcCcCCCCCc
Confidence 1123344 4555666778888899999999877777765 47788888776641 00
Q ss_pred ----------------HHHHHHHHHHHHHHHHHhCh---hhHHhhhHHHHHHHHHhC----CC----cHH-HHHHHHHHH
Q 000146 948 ----------------KNLVMATLITLGAVASAMGP---AVEKSSKGVLSDILKCLG----DN----KKH-MRECTLTVL 999 (2052)
Q Consensus 948 ----------------~~V~~~Al~~l~~la~alg~---~~~~~~~~llp~ll~~l~----D~----k~~-VR~aa~~aL 999 (2052)
..=...-.+.+|.|+..++. .-..|+..+++++++.+. .. ... -......++
T Consensus 597 ~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al 676 (980)
T 3ibv_A 597 MDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAI 676 (980)
T ss_dssp --CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHH
T ss_pred ccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHH
Confidence 11234466788888888773 344688888888776553 11 111 112345556
Q ss_pred HHHHHhcC------------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhc-CC-CCH
Q 000146 1000 DAWLAAVH------------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAM-TD-KSS 1065 (2052)
Q Consensus 1000 ~~i~~~~~------------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L-~D-~~~ 1065 (2052)
+.+++-.. +..+++.+...|..=..+..+|..+..++.+.+...+. ++.+++++++..| .+ ...
T Consensus 677 ~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~--~~~p~lp~~i~~ll~~~~~~ 754 (980)
T 3ibv_A 677 GNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGP--DMLPKVPQLISILLNSIDMN 754 (980)
T ss_dssp HHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHH--HHTTTHHHHHHHHHHHCCTT
T ss_pred HHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH--hHHHHHHHHHHHHHhcCCHH
Confidence 66665431 11233344445542111477888888888887766543 2344444444332 22 122
Q ss_pred HHHHHHHHHHHHHHHHcChhHHHHHhccC
Q 000146 1066 DVRKAAEACIVEILRAGGQETIEKNLKDI 1094 (2052)
Q Consensus 1066 dVRkaA~~~L~~l~~~~G~e~~~~~l~~L 1094 (2052)
+... .-..++.++..+|.+ +.+.+..|
T Consensus 755 e~~~-fL~l~~qli~~f~~~-~~~~l~~l 781 (980)
T 3ibv_A 755 ELVD-VLSFISQLIHIYKDN-MMEITNRM 781 (980)
T ss_dssp THHH-HHHHHHHHHHHTTTT-SHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHH-HHHHHHHH
Confidence 2222 224666777777776 45454444
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0085 Score=83.36 Aligned_cols=618 Identities=11% Similarity=0.065 Sum_probs=318.7
Q ss_pred hHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhh-hhh---hHH
Q 000146 94 PLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELE-AVD---VFL 169 (2052)
Q Consensus 94 ~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~r~~tk~~A~~~~l~~~e~~-~~~---~v~ 169 (2052)
.++.++...+|..+..++|+|+..|+.-.....- ....+++.++ ++|+ .+.+|+.|.+|+..++... .++ .++
T Consensus 196 ~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i-~~~~ll~~l~-~~L~-~~~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 196 EMMLAYSNAKNYGTVGLCLQVYAQWVSWININLI-VNEPCMNLLY-SFLQ-IEELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHH-HCHHHHHHHH-HHTT-SHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhh-hcchHHHHHH-HHcC-ChHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 3444454457888999999999999986543211 1135666666 6565 5899999999999887652 222 223
Q ss_pred HHH--HHHh---h--ccChhhH-------HHHHHHHHHHHHHhCCCC----------cChHHHHhhhhhhhCCCChhHHH
Q 000146 170 DVM--EKAI---K--NKVAKAV-------VPAIDVMFQALSEFGAKI----------IPPKRILKMLPELFDHQDQNVRA 225 (2052)
Q Consensus 170 e~L--l~~l---~--~K~PKvv-------~~~l~~L~~~l~~FG~~~----------i~~k~il~~l~~ll~~~dk~VR~ 225 (2052)
..| ...+ . +..+... .++...+..+ . -.... -.+..+++.+..+++|.+..|=.
T Consensus 273 ~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~-~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~ 350 (980)
T 3ibv_A 273 NILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-K-SDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETST 350 (980)
T ss_dssp HHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-H-TSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHH
T ss_pred HHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-c-cCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHH
Confidence 222 1111 1 1223322 2222222222 1 11100 11456888889999999998888
Q ss_pred HHHHHHHHHHHhh---CC-chhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCC
Q 000146 226 SSKGLTLELCRWI---GK-DPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEES 301 (2052)
Q Consensus 226 ~a~~l~vely~~l---G~-~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~ 301 (2052)
.+..+...+...+ .. ..+ .+..+|...+-++..+.++.-+ .+ .+.+
T Consensus 351 ~t~~Fw~~~l~~~~~~~~~~~~----~~~~~~~l~~Ll~~li~k~~yp--------------------~d---~~~~--- 400 (980)
T 3ibv_A 351 AVFPFLSDLLVSLRKESSSKEL----SASLKEFLKSLLEAIIKKMKYD--------------------ES---QEWD--- 400 (980)
T ss_dssp TTHHHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHHHHTTSCC--------------------TT---CCCC---
T ss_pred HHHHHHHHHHHHHHhccccccc----cHHHHHHHHHHHHHHHHHccCC--------------------Cc---cccc---
Confidence 8877754433322 10 001 0112334344444444443210 00 0000
Q ss_pred CCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc---CcCH
Q 000146 302 TADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT---DVNI 378 (2052)
Q Consensus 302 ~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~---D~N~ 378 (2052)
+ +++.| | .++|.+ .+.+...+.....++........-|.-+...+...+. ..+=
T Consensus 401 --~-~~d~e--------d------~~~F~e------~Rk~l~~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W 457 (980)
T 3ibv_A 401 --D-DPDSE--------E------EAEFQE------MRKKLKIFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSW 457 (980)
T ss_dssp --C-CSSSS--------T------HHHHHH------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred --c-ccchh--------H------HHHHHH------HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 0 00000 0 024422 3333333333333222100000011133344444452 3456
Q ss_pred HHHHHHHHHHHHHHHHhhhc------chhhhhhHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHh---cCCCHHHHH
Q 000146 379 AVAVEAIQAIGNLARGLRTH------FSGSSRFLLPVLLEKLK-----EKKPTVAESLTQTLQAMHKA---GCLNLVDVV 444 (2052)
Q Consensus 379 ~V~~~A~~~l~~La~~L~~~------f~~~~~~llp~LL~klk-----dkK~~V~~aa~~aL~ai~~~---~~~~l~~ll 444 (2052)
+.+..|+-+++.++++++.. ..++...+++-|...+. +..+.|+-.+..++...... ....++.++
T Consensus 458 ~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L 537 (980)
T 3ibv_A 458 QLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALI 537 (980)
T ss_dssp HHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Confidence 67899999999999998742 22455566666665544 78899999888888776554 124478888
Q ss_pred HHHHH--HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCC----C-----------------hHHH
Q 000146 445 EDVKT--SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDG----T-----------------PEVR 501 (2052)
Q Consensus 445 ~~l~~--~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds----~-----------------~~VR 501 (2052)
+.++. ++.|.++.||..+...+.++.+.+.+. +.++++.|+..+..++.-. . .+-+
T Consensus 538 ~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~-L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~q 616 (980)
T 3ibv_A 538 EYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ-VVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQ 616 (980)
T ss_dssp HHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT-CSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHH
T ss_pred HHHhccccccCCChhHHHHHHHHHHHHHHHhhHH-hhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHH
Confidence 88888 888999999999999999999887653 5566677777776666511 1 1134
Q ss_pred HHHHHHHHHHHHHhCC--hhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhh--h
Q 000146 502 DAAFSVLAAIAKSVGM--RPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKS--A 577 (2052)
Q Consensus 502 ~aA~~~l~~l~~~~Ge--~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~--~ 577 (2052)
-.-++++|.+....+. +....++..|-+--..+++..+...... ... . ..+-.. .
T Consensus 617 l~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~-------------------~~~-~-~~i~~~i~a 675 (980)
T 3ibv_A 617 LYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSA-------------------LEN-I-ISVYCSLMA 675 (980)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC---------------------CH-H-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccC-------------------ccH-H-HHHHHHHHH
Confidence 4578888888888763 2234566666555556666666431100 000 0 000000 0
Q ss_pred ccccC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhh--cCCH
Q 000146 578 ASMLS-GKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLK--SAVW 654 (2052)
Q Consensus 578 ~s~~~-~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~--s~~W 654 (2052)
-+..+ |-+.. + . + ..+ ..+... .+. +.+...|. .++.
T Consensus 676 l~~lakgf~~~-------------~-----------~-~-------~~p---~~~~f~-~~~----~~il~~l~~~~~~~ 715 (980)
T 3ibv_A 676 IGNFAKGFPAR-------------G-----------S-E-------EVA---WLASFN-KAS----DEIFLILDRMGFNE 715 (980)
T ss_dssp HHHHHHTSCSC-------------C-------------C-------CCS---HHHHHH-HHH----HHHHHHHHHSCCSH
T ss_pred HHHHhccCCcc-------------c-----------C-C-------CCc---HHHHHH-HHH----HHHHHHHHhcCCcH
Confidence 00000 00000 0 0 0 001 112121 111 12223333 4678
Q ss_pred HHHHHHHHHHHHHHHhccc-cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhhh
Q 000146 655 KERLEAISSLRQQVEAVQN-LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVA 733 (2052)
Q Consensus 655 k~Rl~ale~L~~~v~~~~~-~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~LveKlg 733 (2052)
..|-++..-+..++...+. ..+...-++..+.. +-...-+...|.++..++..++.-....+..+++.++.++.
T Consensus 716 ~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~-----~~~~~e~~~fL~l~~qli~~f~~~~~~~l~~ll~~l~~~if 790 (980)
T 3ibv_A 716 DIRGAVRFTSGRIINVVGPDMLPKVPQLISILLN-----SIDMNELVDVLSFISQLIHIYKDNMMEITNRMLPTLLMRIF 790 (980)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHH-----HCCTTTHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877765322 11222333333321 11122355677777778877765445556677777777653
Q ss_pred ch-----------h----hhHHHHHHHHHHHhhh-C-----------hhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Q 000146 734 DI-----------K----TRAHAMKCLTTFSEAV-G-----------PGFIFERLYKIMKDHKNPKVLSEGILWMVSAVE 786 (2052)
Q Consensus 734 d~-----------K----~r~~a~e~L~~l~E~~-~-----------~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~ 786 (2052)
.. + ++..-...|..+..+. + .+.++..++.++.+..++-++.-|+..|.++++
T Consensus 791 ~~l~~~~~~td~~r~~~~l~r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~a~~~l~~~v~ 870 (980)
T 3ibv_A 791 SSLSAAPQGTDDAVKQNDLRKSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGEPATQKSSIALVSKMVS 870 (980)
T ss_dssp HHTTC----CCHHHHHHHHHHHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence 31 1 2222233444444421 1 224566666665566888899999999999999
Q ss_pred HhCCCC-CC------hHhHHHHHHhh----CCCCCcH---HHHHHHHHHHHHHHHhhChhhHhhh
Q 000146 787 DFGVSH-LK------LKDLIDFCKDT----GLQSSAA---ATRNATIKLLGALHKFVGPDIKGFL 837 (2052)
Q Consensus 787 ~fG~~~-l~------~k~li~~l~~~----gL~~~n~---~VR~aA~~ll~~Ly~~~G~~l~~~L 837 (2052)
.+|... ++ ++ +++.+-.. .+.-.|+ .|=.....++.++|...|+.+..||
T Consensus 871 ~~~~~~~~~gf~~f~~~-~~~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~~~l 934 (980)
T 3ibv_A 871 LWGGKDGIAGFENFTLS-LTPLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYKSYL 934 (980)
T ss_dssp C-------CCHHHHHHH-HHHHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCcchHHHHHHHH-HHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 997432 22 23 33332211 1222233 3566677788888988898877776
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=98.01 E-value=2e-05 Score=91.86 Aligned_cols=183 Identities=15% Similarity=0.156 Sum_probs=137.1
Q ss_pred chhhhhcccCChHHHHHHHHHHHHHhcC-CC-CCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh-h
Q 000146 327 SGFWEGVKATKWSERKDAVAELTKLAST-KR-IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS-S 403 (2052)
Q Consensus 327 ~~f~~~l~s~kWkeR~eaL~~L~~L~~~-~k-i~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~-~ 403 (2052)
+.|.+.+.+.+...|..|+..|..++.. .. ...---..+++.|.+.+.+.+..++..|+.+|+.++.+-...-... -
T Consensus 15 ~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 94 (252)
T 4db8_A 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 94 (252)
T ss_dssp HHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3688899999999999999999875532 00 0000012367788888998889999999999999986432221222 2
Q ss_pred hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000146 404 RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 404 ~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l-------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 476 (2052)
...+|.|+..+++..+.|+..+..+|..+... ... ..+++.|...+++.++.+|..++..|..+.... +.
T Consensus 95 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~ 171 (252)
T 4db8_A 95 AGALPALVQLLSSPNEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NE 171 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HH
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcC--CchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hH
Confidence 24899999999999999999999999988754 221 136788888999999999999999999876533 22
Q ss_pred HHHHh-hhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 477 AVLKV-HKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 477 ~l~~~-l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
..... -..++|.++.++.+.++.||..|..+|+.+.
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 22111 1458899999999999999999999998876
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00056 Score=73.00 Aligned_cols=198 Identities=20% Similarity=0.308 Sum_probs=146.6
Q ss_pred hhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHH
Q 000146 331 EGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPV 409 (2052)
Q Consensus 331 ~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~ 409 (2052)
.-+.+.-|..++.|+.-+..++.. .+.-|..++..|.-.+. +.-+..-.+-..++|.+|..= + ..++.++|.
T Consensus 39 ~~LDDDlwtV~kNAl~vi~~i~~~---~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-P---e~v~~vVp~ 111 (253)
T 2db0_A 39 ELLDDDLWTVVKNAISIIMVIAKT---REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-P---ELVKSMIPV 111 (253)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTT---CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-H---HHHHHHHHH
T ss_pred HHhccHHHHHHHhHHHHHHHHHHH---hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhC-H---HHHHhhHHH
Confidence 345778899999999999888753 23346677777777766 777777777778888887532 2 257889999
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHH
Q 000146 410 LLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPIC 489 (2052)
Q Consensus 410 LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l 489 (2052)
|+..+.--.+.++-...-+|..++..+...+..++.+|..-+.+||-.=|..+++|+..+=.++ .+|...++|-+
T Consensus 112 lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~-----~~yv~PfLprL 186 (253)
T 2db0_A 112 LFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS-----FKYVNPFLPRI 186 (253)
T ss_dssp HHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT-----HHHHGGGHHHH
T ss_pred HHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC-----ccccCcchHHH
Confidence 9999877777778888889999998733446788999999999999999999999988743332 24556778899
Q ss_pred HHhhcCCChHHHHHHHHHHHHHHHHhCC--hhHHHhHhhcc---HHHHHHHHHHHh
Q 000146 490 MECLNDGTPEVRDAAFSVLAAIAKSVGM--RPLERSIEKLD---DVRRNKLSEMIA 540 (2052)
Q Consensus 490 ~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge--~~~~~~l~~Ld---~~k~kkI~e~~~ 540 (2052)
..+|.|.+.-||..|.++++.+...-.. +.+..-+..++ +.-++++++.+.
T Consensus 187 ~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~ 242 (253)
T 2db0_A 187 INLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGIS 242 (253)
T ss_dssp HGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred HHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999999988754321 12233334443 345666766654
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0001 Score=85.29 Aligned_cols=189 Identities=17% Similarity=0.121 Sum_probs=140.0
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcC-CCCCCCC-hHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh-hhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 404 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~-~ki~~~d-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 404 (2052)
.+...+.+.+...|..++..|..++.. +.....- -...++.|...+.+.+..++..|+.+|+.|+..-...... .-.
T Consensus 48 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 127 (252)
T 4hxt_A 48 VLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 127 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 456667788899999999999998743 1110000 1135778888889999999999999999998532221111 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 405 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 405 ~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
..+|.|++.+++..+.++..+..+|..+... .... ..+++.+...+.+.++.+|..++..|..+.... +...
T Consensus 128 ~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 205 (252)
T 4hxt_A 128 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAI 205 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHH
Confidence 5799999999999999999999999998753 1111 236788888999999999999999999876532 2222
Q ss_pred HHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCCh
Q 000146 479 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMR 518 (2052)
Q Consensus 479 ~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~ 518 (2052)
.... ..+++.+..++.+.+++||..|..+++.+....+..
T Consensus 206 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 206 KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 1221 457899999999999999999999999998876643
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00011 Score=84.99 Aligned_cols=184 Identities=20% Similarity=0.159 Sum_probs=136.9
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCC-CCCC-ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh-hhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKR-IAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 404 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~k-i~~~-dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 404 (2052)
.+...+.+.++..|..|+..|..++.... .... --..+++.|.+.+.+.+..|+..|+.+|+.++..-...-.. .-.
T Consensus 6 ~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 85 (252)
T 4hxt_A 6 KLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA 85 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC
Confidence 46677888889999999999999875321 0000 00246788888999889999999999999998642211111 123
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 405 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 405 ~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
..+|.|+..+++..+.|+..+..+|..+... .... ..+++.|...+++.++.++..++..|..+....+ ...
T Consensus 86 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~ 163 (252)
T 4hxt_A 86 GGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD-EAI 163 (252)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH-HHH
Confidence 5799999999999999999999999999743 1111 1467888889999999999999999998765332 211
Q ss_pred HH-hhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000146 479 LK-VHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 479 ~~-~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
.. .-..++|.+..++.+.+++||..|..+++.+..
T Consensus 164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 199 (252)
T 4hxt_A 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS 199 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 11 124589999999999999999999999988874
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=97.84 E-value=6e-05 Score=85.21 Aligned_cols=183 Identities=16% Similarity=0.192 Sum_probs=133.3
Q ss_pred cHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh
Q 000146 894 TPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS 972 (2052)
Q Consensus 894 ~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~ 972 (2052)
++-|...+.+.++.+|.+|+..|..+.... ....... -...++.|...|.+.+..++..|+.+|+.++..-.......
T Consensus 14 ~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 14 LPQMVQQLNSPDQQELQSALRKLSQIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 456778889999999999999999987421 1110000 12477889999999999999999999999874322221222
Q ss_pred h-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC
Q 000146 973 S-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1044 (2052)
Q Consensus 973 ~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~ 1044 (2052)
. ...+|.++..|.+.++.+|..|..+|..+..... -..+++.+...|.+. ++.+|..++..|........
T Consensus 93 ~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 93 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCH
T ss_pred HHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCc
Confidence 2 3478999999999999999999999999875321 123678888888875 68899999988887654322
Q ss_pred CCC-c--hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1045 GFP-D--AAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1045 ~~~-~--~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
... . ....+..++..+.+.+.+||+.|..+|..+.
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 110 1 1235666888999999999999999987664
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.1e-05 Score=88.32 Aligned_cols=183 Identities=12% Similarity=0.094 Sum_probs=136.0
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcC-CCCCCCC-hHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh-hhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPGD-FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 404 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~-~ki~~~d-y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 404 (2052)
.+...+.+.++..|..|+..|..++.. +.....- -...++.|...+.+.+..|+..|+.+|+.|+..-...... ...
T Consensus 58 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 137 (252)
T 4db8_A 58 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA 137 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC
Confidence 466667888899999999999988742 1110000 0136778888899889999999999999998654333122 233
Q ss_pred hHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHH
Q 000146 405 FLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAV 478 (2052)
Q Consensus 405 ~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~-l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l 478 (2052)
.++|.|+..+.+..+.|+..+..+|..+... ... . ..+++.|...+++.++.+|..++..|..+.... +...
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~ 215 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASG-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQK 215 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHH
Confidence 5899999999999999999999999998753 111 1 235677888899999999999999999876433 2222
Q ss_pred HHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 479 LKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 479 ~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
.... ..+++.+..++.+.+++||..|..+|+.+.
T Consensus 216 ~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 2222 348899999999999999999999998664
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0014 Score=70.00 Aligned_cols=175 Identities=14% Similarity=0.152 Sum_probs=122.5
Q ss_pred cccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhh-ccchHHHHHHHHHHHHHHHHHhChhhH
Q 000146 892 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL-YDSNKNLVMATLITLGAVASAMGPAVE 970 (2052)
Q Consensus 892 ~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL-~DsN~~V~~~Al~~l~~la~alg~~~~ 970 (2052)
.+.++++..+.|.-|.+|++|+.-+-.++.. -|..+..+..-|...+ ++--..+-+.-.+.+|.++..-.
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~-----~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P---- 102 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKT-----REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---- 102 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH----
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCH----
Confidence 3556788889999999999999999888753 1222233333333333 23233333444455555553321
Q ss_pred HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC--C
Q 000146 971 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG--F 1046 (2052)
Q Consensus 971 ~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~--~ 1046 (2052)
..++.++|.++..+.-..+.+|=-...+|..++...+ +..++..+...|.++ |-.-|..++.|+.. ++. .
T Consensus 103 e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltsk--d~~Dkl~aLnFi~a----lGen~~ 176 (253)
T 2db0_A 103 ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSK--NREDKLTALNFIEA----MGENSF 176 (253)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCS--SHHHHHHHHHHHHT----CCTTTH
T ss_pred HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHH----HhccCc
Confidence 3577889999999988888888888899999999876 455666777777765 56678999998873 222 1
Q ss_pred CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1047 PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1047 ~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
..+.++++-++..|.|+|.-||..|.++|..+...
T Consensus 177 ~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 177 KYVNPFLPRIINLLHDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp HHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS
T ss_pred cccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHc
Confidence 24567777799999999999999999999766543
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0019 Score=72.30 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=145.6
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhH
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKG 975 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ 975 (2052)
.++..+.++|-.++..++..+++++..+++....-.+.++++.+...+.+.|-.|...|++|++.+.....-.=+.| ..
T Consensus 37 ~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y-~K 115 (265)
T 3b2a_A 37 LILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF-LK 115 (265)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH-HH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH-HH
Confidence 46677899999999999999999998764444444568899999999999999999999999999998766554444 45
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHH
Q 000146 976 VLSDILKCLGDNKKHMRECTLTVLDAWLAAVH-LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLK 1054 (2052)
Q Consensus 976 llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~-l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~ 1054 (2052)
+.-++.....+++..++..+.+.++.+ ..+. ...++..+...+.++ +++++...+..+.........+..+..++.
T Consensus 116 l~~aL~dlik~~~~il~~eaae~Lgkl-kv~~~~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i~~~I~~ 192 (265)
T 3b2a_A 116 AAKTLVSLLESPDDMMRIETIDVLSKL-QPLEDSKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGHLTLILD 192 (265)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHC-CBSCCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCCGGGTTT
T ss_pred HHHHHHHHhcCCCchHHHHHHHHhCcC-CcccchHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHHHHHHHH
Confidence 677888888999999999999999998 4333 577888889989655 799999999998875554444445667777
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1055 PASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1055 pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
.+-..|...++.+++.|-.++..+.
T Consensus 193 eI~elL~~eD~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 193 EIPSLLQNDNEFIVELALDVLEKAL 217 (265)
T ss_dssp THHHHHTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 7888888889999999988776554
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00082 Score=80.55 Aligned_cols=172 Identities=14% Similarity=0.109 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCh--HHHHHHHHH-HhcCcCHHHHHHHHHHHHHHHHHhhhcchhhh--hhHHHHHHHH
Q 000146 339 SERKDAVAELTKLASTKRIAPGDF--TEVCRTLKK-LITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEK 413 (2052)
Q Consensus 339 keR~eaL~~L~~L~~~~ki~~~dy--~~l~~~L~k-~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~k 413 (2052)
.+|..|++.|..++...... .++ ...++.|.. .+.+.+..|+..|+.+|+.++..-. ....++ ...+|.|+..
T Consensus 55 e~k~~Al~~L~~lv~~~dna-~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~-~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNA-ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHH-HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhH-HHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH-HHHHHHHHCCCHHHHHHH
Confidence 46888899888877431100 011 123456666 8888999999999999999986421 122221 2578999999
Q ss_pred hcc-CcHHHHHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhH
Q 000146 414 LKE-KKPTVAESLTQTLQAMHKAGCLN-L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDY 485 (2052)
Q Consensus 414 lkd-kK~~V~~aa~~aL~ai~~~~~~~-l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l 485 (2052)
++. .+..|+..+.-||..++.+ ... . ...++.|...|++.++.+|..++..|..+....+ ....... ..+
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~-~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~-~~~~~vv~~g~ 210 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGM 210 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHTTH
T ss_pred HccCCCHHHHHHHHHHHHHHHcC-CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh-HHHHHHHHcCC
Confidence 984 5889999999999999864 111 1 1356677788899999999999999998776532 2222222 348
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 486 VPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 486 ~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
+|.|+.+|...++.||+.|..+++.|...
T Consensus 211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 211 VQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 89999999999999999999999988755
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0044 Score=69.33 Aligned_cols=180 Identities=14% Similarity=0.133 Sum_probs=139.7
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLL 407 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~ll 407 (2052)
++.+.+.+++=+.-..|+..|..|+.+-.+.+.+|.-+..+|...+++.|..+...|+..+|.+ ......+.++
T Consensus 79 ~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl------kv~~~~~~V~ 152 (265)
T 3b2a_A 79 VFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL------QPLEDSKLVR 152 (265)
T ss_dssp HHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC------CBSCCCHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC------CcccchHHHH
Confidence 5666667777777778899999988766688889999999999999999999999998888877 2233456677
Q ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000146 408 PVLLEKLKEKKPTVAESLTQTLQAMHKAG--CLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 485 (2052)
Q Consensus 408 p~LL~klkdkK~~V~~aa~~aL~ai~~~~--~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 485 (2052)
..++..++.++..|..++..++..+..++ ...+..++..|...+++++|.++.-++..+.+++...-...+.+.+..+
T Consensus 153 ~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~ 232 (265)
T 3b2a_A 153 TYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKI 232 (265)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHH
Confidence 77777778899999999999999998761 1238899999999999999999999999999988764333333333444
Q ss_pred HHHHHHhh-cCCChHHHHHHHHHHHHHHH
Q 000146 486 VPICMECL-NDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 486 ~p~l~k~l-~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
...+..+. -...|.+|+.|+.....+-.
T Consensus 233 ~~~v~~l~~~~~~~~~~~ka~~v~~~le~ 261 (265)
T 3b2a_A 233 SRIVDGLVYREGAPIIRLKAKKVSDLIDS 261 (265)
T ss_dssp HHHHHHGGGCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHHHH
Confidence 44444444 58889999999877665543
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.004 Score=74.54 Aligned_cols=168 Identities=14% Similarity=0.118 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHh---ccccCCCCChhhHHHHHHh-hhccchHHHHHHHHHHHHHHHHHhChhhHHhhh--HHHHHH
Q 000146 907 KVRLESIEAVNKILEE---ANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDI 980 (2052)
Q Consensus 907 k~R~eale~L~~ll~~---a~~~I~~~~~~eL~~aL~~-rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~--~llp~l 980 (2052)
..|..|++.|..+++. ++.... .| .++.|.. .|...+..|+..|+.+|+.++.. .+.+...+- ..+|.+
T Consensus 55 e~k~~Al~~L~~lv~~~dna~~~~~---~G-~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~-n~~~~~~vv~~g~l~~L 129 (296)
T 1xqr_A 55 QEREGALELLADLCENMDNAADFCQ---LS-GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHH---TT-HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHhChhhHHHHHH---cC-CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHH
Confidence 4688999999998862 111111 13 3456677 88899999999999999999853 233333322 588999
Q ss_pred HHHhC-CCcHHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC-Cch--
Q 000146 981 LKCLG-DNKKHMRECTLTVLDAWLAAVHL-------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF-PDA-- 1049 (2052)
Q Consensus 981 l~~l~-D~k~~VR~aa~~aL~~i~~~~~l-------~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~-~~~-- 1049 (2052)
+..|. +.+..+|..|..||..++..... ...+|.|...|.++ ++.+|..++..|.......... ..+
T Consensus 130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv~ 207 (296)
T 1xqr_A 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCS 207 (296)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 99998 46889999999999998864321 23567888888875 5888998887777655442211 111
Q ss_pred hhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1050 AHLLKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1050 ~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
...+++++..|.+.+.+||..|..+|..+...
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 24677799999999999999999999988876
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.52 Score=61.28 Aligned_cols=376 Identities=13% Similarity=0.054 Sum_probs=205.1
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhh--hHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhh---hhh-
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRY--AKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVEL---EAV- 165 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~--~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~---~~~- 165 (2052)
.+.+-+++...|..+|..|..+|..+...... .... -...|+.||+- |. ..+.+++.|..++..+... +.-
T Consensus 50 i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~L-L~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGL-LDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHH-HCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 45556688889999999999888766533222 1111 12467888877 65 6889999999999888753 111
Q ss_pred ----hhHHHHHHHHhhc-cChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhh------------------CCCChh
Q 000146 166 ----DVFLDVMEKAIKN-KVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF------------------DHQDQN 222 (2052)
Q Consensus 166 ----~~v~e~Ll~~l~~-K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll------------------~~~dk~ 222 (2052)
...++.|+..+.. ..+.++..+..+|..+-..--.+..=.+.-++.|..++ ...|..
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~ 207 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWES 207 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHH
Confidence 2356667777775 56667777666665543211111000112234444433 234679
Q ss_pred HHHHHHHHHHHHHHhhCCchhhHHHH--hhChHHHHHHHHHHHHhccCCCCCC----ccchhhhhHhhhhcccccCCCCC
Q 000146 223 VRASSKGLTLELCRWIGKDPVKTILF--EKMRDTMKKELEVELVNVSGTARPT----RKIRAEQDKELGQELISEDVGPG 296 (2052)
Q Consensus 223 VR~~a~~l~vely~~lG~~~l~~~L~--~~Lkp~qlkeLe~~f~~~~~~~~p~----R~~rs~~~~~~~~~~~~~~~~~~ 296 (2052)
|+..|..++..|...- ++ .+..+. ..+-+..+.-|.....+......-. ..+|.-.. .... +..
T Consensus 208 V~~nAa~~L~NLs~~~-~~-~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~-~~~~----e~~--- 277 (584)
T 3l6x_A 208 VLTNTAGCLRNVSSER-SE-ARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSY-QVHR----EIP--- 277 (584)
T ss_dssp HHHHHHHHHHHHTSSC-HH-HHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHT-THHH----HST---
T ss_pred HHHHHHHHHHHHhcCC-HH-HHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhc-cccc----ccc---
Confidence 9999999988876421 11 122221 2333333444433222111000000 00000000 0000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCC-ChHHHHHHHHHHhc-
Q 000146 297 PSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPG-DFTEVCRTLKKLIT- 374 (2052)
Q Consensus 297 ~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~-dy~~l~~~L~k~l~- 374 (2052)
..+.| .+. .+ . +........++-... --..+++.|..++.
T Consensus 278 -----------~~~~~--~~~------~~-~------------------~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~ 319 (584)
T 3l6x_A 278 -----------QAERY--QEA------AP-N------------------VANNTGTSPARGYELLFQPEVVRIYISLLKE 319 (584)
T ss_dssp -----------TCCC-----------------------------------------CCCCGGGGGGSHHHHHHHHHHHHH
T ss_pred -----------chhhh--hhh------cc-c------------------ccccccccCchhHHHHhcccHHHHHHHHHcc
Confidence 00011 000 00 0 000001111111110 11356777888886
Q ss_pred CcCHHHHHHHHHHHHHHHHHhh---hcchhhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH-----HHHH
Q 000146 375 DVNIAVAVEAIQAIGNLARGLR---THFSGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVV 444 (2052)
Q Consensus 375 D~N~~V~~~A~~~l~~La~~L~---~~f~~~~--~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l-----~~ll 444 (2052)
..+..+...|+-+|..|+.+-. ..+...+ ...+|.|++.+......|+.++..||.++... ... ...+
T Consensus 320 s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~--~~~~~~I~~g~i 397 (584)
T 3l6x_A 320 SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD--ARNKELIGKHAI 397 (584)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTT--CSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCC--hhHHHHHHhCCH
Confidence 5688999999999999986431 1222222 35699999999999999999999999999875 232 2345
Q ss_pred HHHHHHhhcC--------ChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHhhcCC--ChHHHHHHHHHHHHHHH
Q 000146 445 EDVKTSVKNK--------VPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG--TPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 445 ~~l~~~L~~K--------np~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds--~~~VR~aA~~~l~~l~~ 513 (2052)
+.|..-|.+. +..+...++..|..++...+.. ..... ...+|.|+.++.+. .+.++++|..+|..++
T Consensus 398 p~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~-~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~- 475 (584)
T 3l6x_A 398 PNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA-AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW- 475 (584)
T ss_dssp HHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH-HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH-
Confidence 6666666654 3467778888888777543322 11222 34889999999876 7788777777776554
Q ss_pred HhCChhHHHhH
Q 000146 514 SVGMRPLERSI 524 (2052)
Q Consensus 514 ~~Ge~~~~~~l 524 (2052)
.++.+...+
T Consensus 476 --~~~elr~~~ 484 (584)
T 3l6x_A 476 --GYKELRKPL 484 (584)
T ss_dssp --TSHHHHHHH
T ss_pred --cCHHHHHHH
Confidence 555444443
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00014 Score=76.18 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH
Q 000146 363 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 442 (2052)
Q Consensus 363 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ 442 (2052)
..-...|...++|.+..|+..|+.+++.+. . + -++.|++.++|..+.||..+..+|..+. -..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~----~---~----~~~~L~~~L~d~~~~vR~~A~~aL~~~~------~~~ 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG----D---E----AFEPLLESLSNEDWRIRGAAAWIIGNFQ------DER 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS----S---T----THHHHHHGGGCSCHHHHHHHHHHHGGGC------SHH
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC----c---h----HHHHHHHHHcCCCHHHHHHHHHHHHhcC------CHH
Confidence 344566777788888888888877766442 1 1 1488888899999999988777765442 246
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 000146 443 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 510 (2052)
Q Consensus 443 ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 510 (2052)
.++.|...+++.+|.||..++..|..+- . +..++.|.+++.|.++.||.+|..+|+.
T Consensus 74 a~~~L~~~L~d~~~~VR~~A~~aL~~~~---~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 74 AVEPLIKLLEDDSGFVRSGAARSLEQIG---G--------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHC---S--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC---c--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 6788888889999999999999888642 1 3457888899999999999999998864
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=96.83 E-value=3.6 Score=57.41 Aligned_cols=141 Identities=6% Similarity=0.072 Sum_probs=98.7
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc-----cchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000146 904 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-----DSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 978 (2052)
Q Consensus 904 ~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~-----DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp 978 (2052)
.+|+.|..++=.++.|............+..+++.|...+. |.+..|+..++-++|..+.-+..+ ..|++.++.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 58999999999999987521111011113556666666554 566667778889999988877433 457888999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----------hhhHHHHHHHHhc--CccChhHHHHHHHHHHHHhccCCC
Q 000146 979 DILKCLGDNKKHMRECTLTVLDAWLAAVHL----------DKMVPYVTTALTD--AKLGAEGRKDLFDWLSKQLTGLSG 1045 (2052)
Q Consensus 979 ~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l----------~~ll~~l~~~L~~--~k~np~~R~~~l~~L~~~l~~~~~ 1045 (2052)
.+++.+.|.++.|..+|..|+..+++.|+- ..+++.+...+.. .+..+..+..+.+.+...+...+.
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~ 622 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERS 622 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999998862 1245544443331 123466677788888877776653
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=96.70 E-value=3.9 Score=56.99 Aligned_cols=176 Identities=13% Similarity=0.089 Sum_probs=122.7
Q ss_pred HHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHhhhcch-hhhhhHHHHHHHHhccC-----cHHHHHHHHHHHHH---H
Q 000146 364 EVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFS-GSSRFLLPVLLEKLKEK-----KPTVAESLTQTLQA---M 432 (2052)
Q Consensus 364 ~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~-~~~~~llp~LL~klkdk-----K~~V~~aa~~aL~a---i 432 (2052)
-++..|.+.+. ..+-+....+|=++|.+|..+....+ ++...+++.|+.....+ |+.|+....=++.. |
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w 556 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF 556 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence 34555665555 34577888899999999987876554 78889999998776433 55565544333332 2
Q ss_pred HHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH-------HHHhhhhHHHHHHHhhcCCChHHHHHHH
Q 000146 433 HKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA-------VLKVHKDYVPICMECLNDGTPEVRDAAF 505 (2052)
Q Consensus 433 ~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~-------l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 505 (2052)
......-++.++..|..++.+.++.|...++..+..+.+.|...- ..+++..++..+..+..+=.++-.-.-.
T Consensus 557 l~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ly 636 (1073)
T 3gjx_A 557 LRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFY 636 (1073)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 222112367888888999999999999999999988888776532 1246777777778888888888888889
Q ss_pred HHHHHHHHHhCChh-HHHhHhhccHHHHHHHHHHH
Q 000146 506 SVLAAIAKSVGMRP-LERSIEKLDDVRRNKLSEMI 539 (2052)
Q Consensus 506 ~~l~~l~~~~Ge~~-~~~~l~~Ld~~k~kkI~e~~ 539 (2052)
+|++.+....|... ...++..|=+.--.+..+.+
T Consensus 637 eav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~ 671 (1073)
T 3gjx_A 637 EAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSII 671 (1073)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998643 45566665444444444444
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=5.2 Score=56.98 Aligned_cols=381 Identities=12% Similarity=0.047 Sum_probs=194.7
Q ss_pred HHHHHHHhhhchhhhHHHHHHHHHHHhhhC-hh-------HH----HHHHHHHHhhCC--C-HHHHHHHHHHHHHHHHHh
Q 000146 724 CLLGISERVADIKTRAHAMKCLTTFSEAVG-PG-------FI----FERLYKIMKDHK--N-PKVLSEGILWMVSAVEDF 788 (2052)
Q Consensus 724 il~~LveKlgd~K~r~~a~e~L~~l~E~~~-~~-------~V----l~~L~~~l~~~K--n-pKv~~e~L~~L~~~i~~f 788 (2052)
+++.++.-+.++.+|..|.+||..++.... ++ .+ +..++..+.... . ...-.+.+..+++++..+
T Consensus 250 ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~l 329 (1204)
T 3a6p_A 250 LLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCAL 329 (1204)
T ss_dssp HHHHHHHGGGCTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHH
Confidence 566666667788899999999999987542 21 00 223443321010 0 111223334444444443
Q ss_pred C-------------CCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcC
Q 000146 789 G-------------VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 855 (2052)
Q Consensus 789 G-------------~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~ 855 (2052)
| ...-.+..+++.+..+ +.|++..|-..+...-..+.+.....-...+...-+.++..+...+.|+
T Consensus 330 g~~l~~l~~~~~~~~~~~~l~~~l~~lL~~-t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~ 408 (1204)
T 3a6p_A 330 GNQLCALLGADSDVETPSNFGKYLESFLAF-TTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKM 408 (1204)
T ss_dssp HHHHHHHHHTCSSCCCCTTHHHHHHHHHHH-HTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhccccccChhHHHHHHHHHHHH-HhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHh
Confidence 3 1122466788888887 8898888887777766656555321111122233344444444446777
Q ss_pred CCCCCCC-CccccccccccCCCCC--C--------CCCC------CCcccccccccHHHHhhcC----------------
Q 000146 856 PFEGTVV-PKKTVRASESTSSVSS--G--------GSDG------LPREDISGKFTPTLVKSLE---------------- 902 (2052)
Q Consensus 856 ~~~~~p~-p~r~~r~~~~~~~~~~--~--------~~d~------lpr~dIs~~i~~~ll~~l~---------------- 902 (2052)
.+..... |....- ..+.....+ . ..|. +-+.+....+.+-+...+.
T Consensus 409 ~yp~~~~~~~~~~~-~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~ 487 (1204)
T 3a6p_A 409 GFPSKTDSPSCEYS-RFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGT 487 (1204)
T ss_dssp CCSSCCSSTHHHHH-HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTCC--------------
T ss_pred cCccccCCcchhhh-hcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhhhccccccccccccc
Confidence 5511000 000000 000000000 0 0000 0000011001111111111
Q ss_pred ---------CCChHHHHHHHHHHHHHHHhccccC-CCCChhhHHHHHHhhh---ccchHHHHHHHHHHHHHHHHHhChhh
Q 000146 903 ---------SPDWKVRLESIEAVNKILEEANKRI-QPAGTGELFGGLRGRL---YDSNKNLVMATLITLGAVASAMGPAV 969 (2052)
Q Consensus 903 ---------d~~Wk~R~eale~L~~ll~~a~~~I-~~~~~~eL~~aL~~rL---~DsN~~V~~~Al~~l~~la~alg~~~ 969 (2052)
+..|..+......++.++....... .+.....++..|...+ ...+..++..++.+++.+..-....
T Consensus 488 ~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~- 566 (1204)
T 3a6p_A 488 GEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYR- 566 (1204)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTC-
T ss_pred ccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcC-
Confidence 2357776665556666655421111 1222123344444432 3457789999999998777654422
Q ss_pred HHhhhHHHHHHHHHhCC------------CcHHHHHHHHHHHHHHHHhcC--c----hhhHHHHHHHHhcCc-cChhHHH
Q 000146 970 EKSSKGVLSDILKCLGD------------NKKHMRECTLTVLDAWLAAVH--L----DKMVPYVTTALTDAK-LGAEGRK 1030 (2052)
Q Consensus 970 ~~~~~~llp~ll~~l~D------------~k~~VR~aa~~aL~~i~~~~~--l----~~ll~~l~~~L~~~k-~np~~R~ 1030 (2052)
..|+..++..|+..+.+ ..+.||.+|..++..++..++ + +.+...+...+.... .....+.
