Citrus Sinensis ID: 000149
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2037 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FKS4 | 2702 | Serine/threonine-protein | yes | no | 0.963 | 0.726 | 0.695 | 0.0 | |
| Q5Z987 | 2710 | Serine/threonine-protein | yes | no | 0.952 | 0.715 | 0.640 | 0.0 | |
| A2YH41 | 2710 | Serine/threonine-protein | N/A | no | 0.952 | 0.715 | 0.640 | 0.0 | |
| Q9DE14 | 2654 | Serine/threonine-protein | N/A | no | 0.661 | 0.507 | 0.320 | 0.0 | |
| Q13535 | 2644 | Serine/threonine-protein | yes | no | 0.669 | 0.515 | 0.314 | 0.0 | |
| Q9JKK8 | 2635 | Serine/threonine-protein | yes | no | 0.618 | 0.478 | 0.328 | 0.0 | |
| Q02099 | 2386 | Protein kinase rad3 OS=Sc | yes | no | 0.742 | 0.633 | 0.271 | 1e-147 | |
| Q54ER4 | 3157 | Probable serine/threonine | yes | no | 0.406 | 0.262 | 0.313 | 1e-126 | |
| Q9VXG8 | 2517 | Serine/threonine-protein | yes | no | 0.666 | 0.539 | 0.259 | 1e-122 | |
| Q59LR2 | 2325 | Serine/threonine-protein | N/A | no | 0.546 | 0.479 | 0.241 | 5e-98 |
| >sp|Q9FKS4|ATR_ARATH Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana GN=ATR PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 2792 bits (7238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1386/1992 (69%), Positives = 1630/1992 (81%), Gaps = 29/1992 (1%)
Query: 4 SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFP 63
SD +I +L D+F++V+A A IS+P+ V++SGLG L ++F +LE L +++ +K+ P
Sbjct: 607 SDFDIFSWSLSDDFEQVQAVAAISMPLKVLFSGLGALLHMFPKLEHLLEEKELMIKKAIP 666
Query: 64 ISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQE 123
S GFLSCL G SS D +K AC LLL+ ED +T++ LL+ F CSKCD + E
Sbjct: 667 QSLGFLSCLYG--SSTTDSEKTACHLLLH-EDLKKDETLNSLLQGFRCSKCDKFIEREDE 723
Query: 124 LSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+I+ ++ ++ H D+ L ++YF LYDESSEE QL+CV VIRRIL H + D+
Sbjct: 724 KHFRIIETPEMVKLKMDHHRDYFNLQSLYFNLLYDESSEETQLACVEVIRRILGHTSPDI 783
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
L++TRS+WI+C+++LL++ +R+AFC QIG F+Q ++S LFL E+A+ +S E +
Sbjct: 784 LVRTRSQWIRCLQYLLVHVNTDVREAFCAQIGIFVQHPIVSCLFLSEDATEKSCERNFFN 843
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303
+I+ + AA D L+++TLLE+TAE+M+AVDV S+ FL L LL++QLD+P++ VR+NAS+
Sbjct: 844 LIEHSLAAAKDLLVIQTLLETTAEVMVAVDVTSELFLICLFLLIDQLDHPNLIVRINASK 903
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI +SC+ H+KGG L+S A I NELFD LSVRL SRP +VREFAEA GVETEELV+
Sbjct: 904 LINRSCYIHVKGGFATLLSTASHIQNELFDNLSVRLTSRPNVVREFAEAVLGVETEELVR 963
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KM+PAVLPKL+V Q+N QA N +NELAK ++TD+VPLIV W+P+VLAFAL+Q +++ LL
Sbjct: 964 KMVPAVLPKLLVYWQENAQAANTLNELAKLIDTDVVPLIVNWLPRVLAFALNQEEDKNLL 1023
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
S L+ Y Q GSDNQEIFAAALPALLDEL+CFVD D+ E + RL R+P I+K+S VLT
Sbjct: 1024 SVLQLYHSQIGSDNQEIFAAALPALLDELVCFVDIADTPETDRRLQRLPDAIKKISKVLT 1083