T Consensus 567 p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~ 646 (1204)
T 3a6p_A 567 PEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNELLLTQMEKC 646 (1204)
T ss_dssp GGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTTTSCHHHHH
T ss_pred chHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcccccHHHHH
Confidence 25677777777777766 456899999999999999885 2 333334444454333 3455566
Q ss_pred HHHHHHHHHhccCCCC---Cc-hhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHH--H----
Q 000146 1031 DLFDWLSKQLTGLSGF---PD-AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPAL--A---- 1100 (2052)
Q Consensus 1031 ~~l~~L~~~l~~~~~~---~~-~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~--~---- 1100 (2052)
.+.+.+...-...+.. .. +..++.|++..+.+ ++++.+ ......|+..+|-+....+....++..+ .
T Consensus 647 ~L~eal~~ia~~~~~~~~~~~~l~~ll~P~~~~w~~--~~~~~~-~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~ 723 (1204)
T 3a6p_A 647 ALMEALVLISNQFKNYERQKVFLEELMAPVASIWLS--QDMHRV-LSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSF 723 (1204)
T ss_dssp HHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHSC--HHHHHH-HHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHcc--HHHHHh-hcCHHHHHHHhCCCCCcccccccchhhhhHHHHHH
Confidence 6666665431122221 22 56678888877764 456653 4445788899987666555554554322 3
Q ss_pred ---HHHHHHhhcc
Q 000146 1101 ---LILERIKLNG 1110 (2052)
Q Consensus 1101 ---~I~~~l~k~~ 1110 (2052)
.+...+++.+
T Consensus 724 ~~~~l~~~l~r~~ 736 (1204)
T 3a6p_A 724 CVYSILGVVKRTC 736 (1204)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhc
Confidence 5667777643
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.04 Score=67.20 Aligned_cols=283 Identities=9% Similarity=0.049 Sum_probs=130.8
Q ss_pred CCCchhhHHHHHHHHHHhhhch--hhhHHHHHHHHHHHhhhChh--HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhC
Q 000146 714 TKFPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG--FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG 789 (2052)
Q Consensus 714 ~~~~~~~~~~il~~LveKlgd~--K~r~~a~e~L~~l~E~~~~~--~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG 789 (2052)
..|+...+..+.+.++.-+... ..|....-.+..+++. ..+ .+.+.+.+-+ +++||-+|.-++..|+.+..
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~iLv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~--- 133 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVIIVTSSLTKDM-TGKEDSYRGPAVRALCQITD--- 133 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGGGGHHHHHHHH-HSSCHHHHHHHHHHHHHHCC---
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhc-CCCcHhHHHHHHHHHhcCCC---
Confidence 4577766667777777655543 3566666566666554 222 3566666665 89999999999999988752
Q ss_pred CCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcccccc
Q 000146 790 VSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRA 869 (2052)
Q Consensus 790 ~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~ 869 (2052)
.+ -+..+...++.+ +.|.||.||.+|.-+...||....+-++.|++
T Consensus 134 ~~--m~~~l~~~lk~~-L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~------------------------------- 179 (355)
T 3tjz_B 134 ST--MLQAIERYMKQA-IVDKVPSVSSSALVSSLHLLKCSFDVVKRWVN------------------------------- 179 (355)
T ss_dssp TT--THHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHH-------------------------------
T ss_pred HH--HHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH-------------------------------
Confidence 11 246788889997 99999999999999887777554333333322
Q ss_pred ccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhh-hccchH
Q 000146 870 SESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGR-LYDSNK 948 (2052)
Q Consensus 870 ~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~r-L~DsN~ 948 (2052)
++.+.+.|+|-.+-..|+..+.++.... ...+..++..|... +. +.
T Consensus 180 --------------------------~l~~ll~d~n~~V~~~Al~lL~ei~~~d-----~~a~~kLv~~l~~~~l~--~~ 226 (355)
T 3tjz_B 180 --------------------------EAQEAASSDNIMVQYHALGLLYHVRKND-----RLAVSKMISKFTRHGLK--SP 226 (355)
T ss_dssp --------------------------HHHHHTTCSSHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHSSCCS--CH
T ss_pred --------------------------HHHHHhcCCCccHHHHHHHHHHHHHhhc-----hHHHHHHHHHHhcCCCc--Ch
Confidence 2222233344333344555555544210 00012222222221 11 22
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcCccCh
Q 000146 949 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDAKLGA 1026 (2052)
Q Consensus 949 ~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~k~np 1026 (2052)
-....-++++..++. .+-......++..+...|......|.=.|..++-.+-.... ....+..+...|.++ ++
T Consensus 227 ~~q~~llr~l~~~~~---~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss~--d~ 301 (355)
T 3tjz_B 227 FAYCMMIRVASRQLE---DEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSSP--KA 301 (355)
T ss_dssp HHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHSS--SS
T ss_pred HHHHHHHHHHHHhcc---ccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcCC--Cc
Confidence 222222232222221 11123345666777777888888888777777777644211 122344566667765 47
Q ss_pred hHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHH
Q 000146 1027 EGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACI 1075 (2052)
Q Consensus 1027 ~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L 1075 (2052)
.+|.-++..|.......+. -+...-.-+..|+.|.|..++--|...|
T Consensus 302 niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 302 ALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTL 348 (355)
T ss_dssp SSHHHHHHCC---------------------------------------
T ss_pred hHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHh
Confidence 8899999888877665442 1222333388899999998887775544
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.19 Score=66.52 Aligned_cols=363 Identities=13% Similarity=0.103 Sum_probs=198.2
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc----hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD----QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 718 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~----~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 718 (2052)
+.+...+.+. ..|.-|.--|.++........ ...+.+.++|.. .....++.+++.|.++... +. .+
T Consensus 299 ~~L~~~l~~~--~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~------~~~~~~~~AvEgLaYLSl~-~~-VK 368 (778)
T 3opb_A 299 QLLERSLNVE--DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISR------RIVPKVEMSVEALAYLSLK-AS-VK 368 (778)
T ss_dssp HHHHHHTTSG--GGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTT------CCHHHHHHHHHHHHHHTTS-SH-HH
T ss_pred HHHHHHhccH--HHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHhCC-HH-HH
Confidence 4445555442 567777778887765532221 223455555542 1112377788888765432 11 11
Q ss_pred hhH---HHHHHHHHHhhhchhhhHHHHHHHHHHHhh---hCh----hHHHHHHHHHHhhCCCHHHHH---------HHHH
Q 000146 719 KCV---VLCLLGISERVADIKTRAHAMKCLTTFSEA---VGP----GFIFERLYKIMKDHKNPKVLS---------EGIL 779 (2052)
Q Consensus 719 ~~~---~~il~~LveKlgd~K~r~~a~e~L~~l~E~---~~~----~~Vl~~L~~~l~~~KnpKv~~---------e~L~ 779 (2052)
..+ ..++..|++-+.+.........++..++.. ... +.-+.+|..++ +++.|+... +...
T Consensus 369 e~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A-~~~~p~~~~~d~~~~~~~~v~~ 447 (778)
T 3opb_A 369 IMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXX-XXXXPAADKVGAEKAAKEDILL 447 (778)
T ss_dssp HHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------------CCTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhc-cccCcccCcccccccchHHHHH
Confidence 111 345666666655322223333344444332 211 12345555554 222332211 1111
Q ss_pred HHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000146 780 WMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 859 (2052)
Q Consensus 780 ~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~ 859 (2052)
+-...+-+. .+++.+..+ +.+.++.+|..|..++..|-.. +..+..+-+ ++
T Consensus 448 ~~~~~l~ea--------GvIp~Lv~L-l~S~s~~~re~A~~aL~nLS~d--~~~R~~lvq------------------qG 498 (778)
T 3opb_A 448 FNEKYILRT--------ELISFLKRE-MHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQ------------------QG 498 (778)
T ss_dssp HHHHHTTTT--------THHHHHHHH-GGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHH------------------TT
T ss_pred HHHHHHHHC--------cCHHHHHHH-HcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHH------------------CC
Confidence 122222222 356666666 8888999999999998888532 222222100 00
Q ss_pred CCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCCh---HHHHHHHHHHHHHHHhccccCC-C-CChhh
Q 000146 860 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDW---KVRLESIEAVNKILEEANKRIQ-P-AGTGE 934 (2052)
Q Consensus 860 ~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~W---k~R~eale~L~~ll~~a~~~I~-~-~~~~e 934 (2052)
..+.|+..+.+..- ..|..|...|..++...++.+- + ....+
T Consensus 499 ---------------------------------al~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~ 545 (778)
T 3opb_A 499 ---------------------------------AVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALN 545 (778)
T ss_dssp ---------------------------------HHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTT
T ss_pred ---------------------------------CHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCcccc
Confidence 01123333333321 3688999999999865444332 1 11136
Q ss_pred HHHHHHhhhc-cchH-------------HHHHHHHHHHHHHHHHhC---hhhH-Hhhh--HHHHHHHHHhCCCcHHHHHH
Q 000146 935 LFGGLRGRLY-DSNK-------------NLVMATLITLGAVASAMG---PAVE-KSSK--GVLSDILKCLGDNKKHMREC 994 (2052)
Q Consensus 935 L~~aL~~rL~-DsN~-------------~V~~~Al~~l~~la~alg---~~~~-~~~~--~llp~ll~~l~D~k~~VR~a 994 (2052)
.++.|...|. ++.. .-...|+.+|..||..-+ .+.. ..++ ..+|.+.+.+.+.+..||++
T Consensus 546 aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrA 625 (778)
T 3opb_A 546 AIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRS 625 (778)
T ss_dssp HHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHH
T ss_pred chHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHH
Confidence 8888888887 2321 126689999999987643 2333 3444 48899999999999999999
Q ss_pred HHHHHHHHHHhcC-c-hhh-----------HHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC----CchhhhHHHHH
Q 000146 995 TLTVLDAWLAAVH-L-DKM-----------VPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF----PDAAHLLKPAS 1057 (2052)
Q Consensus 995 a~~aL~~i~~~~~-l-~~l-----------l~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~----~~~~~ll~pl~ 1057 (2052)
|.+++..++.+.. + ..+ ++.+...+... +...|..+...|+..-...+.. -.....+..++
T Consensus 626 A~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll 703 (778)
T 3opb_A 626 TLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAI 703 (778)
T ss_dssp HHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHH
Confidence 9999999996442 2 233 44566666654 6788888887776542222210 11134666777
Q ss_pred hhcCC--CCHHHHHHHHHHHHHHHH
Q 000146 1058 IAMTD--KSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1058 ~~L~D--~~~dVRkaA~~~L~~l~~ 1080 (2052)
..|.| .+.++|..+..++.-+..
T Consensus 704 ~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 704 QVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHH
Confidence 78878 899999999999988886
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.54 Score=61.10 Aligned_cols=373 Identities=10% Similarity=0.062 Sum_probs=195.1
Q ss_pred HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhH--HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhh
Q 000146 677 SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCV--VLCLLGISERVAD--IKTRAHAMKCLTTFSEAV 752 (2052)
Q Consensus 677 ~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~--~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~ 752 (2052)
....||.+|. ..+..++..+...|..++..... .+..+ .-.||.||.-|.. ..++..|..+|..++...
T Consensus 49 ~i~~LV~~L~------s~~~~~q~~Aa~~L~~La~~~~~-~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 49 ELPEVIAMLG------FRLDAVKSNAAAYLQHLCYRNDK-VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CHHHHHHHTT------CSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred cHHHHHHHHC------CCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 3556676653 23456776677777666542111 12222 2357888887755 568889988998887531
Q ss_pred Chh--------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCC-CC---ChHhHHHHHH--hhCC-----------
Q 000146 753 GPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVS-HL---KLKDLIDFCK--DTGL----------- 807 (2052)
Q Consensus 753 ~~~--------~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~-~l---~~k~li~~l~--~~gL----------- 807 (2052)
+.+ =.++.|+..+....++.++..+...|..+-..-... .+ -+..|+..+. ..|.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~ 201 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccc
Confidence 111 135667777655567777766655554443200000 00 1223444331 0011
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhChhhHhhh---hhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCC
Q 000146 808 QSSAAATRNATIKLLGALHKFVGPDIKGFL---ADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGL 884 (2052)
Q Consensus 808 ~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L---~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~l 884 (2052)
...+..|+..|..+|..|-.. ++..+..+ +++.+.++..|.....+..... +.+...
T Consensus 202 ~~~d~~V~~nAa~~L~NLs~~-~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~-----~~~ena-------------- 261 (584)
T 3l6x_A 202 HIEWESVLTNTAGCLRNVSSE-RSEARRKLRECDGLVDALIFIVQAEIGQKDSDS-----KLVENC-------------- 261 (584)
T ss_dssp CCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSC-----HHHHHH--------------
T ss_pred ccccHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccH-----HHHHHH--------------
Confidence 233679999999999888642 22222222 4566777777776543321100 000000
Q ss_pred CcccccccccHHHHhhcC-CCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc-chHHHHHHHHHHHHHHH
Q 000146 885 PREDISGKFTPTLVKSLE-SPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD-SNKNLVMATLITLGAVA 962 (2052)
Q Consensus 885 pr~dIs~~i~~~ll~~l~-d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D-sN~~V~~~Al~~l~~la 962 (2052)
+-+...|.-.....+. ...|...... +...-... ....+..-.-..+++.|...|.+ .+..+...|+.+|..|+
T Consensus 262 --v~aL~NLs~~~~~e~~~~~~~~~~~~~-~~~~~~~~-~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ 337 (584)
T 3l6x_A 262 --VCLLRNLSYQVHREIPQAERYQEAAPN-VANNTGTS-PARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337 (584)
T ss_dssp --HHHHHHHHTTHHHHSTTCCC---------------C-CCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHhhccccccccchhhhhhhccc-cccccccc-CchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 0000000000000000 0000000000 00000010 11111110013456777778854 47889999999999998
Q ss_pred HHhCh---hhHHhh--hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchh-----hHHHHHHHHhcCc------cCh
Q 000146 963 SAMGP---AVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK-----MVPYVTTALTDAK------LGA 1026 (2052)
Q Consensus 963 ~alg~---~~~~~~--~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~-----ll~~l~~~L~~~k------~np 1026 (2052)
..-+. .+...+ ...+|.|++.|......|+.+|..+|..+........ .+|.+...|.+.. .+.
T Consensus 338 ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~ 417 (584)
T 3l6x_A 338 AGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSE 417 (584)
T ss_dssp SSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCH
T ss_pred cCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchH
Confidence 64332 222233 3569999999999999999999999999987665433 4566677676542 123
Q ss_pred hHHHHHHHHHHHHhccCCCC-Cc--hhhhHHHHHhhcCCC--CHHHHHHHHHHHHHHHH
Q 000146 1027 EGRKDLFDWLSKQLTGLSGF-PD--AAHLLKPASIAMTDK--SSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1027 ~~R~~~l~~L~~~l~~~~~~-~~--~~~ll~pl~~~L~D~--~~dVRkaA~~~L~~l~~ 1080 (2052)
++...++..|...+...... .. -...+++|+..|.+. ...++++|..+|..+..
T Consensus 418 ~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 418 DTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence 55666777776655432211 11 124567788888775 78888888877765543
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.012 Score=72.90 Aligned_cols=150 Identities=11% Similarity=0.066 Sum_probs=102.5
Q ss_pred chhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000146 327 SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406 (2052)
Q Consensus 327 ~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 406 (2052)
+.+...+-+.+|..|..|.-.|+.++....-..+-. ...|. ..|++++..+|- .+|.-|+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~-----------~~~N~---DLAvRLLCVLAL---DRFGDYV--- 236 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ-----------IRVDS---KLFSKIYEILVT---DKFNDFV--- 236 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC-----------CCCCT---THHHHHHHHHHH---BCCBBCS---
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee-----------ccccH---HHHHHHHHHHHh---ccccccc---
Confidence 456667789999999999999999874211111100 22232 455555555542 2343342
Q ss_pred HHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhH
Q 000146 407 LPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDY 485 (2052)
Q Consensus 407 lp~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l 485 (2052)
.|+ ...|||.+.++|.++ .+.... -.++..+...+.+..|++|.+.+.-|..+ .. +...++.+
T Consensus 237 --------SDqVVAPVRETaAQtLGaL-~hLp~e-~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~D-LL~~Ld~V 300 (800)
T 3oc3_A 237 --------DDRTVAPVRDAAAYLLSRI-YPLIGP-NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KE-FVEDKDGL 300 (800)
T ss_dssp --------SSSCBCHHHHHHHHHHHHH-TTTSCS-CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GG-GCCCHHHH
T ss_pred --------cCeeeeehHHHHHHHHHHH-HhCChh-HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HH-HHHHHHHH
Confidence 233 367999999999999 662222 35566665667888999999998888766 11 21126889
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 486 VPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 486 ~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
++++..+|.|.+-+||..|+++|.-+.
T Consensus 301 v~aVL~GL~D~DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 301 CRKLVSLLSSPDEDIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHhhcCCcccHHHHHHHHHhhhhc
Confidence 999999999999999999999997666
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.07 E-value=10 Score=54.10 Aligned_cols=185 Identities=12% Similarity=0.019 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHHhcC--CCCCCCChHHHHHHHHHHhc-------CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHH
Q 000146 338 WSERKDAVAELTKLAST--KRIAPGDFTEVCRTLKKLIT-------DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 408 (2052)
Q Consensus 338 WkeR~eaL~~L~~L~~~--~ki~~~dy~~l~~~L~k~l~-------D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 408 (2052)
=..|.-|+..|...+.. ..+...+...|-..|...+. +....|+...+.+|..+++.--+ .....+++
T Consensus 61 ~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~ 137 (1204)
T 3a6p_A 61 AIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLI 137 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHH
Confidence 34566666666665421 22333333333334444433 14577888889999998876332 34667888
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHh-cC-----------------CCHHHHHHHHHHHhhc-----------------
Q 000146 409 VLLEKLKEKKPTVAESLTQTLQAMHKA-GC-----------------LNLVDVVEDVKTSVKN----------------- 453 (2052)
Q Consensus 409 ~LL~klkdkK~~V~~aa~~aL~ai~~~-~~-----------------~~l~~ll~~l~~~L~~----------------- 453 (2052)
.|+..+.. ....++.+..+|..+.+- .. ..+.++++.+...+++
T Consensus 138 ~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~ 216 (1204)
T 3a6p_A 138 ELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESK 216 (1204)
T ss_dssp HHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhh
Confidence 88877754 455577777777777542 00 0122344444334432
Q ss_pred --CChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCC-hhHHHhHhhcc
Q 000146 454 --KVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGM-RPLERSIEKLD 528 (2052)
Q Consensus 454 --Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge-~~~~~~l~~Ld 528 (2052)
.++.++..+++.+..++.-.+...+...-..+++.+..++.| +++|.+|.+||..++..-.. ....+++.-+.
T Consensus 217 ~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~ 292 (1204)
T 3a6p_A 217 AQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFG 292 (1204)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGS
T ss_pred hhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHh
Confidence 123455556665555444223222211112478888888875 78999999999999864332 22233444443
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.36 Score=61.35 Aligned_cols=390 Identities=12% Similarity=0.028 Sum_probs=206.5
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhh-hh-hHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhh-h-hhh-
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAG-RY-AKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVEL-E-AVD- 166 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~-~~-~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~-~-~~~- 166 (2052)
.+.+-+++...|..+|+.|+.+|..+...... .. .. ....++.||+- |. ..+.++..|..++..+... + .-.
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~l-L~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDL-LRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34455677888999999999999887633221 11 11 23467888865 65 6788999999998887753 1 112
Q ss_pred ----hHHHHHHHHhh-ccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhh--------CC--------CChhHHH
Q 000146 167 ----VFLDVMEKAIK-NKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELF--------DH--------QDQNVRA 225 (2052)
Q Consensus 167 ----~v~e~Ll~~l~-~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll--------~~--------~dk~VR~ 225 (2052)
..++.|+..+. +.+++++..++.+|..+-..-..+..=....++.|..++ ++ .+..|..
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 33567778887 778999999988888776431111100125677777877 22 3456666
Q ss_pred HHHHHHHHHHHhhCCchhhHHHHh--hChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCC
Q 000146 226 SSKGLTLELCRWIGKDPVKTILFE--KMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTA 303 (2052)
Q Consensus 226 ~a~~l~vely~~lG~~~l~~~L~~--~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (2052)
.|..++..|... ++ .+..+.+ +.-|..+..|........ ...+... ...... ..-+... ..
T Consensus 162 ~a~~aL~nLs~~--~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~---~~~~~~e-~a~~~L--~nLs~~~-~~------- 224 (457)
T 1xm9_A 162 NATGCLRNLSSA--DA-GRQTMRNYSGLIDSLMAYVQNCVAASR---CDDKSVE-NCMCVL--HNLSYRL-DA------- 224 (457)
T ss_dssp HHHHHHHHHTTS--HH-HHHHHTTSTTHHHHHHHHHHHHHHHTC---TTCTTHH-HHHHHH--HHHTTTH-HH-------
T ss_pred HHHHHHHHHccC--HH-HHHHHHHcCCCHHHHHHHHHhhccccC---CchHHHH-HHHHHH--Hhcccch-hc-------
Confidence 888887777754 22 2233321 333444444433221110 0001000 000000 0000000 00
Q ss_pred CCCCCCCCCC-CCC-cccccCcCccchhhhhcccCChHHHHHHHHHHHHHh---cCCCCCC-CChHHHHHHHHHHhc-Cc
Q 000146 304 DVPPEIDEYE-LVD-PVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA---STKRIAP-GDFTEVCRTLKKLIT-DV 376 (2052)
Q Consensus 304 ~~~~~iD~~d-l~~-~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~---~~~ki~~-~dy~~l~~~L~k~l~-D~ 376 (2052)
+.+...+... ... ..... ... ..|. ....+. +..+.+ + .+. ..++-.. --..++++.|...+. ..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~~---~~~~~~-~-~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~ 296 (457)
T 1xm9_A 225 EVPTRYRQLEYNARNAYTEK-SST-GCFS-NKSDKM---MNNNYD-C-PLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK 296 (457)
T ss_dssp HSCCHHHHHHHTC------------------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC
T ss_pred cCcchhhhcccccccccccc-ccc-chhh-ccchhh---hhcccc-C-CccccccCchHHHHHhCcchHHHHHHHHhhcC
Confidence 0000000000 000 00000 000 0110 000000 000000 0 000 0010000 012456777778887 55
Q ss_pred CHHHHHHHHHHHHHHHHHhhh---cc-hhhh--hhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH-----HHHHH
Q 000146 377 NIAVAVEAIQAIGNLARGLRT---HF-SGSS--RFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-----VDVVE 445 (2052)
Q Consensus 377 N~~V~~~A~~~l~~La~~L~~---~f-~~~~--~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l-----~~ll~ 445 (2052)
+..+...|+-+|..|+.+-.+ .. ...+ ...+|.|++.+......|+..+..+|..+..+ ... ...++
T Consensus 297 ~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~~~~~i~~~~i~ 374 (457)
T 1xm9_A 297 KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVMGNQVFP 374 (457)
T ss_dssp CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HHHHHHHHHhhhH
Confidence 788899999999999865332 11 1112 35789999999999999999999999999764 222 23456
Q ss_pred HHHHHhhcCCh------HHHHHHHHHHHHHHHhcChhHHHHhh-hhHHHHHHHhhcCC-ChHHHHHHHHHHHHHH
Q 000146 446 DVKTSVKNKVP------LVRSLTLNWVTFCIETSSKAAVLKVH-KDYVPICMECLNDG-TPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 446 ~l~~~L~~Knp------~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds-~~~VR~aA~~~l~~l~ 512 (2052)
.|+.-|.+.++ .+...++..|..++...+... .... ...++.|..++... +..||..|...|..++
T Consensus 375 ~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~-~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 375 EVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLA-KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHH-HHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 66666766543 567788888888776544321 1111 24778888999888 8999998888776443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.85 E-value=0.56 Score=63.48 Aligned_cols=256 Identities=17% Similarity=0.120 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChh--hHhhh----hhccHH
Q 000146 770 NPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD--IKGFL----ADVKPA 843 (2052)
Q Consensus 770 npKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~--l~~~L----~~lkP~ 843 (2052)
++.+|.+++..|.-+. .|.. -.++++.+... +.+.++.+|..|.-.+|-+|.-.|.. +...+ ++....
T Consensus 450 ~~~ir~gAaLGLGla~--~GS~---~eev~e~L~~~-L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~ 523 (963)
T 4ady_A 450 VDVLLHGASLGIGLAA--MGSA---NIEVYEALKEV-LYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGN 523 (963)
T ss_dssp HHHHHHHHHHHHHHHS--TTCC---CHHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHH
T ss_pred cHHHHHHHHHHHHHHh--cCCC---CHHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHH
Confidence 3778877777665543 2432 13567777776 77777888999999999988766632 22111 111111
Q ss_pred HHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhc-CCCChHHHHHHHHHHHHHHHh
Q 000146 844 LLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSL-ESPDWKVRLESIEAVNKILEE 922 (2052)
Q Consensus 844 ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l-~d~~Wk~R~eale~L~~ll~~ 922 (2052)
+...+---+..+- +.+.+ ..+.+++.+ .+.+|-.|..++-.+.-..
T Consensus 524 vrR~aalgLGll~---------------------------~g~~e----~~~~li~~L~~~~dp~vRygaa~alglAy-- 570 (963)
T 4ady_A 524 ITRGLAVGLALIN---------------------------YGRQE----LADDLITKMLASDESLLRYGGAFTIALAY-- 570 (963)
T ss_dssp HHHHHHHHHHHHT---------------------------TTCGG----GGHHHHHHHHHCSCHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHhhh---------------------------CCChH----HHHHHHHHHHhCCCHHHHHHHHHHHHHHh--
Confidence 1111100010000 00000 123444444 4678999998887765322
Q ss_pred ccccCCCCChhhHHHHH-HhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHh-CCCcHHHHHHHHHHHH
Q 000146 923 ANKRIQPAGTGELFGGL-RGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLD 1000 (2052)
Q Consensus 923 a~~~I~~~~~~eL~~aL-~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l-~D~k~~VR~aa~~aL~ 1000 (2052)
....+ ...++.| .....|.+..|++.|+..|+.++ +|.. ..++.++..| .+.++.||..+..+|+
T Consensus 571 ----aGTGn-~~aIq~LL~~~~~d~~d~VRraAViaLGlI~--~g~~------e~v~rlv~~L~~~~d~~VR~gAalALG 637 (963)
T 4ady_A 571 ----AGTGN-NSAVKRLLHVAVSDSNDDVRRAAVIALGFVL--LRDY------TTVPRIVQLLSKSHNAHVRCGTAFALG 637 (963)
T ss_dssp ----TTSCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--SSSC------SSHHHHTTTGGGCSCHHHHHHHHHHHH
T ss_pred ----cCCCC-HHHHHHHHHHhccCCcHHHHHHHHHHHHhhc--cCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11222 4455534 44457888899999988888765 3332 2245555543 4678999999999999
Q ss_pred HHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC--CchhhhHHHHHhhcCC--CCHHHHHHHHHHHH
Q 000146 1001 AWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTD--KSSDVRKAAEACIV 1076 (2052)
Q Consensus 1001 ~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D--~~~dVRkaA~~~L~ 1076 (2052)
.+....|...+++.|...+.+. +..+|+.++.-|..+....... +-+..++.-+.+.+.| .++.+|-.|+-+.+
T Consensus 638 li~aGn~~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqG 715 (963)
T 4ady_A 638 IACAGKGLQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQG 715 (963)
T ss_dssp HHTSSSCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred HhccCCCcHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 8877677778888777777665 6899999999998776654432 3566777777777766 45778988888877
Q ss_pred HHH
Q 000146 1077 EIL 1079 (2052)
Q Consensus 1077 ~l~ 1079 (2052)
-+.
T Consensus 716 ll~ 718 (963)
T 4ady_A 716 IMN 718 (963)
T ss_dssp HHT
T ss_pred HHh
Confidence 554
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.11 Score=63.47 Aligned_cols=189 Identities=15% Similarity=0.156 Sum_probs=130.9
Q ss_pred CCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHh-cCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHH
Q 000146 309 IDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLA-STKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQA 387 (2052)
Q Consensus 309 iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~-~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~ 387 (2052)
..||.-.+...|+...- .|-+ ...+-+.+++++..+..+. .+..+....-..++-.+.+++...|..+....--.
T Consensus 16 ~~p~~~~~k~~v~qe~r--~fn~--~~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLy 91 (355)
T 3tjz_B 16 SNPFQHLEKSAVLQEAR--VFNE--TPINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLT 91 (355)
T ss_dssp ----CCCCHHHHHHHGG--GTTS--SSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHH--HhcC--CCCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 34666566655554421 2321 1124445567888877655 34322222345778888889998888877777767
Q ss_pred HHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 000146 388 IGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVT 467 (2052)
Q Consensus 388 l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~ 467 (2052)
+..+++. ...+-.+...|.+=+.++++.+|..|..+|..+... .-++.+.+.+..++.|++|-||..++-...
T Consensus 92 l~~~~~~-----~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 92 IKEMSCI-----AEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQAIERYMKQAIVDKVPSVSSSALVSSL 164 (355)
T ss_dssp HHHHTTT-----SSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHhCCC-----HHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6666654 234558899999999999999998887777776542 447888889999999999999999998888
Q ss_pred HHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 000146 468 FCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAK 513 (2052)
Q Consensus 468 ~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~ 513 (2052)
+++...+. ..+.++..+..++.|+++.|--.|..++..+.+
T Consensus 165 kL~~~~pe-----~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 165 HLLKCSFD-----VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHTTTCHH-----HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHhccCHH-----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 87765432 236788899999999999998777666665543
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.068 Score=66.48 Aligned_cols=184 Identities=14% Similarity=0.151 Sum_probs=128.0
Q ss_pred ccHHHHhhcCCCChHHHHHHHHHHHHHHHhccc---cCCCCChhhHHH----HH-Hhhhcc-----chHHHHHHHHHHHH
Q 000146 893 FTPTLVKSLESPDWKVRLESIEAVNKILEEANK---RIQPAGTGELFG----GL-RGRLYD-----SNKNLVMATLITLG 959 (2052)
Q Consensus 893 i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~---~I~~~~~~eL~~----aL-~~rL~D-----sN~~V~~~Al~~l~ 959 (2052)
+...|...+-|.+|.+|-.|.-.|++++..... +....+ .++.- .| ..|++| .-.-|+.+|.++++
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N-~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVD-SKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCC-TTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceecccc-HHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 667888889999999999999999999985321 122222 14432 22 356766 23558888888888
Q ss_pred HHHHHhChhh---------------H---------Hh-------hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc
Q 000146 960 AVASAMGPAV---------------E---------KS-------SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 960 ~la~alg~~~---------------~---------~~-------~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l 1008 (2052)
.+ ..|...+ + +| ...+++.++..|+|....||..|..+|--++..-.+
T Consensus 254 aL-~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l 332 (800)
T 3oc3_A 254 RI-YPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSL 332 (800)
T ss_dssp HH-TTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTH
T ss_pred HH-HhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhH
Confidence 87 5554221 1 11 366788999999999999999999999988833347
Q ss_pred hhhHHHHHHHHhcC-ccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1009 DKMVPYVTTALTDA-KLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1009 ~~ll~~l~~~L~~~-k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
+.++..++..|.+- ..+ ..-..++..|+..+..-........+++-++..+.++-.+||+++..++.+|.
T Consensus 333 ~~LL~iLWd~L~~LDDLS-ASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 333 DLVLEKCWKNIESEELIS-VSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHHHHTCCSCC-TTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhhhhcccc-hhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 78888899998742 122 23456666666554432221122356666999999999999999999987766
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.013 Score=60.90 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=63.8
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+.|+..+.|.+|.+|..|+..|..+- ..+.+..|...|.|.+..|+..|+..|+.+. -.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~-----------~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~ 103 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GE 103 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGC-----------SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cH
Confidence 56777788888888888888875432 1456777777788888888888888888664 13
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000146 975 GVLSDILKCLGDNKKHMRECTLTVLD 1000 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~~VR~aa~~aL~ 1000 (2052)
..++.++..+.|..+.||.+|..+|.
T Consensus 104 ~a~~~L~~~l~d~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 104 RVRAAMEKLAETGTGFARKVAVNYLE 129 (131)
T ss_dssp HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45777888888888888888877765
|
| >1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.4 Score=66.31 Aligned_cols=396 Identities=10% Similarity=0.044 Sum_probs=212.3
Q ss_pred chhHHHHHhccCcHHHHHHHHHHHHHHHHHhhh-hhh--hhhHHHHHHHHHhhcC-C-ChhHHHHHHHHHHHHHhhh---
Q 000146 92 LGPLFKKTVADSNAPVQDKALDALIAYLKAADA-DAG--RYAKEVCDAIAAKCLT-G-RPKTVEKAQAVFMLWVELE--- 163 (2052)
Q Consensus 92 ~~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~-~~~--~~~~~vi~~LieK~L~-~-r~~tk~~A~~~~l~~~e~~--- 163 (2052)
+.+.+...+.|+.-.-|-.|.|++..++..... .+. ...-.++..++.++|. + .+.+..-=..|+-.....-
T Consensus 509 l~~~~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~Dpr 588 (997)
T 1vsy_5 509 LFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLR 588 (997)
T ss_dssp HHHHHHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChh
Confidence 466777788999999999999999998865432 111 2244678888899997 3 6666653222222222222
Q ss_pred hhhhHHHHHHHH-----hhccChhhHHHHHHHHHHHHHHhCCCCcChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhh
Q 000146 164 AVDVFLDVMEKA-----IKNKVAKAVVPAIDVMFQALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWI 238 (2052)
Q Consensus 164 ~~~~v~e~Ll~~-----l~~K~PKvv~~~l~~L~~~l~~FG~~~i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~l 238 (2052)
....+++.|... ...-..=..+.-+..|..++.+.|-+.-..+.++..+. +.|+.++||++.-.++..++...
T Consensus 589 R~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~ 666 (997)
T 1vsy_5 589 RSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQ 666 (997)
T ss_dssp GCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTS
T ss_pred hhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhh
Confidence 234566655221 11112224445678888999998886555778887777 99999999999999999888765
Q ss_pred C-Cc--hhhHHHH---h-----hC-----hHHHHHHHHHHHHhcc---CC---CCCCccchhhhhHhhhhccc---ccCC
Q 000146 239 G-KD--PVKTILF---E-----KM-----RDTMKKELEVELVNVS---GT---ARPTRKIRAEQDKELGQELI---SEDV 293 (2052)
Q Consensus 239 G-~~--~l~~~L~---~-----~L-----kp~qlkeLe~~f~~~~---~~---~~p~R~~rs~~~~~~~~~~~---~~~~ 293 (2052)
- +. -++..+- . .+ .+....-+.+.|++++ +. ..|.-..++....-. .+.. ....
T Consensus 667 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~-kTvl~wl~~~l 745 (997)
T 1vsy_5 667 SNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRT-STIFYWIKEMA 745 (997)
T ss_dssp CCCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHH-HHHHHHHHHHS
T ss_pred cccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHH-HHHHHHHHHHh
Confidence 1 10 0111110 0 00 0111111223333221 00 000000000000000 0000 0000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHH-----HHHhcCCCCCCCChHHHHHH
Q 000146 294 GPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAEL-----TKLASTKRIAPGDFTEVCRT 368 (2052)
Q Consensus 294 ~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L-----~~L~~~~ki~~~dy~~l~~~ 368 (2052)
+. ....--.++++.. ++ | .+......+ +..| |..+ ...++.--+.+.....++.+
T Consensus 746 ~~----------~~~~~l~~~~~~~-ll---P--~ll~l~~~~---d~~e-L~~~~a~~~l~~ls~~~~~~~~~~~~l~~ 805 (997)
T 1vsy_5 746 RG----------PNKVLLVPYLVDY-VL---P--FLIGLVKHK---DVCA-LASLDPVRLYAGLGYMPIRKNHVAAIVDY 805 (997)
T ss_dssp SG----------GGHHHHHHHHTTT-TT---T--TTCTTSSCS---HHHH-HTTCCSHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred cC----------CCccchhhhhHHH-HH---H--HHHHHhhcC---cHHH-HHhhHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 00 0000000000000 22 1 122222222 1111 2222 22222211222334457777
Q ss_pred HHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcc--h-hhhhhHHHHHHHHhccCc-HHHHHHHHHHHHHHHHhcCC-CHHH
Q 000146 369 LKKLIT-DVNIAVAVEAIQAIGNLARGLRTHF--S-GSSRFLLPVLLEKLKEKK-PTVAESLTQTLQAMHKAGCL-NLVD 442 (2052)
Q Consensus 369 L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f--~-~~~~~llp~LL~klkdkK-~~V~~aa~~aL~ai~~~~~~-~l~~ 442 (2052)
|..... +.+= ++..++..++.+.- +.-| . .....++-.++..+.|+. ..||+.|..+|-.++. |. ....
T Consensus 806 l~~~~~~s~sW-~R~~~L~~lq~~~f--~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~--c~~~~~~ 880 (997)
T 1vsy_5 806 VCSSNVALSSN-QTKLQLAFIQHFLS--AELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVH--NWKEEQP 880 (997)
T ss_dssp SSCTTTTSCSS-SHHHHHHHHHHHHH--HHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHH--SCCSHHH
T ss_pred HHHHHhcCCcH-HHHHHHHHHHHHHH--HHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH--cCCchhh
Confidence 766666 4555 66666666665543 2222 1 234567888888899999 9999999999999986 65 4333
Q ss_pred HHHHHHHHhhcCC----------------hHHHHHHHHHHHHHHHhcChhH-HHHhhhhHHHHHHHhhcCCChHHHHHHH
Q 000146 443 VVEDVKTSVKNKV----------------PLVRSLTLNWVTFCIETSSKAA-VLKVHKDYVPICMECLNDGTPEVRDAAF 505 (2052)
Q Consensus 443 ll~~l~~~L~~Kn----------------p~vR~~~l~~L~~~l~~~~~~~-l~~~l~~l~p~l~k~l~Ds~~~VR~aA~ 505 (2052)
+. ++...+..+- -..|-++..-|..++...|-.. ..+.++.++..|...++|+.+ |+..+.
T Consensus 881 ~~-~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk 958 (997)
T 1vsy_5 881 LL-SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAK 958 (997)
T ss_dssp HH-HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTH
T ss_pred HH-HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHH
Confidence 33 3333332221 1456677777888887765432 245678888888888899766 999999
Q ss_pred HHHHHHHHHhCC
Q 000146 506 SVLAAIAKSVGM 517 (2052)
Q Consensus 506 ~~l~~l~~~~Ge 517 (2052)
++++.|.+.--+
T Consensus 959 ~tlseFkrTH~D 970 (997)
T 1vsy_5 959 NTISEFKKVRAD 970 (997)
T ss_dssp HHHHHHHHHTST
T ss_pred HHHHHHHhccch
Confidence 999999877553
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.15 E-value=8.5 Score=51.20 Aligned_cols=288 Identities=11% Similarity=0.090 Sum_probs=155.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHH
Q 000146 769 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 848 (2052)
Q Consensus 769 KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~L 848 (2052)
++..++.-++-.|+++-..-+.....+..+.+.+.+. |.+.+...|.-|++.|.++ ...+.++..|..-. ..++.|
T Consensus 306 ~~~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~-L~~~~~~~~~~AvEgLaYL--Sl~~~VKe~L~~d~-~~L~~L 381 (778)
T 3opb_A 306 NVEDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINA-ISRRIVPKVEMSVEALAYL--SLKASVKIMIRSNE-SFTEIL 381 (778)
T ss_dssp TSGGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHH--TTSSHHHHHHHHCH-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH-HhcCCccHHHHHHHHHHHH--hCCHHHHHHHHhCH-HHHHHH
Confidence 4556777677777666543344456778899999887 8887777788888887655 56778887774332 223333
Q ss_pred HHHHhcCCCCCCCC-Cc-c----ccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHH-HHHHHH
Q 000146 849 DAEYEKNPFEGTVV-PK-K----TVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEA-VNKILE 921 (2052)
Q Consensus 849 e~efeK~~~~~~p~-p~-r----~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~-L~~ll~ 921 (2052)
-+-+.. ....... .. . -................+..-.+. ..| + ..-.+..+ ...+.+.. -.+.+.
T Consensus 382 v~llk~-~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~--~~p-~--~~~~d~~~-~~~~~v~~~~~~~l~ 454 (778)
T 3opb_A 382 LTMIKS-QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXX--XXP-A--ADKVGAEK-AAKEDILLFNEKYIL 454 (778)
T ss_dssp HHHHTT-TCCTTHHHHHHHHHHHTTCCCCCCCCCCC-----------------------CCTHH-HHHHHHHHHHHHHTT
T ss_pred HHHHhC-CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccc--cCc-c--cCcccccc-cchHHHHHHHHHHHH
Confidence 333321 1100000 00 0 000000000000000000000000 000 0 00011112 22222222 222221
Q ss_pred hccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh-h-hHHHHHHHHHhCCCcHH---HHHHHH
Q 000146 922 EANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-S-KGVLSDILKCLGDNKKH---MRECTL 996 (2052)
Q Consensus 922 ~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~-~-~~llp~ll~~l~D~k~~---VR~aa~ 996 (2052)
. ..+++.|...++..+..++..|+.+|..|+.. +..+.. + ...++.++..+.+.... +|..|.