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
EDLPGFL+NHFVGLLNSIDRKMLHA+D+ LQKQALKRI++LIEM+G +L+TYVPK++V
Sbjct: 1084 NAEDLPGFLQNHFVGLLNSIDRKMLHADDIFLQKQALKRIKLLIEMMGHYLSTYVPKLMV 1143
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLMHAI K++LQ EGL VLHFF +L+ VSPSS K+VISQ+FAALIPFLE++K+ P V L
Sbjct: 1144 LLMHAIEKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQIFAALIPFLEKEKEGPHVYL 1203
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
++VVKILE+LVLKNR I+K+HI EFPLLPSI +L E+N AIQEARG M+LKDQL V+G
Sbjct: 1204 DEVVKILEELVLKNRDIVKEHICEFPLLPSIPSLGELNNAIQEARGLMSLKDQLRDIVNG 1263
Query: 664 LNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
+ HENLNVRYMV CELSKLL ++EDV ALI GE SD+++LS+LI+ LL+GCAEESRT
Sbjct: 1264 MKHENLNVRYMVACELSKLLYNRNEDVAALIAGELVSDMEILSSLITYLLQGCAEESRTT 1323
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGA+GA+DPAKV+ SC RFKI+CSDDDLIFELI KHLARAFRAA DT
Sbjct: 1324 VGQRLKLVCADCLGAIGAIDPAKVRVASCSRFKIQCSDDDLIFELIHKHLARAFRAAQDT 1383
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
IIQDSAALAIQELLKIAGCE SL NV VL +EH+ V SG+ +E+ R
Sbjct: 1384 IIQDSAALAIQELLKIAGCEPSLAGNV-----VVLTPQEHVQVNVSGSRRCGGNNEVKDR 1438
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKE+IAPCLTSRFQLP+ SD S GPIY PSMSFRRW+ YWIRKLT A
Sbjct: 1439 GQKLWDRFSNYVKELIAPCLTSRFQLPNVSDPGSAGPIYRPSMSFRRWLSYWIRKLTAFA 1498
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSR SIF ACRGIVRHDMQTA YLLPYLVL+ VCHGTE ARL I++EILSVLDAAAS++
Sbjct: 1499 TGSRVSIFAACRGIVRHDMQTATYLLPYLVLDVVCHGTEAARLSISEEILSVLDAAASEN 1558
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELA---LSESLTSKQQGSKSKHPA 1019
SG +++ GQSEVC+QA+FTLLDNLGQWVDDVKQ +A +S +Q KSK
Sbjct: 1559 SGVTINSFGVGQSEVCVQAVFTLLDNLGQWVDDVKQGVALSSSLQSSGGRQVAPKSKDQV 1618
Query: 1020 --SSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPA 1077
S+ QD LL QC+YV LL AIPKVTLARASFRCQAYARSLMY ESHVR KSGS NPA
Sbjct: 1619 SNSTTEQDHLLVQCKYVLELLLAIPKVTLARASFRCQAYARSLMYLESHVRGKSGSLNPA 1678
Query: 1078 AEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSC 1137
AEK+G FE+ DVS LM IYS LDEPDGLSG A L KSL+LQD+LL NKKSGNWA+VFT+C
Sbjct: 1679 AEKTGIFENADVSSLMGIYSCLDEPDGLSGFASLSKSLNLQDQLLINKKSGNWADVFTAC 1738
Query: 1138 EQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197
EQALQMEPTSVQRHSDVLNCLLNMCH Q MVTHVDGLISR+P+YKKTWC QGVQAAWRLG
Sbjct: 1739 EQALQMEPTSVQRHSDVLNCLLNMCHHQTMVTHVDGLISRVPEYKKTWCTQGVQAAWRLG 1798
Query: 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIA 1257
+WDLMDEYL GAD EGLL SSS+SNASFD DVAKIL AMMKKD +SV++ I +SKQ LIA
Sbjct: 1799 KWDLMDEYLDGADAEGLLFSSSDSNASFDRDVAKILHAMMKKDQYSVAEGIAISKQALIA 1858
Query: 1258 PLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENR 1317
PLAAAGMDSYTRAYPF+VKLHLL+ELEDF A+L DS+LEKSF SD FSK + NWENR
Sbjct: 1859 PLAAAGMDSYTRAYPFVVKLHLLRELEDFQAVLNGDSYLEKSFSTSDQVFSKAVDNWENR 1918
Query: 1318 LKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA 1377