T Consensus 455 -------e---aGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d--~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA 522 (778)
T 3opb_A 455 -------R---TELISFLKREMHNLSPNCKQQVVRIIYNITRS--KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGC 522 (778)
T ss_dssp -------T---TTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS--GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHH
T ss_pred -------H---CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHH
Confidence 1 34888999999888999999999999999744 333222 2 35789999999887655 788888
Q ss_pred HHHHHHHHhcCch---------hhHHHHHHHHhc-Ccc-----------ChhHHHHHHHHHHHHhccCCCC--Cc-----
Q 000146 997 TVLDAWLAAVHLD---------KMVPYVTTALTD-AKL-----------GAEGRKDLFDWLSKQLTGLSGF--PD----- 1048 (2052)
Q Consensus 997 ~aL~~i~~~~~l~---------~ll~~l~~~L~~-~k~-----------np~~R~~~l~~L~~~l~~~~~~--~~----- 1048 (2052)
.+|-.+....... ..++.+...|.. ... +...+.+++..|..... .+.. .+
T Consensus 523 ~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs-~~~n~~E~~r~~I 601 (778)
T 3opb_A 523 RALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLAS-SETSDGEEVCKHI 601 (778)
T ss_dssp HHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHH-CCSHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhc-CCcccchHHHHHH
Confidence 9998888655321 345667777652 110 00236788877775443 3210 01
Q ss_pred hh--hhHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000146 1049 AA--HLLKPASIAMTDKSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1049 ~~--~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~ 1080 (2052)
+. ..++.|...|.+.+..||++|.+++.-++.
T Consensus 602 i~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 602 VSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp HHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 12 134457778888899999999999999986
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.24 Score=60.68 Aligned_cols=188 Identities=9% Similarity=0.003 Sum_probs=128.9
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCC-CC--hHHHHHHHHHHh-cCcCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GD--FTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 402 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~-~d--y~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 402 (2052)
.+...+.+.+=..+..|.-.|..|+....-.. .. -...++.|.+.+ ...+..+...|+.+|..|+..-...-...
T Consensus 131 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~ 210 (354)
T 3nmw_A 131 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 210 (354)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHH
Confidence 46666777778888899999988874311000 00 112455666654 45677889999999999987332211122
Q ss_pred -hhhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCCH------HHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000146 403 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 469 (2052)
Q Consensus 403 -~~~llp~LL~klkdkK~----~V~~aa~~aL~ai~~~--~~~~l------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~ 469 (2052)
....+|.|++.+...+. .|++.+..+|.++..+ .+... ...++.|...|++.+..++.+++..|..+
T Consensus 211 ~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 211 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 290 (354)
T ss_dssp HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24689999999987654 4888888899888752 01111 12567788888999999999999999887
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 470 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 470 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
.... ........ .-.+|.|+.++.+.++.+|+.|..+|..+...-+
T Consensus 291 a~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 291 SARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp TSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred hCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 5332 22222222 3478999999999999999999999998886544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.60 E-value=3.1 Score=56.50 Aligned_cols=158 Identities=14% Similarity=0.166 Sum_probs=96.2
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc---CcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHH
Q 000146 335 ATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT---DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLL 411 (2052)
Q Consensus 335 s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~---D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL 411 (2052)
.++|. |..|+-.|.-+- .++..+.+..|.+.+. ..+..+...|+-.||.+..|.+.. .+..|.
T Consensus 370 ~~~~~-k~sA~aSLGlIh------~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~-------~~~lL~ 435 (963)
T 4ady_A 370 AQNWA-KFTATASLGVIH------KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRD-------TTDYLK 435 (963)
T ss_dssp CCTHH-HHHHHHHHHHHT------SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHH-------HHHHHH
T ss_pred cchHH-HHHHHHHhhhhc------cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHH-------HHHHHH
Confidence 35564 344544444332 2233445777777776 457788999999999998877642 334444
Q ss_pred HHhccCc--------HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh
Q 000146 412 EKLKEKK--------PTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK 483 (2052)
Q Consensus 412 ~klkdkK--------~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~ 483 (2052)
+.+.+.+ ..|+-.+.-+|--++.. +.=+++++.|...+.+.++.++..+..-|+.++-....... +.
T Consensus 436 ~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G--S~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---i~ 510 (963)
T 4ady_A 436 NIIVENSGTSGDEDVDVLLHGASLGIGLAAMG--SANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---IH 510 (963)
T ss_dssp HHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---HH
T ss_pred HHHcCccccccccccHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---HH
Confidence 4444433 56666666666655432 33467888888888877777777777777766543322211 13
Q ss_pred hHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 484 DYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 484 ~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
.|+.. +++|.+..||..+..+|+.++ +|
T Consensus 511 ~LL~~---~~e~~~e~vrR~aalgLGll~--~g 538 (963)
T 4ady_A 511 DMFTY---SQETQHGNITRGLAVGLALIN--YG 538 (963)
T ss_dssp HHHHH---HHHCSCHHHHHHHHHHHHHHT--TT
T ss_pred HHHHH---HhccCcHHHHHHHHHHHHhhh--CC
Confidence 33332 345677788888888887663 45
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.62 Score=49.47 Aligned_cols=111 Identities=14% Similarity=0.229 Sum_probs=82.5
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+.+.||.. +-.|-+++... +..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 14 l~~~dw~~----~leicD~I~~~-----~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~ 84 (148)
T 1mhq_A 14 MSEQDWSA----IQNFCEQVNTD-----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (148)
T ss_dssp CSSCCHHH----HHHHHHHHHHS-----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 45678964 44555555421 222478999999999999999999999999999999999996543 66888
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000146 979 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 1020 (2052)
Q Consensus 979 ~ll~~l~D------~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~ 1020 (2052)
.+...+.+ ....|++-+...+..|....+-+.-+..+...|.
T Consensus 85 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~i~~~y~~Lk 132 (148)
T 1mhq_A 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPEDIKIRDAYQMLK 132 (148)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 88877764 3678999999999999998753332333333343
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=93.67 E-value=2.7 Score=54.46 Aligned_cols=310 Identities=15% Similarity=0.179 Sum_probs=175.4
Q ss_pred hhhHHHHHHHHHHhhhchh---hhHHHHHHHHHHHhhhChhHH---HHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHhCC
Q 000146 718 KKCVVLCLLGISERVADIK---TRAHAMKCLTTFSEAVGPGFI---FERLYKIMKD-HKNPKVLSEGILWMVSAVEDFGV 790 (2052)
Q Consensus 718 ~~~~~~il~~LveKlgd~K---~r~~a~e~L~~l~E~~~~~~V---l~~L~~~l~~-~KnpKv~~e~L~~L~~~i~~fG~ 790 (2052)
++.+...++.|++++.+.- -|-.|...|..++..+..... +..++..+.+ ..+..+...+|+.|..++..-+.
T Consensus 16 ~qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp --CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred CCChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 4567888899999987754 367777778887776554322 4455555533 36777777778777666532111
Q ss_pred C-----------CC---------ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHH
Q 000146 791 S-----------HL---------KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDA 850 (2052)
Q Consensus 791 ~-----------~l---------~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~ 850 (2052)
. .+ .-.+-+..+..+ |+..+-.||-.+++++..|-..-+......+ -.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~l-L~~~df~vR~~alqlL~~L~~~r~~~~Q~~I-----------l~ 163 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSL-LEEFDFHVRWPGVKLLTSLLKQLGPQVQQII-----------LV 163 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHH-TTCCCHHHHHHHHHHHHHHHHHSHHHHHHHH-----------HH
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHH-hcCccHHHHHHHHHHHHHHHhcCcHHHHHHH-----------Hh
Confidence 0 00 002335556667 8999999999999999988866443332221 11
Q ss_pred HHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCC
Q 000146 851 EYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA 930 (2052)
Q Consensus 851 efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~ 930 (2052)
.+. =.+.|+..++|+.-.+|.||+-.|..+... |..|+.-
T Consensus 164 ----~p~-----------------------------------gi~~Lv~lL~d~rE~iRneallLL~~Lt~~-n~~iQkl 203 (651)
T 3grl_A 164 ----SPM-----------------------------------GVSRLMDLLADSREVIRNDGVLLLQALTRS-NGAIQKI 203 (651)
T ss_dssp ----STT-----------------------------------HHHHHHGGGGCSSHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred ----Ccc-----------------------------------cHHHHHHHHhCchHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence 100 013577888899999999999999888864 4555431
Q ss_pred -ChhhHHHHHHhhhccc----hHHHHHHHHHHHHHHHHHhChhhHHhhh--HHHHHHHHHhCCCcH-------HHHH--H
Q 000146 931 -GTGELFGGLRGRLYDS----NKNLVMATLITLGAVASAMGPAVEKSSK--GVLSDILKCLGDNKK-------HMRE--C 994 (2052)
Q Consensus 931 -~~~eL~~aL~~rL~Ds----N~~V~~~Al~~l~~la~alg~~~~~~~~--~llp~ll~~l~D~k~-------~VR~--a 994 (2052)
-|...+..|...+.+- ...|+.-++.++..|...-..+ ..|.+ .++|.+...|..... .++. .
T Consensus 204 VAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sN-Q~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~ 282 (651)
T 3grl_A 204 VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSN-QNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHL 282 (651)
T ss_dssp HHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHH-HHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHH
Confidence 1333444444444332 3467788888888887552111 11111 133444443332111 1111 2
Q ss_pred HHHHHHHHHHhcCc-------------hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC------------Cch
Q 000146 995 TLTVLDAWLAAVHL-------------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF------------PDA 1049 (2052)
Q Consensus 995 a~~aL~~i~~~~~l-------------~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~------------~~~ 1049 (2052)
+..++..++...+. ..+++.+...+-.......+|.+++..++..+...+.. +..
T Consensus 283 ~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~ 362 (651)
T 3grl_A 283 MLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPR 362 (651)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCE
T ss_pred HHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCc
Confidence 33333333322110 11344555666554445678999998888877654321 011
Q ss_pred hhhHHHHHhhcCCC-CHHHHHHHHHHHHHHHH
Q 000146 1050 AHLLKPASIAMTDK-SSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1050 ~~ll~pl~~~L~D~-~~dVRkaA~~~L~~l~~ 1080 (2052)
..++..+...+.+. .-++|-+|..|+..+..
T Consensus 363 p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~ 394 (651)
T 3grl_A 363 PAIVVLLMSMVNERQPFVLRCAVLYCFQCFLY 394 (651)
T ss_dssp EHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHhcccccHHHHHHHHHHHHHHHh
Confidence 12233344446555 46999999999987763
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.42 Score=58.54 Aligned_cols=172 Identities=11% Similarity=0.066 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhcCCC-CCC--CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHHHHHh
Q 000146 340 ERKDAVAELTKLASTKR-IAP--GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVLLEKL 414 (2052)
Q Consensus 340 eR~eaL~~L~~L~~~~k-i~~--~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~LL~kl 414 (2052)
-|.+|...|..|+.... ... ..++.+++.|...+...+..|...|+.+|..|+.+-....... -...+|.|++.+
T Consensus 100 ~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL 179 (354)
T 3nmw_A 100 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 179 (354)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHH
Confidence 47788888888874211 100 1135568888888988889999999999999986411111111 124688999875
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC----H---HHHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000146 415 -KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 480 (2052)
Q Consensus 415 -kdkK~~V~~aa~~aL~ai~~~~~~~----l---~~ll~~l~~~L~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 480 (2052)
+.....+++.+..+|.++..+ +.. + ...++.|...|.+.++ .++..++..|..+-.. ........
T Consensus 180 ~~~~~~~~~~~A~~aL~nLs~~-~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 258 (354)
T 3nmw_A 180 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258 (354)
T ss_dssp HHCCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcc-ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHH
Confidence 556778888888888888753 211 1 2356667777776654 4888887777665431 12222112
Q ss_pred hh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 481 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 481 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
.. ...+|.|+.+|.+.+.+|++.|..+|+.+.
T Consensus 259 i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 259 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291 (354)
T ss_dssp HHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 22 237899999999999999999998888775
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.44 E-value=7.5 Score=45.04 Aligned_cols=128 Identities=13% Similarity=0.175 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc
Q 000146 339 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 418 (2052)
Q Consensus 339 keR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK 418 (2052)
.+|.+.|.+++.++-.. .+.-|.++++.+.....|.+..|+...+..|+..+.. + ..++..+++.|...+.|..
T Consensus 30 ~~kl~~L~qa~el~~~~--dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k-~~l~~~~l~~L~~Ll~d~d 103 (257)
T 3gs3_A 30 STKCELLAKVQETVLGS--CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV---K-VELLPHVINVVSMLLRDNS 103 (257)
T ss_dssp HHHHHHHHHHHHHHTTT--TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHcc--CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 68999999999976321 2346889999999877799999999988888887732 2 3478889999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----cC--CC-----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000146 419 PTVAESLTQTLQAMHKA----GC--LN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 472 (2052)
Q Consensus 419 ~~V~~aa~~aL~ai~~~----~~--~~-----------l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~ 472 (2052)
+.|...+..|...++.. -| .+ +..+-..|+.-+.+.|..+|..|++|+.+++..
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~ 174 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVL 174 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHh
Confidence 99998888888888765 12 11 122334455566788999999999999998853
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.53 Score=59.63 Aligned_cols=172 Identities=11% Similarity=0.064 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhcCCCCCC---CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhh--hhHHHHHHHHh
Q 000146 340 ERKDAVAELTKLASTKRIAP---GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSS--RFLLPVLLEKL 414 (2052)
Q Consensus 340 eR~eaL~~L~~L~~~~ki~~---~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~--~~llp~LL~kl 414 (2052)
-+.+|...|..|+....-.. ..++..++.|...|...+..|...|+.+|..|+.+-.......+ ...+|.|++.+
T Consensus 216 l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lL 295 (458)
T 3nmz_A 216 LRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECA 295 (458)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHH
Confidence 36778888888874321000 11355678888889888899999999999999863111111111 25689999975
Q ss_pred -ccCcHHHHHHHHHHHHHHHHhcCCC----H---HHHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHh--cChhHHHH
Q 000146 415 -KEKKPTVAESLTQTLQAMHKAGCLN----L---VDVVEDVKTSVKNKVP----LVRSLTLNWVTFCIET--SSKAAVLK 480 (2052)
Q Consensus 415 -kdkK~~V~~aa~~aL~ai~~~~~~~----l---~~ll~~l~~~L~~Knp----~vR~~~l~~L~~~l~~--~~~~~l~~ 480 (2052)
......+++.+..+|.++..+ |.. + ...++.|...|.+... .++..++..|..+-.. ........
T Consensus 296 l~s~~~~v~~~A~~aL~nLs~~-~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~ 374 (458)
T 3nmz_A 296 LEVKKESTLKSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374 (458)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHH-CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHccC-CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 446788899888999888874 211 1 2356667777776543 4888888777765431 22222212
Q ss_pred hh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 481 VH-KDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 481 ~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
.. ...+|.|+.+|.+.+.+|++.|..+|+.+.
T Consensus 375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 22 347899999999999999999998888775
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.68 Score=58.63 Aligned_cols=187 Identities=9% Similarity=0.006 Sum_probs=127.5
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCC-C--ChHHHHHHHHHHh-cCcCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-G--DFTEVCRTLKKLI-TDVNIAVAVEAIQAIGNLARGLRTHFSGS- 402 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~-~--dy~~l~~~L~k~l-~D~N~~V~~~A~~~l~~La~~L~~~f~~~- 402 (2052)
.+...+.+.+=..+..|.-.|..|+....-.. . .-...++.|.+.+ ...+..+...|+.+|..|+..-...-...
T Consensus 247 ~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~ 326 (458)
T 3nmz_A 247 ALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC 326 (458)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 45666777777788888888888864210000 0 0112455666764 45678889999999999998432211122
Q ss_pred -hhhHHHHHHHHhccCcH----HHHHHHHHHHHHHHHh--cCCCH------HHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 000146 403 -SRFLLPVLLEKLKEKKP----TVAESLTQTLQAMHKA--GCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFC 469 (2052)
Q Consensus 403 -~~~llp~LL~klkdkK~----~V~~aa~~aL~ai~~~--~~~~l------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~ 469 (2052)
....+|.|++.+...+. .|++.+..+|.++..+ .+... ...++.|...|++.+..++.+++..|..+
T Consensus 327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL 406 (458)
T ss_dssp HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 24689999999987654 4888888899888752 01111 12467778888899999999999999987
Q ss_pred HHhcChhHHHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHh
Q 000146 470 IETSSKAAVLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 470 l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~ 515 (2052)
.... +....... .-.+|.|+.+|...++.+|+.|..+|..|...-
T Consensus 407 a~~~-~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 407 SARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HSSC-HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HcCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 5332 22222222 347899999999999999999999998887543
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=93.04 E-value=0.41 Score=50.42 Aligned_cols=100 Identities=17% Similarity=0.305 Sum_probs=76.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+.+.||.. +-.|.+++.. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 18 l~~~dw~~----ileicD~I~~-----~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~ 88 (140)
T 3ldz_A 18 NTAEDWGL----ILDICDKVGQ-----SRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFAS 88 (140)
T ss_dssp SSSCCHHH----HHHHHHHHTT-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHC-----CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 45678963 4445455531 2333478999999999999999999999999999999999987543 55666
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCch
Q 000146 979 DILKCLGDNKKHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 979 ~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
.+...+....+.|++-+...+..|....+-+
T Consensus 89 el~~l~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (140)
T 3ldz_A 89 EVSNVLNKGHPKVCEKLKALMVEWTDEFKND 119 (140)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 6666665677899999999999999877533
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=92.75 E-value=0.75 Score=49.69 Aligned_cols=99 Identities=13% Similarity=0.292 Sum_probs=75.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+.+.||.. +-.|.+++.. .+..-.+.+.+|++||+..|.+++..||.++..+++.+|..|...+ +.|+-
T Consensus 28 ~~~~Dw~~----~leicD~I~~-----~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~ 98 (163)
T 1x5b_A 28 NTTEDWSL----IMDICDKVGS-----TPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFAT 98 (163)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 34568964 3345555542 1233478999999999999999999999999999999999987433 34666
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000146 979 DILKCLGD-NKKHMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 979 ~ll~~l~D-~k~~VR~aa~~aL~~i~~~~~l 1008 (2052)
.++..+.. ..+.|++-+...+..|....+-
T Consensus 99 el~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 129 (163)
T 1x5b_A 99 EVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK 129 (163)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 66655544 5578999999999999998763
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.048 Score=63.12 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=69.7
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHH
Q 000146 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLS 978 (2052)
Q Consensus 899 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp 978 (2052)
..+.|.+|.+|..+...+ . .+ .|...++|.+..|+..++.. ++. +
T Consensus 129 ~L~~D~d~~VR~~aA~~l-----------~----~~---~l~~l~~D~d~~VR~~aa~~-------l~~----------~ 173 (244)
T 1lrv_A 129 QMAADRDYLVRAYVVQRI-----------P----PG---RLFRFMRDEDRQVRKLVAKR-------LPE----------E 173 (244)
T ss_dssp GGTTCSSHHHHHHHHHHS-----------C----GG---GGGGTTTCSCHHHHHHHHHH-------SCG----------G
T ss_pred HHHcCCCHHHHHHHHHhc-----------C----HH---HHHHHHcCCCHHHHHHHHHc-------CCH----------H
Confidence 345778888888877632 1 11 23455678888888777663 221 2
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHh
Q 000146 979 DILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI 1058 (2052)
Q Consensus 979 ~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~ 1058 (2052)
.+...++|....||.++...+ +. +.+...+.++ ++.+|..+...+. .+.+.
T Consensus 174 ll~~ll~D~d~~VR~aaa~~l-------~~----~~L~~Ll~D~--d~~VR~~aa~~l~----------------~~~L~ 224 (244)
T 1lrv_A 174 SLGLMTQDPEPEVRRIVASRL-------RG----DDLLELLHDP--DWTVRLAAVEHAS----------------LEALR 224 (244)
T ss_dssp GGGGSTTCSSHHHHHHHHHHC-------CG----GGGGGGGGCS--SHHHHHHHHHHSC----------------HHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhC-------CH----HHHHHHHcCC--CHHHHHHHHHcCC----------------HHHHH
Confidence 233566888888888877642 22 2344445655 5788888776631 13334
Q ss_pred hcCCCCHHHHHHHHHHH
Q 000146 1059 AMTDKSSDVRKAAEACI 1075 (2052)
Q Consensus 1059 ~L~D~~~dVRkaA~~~L 1075 (2052)
.|.|.++.||.+|...|
T Consensus 225 ~L~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 225 ELDEPDPEVRLAIAGRL 241 (244)
T ss_dssp HCCCCCHHHHHHHHCCC
T ss_pred HccCCCHHHHHHHHHHh
Confidence 45888888888887654
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=92.46 E-value=0.54 Score=59.69 Aligned_cols=180 Identities=12% Similarity=0.019 Sum_probs=116.7
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcC-CCCCCC-ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--h
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLAST-KRIAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--S 403 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~-~ki~~~-dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~ 403 (2052)
.+...+.+.++..+..|+..|..++.. +..... --...++.|.+.+.+.+..+...|+.+|..|+.+- ...... -
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i~~ 84 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLETRR 84 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHH
Confidence 466778889999999999999998742 211100 01234677888888889999999999999999741 111111 2
Q ss_pred hhHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHhh--------cC--------ChHHHHH
Q 000146 404 RFLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNLV-----DVVEDVKTSVK--------NK--------VPLVRSL 461 (2052)
Q Consensus 404 ~~llp~LL~klk-dkK~~V~~aa~~aL~ai~~~~~~~l~-----~ll~~l~~~L~--------~K--------np~vR~~ 461 (2052)
...+|.|++.++ ...+.+++.+..+|..+... .... ..++.|...+. +. .+.+...
T Consensus 85 ~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~--~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~ 162 (457)
T 1xm9_A 85 QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN 162 (457)
T ss_dssp TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS--SSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC--HHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence 356899999998 67889999999999999864 2322 35566666662 22 2344457
Q ss_pred HHHHHHHHHHhcChhHHHHhhh--hHHHHHHHhhcC------CChHHHHHHHHHHHHHH
Q 000146 462 TLNWVTFCIETSSKAAVLKVHK--DYVPICMECLND------GTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 462 ~l~~L~~~l~~~~~~~l~~~l~--~l~p~l~k~l~D------s~~~VR~aA~~~l~~l~ 512 (2052)
++..|..+.. . +.......+ -++|.|+.+|.+ .+..+.+.|..++..+.
T Consensus 163 a~~aL~nLs~-~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs 219 (457)
T 1xm9_A 163 ATGCLRNLSS-A-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLS 219 (457)
T ss_dssp HHHHHHHHTT-S-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcc-C-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcc
Confidence 7777666543 2 222222222 567777777753 45556666666665553
|
| >1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=1.1 Score=48.77 Aligned_cols=111 Identities=14% Similarity=0.210 Sum_probs=82.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+.+.||.. +-.|.+++... +..-.+.+.+|++||+..|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 26 l~~~Dw~~----ileicD~I~~~-----~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~ 96 (171)
T 1juq_A 26 NRQEDWEY----IIGFCDQINKE-----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 96 (171)
T ss_dssp CSSCCHHH----HHHHHHHHHHS-----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHcC-----CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 34568954 44555555431 22347899999999999999999999999999999999998754 355777
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Q 000146 979 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT 1020 (2052)
Q Consensus 979 ~ll~~l~D------~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~ 1020 (2052)
.++..+.. ....|++-+.+.+..|....+-..-+..+...|+
T Consensus 97 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~~~i~~~y~~Lk 144 (171)
T 1juq_A 97 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLK 144 (171)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 77777753 3578999999999999998764333333333343
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=0.98 Score=47.98 Aligned_cols=100 Identities=16% Similarity=0.260 Sum_probs=77.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+.+.||. ++-.|.+++.. .+..-.+.+.+|++||...|.+++..||.++..+++.+|..|... .+.|+.
T Consensus 24 l~~~dw~----~ileicD~I~~-----~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~ 94 (149)
T 3g2s_A 24 NKELDWA----SINGFCEQLNE-----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 94 (149)
T ss_dssp CSSCCHH----HHHHHHHHGGG-----SSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHC-----CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHH
Confidence 3556896 34444444432 233347899999999999999999999999999999999998643 456788
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCch
Q 000146 979 DILKCLGD------NKKHMRECTLTVLDAWLAAVHLD 1009 (2052)
Q Consensus 979 ~ll~~l~D------~k~~VR~aa~~aL~~i~~~~~l~ 1009 (2052)
.+++.+.+ ....|++-+...+..|....+-+
T Consensus 95 eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~ 131 (149)
T 3g2s_A 95 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPEE 131 (149)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 88888865 46789999999999999987543
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=91.09 E-value=51 Score=43.73 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=57.3
Q ss_pred HhhhcCCChhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchh
Q 000146 8 LKEAKKLPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYS 87 (2052)
Q Consensus 8 ~~~~~~lpl~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 87 (2052)
+.+=.=+|+-++|.|.+.+.|..|-.-|..+.+ ++..+... ...
T Consensus 31 ~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~------~~~~~~l~-----~~~------------------------- 74 (684)
T 4gmo_A 31 LREDKILPVLKDLKSPDAKSRTTAAGAIANIVQ------DAKCRKLL-----LRE------------------------- 74 (684)
T ss_dssp HHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT------SHHHHHHH-----HHT-------------------------
T ss_pred cchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc------CcHHHHHH-----HHc-------------------------
Confidence 344456899999999999999999999998874 23333220 000
Q ss_pred hhhhchhHHHHHhccCcHHHHHHHHHHHHHHHHHhhh
Q 000146 88 FVLMLGPLFKKTVADSNAPVQDKALDALIAYLKAADA 124 (2052)
Q Consensus 88 ~~~~~~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~ 124 (2052)
..+..++...+.|+|..+++.|..+|..+....+.
T Consensus 75 --~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 75 --QVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp --THHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred --CCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence 01256677889999999999999999887765444
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=90.27 E-value=11 Score=46.24 Aligned_cols=128 Identities=15% Similarity=0.124 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCc
Q 000146 339 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKK 418 (2052)
Q Consensus 339 keR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK 418 (2052)
.+|.+.|.++..|+-.. .+.-|.++++.+.....|.+..|+...+..|+..+.. . ..++..+++.|...+.|..
T Consensus 40 ~~Kl~~L~q~~EL~l~~--dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d~d 113 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK--DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRDEN 113 (386)
T ss_dssp THHHHHHHHHHHHHHTT--CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcCCC
Confidence 58999999999975221 2245778888888877899999999999999888752 2 2357888999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----c--CCC-----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q 000146 419 PTVAESLTQTLQAMHKA----G--CLN-----------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIET 472 (2052)
Q Consensus 419 ~~V~~aa~~aL~ai~~~----~--~~~-----------l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~ 472 (2052)
+.|...+..|...++.. - +.. +..+-..|+..+.+.|..+|..|+.|+.+++-.
T Consensus 114 ~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~ 184 (386)
T 3o2t_A 114 VNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVT 184 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 99988888888777743 0 111 233344566667788999999999999998853
|
| >1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=88.98 E-value=2.1 Score=45.86 Aligned_cols=99 Identities=17% Similarity=0.351 Sum_probs=74.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 977 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~-DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~ll 977 (2052)
+.+.||.. +-.|.+++.. .+..-.+.+.+|++||+ ..|.+++..||.++..+++.+|+.|...+ +.++
T Consensus 29 l~~~Dw~~----~leicD~I~~-----~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl 99 (157)
T 1elk_A 29 LQSEDWAL----NMEICDIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 99 (157)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHH
Confidence 34568964 3345555542 12334889999999997 68999999999999999999999997643 3466
Q ss_pred HH-HHHHhC---CCcHHHHHHHHHHHHHHHHhcCc
Q 000146 978 SD-ILKCLG---DNKKHMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 978 p~-ll~~l~---D~k~~VR~aa~~aL~~i~~~~~l 1008 (2052)
.. ++..+. +....|++-+...+..|....+.
T Consensus 100 ~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~ 134 (157)
T 1elk_A 100 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRS 134 (157)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 66 566664 33458999999999999998753
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=88.70 E-value=8.3 Score=43.79 Aligned_cols=149 Identities=16% Similarity=0.117 Sum_probs=107.9
Q ss_pred hhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHhcCchh
Q 000146 932 TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILK-CLGDNKKHMRECTLTVLDAWLAAVHLDK 1010 (2052)
Q Consensus 932 ~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~-~l~D~k~~VR~aa~~aL~~i~~~~~l~~ 1010 (2052)
..+++........|..-.|+..|+.+|+.+ . ....+++.+.. .-.|..=-||..+..+++.++...+++.
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~ 139 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK 139 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH
Confidence 356666666666777779999999977766 2 23557777776 5668888999999999999998788888
Q ss_pred hHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHH-hhcCCCCHHHHHHHHHHHHHHHHHcChhHHHH
Q 000146 1011 MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPAS-IAMTDKSSDVRKAAEACIVEILRAGGQETIEK 1089 (2052)
Q Consensus 1011 ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~-~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~ 1089 (2052)
.++.+..-+.++ |+.+|..+.+.+... ...+........+.|++ ....|++.=||++..-.|..+.+.-+ +.+..
T Consensus 140 ~l~~~~~W~~d~--n~~VRR~Ase~~rpW-~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P-d~V~~ 215 (240)
T 3l9t_A 140 ALPIIDEWLKSS--NLHTRRAATEGLRIW-TNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP-DLVKI 215 (240)
T ss_dssp THHHHHHHHHCS--SHHHHHHHHHHTCSG-GGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH-HHHHH
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHhhHHH-hccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH-HHHHH
Confidence 888888888877 689999888886532 22222222344455544 45699999999999999988776654 45666
Q ss_pred Hhcc
Q 000146 1090 NLKD 1093 (2052)
Q Consensus 1090 ~l~~ 1093 (2052)
++..
T Consensus 216 ~~~~ 219 (240)
T 3l9t_A 216 ELKN 219 (240)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6654
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=87.96 E-value=4.6 Score=45.97 Aligned_cols=98 Identities=17% Similarity=0.353 Sum_probs=70.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+.+.||.. +-.|-+++.. .+..-.+.+.+|++||+..|.+++..||.+|..+++..|..|... .+.++.
T Consensus 21 ~~~~dw~~----ileicD~I~~-----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~ 91 (226)
T 3zyq_A 21 LLETDWES----ILQICDLIRQ-----GDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTME 91 (226)
T ss_dssp CSSCCHHH----HHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHH
Confidence 34568863 4445555542 123347899999999999999999999999999999999987643 233444
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcC
Q 000146 979 DILKCLG-DNKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 979 ~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
.+.+.++ .....|++-+.+.|..|.....
T Consensus 92 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 121 (226)
T 3zyq_A 92 ELKDLLKRQVEVNVRNKILYLIQAWAHAFR 121 (226)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 4433333 2446788888888888887664
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=87.62 E-value=4.4 Score=45.97 Aligned_cols=123 Identities=15% Similarity=0.120 Sum_probs=91.0
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh-hhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHH
Q 000146 899 KSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVL 977 (2052)
Q Consensus 899 ~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~-rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~ll 977 (2052)
....+....+|..|+..|..+ . . ..+++..++. .-.|.+-.|+-.+...++.++...++. ..+
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~--------~-~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------~~l 141 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-S--------K-DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------KAL 141 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-T--------T-SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------TTH
T ss_pred HHHhCcchHHHHHHHHHHHhc-c--------C-cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------HHH
Confidence 334666789999999965443 1 2 2788899988 447899999999888888888755544 366
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHh----cCchhhHHHHHHHHhcCccChhHHHHHHHHHHHH
Q 000146 978 SDILKCLGDNKKHMRECTLTVLDAWLAA----VHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQ 1039 (2052)
Q Consensus 978 p~ll~~l~D~k~~VR~aa~~aL~~i~~~----~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~ 1039 (2052)
+.+..-+.|.+..||.+|.+++.-|... ...+.++|.|.....++ +--+|..+-.||..+
T Consensus 142 ~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~--s~yVrKSVan~LrD~ 205 (240)
T 3l9t_A 142 PIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDV--SEYVRKSVGNALRDI 205 (240)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHH
Confidence 7888899999999999999998777654 23455666555555454 467899998888874
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=87.28 E-value=35 Score=39.41 Aligned_cols=152 Identities=11% Similarity=0.074 Sum_probs=106.3
Q ss_pred HHHhhcCC-CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 896 TLVKSLES-PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 896 ~ll~~l~d-~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+++..... .+ .+|.+.|..+++++-.. .|..|.++++.+.....|.+..|+......|.+.+.. + ..++.
T Consensus 19 ~lln~A~~~~~-~~kl~~L~qa~el~~~~----dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~---k-~~l~~ 89 (257)
T 3gs3_A 19 DWCNELVIASP-STKCELLAKVQETVLGS----CAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV---K-VELLP 89 (257)
T ss_dssp HHHHHHTTCCH-HHHHHHHHHHHHHHTTT----TGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHH
T ss_pred HHHHHhhhcCc-HHHHHHHHHHHHHHHcc----CHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH---H-HHHHH
Confidence 34444433 34 69999999999987532 3556788888888877899999999999999888833 1 35788
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHh-cCccChhHHHHHHHHHHHHhccCCCCCchhhhH
Q 000146 975 GVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALT-DAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLL 1053 (2052)
Q Consensus 975 ~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~-~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll 1053 (2052)
.+++.+...+.|..+.|...++.|...++. .+...+. ++. .+..-..+|+++... +.
T Consensus 90 ~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~---------~~l~~i~~~~~-~~~~~~~~W~~m~~l----------K~-- 147 (257)
T 3gs3_A 90 HVINVVSMLLRDNSAQVIKRVIQACGSIYK---------NGLQYLCSLME-PGDSAEQAWNILSLI----------KA-- 147 (257)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH---------HHHHHHTTSSS-CCHHHHHHHHHHHHH----------HH--
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH---------HHHHHHhcCCC-CcchHHHHHHHHHHH----------HH--
Confidence 888999999999999999988888887765 2333332 321 122346788887642 11
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000146 1054 KPASIAMTDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1054 ~pl~~~L~D~~~dVRkaA~~~L~~l~ 1079 (2052)
-++..++..+..||-.+.+.+..++
T Consensus 148 -~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 148 -QILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp -HHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHccCCcchHHHHHHHHHHHH
Confidence 1344456678889988877665443
|
| >3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 | Back alignment and structure |
|---|
Probab=85.93 E-value=3.9 Score=42.90 Aligned_cols=79 Identities=18% Similarity=0.277 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh--hhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 439 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV--HKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 439 ~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~--l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
+..+.+..|..-++++||.+...++..|..|+++++.. |... -+.++..+.+++..+++.||+...+.+......++
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~-f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~ 117 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI-FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFK 117 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH-HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH-HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhC
Confidence 34556666666788999999999999999999999764 2211 15566666777777899999999999999988887
Q ss_pred Ch
Q 000146 517 MR 518 (2052)
Q Consensus 517 e~ 518 (2052)
..
T Consensus 118 ~~ 119 (140)
T 3ldz_A 118 ND 119 (140)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=85.47 E-value=5.5 Score=42.90 Aligned_cols=81 Identities=19% Similarity=0.299 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHh-hhhHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHh
Q 000146 438 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKV-HKDYVPICMECLND-GTPEVRDAAFSVLAAIAKSV 515 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~-l~~l~p~l~k~l~D-s~~~VR~aA~~~l~~l~~~~ 515 (2052)
.+..+.+..|..-++++||.+...++..|..|+++|+...-..+ -+.++..+++++.. .++.||+...+.+......+
T Consensus 48 ~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f 127 (163)
T 1x5b_A 48 NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEF 127 (163)
T ss_dssp SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 34556666666778999999999999999999999976422111 14466666666655 77899999999999988888
Q ss_pred CCh
Q 000146 516 GMR 518 (2052)
Q Consensus 516 Ge~ 518 (2052)
+..
T Consensus 128 ~~~ 130 (163)
T 1x5b_A 128 QKD 130 (163)
T ss_dssp TTC
T ss_pred cCC
Confidence 754
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=85.45 E-value=23 Score=43.38 Aligned_cols=143 Identities=8% Similarity=0.116 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCC
Q 000146 907 KVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 986 (2052)
Q Consensus 907 k~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D 986 (2052)
.++.+.|..+++++-.. .|+.+.+++..+...-.|.+..|+...+.+|.+.+.. + ..++..+++.+...|.|
T Consensus 40 ~~Kl~~L~q~~EL~l~~----dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~---~-~el~~~~l~~L~~LL~d 111 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK----DPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR---D-IELLLKLIANLNMLLRD 111 (386)
T ss_dssp THHHHHHHHHHHHHHTT----CGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH---C-GGGHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcc----CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHcC
Confidence 47999999999987632 4556788999998888999999999999999988863 2 34567788888888999
Q ss_pred CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHH
Q 000146 987 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSD 1066 (2052)
Q Consensus 987 ~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~d 1066 (2052)
..+.|...++.|...++. .+...+.........-..+|+|+... +. -++..++..|..
T Consensus 112 ~d~~V~K~~I~~~tslYp---------l~f~~i~~~~~~~~~~e~~W~~m~~l----------K~---~Il~~~ds~n~G 169 (386)
T 3o2t_A 112 ENVNVVKKAILTMTQLYK---------VALQWMVKSRVISELQEACWDMVSAM----------AG---DIILLLDSDNDG 169 (386)
T ss_dssp SSHHHHHHHHHHHHHHHH---------HHHHHHHHC-CCCHHHHHHHHHHHHH----------HH---HHHHGGGCSSHH
T ss_pred CCHHHHHHHHHHHHHHHH---------HHHHHHhcCCCcchhHHHHHHHHHHH----------HH---HHHHHhccCCcc
Confidence 999999888888887653 33333332211123346788888752 11 134446667889
Q ss_pred HHHHHHHHHHHHH
Q 000146 1067 VRKAAEACIVEIL 1079 (2052)
Q Consensus 1067 VRkaA~~~L~~l~ 1079 (2052)
||-.+.+.+..++
T Consensus 170 Vrl~aiKFle~VI 182 (386)
T 3o2t_A 170 IRTHAIKFVEGLI 182 (386)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9988887665443
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.77 E-value=12 Score=42.84 Aligned_cols=145 Identities=8% Similarity=-0.054 Sum_probs=95.7
Q ss_pred HHHHHHHhc--CcCHHHHHHHHHHHHHHHHHhhhcchh-hhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCH--
Q 000146 366 CRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRTHFSG-SSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNL-- 440 (2052)
Q Consensus 366 ~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l-- 440 (2052)
++.|.+.|. |....+...|+.+|..++.+-...-.. .-...+|.|+..++...+.+++.+..||..+... +..-
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~-~~~nk~ 88 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE-DNDNKL 88 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-CHHHHH
Confidence 445555666 444488888889999988653221111 1224679999999999999999999999999753 1111
Q ss_pred ----HHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhc-------C---------CChH
Q 000146 441 ----VDVVEDVKTSVK-NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN-------D---------GTPE 499 (2052)
Q Consensus 441 ----~~ll~~l~~~L~-~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~-------D---------s~~~ 499 (2052)
...++.|...|. ++++.+++.+...|..+-....-. ....+.-+|.|+..+. | .+.+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k--~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK--NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH--HHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH--HHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 124566777787 578999999887777754322111 1223445666665441 2 3679
Q ss_pred HHHHHHHHHHHHHH
Q 000146 500 VRDAAFSVLAAIAK 513 (2052)
Q Consensus 500 VR~aA~~~l~~l~~ 513 (2052)
|+..|..||..+..
T Consensus 167 v~~na~~~L~nLss 180 (233)
T 3tt9_A 167 IFYNVTGCLRNMSS 180 (233)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987753
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=82.68 E-value=8.3 Score=47.97 Aligned_cols=127 Identities=13% Similarity=0.177 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHH
Q 000146 363 TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVD 442 (2052)
Q Consensus 363 ~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ 442 (2052)
..-+.++..++.|..+.|+..|++-|-.+|++ .++..+.-.|...+..-.+.-.+++.++|..++.. ....
T Consensus 64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~---Dpk~ 134 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKM---DAKG 134 (507)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhc---ChHH
Confidence 46677888888999999999999999988876 34666666777777777788899999999999985 3334
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhh-hHHHHHHHhhcCCCh
Q 000146 443 VVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHK-DYVPICMECLNDGTP 498 (2052)
Q Consensus 443 ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~-~l~p~l~k~l~Ds~~ 498 (2052)
.+..++..+.+....+|..++.||..-+...++..+.+-+. -++..+.+.|.|-..
T Consensus 135 tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DVT~ 191 (507)
T 3u0r_A 135 TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDVTG 191 (507)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSCCH
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccccH
Confidence 44444444444468999999999998887765554433332 366677788866654
|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 | Back alignment and structure |
|---|
Probab=82.62 E-value=2.6 Score=47.78 Aligned_cols=98 Identities=15% Similarity=0.300 Sum_probs=70.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+.+.||..= -.|-+++.. .+..-.+.+.+|+++|+..|.+++..||.++..+++..|..|... .+.++.
T Consensus 18 ~~~~dw~~~----leicd~i~~-----~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~ 88 (220)
T 1dvp_A 18 RLEPDWPSI----LLICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (220)
T ss_dssp CSSCCHHHH----HHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCcCHHHH----HHHHHhhcC-----CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHH
Confidence 345789753 335555542 122347899999999999999999999999999999999988643 233555
Q ss_pred HHHHHhC-CCcHHHHHHHHHHHHHHHHhcC
Q 000146 979 DILKCLG-DNKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 979 ~ll~~l~-D~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
.+...++ .....|++.+.+.+..|.....
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 118 (220)
T 1dvp_A 89 MFSSFLESTPHENVRQKMLELVQTWAYAFR 118 (220)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 5444443 3456788888888888887654
|
| >3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* | Back alignment and structure |
|---|
Probab=82.55 E-value=3.6 Score=43.59 Aligned_cols=75 Identities=12% Similarity=0.159 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCC---cChHHHHhhhhhhhCC------CChhHHHHHHHHHHHHH
Q 000146 165 VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLELC 235 (2052)
Q Consensus 165 ~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~---i~~k~il~~l~~ll~~------~dk~VR~~a~~l~vely 235 (2052)
+...+..|.+.+.++||+++.-+|..|..++++=|... +.-+.|+..|.+++.. .+..||+....++.+-+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999999999988732 4557899999999864 67899999999987777
Q ss_pred HhhC
Q 000146 236 RWIG 239 (2052)
Q Consensus 236 ~~lG 239 (2052)
...+
T Consensus 126 ~~f~ 129 (149)
T 3g2s_A 126 VGLP 129 (149)
T ss_dssp HHCT
T ss_pred HHhC
Confidence 6664
|
| >1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 | Back alignment and structure |
|---|
Probab=81.18 E-value=13 Score=39.26 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=73.8
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHH
Q 000146 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 410 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 410 (2052)
+.+.+|.- ..+|..+++.. +..-.+.+++|+++|+..|+.|+..|+.+++.+.+--|..|... .+.++..|
T Consensus 14 l~~~dw~~----~leicD~I~~~---~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL 86 (148)
T 1mhq_A 14 MSEQDWSA----IQNFCEQVNTD---PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNEL 86 (148)
T ss_dssp CSSCCHHH----HHHHHHHHHHS---SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred CCCcCHHH----HHHHHHHHHcC---CccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 45678854 44455544321 12346889999999999999999999999999999999999654 36788888
Q ss_pred HHHhccC------cHHHHHHHHHHHHHHHHh
Q 000146 411 LEKLKEK------KPTVAESLTQTLQAMHKA 435 (2052)
Q Consensus 411 L~klkdk------K~~V~~aa~~aL~ai~~~ 435 (2052)
...++.+ ...|++-+.+.+..|...
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 87 IKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7777652 578999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2052 | ||||
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-15 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 2e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-11 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-09 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 1e-05 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-07 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 3e-07 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 9e-06 | |
| d1b3ua_ | 588 | a.118.1.2 (A:) Constant regulatory domain of prote | 0.001 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 5e-05 | |
| d2bpta1 | 861 | a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( | 5e-04 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 0.001 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 0.001 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 0.003 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.6 bits (197), Expect = 2e-15
Identities = 153/1079 (14%), Positives = 314/1079 (29%), Gaps = 102/1079 (9%)
Query: 361 DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT 420
+V + + KL+ D N V A++ +G L ++ + ++ L + K
Sbjct: 42 SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQ 98
Query: 421 VAESLTQTLQAM------HKAGCLNLVDVVEDV-----KTSVKNKVPLVRSLTLNWVTFC 469
+ + + L+ + +G +V + + K + V+ L+ +
Sbjct: 99 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 158
Query: 470 IETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDD 529
+ ++ H + + L VR L + S G IE L
Sbjct: 159 LSRQGGL-LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLS 217
Query: 530 VRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSA 589
S + S G + + F +
Sbjct: 218 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFE 277
Query: 590 APASKKGGPVKPSAKK--DGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVG 647
+ + V P + K T +D + E +++ D
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 648 QLKSAVWKERLEAISSLRQQV-EAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVI 706
WK R A L V + L + + + + E+NV+ +V
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKA-----DVF 392
Query: 707 NYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMK 766
+ + + LC E+ T + I + L+K MK
Sbjct: 393 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQ--SQVPN---------IVKALHKQMK 441
Query: 767 DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGL--QSSAAATRNATIKLLGA 824
+ K+ K + V + + ++ L +SS++ + + L
Sbjct: 442 E-KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 500
Query: 825 LHKFVGPD-IKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 883
+ P + + P +++ + + K E +V ++ V+ SS +
Sbjct: 501 ILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 560
Query: 884 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRL 943
+ +K L++ D E E + + + +L L+ L
Sbjct: 561 YIK-----DLFTCTIKRLKAADI--DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFL 613
Query: 944 -YDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL-GDNKKHMRECTLTVLDA 1001
N+ + T+ L +A + + G IL N++ ++ TL+ LD
Sbjct: 614 ERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDI 673
Query: 1002 WLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMT 1061
+ + D + +L L D S +T
Sbjct: 674 LIKNYSDSLT------------------AAMIDAVLDELPPLISESDMHVSQMAISF-LT 714
Query: 1062 DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSK 1121
+ + IL L+ A+ + + + G + + +
Sbjct: 715 TLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR 774
Query: 1122 SSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDR 1181
+ S S ++ + ++ + A + AV Q + +VK+S D
Sbjct: 775 MLTGPVYSQSTALTHKQSYYSIAKCV----AALTRACPKEGPAVVGQFIQDVKNSRSTDS 830
Query: 1182 ERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIR 1241
R+ + + E+ + + + +L + LE ++
Sbjct: 831 IRL---------LALLSLGEVGHHIDLSGQLELKSVI-----------LEAFSSPSEEVK 870
Query: 1242 KDIIEVLDILLRW-------FVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAA 1294
L + FVLQ S +L L E+ + G +
Sbjct: 871 SAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG---LKPYVE 927
Query: 1295 VFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLV 1354
L++ E R + E ++ T LP + L S ++ R V V
Sbjct: 928 NIWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-LLPRLKGYLISGSSYARSSVVTAV 986
Query: 1355 GFLIDHHGAEISGQLKSL-QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKL 1412
F I H I LK+ + D +R+ AL T + I + +
Sbjct: 987 KFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTV 1045
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.8 bits (164), Expect = 1e-11
Identities = 128/1017 (12%), Positives = 281/1017 (27%), Gaps = 110/1017 (10%)
Query: 94 PLFKKTVADSNAPVQDKALDALIA-YLKAADADAGRYAKEVCDA----------IAAKCL 142
+ K + D N VQ+ A+ L K + +C I++ L
Sbjct: 48 KMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGL 107
Query: 143 TGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAV-VPAIDVMFQALSEFGAK 201
+ A + L + + AI + +V + A+D+M LS G
Sbjct: 108 KTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL 165
Query: 202 IIPP-KRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRD-TMKKEL 259
++ IL L VR + L G ++ + + + +
Sbjct: 166 LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSM 225
Query: 260 EVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 319
+ A +R+ + L + + ++ + + E +
Sbjct: 226 STTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK 285
Query: 320 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIA 379
+ P + +K + + E + D + D++
Sbjct: 286 EVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWK 345
Query: 380 VAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL- 438
V A + + + + + P L+ + KE++ V + ++ K
Sbjct: 346 VRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPV 405
Query: 439 ----------------------NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 476
+ ++V+ + +K K R N +T +
Sbjct: 406 QSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV-LPG 464
Query: 477 AVLKVHKDYVPICMECLNDGTP--EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNK 534
A+ + VP + LND + ++ A S L I + + ++ L
Sbjct: 465 ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVAC 524
Query: 535 LSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASK 594
+ + + A + V+ + +++ + + K
Sbjct: 525 VGDPFYKITSE-ALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVK 583
Query: 595 KGGPVKPSAKKDGSGKQETSKLT----------EAPEDVEPSEMSLEEIESRLGSLIPAD 644
+ G S L + + +L I +
Sbjct: 584 ERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRP 643
Query: 645 TVGQL--------KSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNV 696
+G+ + +L +S+L ++ + + I L + P SE ++
Sbjct: 644 VLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDM 703
Query: 697 QVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTF-------- 748
V Q I + LA K L + V + A+ + F
Sbjct: 704 HVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTG 763
Query: 749 SEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFG--VSHLKLKDLIDFCKDTG 806
+ +G + L + + + V + F +D
Sbjct: 764 TNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVK 823
Query: 807 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEK------------ 854
S + R + LG + + ++K +L A + E+
Sbjct: 824 NSRSTDSIRLLALLSLGEVGHHIDLS---GQLELKSVILEAFSSPSEEVKSAASYALGSI 880
Query: 855 NPFEGTVVPKKTVRASESTSSVSSGGSDGLPR----------EDISGKFTPTLVKSLESP 904
+ ++ S L + L+K E
Sbjct: 881 SVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECA 940
Query: 905 DWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASA 964
+ R E + K+ + + P L+G L + + + + S
Sbjct: 941 EEGTRNVVAECLGKLTLIDPETLLPR--------LKGYLISGSSYARSSVVTAVKFTISD 992
Query: 965 MGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDA------WLAAVHLDKMVPYV 1015
++ K + D LK L D ++R L ++ L LD ++P++
Sbjct: 993 HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHL 1049
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.1 bits (162), Expect = 2e-11
Identities = 107/978 (10%), Positives = 275/978 (28%), Gaps = 80/978 (8%)
Query: 897 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLI 956
L++ + S D R + + L++ + ++ ++ + L D N + +
Sbjct: 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVK 67
Query: 957 TLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVL------------DAWLA 1004
LG + S + E + ++ + + +K+ +R+ + L + LA
Sbjct: 68 CLGPLVSKVK---EYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALA 124
Query: 1005 AVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTD 1062
A K+ +T+A+ + + + D ++ L+ G +L +T
Sbjct: 125 ANVCKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTS 183
Query: 1063 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1122
VRK + ++ + G ++ +L + N + + +
Sbjct: 184 PRLAVRKRTIIALGHLVMSCGNIVFVDLIEH--------LLSELSKNDSMSTTRT-YIQC 234
Query: 1123 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1182
+ + + A + + ++ + I V +V D ++ + E
Sbjct: 235 IAAISRQAGHRIGEYLEKIIPLVV---------KFCNVDDDELREYCIQAF--------E 277
Query: 1183 RMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRK 1242
V R K P + I + + Y + + DG + +
Sbjct: 278 SFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS 337
Query: 1243 DIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVE 1302
D ++ + R +T + EF + L E+ A +
Sbjct: 338 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLS 397
Query: 1303 KSGHNIEKVREKMRELTKQIVNFYSA------TKTLPYILEGLRSKNNRTRIECVDLVGF 1356
+ + + + ++ K+ +TR C +++
Sbjct: 398 LLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTE 457
Query: 1357 LI---DHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVGKLT 1413
L+ + L I + ++ AL+ L ++ +
Sbjct: 458 LVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQAL 517
Query: 1414 DAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDVSQSVSGPTL 1473
+K+ + + L + + + + +
Sbjct: 518 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAAD 577
Query: 1474 MRRNYGHSELHVERS---------------IMPRALASVSGPTDWNEAL----DIISFGS 1514
+ + + + L + + I
Sbjct: 578 IDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPL 637
Query: 1515 PEQSVEGMKVVCHELAQATNDPEGSVMDELVKDADRLVSCLANKVAKTFDFSLTGASSRS 1574
+ LA + ++ + D L+ ++ + ++
Sbjct: 638 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL 697
Query: 1575 CKYVLNTLMQTFQNKRLAYAVQESTLDSLITELLLWLLDERVPHMDDGSQLLKALNVLML 1634
+ Q + A + S I+ +L L V L A+
Sbjct: 698 ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQ 757
Query: 1635 KILDNADRTSSFVVLINLLRPLDPSRWPSPASNESFAARNQRFSDLVVKCLIKLTKVLQS 1694
++ ++ L+ +L S+ + +S+ + + + L C + V+
Sbjct: 758 ALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQ 817
Query: 1695 TIYDVDLDRILQSIHVYLQELGMEEIRRRAGADDKPLR--MVKTVLHELVKLRGAAIKGH 1752
I DV R SI + E + L+ +++ +++ AA
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYAL 877
Query: 1753 LSMVPIDMKPQ-PIILAYIDLNLETLAAARM-----LTSTGPGGQTHWGDSAANNPTSAT 1806
S+ ++ P +L I + ++S G + ++
Sbjct: 878 GSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 937
Query: 1807 NSADAQLKQELAAIFKKI 1824
A+ + +A K+
Sbjct: 938 ECAEEGTRNVVAECLGKL 955
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 65.9 bits (159), Expect = 4e-11
Identities = 116/1069 (10%), Positives = 288/1069 (26%), Gaps = 111/1069 (10%)
Query: 18 DRLLHKNWKVRNEANIDLAALCDSITDPKDNRI-------RELGQFSFIVSDLTFVWIRI 70
+L ++R+ ++I L + + + G+ + ++ V +++
Sbjct: 90 TNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQL 149
Query: 71 EHCG--CEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGR 128
E +M+ + + +F + + V+ + + AL + +
Sbjct: 150 EALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--- 206
Query: 129 YAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAI 188
++ + + ++ + + + + +A + +EK I V V
Sbjct: 207 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDD 266
Query: 189 DVMFQALSEFGAKI-IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTIL 247
++ + F + + PK + + + + + L D
Sbjct: 267 ELREYCIQAFESFVRRCPKEVYPHVSTIINICLK---------YLTYDPNYNYDDEDEDE 317
Query: 248 FEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPP 307
D + + S + K+R K L + + ++ +
Sbjct: 318 NAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSP--- 374
Query: 308 EIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDF-TEVC 366
+ + + + +K T+ + + + T +
Sbjct: 375 -ALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIV 433
Query: 367 RTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPT--VAES 424
+ L K + + ++ + L L + L+P ++ L +K + +
Sbjct: 434 KALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKID 493
Query: 425 LTQTLQAMHKAGCLNLVDVVED-----VKTSVKNKVPLVRS---LTLNWVTFCIETSSKA 476
L + + V V + + S L + I +
Sbjct: 494 ALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQP 553
Query: 477 AVLKVHKDYVPICMECLN-----DGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVR 531
+ + + D EV++ A S + I ++ L + +
Sbjct: 554 SSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL-GDNLGSDLPNTLQIF 612
Query: 532 RNKLSEMI-----AGSGGDVATGTSSARVQTSGGSVPSV----EASESSFVRKSAASMLS 582
+L I + +A ++ G + ++ S L
Sbjct: 613 LERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALD 672
Query: 583 GKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEP-SEMSLEEIESRLGSLI 641
+ + + + A + +++ + GS++
Sbjct: 673 ILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSIL 732
Query: 642 PADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCML---PGWSEKNVQV 698
+ L A+ Q + + L+R++ + + Q
Sbjct: 733 NELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQS 792
Query: 699 QQQVIEVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIF 758
+ + + L K V + + + R A+ L +
Sbjct: 793 YYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQL 852
Query: 759 ERLYKIMK--DHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRN 816
E I++ + +V S +A G + + S
Sbjct: 853 ELKSVILEAFSSPSEEVKS-------AASYALGSISVGNLPEYLPFVLQEITSQPKRQYL 905
Query: 817 ATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSV 876
L + +K ++ ++ LL + E
Sbjct: 906 LLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEE---------------------GT 944
Query: 877 SSGGSDGLPR--EDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGE 934
+ ++ L + P L L S R + AV + + + I P
Sbjct: 945 RNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-N 1003
Query: 935 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMR-- 992
G L D + N+ L+T + A + VL + K+ +R
Sbjct: 1004 CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREV 1063
Query: 993 --------------------ECTLTVLDAWLAAVHLDKMVPYVTTALTD 1021
EC T+LD+ L + + + + +V L D
Sbjct: 1064 EMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD 1112
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.3 bits (147), Expect = 1e-09
Identities = 122/1002 (12%), Positives = 283/1002 (28%), Gaps = 99/1002 (9%)
Query: 452 KNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAI 511
+ R + N + ++ S + V + ++ L D EV++ A L +
Sbjct: 13 TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPL 72
Query: 512 AKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESS 571
V +E ++ L + M+ S+
Sbjct: 73 VSKVKEYQVETIVDTL-------CTNML----------------------------SDKE 97
Query: 572 FVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGK-QETSKLTEAPEDVEPSEMSL 630
+R ++ L K + P + G + + K +G+ E + +
Sbjct: 98 QLRDISSIGL--KTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIM 155
Query: 631 EEIESRLGSLIPAD-------TVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVR 683
++ SR G L+ + QL S R I +L V + N V+++
Sbjct: 156 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-IVFVDLIEH 214
Query: 684 LVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISERVAD--IKTRAHA 741
L+ L ++ + I+ I ++ A + + + + + + R +
Sbjct: 215 LLSELS--KNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYC 272
Query: 742 MKCLTTFSEAVGPGF------IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL 795
++ +F I K + N E
Sbjct: 273 IQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDE-----DEDENAMDADGGDD 327
Query: 796 KDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKN 855
D + + + R A K L A+ + F V PAL+S E
Sbjct: 328 DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENV 387
Query: 856 PFEGTV-------VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKV 908
+ + ++ G + + L K ++ K
Sbjct: 388 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT 447
Query: 909 RLESIEAVNKILEEANKRIQPAGTGELFGGLRG-RLYDSNKNLVMATLITLGAVASAMGP 967
R + +++ + + G + S+ NL + L L + P
Sbjct: 448 RQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSP 507
Query: 968 -AVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-------------HLDKMVP 1013
+ ++ ++ C+GD + L V + + ++ +
Sbjct: 508 QVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFT 567
Query: 1014 YVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEA 1073
L A + E ++ + + + L + K+ R
Sbjct: 568 CTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVK 627
Query: 1074 CIVEILRAGGQETIEKNLKDIQ---GPALALILERIKLNGASQVSMGPTSKSSSKVPKSA 1130
+ I + + + L + L +KL S + + + S S
Sbjct: 628 ALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMI 687
Query: 1131 SNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFK 1190
+ + S + ++ A + + + + R + +
Sbjct: 688 DAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGG 747
Query: 1191 FEDPRIEQIQEL-----ENDMMKYFREDLHRRLLSTD-FKKQVDGLEMLQKALPSIRKDI 1244
++ Q L N L + S + K + ++ +
Sbjct: 748 ALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC 807
Query: 1245 IEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKS 1304
+ ++ F+ S +T +++L L +L + G+ + S ++E
Sbjct: 808 PKEGPAVVGQFIQDVKNSRSTDSIRLLALL-----SLGEVGHHIDLSGQLELKSVILEAF 862
Query: 1305 GHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAE 1364
E+V+ I + + LP++L+ + S+ R + L +
Sbjct: 863 SSPSEEVKSAASYALGSISV-GNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVG 921
Query: 1365 ISGQLKS-LQIVASLTAERDGEIRKAALNTLATGYKILGEDI 1405
+ +++ ++ + R L I E +
Sbjct: 922 LKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETL 963
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 1e-05
Identities = 56/502 (11%), Positives = 140/502 (27%), Gaps = 27/502 (5%)
Query: 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCG 74
P + +K+ +EA + L I + + + T ++
Sbjct: 520 PVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID 579
Query: 75 CEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVC 134
E+ + + + LG + ++ + + L I L A
Sbjct: 580 QEVKERAISCMGQIICNLGDNLGSDLPNTL-QIFLERLKNEITRLTTVK-ALTLIAGSPL 637
Query: 135 DAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQA 194
L + ++L + +++ + A + +D +
Sbjct: 638 KIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPL 697
Query: 195 LSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDT 254
+ + + + L L ++ S + EL + ++ M D
Sbjct: 698 --ISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDF 755
Query: 255 MKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYEL 314
+ + N+ + + ++S + +
Sbjct: 756 FQALVVTGTNNLGY----------MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTR 805
Query: 315 VDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT 374
P + + + + S R A+ L ++ I E+ + + +
Sbjct: 806 ACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVG--HHIDLSGQLELKSVILEAFS 863
Query: 375 DVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHK 434
+ V A A+G+++ G + LP +L+++ + L + +
Sbjct: 864 SPSEEVKSAASYALGSISVGNLPEY-------LPFVLQEITSQPKRQYLLLHSLKEIISS 916
Query: 435 AGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLN 494
A + L VE++ + T N V C+ L + +P L
Sbjct: 917 ASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLG----KLTLIDPETLLPRLKGYLI 972
Query: 495 DGTPEVRDAAFSVLAAIAKSVG 516
G+ R + + +
Sbjct: 973 SGSSYARSSVVTAVKFTISDHP 994
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 3e-07
Identities = 73/598 (12%), Positives = 165/598 (27%), Gaps = 40/598 (6%)
Query: 807 LQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKT 866
L++ R +IK L + +G + +++ P L + E E
Sbjct: 19 LRNEDVQLRLNSIKKLSTIALALGVERT--RSELLPFLTDTIYDEDE------------- 63
Query: 867 VRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKR 926
V + + + G P + P L + VR +++E++ I E +
Sbjct: 64 VLLALAEQLGTFTTLVGGP--EYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHS-- 119
Query: 927 IQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGD 986
P+ F L RL + + G + + D
Sbjct: 120 --PSDLEAHFVPLVKRLAGGDW--FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSD 175
Query: 987 NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF 1046
+ +R + L + + LD + + ++ + L +
Sbjct: 176 DTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLP 235
Query: 1047 PD--AAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILE 1104
+ A ++ A DKS VR E+ +A G E + +L +
Sbjct: 236 QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEA 295
Query: 1105 RIKLNGASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFA 1164
++ + +V + S+ + + +S K A IM +
Sbjct: 296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355
Query: 1165 VQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQEL--ENDMMKYFREDLHRRLLSTD 1222
+ + ++ + ++ + E+ + + +
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAK 415
Query: 1223 FKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLR 1282
++ ++ +E + + + + L L +L +
Sbjct: 416 WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMA--WLVDHVYAIREAATSNLKKLVEKFG 473
Query: 1283 DEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYS----ATKTLPYILEG 1338
E A +P ++ SG R + LP +L
Sbjct: 474 KEWAH------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRM 527
Query: 1339 LRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLAT 1396
R + + Q + I+ LT ++D +++ A L
Sbjct: 528 AGDPVANVRFNVAKSLQKIGPILDNSTL-QSEVKPILEKLTQDQDVDVKYFAQEALTV 584
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.9 bits (125), Expect = 3e-07
Identities = 49/501 (9%), Positives = 129/501 (25%), Gaps = 44/501 (8%)
Query: 14 LPWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHC 73
+P RL +W + L ++C EL Q+ + +R
Sbjct: 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV--KAELRQYFRNLCSDDTPMVRRAAA 185
Query: 74 GCEMMRCRFTSIYSFVLMLGPLFKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEV 133
+ + + + P+F +D V+ A++A + + + V
Sbjct: 186 SKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED--LEALV 243
Query: 134 CDAIAAKCLTGRPKTVEKAQAVFMLWVELEAVDVFLDVMEKAIKNKVAKAVVPAIDVMFQ 193
+ + F + ++ + A +N +
Sbjct: 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASH 303
Query: 194 ALSEFGAKIIPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRD 253
+ EF + R ++ ++ + V +++ + L I +
Sbjct: 304 KVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEH 363
Query: 254 TMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYE 313
+ L ++ +G +S+
Sbjct: 364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS--------------------- 402
Query: 314 LVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLI 373
+ + L + W A + L + ++ +
Sbjct: 403 ---LLPAIVELAEDAKWRVRLAIIE-----YMPLLAGQLGVEFFDE----KLNSLCMAWL 450
Query: 374 TDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMH 433
D A+ A + L ++ ++P +L + + + +
Sbjct: 451 VDHVYAIREAATSNLKKLVEKFGKEWA--HATIIPKVLAMSGDPNYLHRMTTLFCINVLS 508
Query: 434 KAGCLNLV--DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 491
+ ++ ++ V + V VR + + + + PI +
Sbjct: 509 EVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL---QSEVKPILEK 565
Query: 492 CLNDGTPEVRDAAFSVLAAIA 512
D +V+ A L ++
Sbjct: 566 LTQDQDVDVKYFAQEALTVLS 586
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 9e-06
Identities = 36/195 (18%), Positives = 61/195 (31%), Gaps = 11/195 (5%)
Query: 888 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN 947
+S P +V+ E W+VRL IE + + + L D
Sbjct: 398 QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL---VDHV 454
Query: 948 KNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH 1007
+ A L + G E + ++ +L GD R TL ++
Sbjct: 455 YAIREAATSNLKKLVEKFGK--EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512
Query: 1008 LD----KMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDK 1063
D M+P V D A R ++ L K L + + D+
Sbjct: 513 QDITTKHMLPTVLRMAGDPV--ANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQ 570
Query: 1064 SSDVRKAAEACIVEI 1078
DV+ A+ + +
Sbjct: 571 DVDVKYFAQEALTVL 585
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (95), Expect = 0.001
Identities = 81/612 (13%), Positives = 171/612 (27%), Gaps = 44/612 (7%)
Query: 319 DILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNI 378
D L P+ + ++ R +++ +L+ +A + +E+ L I D
Sbjct: 7 DSLYPIAV--LIDELRNEDVQLRLNSIKKLSTIALALGVER-TRSELLPFLTDTIYD-ED 62
Query: 379 AVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCL 438
V + + +G + LLP L ++ V + ++L+A+ +
Sbjct: 63 EVLLALAEQLGTFTTLV--GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI--SHEH 118
Query: 439 NLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 498
+ D+ VK + V + +D TP
Sbjct: 119 SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTP 178
Query: 499 EVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTS 558
VR A A +G ++ + S + + V A V +
Sbjct: 179 MVR-------RAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIA 231
Query: 559 GGSVPSVEASESSFVRKSAASMLSGKRPVSA---APASKKGGPVKPSAKKDGSGKQETSK 615
+ + AA S + +K + + Q K
Sbjct: 232 QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMK 291
Query: 616 LTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVW-----KERLEAISSLRQQVEA 670
EA S E E+ + Q+ + + + +
Sbjct: 292 DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351
Query: 671 VQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISE 730
L + I L L ++ +V+ +I ++ + +L +
Sbjct: 352 SPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELA 411
Query: 731 RVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLS--EGILWMVSAVEDF 788
A + R ++ + + +G F E+L + V + E + + +
Sbjct: 412 EDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK 471
Query: 789 GVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSAL 848
+I R T+ + L + G DI + P +L
Sbjct: 472 FGKEWAHATIIPKVLA-MSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMA 528
Query: 849 -DAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWK 907
D V ++ + + L + + P L K + D
Sbjct: 529 GDPVAN--------VRFNVAKSLQKIGPI-------LDNSTLQSEVKPILEKLTQDQDVD 573
Query: 908 VRLESIEAVNKI 919
V+ + EA+ +
Sbjct: 574 VKYFAQEALTVL 585
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 5e-05
Identities = 51/336 (15%), Positives = 116/336 (34%), Gaps = 29/336 (8%)
Query: 653 VWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQ----QQVIEVINY 708
+ + LEAI + Q ++ Q D+S EIL ++ + E + V+ ++ + +
Sbjct: 145 MKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGM-RKEEPSNNVKLAATNALLNSLEF 203
Query: 709 LAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDH 768
A K ++ ++ ++ + + D + R A++ L Y+ M+ +
Sbjct: 204 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI---------MSLYYQYMETY 254
Query: 769 KNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKF 828
P I + V+ ++ + C + + A+ + KF
Sbjct: 255 MGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF 312
Query: 829 VGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRED 888
+L + L+ D + + + + + +D
Sbjct: 313 YAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT-----------CCEDD 361
Query: 889 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNK 948
I P + + +++PDW+ R ++ A ILE + L + D +
Sbjct: 362 IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 421
Query: 949 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCL 984
+ T+G + + A L+ +L+CL
Sbjct: 422 VVRDTAAWTVGRICELLPEAAINDV--YLAPLLQCL 455
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 5e-04
Identities = 70/725 (9%), Positives = 202/725 (27%), Gaps = 57/725 (7%)
Query: 756 FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATR 815
I + P++ + +++A+ D + H +L+ D +
Sbjct: 95 QIKTNALTALVS-IEPRIAN-AAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVK 152
Query: 816 NATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 875
A++ LG + + P + ++ +L A+ + V + A + +
Sbjct: 153 RASLLALGYMCESADPQSQALVSSSNN-ILIAIVQGAQSTETSKAVR----LAALNALAD 207
Query: 876 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGEL 935
+ + RE + ++ ++ D +V+ + + KI+ + ++P L
Sbjct: 208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL 267
Query: 936 FGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECT 995
+ + N + T+ + + ++ L+ +++
Sbjct: 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQ-FPQSPLQSYNFALSSIKDVV 326
Query: 996 LTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKP 1055
+L+ + + + A L + L L
Sbjct: 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLE-------------F 373
Query: 1056 ASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVS 1115
+T + R+AA I+ + + L L +N S
Sbjct: 374 VEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNL------MNDQSLQV 427
Query: 1116 MGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKD 1175
T+ ++ S + + G + ++ + + +
Sbjct: 428 KETTAWCIGRIADSVAESIDPQ-QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE 486
Query: 1176 SNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGL-EMLQ 1234
+ + L + E R + V+ + +
Sbjct: 487 ATPSPIYNFY----------PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVA 536
Query: 1235 KALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTL-RDEGYSLTESEA 1293
+ SI +++ L + Q + L ++ + + + R S+
Sbjct: 537 ETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD 596
Query: 1294 AVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSAT------KTLPYILEGLRSKNNRTR 1347
+ + + + + + PY+L+ L ++
Sbjct: 597 MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVS 656
Query: 1348 IECVDLVGFLIDHHGAEISGQLKSL--QIVASLTAER-DGEIRKAALNTLATGYKILGED 1404
I V + + + + ++ + ++ E++ A L+ +G D
Sbjct: 657 ITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGAD 716
Query: 1405 IWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAALRRSVRENGSDIAEQSGDV 1464
Y+ + + + + + E + + + +V + I D
Sbjct: 717 FIPYLNDIMALCVAAQNTKPENGTLEAL--------DYQIKVLEAVLDAYVGIVAGLHDK 768
Query: 1465 SQSVS 1469
+++
Sbjct: 769 PEALF 773
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 0.001
Identities = 70/591 (11%), Positives = 171/591 (28%), Gaps = 61/591 (10%)
Query: 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY----DSNKNL 950
P L L+S D+ + A+ KI E++ + + + + S+ +
Sbjct: 129 PKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKI 188
Query: 951 VMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLA------ 1004
+ + + A+ ++ GD + +R+ L L
Sbjct: 189 RSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 248
Query: 1005 AVHLDKMVPYVTTALTDAKLG-AEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASI-AMTD 1062
H+ +V Y+ D A + + L++Q L P + M
Sbjct: 249 LPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 308
Query: 1063 KSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKS 1122
D+ + ++ I + A + I+ +
Sbjct: 309 SDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTI 368
Query: 1123 SSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRE 1182
S + S ++P + ++ ++ V+ +L + + +
Sbjct: 369 SDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ 428
Query: 1183 RM----------VVRRFKFEDPRIEQI-------------QELENDMMKYFREDLHRRLL 1219
M +++ + + I + + +K +L +R+L
Sbjct: 429 GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 488
Query: 1220 STDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFD 1279
++ + Q +++ L +L V F K LL + + + L D
Sbjct: 489 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 548
Query: 1280 TLRD-------------------EGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTK 1320
++ + + L CL + + +
Sbjct: 549 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ 608
Query: 1321 QIVNFYSAT--KTLPYILEGLRSKNNRT--RIECVDLVGFLIDHHGAEISGQLKSLQIVA 1376
+ VN T + + + + + I +DL+ L + G I + I+
Sbjct: 609 RCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILT 668
Query: 1377 SL---TAERDGEIRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRF 1424
+ ++ E+R+++ L K + + + + L+ F
Sbjct: 669 LMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 719
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2052 | |||
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.96 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.92 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.89 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.83 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.79 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.69 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.67 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.65 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.52 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.15 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.15 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.95 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 98.4 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 98.05 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 98.0 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 97.93 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.9 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 97.89 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 97.81 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.77 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.61 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 97.58 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 97.48 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.25 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 97.05 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 97.01 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.0 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 95.99 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 95.71 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 95.51 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 93.31 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 92.4 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 91.82 | |
| d1dvpa1 | 145 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 91.26 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 90.45 | |
| d1elka_ | 153 | Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | 84.22 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 83.7 | |
| d1juqa_ | 151 | ADP-ribosylation factor binding protein Gga3 {Huma | 83.45 | |
| d1ujka_ | 145 | ADP-ribosylation factor binding protein Gga1 {Huma | 83.14 | |
| d1mhqa_ | 143 | ADP-ribosylation factor binding protein Gga2 {Huma | 81.62 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 80.04 |
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=7.6e-25 Score=310.60 Aligned_cols=946 Identities=15% Similarity=0.139 Sum_probs=577.6
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchhH
Q 000146 16 WEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGPL 95 (2052)
Q Consensus 16 l~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (2052)
|-|++.+.++-.|.-|..+|.+.++...-.-+ ++ .+.+ +.+.
T Consensus 8 ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~-------------~~---~~~~----------------------i~~~ 49 (1207)
T d1u6gc_ 8 LLEKMTSSDKDFRFMATNDLMTELQKDSIKLD-------------DD---SERK----------------------VVKM 49 (1207)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCC-------------TT---HHHH----------------------HHHH
T ss_pred HHHhcCCCCHhHHHHHHHHHHHHHhhcccccC-------------hH---HHHH----------------------HHHH
Confidence 56899999999999999999998853110000 01 1111 1556
Q ss_pred HHHHhccCcHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHh-hhh-------hhh
Q 000146 96 FKKTVADSNAPVQDKALDALIAYLKAADADAGRYAKEVCDAIAAKCLTGRPKTVEKAQAVFMLWVE-LEA-------VDV 167 (2052)
Q Consensus 96 ~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~~~~~~vi~~LieK~L~~r~~tk~~A~~~~l~~~e-~~~-------~~~ 167 (2052)
+.+.+.|+|..||..|+.||..++..... .....++..|+...++.+..+|+.+.-++-..++ +.. ...
T Consensus 50 ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~---~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~ 126 (1207)
T d1u6gc_ 50 ILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN 126 (1207)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhCcH---hhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHH
Confidence 67789999999999999999999887654 3456788888888666778888876655544443 211 123
Q ss_pred HHHHH----HHHh-hccChhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCc
Q 000146 168 FLDVM----EKAI-KNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD 241 (2052)
Q Consensus 168 v~e~L----l~~l-~~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~ 241 (2052)
++..+ .... +.+.+.++.+++.++.+++..||....+ ...+++.+...+.|++..||..|..++..+..+++..
T Consensus 127 ~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~ 206 (1207)
T d1u6gc_ 127 VCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI 206 (1207)
T ss_dssp HHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH
Confidence 33333 3332 4467889999999999999999986554 4568999999999999999999999999999998764
Q ss_pred hhhHHH---HhhCh--------HHHHHHHHHHHHhccCCCCC--Cc--------------cchhhhhHhh-------hhc
Q 000146 242 PVKTIL---FEKMR--------DTMKKELEVELVNVSGTARP--TR--------------KIRAEQDKEL-------GQE 287 (2052)
Q Consensus 242 ~l~~~L---~~~Lk--------p~qlkeLe~~f~~~~~~~~p--~R--------------~~rs~~~~~~-------~~~ 287 (2052)
.+...+ .+.+. ..-++.+...+...+....| .. -+|....... +.+
T Consensus 207 ~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~ 286 (1207)
T d1u6gc_ 207 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE 286 (1207)
T ss_dssp -CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhh
Confidence 332221 01110 00011111111111000000 00 0010000000 000
Q ss_pred cc----------ccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCC
Q 000146 288 LI----------SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKR 356 (2052)
Q Consensus 288 ~~----------~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~k 356 (2052)
.. ......++. ........+.+..+.....+. .... +..+....+..|+.|+.+++.|..++. .+.
T Consensus 287 ~~~~~~~ii~~~l~~l~~dp~-~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~ 363 (1207)
T d1u6gc_ 287 VYPHVSTIINICLKYLTYDPN-YNYDDEDEDENAMDADGGDDD-DQGS-DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE 363 (1207)
T ss_dssp CHHHHHHHHHHHTTCCCCC---------------------------------------CTTHHHHHHHHHHHHHHTTCCT
T ss_pred hhhhHHHHHHHHHHHHhcCcc-hhhhhHHHHHhhhhhhccchh-hhhH-HHHHhhhhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 00 000000000 000000000000000001111 1111 345666788999999999999999874 455
Q ss_pred CCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhh-------------------cchhhhhhHHHHHHHHhccC
Q 000146 357 IAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT-------------------HFSGSSRFLLPVLLEKLKEK 417 (2052)
Q Consensus 357 i~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~-------------------~f~~~~~~llp~LL~klkdk 417 (2052)
.....|..+++.|...+.|.+..|+..++.+++.+....+. .+..+...+++.+...++++
T Consensus 364 ~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~ 443 (1207)
T d1u6gc_ 364 MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 443 (1207)
T ss_dssp THHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCC
Confidence 44455678889999999999999999999999998865432 13456778899999999999
Q ss_pred cHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHhhcCC--hHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHH
Q 000146 418 KPTVAESLTQTLQAMHKAGC----LNLVDVVEDVKTSVKNKV--PLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICME 491 (2052)
Q Consensus 418 K~~V~~aa~~aL~ai~~~~~----~~l~~ll~~l~~~L~~Kn--p~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k 491 (2052)
...++.++..++..++.... ..+..+++.+...+.+++ ..+|.+++.++..++..+....+.+++..+.+.+..
T Consensus 444 ~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 523 (1207)
T d1u6gc_ 444 SVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA 523 (1207)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHH
Confidence 99999999999999987621 235667777777887654 478999999999999998888888899999999999
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHhCCh------hHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCC
Q 000146 492 CLNDGTPEVRDAAFSVLAAIAKSVGMR------PLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSV 565 (2052)
Q Consensus 492 ~l~Ds~~~VR~aA~~~l~~l~~~~Ge~------~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 565 (2052)
++.|..+.+|..|..+++.+.+.++.. .+.+++..+-+.... .+.... .
T Consensus 524 ~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~----~l~~~~------~--------------- 578 (1207)
T d1u6gc_ 524 CVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIK----RLKAAD------I--------------- 578 (1207)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHH----HHSCSS------S---------------
T ss_pred HHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHH----HHHhcc------c---------------
Confidence 999999999999999999999987632 123344333221111 111000 0
Q ss_pred CCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHH----HH-------
Q 000146 566 EASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEE----IE------- 634 (2052)
Q Consensus 566 ~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee----~e------- 634 (2052)
...++..+....+.--.. -+....+. .....+. -.....+ +.+... +.
T Consensus 579 ----~~e~~~~al~~l~~l~~~-------~~~~~~~~-~~~~l~~-l~~~l~~--------~~~r~~a~~~l~~i~~~~~ 637 (1207)
T d1u6gc_ 579 ----DQEVKERAISCMGQIICN-------LGDNLGSD-LPNTLQI-FLERLKN--------EITRLTTVKALTLIAGSPL 637 (1207)
T ss_dssp ----CHHHHHHHHHHHHHHHHH-------TGGGCCTH-HHHHHHH-HHHHTTS--------SSHHHHHHHHHHHHTTCSS
T ss_pred ----chHHHHHHHHHHHHHHHH-------hhhhhHHH-HHHHHHH-HHHHhcc--------hhhHHHHHHHHHHHHHhcc
Confidence 000000000000000000 00000000 0000000 0000000 000000 00
Q ss_pred -----HHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcccc-ch-HHHHHHHHHhcCCCCcccHHHHHHHHHHHHH
Q 000146 635 -----SRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNL-DQ-SVEILVRLVCMLPGWSEKNVQVQQQVIEVIN 707 (2052)
Q Consensus 635 -----~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~-~~-~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~ 707 (2052)
..+..+ -+.+...+.+.+|..|..++..|..++...... .. ..+.++..+. +.+.|.+.++.+.+++++.
T Consensus 638 ~~~~~~~l~~~-~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~--~ll~~~d~~v~~~~l~~l~ 714 (1207)
T d1u6gc_ 638 KIDLRPVLGEG-VPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELP--PLISESDMHVSQMAISFLT 714 (1207)
T ss_dssp CCCCHHHHHHH-HHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCG--GGSCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHH-HHHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhc--cccccccHHHHHHHHHHHH
Confidence 001111 145677888999999999999999998884332 11 1233333322 3578899999999999998
Q ss_pred HHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHh-------------------------------------
Q 000146 708 YLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSE------------------------------------- 750 (2052)
Q Consensus 708 ~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E------------------------------------- 750 (2052)
.++...+.........+++.++..+.++.....+.+++..+..
T Consensus 715 ~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 794 (1207)
T d1u6gc_ 715 TLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYY 794 (1207)
T ss_dssp HHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHH
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccchhhHHHHHH
Confidence 8877654433333344445555444443222222222221111
Q ss_pred -----------hhChh--HHHHHHHHHH-hhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHH
Q 000146 751 -----------AVGPG--FIFERLYKIM-KDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRN 816 (2052)
Q Consensus 751 -----------~~~~~--~Vl~~L~~~l-~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~ 816 (2052)
..+.. .++..++... ....++.++..++..+.++....+... ...+.+.+... +.+.+..||.