L++TQ SLW REPLLAFRR+VFGASGLGA+VGNCWLQYAKLCRLAGHYETA RAILEAQA
Sbjct: 1919 LRFTQSSLWTREPLLAFRRLVFGASGLGAQVGNCWLQYAKLCRLAGHYETAHRAILEAQA 1978
Query: 1378 SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437
SGAPNVHMEKAKLLW T+RSD AI ELQQ+LLN P VV ST ISSI SL + P NP P
Sbjct: 1979 SGAPNVHMEKAKLLWITKRSDSAIIELQQSLLNMPEGVVDSTVISSINSLLMAPPNPEPT 2038
Query: 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497
+ NTQ+ EK+D+AKTLLLYS+WIH++GQKQK+DV+ LY++V+EL P WEKGYF++AKY
Sbjct: 2039 VRNTQSFKEKKDVAKTLLLYSKWIHHSGQKQKKDVLNLYTQVKELLP-WEKGYFHLAKYY 2097
Query: 1498 DDVLVDARKRQEENSEIG-------------PSEKRWWFYVPDVLLFYAKGLHRGHKNLF 1544
D++ VDARK Q+E+S +EK W Y+ + FYAK LH GHKNLF
Sbjct: 2098 DELYVDARKCQQESSVFSSAGSKKGSVSSNLSTEKAGWDYLFKGMYFYAKALHSGHKNLF 2157
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVS 1604
QALPRLLTLWFDFG+I + +GS+ NK+LK+ + K+MS+MRGCLKDLP YQWLTVLPQLVS
Sbjct: 2158 QALPRLLTLWFDFGTIYKTSGSAGNKELKSTHMKIMSLMRGCLKDLPTYQWLTVLPQLVS 2217
Query: 1605 RICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAH 1664
RICHQN + V +VK+IITSVL Q+PQQGLWIMAAVSKST+P+RREAAAEIIQ A+KG
Sbjct: 2218 RICHQNADTVLMVKNIITSVLHQFPQQGLWIMAAVSKSTVPARREAAAEIIQGARKGFNQ 2277
Query: 1665 GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTV 1724
+ +NLF QF SL DH IKLCFH GQ +S+ INI+TEFSALKRMMPL IIMPIQQSLT+
Sbjct: 2278 SDRGHNLFIQFASLTDHFIKLCFHGGQPRSKVINIATEFSALKRMMPLDIIMPIQQSLTI 2337
Query: 1725 TLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK 1784
+LP N E S+ +FS SDLPTISGIADEAEILSSLQRPKKI+LLG+DGI+ PFLCK
Sbjct: 2338 SLPAFHMNNNERHSASVFSGSDLPTISGIADEAEILSSLQRPKKIILLGNDGIEYPFLCK 2397
Query: 1785 PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR 1844
PKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAV PLTEDCG+VEWVPHTRGLR
Sbjct: 2398 PKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVAPLTEDCGLVEWVPHTRGLR 2457
Query: 1845 NILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFS 1904
+ILQDIYISCGKFDRQKTNPQIKRIYDQ K E EMLKTKILPMFPPVFHKWFLTTFS
Sbjct: 2458 HILQDIYISCGKFDRQKTNPQIKRIYDQCAVK-KEYEMLKTKILPMFPPVFHKWFLTTFS 2516
Query: 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL 1964
EPAAWFR+RVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVDFSCLFDKGL L
Sbjct: 2517 EPAAWFRSRVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVDFSCLFDKGLQL 2576
Query: 1965 EKPELVPFRLTQ 1976
EKPELVPFRLTQ
Sbjct: 2577 EKPELVPFRLTQ 2588
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Probable serine/threonine kinase. Plays a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism. Seems to be required for the G2-phase checkpoint in response to replication blocks but not absolutely required in the G2-arrest response to double-strand breaks. May also be involved in the meiosis process. Required for the basal expression of RNR1 (ribonucleotide reductase large subunit). Acts in concert with telomerase to maintain telomeric DNA tracts. Not required for telomere length homeostasis. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q5Z987|ATR_ORYSJ Serine/threonine-protein kinase ATR OS=Oryza sativa subsp. japonica GN=Os06g0724700 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2569 bits (6658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1280/1998 (64%), Positives = 1574/1998 (78%), Gaps = 58/1998 (2%)
Query: 2 TESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRV 61
E D ++L+LA++ E E++ EA++SLP+IV++SG +L +F++LE++G C+K+ +
Sbjct: 628 AECDLQVLELAIQSETGELQNEALMSLPIIVLYSGPRMLGAMFRKLETIGTLGCKKLWKS 687
Query: 62 FPISFGFLSCLSGTCSSIVDWDKNACKLLL--NVEDDILSQTVDYLLENFWCSKCDTNVV 119
IS GFLSCL+GT + D N CKL L + E IL+ LL FWC +CD V
Sbjct: 688 IAISLGFLSCLNGT-TDCTDKVGNHCKLFLAKHCEQPILTLN---LLRGFWCPQCDVRTV 743
Query: 120 HNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHG 179
H ++ IV+ + + K+++F + +++F+FLY E+SEE +S V V+ RIL H
Sbjct: 744 HIED-QVPIVDIALSEDKNIDFKINMFKAHSLFFKFLYAETSEECIVSIVEVLPRILKHS 802
Query: 180 TRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENA-SSRSNE 238
+RDVLL + +W++C++FLLL++ KA+RDAF + + FL+ + LF D S ++
Sbjct: 803 SRDVLLDMKFQWVQCVDFLLLHEMKAVRDAFSSVVSCFLETNAMDILFSDGTGMSGGTSR 862
Query: 239 LKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVR 298
+K +D IK AFT A+DP IL TLLESTA ++ A D+H + F +LL+ QL N VR
Sbjct: 863 VKFMDKIKSAFTEAEDPQILLTLLESTAAIVKASDIHGEVFFCSFVLLIGQLGNHDYIVR 922
Query: 299 MNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVET 358
+ A RL+++ C + KGG EL +SK + + L+DYLS RL + P+++ EFAE+ GV+T
Sbjct: 923 VTALRLLQRCCTYCFKGGLELFLSKYFHVRDNLYDYLSSRLLTHPVVISEFAESVLGVKT 982
Query: 359 EELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQAD 418
EEL+++M+P+++PKL+VS Q+NDQAV +NELA LN+++VPLIV +PKVL+FAL D
Sbjct: 983 EELIRRMVPSIIPKLIVSHQNNDQAVVTLNELASHLNSELVPLIVNSLPKVLSFALFYED 1042
Query: 419 ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKV 478
+ L S L+FY +TG+D++EIF+AALP LLDE+ICF D E + R+ ++ I+ +
Sbjct: 1043 GQHLSSVLQFYHTETGTDSKEIFSAALPTLLDEIICFPGESDQIETDRRMAKISPTIQNI 1102
Query: 479 STVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYV 538
+ +LTGN++LP FL+N FV LLNSID+KMLH+ D++LQKQAL+RI L+EM+G +L+T+
Sbjct: 1103 ARILTGNDNLPEFLKNDFVRLLNSIDKKMLHSSDVNLQKQALQRIRKLVEMMGPYLSTHA 1162
Query: 539 PKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDN 598
PKI+VLL+ AI+KE+LQ +GL VLHFFI++L+ VS +S K+V+SQV AA IP LER ++
Sbjct: 1163 PKIMVLLIFAIDKETLQMDGLDVLHFFIKRLAEVSCTSIKYVMSQVVAAFIPSLERCRER 1222
Query: 599 PSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLL 658
P V L K+V+ILE+LV+KN +LKQHI E PLLPS+ +L+ VNK IQEARG MTL+D L
Sbjct: 1223 PLVHLGKIVEILEELVVKNIILLKQHIRELPLLPSLPSLSGVNKVIQEARGLMTLQDHLK 1282
Query: 659 AAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAE 718
AV+GLNHE+LNVRYMV CEL+KL + D+T+LI GE +DLD++S+LI SLL+GCAE
Sbjct: 1283 DAVNGLNHESLNVRYMVACELNKLFNDRRGDITSLIIGEDIADLDIISSLIMSLLKGCAE 1342