T Consensus 795 ~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~--~~~l~~~l~~~-l~~~~~~vr~ 871 (1207)
T d1u6gc_ 795 SIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG--QLELKSVILEA-FSSPSEEVKS 871 (1207)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCS--CTHHHHHHHHG-GGCSCHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccc--hHHHHHHHHHH-hCCCCHHHHH
Confidence 11100 0011111111 123456777788888888777777643 23566667776 9999999999
Q ss_pred HHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHH--------------HHhcCCCCCCCCCccccccccccCCCCCCCCC
Q 000146 817 ATIKLLGALHKFVGPDIKGFLADVKPALLSALDA--------------EYEKNPFEGTVVPKKTVRASESTSSVSSGGSD 882 (2052)
Q Consensus 817 aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~--------------efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d 882 (2052)
+|..++|.+.....+.+. |.+++.++. -+.... .+
T Consensus 872 aAa~aLg~l~~~~~~~~l-------p~il~~l~~~~~~~~~ll~al~ei~~~~~------------------------~~ 920 (1207)
T d1u6gc_ 872 AASYALGSISVGNLPEYL-------PFVLQEITSQPKRQYLLLHSLKEIISSAS------------------------VV 920 (1207)
T ss_dssp HHHHHHHHHHHHTHHHHH-------HHHHHHHHSCGGGHHHHHHHHHHHHHSSC------------------------ST
T ss_pred HHHHHHHHHHHhhHHHHh-------HHHHHHHhcCchHHHHHHHHHHHHHHhcc------------------------hh
Confidence 999999988765443322 223333321 111100 00
Q ss_pred CCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHH
Q 000146 883 GLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVA 962 (2052)
Q Consensus 883 ~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la 962 (2052)
.+. .....|.+.++..+++.+|.+|..+.+++++++... ...+++.|..++.|.+..++..++.++..+.
T Consensus 921 ~~~--~~~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~--------~~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~ 990 (1207)
T d1u6gc_ 921 GLK--PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLID--------PETLLPRLKGYLISGSSYARSSVVTAVKFTI 990 (1207)
T ss_dssp TTH--HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSS--------GGGTHHHHTTTSSSSCHHHHHHHHHHTGGGC
T ss_pred hhH--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 110 112334456667788899999999999999987521 2568899999999999999999999999999
Q ss_pred HHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC--chhhHHHHHHHHhcC-cc---------------
Q 000146 963 SAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH--LDKMVPYVTTALTDA-KL--------------- 1024 (2052)
Q Consensus 963 ~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~--l~~ll~~l~~~L~~~-k~--------------- 1024 (2052)
..++..+.+|++.+++.++..++|++..||.+|..||++++++-+ +...++.+.+.|.+. ++
T Consensus 991 ~~~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~llp~l~~~t~~~~e~ir~v~~gp~kh 1070 (1207)
T d1u6gc_ 991 SDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKH 1070 (1207)
T ss_dssp CSSCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEE
T ss_pred HhcchhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhccchhheeeeecCCcee
Confidence 999999999999999999999999999999999999999998765 234455555554321 11
Q ss_pred ----ChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHH
Q 000146 1025 ----GAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALA 1100 (2052)
Q Consensus 1025 ----np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~ 1100 (2052)
.-++|+.+++.+...++.....-++.+++..+..+|.| +.|||--+..++..+....+. .+.+++..|-+.-++
T Consensus 1071 ~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~~-~~~~~l~~~~~~~~~ 1148 (1207)
T d1u6gc_ 1071 TVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCPS-AVLQRLDRLVEPLRA 1148 (1207)
T ss_dssp EEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCCH-HHHTTTTTTHHHHHH
T ss_pred ecCCcHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHH
Confidence 13599999999999998876666778888889999999 569999999999998887765 445565555444333
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.2e-20 Score=259.69 Aligned_cols=957 Identities=14% Similarity=0.136 Sum_probs=575.2
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhh---hhhh
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAG-RYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELE---AVDV 167 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~-~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~---~~~~ 167 (2052)
..++.| ++|........|+.-|...+........ .....+++.|+. +|. ..+.+|..|+.|+-.++..- ....
T Consensus 6 ~~ll~k-~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~-~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~ 83 (1207)
T d1u6gc_ 6 SNLLEK-MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILK-LLEDKNGEVQNLAVKCLGPLVSKVKEYQVET 83 (1207)
T ss_dssp HHHHHH-TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHh-cCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHhCcHhhHHH
Confidence 566666 5788888888888888777754322111 234567777765 577 68899999999998888762 3356
Q ss_pred HHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCc--C-----hHHHHhhhhhhh-CCCChhHHHHHHHHHHHHHHhhC
Q 000146 168 FLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKII--P-----PKRILKMLPELF-DHQDQNVRASSKGLTLELCRWIG 239 (2052)
Q Consensus 168 v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i--~-----~k~il~~l~~ll-~~~dk~VR~~a~~l~vely~~lG 239 (2052)
+++.|...+.+++.+.+..+..+|..++..++.... . .+.+++.+.... ...+..||.++..++.++....|
T Consensus 84 l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g 163 (1207)
T d1u6gc_ 84 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQG 163 (1207)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 777888888888999999888899999888765321 1 233444444443 34677899999998888888887
Q ss_pred CchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 000146 240 KDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVD 319 (2052)
Q Consensus 240 ~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vd 319 (2052)
.. +.+.. -.-+
T Consensus 164 ~~-l~~~~--------~~il------------------------------------------------------------ 174 (1207)
T d1u6gc_ 164 GL-LVNFH--------PSIL------------------------------------------------------------ 174 (1207)
T ss_dssp SS-CTTTH--------HHHH------------------------------------------------------------
T ss_pred Hh-hHHHH--------HHHH------------------------------------------------------------
Confidence 42 21110 0001
Q ss_pred ccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhc
Q 000146 320 ILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTH 398 (2052)
Q Consensus 320 Il~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~ 398 (2052)
+.+...+.+.+|..|+.|+..|..++.. +....+..++..+.+.+. +.+..++..+++|++.++...+..
T Consensus 175 -------~~l~~~l~~~~~~vR~~A~~~l~~l~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~ 245 (1207)
T d1u6gc_ 175 -------TCLLPQLTSPRLAVRKRTIIALGHLVMS--CGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR 245 (1207)
T ss_dssp -------HHHGGGGGCSSHHHHHHHHHHHHHHTTT--C----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG
T ss_pred -------HHHHHHhCCCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchh
Confidence 1233446677788999999999988742 112234556666666665 666777888999999999999999
Q ss_pred chhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHH------------------------
Q 000146 399 FSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN-----LVDVVEDVKT------------------------ 449 (2052)
Q Consensus 399 f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~-----l~~ll~~l~~------------------------ 449 (2052)
|.+|...++|.+++.+.+....+|+.+..++..++.. |.. +..+++.+..
T Consensus 246 ~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~-~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~ 324 (1207)
T d1u6gc_ 246 IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRR-CPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADG 324 (1207)
T ss_dssp GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHC-TTCCCHHHHHHHHHHHTTCCCCC-------------------
T ss_pred hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHh-ChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhc
Confidence 9999999999999999999999999999999999876 422 2233222211
Q ss_pred -------------HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 450 -------------SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 450 -------------~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
...+.+|.+|..++..|..++...+. .+..++..++|.+.+.+.|.++.||.++..++..+....+
T Consensus 325 ~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~-~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~ 403 (1207)
T d1u6gc_ 325 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE-MLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 403 (1207)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHTTCCT-THHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred cchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcc
Confidence 12356799999999999998876653 4567788999999999999999999999999988776654
Q ss_pred ChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCC
Q 000146 517 MRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKG 596 (2052)
Q Consensus 517 e~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~ 596 (2052)
....... + . .. .
T Consensus 404 ~~~~~~~----~-----------------------~-~~---------~------------------------------- 415 (1207)
T d1u6gc_ 404 PVQSWLC----D-----------------------P-DA---------M------------------------------- 415 (1207)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred chhhhhh----c-----------------------h-HH---------H-------------------------------
Confidence 3210000 0 0 00 0
Q ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH-HHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhcc-cc
Q 000146 597 GPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL-EEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQ-NL 674 (2052)
Q Consensus 597 ~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~-ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~-~~ 674 (2052)
....++ ..+...... +-..+...+.+++++.|..++..+..++.... ..
T Consensus 416 ----------------------------~~~~~~~~~l~~~~~~-i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l 466 (1207)
T d1u6gc_ 416 ----------------------------EQGETPLTMLQSQVPN-IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGAL 466 (1207)
T ss_dssp ------------------------------CCCHHHHHHHHTTH-HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTT
T ss_pred ----------------------------HhhcchHHHHHHHhHH-HHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHH
Confidence 000011 111111111 12456778889999999999999988877633 22
Q ss_pred chHHHHHHHHHhcCCCCcc--cHHHHHHHHHHHHHHHHHHcCC-CchhhHHHHHHHHHHhhhch--hhhHHHHHHHHHHH
Q 000146 675 DQSVEILVRLVCMLPGWSE--KNVQVQQQVIEVINYLAATATK-FPKKCVVLCLLGISERVADI--KTRAHAMKCLTTFS 749 (2052)
Q Consensus 675 ~~~~~~Lv~~L~~~pg~~D--sN~qV~~~~Le~l~~l~~~~~~-~~~~~~~~il~~LveKlgd~--K~r~~a~e~L~~l~ 749 (2052)
......++..+.. .+.| ....+...++.++..++..... ........+++.++..+.|. +++..+..++..++
T Consensus 467 ~~~l~~~~~~i~~--~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l~ 544 (1207)
T d1u6gc_ 467 TQHIPVLVPGIIF--SLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLV 544 (1207)
T ss_dssp GGGHHHHHHHHHH--HTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHhhHhhHHHHHH--HHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHHHHHHHHHHH
Confidence 2333333333221 1222 3345566777777777765432 23345566777777777774 67777777777777
Q ss_pred hhhCh---------hH----HHHHHHHHHh-hCCCHHHHHHHHHHHHHHHHHhCCCCC-ChHhHHHHHHhhCCCCCcHHH
Q 000146 750 EAVGP---------GF----IFERLYKIMK-DHKNPKVLSEGILWMVSAVEDFGVSHL-KLKDLIDFCKDTGLQSSAAAT 814 (2052)
Q Consensus 750 E~~~~---------~~----Vl~~L~~~l~-~~KnpKv~~e~L~~L~~~i~~fG~~~l-~~k~li~~l~~~gL~~~n~~V 814 (2052)
....+ .. ++..++..+. .+.+..++..++..+..++..+|.... .+..+++.+... +.+ ..+
T Consensus 545 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~~~~~~~~~~~~l~~l~~~-l~~--~~~ 621 (1207)
T d1u6gc_ 545 KVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLER-LKN--EIT 621 (1207)
T ss_dssp HHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHH-TTS--SSH
T ss_pred HHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-hcc--hhh
Confidence 75542 11 2333333332 356778888888888888887765322 234555555443 443 345
Q ss_pred HHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccccccccc
Q 000146 815 RNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFT 894 (2052)
Q Consensus 815 R~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~ 894 (2052)
|..+...+..+....... +. . .+...+.
T Consensus 622 r~~a~~~l~~i~~~~~~~-------------------------------------------------~~-~--~~l~~~~ 649 (1207)
T d1u6gc_ 622 RLTTVKALTLIAGSPLKI-------------------------------------------------DL-R--PVLGEGV 649 (1207)
T ss_dssp HHHHHHHHHHHTTCSSCC-------------------------------------------------CC-H--HHHHHHH
T ss_pred HHHHHHHHHHHHHhccch-------------------------------------------------hH-H--HHHHHHH
Confidence 666665554433211000 00 0 0112233
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhh
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSK 974 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~ 974 (2052)
+.+...+.+.+|..|..++..+..++......+.+..+..++..|...+.|.+..++..++.+++.++...+.....+..
T Consensus 650 ~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~ 729 (1207)
T d1u6gc_ 650 PILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISG 729 (1207)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTT
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHhccccchhHHHhhHHHhhccccccccHHHHHHHHHHHHHHHhhcchhhhhHHH
Confidence 45666778889999999999999999865444444444566677777889999999999999999999888888888888
Q ss_pred HHHHHHHHHhCCCc--HHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhh
Q 000146 975 GVLSDILKCLGDNK--KHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1052 (2052)
Q Consensus 975 ~llp~ll~~l~D~k--~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~l 1052 (2052)
.+++.++..+.+.. .....+....+..+..........+.+...+.+ .+...
T Consensus 730 ~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~-----------------~~~~~--------- 783 (1207)
T d1u6gc_ 730 SILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTG-----------------PVYSQ--------- 783 (1207)
T ss_dssp TTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHST-----------------TTTTC---------
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHH-----------------hhccc---------
Confidence 89998888776532 111122111111111110001111111111110 00000
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCC
Q 000146 1053 LKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGASQVSMGPTSKSSSKVPKSASN 1132 (2052)
Q Consensus 1053 l~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~~~~~~~~~~~~~~~~~~~~~ 1132 (2052)
...............|+..+....+.... ..+..+- .....
T Consensus 784 ------~~~~~~~~~~~~~~~~i~~l~~~~~~~~~-~~l~~~l-----------~~~~~--------------------- 824 (1207)
T d1u6gc_ 784 ------STALTHKQSYYSIAKCVAALTRACPKEGP-AVVGQFI-----------QDVKN--------------------- 824 (1207)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHSCCCSH-HHHTTTT-----------TTTTT---------------------
T ss_pred ------cchhhHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHH-----------HHHhc---------------------
Confidence 00111222333444555555555554321 1111110 00000
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhccccCCCchHHHhhhhhccccccCCChhHHHHHHHHHHhhhhH
Q 000146 1133 GVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFEDPRIEQIQELENDMMKYFRE 1212 (2052)
Q Consensus 1133 ~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~~pr~e~ve~L~~q~~~~~~~ 1212 (2052)
+ .. . .....-.+..+ +. ... .+......++. .
T Consensus 825 ----------~------~~---~-------~~~~~~al~~L---ge------~~~--~~~~~~~~~l~-----------~ 856 (1207)
T d1u6gc_ 825 ----------S------RS---T-------DSIRLLALLSL---GE------VGH--HIDLSGQLELK-----------S 856 (1207)
T ss_dssp ----------T------TC---C-------HHHHHHHHHHH---HH------HHH--HSCCCSCTHHH-----------H
T ss_pred ----------c------cc---h-------HHHHHHHHHHH---HH------HHH--hccccchHHHH-----------H
Confidence 0 00 0 00000000000 00 000 00000001111 1
Q ss_pred HHHHhhcCcCHHHHHHHHHHHHHhcCcChhhhHHHHHHHHHHHHHhhcCccHHHHHHHHhhHHHHHHHHHhcCCCCCHHh
Q 000146 1213 DLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELFDTLRDEGYSLTESE 1292 (2052)
Q Consensus 1213 ~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~~i~~lDlllk~l~lr~~dtN~~vl~k~Ld~l~~l~~~l~~~~y~l~~~E 1292 (2052)
.++..+.+.+..-|..|...|...... +.+..+..+...+ ++.+..-...|..+..+ +...+.......
T Consensus 857 ~l~~~l~~~~~~vr~aAa~aLg~l~~~-------~~~~~lp~il~~l-~~~~~~~~~ll~al~ei---~~~~~~~~~~~~ 925 (1207)
T d1u6gc_ 857 VILEAFSSPSEEVKSAASYALGSISVG-------NLPEYLPFVLQEI-TSQPKRQYLLLHSLKEI---ISSASVVGLKPY 925 (1207)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHH-------THHHHHHHHHHHH-HSCGGGHHHHHHHHHHH---HHSSCSTTTHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHh-------hHHHHhHHHHHHH-hcCchHHHHHHHHHHHH---HHhcchhhhHHH
Confidence 244455566667777776666544322 2222222221112 22222222233334433 333333334445
Q ss_pred HHhhhHHHHHhhCCChHHHHHHHHHHHHHHhhcCCccccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccccchH
Q 000146 1293 AAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSATKTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQLKSL 1372 (2052)
Q Consensus 1293 a~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~skvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~~K~l 1372 (2052)
+..+++.|+..+.+..+.+|+.+-+.+..++.++| ..++|.|.+.++++|+.+|..++..+.+++...|.......+.+
T Consensus 926 ~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~-~~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~~~~~~~~~l~~l 1004 (1207)
T d1u6gc_ 926 VENIWALLLKHCECAEEGTRNVVAECLGKLTLIDP-ETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNC 1004 (1207)
T ss_dssp HHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSG-GGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSCCTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 77788888888888899999999999999988776 56899999999999999999999999988877664321123343
Q ss_pred -HHHHHHhcCCChHHHHHHHHHHHHHHHHhChHHHHHhh
Q 000146 1373 -QIVASLTAERDGEIRKAALNTLATGYKILGEDIWRYVG 1410 (2052)
Q Consensus 1373 -~~ia~~i~drd~~VR~AAl~~l~~~y~~~G~~v~~~~g 1410 (2052)
+.+-..++|.|..||.+|+.+|..+...-+.-|..|+.
T Consensus 1005 i~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~ 1043 (1207)
T d1u6gc_ 1005 IGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLD 1043 (1207)
T ss_dssp STTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 45557789999999999999999887655555555543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1e-20 Score=247.21 Aligned_cols=552 Identities=18% Similarity=0.176 Sum_probs=361.2
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCC-CChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhH
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAP-GDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFL 406 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~-~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~l 406 (2052)
-+.+.+.+.+...|..|+..|..++..- .+ ..-.++++.|...++|.. .|...+++.++.++.-++. ..|+..+
T Consensus 14 ~l~~~l~~~~~~~R~~a~~~l~~ia~~l--g~~~~~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~~~~~~--~~~~~~l 88 (588)
T d1b3ua_ 14 VLIDELRNEDVQLRLNSIKKLSTIALAL--GVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLVGG--PEYVHCL 88 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHS--CHHHHHHTHHHHHHHTCCCCH-HHHHHHHHHHTTCSGGGTS--GGGGGGG
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHh--CcHhhHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHcCC--hhHHHHH
Confidence 4677899999999999999998776321 01 113568888888887654 3555555655555443322 2467888
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHH----HHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh
Q 000146 407 LPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDV----VEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH 482 (2052)
Q Consensus 407 lp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~l----l~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l 482 (2052)
+|.+...+.+..+.||+++..++..+... .+...+ ++.+..-.++.....|..++..+..+........ .
T Consensus 89 l~~l~~l~~~~~~~Vr~~a~~~l~~i~~~--~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~----~ 162 (588)
T d1b3ua_ 89 LPPLESLATVEETVVRDKAVESLRAISHE--HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV----K 162 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTT--SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH----H
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHH----H
Confidence 99998889999999999999999999875 343333 3333333455667889888888888777655433 3
Q ss_pred hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCC
Q 000146 483 KDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSV 562 (2052)
Q Consensus 483 ~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~ 562 (2052)
..+.+.+.+++.|.++.||.+|..+++.+.+.++.....+.+ -
T Consensus 163 ~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l---~---------------------------------- 205 (588)
T d1b3ua_ 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI---I---------------------------------- 205 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTH---H----------------------------------
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHH---H----------------------------------
Confidence 667888999999999999999999999998887744322111 0
Q ss_pred CCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCc
Q 000146 563 PSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIP 642 (2052)
Q Consensus 563 ~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~ 642 (2052)
T Consensus 206 -------------------------------------------------------------------------------- 205 (588)
T d1b3ua_ 206 -------------------------------------------------------------------------------- 205 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV 722 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~ 722 (2052)
+-+...+.+.+|..|..+++.+..+....+..+ ..+.++..+.. .+.|.+..|...+.+.+..++...+. .....
T Consensus 206 ~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~-~~~~i~~~l~~--~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~ 280 (588)
T d1b3ua_ 206 PMFSNLASDEQDSVRLLAVEACVNIAQLLPQED-LEALVMPTLRQ--AAEDKSWRVRYMVADKFTELQKAVGP--EITKT 280 (588)
T ss_dssp HHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH-HHHHTHHHHHH--HHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHH
T ss_pred HHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH-HHHHHHHHHHH--hcccccHHHHHHHHHhHHHHHHHhhh--hhhhh
Confidence 111222333444444444444443333221110 01111111111 12344444444444444444333211 01112
Q ss_pred HHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhChh--------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCC
Q 000146 723 LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGPG--------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH 792 (2052)
Q Consensus 723 ~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~--------~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~ 792 (2052)
.++|.+..-+.| ..+|..+...|..+++..+.. .+++.+... ..+.++.||..+...+..+...+|...
T Consensus 281 ~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~-~~d~~~~vr~~~~~~l~~~~~~~~~~~ 359 (588)
T d1b3ua_ 281 DLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL-VSDANQHVKSALASVIMGLSPILGKDN 359 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHH-HTCSCHHHHHHHHTTGGGGHHHHCHHH
T ss_pred hhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHh-hcCCChHHHHHHHHHHhhhhhccchhH
Confidence 234444433433 235666666666666554422 223333333 367888888888777777766666431
Q ss_pred CChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccc
Q 000146 793 LKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASES 872 (2052)
Q Consensus 793 l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~ 872 (2052)
....+++.+... +.+.++.||..+...++.+...+|..-
T Consensus 360 -~~~~l~p~l~~~-l~d~~~~v~~~~~~~l~~~~~~~~~~~--------------------------------------- 398 (588)
T d1b3ua_ 360 -TIEHLLPLFLAQ-LKDECPEVRLNIISNLDCVNEVIGIRQ--------------------------------------- 398 (588)
T ss_dssp -HHHHTHHHHHHH-HTCSCHHHHHHHHTTCHHHHHHSCHHH---------------------------------------
T ss_pred -HHHHHHHHHHHH-HHhhhhhhhhHHHHHHHHHHhhcchhh---------------------------------------
Confidence 234556666666 788888888888887776665554320
Q ss_pred cCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHH
Q 000146 873 TSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVM 952 (2052)
Q Consensus 873 ~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~ 952 (2052)
+...+.+.+...+.|.+|+.|..+++.+..++...+... ....+...+...+.|.+..|+.
T Consensus 399 ----------------~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~D~~~~VR~ 459 (588)
T d1b3ua_ 399 ----------------LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEF---FDEKLNSLCMAWLVDHVYAIRE 459 (588)
T ss_dssp ----------------HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGG---CCHHHHHHHHHGGGCSSHHHHH
T ss_pred ----------------hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHh---HHHHHHHHHHhhccCCchhHHH
Confidence 011133456666789999999999999999886422211 1256777788889999999999
Q ss_pred HHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc----hhhHHHHHHHHhcCccChhH
Q 000146 953 ATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL----DKMVPYVTTALTDAKLGAEG 1028 (2052)
Q Consensus 953 ~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l----~~ll~~l~~~L~~~k~np~~ 1028 (2052)
.|+.+++.++..+|+.+ ....++|.+...+.|++..+|.++..++..+...++. ..++|.+...+.++ .|.+
T Consensus 460 ~A~~~L~~l~~~~~~~~--~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~--v~nV 535 (588)
T d1b3ua_ 460 AATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDP--VANV 535 (588)
T ss_dssp HHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCS--CHHH
T ss_pred HHHHHHHHHHHHhCcHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCC--CHHH
Confidence 99999999999999874 3467889999999999999999999999999988764 45677777777776 5899
Q ss_pred HHHHHHHHHHHhccCCCCCchhhhHHHHH-hhcCCCCHHHHHHHHHHHHHH
Q 000146 1029 RKDLFDWLSKQLTGLSGFPDAAHLLKPAS-IAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1029 R~~~l~~L~~~l~~~~~~~~~~~ll~pl~-~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
|..++..|......... ......+.|++ ..++|.+.|||..|.+++..+
T Consensus 536 R~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 536 RFNVAKSLQKIGPILDN-STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHGGGSCH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCc-HhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999876555432 23445566644 456899999999999999764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=3.2e-18 Score=223.21 Aligned_cols=554 Identities=13% Similarity=0.112 Sum_probs=370.4
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHH
Q 000146 644 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVL 723 (2052)
Q Consensus 644 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~ 723 (2052)
-+++.|.|.+...|+.+++.|..+....+.. ...+.++.+|... +.|.. .|...+.+.+..++...+ ....+..
T Consensus 14 ~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~-~~~~~lip~l~~~--~~~~~-ev~~~~~~~l~~~~~~~~--~~~~~~~ 87 (588)
T d1b3ua_ 14 VLIDELRNEDVQLRLNSIKKLSTIALALGVE-RTRSELLPFLTDT--IYDED-EVLLALAEQLGTFTTLVG--GPEYVHC 87 (588)
T ss_dssp HHHHHTTCSCHHHHHHHHHTHHHHHHHSCHH-HHHHTHHHHHHHT--CCCCH-HHHHHHHHHHTTCSGGGT--SGGGGGG
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhCcH-hhHHHHHHHHHHH--hcCcH-HHHHHHHHHHHHHHHHcC--ChhHHHH
Confidence 3678999999999999999999887775442 2234566666542 34543 344333333322211110 2234555
Q ss_pred HHHHHHHhhhc--hhhhHHHHHHHHHHHhhhChhHHHHHHH---HHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhH
Q 000146 724 CLLGISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLY---KIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDL 798 (2052)
Q Consensus 724 il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~~~Vl~~L~---~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~l 798 (2052)
+++.+..-+.+ ..+|..|.++|..+++..++..+-..++ ..+.+......|..++..+..+...++.. ....+
T Consensus 88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~--~~~~l 165 (588)
T d1b3ua_ 88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA--VKAEL 165 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH--HHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHH--HHHHH
Confidence 66655444444 4689999999999999888776544443 34445666777877777666665433321 23457
Q ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCC
Q 000146 799 IDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSS 878 (2052)
Q Consensus 799 i~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~ 878 (2052)
++.+..+ ++|.++.||.+|...++.+...++....
T Consensus 166 ~~~~~~l-~~D~~~~VR~~a~~~l~~~~~~~~~~~~-------------------------------------------- 200 (588)
T d1b3ua_ 166 RQYFRNL-CSDDTPMVRRAAASKLGEFAKVLELDNV-------------------------------------------- 200 (588)
T ss_dssp HHHHHHH-HTCSCHHHHHHHHHHHHHHHHTSCHHHH--------------------------------------------
T ss_pred HHHHHHH-hccCCHHHHHHHHHHHHHHHHHhcHHHH--------------------------------------------
Confidence 7778888 8999999999999999998877653210
Q ss_pred CCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhhhccchHHHHHHHHHH
Q 000146 879 GGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLIT 957 (2052)
Q Consensus 879 ~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~aL~~rL~DsN~~V~~~Al~~ 957 (2052)
...|.+.+...+.|.+|.+|..+++.+..++... .... ...+++.+...+.|.+..|+..++++
T Consensus 201 -----------~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~----~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~ 265 (588)
T d1b3ua_ 201 -----------KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL----PQEDLEALVMPTLRQAAEDKSWRVRYMVADK 265 (588)
T ss_dssp -----------HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS----CHHHHHHHTHHHHHHHHTCSSHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccC----CHHHHHHHHHHHHHHhcccccHHHHHHHHHh
Confidence 0113345666678999999999999999988632 1111 24567888888999999999999999
Q ss_pred HHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc--------hhhHHHHHHHHhcCccChhHH
Q 000146 958 LGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL--------DKMVPYVTTALTDAKLGAEGR 1029 (2052)
Q Consensus 958 l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l--------~~ll~~l~~~L~~~k~np~~R 1029 (2052)
++.++..+++... ...++|.+...+.|....||..+..++..++..++. +.++|.+...+.+. ++.+|
T Consensus 266 l~~l~~~~~~~~~--~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~--~~~vr 341 (588)
T d1b3ua_ 266 FTELQKAVGPEIT--KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA--NQHVK 341 (588)
T ss_dssp HHHHHHHHCHHHH--HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS--CHHHH
T ss_pred HHHHHHHhhhhhh--hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCC--ChHHH
Confidence 9999999998753 357899999999999999999999999999987763 23444444544443 46666
Q ss_pred HHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhc
Q 000146 1030 KDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLN 1109 (2052)
Q Consensus 1030 ~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~ 1109 (2052)
..+...+.......+.......+++.+...+.|.+.+||..+..++..+...+|.+.+.+.
T Consensus 342 ~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~------------------- 402 (588)
T d1b3ua_ 342 SALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQS------------------- 402 (588)
T ss_dssp HHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHH-------------------
T ss_pred HHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhH-------------------
Confidence 6665554433222221111233444466666777777777766666555554443322211
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhccccCCCchHHHhhhhhccc
Q 000146 1110 GASQVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRF 1189 (2052)
Q Consensus 1110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~ 1189 (2052)
T Consensus 403 -------------------------------------------------------------------------------- 402 (588)
T d1b3ua_ 403 -------------------------------------------------------------------------------- 402 (588)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCcChhhhHHHHHHHHHHHHHhhcCccHHHHHH
Q 000146 1190 KFEDPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEVLDILLRWFVLQFCKSNTTCLLK 1269 (2052)
Q Consensus 1190 ~f~~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~~i~~lDlllk~l~lr~~dtN~~vl~k 1269 (2052)
+=+.+...+.+.+|+.|..+++.+...........+ .+.+..++...+.|++..|-..
T Consensus 403 --------------------ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~D~~~~VR~~ 460 (588)
T d1b3ua_ 403 --------------------LLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFF--DEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp --------------------HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGC--CHHHHHHHHHGGGCSSHHHHHH
T ss_pred --------------------HHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhH--HHHHHHHHHhhccCCchhHHHH
Confidence 011233445566777777777766655432221111 1222333333468999999999
Q ss_pred HHhhHHHHHHHHHhcCCCCCHHhHHhhhHHHHHhhCCChHHHHHHHHHHHHHHhhcCCc----cccHHHHHhhhcCCChh
Q 000146 1270 VLEFLPELFDTLRDEGYSLTESEAAVFLPCLVEKSGHNIEKVREKMRELTKQIVNFYSA----TKTLPYILEGLRSKNNR 1345 (2052)
Q Consensus 1270 ~Ld~l~~l~~~l~~~~y~l~~~Ea~~~lp~Lv~K~Gd~k~~vr~~v~~il~~~~~v~p~----skvf~~l~~gl~sKN~r 1345 (2052)
+++.|..++..+.. ++....++|.+...+.|+.-.+|...-..+..+...++. ..++|.|++.++.+.+.
T Consensus 461 A~~~L~~l~~~~~~------~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~n 534 (588)
T d1b3ua_ 461 ATSNLKKLVEKFGK------EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVAN 534 (588)
T ss_dssp HHHHHHHHHHHHCH------HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHHHhCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHH
Confidence 99999888776653 334567889999999998888888766666666555543 57899999999999999
Q ss_pred hHHHHHHHHHHHHHhhCCCcccccchHHHHHHHhcCCChHHHHHHHHHHHHH
Q 000146 1346 TRIECVDLVGFLIDHHGAEISGQLKSLQIVASLTAERDGEIRKAALNTLATG 1397 (2052)
Q Consensus 1346 ~R~ecl~~l~~li~~~G~~~~~~~K~l~~ia~~i~drd~~VR~AAl~~l~~~ 1397 (2052)
+|..++..|+.+...++-.. ...+-.+.+.++.+|.|.+||..|-.+|..+
T Consensus 535 VR~~a~~~l~~i~~~~~~~~-~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 535 VRFNVAKSLQKIGPILDNST-LQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHGGGSCHHH-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCcHh-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999876665321 1112237777888999999999999988653
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=3.8e-18 Score=234.07 Aligned_cols=716 Identities=14% Similarity=0.116 Sum_probs=436.5
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhh-----hhhhhHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhh---
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADAD-----AGRYAKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELE--- 163 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~-----~~~~~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~--- 163 (2052)
.+.+.+.+.+.|..+++.|+.+|...++..... .......+++.++.- +. ..+.+|..|+.++..++...
T Consensus 128 l~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~-~~~~~~~vr~~al~~l~~~~~~~~~~ 206 (888)
T d1qbkb_ 128 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQF-FKHSSPKIRSHAVACVNQFIISRTQA 206 (888)
T ss_dssp STTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTG-GGSSSSCSSSTTTHHHHGGGGCCCST
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHH-hhCCCHHHHHHHHHHHHHHHHhhhHH
Confidence 344455667777778888998887776543321 112334566777654 54 56778888888887666431
Q ss_pred ---hhhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCCcC-hHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhh-
Q 000146 164 ---AVDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKIIP-PKRILKMLPELFDHQDQNVRASSKGLTLELCRWI- 238 (2052)
Q Consensus 164 ---~~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~i~-~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~l- 238 (2052)
..+.+++.+.....+.+|+++..++.+|..++..+.....+ +..+++.+...+.|.|..||.+|.+++..+...-
T Consensus 207 ~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~ 286 (888)
T d1qbkb_ 207 LMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPI 286 (888)
T ss_dssp TCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGG
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhh
Confidence 12345556666677889999999999998887776665433 4567778888889999999999988765543221
Q ss_pred CCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCC----
Q 000146 239 GKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYEL---- 314 (2052)
Q Consensus 239 G~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl---- 314 (2052)
....+.+.+ ..+-|..++ ... ........... ... ......+...++.|.-.
T Consensus 287 ~~~~~~~~l-~~l~~~l~~-------~~~--~~~~~~~~~~~----------~~~----~~~~~~~~~~~i~~~~~~~~~ 342 (888)
T d1qbkb_ 287 CKDVLVRHL-PKLIPVLVN-------GMK--YSDIDIILLKG----------DVE----EDETIPDSEQDIRPRFHRSRT 342 (888)
T ss_dssp GTTTTTTST-TTTTTTTTT-------SSC--CSSTTHHHHTT----------TSS----CCTTSCCCGGGCCCCCCCCCC
T ss_pred hHHHHHHHH-HHHHHHHHH-------Hhh--cchHHHHHHhh----------hhh----hhhhhhhhHHHHHHHHHHHHH
Confidence 011111111 111111000 000 00000000000 000 00000000011111000
Q ss_pred ---CCcccccCcCcc--chhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHH
Q 000146 315 ---VDPVDILTPLEK--SGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIG 389 (2052)
Q Consensus 315 ---~~~vdIl~kl~~--~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~ 389 (2052)
....+.+..... .++.+......|.-|+.+...|..++... ...-+..++..+...+.+.+..++..|+.+++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~--~~~il~~~l~~l~~~l~s~~~~~reaa~~alg 420 (888)
T d1qbkb_ 343 VAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY--RDELLPHILPLLKELLFHHEWVVKESGILVLG 420 (888)
T ss_dssp CCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTC--CSSSHHHHHHHHHHTTTSSSHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhh--HHHHHHHHHHHHHHhhccchhHHHHHHHHHhh
Confidence 000000001110 11112233467999999888776665321 12336678888888899999999999999999
Q ss_pred HHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-CC----CHHHHHHHHHHHhhcCChHHHHHHHH
Q 000146 390 NLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAG-CL----NLVDVVEDVKTSVKNKVPLVRSLTLN 464 (2052)
Q Consensus 390 ~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~-~~----~l~~ll~~l~~~L~~Knp~vR~~~l~ 464 (2052)
.++.+....+.+|...++|.|+..+.|.++.||.++..++..++... .. .+..+++.+...+.+.++.|+..++.
T Consensus 421 ~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~ 500 (888)
T d1qbkb_ 421 AIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 500 (888)
T ss_dssp HHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHH
Confidence 99999888889999999999999999999999999999998777641 11 24568888889999999999999999
Q ss_pred HHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhH-HHhHhhccHHHHHHHHHHHhcCC
Q 000146 465 WVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPL-ERSIEKLDDVRRNKLSEMIAGSG 543 (2052)
Q Consensus 465 ~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~-~~~l~~Ld~~k~kkI~e~~~~~~ 543 (2052)
.|..+.+.... .+.++++.+++.+..++.+.+..++..+.++++++...+|+... ..+++.|-+. +.+......
T Consensus 501 al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~~~~ 575 (888)
T d1qbkb_ 501 AFATLEEEACT-ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPP----LIQKWNMLK 575 (888)
T ss_dssp HHHHHHHHHTT-SSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHH----HHHHHTTSC
T ss_pred HHHHHHHHhhh-hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH----HHHHHHhcc
Confidence 99998876654 35678899999999999999999999999999999988885421 2233322111 111110000
Q ss_pred CCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCC
Q 000146 544 GDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDV 623 (2052)
Q Consensus 544 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~ 623 (2052)
+.
T Consensus 576 --------------------------------------------------------------------------~~---- 577 (888)
T d1qbkb_ 576 --------------------------------------------------------------------------DE---- 577 (888)
T ss_dssp --------------------------------------------------------------------------TT----
T ss_pred --------------------------------------------------------------------------cc----
Confidence 00
Q ss_pred CCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 000146 624 EPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVI 703 (2052)
Q Consensus 624 ~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~L 703 (2052)
.. . +...++.+. .++..+. .++......+.+..+
T Consensus 578 -~~--~---------------------------~~~~le~l~--------------~i~~~~~--~~~~~~~~~~~~~~~ 611 (888)
T d1qbkb_ 578 -DK--D---------------------------LFPLLECLS--------------SVATALQ--SGFLPYCEPVYQRCV 611 (888)
T ss_dssp -CT--T---------------------------HHHHHHHHH--------------HHHHHST--TTTHHHHHHHHHHHH
T ss_pred -hH--H---------------------------HHHHHHHHH--------------HHHHHhH--HHHhhhHHHHHHHHH
Confidence 00 0 001111111 1111111 011111111112111
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 000146 704 EVINYLAATATKFPKKCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVS 783 (2052)
Q Consensus 704 e~l~~l~~~~~~~~~~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~ 783 (2052)
.++...... .+...................++..++.
T Consensus 612 ~~l~~~l~~-------------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 648 (888)
T d1qbkb_ 612 NLVQKTLAQ-------------------------------------------AMLNNAQPDQYEAPDKDFMIVALDLLSG 648 (888)
T ss_dssp HHHHHHHHH-------------------------------------------HHHHHHCTTTSCCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------------------------HHHHhcccccccchhHHHHHHHHHHHHH
Confidence 111100000 0000000000112233344455556666
Q ss_pred HHHHhCCCCCC---hHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCC
Q 000146 784 AVEDFGVSHLK---LKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGT 860 (2052)
Q Consensus 784 ~i~~fG~~~l~---~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~ 860 (2052)
+++.+|....+ ...++..+..+ +.+.++.||..|..+++.|....++.+..|+
T Consensus 649 l~~~l~~~~~~~~~~~~l~~~l~~~-l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l----------------------- 704 (888)
T d1qbkb_ 649 LAEGLGGNIEQLVARSNILTLMYQC-MQDKMPEVRQSSFALLGDLTKACFQHVKPCI----------------------- 704 (888)
T ss_dssp HHHHHTTTTHHHHHTSCHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-----------------------
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHH-hCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-----------------------
Confidence 66666653211 11355555565 7888888888888888888776665444333
Q ss_pred CCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHH
Q 000146 861 VVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLR 940 (2052)
Q Consensus 861 p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~ 940 (2052)
.+++..|.
T Consensus 705 ------------------------------------------------------------------------~~~~~~l~ 712 (888)
T d1qbkb_ 705 ------------------------------------------------------------------------ADFMPILG 712 (888)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 22333334
Q ss_pred hhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHhcC------chhhH
Q 000146 941 GRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN--KKHMRECTLTVLDAWLAAVH------LDKMV 1012 (2052)
Q Consensus 941 ~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~--k~~VR~aa~~aL~~i~~~~~------l~~ll 1012 (2052)
..|.+.+..|+..|+.++|.|+..+|..|.+|+..+++.++..+.+. +..|++.+..||+.++..++ ++.++
T Consensus 713 ~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~ 792 (888)
T d1qbkb_ 713 TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFI 792 (888)
T ss_dssp HTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTH
T ss_pred HHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHH
Confidence 44455556677788888999999999999999999999999999864 45688888899999887664 56677
Q ss_pred HHHHHHHhcCccChhHHHHHHHHHHHHhccCCCC--CchhhhHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcChhHHHHH
Q 000146 1013 PYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKSSDVRKAAEACIVEILRAGGQETIEKN 1090 (2052)
Q Consensus 1013 ~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~~ 1090 (2052)
+.+...|.... +.+.|..++..+...+...+.. +++..++. .+....+..++++......|..+...+|.+.....
T Consensus 793 ~~~~~~l~~~~-d~~ek~~~~~g~~~~i~~~p~~~~~~l~~~~~-~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~ 870 (888)
T d1qbkb_ 793 RPWCTSLRNIR-DNEEKDSAFRGICTMISVNPSGVIQDFIFFCD-AVASWINPKDDLRDMFCKILHGFKNQVGDENWRRF 870 (888)
T ss_dssp HHHHHHHTTSC-CSHHHHHHHHHHHHHHHHCGGGTGGGHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHhccCC-CcHHHHHHHHHHHHHHHHCcHHHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHH
Confidence 77888887533 3456888888888777654431 22222333 33345667899999999999999999999888899
Q ss_pred hccCChHHHHHHHHH
Q 000146 1091 LKDIQGPALALILER 1105 (2052)
Q Consensus 1091 l~~L~~~~~~~I~~~ 1105 (2052)
+.+|+|..+.++...
T Consensus 871 ~~~~~~~~~~~l~~~ 885 (888)
T d1qbkb_ 871 SDQFPLPLKERLAAF 885 (888)
T ss_dssp HHSSCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHh
Confidence 999999998888764
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=1.8e-11 Score=164.18 Aligned_cols=677 Identities=13% Similarity=0.083 Sum_probs=407.1
Q ss_pred hhcC-CChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhccC-hhhHHHHHHHHHHHHHHhCCCCcC----hHHHH
Q 000146 140 KCLT-GRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNKV-AKAVVPAIDVMFQALSEFGAKIIP----PKRIL 209 (2052)
Q Consensus 140 K~L~-~r~~tk~~A~~~~l~~~e~~~~----~~v~e~Ll~~l~~K~-PKvv~~~l~~L~~~l~~FG~~~i~----~k~il 209 (2052)
++|. ..+.+|..+-.++..++..+-+ ..+++.|...+.+.+ +.++.+++.+|..+++.++...-. +.+++
T Consensus 102 ~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il 181 (861)
T d2bpta1 102 TALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNIL 181 (861)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3455 5788888888888877766533 257777777766544 567888999999998888774322 33455
Q ss_pred hhhhhhh--CCCChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhc
Q 000146 210 KMLPELF--DHQDQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQE 287 (2052)
Q Consensus 210 ~~l~~ll--~~~dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~ 287 (2052)
..+...+ .+.+..||..+...+..+..+++.. +.. ....+..++
T Consensus 182 ~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~-~~~---~~~~~~~~~------------------------------ 227 (861)
T d2bpta1 182 IAIVQGAQSTETSKAVRLAALNALADSLIFIKNN-MER---EGERNYLMQ------------------------------ 227 (861)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHH-HTS---HHHHHHHHH------------------------------
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHh-HHh---hhhhhHHHH------------------------------
Confidence 5554444 3556789999998888777776421 100 000001111
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCCCCCChHHHH
Q 000146 288 LISEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGDFTEVC 366 (2052)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~dy~~l~ 366 (2052)
-+.+.+.+.+|+.|..+++.+..++. .++.....+..++
T Consensus 228 ----------------------------------------~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l 267 (861)
T d2bpta1 228 ----------------------------------------VVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL 267 (861)
T ss_dssp ----------------------------------------HHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTH
T ss_pred ----------------------------------------hHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222344557778888888888773 3322222223333
Q ss_pred HH-HHHHhcCcCHHHHHHHHHHHHHHHHHhhh-----------------cchhhhhhHHHHHHHHhccC-------cHHH
Q 000146 367 RT-LKKLITDVNIAVAVEAIQAIGNLARGLRT-----------------HFSGSSRFLLPVLLEKLKEK-------KPTV 421 (2052)
Q Consensus 367 ~~-L~k~l~D~N~~V~~~A~~~l~~La~~L~~-----------------~f~~~~~~llp~LL~klkdk-------K~~V 421 (2052)
.. +....++.+..++..++..+..++..... -..++...++|.++..+.+. ...+
T Consensus 268 ~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~ 347 (861)
T d2bpta1 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNV 347 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH
Confidence 33 33445588888999999888887754221 01345666777777777543 3468
Q ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHH
Q 000146 422 AESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEV 500 (2052)
Q Consensus 422 ~~aa~~aL~ai~~~-~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~V 500 (2052)
+.++..+++.++.. +..-++.+++.+...+.+.+|..|..++..+..+........+.++++.+++.+..++.|.++.|
T Consensus 348 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~v 427 (861)
T d2bpta1 348 SMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQV 427 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhh
Confidence 88888999988875 11224555666666778899999999999998888777766677888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCChhHH-HhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhcc
Q 000146 501 RDAAFSVLAAIAKSVGMRPLE-RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAAS 579 (2052)
Q Consensus 501 R~aA~~~l~~l~~~~Ge~~~~-~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s 579 (2052)
|.++..+++.+...++..... .++..+ ...+....
T Consensus 428 r~~a~~~l~~l~~~~~~~~~~~~~~~~l----l~~l~~~~---------------------------------------- 463 (861)
T d2bpta1 428 KETTAWCIGRIADSVAESIDPQQHLPGV----VQACLIGL---------------------------------------- 463 (861)
T ss_dssp HHHHHHHHHHHHHHHGGGSCTTTTHHHH----HHHHHHHH----------------------------------------
T ss_pred hhHHHHHHHHHHHHhchhhhhHHhhhhh----hHHHHhcc----------------------------------------
Confidence 999999999998877642110 011111 00111100
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHH
Q 000146 580 MLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLE 659 (2052)
Q Consensus 580 ~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ 659 (2052)
. .+-+.+..
T Consensus 464 ----------------------------------------------------------------------~-~~~~~~~~ 472 (861)
T d2bpta1 464 ----------------------------------------------------------------------Q-DHPKVATN 472 (861)
T ss_dssp ----------------------------------------------------------------------T-SCHHHHHH
T ss_pred ----------------------------------------------------------------------c-cChHHHHH
Confidence 0 01111111
Q ss_pred HHHHHHHHHHhcc-----ccchH----HHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHHHHHHHHHH
Q 000146 660 AISSLRQQVEAVQ-----NLDQS----VEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVVLCLLGISE 730 (2052)
Q Consensus 660 ale~L~~~v~~~~-----~~~~~----~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~~il~~Lve 730 (2052)
+...+...+.... ..... ...++.... -.+....+...+++++..++...+.-....+..+++.+..
T Consensus 473 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~ 548 (861)
T d2bpta1 473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAAN----RIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMD 548 (861)
T ss_dssp HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHT----CSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccchhhHHHhhHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 1111111111100 00011 112222221 1334445777778888887777554333334444444333
Q ss_pred hhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC-hHhHHHHHHhhCC-C
Q 000146 731 RVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK-LKDLIDFCKDTGL-Q 808 (2052)
Q Consensus 731 Klgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~-~k~li~~l~~~gL-~ 808 (2052)
.+... ....... +.... ......++..++..+..++..++....+ ...++..+... + .
T Consensus 549 ~l~~~-------------~~~~~~~-~~~~~-----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~-l~~ 608 (861)
T d2bpta1 549 KLGQT-------------MSVDENQ-LTLED-----AQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRL-LEK 608 (861)
T ss_dssp HHHHH-------------TTSCGGG-CCHHH-----HHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHH-HHS
T ss_pred HHHHH-------------HHHHhhh-hhhhH-----HhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhh-ccc
Confidence 32211 0000000 00000 0001123445555666666655543222 34566665554 4 3
Q ss_pred CCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCccc
Q 000146 809 SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPRED 888 (2052)
Q Consensus 809 ~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~d 888 (2052)
..+..||..+..+++.+...+|+.+.+|+..+-|.
T Consensus 609 ~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~--------------------------------------------- 643 (861)
T d2bpta1 609 KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPY--------------------------------------------- 643 (861)
T ss_dssp TTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHH---------------------------------------------
T ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhH---------------------------------------------
Confidence 45678999999999999999998887777554443
Q ss_pred ccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHhC
Q 000146 889 ISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDS--NKNLVMATLITLGAVASAMG 966 (2052)
Q Consensus 889 Is~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~Ds--N~~V~~~Al~~l~~la~alg 966 (2052)
++..+.+.++.+|..|+..+..+.......+.+. ..+++..|...+.+. +..+...++.+++.++..+|
T Consensus 644 --------l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~-~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~ 714 (861)
T d2bpta1 644 --------LLKALNQVDSPVSITAVGFIADISNSLEEDFRRY-SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIG 714 (861)
T ss_dssp --------HHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHH-HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHG
T ss_pred --------HHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344455566788899999999887543444443 378889999988764 56788999999999999999
Q ss_pred hhhHHhhhHHHHHHHHHhCCCc-----------HHHHHHHHHHHHHHHHhcC-----chhhHHHHHHH----HhcCc--c
Q 000146 967 PAVEKSSKGVLSDILKCLGDNK-----------KHMRECTLTVLDAWLAAVH-----LDKMVPYVTTA----LTDAK--L 1024 (2052)
Q Consensus 967 ~~~~~~~~~llp~ll~~l~D~k-----------~~VR~aa~~aL~~i~~~~~-----l~~ll~~l~~~----L~~~k--~ 1024 (2052)
..|.+|+..+++.+.+.+.... ..+|+++..++..++.... +..+++.+... +.+.. .
T Consensus 715 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~p~~~~i~~~i~~~~~~~~~~~ 794 (861)
T d2bpta1 715 ADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYS 794 (861)
T ss_dssp GGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCccCC
Confidence 9999999999999998886543 2478888888888877553 22234433333 33221 1
Q ss_pred ChhHHHHHHHHHHHHhccCCCC--C-ch-hhhHHH-HHhhc--CCCCHHHHHHHHHHHHHHHHHcC
Q 000146 1025 GAEGRKDLFDWLSKQLTGLSGF--P-DA-AHLLKP-ASIAM--TDKSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1025 np~~R~~~l~~L~~~l~~~~~~--~-~~-~~ll~p-l~~~L--~D~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
....+..+++.+......++.. . .. .+.+.. +..+. .+.+...|..|..+...+-+.+|
T Consensus 795 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 860 (861)
T d2bpta1 795 EDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTRSGQLFSQATKDTARWAREQQKRQLS 860 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHCcchhHHHHHhhHHHHHHHHHHHhCcchhHHHHHHHHHHHHHHHHHhC
Confidence 2445666666666555555432 1 11 234444 33444 55677888988888887777665
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.1e-17 Score=229.26 Aligned_cols=614 Identities=10% Similarity=0.087 Sum_probs=380.6
Q ss_pred hHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcC----
Q 000146 362 FTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGC---- 437 (2052)
Q Consensus 362 y~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~---- 437 (2052)
...++..+...+.+.+..|+..|++|+..+.......+..+...+++.++..+.+..+.||..+..++..++....
T Consensus 170 ~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~ 249 (888)
T d1qbkb_ 170 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 249 (888)
T ss_dssp STTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHHHHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTT
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHH
Confidence 3446677778888888888999999999888777777788889999999999999999999999888887765311
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhc-ChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 438 LNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETS-SKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVG 516 (2052)
Q Consensus 438 ~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~-~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~G 516 (2052)
..+..+++.++..+++.+..++.+++.|+..+.+.. ....+.++++.++|.+...+.++..++.......... ....
T Consensus 250 ~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~ 327 (888)
T d1qbkb_ 250 PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEED--ETIP 327 (888)
T ss_dssp TTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCC--TTSC
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhh--hhhh
Confidence 234566676777888999999999998876654332 1223446678888888888777776654322110000 0000
Q ss_pred C--hhHHHhH--------hhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhhccccCCCCC
Q 000146 517 M--RPLERSI--------EKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSAASMLSGKRP 586 (2052)
Q Consensus 517 e--~~~~~~l--------~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P 586 (2052)
. ..+.+.+ ..........-.+.-+......... -.+++.+......-
T Consensus 328 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~r~~a~~~L~~l-- 384 (888)
T d1qbkb_ 328 DSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISD---------------------WNLRKCSAAALDVL-- 384 (888)
T ss_dssp CCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSC---------------------CSSHHHHHHHSTTT--
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhh---------------------hhHHHHHHHHHhhH--
Confidence 0 0000000 0000000000011112111000000 00011100000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHHHHHHHHHHH
Q 000146 587 VSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKERLEAISSLRQ 666 (2052)
Q Consensus 587 ~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~ 666 (2052)
... . +..+ .+. +-+-+.+.+.|.+|+.|.+|+..|..
T Consensus 385 ------------------------------~~~---~-~~~i-l~~--------~l~~l~~~l~s~~~~~reaa~~alg~ 421 (888)
T d1qbkb_ 385 ------------------------------ANV---Y-RDEL-LPH--------ILPLLKELLFHHEWVVKESGILVLGA 421 (888)
T ss_dssp ------------------------------TTT---C-CSSS-HHH--------HHHHHHHTTTSSSHHHHHHHHHHHHH
T ss_pred ------------------------------hhh---h-HHHH-HHH--------HHHHHHHhhccchhHHHHHHHHHhhh
Confidence 000 0 0001 011 11345677889999999999998887
Q ss_pred HHHhc-cccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHc-CCCchhhHHHHHHHHHHhhhc--hhhhHHHH
Q 000146 667 QVEAV-QNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATA-TKFPKKCVVLCLLGISERVAD--IKTRAHAM 742 (2052)
Q Consensus 667 ~v~~~-~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~-~~~~~~~~~~il~~LveKlgd--~K~r~~a~ 742 (2052)
+.++. .......+.++.++.. .++|.+..|...++.++..+++.. ..........+++.++..+.| .+++..|.
T Consensus 422 i~eg~~~~~~~~l~~li~~l~~--~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~ 499 (888)
T d1qbkb_ 422 IAEGCMQGMIPYLPELIPHLIQ--CLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAAC 499 (888)
T ss_dssp HTTTSHHHHTTTHHHHHHHHHH--HTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHH
T ss_pred hhhhHHHHhcccchhhhHHHHH--hccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 65441 1112223444555432 368999999999999998887654 333444566788999988877 46899999
Q ss_pred HHHHHHHhhhChh------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCC---hHhHHHHHHhh--CCCCCc
Q 000146 743 KCLTTFSEAVGPG------FIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLK---LKDLIDFCKDT--GLQSSA 811 (2052)
Q Consensus 743 e~L~~l~E~~~~~------~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~---~k~li~~l~~~--gL~~~n 811 (2052)
.+|..+++..+.. .+++.+...+ +....+.+...+..+..++...|..... ...+++.+... .+.+.+
T Consensus 500 ~al~~l~~~~~~~l~p~~~~il~~l~~~l-~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 578 (888)
T d1qbkb_ 500 SAFATLEEEACTELVPYLAYILDTLVFAF-SKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED 578 (888)
T ss_dssp HHHHHHHHHHTTSSGGGHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccch
Confidence 9999999876642 3444454443 4455666666666777776665543211 12233333221 134444
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccc
Q 000146 812 AATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISG 891 (2052)
Q Consensus 812 ~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~ 891 (2052)
+. +.....++..+....|..+..|...+-+..+..+...+..... ..... +.
T Consensus 579 ~~-~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~------------~~-------- 630 (888)
T d1qbkb_ 579 KD-LFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAML-------NNAQP------------DQ-------- 630 (888)
T ss_dssp TT-HHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCT------------TT--------
T ss_pred HH-HHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHH-------Hhccc------------cc--------
Confidence 43 4456788888989999888877766555555555544321100 00000 00
Q ss_pred cccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhH
Q 000146 892 KFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVE 970 (2052)
Q Consensus 892 ~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~ 970 (2052)
....+......+++.+..+++.....+.+-. ...++..+...+.|.+..|++.|+.+++.++..++..+.
T Consensus 631 ---------~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~ 701 (888)
T d1qbkb_ 631 ---------YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVK 701 (888)
T ss_dssp ---------SCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTG
T ss_pred ---------ccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHH
Confidence 0011112233455666666653323332211 134778888899999999999999999999999999999
Q ss_pred HhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCC
Q 000146 971 KSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLS 1044 (2052)
Q Consensus 971 ~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~ 1044 (2052)
+|+..+++.+++.|.+....|+..+..+++.++.+.| ++.+++.+...|.+++.+..++..++..+.+.....+
T Consensus 702 ~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p 781 (888)
T d1qbkb_ 702 PCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCP 781 (888)
T ss_dssp GGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCH
Confidence 9999999999999999999999999999999998876 3456667777787766556688888888877655544
Q ss_pred C--CCchhhhHHHHHhhcCC-CCHHHHHHHHHHHHHHHHHcC
Q 000146 1045 G--FPDAAHLLKPASIAMTD-KSSDVRKAAEACIVEILRAGG 1083 (2052)
Q Consensus 1045 ~--~~~~~~ll~pl~~~L~D-~~~dVRkaA~~~L~~l~~~~G 1083 (2052)
. .+.+..++.+++..|.+ ++.+-+..|..++..++..-+
T Consensus 782 ~~~~~~l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p 823 (888)
T d1qbkb_ 782 QEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP 823 (888)
T ss_dssp HHHGGGGGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG
T ss_pred HHHHhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc
Confidence 3 34667788888888755 355668888888888776544
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=5.8e-12 Score=169.09 Aligned_cols=607 Identities=12% Similarity=0.122 Sum_probs=384.0
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh---hhhHHHHHHHH
Q 000146 338 WSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS---SRFLLPVLLEK 413 (2052)
Q Consensus 338 WkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~---~~~llp~LL~k 413 (2052)
=..|..+...+..++.. .+..+.+.++++.|...+. +.+..++..|+.+++.++..++..+.++ ...+++.++..
T Consensus 109 ~~vr~~~a~~i~~i~~~-~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~ 187 (861)
T d2bpta1 109 PRIANAAAQLIAAIADI-ELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQG 187 (861)
T ss_dssp HHHHHHHHHHHHHHHHH-HGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666655421 0112346789999988887 5556788889999999999888766544 45666777766
Q ss_pred h--ccCcHHHHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhh
Q 000146 414 L--KEKKPTVAESLTQTLQAMHKAGCLN-------LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKD 484 (2052)
Q Consensus 414 l--kdkK~~V~~aa~~aL~ai~~~~~~~-------l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~ 484 (2052)
+ .+....|+..+..++..++.. ..+ ...+++.+...+++.++.+|..++..+..++..++.. +.+++..
T Consensus 188 ~~~~~~~~~v~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-~~~~l~~ 265 (861)
T d2bpta1 188 AQSTETSKAVRLAALNALADSLIF-IKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF-MKPYMEQ 265 (861)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHGGG-CHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG-CHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHHHHHH-HhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 6 345678999999998887765 111 2446667778889999999999999999988876543 4455555
Q ss_pred HH-HHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCC
Q 000146 485 YV-PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVP 563 (2052)
Q Consensus 485 l~-p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~ 563 (2052)
++ ..+.....+.++.||..+.+.+..+....... ......... . ...
T Consensus 266 ~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~----------------~~~~~~~~~-~--------~~~------- 313 (861)
T d2bpta1 266 ALYALTIATMKSPNDKVASMTVEFWSTICEEEIDI----------------AYELAQFPQ-S--------PLQ------- 313 (861)
T ss_dssp THHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHCTT-C--------SCC-------
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH----------------HHHHHhhhh-h--------HHH-------
Confidence 44 44567778999999999999887765442110 001100000 0 000
Q ss_pred CCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCH---HHHHHHhhcc
Q 000146 564 SVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSL---EEIESRLGSL 640 (2052)
Q Consensus 564 ~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~---ee~e~~~~~l 640 (2052)
...+.. +++...+...
T Consensus 314 -------------------------------------------------------------~~~~~~~~l~~i~~~l~~~ 332 (861)
T d2bpta1 314 -------------------------------------------------------------SYNFALSSIKDVVPNLLNL 332 (861)
T ss_dssp -------------------------------------------------------------CCCHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 000000 0000000000
Q ss_pred CcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC-Cchh
Q 000146 641 IPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK-FPKK 719 (2052)
Q Consensus 641 l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~-~~~~ 719 (2052)
+. .......+.+|..|..+...+.......+.. ....+..++.. .+...+..+...++..+..+++.+.. ....
T Consensus 333 l~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~ 407 (861)
T d2bpta1 333 LT-RQNEDPEDDDWNVSMSAGACLQLFAQNCGNH--ILEPVLEFVEQ--NITADNWRNREAAVMAFGSIMDGPDKVQRTY 407 (861)
T ss_dssp TT-CCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG--GHHHHHHHHHH--HTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred HH-HhhccccchhHHHHHHHHHHHHHHHhhcchh--hhhhhcchhhh--hhhhHHHHHHHHHHHHHHHHHhhcchhhHHH
Confidence 00 0000112346777877777776666553321 22333333321 24556667777777777665543221 1234
Q ss_pred hHHHHHHHHHHhhhch--hhhHHHHHHHHHHHhhhChh----HHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHHhCCC
Q 000146 720 CVVLCLLGISERVADI--KTRAHAMKCLTTFSEAVGPG----FIFERLYKIMK--DHKNPKVLSEGILWMVSAVEDFGVS 791 (2052)
Q Consensus 720 ~~~~il~~LveKlgd~--K~r~~a~e~L~~l~E~~~~~----~Vl~~L~~~l~--~~KnpKv~~e~L~~L~~~i~~fG~~ 791 (2052)
.+..+++.++..+.|. .+|..+..++..+++..++. ..+..++..+. ...+++++..++..+..++..+...
T Consensus 408 ~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 487 (861)
T d2bpta1 408 YVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEA 487 (861)
T ss_dssp HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhc
Confidence 5667888888888774 68999999999998876542 22333333332 3568888888888888887766543
Q ss_pred CCC-----hHhHHHHHHhh-CCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCcc
Q 000146 792 HLK-----LKDLIDFCKDT-GLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKK 865 (2052)
Q Consensus 792 ~l~-----~k~li~~l~~~-gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r 865 (2052)
... ...++..+... .-.+.+..+|..+..++..+....+..+..++..+.+.....+...+.....
T Consensus 488 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~-------- 559 (861)
T d2bpta1 488 TPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDEN-------- 559 (861)
T ss_dssp SSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGG--------
T ss_pred ccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------
Confidence 221 22333333222 1245677899999999999999999998888877777777666654322100
Q ss_pred ccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhcc
Q 000146 866 TVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYD 945 (2052)
Q Consensus 866 ~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~D 945 (2052)
. +.... ....+..+......+..++......+.+. ..+++..+...+.+
T Consensus 560 ~--------------------------~~~~~----~~~~~~l~~~~~~~l~~~~~~~~~~~~~~-~~~l~~~l~~~l~~ 608 (861)
T d2bpta1 560 Q--------------------------LTLED----AQSLQELQSNILTVLAAVIRKSPSSVEPV-ADMLMGLFFRLLEK 608 (861)
T ss_dssp G--------------------------CCHHH----HHHHHHHHHHHHHHHHHHHHHCGGGTGGG-HHHHHHHHHHHHHS
T ss_pred h--------------------------hhhhH----HhHHHHHHHHHHHHHHHHHhcchhhHHHH-HHHHHHHHhhhccc
Confidence 0 00000 00123445666667777776543334433 36788888888855
Q ss_pred c-hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC------chhhHHHHHHH
Q 000146 946 S-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH------LDKMVPYVTTA 1018 (2052)
Q Consensus 946 s-N~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~------l~~ll~~l~~~ 1018 (2052)
. ...++..++.+++.++..+|..|.+|+..++|.++..+.|....||..+..++..+...++ .+.+++.+...
T Consensus 609 ~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~~~~~~~~i~~~L~~~ 688 (861)
T d2bpta1 609 KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQM 688 (861)
T ss_dssp TTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhHhhHHHHHHHHHHH
Confidence 4 4567888999999999999999999999999999999999999999999999999998876 24566677777
Q ss_pred HhcCccChhHHHHHHHHHHHHhccCCCC--CchhhhHHHHHhhcCCCC-----------HHHHHHHHHHHHHHHHHcCh
Q 000146 1019 LTDAKLGAEGRKDLFDWLSKQLTGLSGF--PDAAHLLKPASIAMTDKS-----------SDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1019 L~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~~~ll~pl~~~L~D~~-----------~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
+++...++.+|..++..+...+...+.. +.+..++..+.+.+.... .+||+++..++..++..++.
T Consensus 689 l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~ 767 (861)
T d2bpta1 689 ISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD 767 (861)
T ss_dssp HHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7766556788988888887766555431 122334444555543322 35788999888888776653
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=9.8e-10 Score=147.60 Aligned_cols=673 Identities=14% Similarity=0.118 Sum_probs=375.9
Q ss_pred hhcCCChhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHhhcc--ChhhHHHHHHHHHHHHHHhCCCCc--ChHHHHhh
Q 000146 140 KCLTGRPKTVEKAQAVFMLWVELEAV----DVFLDVMEKAIKNK--VAKAVVPAIDVMFQALSEFGAKII--PPKRILKM 211 (2052)
Q Consensus 140 K~L~~r~~tk~~A~~~~l~~~e~~~~----~~v~e~Ll~~l~~K--~PKvv~~~l~~L~~~l~~FG~~~i--~~k~il~~ 211 (2052)
.++.+...++..+.+++..++..+-+ ..+++.|...+.+. .+.++.+++.+|..+++.++...+ ....+++.
T Consensus 97 ~~l~~~~~~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~ 176 (876)
T d1qgra_ 97 HTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA 176 (876)
T ss_dssp HHTTTCCSSSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 33543223333444555555544322 35777777766543 366788888888888887765332 23456777
Q ss_pred hhhhhCCC--ChhHHHHHHHHHHHHHHhhCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhccc
Q 000146 212 LPELFDHQ--DQNVRASSKGLTLELCRWIGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELI 289 (2052)
Q Consensus 212 l~~ll~~~--dk~VR~~a~~l~vely~~lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~ 289 (2052)
+...+.+. +..||..+...+..+..++.. .. . .......+-
T Consensus 177 i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~-----~~-~--~~~~~~~i~----------------------------- 219 (876)
T d1qgra_ 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKA-----NF-D--KESERHFIM----------------------------- 219 (876)
T ss_dssp HHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH-----HH-T--SHHHHHHHH-----------------------------
T ss_pred HHHHHcCcCccHHHHHHHHHHHHHHHHHhhh-----hh-h--HHHHHHHHH-----------------------------
Confidence 77766543 457888877776665554421 10 0 000000010
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCccchhhhhcccCChHHHHHHHHHHHHHhc-CCCCCCCC-hHHHHH
Q 000146 290 SEDVGPGPSEESTADVPPEIDEYELVDPVDILTPLEKSGFWEGVKATKWSERKDAVAELTKLAS-TKRIAPGD-FTEVCR 367 (2052)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~-~~ki~~~d-y~~l~~ 367 (2052)
..+...+.+.+|+.|+.+++.|..++. .+...... ...+..
T Consensus 220 -------------------------------------~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~ 262 (876)
T d1qgra_ 220 -------------------------------------QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA 262 (876)
T ss_dssp -------------------------------------HHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH
T ss_pred -------------------------------------HHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 112222344567778888888888774 33322111 123455
Q ss_pred HHHHHhcCcCHHHHHHHHHHHHHHHHHhhh--------------------cc-hhhhhhHHHHHHHHhcc-------CcH
Q 000146 368 TLKKLITDVNIAVAVEAIQAIGNLARGLRT--------------------HF-SGSSRFLLPVLLEKLKE-------KKP 419 (2052)
Q Consensus 368 ~L~k~l~D~N~~V~~~A~~~l~~La~~L~~--------------------~f-~~~~~~llp~LL~klkd-------kK~ 419 (2052)
.+...+.+.+..++..++..+..++..... .+ ..+...++|.+...+.. ...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 342 (876)
T d1qgra_ 263 ITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDW 342 (876)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCC
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccc
Confidence 566666777888888888877777652110 11 23344555666555432 233
Q ss_pred HHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCCh
Q 000146 420 TVAESLTQTLQAMHKA-GCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTP 498 (2052)
Q Consensus 420 ~V~~aa~~aL~ai~~~-~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~ 498 (2052)
.++.++..++..+... +..-++.+++.+...+.+.+|..|..++..+..+........+..++..+++.+...+.|.++
T Consensus 343 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~ 422 (876)
T d1qgra_ 343 NPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSV 422 (876)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 5888999999998876 112356677778888889999999999988888777666666778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCChhHH-HhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCCCCcchhhhhhh
Q 000146 499 EVRDAAFSVLAAIAKSVGMRPLE-RSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVEASESSFVRKSA 577 (2052)
Q Consensus 499 ~VR~aA~~~l~~l~~~~Ge~~~~-~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 577 (2052)
.||.+|..+++.+...+++.... .++..+- ..+...+
T Consensus 423 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~----~~l~~~l-------------------------------------- 460 (876)
T d1qgra_ 423 VVRDTAAWTVGRICELLPEAAINDVYLAPLL----QCLIEGL-------------------------------------- 460 (876)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTSSTTTHHHHH----HHHHHHT--------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcchhhhhHHHhhhHH----HHHHHHh--------------------------------------
Confidence 99999999999998887643211 1111110 0111110
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHHhhccCcHHHHHhhhcCCHHHH
Q 000146 578 ASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESRLGSLIPADTVGQLKSAVWKER 657 (2052)
Q Consensus 578 ~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~~~~ll~~~l~~~L~s~~Wk~R 657 (2052)
+.++..+
T Consensus 461 -------------------------------------------------------------------------~~~~~v~ 467 (876)
T d1qgra_ 461 -------------------------------------------------------------------------SAEPRVA 467 (876)
T ss_dssp -------------------------------------------------------------------------TSCHHHH
T ss_pred -------------------------------------------------------------------------cCCHHHH
Confidence 0011111
Q ss_pred HHHHHHHHHHHHh---c------------cccchHHH----HHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCch
Q 000146 658 LEAISSLRQQVEA---V------------QNLDQSVE----ILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPK 718 (2052)
Q Consensus 658 l~ale~L~~~v~~---~------------~~~~~~~~----~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~ 718 (2052)
..+...+..+... . .......+ .+...+.. ....+..+...+++.+..++........
T Consensus 468 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 544 (876)
T d1qgra_ 468 SNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDR---PDGHQNNLRSSAYESLMEIVKNSAKDCY 544 (876)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTS---CSSCSTTHHHHHHHHHHHHHHTCCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---hccccHhHHHHHHHHHHHhhhhhhhHHH
Confidence 1111111111111 0 00001111 22222211 1112223455556666655555433333
Q ss_pred hhHHHHHHHHHHhhhchhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHH----HHHHHHHHHHHHHHHhCCCCC-
Q 000146 719 KCVVLCLLGISERVADIKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPK----VLSEGILWMVSAVEDFGVSHL- 793 (2052)
Q Consensus 719 ~~~~~il~~LveKlgd~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpK----v~~e~L~~L~~~i~~fG~~~l- 793 (2052)
..+..+++.+++.+.. +...... ........ .+.-.+.++..++...|....
T Consensus 545 ~~~~~~~~~~~~~l~~-------------~l~~~~~----------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 601 (876)
T d1qgra_ 545 PAVQKTTLVIMERLQQ-------------VLQMESH----------IQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL 601 (876)
T ss_dssp HHHHHHHHHHHHHHHH-------------HHTTTTS----------CCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHhhh----------hcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 3333344443333221 0000000 00000011 111122233333332232111
Q ss_pred -ChHhHHHHHHhhCCC--CCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccc
Q 000146 794 -KLKDLIDFCKDTGLQ--SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRAS 870 (2052)
Q Consensus 794 -~~k~li~~l~~~gL~--~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~ 870 (2052)
....++..+... +. ..+..||..+..+++.+...+|..+..|+..+-|.++..+..
T Consensus 602 ~~~~~i~~~l~~~-l~~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~-------------------- 660 (876)
T d1qgra_ 602 QISDVVMASLLRM-FQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKN-------------------- 660 (876)
T ss_dssp TTHHHHHHHHHHH-C-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH--------------------
T ss_pred hhHHHHHHHHHHH-HhcCCCCcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhC--------------------
Confidence 123455555444 44 346689999999999999999998888876665555544432
Q ss_pred cccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccch--H
Q 000146 871 ESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN--K 948 (2052)
Q Consensus 871 ~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN--~ 948 (2052)
..++.+|..|+..+..+.......+.|. ..+++..|...+.|.+ .
T Consensus 661 --------------------------------~~~~~v~~~a~~~l~~l~~~~~~~~~~~-~~~i~~~l~~~l~~~~~~~ 707 (876)
T d1qgra_ 661 --------------------------------YAEYQVCLAAVGLVGDLCRALQSNIIPF-CDEVMQLLLENLGNENVHR 707 (876)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHHHTCTTSCG
T ss_pred --------------------------------CCcHHHHHHHHHHHHHHHHHhHHhhhhh-HHHHHHHHHHHhCCccCCH
Confidence 1135578899999988887655556654 3788999999997754 6
Q ss_pred HHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCC----cH-------HHHHHHHHHHHHHHHhcC----------
Q 000146 949 NLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDN----KK-------HMRECTLTVLDAWLAAVH---------- 1007 (2052)
Q Consensus 949 ~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~----k~-------~VR~aa~~aL~~i~~~~~---------- 1007 (2052)
.++..++.+++.++..+|..|.+|+..+++.+.+.+... .. .+|+++..|...++....
T Consensus 708 ~~k~~~~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 787 (876)
T d1qgra_ 708 SVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDV 787 (876)
T ss_dssp GGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhH
Confidence 788999999999999999999999999999998877632 11 356677777666654321
Q ss_pred --chhhHHHHHHHH----hcCccChhHHHHHHHHHHHHhccCCCC--Cch--hhhHHH-HHhhcCCCCHHHHHHHHHHHH
Q 000146 1008 --LDKMVPYVTTAL----TDAKLGAEGRKDLFDWLSKQLTGLSGF--PDA--AHLLKP-ASIAMTDKSSDVRKAAEACIV 1076 (2052)
Q Consensus 1008 --l~~ll~~l~~~L----~~~k~np~~R~~~l~~L~~~l~~~~~~--~~~--~~ll~p-l~~~L~D~~~dVRkaA~~~L~ 1076 (2052)
+...++.+...+ .+...+...+..+++.+.......+.. ..+ .+.+.. +..+..+.+...|..|.-+..
T Consensus 788 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~~~~~~~v~~ll~~~~~s~~~~~~~~a~~~~~ 867 (876)
T d1qgra_ 788 MLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATK 867 (876)
T ss_dssp GGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 112223333222 223334556666565555444444331 111 133444 444677788888888877766
Q ss_pred HHHHH
Q 000146 1077 EILRA 1081 (2052)
Q Consensus 1077 ~l~~~ 1081 (2052)
.+.+.
T Consensus 868 ~~~~~ 872 (876)
T d1qgra_ 868 ELRKL 872 (876)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2e-09 Score=144.63 Aligned_cols=641 Identities=14% Similarity=0.132 Sum_probs=361.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhc--CcCHHHHHHHHHHHHHHHHHhhh-cchhhhhhHHHHHHHHhc
Q 000146 339 SERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLIT--DVNIAVAVEAIQAIGNLARGLRT-HFSGSSRFLLPVLLEKLK 415 (2052)
Q Consensus 339 keR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~--D~N~~V~~~A~~~l~~La~~L~~-~f~~~~~~llp~LL~klk 415 (2052)
..|+.+...+..++.. .+..+.+.++++.|...+. |.+..++..++.+++.+++.+.+ .+..+...+++.++..+.
T Consensus 104 ~~~~~~a~~i~~i~~~-~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~ 182 (876)
T d1qgra_ 104 YRPSSASQCVAGIACA-EIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMR 182 (876)
T ss_dssp SSSCHHHHHHHHHHHH-HGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH-HCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHc
Confidence 3455555666666532 1223457788998888875 66678888999999999998865 467899999999999885
Q ss_pred c--CcHHHHHHHHHHHHHHHHhc----CC-C-HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhh-hhHH
Q 000146 416 E--KKPTVAESLTQTLQAMHKAG----CL-N-LVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVH-KDYV 486 (2052)
Q Consensus 416 d--kK~~V~~aa~~aL~ai~~~~----~~-~-l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l-~~l~ 486 (2052)
+ ....|+.++..++..++... .. . ...+++.+...+++.++.+|..++..|..++...+.. +.+++ +.+.
T Consensus 183 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~~~~~l~ 261 (876)
T d1qgra_ 183 KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY-METYMGPALF 261 (876)
T ss_dssp TTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG-CHHHHTTTHH
T ss_pred CcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHH
Confidence 4 45678888888887776541 00 0 1345666677788999999999999999998876543 33443 4577
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccCCCCCCCCCCC
Q 000146 487 PICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQTSGGSVPSVE 566 (2052)
Q Consensus 487 p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 566 (2052)
+.+...+.+.+.+++..+.+.+..+...... ..... .+....... .......- ..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~---------~~~~~~~~~--~~~~~~~~----------~~ 316 (876)
T d1qgra_ 262 AITIEAMKSDIDEVALQGIEFWSNVCDEEMD----LAIEA---------SEAAEQGRP--PEHTSKFY----------AK 316 (876)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH----HHHHH---------HHHHHHSSC--CSSCCCCH----------HH
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHH----HHHHh---------hHHHHhhhh--HHHHHHHH----------HH
Confidence 7788889999999999988877766543211 11000 011110000 00000000 00
Q ss_pred CCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHH----HHHHHhhcc--
Q 000146 567 ASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLE----EIESRLGSL-- 640 (2052)
Q Consensus 567 ~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~e----e~e~~~~~l-- 640 (2052)
.....-...-.... .. .+ ++..+...+.. ++-..+...
T Consensus 317 ~~~~~l~~~l~~~~-~~---------------------------------~~--~~~~~~~~~~~~~a~~~l~~l~~~~~ 360 (876)
T d1qgra_ 317 GALQYLVPILTQTL-TK---------------------------------QD--ENDDDDDWNPCKAAGVCLMLLATCCE 360 (876)
T ss_dssp HHHHHHHHHHHHHT-TC---------------------------------CC--SSCCTTCCCHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhhHHHH-Hh---------------------------------cc--cccccccchHHHHHHHHHHHHHHHhh
Confidence 00000000000000 00 00 00000111111 111111111
Q ss_pred ------CcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHH
Q 000146 641 ------IPADTVGQLKSAVWKERLEAISSLRQQVEAVQN--LDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT 712 (2052)
Q Consensus 641 ------l~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~--~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~ 712 (2052)
+-+-+...+.+.+|+.|..++..+......... .......++..+. +.+.|.+..|...++.++..+++.
T Consensus 361 ~~~~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~--~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T d1qgra_ 361 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI--ELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH--HHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH--HhhcCCccHHHHHHHHHHHHHHHH
Confidence 123456678899999999998888755433211 1112223333332 236789999999999999999887
Q ss_pred cCC--CchhhHHHHHHHHHHhhhc-hhhhHHHHHHHHHHHhhhC--------------------hhHHHHHHHHHHh--h
Q 000146 713 ATK--FPKKCVVLCLLGISERVAD-IKTRAHAMKCLTTFSEAVG--------------------PGFIFERLYKIMK--D 767 (2052)
Q Consensus 713 ~~~--~~~~~~~~il~~LveKlgd-~K~r~~a~e~L~~l~E~~~--------------------~~~Vl~~L~~~l~--~ 767 (2052)
.+. ........+++.++..+.+ ++++..+..++..+++... .+.++..++..+. .
T Consensus 439 ~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~ 518 (876)
T d1qgra_ 439 LPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD 518 (876)
T ss_dssp CGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS
T ss_pred cchhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 543 2344577788888888877 4577777777777766421 1123333433331 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChh-------hHhhhhhc
Q 000146 768 HKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPD-------IKGFLADV 840 (2052)
Q Consensus 768 ~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~-------l~~~L~~l 840 (2052)
..+..++..++..+..++....... .+.+......++..+...+... .......+
T Consensus 519 ~~~~~~~~~~~~~l~~~~~~~~~~~------------------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 580 (876)
T d1qgra_ 519 GHQNNLRSSAYESLMEIVKNSAKDC------------------YPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDL 580 (876)
T ss_dssp SCSTTHHHHHHHHHHHHHHTCCSTT------------------HHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHH
T ss_pred cccHhHHHHHHHHHHHhhhhhhhHH------------------HHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHH
Confidence 2345566666666666554333221 1111111111111111111100 00000011
Q ss_pred cHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcC--CCChHHHHHHHHHHHH
Q 000146 841 KPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLE--SPDWKVRLESIEAVNK 918 (2052)
Q Consensus 841 kP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~--d~~Wk~R~eale~L~~ 918 (2052)
...+...+...+.+...+. . ..+.+.+.+.++..+. +.++..|..++..+..
T Consensus 581 ~~~l~~~l~~~~~~~~~~~-----------------------~---~~~~~~i~~~l~~~l~~~~~~~~~~~~~l~~l~~ 634 (876)
T d1qgra_ 581 QSLLCATLQNVLRKVQHQD-----------------------A---LQISDVVMASLLRMFQSTAGSGGVQEDALMAVST 634 (876)
T ss_dssp HHHHHHHHHHHHTTSCHHH-----------------------H---HTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcchhh-----------------------h---hhhHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 1111122222222111000 0 0001112223333332 3356788889999988
Q ss_pred HHHhccccCCCCChhhHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCc--HHHHHHH
Q 000146 919 ILEEANKRIQPAGTGELFGGLRGRLYDS-NKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNK--KHMRECT 995 (2052)
Q Consensus 919 ll~~a~~~I~~~~~~eL~~aL~~rL~Ds-N~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k--~~VR~aa 995 (2052)
++...+..+.+. +..+++.|...|.+. +..++..|+.+++.++..++..+.+|...+++.+++.+.+.. ..++.++
T Consensus 635 l~~~~~~~~~~~-l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~ 713 (876)
T d1qgra_ 635 LVEVLGGEFLKY-MEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQI 713 (876)
T ss_dssp HHHHHGGGGGGG-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHH
T ss_pred HHHHcchhhHHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHH
Confidence 887544445544 478888998888664 477999999999999999999999999999999999998754 5799999
Q ss_pred HHHHHHHHHhcCc--hhhHHHHH----HHHhcC--ccCh-------hHHHHHHHHHHHHhccC---CC--CC---chhhh
Q 000146 996 LTVLDAWLAAVHL--DKMVPYVT----TALTDA--KLGA-------EGRKDLFDWLSKQLTGL---SG--FP---DAAHL 1052 (2052)
Q Consensus 996 ~~aL~~i~~~~~l--~~ll~~l~----~~L~~~--k~np-------~~R~~~l~~L~~~l~~~---~~--~~---~~~~l 1052 (2052)
..|++.++..+|- ..+++.+. .++... ..+. .+|..++......+... .. .. .+...
T Consensus 714 ~~~i~~i~~~~~~~~~~yl~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 793 (876)
T d1qgra_ 714 LSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPR 793 (876)
T ss_dssp HHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGG
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHH
Confidence 9999999988872 33444444 443311 0011 24555555444433322 11 11 12233
Q ss_pred HHHHHh---h---cCCCCHHHHHHHHHHHHHHHHHcChhHHHH
Q 000146 1053 LKPASI---A---MTDKSSDVRKAAEACIVEILRAGGQETIEK 1089 (2052)
Q Consensus 1053 l~pl~~---~---L~D~~~dVRkaA~~~L~~l~~~~G~e~~~~ 1089 (2052)
+.+++. . -.+.+.+++..|..+++.+...+|.+....
T Consensus 794 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~~ 836 (876)
T d1qgra_ 794 VEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKL 836 (876)
T ss_dssp HHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 2 267889999999999999999999866443
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=2.6e-07 Score=113.36 Aligned_cols=383 Identities=11% Similarity=0.048 Sum_probs=244.6
Q ss_pred HHHHhhhcCCHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHH-----------
Q 000146 644 DTVGQLKSAVWKERLEAISSLRQQVEAVQNLDQSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAAT----------- 712 (2052)
Q Consensus 644 ~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~----------- 712 (2052)
.+++++.+.|=..|.+|-+.|.++.....+ .....+...+.. .+....+...+.-.++..+..