Query: 719 ESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFR 778
ESRTVVGQ+LKLVCADCLGALGAVDPAK K SC+RFKIECSDDDLIFELI KHLARAFR
Sbjct: 1343 ESRTVVGQRLKLVCADCLGALGAVDPAKFKVMSCERFKIECSDDDLIFELIHKHLARAFR 1402
Query: 779 AAPDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIH 838
AA DT +QDSAALAIQELLK++GC++ +E+
Sbjct: 1403 AASDTTVQDSAALAIQELLKLSGCQSLPNESSSC-------------------------- 1436
Query: 839 EMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRK 898
+M+ RG+K W RFS YVKEIIAPCLTSRF LPS +D+ GPIY P+MSFRRWIYYWIRK
Sbjct: 1437 KMSKRGQKLWGRFSSYVKEIIAPCLTSRFHLPSVNDATLAGPIYRPTMSFRRWIYYWIRK 1496
Query: 899 LTVHATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDA 958
LT HATGSR+ IF ACRGIVRHDM TAIYLLPYLVLN VC+GT EAR I +EILSVL+A
Sbjct: 1497 LTSHATGSRSGIFGACRGIVRHDMPTAIYLLPYLVLNVVCYGTPEARQSITEEILSVLNA 1556
Query: 959 AASDHSGASVHGISG-QSEVCIQAIFTLLDNLGQWVDDVKQELALSES--LTSKQQGSKS 1015
AAS+ SGA VHGI+G QSEVCIQA+FTLLDNLGQWVDD+KQE+ALS+S + +QG K
Sbjct: 1557 AASESSGAIVHGITGGQSEVCIQAVFTLLDNLGQWVDDLKQEIALSQSNYAMAGRQGGKL 1616
Query: 1016 KHPASSMH-QDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSF 1074
+ ++SM+ QDQLL QC V+ LL+AIPKVTLA+ASFRCQA+AR+LMYFESHVREKSGS
Sbjct: 1617 RDESNSMYDQDQLLVQCSNVAELLAAIPKVTLAKASFRCQAHARALMYFESHVREKSGSS 1676
Query: 1075 NPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVF 1134
NPAA+ SG F D+D+SFLMEIY LDEPDGL GLA L KS +LQD+L+ N+K+GNWAEV
Sbjct: 1677 NPAADCSGAFSDDDISFLMEIYGGLDEPDGLLGLANLRKSSTLQDQLIINEKAGNWAEVL 1736
Query: 1135 TSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAW 1194
T CEQ+LQMEP SV RH DVLNCLLNMCHLQAM+ HVDGL+ RIPQ KKTWCMQGVQAAW
Sbjct: 1737 TLCEQSLQMEPDSVHRHCDVLNCLLNMCHLQAMIAHVDGLVYRIPQSKKTWCMQGVQAAW 1796
Query: 1195 RLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQV 1254
RLGRWDLMDEYL+ AD+ GL+C SSE+NASFDM +AKI AMMKKD F V++KI SKQ
Sbjct: 1797 RLGRWDLMDEYLAEADK-GLVCRSSENNASFDMGLAKIFNAMMKKDQFMVAEKIAQSKQA 1855
Query: 1255 LIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANW 1314
L+ PLAAAGMDSY RAYP+IVKLH+L+ELEDF+++L ++SFLEK F D KF KL +W
Sbjct: 1856 LLVPLAAAGMDSYMRAYPYIVKLHMLRELEDFNSLLGDESFLEKPFAADDPKFLKLTKDW 1915
Query: 1315 ENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILE 1374
ENRL+ TQPSLWAREPLLAFRRMV+ S + A+ GNCWLQYA+LCRLAGHYETA RAILE
Sbjct: 1916 ENRLRCTQPSLWAREPLLAFRRMVYNLSHMNAQAGNCWLQYARLCRLAGHYETAHRAILE 1975
Query: 1375 AQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNP 1434
A ASGAPN HMEKAK LW+ R+SD AIAELQQ LLN P +V+G T +SS++SLSL P
Sbjct: 1976 ADASGAPNAHMEKAKYLWNIRKSDSAIAELQQTLLNMPADVLGPTVLSSLSSLSLA--LP 2033
Query: 1435 LPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMA 1494
LS TQ E D++KTLLLY+RWIHYTGQKQ D+ +LYSRV +L+P WEKG+F +A
Sbjct: 2034 NAPLSVTQASKENPDVSKTLLLYTRWIHYTGQKQSNDIKSLYSRVADLRPKWEKGFFCIA 2093
Query: 1495 KYCDDVLVDARKRQEEN---SEIGP-------------SEKRWWFYVPDVLLFYAKGLHR 1538
K+ DD+LVDAR+RQE+ S +GP EK WW +P VL+ YA+GLHR
Sbjct: 2094 KFYDDLLVDARRRQEDKKIASGVGPVPPSSTGSLTTATEEKPWWDMLPVVLIQYARGLHR 2153
Query: 1539 GHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTV 1598
GHKNLFQALPRLLTLWF+FGSI + GSS NK +K V+ +++ IMRGCLKDLP YQWLTV
Sbjct: 2154 GHKNLFQALPRLLTLWFEFGSIYIQDGSSFNKPMKEVHIRLLGIMRGCLKDLPPYQWLTV 2213
Query: 1599 LPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAA 1658
L QL+SRICHQN E+V+LVK I+TS+LR+YPQQ LW+MAAVSKST+ +RR+AAAEI+Q+A
Sbjct: 2214 LSQLISRICHQNIEVVKLVKCIVTSILREYPQQALWMMAAVSKSTVAARRDAAAEILQSA 2273
Query: 1659 KKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPI 1718
KKGS G+ +N LF QF SLIDHLIKLCFH GQ K+R INISTEFS+LKRMMPLGII+PI
Sbjct: 2274 KKGSRRGSDSNALFMQFPSLIDHLIKLCFHPGQPKARAINISTEFSSLKRMMPLGIILPI 2333
Query: 1719 QQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIK 1778
QQ+LTVTLP D N+T+ + FS S+ PTI+GIAD+AEIL+SLQ+PKK+V +GSDGI
Sbjct: 2334 QQALTVTLPSYDTNMTDQSTFRPFSVSEHPTIAGIADDAEILNSLQKPKKVVFIGSDGIS 2393
Query: 1779 RPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVP 1838
RPFLCKPKDDLRKDSRMMEF AMINRLLSK PESRRRKLYIRTFAV+PLTEDCGMVEWVP
Sbjct: 2394 RPFLCKPKDDLRKDSRMMEFNAMINRLLSKVPESRRRKLYIRTFAVVPLTEDCGMVEWVP 2453
Query: 1839 HTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKW 1898
+TRGLR ILQDIYI+CGKFDR KTNPQIK+IYDQ QGK+PE EMLK KILPMFPPVFHKW
Sbjct: 2454 NTRGLRQILQDIYITCGKFDRMKTNPQIKKIYDQLQGKMPE-EMLKAKILPMFPPVFHKW 2512
Query: 1899 FLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF 1958
FLTTFSEPAAW RAR AYAHTTAVWSMVGHIVGLGDRHGENIL DSTTGDC+HVDFSCLF
Sbjct: 2513 FLTTFSEPAAWIRARAAYAHTTAVWSMVGHIVGLGDRHGENILLDSTTGDCIHVDFSCLF 2572
Query: 1959 DKGLLLEKPELVPFRLTQ 1976
DKGLLLEKPE+VPFR TQ
Sbjct: 2573 DKGLLLEKPEVVPFRFTQ 2590
|
Probable serine/threonine kinase. Seems to play a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|A2YH41|ATR_ORYSI Serine/threonine-protein kinase ATR OS=Oryza sativa subsp. indica GN=OsI_023634 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 2568 bits (6657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1280/1998 (64%), Positives = 1574/1998 (78%), Gaps = 58/1998 (2%)
Query: 2 TESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRV 61
E D ++L+LA++ E E++ EA++SLP+IV++SG +L +F++LE++G C+K+ +
Sbjct: 628 AECDLQVLELAIQSETGELQNEALMSLPIIVLYSGPRMLGAMFRKLETIGTLGCKKLWKS 687
Query: 62 FPISFGFLSCLSGTCSSIVDWDKNACKLLL--NVEDDILSQTVDYLLENFWCSKCDTNVV 119
IS GFLSCL+GT + D N CKL L + E IL+ LL FWC +CD V
Sbjct: 688 IAISLGFLSCLNGT-TDCTDKVGNHCKLFLAKHCEQPILTLN---LLRGFWCPQCDVRTV 743
Query: 120 HNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHG 179
H ++ IV+ + + K+++F + +++F+FLY E+SEE +S V V+ RIL H
Sbjct: 744 HIED-QVPIVDIALSEDKNIDFKINMFKAHSLFFKFLYAETSEECIVSIVEVLPRILKHS 802
Query: 180 TRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENA-SSRSNE 238
+RDVLL + +W++C++FLLL++ KA+RDAF + + FL+ + LF D S ++
Sbjct: 803 SRDVLLDMKFQWVQCVDFLLLHEMKAVRDAFSSVVSCFLETNAMDILFSDGTGMSGGTSR 862