T Consensus 4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~~~--~~~~~l~~il~~----~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~ 77 (458)
T d1ibrb_ 4 TILEKTVSPDRLELEAAQKFLERAAVENLP--TFLVELSRVLAN----PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQ 77 (458)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHC----TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcCch--HHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhhccCchhhhHHhh
Confidence 466778888999999999999888765211 122334444431 111123444444344433321
Q ss_pred -cCCCchhhHHHHHHHHHHhhhchh-hhHHHHHHHHHHHhhhChh----HHHHHHHHHHh-hCCCHHHHHHHHHHHHHHH
Q 000146 713 -ATKFPKKCVVLCLLGISERVADIK-TRAHAMKCLTTFSEAVGPG----FIFERLYKIMK-DHKNPKVLSEGILWMVSAV 785 (2052)
Q Consensus 713 -~~~~~~~~~~~il~~LveKlgd~K-~r~~a~e~L~~l~E~~~~~----~Vl~~L~~~l~-~~KnpKv~~e~L~~L~~~i 785 (2052)
...+.......+...++.-+.+.. .+..+..++..++....+. .+++.++..+. ...++.++..++..+..+.
T Consensus 78 ~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~ 157 (458)
T d1ibrb_ 78 RWLAIDANARREVKNYVLQTLGTETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYIC 157 (458)
T ss_dssp HHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 112333344556666666666632 2223345555555543332 35666666653 3456778888888888888
Q ss_pred HHhCCCCC--ChHhHHHHHHhhCCC--CCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCC
Q 000146 786 EDFGVSHL--KLKDLIDFCKDTGLQ--SSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTV 861 (2052)
Q Consensus 786 ~~fG~~~l--~~k~li~~l~~~gL~--~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p 861 (2052)
...+.... ....++..+... +. +.+..||..|+++++.+..+........ .
T Consensus 158 ~~~~~~~~~~~~~~il~~~~~~-l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~------~------------------ 212 (458)
T d1ibrb_ 158 QDIDPEQLQDKSNEILTAIIQG-MRKEEPSNNVKLAATNALLNSLEFTKANFDKE------S------------------ 212 (458)
T ss_dssp HHSCGGGTGGGHHHHHHHHHHH-HSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSH------H------------------
T ss_pred hhccchhhhhhHHHHHHHHHHH-hcccccCHHHHHHHHHHHHHHHHhhhhhhhhH------H------------------
Confidence 76655433 234556655544 54 4567899999999887775443221100 0
Q ss_pred CCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHh
Q 000146 862 VPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRG 941 (2052)
Q Consensus 862 ~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~ 941 (2052)
....+.+.+...+.+.+|+.|..+++.+..+++.....+.+....-+...+..
T Consensus 213 ---------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~ 265 (458)
T d1ibrb_ 213 ---------------------------ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 265 (458)
T ss_dssp ---------------------------HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred ---------------------------HHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 00012234455567889999999999999999876566666643344555666
Q ss_pred hhccchHHHHHHHHHHHHHHHHHhCh---------------------hhHHhhhHHHHHHHHHhC-------CCcHHHHH
Q 000146 942 RLYDSNKNLVMATLITLGAVASAMGP---------------------AVEKSSKGVLSDILKCLG-------DNKKHMRE 993 (2052)
Q Consensus 942 rL~DsN~~V~~~Al~~l~~la~alg~---------------------~~~~~~~~llp~ll~~l~-------D~k~~VR~ 993 (2052)
.+.+.+..++..|+..+..++..... ....+...++|.+.+.+. |....+|.
T Consensus 266 ~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 345 (458)
T d1ibrb_ 266 AMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCK 345 (458)
T ss_dssp HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHH
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHH
Confidence 77888899999999999888754211 123455667777777664 34446999
Q ss_pred HHHHHHHHHHHhcC---chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCC---CCchhhhHHHHHhhcCCCCHHH
Q 000146 994 CTLTVLDAWLAAVH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSG---FPDAAHLLKPASIAMTDKSSDV 1067 (2052)
Q Consensus 994 aa~~aL~~i~~~~~---l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~D~~~dV 1067 (2052)
++..++..+....| ++.+++.+...+.++ ++..|..++..|......... .+.+..+++.++.+++|.++.|
T Consensus 346 ~a~~~l~~l~~~~~~~~~~~l~~~i~~~l~s~--~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~V 423 (458)
T d1ibrb_ 346 AAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 423 (458)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHH
T ss_pred HHHHHHHHHHHhccHhhhhHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999887 344555666666665 588898888888765544322 2456677778999999999999
Q ss_pred HHHHHHHHHHHHHHcChhH
Q 000146 1068 RKAAEACIVEILRAGGQET 1086 (2052)
Q Consensus 1068 RkaA~~~L~~l~~~~G~e~ 1086 (2052)
|.+|..+++.+...++...
T Consensus 424 R~~a~~~l~~i~~~~~~~~ 442 (458)
T d1ibrb_ 424 RDTAAWTVGRICELLPEAA 442 (458)
T ss_dssp HHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 9999999999998887643
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=3.2e-07 Score=112.54 Aligned_cols=384 Identities=13% Similarity=0.147 Sum_probs=236.5
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccch--HHHHHHHHHHHHHHHHHhChhh----
Q 000146 896 TLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSN--KNLVMATLITLGAVASAMGPAV---- 969 (2052)
Q Consensus 896 ~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN--~~V~~~Al~~l~~la~alg~~~---- 969 (2052)
.+++.+-+.|-.+|++|-+.|.++.... ..+.+..|...+.|.+ ..++..|+.++......-....
T Consensus 4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~--------~~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~ 75 (458)
T d1ibrb_ 4 TILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 75 (458)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHhcC--------chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHH
Confidence 3567778889999999999999998742 3567777777775543 5788888877766553322111
Q ss_pred --------HHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHh-cC---chhhHHHHHHHHhcCccChhHHHHHHHHHH
Q 000146 970 --------EKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAA-VH---LDKMVPYVTTALTDAKLGAEGRKDLFDWLS 1037 (2052)
Q Consensus 970 --------~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~-~~---l~~ll~~l~~~L~~~k~np~~R~~~l~~L~ 1037 (2052)
......+...+++.+.+....+|.++ .++..++.. .+ ...+++.+...+.+...++..+..++..+.
T Consensus 76 ~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 154 (458)
T d1ibrb_ 76 QQRWLAIDANARREVKNYVLQTLGTETYRPSSAS-QCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIG 154 (458)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTCCCSSSCSHH-HHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred hhhhccCCHHHHHHHHHHHHhccCCCcHHHHHHH-HHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 12234566778888888877666554 555555554 32 356888888888765445667777777777
Q ss_pred HHhccCCC---CCchhhhHHHHHhhcC--CCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChHHHHHHHHHHhhccCC
Q 000146 1038 KQLTGLSG---FPDAAHLLKPASIAMT--DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGPALALILERIKLNGAS 1112 (2052)
Q Consensus 1038 ~~l~~~~~---~~~~~~ll~pl~~~L~--D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~~~~~I~~~l~k~~~~ 1112 (2052)
........ ......++..+...+. |.+.+||..|..++..+......... .......+..
T Consensus 155 ~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~-------~~~~~~~~~~-------- 219 (458)
T d1ibrb_ 155 YICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFD-------KESERHFIMQ-------- 219 (458)
T ss_dssp HHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHT-------SHHHHHHHHH--------
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhh-------hHHHHHHhHh--------
Confidence 66554433 2234556666777774 56788999988877666533221100 0000000111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccchhhhhhhhccccCCCchHHHhhhhhcccccc
Q 000146 1113 QVSMGPTSKSSSKVPKSASNGVSKHGNRAISSRVIPTKGARPESIMSVQDFAVQSQALLNVKDSNKEDRERMVVRRFKFE 1192 (2052)
Q Consensus 1113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~R~~~~~~k~~f~ 1192 (2052)
T Consensus 220 -------------------------------------------------------------------------------- 219 (458)
T d1ibrb_ 220 -------------------------------------------------------------------------------- 219 (458)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCChhHHHHHHHHHHhhhhHHHHHhhcCcCHHHHHHHHHHHHHhcCcChhhhHHH-HHHHHHHHHHhhcCccHHHHHHHH
Q 000146 1193 DPRIEQIQELENDMMKYFREDLHRRLLSTDFKKQVDGLEMLQKALPSIRKDIIEV-LDILLRWFVLQFCKSNTTCLLKVL 1271 (2052)
Q Consensus 1193 ~pr~e~ve~L~~q~~~~~~~~l~~~lfs~D~k~~l~al~~L~~~l~~~~~~~i~~-lDlllk~l~lr~~dtN~~vl~k~L 1271 (2052)
-+...+.+.|+..+..+++.|.+.+...+..+..+ .+++...+...+.+.+..+...++
T Consensus 220 --------------------~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~ 279 (458)
T d1ibrb_ 220 --------------------VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI 279 (458)
T ss_dssp --------------------HHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHH
T ss_pred --------------------hHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 12222233444444444444444433333222222 222333333445666777777777
Q ss_pred hhHHHHHHHHHhc-----------------CCCCCHHhHHhhhHHHHHhhC-------CChHHHHHHHHHHHHHHhhcCC
Q 000146 1272 EFLPELFDTLRDE-----------------GYSLTESEAAVFLPCLVEKSG-------HNIEKVREKMRELTKQIVNFYS 1327 (2052)
Q Consensus 1272 d~l~~l~~~l~~~-----------------~y~l~~~Ea~~~lp~Lv~K~G-------d~k~~vr~~v~~il~~~~~v~p 1327 (2052)
+++..+....... .+.+...-...++|.+..-+- |....+|.....++..++..++
T Consensus 280 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~ 359 (458)
T d1ibrb_ 280 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE 359 (458)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhcc
Confidence 7776654433211 111112223445555555442 2344588888899999988887
Q ss_pred cc---ccHHHHHhhhcCCChhhHHHHHHHHHHHHHhhCCCcccc--cchHHHHHHHhcCCChHHHHHHHHHHHHHHHHhC
Q 000146 1328 AT---KTLPYILEGLRSKNNRTRIECVDLVGFLIDHHGAEISGQ--LKSLQIVASLTAERDGEIRKAALNTLATGYKILG 1402 (2052)
Q Consensus 1328 ~s---kvf~~l~~gl~sKN~r~R~ecl~~l~~li~~~G~~~~~~--~K~l~~ia~~i~drd~~VR~AAl~~l~~~y~~~G 1402 (2052)
.. .+++++.+++++.||++|..++..|+.+.+..+-....+ ...++.+..++.|.++.||.+|+.||+.+-..++
T Consensus 360 ~~~~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~ 439 (458)
T d1ibrb_ 360 DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 439 (458)
T ss_dssp TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HhhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 53 566777789999999999999999999875433222222 2346999999999999999999999998766665
Q ss_pred h
Q 000146 1403 E 1403 (2052)
Q Consensus 1403 ~ 1403 (2052)
+
T Consensus 440 ~ 440 (458)
T d1ibrb_ 440 E 440 (458)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.40 E-value=1.3e-05 Score=97.79 Aligned_cols=375 Identities=11% Similarity=0.115 Sum_probs=225.4
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHhcccc--ch-----HHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCC
Q 000146 643 ADTVGQLKSAVWKERLEAISSLRQQVEAVQNL--DQ-----SVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATK 715 (2052)
Q Consensus 643 ~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~--~~-----~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~ 715 (2052)
+++++.|.|.|-..+..|+..+.+++...... +. ....|+++|. +..+..|+..++.+|..++.....
T Consensus 16 ~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~-----~~~~~~v~~~a~~~L~~la~~~~~ 90 (434)
T d1q1sc_ 16 EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG-----KTDCSPIQFESAWALTNIASGTSE 90 (434)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTT-----CGGGHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHc-----cCCCHHHHHHHHHHHHHHhcCChh
Confidence 46778999999999999999999887542221 10 1234555542 234567888888888887643111
Q ss_pred CchhhH-HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhCh--h-----HHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 000146 716 FPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP--G-----FIFERLYKIMKDHKNPKVLSEGILWMVSAV 785 (2052)
Q Consensus 716 ~~~~~~-~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~--~-----~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i 785 (2052)
.....+ ..++|.++..+.+ ..++..+..+|..++..... . ..+..++..+............+..+..++
T Consensus 91 ~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l 170 (434)
T d1q1sc_ 91 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 170 (434)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred hhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHH
Confidence 111111 2357777777765 46888888888888753211 1 123344444322222211112222222222
Q ss_pred HHhC--CCCC----ChHhHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCC
Q 000146 786 EDFG--VSHL----KLKDLIDFCKDTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEG 859 (2052)
Q Consensus 786 ~~fG--~~~l----~~k~li~~l~~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~ 859 (2052)
.... .... ....+++.+..+ +.+.++.+|..|..++..+....... ...+ ..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~l~~l-l~~~~~~~~~~a~~~l~~l~~~~~~~------------~~~~----~~----- 228 (434)
T d1q1sc_ 171 SNLCRNKNPAPPLDAVEQILPTLVRL-LHHNDPEVLADSCWAISYLTDGPNER------------IEMV----VK----- 228 (434)
T ss_dssp HHHTCCCTTCCCHHHHHHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTSSCHHH------------HHHH----HT-----
T ss_pred HHHhhcccccchhhhhhhHHHHHHHH-HhccccchhhhHHhhhcccchhhhhh------------HHHH----hh-----
Confidence 2221 1111 235577777777 89999999999988877664321100 0000 00
Q ss_pred CCCCccccccccccCCCCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCC-hhhHHHH
Q 000146 860 TVVPKKTVRASESTSSVSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAG-TGELFGG 938 (2052)
Q Consensus 860 ~p~p~r~~r~~~~~~~~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~-~~eL~~a 938 (2052)
..+.+.+.+.+.+.++..+..++..+..++... ....... -..++..
T Consensus 229 -------------------------------~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~-~~~~~~~~~~~~~~~ 276 (434)
T d1q1sc_ 229 -------------------------------KGVVPQLVKLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAV 276 (434)
T ss_dssp -------------------------------TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTGGGG
T ss_pred -------------------------------cccchhcccccccchhhhhhchhhhhhhHHhhh-hHHHHHHHhccccch
Confidence 002345677788889999999999998876421 1111000 0234556
Q ss_pred HHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchh-------
Q 000146 939 LRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS-KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDK------- 1010 (2052)
Q Consensus 939 L~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~-~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~------- 1010 (2052)
|...+.+.+..++..|+.++..++..-........ ..+++.++..+.+....++..+..++..+....+.+.
T Consensus 277 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~ 356 (434)
T d1q1sc_ 277 FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHC 356 (434)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHT
T ss_pred HHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 77788899999999999999998753222222222 3478999999999999999999999999887765322
Q ss_pred -hHHHHHHHHhcCccChhHHHHHHHHHHHHhcc---CCCCCchhhh------HHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000146 1011 -MVPYVTTALTDAKLGAEGRKDLFDWLSKQLTG---LSGFPDAAHL------LKPASIAMTDKSSDVRKAAEACIVEI 1078 (2052)
Q Consensus 1011 -ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~---~~~~~~~~~l------l~pl~~~L~D~~~dVRkaA~~~L~~l 1078 (2052)
+++.+...|.+. ++..+..++..+...+.. .......... +..|-...++.|.+||+.|.+.+..+
T Consensus 357 ~~i~~L~~ll~~~--d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 357 GIIEPLMNLLSAK--DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp TCHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 366777777755 577888887777665542 2221111111 22232334788999999998887543
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=0.001 Score=83.06 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHH--hhhcchhhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhcCCCHH
Q 000146 365 VCRTLKKLITDVNIAVAVEAIQAIGNLARG--LRTHFSGSSRFLLPVLLEKLKEK-KPTVAESLTQTLQAMHKAGCLNLV 441 (2052)
Q Consensus 365 l~~~L~k~l~D~N~~V~~~A~~~l~~La~~--L~~~f~~~~~~llp~LL~klkdk-K~~V~~aa~~aL~ai~~~~~~~l~ 441 (2052)
.++.|.+.++|.+..|+..|+.++..++.. .+..+-. ...+++.|+..+... ...+++.+..+|..+..+ .....
T Consensus 18 aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~-~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~~~~~ 95 (529)
T d1jdha_ 18 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMR-SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLL 95 (529)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHT-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHH-hhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHH
Confidence 367888888988999999999999999853 2222211 245789999988764 578899888899887643 11111
Q ss_pred -----HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 000146 442 -----DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIA 512 (2052)
Q Consensus 442 -----~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~ 512 (2052)
..++.|...|++.++.++..++..|..+........-.-.-...+|.++..+++.+++++..+..++..+.
T Consensus 96 ~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~ 171 (529)
T d1jdha_ 96 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 171 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHh
Confidence 34677888899999999999999999877654432111112447899999999999999999999998775
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.00 E-value=0.00054 Score=85.18 Aligned_cols=375 Identities=13% Similarity=0.108 Sum_probs=230.4
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCC---hHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHhhhcchhh-
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIAPGD---FTEVCRTLKKLIT-DVNIAVAVEAIQAIGNLARGLRTHFSGS- 402 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~d---y~~l~~~L~k~l~-D~N~~V~~~A~~~l~~La~~L~~~f~~~- 402 (2052)
.+...+.+.+-..+..|+..++++++..+-.+-+ -..+++.|...++ +.+..+...|+.++..++.+-.......
T Consensus 80 ~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~ 159 (503)
T d1wa5b_ 80 QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVV 159 (503)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5667788889999999999999987432222111 1235667778887 7788899999999999987543322222
Q ss_pred hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChh
Q 000146 403 SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV------DVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKA 476 (2052)
Q Consensus 403 ~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~------~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~ 476 (2052)
-..++|.++..+......+++.+..+|..++.. +.... .+++.+...+.+.++.++..++..|..+.......
T Consensus 160 ~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~-~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~ 238 (503)
T d1wa5b_ 160 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD-STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 238 (503)
T ss_dssp HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred hCCChHHHHHHhcCCChhHHHHHHHHHHHHhhh-hHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccc
Confidence 234788899999988999999999999998764 21111 23456677788888889888888877766543221
Q ss_pred HHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHHHHHHhCChhHHHhHhhccHHHHHHHHHHHhcCCCCCCCCCCCcccC
Q 000146 477 AVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAAIAKSVGMRPLERSIEKLDDVRRNKLSEMIAGSGGDVATGTSSARVQ 556 (2052)
Q Consensus 477 ~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~~Ge~~~~~~l~~Ld~~k~kkI~e~~~~~~~~~~~~~~~~~~~ 556 (2052)
.-......++|.+.+++...+++++..++.++..+.. +... .+...++.
T Consensus 239 ~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~--~~~~--------------~~~~~~~~--------------- 287 (503)
T d1wa5b_ 239 PDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD--GPQE--------------AIQAVIDV--------------- 287 (503)
T ss_dssp CCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS--SCHH--------------HHHHHHHT---------------
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcc--CCch--------------hhhhhhhh---------------
Confidence 1112346789999999999999999888877765542 1110 01111110
Q ss_pred CCCCCCCCCCCCcchhhhhhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCcCCCCCCCCCCCCCCHHHHHHH
Q 000146 557 TSGGSVPSVEASESSFVRKSAASMLSGKRPVSAAPASKKGGPVKPSAKKDGSGKQETSKLTEAPEDVEPSEMSLEEIESR 636 (2052)
Q Consensus 557 ~~~~s~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~~s~k~~~~k~~~~~~~~~~~~~s~~~~~~~~~~~~~~s~ee~e~~ 636 (2052)
T Consensus 288 -------------------------------------------------------------------------------- 287 (503)
T d1wa5b_ 288 -------------------------------------------------------------------------------- 287 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhccCcHHHHHhhhcCCHHHHHHHHHHHHHHHHhccccc------hHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHH
Q 000146 637 LGSLIPADTVGQLKSAVWKERLEAISSLRQQVEAVQNLD------QSVEILVRLVCMLPGWSEKNVQVQQQVIEVINYLA 710 (2052)
Q Consensus 637 ~~~ll~~~l~~~L~s~~Wk~Rl~ale~L~~~v~~~~~~~------~~~~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~ 710 (2052)
-+.+.++..+.+.++..+..++..+..+....+... ...+.+..+ +...+..+...++-++..++
T Consensus 288 ---~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~l------l~~~~~~i~~~~~~~l~nl~ 358 (503)
T d1wa5b_ 288 ---RIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLL------LSSPKENIKKEACWTISNIT 358 (503)
T ss_dssp ---TCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH------TTCSCHHHHHHHHHHHHHHT
T ss_pred ---hhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHH------hcCCCHHHHHHHHHHHHHHh
Confidence 001234556667777777777777765553311100 011222222 24455567777777776654
Q ss_pred HHcCCCchhhH-HHHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhC--hh---H-----HHHHHHHHHhhCCCHHHHHHH
Q 000146 711 ATATKFPKKCV-VLCLLGISERVAD--IKTRAHAMKCLTTFSEAVG--PG---F-----IFERLYKIMKDHKNPKVLSEG 777 (2052)
Q Consensus 711 ~~~~~~~~~~~-~~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~--~~---~-----Vl~~L~~~l~~~KnpKv~~e~ 777 (2052)
...+....... ..+++.++..+.+ .+++..+.-+|..++.... ++ + ++..++..+ +.+++++...+
T Consensus 359 ~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L-~~~d~~~~~~~ 437 (503)
T d1wa5b_ 359 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL-EIADNRIIEVT 437 (503)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHT-TTCCHHHHHHH
T ss_pred hccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHh-cCCCHHHHHHH
Confidence 32111111111 2355666666543 5788888888888776432 11 1 234445554 67899999999
Q ss_pred HHHHHHHHHH-------hCCCCCChH------hHHHHHHhhCCCCCcHHHHHHHHHHHHHH
Q 000146 778 ILWMVSAVED-------FGVSHLKLK------DLIDFCKDTGLQSSAAATRNATIKLLGAL 825 (2052)
Q Consensus 778 L~~L~~~i~~-------fG~~~l~~k------~li~~l~~~gL~~~n~~VR~aA~~ll~~L 825 (2052)
|..|..++.- .+...-... ..++.+..+ ..|.|..|++.|..++-..
T Consensus 438 L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~L-q~~~~~~i~~~A~~il~~~ 497 (503)
T d1wa5b_ 438 LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNC-QQNENDKIYEKAYKIIETY 497 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGG-GGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHH
Confidence 9988887741 111110111 133445555 6789999999998876443
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.93 E-value=0.0017 Score=80.58 Aligned_cols=341 Identities=10% Similarity=0.055 Sum_probs=216.6
Q ss_pred hHHHHHhc-cCcHHHHHHHHHHHHHHHHHhhhhhhhhh-HHHHHHHHHhhcCCChhHHHHHHHHHHHHHhhhh--h----
Q 000146 94 PLFKKTVA-DSNAPVQDKALDALIAYLKAADADAGRYA-KEVCDAIAAKCLTGRPKTVEKAQAVFMLWVELEA--V---- 165 (2052)
Q Consensus 94 ~l~~k~v~-DsN~~aqe~gl~al~~~l~~~~~~~~~~~-~~vi~~LieK~L~~r~~tk~~A~~~~l~~~e~~~--~---- 165 (2052)
+.+-+++. +.|..+|..++.+|..+............ ..+++.++.-.-+....+++.|+.++..++..+. .
T Consensus 122 ~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~ 201 (503)
T d1wa5b_ 122 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVL 201 (503)
T ss_dssp HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34444554 77888999999888765533222111111 2345666655223678899999999888775421 1
Q ss_pred -hhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCC--cChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCch
Q 000146 166 -DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDP 242 (2052)
Q Consensus 166 -~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~--i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~~ 242 (2052)
..+++.|+..+.+.++.++..++.+|..+........ .....+++.+..++.+.|..++..+...+..+..+- ++.
T Consensus 202 ~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~-~~~ 280 (503)
T d1wa5b_ 202 QCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP-QEA 280 (503)
T ss_dssp HTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC-HHH
T ss_pred hhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC-chh
Confidence 2345667778888889888888777777764332211 124568899999999999999888877665554321 000
Q ss_pred hhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccccC
Q 000146 243 VKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDILT 322 (2052)
Q Consensus 243 l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdIl~ 322 (2052)
+ ..+ ++. +
T Consensus 281 ~-------------~~~---~~~------------------------------~-------------------------- 288 (503)
T d1wa5b_ 281 I-------------QAV---IDV------------------------------R-------------------------- 288 (503)
T ss_dssp H-------------HHH---HHT------------------------------T--------------------------
T ss_pred h-------------hhh---hhh------------------------------h--------------------------
Confidence 0 000 000 0
Q ss_pred cCccchhhhhcccCChHHHHHHHHHHHHHhcCCC-CCCC-ChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcch
Q 000146 323 PLEKSGFWEGVKATKWSERKDAVAELTKLASTKR-IAPG-DFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFS 400 (2052)
Q Consensus 323 kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~k-i~~~-dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~ 400 (2052)
+. +.+...+.+.++..+..++..|..++.... .... -...+++.|...+.+.+..++..++.+|..++.+-.....
T Consensus 289 -~~-~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~ 366 (503)
T d1wa5b_ 289 -IP-KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 366 (503)
T ss_dssp -CH-HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred -hh-hhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHH
Confidence 00 134455666778888888888887764211 0000 0123567788888888999999999999998764322222
Q ss_pred hh-hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCC---H-----HHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Q 000146 401 GS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLN---L-----VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIE 471 (2052)
Q Consensus 401 ~~-~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~---l-----~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~ 471 (2052)
.. -..+++.++..+......|+..+..++.+++.+++.. + ..+++.+...|+.+++.+...++..|..++.
T Consensus 367 ~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~ 446 (503)
T d1wa5b_ 367 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 446 (503)
T ss_dssp HHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 22 2468899999999988999999999999988762111 1 1234567778888899999999999888875
Q ss_pred hcCh---------hHHHHhhh--hHHHHHHHhhcCCChHHHHHHHHHHH
Q 000146 472 TSSK---------AAVLKVHK--DYVPICMECLNDGTPEVRDAAFSVLA 509 (2052)
Q Consensus 472 ~~~~---------~~l~~~l~--~l~p~l~k~l~Ds~~~VR~aA~~~l~ 509 (2052)
.... ..+...+. ..+..+-.+.++.+.+|++.|.+.+.
T Consensus 447 ~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~ 495 (503)
T d1wa5b_ 447 MGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 495 (503)
T ss_dssp HHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred HHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3211 11111111 13445666778899999988877664
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.90 E-value=0.00064 Score=76.72 Aligned_cols=247 Identities=13% Similarity=0.055 Sum_probs=148.2
Q ss_pred HHHHhhhc--hhhhHHHHHHHHHHHhhhChhHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCChHhHHHHH-H
Q 000146 727 GISERVAD--IKTRAHAMKCLTTFSEAVGPGFIFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKLKDLIDFC-K 803 (2052)
Q Consensus 727 ~LveKlgd--~K~r~~a~e~L~~l~E~~~~~~Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~k~li~~l-~ 803 (2052)
.|++-+.| +.+|..|..+|..+ +.+.+++.++..+ +++++.||..++..|..+ +...-....++..+ .
T Consensus 23 ~L~~~L~d~~~~vR~~A~~~L~~~----~~~~~~~~l~~~l-~d~~~~vr~~a~~aL~~l----~~~~~~~~~~~~~l~~ 93 (276)
T d1oyza_ 23 ELFRLLDDHNSLKRISSARVLQLR----GGQDAVRLAIEFC-SDKNYIRRDIGAFILGQI----KICKKCEDNVFNILNN 93 (276)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHH----CCHHHHHHHHHHH-TCSSHHHHHHHHHHHHHS----CCCTTTHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhh----CCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh----ccccccccchHHHHHH
Confidence 34444444 45777777766654 3344566666654 677888887777666543 32211122233322 3
Q ss_pred hhCCCCCcHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCCCCCCCCCC
Q 000146 804 DTGLQSSAAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSSVSSGGSDG 883 (2052)
Q Consensus 804 ~~gL~~~n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~~~~~~~d~ 883 (2052)
.+ +.+.++.||.+|...++.++......
T Consensus 94 ~~-l~d~~~~vr~~a~~aL~~~~~~~~~~--------------------------------------------------- 121 (276)
T d1oyza_ 94 MA-LNDKSACVRATAIESTAQRCKKNPIY--------------------------------------------------- 121 (276)
T ss_dssp HH-HHCSCHHHHHHHHHHHHHHHHHCGGG---------------------------------------------------
T ss_pred HH-hcCCChhHHHHHHHHHHHHccccchh---------------------------------------------------
Confidence 34 67778888888877776665321100
Q ss_pred CCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHH
Q 000146 884 LPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVAS 963 (2052)
Q Consensus 884 lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~ 963 (2052)
...+.+.+...+.|.+|.+|..++..+..+-. ......+...+.+.+..+...+...+..+..
T Consensus 122 ------~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 184 (276)
T d1oyza_ 122 ------SPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKY 184 (276)
T ss_dssp ------HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC
T ss_pred ------hHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-----------HHHHHHHHHhcccccchhhhhHHHHHHhhhc
Confidence 01123345556677888888888776644321 2234455666677777777666655443221
Q ss_pred HhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccC
Q 000146 964 AMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGL 1043 (2052)
Q Consensus 964 alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~ 1043 (2052)
....+.+.++..+.+....+|.++..++.. .+....++.|...+.++ .+|..++..|... .
T Consensus 185 --------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~----~~~~~~~~~L~~~l~d~----~vr~~a~~aL~~i-g-- 245 (276)
T d1oyza_ 185 --------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSY----RKDKRVLSVLCDELKKN----TVYDDIIEAAGEL-G-- 245 (276)
T ss_dssp --------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHH----TTCGGGHHHHHHHHTSS----SCCHHHHHHHHHH-C--
T ss_pred --------cccccchhhhhhhhhhhhhhhhhhccccch----hhhhhhHHHHHHHhCCh----HHHHHHHHHHHHc-C--
Confidence 123456677888889999898887777654 45667788888888743 4677777777643 1
Q ss_pred CCCCchhhhHHHHHhhc-CCCCHHHHHHHHHHH
Q 000146 1044 SGFPDAAHLLKPASIAM-TDKSSDVRKAAEACI 1075 (2052)
Q Consensus 1044 ~~~~~~~~ll~pl~~~L-~D~~~dVRkaA~~~L 1075 (2052)
....++.+...| .+.+.+||.+|.++|
T Consensus 246 -----~~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 246 -----DKTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp -----CGGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 133455566666 446788999888776
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=0.0019 Score=77.79 Aligned_cols=382 Identities=13% Similarity=0.097 Sum_probs=230.7
Q ss_pred ChhhhhcCCchhHHHHHHHHHHHHhhccCCCCchhhhhhcccccccccchhhHhhhhcccccccccccccchhhhhhchh
Q 000146 15 PWEDRLLHKNWKVRNEANIDLAALCDSITDPKDNRIRELGQFSFIVSDLTFVWIRIEHCGCEMMRCRFTSIYSFVLMLGP 94 (2052)
Q Consensus 15 pl~~rl~hk~WK~R~~~yeel~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (2052)
++-..+.+.+=-.+.+|-..+.+++.. +.+.+ ...+ ... ...+
T Consensus 17 ~lv~~l~s~~~~~~~~a~~~l~~l~s~--~~~~~-~~~i------~~~----------------------------g~i~ 59 (434)
T d1q1sc_ 17 DIVKGINSNNLESQLQATQAARKLLSR--EKQPP-IDNI------IRA----------------------------GLIP 59 (434)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHHHHHS--SSCCC-HHHH------HHT----------------------------TCHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcC--CCCch-HHHH------HHC----------------------------CCHH
Confidence 456678888888888888888887753 11211 1111 000 0144
Q ss_pred HHHHHhc-cCcHHHHHHHHHHHHHHHHHhhhhhhhh-hHHHHHHHHHhhcC-CChhHHHHHHHHHHHHHhhh-h------
Q 000146 95 LFKKTVA-DSNAPVQDKALDALIAYLKAADADAGRY-AKEVCDAIAAKCLT-GRPKTVEKAQAVFMLWVELE-A------ 164 (2052)
Q Consensus 95 l~~k~v~-DsN~~aqe~gl~al~~~l~~~~~~~~~~-~~~vi~~LieK~L~-~r~~tk~~A~~~~l~~~e~~-~------ 164 (2052)
.+-+++. ..|..+|..++.+|..+........... -...++.++.- |. ....+++.|..++..++.-. .
T Consensus 60 ~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~ 138 (434)
T d1q1sc_ 60 KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL-LASPHAHISEQAVWALGNIAGDGSAFRDLVI 138 (434)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhc-cccCCHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4555665 4568899999999987753322211111 12467777765 65 57889999999988776432 1
Q ss_pred hhhHHHHHHHHhhccChh-hHHHHHHHHHHHHHHh--CC-CCc---ChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHh
Q 000146 165 VDVFLDVMEKAIKNKVAK-AVVPAIDVMFQALSEF--GA-KII---PPKRILKMLPELFDHQDQNVRASSKGLTLELCRW 237 (2052)
Q Consensus 165 ~~~v~e~Ll~~l~~K~PK-vv~~~l~~L~~~l~~F--G~-~~i---~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~ 237 (2052)
....++.|+..+...... .....+..+...+..+ +. ... ....+++.+..++.+.|..+|..+...+..+...
T Consensus 139 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~ 218 (434)
T d1q1sc_ 139 KHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG 218 (434)
T ss_dssp HTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh
Confidence 123445566665544322 1112222222222222 21 111 1356788899999999999999887776555322
Q ss_pred hCCchhhHHHHhhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 000146 238 IGKDPVKTILFEKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDP 317 (2052)
Q Consensus 238 lG~~~l~~~L~~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~ 317 (2052)
- + .....+ .. .+ +
T Consensus 219 ~--~------------~~~~~~----~~-----------------------------~~------------~-------- 231 (434)
T d1q1sc_ 219 P--N------------ERIEMV----VK-----------------------------KG------------V-------- 231 (434)
T ss_dssp C--H------------HHHHHH----HT-----------------------------TT------------C--------
T ss_pred h--h------------hhHHHH----hh-----------------------------cc------------c--------
Confidence 1 0 000000 00 00 0
Q ss_pred ccccCcCccchhhhhcccCChHHHHHHHHHHHHHhcCC-CCCCCCh-HHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHh
Q 000146 318 VDILTPLEKSGFWEGVKATKWSERKDAVAELTKLASTK-RIAPGDF-TEVCRTLKKLITDVNIAVAVEAIQAIGNLARGL 395 (2052)
Q Consensus 318 vdIl~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~-ki~~~dy-~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L 395 (2052)
+ +.+.+.+.+.++..+..++..|..++... .....-+ ..++..|...+.+.+..|+..|+.++..++..-
T Consensus 232 ------~--~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~ 303 (434)
T d1q1sc_ 232 ------V--PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR 303 (434)
T ss_dssp ------H--HHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred ------c--hhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhcccc
Confidence 0 13444566677788888888888776321 1000000 123445777888889999999999999998643
Q ss_pred hhcchhh-hhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHH--------HHHHHHHHHhhcCChHHHHHHHHHH
Q 000146 396 RTHFSGS-SRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLV--------DVVEDVKTSVKNKVPLVRSLTLNWV 466 (2052)
Q Consensus 396 ~~~f~~~-~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~--------~ll~~l~~~L~~Knp~vR~~~l~~L 466 (2052)
....... -..++|.++..+.+....++..+..++..+..+ + +.+ .+++.|...++.+++.++..++..|
T Consensus 304 ~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~-~-~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l 381 (434)
T d1q1sc_ 304 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG-G-TVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAI 381 (434)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred chhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhc-C-CHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3222222 234788999999998999999999999998876 2 222 2356678888999999999999999
Q ss_pred HHHHHhc---C-hhHHHHhhh--hHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 000146 467 TFCIETS---S-KAAVLKVHK--DYVPICMECLNDGTPEVRDAAFSVLAAI 511 (2052)
Q Consensus 467 ~~~l~~~---~-~~~l~~~l~--~l~p~l~k~l~Ds~~~VR~aA~~~l~~l 511 (2052)
..++... . ...+...+. .+++.+-.+.++.+++||+.|.+.+..+
T Consensus 382 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~ 432 (434)
T d1q1sc_ 382 SNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 432 (434)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8887532 1 112222222 2456676778899999999998887544
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=0.00062 Score=76.79 Aligned_cols=128 Identities=13% Similarity=0.057 Sum_probs=98.7
Q ss_pred HHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 000146 367 RTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVED 446 (2052)
Q Consensus 367 ~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~ 446 (2052)
..|.+.++|.|+.|+..|+.+|+.+.. ...+|.|+..++|+.+.||..+..+|..+... ....+.+++.
T Consensus 22 ~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~-~~~~~~~~~~ 90 (276)
T d1oyza_ 22 DELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCEDNVFNI 90 (276)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccccchHHH
Confidence 357788899999999999999987632 35689999999999999999998888766432 2234445555
Q ss_pred HHH-HhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHHH
Q 000146 447 VKT-SVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLAA 510 (2052)
Q Consensus 447 l~~-~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~~ 510 (2052)
+.. .+++.+|.+|..++..|..+....+ ...+.+++.+...++|.++.||.++..+++.
T Consensus 91 l~~~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~ 150 (276)
T d1oyza_ 91 LNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISV 150 (276)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCChhHHHHHHHHHHHHccccc-----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhh
Confidence 543 5678999999999999988665432 1236688899999999999999988877654
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=5.4e-05 Score=86.46 Aligned_cols=185 Identities=12% Similarity=0.063 Sum_probs=132.3
Q ss_pred hhhhhcccCChHHHHHHHHHHHHHhcCCCCC--CCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchh-hhh
Q 000146 328 GFWEGVKATKWSERKDAVAELTKLASTKRIA--PGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSG-SSR 404 (2052)
Q Consensus 328 ~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~--~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~-~~~ 404 (2052)
.......+.++.+|..|++.|..++...... -...+.+...+...+++.+..|+..|+.+|+.++..-...-.. .-.
T Consensus 21 ~~~~~~~~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~ 100 (264)
T d1xqra1 21 TAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL 100 (264)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHhhcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444566788999999999999987421100 0112334444556777899999999999999999643221111 224
Q ss_pred hHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhH
Q 000146 405 FLLPVLLEKLK-EKKPTVAESLTQTLQAMHKAGCLNL------VDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAA 477 (2052)
Q Consensus 405 ~llp~LL~klk-dkK~~V~~aa~~aL~ai~~~~~~~l------~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~ 477 (2052)
..+|.|+..+. +..+.|+..+..||..++.+ +... ...++.+...+++.++.++..++..|..++...+...
T Consensus 101 ~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~ 179 (264)
T d1xqra1 101 GALRKLLRLLDRDACDTVRVKALFAISCLVRE-QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 179 (264)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CchHHHHHHhhcCCCHHHHHHHHHHHHHHhcc-chhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHH
Confidence 67899999884 67788999999999999875 2111 2236778888899999999999999998876644322
Q ss_pred HHHhh-hhHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 000146 478 VLKVH-KDYVPICMECLNDGTPEVRDAAFSVLAAIAKS 514 (2052)
Q Consensus 478 l~~~l-~~l~p~l~k~l~Ds~~~VR~aA~~~l~~l~~~ 514 (2052)
.... ...+|.++..+.+.+++||..|..+|+.+...
T Consensus 180 -~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 180 -GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp -HHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred -HHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 1222 34789999999999999999999999887643
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.034 Score=68.60 Aligned_cols=365 Identities=11% Similarity=0.052 Sum_probs=202.1
Q ss_pred hhHHHHHhccCcHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHhhcC--CChhHHHHHHHHHHHHHhhhh-h---
Q 000146 93 GPLFKKTVADSNAPVQDKALDALIAYLKAADADAG-RYAKEVCDAIAAKCLT--GRPKTVEKAQAVFMLWVELEA-V--- 165 (2052)
Q Consensus 93 ~~l~~k~v~DsN~~aqe~gl~al~~~l~~~~~~~~-~~~~~vi~~LieK~L~--~r~~tk~~A~~~~l~~~e~~~-~--- 165 (2052)
.+.+.+.++|.+..++..|+.++..+......... -...++++.|+. .|. ..+.+++.|..++..+...+. .
T Consensus 19 ip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~-~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i 97 (529)
T d1jdha_ 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR-TMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHH-HHcCCCCHHHHHHHHHHHHHHhCCchhHHHH
Confidence 34456678899999999999999887644322110 112356777774 464 467899989888877654322 1
Q ss_pred --hhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCC--cChHHHHhhhhhhhCCCChhHHHHHHHHHHHHHHhhCCc
Q 000146 166 --DVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI--IPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKD 241 (2052)
Q Consensus 166 --~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~--i~~k~il~~l~~ll~~~dk~VR~~a~~l~vely~~lG~~ 241 (2052)
...++.|...+.+.+++++..++.+|..+........ +--...++.|..++++.+..+|..+..++..+...- .