Query: 239 LKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVR 298
+K +D IK AFT A+DP IL TLLESTA ++ A D+H + F +LL+ QL N VR
Sbjct: 863 VKFMDKIKSAFTEAEDPQILLTLLESTAAIVKASDIHGEVFFCSFVLLIGQLGNHDYIVR 922
Query: 299 MNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVET 358
+ A RL+++ C + KGG EL +SK + + L+DYLS RL + P+++ EFAE+ GV+T
Sbjct: 923 VTALRLLQRCCTYCFKGGLELFLSKYFHVRDNLYDYLSSRLLTHPVVISEFAESVLGVKT 982
Query: 359 EELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQAD 418
EEL+++M+P+++PKL+VS Q+NDQAV +NELA LN+++VPLIV +PKVL+FAL D
Sbjct: 983 EELIRRMVPSIIPKLIVSHQNNDQAVVTLNELASHLNSELVPLIVNSLPKVLSFALFYED 1042
Query: 419 ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKV 478
+ L S L+FY +TG+D++EIF+AALP LLDE+ICF D E + R+ ++ I+ +
Sbjct: 1043 GQHLSSVLQFYHTETGTDSKEIFSAALPTLLDEIICFPGESDQIETDRRMAKISPTIQNI 1102
Query: 479 STVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYV 538
+ +L GN++LP FL+N FV LLNSID+KMLH+ D++LQKQAL+RI L+EM+G +L+T+
Sbjct: 1103 ARILIGNDNLPEFLKNDFVRLLNSIDKKMLHSSDVNLQKQALQRIRKLVEMMGPYLSTHA 1162
Query: 539 PKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDN 598
PKI+VLL+ AI+KE+LQ +GL VLHFFI++L+ VS +S K+V+SQV AA IP LER ++
Sbjct: 1163 PKIMVLLIFAIDKETLQMDGLDVLHFFIKRLAEVSCTSIKYVMSQVVAAFIPSLERCRER 1222
Query: 599 PSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLL 658
P V L K+V+ILE+LV+KN +LKQHI E PLLPS+ +L+ VNK IQEARG MTL+D L
Sbjct: 1223 PLVHLGKIVEILEELVVKNIILLKQHIRELPLLPSLPSLSGVNKVIQEARGLMTLQDHLK 1282
Query: 659 AAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAE 718
AV+GLNHE+LNVRYMV CEL+KL + ED+T+LI GE +DLD++S+LI SLL+GCAE
Sbjct: 1283 DAVNGLNHESLNVRYMVACELNKLFNDRREDITSLIIGEDIADLDIISSLIMSLLKGCAE 1342
Query: 719 ESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFR 778
ESRTVVGQ+LKLVCADCLGALGAVDPAK K SC+RFKIECSDDDLIFELI KHLARAFR
Sbjct: 1343 ESRTVVGQRLKLVCADCLGALGAVDPAKFKVMSCERFKIECSDDDLIFELIHKHLARAFR 1402
Query: 779 AAPDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIH 838
AA DT +QDSAALAIQELLK++GC++ +E+
Sbjct: 1403 AASDTTVQDSAALAIQELLKLSGCQSLPNESSSC-------------------------- 1436
Query: 839 EMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRK 898
+M+ RG+K W RFS YVKEIIAPCLTSRF LPS +D+ GPIY P+MSFRRWIYYWIRK
Sbjct: 1437 KMSKRGQKLWGRFSSYVKEIIAPCLTSRFHLPSVNDATLAGPIYRPTMSFRRWIYYWIRK 1496
Query: 899 LTVHATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDA 958
LT HATGSR+ IF ACRGIVRHDM TAIYLLPYLVLN VC+GT EAR I +EILSVL+A
Sbjct: 1497 LTSHATGSRSGIFGACRGIVRHDMPTAIYLLPYLVLNVVCYGTPEARQSITEEILSVLNA 1556
Query: 959 AASDHSGASVHGISG-QSEVCIQAIFTLLDNLGQWVDDVKQELALSES--LTSKQQGSKS 1015
AAS+ SGA VHGI+G QSEVCIQA+FTLLDNLGQWVDD+KQE+ALS+S + +QG K
Sbjct: 1557 AASESSGAIVHGITGGQSEVCIQAVFTLLDNLGQWVDDLKQEIALSQSNYAMAGRQGGKL 1616
Query: 1016 KHPASSMH-QDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSF 1074
+ ++SM+ QDQLL QC V+ LL+AIPKVTLA+ASFRCQA+AR+LMYFESHVREKSGS
Sbjct: 1617 RDESNSMYDQDQLLVQCSNVAELLAAIPKVTLAKASFRCQAHARALMYFESHVREKSGSS 1676