T Consensus 98 ~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~--~ 175 (529)
T d1jdha_ 98 FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN--Q 175 (529)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC--H
T ss_pred HHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh--h
Confidence 2456778888999999999999999998876544411 112236788899999999999999999887775321 1
Q ss_pred hhhHHHH-hhChHHHHHHHHHHHHhccCCCCCCccchhhhhHhhhhcccccCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 000146 242 PVKTILF-EKMRDTMKKELEVELVNVSGTARPTRKIRAEQDKELGQELISEDVGPGPSEESTADVPPEIDEYELVDPVDI 320 (2052)
Q Consensus 242 ~l~~~L~-~~Lkp~qlkeLe~~f~~~~~~~~p~R~~rs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~dl~~~vdI 320 (2052)
.-+..+. .+..+....-+ .... ..+ .+....... ..-+. +. +. -.. +++ ..+
T Consensus 176 ~~~~~~~~~~~~~~L~~ll----~~~~--~~~---~~~~~~~~l--~~ls~---~~---~~-------~~~--~~~-~g~ 228 (529)
T d1jdha_ 176 ESKLIILASGGPQALVNIM----RTYT--YEK---LLWTTSRVL--KVLSV---CS---SN-------KPA--IVE-AGG 228 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHH----HHCC--CHH---HHHHHHHHH--HHHTT---ST---TH-------HHH--HHH-TTH
T ss_pred HHHHHHHhcccchHHHHHH----Hhhh--hHH---HHHHHHHHH--hhhhc---cc---cc-------cch--hhh-hhh
Confidence 1111111 11111111111 1100 000 000000000 00000 00 00 000 000 000
Q ss_pred cCcCccchhhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhh---
Q 000146 321 LTPLEKSGFWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRT--- 397 (2052)
Q Consensus 321 l~kl~~~~f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~--- 397 (2052)
+ ..+...+.+.+...+..++..+..+...... ......+++.|.+.+.+.+..++..|+.+++.++.+-..
T Consensus 229 ---~--~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~-~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 302 (529)
T d1jdha_ 229 ---M--QALGLHLTDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 302 (529)
T ss_dssp ---H--HHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT-CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred ---h--hhHHHHhcccchhhhhhhhhHHHhccccccc-hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHH
Confidence 1 1234446667777888888888877643322 223467889999999988889999999999998753221
Q ss_pred cchhhhhhHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHhcCCCHH---------HHHHHHHHHhhc-CChHHHHHHHHH
Q 000146 398 HFSGSSRFLLPVLLEKLK--EKKPTVAESLTQTLQAMHKAGCLNLV---------DVVEDVKTSVKN-KVPLVRSLTLNW 465 (2052)
Q Consensus 398 ~f~~~~~~llp~LL~klk--dkK~~V~~aa~~aL~ai~~~~~~~l~---------~ll~~l~~~L~~-Knp~vR~~~l~~ 465 (2052)
.+.. ...++.++..+. ..++.+++.+..+|..+... ....+ ..++.+...+.+ .++.+...++..
T Consensus 303 ~i~~--~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~ 379 (529)
T d1jdha_ 303 MVCQ--VGGIEALVRTVLRAGDREDITEPAICALRHLTSR-HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379 (529)
T ss_dssp HHHH--TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS-STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHH--hhhHHHHHHHHHhhhcchhHHHHHHHHhhcccch-hhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHH
Confidence 1211 234555555442 34567888888888877643 11111 123445556654 345566666666
Q ss_pred HHHHHHhcChhHHHHhh-hhHHHHHHHhhcCCCh
Q 000146 466 VTFCIETSSKAAVLKVH-KDYVPICMECLNDGTP 498 (2052)
Q Consensus 466 L~~~l~~~~~~~l~~~l-~~l~p~l~k~l~Ds~~ 498 (2052)
+..+.. .+.. ..... ...++.++.++.+++.
T Consensus 380 l~~l~~-~~~~-~~~l~~~g~i~~L~~lL~~~~~ 411 (529)
T d1jdha_ 380 IRNLAL-CPAN-HAPLREQGAIPRLVQLLVRAHQ 411 (529)
T ss_dssp HHHHTT-SGGG-HHHHHHTTHHHHHHHHHHHHHH
T ss_pred Hhhcch-hhhh-hhhhhhcccHHHHHHHHhcCCH
Confidence 655432 2211 11111 2255566666654443
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.25 E-value=2.1e-05 Score=77.44 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=85.4
Q ss_pred hcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhh
Q 000146 373 ITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLPVLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVK 452 (2052)
Q Consensus 373 l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~ 452 (2052)
|+|.|..|+..|+.+++.+ + ...++.|++.+.+..+.||..+..+|..+ .-...++.|...++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~-------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~------~~~~~~~~L~~~l~ 63 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----G-------DEAFEPLLESLSNEDWRIRGAAAWIIGNF------QDERAVEPLIKLLE 63 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----S-------STTHHHHHHGGGCSCHHHHHHHHHHHGGG------CSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHh----C-------HHHHHHHHHHHcCCCHHHHHHHHHHHHhc------chhhhHHHHHhhhc
Confidence 4577777777777776543 2 12467888999999999999888777543 23567888889999
Q ss_pred cCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHHHHHhhcCCChHHHHHHHHHHH
Q 000146 453 NKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPICMECLNDGTPEVRDAAFSVLA 509 (2052)
Q Consensus 453 ~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~l~k~l~Ds~~~VR~aA~~~l~ 509 (2052)
+.+|.||..++..|..+ . + +...+.+.++++|.++.||.+|..+|.
T Consensus 64 d~~~~VR~~a~~aL~~i-~--~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 64 DDSGFVRSGAARSLEQI-G--G--------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HCCTHHHHHHHHHHHHH-C--S--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred cchhHHHHHHHHHHHHh-C--c--------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999998764 1 1 456788889999999999999999875
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.00033 Score=79.68 Aligned_cols=176 Identities=11% Similarity=0.099 Sum_probs=122.6
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh-hhHHHHHHHH
Q 000146 904 PDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS-SKGVLSDILK 982 (2052)
Q Consensus 904 ~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~-~~~llp~ll~ 982 (2052)
.++.+|..|++.|..+++.....-.-...|-+...+...+.+.+..|+..|+.+|+.++..-...-... -...+|.++.
T Consensus 29 ~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~ 108 (264)
T d1xqra1 29 ADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 108 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 357889999999999985321100000124455556667888999999999999999996432221122 2457899999
Q ss_pred HhC-CCcHHHHHHHHHHHHHHHHhcCc-------hhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCC-ch--hh
Q 000146 983 CLG-DNKKHMRECTLTVLDAWLAAVHL-------DKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFP-DA--AH 1051 (2052)
Q Consensus 983 ~l~-D~k~~VR~aa~~aL~~i~~~~~l-------~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~-~~--~~ 1051 (2052)
.+. +..+.+|..+..+|..++.+... ...++.+...|.+. ++.++..++..+...+...+... .+ ..
T Consensus 109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 186 (264)
T d1xqra1 109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 186 (264)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC--chHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence 885 67888999999999999876531 22467788888865 67888888877776655433211 11 23
Q ss_pred hHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 000146 1052 LLKPASIAMTDKSSDVRKAAEACIVEILRA 1081 (2052)
Q Consensus 1052 ll~pl~~~L~D~~~dVRkaA~~~L~~l~~~ 1081 (2052)
.++.++..|.+.+++||..|..+|..+...
T Consensus 187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~ 216 (264)
T d1xqra1 187 MVQQLVALVRTEHSPFHEHVLGALCSLVTD 216 (264)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 466688889999999999999999877643
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.01 E-value=1.1 Score=58.37 Aligned_cols=182 Identities=13% Similarity=0.118 Sum_probs=113.4
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHHHhccc-----------cCCCCChhhHHHHHHhhhccchH-----HHHHHHHHHH
Q 000146 895 PTLVKSLESPDWKVRLESIEAVNKILEEANK-----------RIQPAGTGELFGGLRGRLYDSNK-----NLVMATLITL 958 (2052)
Q Consensus 895 ~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~-----------~I~~~~~~eL~~aL~~rL~DsN~-----~V~~~Al~~l 958 (2052)
+.++..+.+.+-.+|..|...+..++..... .+.|. +.+++..|...+.+.+. .+....+.++
T Consensus 499 ~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~-l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l 577 (959)
T d1wa5c_ 499 PILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNS-TEILLKNLIALILKHGSSPEKLAENEFLMRSI 577 (959)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTT-HHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHH
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhh-HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 3455666777778899999999888753211 12222 46667767666644332 2234578889
Q ss_pred HHHHHHhChhhHHhhhHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHhcCch-------hhHHHHHHHHhcCccCh
Q 000146 959 GAVASAMGPAVEKSSKGVLSDILKCLG-----DNKKHMRECTLTVLDAWLAAVHLD-------KMVPYVTTALTDAKLGA 1026 (2052)
Q Consensus 959 ~~la~alg~~~~~~~~~llp~ll~~l~-----D~k~~VR~aa~~aL~~i~~~~~l~-------~ll~~l~~~L~~~k~np 1026 (2052)
..++..++..+.+|...+++.+...+. +.+...+..+.+++..++...+.+ .++|.+...+.+. ..
T Consensus 578 ~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~--~~ 655 (959)
T d1wa5c_ 578 FRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED--IQ 655 (959)
T ss_dssp HHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT--CT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhcc--ch
Confidence 999999999999999988888876552 345678888999999998877632 2455555555543 23
Q ss_pred hHHHHHHHHHHHHhccCCC-CCchhhhHHHHHhhc-CCCCHHHHHHHHHHHHHHHH
Q 000146 1027 EGRKDLFDWLSKQLTGLSG-FPDAAHLLKPASIAM-TDKSSDVRKAAEACIVEILR 1080 (2052)
Q Consensus 1027 ~~R~~~l~~L~~~l~~~~~-~~~~~~ll~pl~~~L-~D~~~dVRkaA~~~L~~l~~ 1080 (2052)
....+++..+...+...+. .+....++.+++... .+... .......++..++.
T Consensus 656 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~l~~~~~ 710 (959)
T d1wa5c_ 656 EFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG-NIPAVTRLLKSFIK 710 (959)
T ss_dssp TTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT-THHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCccHHHHHHHHHHhhHHHHHHhh-hHHHHHHHHHHHHH
Confidence 4455666666655554443 345566677766433 34333 33344444444443
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.00 E-value=0.00014 Score=71.34 Aligned_cols=109 Identities=15% Similarity=0.136 Sum_probs=85.2
Q ss_pred hccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcC
Q 000146 943 LYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDA 1022 (2052)
Q Consensus 943 L~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~ 1022 (2052)
|+|.|..|+..|+..|+.+ |+ ..++.++..|.|.++.||..+..+|.. .+-...++.+...|.++
T Consensus 1 L~D~~~~VR~~A~~aL~~~----~~-------~~~~~L~~~l~d~~~~vR~~a~~~L~~----~~~~~~~~~L~~~l~d~ 65 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRM----GD-------EAFEPLLESLSNEDWRIRGAAAWIIGN----FQDERAVEPLIKLLEDD 65 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSC----SS-------TTHHHHHHGGGCSCHHHHHHHHHHHGG----GCSHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHh----CH-------HHHHHHHHHHcCCCHHHHHHHHHHHHh----cchhhhHHHHHhhhccc
Confidence 5678888888887776643 32 235778899999999999999888864 34566788899999887
Q ss_pred ccChhHHHHHHHHHHHHhccCCCCCchhhhHHHHHhhcCCCCHHHHHHHHHHHH
Q 000146 1023 KLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPASIAMTDKSSDVRKAAEACIV 1076 (2052)
Q Consensus 1023 k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl~~~L~D~~~dVRkaA~~~L~ 1076 (2052)
++.+|..++..|.+. . ....+..+...++|.+++||.+|..+|.
T Consensus 66 --~~~VR~~a~~aL~~i-~-------~~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 66 --SGFVRSGAARSLEQI-G-------GERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp --CTHHHHHHHHHHHHH-C-------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred --hhHHHHHHHHHHHHh-C-------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 689999999998753 1 1445666788899999999999988774
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.16 Score=59.40 Aligned_cols=388 Identities=9% Similarity=0.008 Sum_probs=190.7
Q ss_pred HHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHcCCCchhhHH--HHHHHHHHhhhc--hhhhHHHHHHHHHHHhhhCh
Q 000146 679 EILVRLVCMLPGWSEKNVQVQQQVIEVINYLAATATKFPKKCVV--LCLLGISERVAD--IKTRAHAMKCLTTFSEAVGP 754 (2052)
Q Consensus 679 ~~Lv~~L~~~pg~~DsN~qV~~~~Le~l~~l~~~~~~~~~~~~~--~il~~LveKlgd--~K~r~~a~e~L~~l~E~~~~ 754 (2052)
..|+.+| +.+|..|+..+..+|..+...... .+..+. -.+|.|+.-+.+ .+++..|..+|..++...+.
T Consensus 5 p~lv~~L------~~~~~~~~~~a~~~l~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~ 77 (457)
T d1xm9a1 5 PKAVQYL------SSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTT 77 (457)
T ss_dssp HHHHHHH------HSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHHh------CCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 4466665 345677888888888877643222 222222 247888887765 56898998899888743221
Q ss_pred h--H-----HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCCCCh-HhHHHHHH---------------hhCCCCCc
Q 000146 755 G--F-----IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSHLKL-KDLIDFCK---------------DTGLQSSA 811 (2052)
Q Consensus 755 ~--~-----Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~l~~-k~li~~l~---------------~~gL~~~n 811 (2052)
. . .+..++..+....++.++..++..|..+........... ..+...+. .. ....+
T Consensus 78 ~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~ 156 (457)
T d1xm9a1 78 NKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMS-REVVD 156 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC----------CCC
T ss_pred HHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhh-ccccc
Confidence 1 1 256666766667899999888888887765322210000 01111111 11 35567
Q ss_pred HHHHHHHHHHHHHHHHhhChhhHh-hhhhccHHHHHHHHHHHhcCCCCCCCCCc--ccccccccc-CCCCCCCCCCCCcc
Q 000146 812 AATRNATIKLLGALHKFVGPDIKG-FLADVKPALLSALDAEYEKNPFEGTVVPK--KTVRASEST-SSVSSGGSDGLPRE 887 (2052)
Q Consensus 812 ~~VR~aA~~ll~~Ly~~~G~~l~~-~L~~lkP~ll~~Le~efeK~~~~~~p~p~--r~~r~~~~~-~~~~~~~~d~lpr~ 887 (2052)
+.|+..+..++..+.......-.. .-.++-+.+...+.....+.......... ...+..... ..........+...
T Consensus 157 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (457)
T d1xm9a1 157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhh
Confidence 888888877776554322111111 11345567777777666554321100000 000000000 00000000000000
Q ss_pred cccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCC-----ChhhHHHHHHhhhc-cchHHHHHHHHHHHHHH
Q 000146 888 DISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPA-----GTGELFGGLRGRLY-DSNKNLVMATLITLGAV 961 (2052)
Q Consensus 888 dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~-----~~~eL~~aL~~rL~-DsN~~V~~~Al~~l~~l 961 (2052)
.............+....-..+.. .....+. .....+. .....+..|...+. ..+..+...++..+..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l 311 (457)
T d1xm9a1 237 ARNAYTEKSSTGCFSNKSDKMMNN---NYDCPLP--EEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL 311 (457)
T ss_dssp C-------------------------------CC--CCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHhhhhhhhhhHHHHHH---HHhhhhH--HhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 000000000000000000000000 0000000 0000011 11345566666553 34566666667766666
Q ss_pred HHHhChhhHHh------hhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCc-----hhhHHHHHHHHhcC----ccCh
Q 000146 962 ASAMGPAVEKS------SKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVHL-----DKMVPYVTTALTDA----KLGA 1026 (2052)
Q Consensus 962 a~alg~~~~~~------~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l-----~~ll~~l~~~L~~~----k~np 1026 (2052)
+.......... -...+|.++..+.+....++.++..++..+...... ...++.+...|... ..++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~ 391 (457)
T d1xm9a1 312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSE 391 (457)
T ss_dssp TTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHH
T ss_pred hhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcH
Confidence 54332211111 124689999999999999999999999988764432 22345555666421 1125
Q ss_pred hHHHHHHHHHHHHhccCCCC-Cc--hhhhHHHHHhhc-CCCCHHHHHHHHHHHHHHH
Q 000146 1027 EGRKDLFDWLSKQLTGLSGF-PD--AAHLLKPASIAM-TDKSSDVRKAAEACIVEIL 1079 (2052)
Q Consensus 1027 ~~R~~~l~~L~~~l~~~~~~-~~--~~~ll~pl~~~L-~D~~~dVRkaA~~~L~~l~ 1079 (2052)
+++..++..|.......+.. .. -...+++|+..+ .+.+..|+++|..+|..++
T Consensus 392 ~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~ 448 (457)
T d1xm9a1 392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 68888998888766443221 01 123567788876 4567899999998887664
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=5.2 Score=51.71 Aligned_cols=307 Identities=10% Similarity=0.066 Sum_probs=168.2
Q ss_pred hhhHHHHHHHHHHHhhhChhH---HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHhCCCC----------C--ChHhHHH
Q 000146 736 KTRAHAMKCLTTFSEAVGPGF---IFERLYKIMKDHKNPKVLSEGILWMVSAVEDFGVSH----------L--KLKDLID 800 (2052)
Q Consensus 736 K~r~~a~e~L~~l~E~~~~~~---Vl~~L~~~l~~~KnpKv~~e~L~~L~~~i~~fG~~~----------l--~~k~li~ 800 (2052)
-+|..+..++..+++...++. ++..++..+ .+.++.|+..++..+..++....... + .+..++.
T Consensus 473 ~lr~~~~~~i~~~~~~~~~~~~~~~~~~l~~~L-~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~ 551 (959)
T d1wa5c_ 473 ILRVDAIKYIYTFRNQLTKAQLIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLK 551 (959)
T ss_dssp HHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHHHHHH
Confidence 367777778888887665543 444455543 57889999999998888876433211 1 1233443
Q ss_pred HHHhhCCCCC-----cHHHHHHHHHHHHHHHHhhChhhHhhhhhccHHHHHHHHHHHhcCCCCCCCCCccccccccccCC
Q 000146 801 FCKDTGLQSS-----AAATRNATIKLLGALHKFVGPDIKGFLADVKPALLSALDAEYEKNPFEGTVVPKKTVRASESTSS 875 (2052)
Q Consensus 801 ~l~~~gL~~~-----n~~VR~aA~~ll~~Ly~~~G~~l~~~L~~lkP~ll~~Le~efeK~~~~~~p~p~r~~r~~~~~~~ 875 (2052)
.+... +... +..++.....++..+-...++.+.++...+-+.+...+... ...
T Consensus 552 ~L~~~-l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~----~~~----------------- 609 (959)
T d1wa5c_ 552 NLIAL-ILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIM----AKN----------------- 609 (959)
T ss_dssp HHHHH-HHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHH----TTS-----------------
T ss_pred HHHHH-HHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcC-----------------
Confidence 33322 2222 12234456677777777777777776655544444433322 110
Q ss_pred CCCCCCCCCCcccccccccHHHHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHH
Q 000146 876 VSSGGSDGLPREDISGKFTPTLVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATL 955 (2052)
Q Consensus 876 ~~~~~~d~lpr~dIs~~i~~~ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al 955 (2052)
..+-..+...++.+..++...++.........+++.+...+..........++
T Consensus 610 ---------------------------~~~~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~ 662 (959)
T d1wa5c_ 610 ---------------------------PSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVF 662 (959)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHH
T ss_pred ---------------------------ccchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 00112234456667666653222111122244566666666554455666778
Q ss_pred HHHHHHHHHhChhhHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhc-----CchhhHHHHHHHHhcCccChhHHH
Q 000146 956 ITLGAVASAMGPAVEKSSKGVLSDILKCLGDNKKHMRECTLTVLDAWLAAV-----HLDKMVPYVTTALTDAKLGAEGRK 1030 (2052)
Q Consensus 956 ~~l~~la~alg~~~~~~~~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~-----~l~~ll~~l~~~L~~~k~np~~R~ 1030 (2052)
.++..+....+. +.+....+++.++...-+........+...+..++... +...++..+...+... ..+.
T Consensus 663 ~l~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~ 737 (959)
T d1wa5c_ 663 QIIAFVVEQSAT-IPESIKPLAQPLLAPNVWELKGNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASK----AYEV 737 (959)
T ss_dssp HHHHHHHHHCSS-CCTTTGGGHHHHTSGGGGCCTTTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCT----TTHH
T ss_pred HHHHHHHHhCCC-ccHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHHCCC----cchH
Confidence 888777766542 22333344555554333333334455666777766543 2344555565666543 2356
Q ss_pred HHHHHHHHHhccCCC---CCchhhhHHHHHhhcC-CCCHHHHHHHHHHHHHHHHHcChhHHHHHhccCChH
Q 000146 1031 DLFDWLSKQLTGLSG---FPDAAHLLKPASIAMT-DKSSDVRKAAEACIVEILRAGGQETIEKNLKDIQGP 1097 (2052)
Q Consensus 1031 ~~l~~L~~~l~~~~~---~~~~~~ll~pl~~~L~-D~~~dVRkaA~~~L~~l~~~~G~e~~~~~l~~L~~~ 1097 (2052)
+++..+...+...+. .+.+..++..++..|. ...+.+-....-++..+....+.+.+.+.+..+.+.
T Consensus 738 ~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 808 (959)
T d1wa5c_ 738 HGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDG 808 (959)
T ss_dssp HHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHCchhhhHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhchh
Confidence 666666666655543 2344555566667774 445555555555666666666777777777776543
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.66 Score=53.83 Aligned_cols=142 Identities=11% Similarity=0.034 Sum_probs=92.7
Q ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhcC-----
Q 000146 935 LFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLSDILKCLGDNKKHMRECTLTVLDAWLAAVH----- 1007 (2052)
Q Consensus 935 L~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~----- 1007 (2052)
.++.|.+.|..+|..++..|+.+|+.++..- ...+..+ ...+|.+++.|.+.++.+|..|..+|..++....
T Consensus 3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 81 (457)
T d1xm9a1 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4678888999999999999999999998432 2223322 3468999999999999999999999998863221
Q ss_pred --chhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCc-hhhhHHHHHhh----------------cCCCCHHHH
Q 000146 1008 --LDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPD-AAHLLKPASIA----------------MTDKSSDVR 1068 (2052)
Q Consensus 1008 --l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~-~~~ll~pl~~~----------------L~D~~~dVR 1068 (2052)
-...++.+...+.+.. ++.+|..++..+............ ....+.+++.. ....+.+++
T Consensus 82 i~~~g~v~~li~~l~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 160 (457)
T d1xm9a1 82 TRRQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHCCChHHHHHHHhccC-cHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence 1113566667676432 578888888888765543222111 11112222221 245577888
Q ss_pred HHHHHHHHHH
Q 000146 1069 KAAEACIVEI 1078 (2052)
Q Consensus 1069 kaA~~~L~~l 1078 (2052)
..+..++..+
T Consensus 161 ~~a~~~l~~~ 170 (457)
T d1xm9a1 161 FNATGCLRNL 170 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777776544
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=93.31 E-value=0.011 Score=65.24 Aligned_cols=113 Identities=15% Similarity=0.101 Sum_probs=75.9
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHH
Q 000146 897 LVKSLESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGV 976 (2052)
Q Consensus 897 ll~~l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~l 976 (2052)
|...+.|++|.+|..+.+.+ . ...|...++|.+..|+..+.. .++.
T Consensus 119 L~~Ll~D~d~~VR~~aa~~~-----------~-------~~~L~~L~~D~d~~VR~~aA~-------~~~~--------- 164 (233)
T d1lrva_ 119 LEQMAADRDYLVRAYVVQRI-----------P-------PGRLFRFMRDEDRQVRKLVAK-------RLPE--------- 164 (233)
T ss_dssp GGGGTTCSSHHHHHHHHHHS-----------C-------GGGGGGTTTCSCHHHHHHHHH-------HSCG---------
T ss_pred HHHHhcCCCHHHHHHHHhcc-----------c-------hhHHHHHhcCCCHHHHHHHHH-------hcCH---------
Confidence 44567899999999987542 1 122345668999999876654 3332
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhhHHHH
Q 000146 977 LSDILKCLGDNKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHLLKPA 1056 (2052)
Q Consensus 977 lp~ll~~l~D~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~ll~pl 1056 (2052)
+.++..++|..+.||..+...| +. +.+...+.++ ++.+|..+...+ ...+
T Consensus 165 -~~L~~l~~D~d~~VR~~aa~~L-------~~----~~L~~l~~D~--d~~VR~aaae~~----------------~~~l 214 (233)
T d1lrva_ 165 -ESLGLMTQDPEPEVRRIVASRL-------RG----DDLLELLHDP--DWTVRLAAVEHA----------------SLEA 214 (233)
T ss_dssp -GGGGGSTTCSSHHHHHHHHHHC-------CG----GGGGGGGGCS--SHHHHHHHHHHS----------------CHHH
T ss_pred -HHHHHHccCCCHHHHHHHHHhc-------Cc----HHHHHHHhCC--CHHHHHHHHHhc----------------cHHH
Confidence 3456678899999998876544 32 2334445555 688998876421 1236
Q ss_pred HhhcCCCCHHHHHHHHH
Q 000146 1057 SIAMTDKSSDVRKAAEA 1073 (2052)
Q Consensus 1057 ~~~L~D~~~dVRkaA~~ 1073 (2052)
+..|.|.+++||.+|.+
T Consensus 215 l~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 215 LRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHCCCCCHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHH
Confidence 67789999999999864
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.55 Score=47.21 Aligned_cols=98 Identities=16% Similarity=0.266 Sum_probs=76.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHh--hhHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKS--SKGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~--~~~llp 978 (2052)
+...||. ++-.|.+++.. .+..-.+.+.+|++||...|.+++..||.++..+++.+|+.|... .+.|+.
T Consensus 21 l~~~dw~----~ileicD~I~~-----~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~ 91 (145)
T d1ujka_ 21 NKELDWA----SINGFCEQLNE-----DFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLN 91 (145)
T ss_dssp CSSCCHH----HHHHHHHHHTS-----STTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHH
Confidence 4556894 45555555531 233347899999999999999999999999999999999999754 355777
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000146 979 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 979 ~ll~~l~D------~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
.+.+.+.+ ....|++-+...+..|....+
T Consensus 92 ~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp 126 (145)
T d1ujka_ 92 ELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLP 126 (145)
T ss_dssp HHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence 77777764 456799999999999998875
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.82 E-value=0.68 Score=46.84 Aligned_cols=98 Identities=14% Similarity=0.237 Sum_probs=76.6
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+.+.||.. +-.|.+++... +..-.+.+.+|++||...|.+++..||.++..+++.+|..|...+ +.|+.
T Consensus 15 l~~~dw~~----ileicD~In~~-----~~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~ 85 (151)
T d1juqa_ 15 NRQEDWEY----IIGFCDQINKE-----LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN 85 (151)
T ss_dssp CSSCCHHH----HHHHHHHHHHS-----TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH
T ss_pred CCCcCHHH----HHHHHHHHhcC-----CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHH
Confidence 45678954 44455555421 222478999999999999999999999999999999999997653 55777
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcC
Q 000146 979 DILKCLGD------NKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 979 ~ll~~l~D------~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
.+.+.+.. ....|++-+...+..|....+
T Consensus 86 ~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~ 120 (151)
T d1juqa_ 86 ELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP 120 (151)
T ss_dssp HHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHcc
Confidence 77777764 356799999999999998875
|
| >d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.26 E-value=0.61 Score=46.86 Aligned_cols=99 Identities=17% Similarity=0.316 Sum_probs=75.2
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+...||. ++-.|.+++.. .+..-.+.+.+|+++|++.|.+++..|+.++..++..+|..|...+ +.++.
T Consensus 18 ~~~~dw~----~il~icD~I~~-----~~~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~ 88 (145)
T d1dvpa1 18 RLEPDWP----SILLICDEINQ-----KDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCE 88 (145)
T ss_dssp CSSCCHH----HHHHHHHHHHT-----TSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHH
T ss_pred CCCCCHH----HHHHHHHHHhC-----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHH
Confidence 4566895 45556566542 2333478999999999999999999999999999999999987543 44565
Q ss_pred HHHHHhCC-CcHHHHHHHHHHHHHHHHhcCc
Q 000146 979 DILKCLGD-NKKHMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 979 ~ll~~l~D-~k~~VR~aa~~aL~~i~~~~~l 1008 (2052)
.+...+.. ....|++-+.+.+..|....+-
T Consensus 89 ~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~ 119 (145)
T d1dvpa1 89 MFSSFLESTPHENVRQKMLELVQTWAYAFRS 119 (145)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 55555533 4667999999999999998753
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.45 E-value=1.3 Score=44.21 Aligned_cols=99 Identities=14% Similarity=0.253 Sum_probs=76.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSS--KGVLS 978 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~llp 978 (2052)
+...||. ++-.|.+++... +..-.+.+.+|+++|...|.+++..||.++..+++.+|+.|...+ +.|+.
T Consensus 14 ~~~~dw~----~il~icD~I~~~-----~~~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~ 84 (143)
T d1mhqa_ 14 MSEQDWS----AIQNFCEQVNTD-----PNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLN 84 (143)
T ss_dssp CSSCCHH----HHHHHHHHHHHS-----SHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHH
T ss_pred CCCcCHH----HHHHHHHHHHcC-----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH
Confidence 4567895 455555555421 222368999999999999999999999999999999999997553 45777
Q ss_pred HHHHHhCC------CcHHHHHHHHHHHHHHHHhcCc
Q 000146 979 DILKCLGD------NKKHMRECTLTVLDAWLAAVHL 1008 (2052)
Q Consensus 979 ~ll~~l~D------~k~~VR~aa~~aL~~i~~~~~l 1008 (2052)
.+...+.+ ....|++-+...+..|.....-
T Consensus 85 ~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~~ 120 (143)
T d1mhqa_ 85 ELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE 120 (143)
T ss_dssp HHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 77777654 3567999999999999998753
|
| >d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: Tom1 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.22 E-value=2.3 Score=42.85 Aligned_cols=98 Identities=18% Similarity=0.370 Sum_probs=70.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHhccccCCCCChhhHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHhChhhHHhh--hHHH
Q 000146 901 LESPDWKVRLESIEAVNKILEEANKRIQPAGTGELFGGLRGRLY-DSNKNLVMATLITLGAVASAMGPAVEKSS--KGVL 977 (2052)
Q Consensus 901 l~d~~Wk~R~eale~L~~ll~~a~~~I~~~~~~eL~~aL~~rL~-DsN~~V~~~Al~~l~~la~alg~~~~~~~--~~ll 977 (2052)
+...||.. +-.|.+++.. .+..-.+.+.+|++||. ..|.+++..||.++..+++.+|..|...+ +.++
T Consensus 25 l~~~dw~~----il~icD~In~-----~~~~~k~a~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh~evas~~Fl 95 (153)
T d1elka_ 25 LQSEDWAL----NMEICDIINE-----TEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFV 95 (153)
T ss_dssp CSSCCHHH----HHHHHHHHHH-----SSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHH
T ss_pred CCcccHHH----HHHHHHHHhC-----CCcCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHH
Confidence 45568964 4445555542 12224789999999995 56999999999999999999999986542 4455
Q ss_pred HHHH-HHhC---CCcHHHHHHHHHHHHHHHHhcC
Q 000146 978 SDIL-KCLG---DNKKHMRECTLTVLDAWLAAVH 1007 (2052)
Q Consensus 978 p~ll-~~l~---D~k~~VR~aa~~aL~~i~~~~~ 1007 (2052)
-.++ ..+. +....|++-+...+..|.....
T Consensus 96 ~~ll~~~~~~~~~~~~~Vk~kil~li~~W~~~f~ 129 (153)
T d1elka_ 96 ESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFR 129 (153)
T ss_dssp HHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 5543 2222 3445699999999999988764
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=83.70 E-value=0.16 Score=55.61 Aligned_cols=113 Identities=17% Similarity=0.131 Sum_probs=77.1
Q ss_pred hhhhcccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhhhhhHHH
Q 000146 329 FWEGVKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGSSRFLLP 408 (2052)
Q Consensus 329 f~~~l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~~~~llp 408 (2052)
+...+.+.+|..|..+...+. ...|...++|.+..|+..++.- ++ .+
T Consensus 119 L~~Ll~D~d~~VR~~aa~~~~----------------~~~L~~L~~D~d~~VR~~aA~~-------~~----------~~ 165 (233)
T d1lrva_ 119 LEQMAADRDYLVRAYVVQRIP----------------PGRLFRFMRDEDRQVRKLVAKR-------LP----------EE 165 (233)
T ss_dssp GGGGTTCSSHHHHHHHHHHSC----------------GGGGGGTTTCSCHHHHHHHHHH-------SC----------GG
T ss_pred HHHHhcCCCHHHHHHHHhccc----------------hhHHHHHhcCCCHHHHHHHHHh-------cC----------HH
Confidence 445578899999999876421 1234556679999998877642 22 13
Q ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhcChhHHHHhhhhHHHH
Q 000146 409 VLLEKLKEKKPTVAESLTQTLQAMHKAGCLNLVDVVEDVKTSVKNKVPLVRSLTLNWVTFCIETSSKAAVLKVHKDYVPI 488 (2052)
Q Consensus 409 ~LL~klkdkK~~V~~aa~~aL~ai~~~~~~~l~~ll~~l~~~L~~Knp~vR~~~l~~L~~~l~~~~~~~l~~~l~~l~p~ 488 (2052)
.|+..++|..+.||..+...+. . +.|...+++.+|.||..+.. +. .+.
T Consensus 166 ~L~~l~~D~d~~VR~~aa~~L~---------~----~~L~~l~~D~d~~VR~aaae-------~~------------~~~ 213 (233)
T d1lrva_ 166 SLGLMTQDPEPEVRRIVASRLR---------G----DDLLELLHDPDWTVRLAAVE-------HA------------SLE 213 (233)
T ss_dssp GGGGSTTCSSHHHHHHHHHHCC---------G----GGGGGGGGCSSHHHHHHHHH-------HS------------CHH
T ss_pred HHHHHccCCCHHHHHHHHHhcC---------c----HHHHHHHhCCCHHHHHHHHH-------hc------------cHH
Confidence 4556678999999987654331 1 23445678999999988752 11 134
Q ss_pred HHHhhcCCChHHHHHHHH
Q 000146 489 CMECLNDGTPEVRDAAFS 506 (2052)
Q Consensus 489 l~k~l~Ds~~~VR~aA~~ 506 (2052)
+...|+|.+++||.+|.+
T Consensus 214 ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 214 ALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp HHHHCCCCCHHHHHHHHC
T ss_pred HHHHhCCCCHHHHHHHHH
Confidence 556789999999999875
|
| >d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.45 E-value=4.3 Score=40.64 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=72.8
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHH
Q 000146 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 410 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 410 (2052)
+.+.+|. ++.++..+++.. +..-.+.+++|+++|+..|+.++..|+.++..+.+-.|..|... -+.++..|
T Consensus 15 l~~~dw~----~ileicD~In~~---~~~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l 87 (151)
T d1juqa_ 15 NRQEDWE----YIIGFCDQINKE---LEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL 87 (151)
T ss_dssp CSSCCHH----HHHHHHHHHHHS---TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CCCcCHH----HHHHHHHHHhcC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHH
Confidence 5678884 445566655321 12346889999999999999999999999999999999998755 35677777
Q ss_pred HHHhccC------cHHHHHHHHHHHHHHHHh
Q 000146 411 LEKLKEK------KPTVAESLTQTLQAMHKA 435 (2052)
Q Consensus 411 L~klkdk------K~~V~~aa~~aL~ai~~~ 435 (2052)
...+..+ ...|++-+.+.+..|...
T Consensus 88 ~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~ 118 (151)
T d1juqa_ 88 IKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 118 (151)
T ss_dssp HHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcccCCCCcccHHHHHHHHHHHHHHHHH
Confidence 7766543 456888888888888775
|
| >d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.14 E-value=4.5 Score=40.16 Aligned_cols=96 Identities=13% Similarity=0.141 Sum_probs=73.7
Q ss_pred cccCChHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHhhhcchhh--hhhHHHHH
Q 000146 333 VKATKWSERKDAVAELTKLASTKRIAPGDFTEVCRTLKKLITDVNIAVAVEAIQAIGNLARGLRTHFSGS--SRFLLPVL 410 (2052)
Q Consensus 333 l~s~kWkeR~eaL~~L~~L~~~~ki~~~dy~~l~~~L~k~l~D~N~~V~~~A~~~l~~La~~L~~~f~~~--~~~llp~L 410 (2052)
+.+.+| +++.+|..+++.. +..-.+.+++|+++|...|+.+...|+.+++.+.+--|+.|... -+.++..|
T Consensus 21 l~~~dw----~~ileicD~I~~~---~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L 93 (145)
T d1ujka_ 21 NKELDW----ASINGFCEQLNED---FEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNEL 93 (145)
T ss_dssp CSSCCH----HHHHHHHHHHTSS---TTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHH
T ss_pred CCCcCH----HHHHHHHHHHhCC---CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Confidence 566888 5566677766432 22346889999999999999999999999999999999888644 45677777
Q ss_pred HHHhcc------CcHHHHHHHHHHHHHHHHh
Q 000146 411 LEKLKE------KKPTVAESLTQTLQAMHKA 435 (2052)
Q Consensus 411 L~klkd------kK~~V~~aa~~aL~ai~~~ 435 (2052)
...++. ....|++-+...+..|...
T Consensus 94 ~kli~~k~~~~~~~~~Vk~kil~li~~W~~~ 124 (145)
T d1ujka_ 94 IKVVSPKYLGSRTSEKVKNKILELLYSWTVG 124 (145)
T ss_dssp HHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 776654 3457888899999988875
|
| >d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ENTH/VHS domain family: VHS domain domain: ADP-ribosylation factor binding protein Gga2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.62 E-value=1.4 Score=43.92 Aligned_cols=75 Identities=15% Similarity=0.218 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHhhccChhhHHHHHHHHHHHHHHhCCCC---cChHHHHhhhhhhhCC------CChhHHHHHHHHHHHHH
Q 000146 165 VDVFLDVMEKAIKNKVAKAVVPAIDVMFQALSEFGAKI---IPPKRILKMLPELFDH------QDQNVRASSKGLTLELC 235 (2052)
Q Consensus 165 ~~~v~e~Ll~~l~~K~PKvv~~~l~~L~~~l~~FG~~~---i~~k~il~~l~~ll~~------~dk~VR~~a~~l~vely 235 (2052)
+...+..|.+-+.++||+++.-++..|..++++=|... +.-+.++..|.+++.. .+..||+....++.+.+
T Consensus 36 ~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa 115 (143)
T d1mhqa_ 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (143)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 45567778888999999999999999999999988732 4457788888888763 57789999999988777
Q ss_pred HhhC
Q 000146 236 RWIG 239 (2052)
Q Consensus 236 ~~lG 239 (2052)
.+..
T Consensus 116 ~~f~ 119 (143)
T d1mhqa_ 116 VWFP 119 (143)
T ss_dssp HHCT
T ss_pred HHcC
Confidence 6663
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=80.04 E-value=25 Score=39.53 Aligned_cols=162 Identities=10% Similarity=0.041 Sum_probs=102.7
Q ss_pred CChHHHHHHHHHHHHHHHhccccCCCC----ChhhHHHHHHhhhccchHHHHHHHHHHHHHHHHHhChhhHHhhhHHHHH
Q 000146 904 PDWKVRLESIEAVNKILEEANKRIQPA----GTGELFGGLRGRLYDSNKNLVMATLITLGAVASAMGPAVEKSSKGVLSD 979 (2052)
Q Consensus 904 ~~Wk~R~eale~L~~ll~~a~~~I~~~----~~~eL~~aL~~rL~DsN~~V~~~Al~~l~~la~alg~~~~~~~~~llp~ 979 (2052)
.++..|..++-.++.++... ..-.+. ....+...|.+.+...+..-+..+|+.||.+. . ...++.
T Consensus 139 ~~~~l~~~a~La~gslv~~~-c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g----~------p~~i~~ 207 (336)
T d1lsha1 139 NRPILRKTAVLGYGSLVFRY-CANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG----Q------PNSIKK 207 (336)
T ss_dssp TCHHHHHHHHHHHHHHHHHH-HTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----C------GGGHHH
T ss_pred cchhHHHHHHHHHHHHHHHH-hcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC----C------HhHHHH
Confidence 47889999999999998742 111111 12334444444444455555666777776543 1 223444
Q ss_pred HHHHhCC-------CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHhcCccChhHHHHHHHHHHHHhccCCCCCchhhh
Q 000146 980 ILKCLGD-------NKKHMRECTLTVLDAWLAAVHLDKMVPYVTTALTDAKLGAEGRKDLFDWLSKQLTGLSGFPDAAHL 1052 (2052)
Q Consensus 980 ll~~l~D-------~k~~VR~aa~~aL~~i~~~~~l~~ll~~l~~~L~~~k~np~~R~~~l~~L~~~l~~~~~~~~~~~l 1052 (2052)
+...+.+ ....+|.+|+.+|..+..+. ...+.+.+...+.+...++++|..++..|.++ .+ . ...
T Consensus 208 l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t---~P---~-~~~ 279 (336)
T d1lsha1 208 IQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLNVAIKSELRIRSCIVFFES---KP---S-VAL 279 (336)
T ss_dssp HHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHT---CC---C-HHH
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CC---C-HHH
Confidence 4444432 35679999999999886643 45667778888877655799999888777542 11 1 334
Q ss_pred HHHHHhhc-CCCCHHHHHHHHHHHHHHHHHcCh
Q 000146 1053 LKPASIAM-TDKSSDVRKAAEACIVEILRAGGQ 1084 (2052)
Q Consensus 1053 l~pl~~~L-~D~~~dVRkaA~~~L~~l~~~~G~ 1084 (2052)
+.-+...+ .|++..|+......|..+...-.+
T Consensus 280 l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P 312 (336)
T d1lsha1 280 VSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 312 (336)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCc
Confidence 44455544 789999998888888777665554
|