Query: 1075 NPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVF 1134
NPAA+ SG F D+D+SFLMEIY LDEPDGL GLA L KS +LQD+L+ N+K+GNWAEV
Sbjct: 1677 NPAADCSGAFSDDDISFLMEIYGGLDEPDGLLGLANLRKSSTLQDQLIINEKAGNWAEVL 1736
Query: 1135 TSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAW 1194
T CEQ+LQMEP SV RH DVLNCLLNMCHLQAM+ HVDGL+ RIPQ KKTWCMQGVQAAW
Sbjct: 1737 TLCEQSLQMEPDSVHRHCDVLNCLLNMCHLQAMIAHVDGLVYRIPQSKKTWCMQGVQAAW 1796
Query: 1195 RLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQV 1254
RLGRWDLMDEYL+ AD+ GL+C SSE+NASFDM +AKI AMMKKD F V++KI SKQ
Sbjct: 1797 RLGRWDLMDEYLAEADK-GLVCRSSENNASFDMGLAKIFNAMMKKDQFMVAEKIAQSKQA 1855
Query: 1255 LIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANW 1314
L+ PLAAAGMDSY RAYP+IVKLH+L+ELEDF+++L ++SFLEK F D KF KL +W
Sbjct: 1856 LLVPLAAAGMDSYMRAYPYIVKLHMLRELEDFNSLLGDESFLEKPFAADDPKFLKLTKDW 1915
Query: 1315 ENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILE 1374
ENRL+ TQPSLWAREPLLAFRRMV+ S + A+ GNCWLQYA+LCRLAGHYETA RAILE
Sbjct: 1916 ENRLRCTQPSLWAREPLLAFRRMVYNLSHMNAQAGNCWLQYARLCRLAGHYETAHRAILE 1975
Query: 1375 AQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNP 1434
A ASGAPN HMEKAK LW+ R+SD AIAELQQ LLN P +V+G T +SS++SLSL P
Sbjct: 1976 ADASGAPNAHMEKAKYLWNIRKSDSAIAELQQTLLNMPADVLGPTVLSSLSSLSLA--LP 2033
Query: 1435 LPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMA 1494
LS TQ E D++KTLLLY+RWIHYTGQKQ D+ +LYSRV +L+P WEKG+F +A
Sbjct: 2034 NAPLSVTQASKENPDVSKTLLLYTRWIHYTGQKQSNDIKSLYSRVADLRPKWEKGFFCIA 2093
Query: 1495 KYCDDVLVDARKRQEEN---SEIGP-------------SEKRWWFYVPDVLLFYAKGLHR 1538
K+ DD+LVDAR+RQE+ S +GP EK WW +P VL+ YA+GLHR
Sbjct: 2094 KFYDDLLVDARRRQEDKKIASGVGPVPPSSTGSLTTATEEKPWWDMLPVVLIQYARGLHR 2153
Query: 1539 GHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTV 1598
GHKNLFQALPRLLTLWF+FGSI + GSS NK +K V+ +++ IMRGCLKDLP YQWLTV
Sbjct: 2154 GHKNLFQALPRLLTLWFEFGSIYIQDGSSFNKPMKEVHIRLLGIMRGCLKDLPPYQWLTV 2213
Query: 1599 LPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAA 1658
L QL+SRICHQN E+V+LVK I+TS+LR+YPQQ LW+MAAVSKST+ +RR+AAAEI+Q+A
Sbjct: 2214 LSQLISRICHQNIEVVKLVKCIVTSILREYPQQALWMMAAVSKSTVAARRDAAAEILQSA 2273
Query: 1659 KKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPI 1718
KKGS G+ +N LF QF SLIDHLIKLCFH GQ K+R INISTEFS+LKRMMPLGII+PI
Sbjct: 2274 KKGSRRGSDSNALFMQFPSLIDHLIKLCFHPGQPKARAINISTEFSSLKRMMPLGIILPI 2333
Query: 1719 QQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIK 1778
QQ+LTVTLP D N+T+ + FS S+ PTI+GIAD+AEIL+SLQ+PKK+V +GSDGI
Sbjct: 2334 QQALTVTLPSYDTNMTDQSTFRPFSVSEHPTIAGIADDAEILNSLQKPKKVVFIGSDGIS 2393
Query: 1779 RPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVP 1838
RPFLCKPKDDLRKDSRMMEF AMINRLLSK PESRRRKLYIRTFAV+PLTEDCGMVEWVP
Sbjct: 2394 RPFLCKPKDDLRKDSRMMEFNAMINRLLSKVPESRRRKLYIRTFAVVPLTEDCGMVEWVP 2453
Query: 1839 HTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKW 1898
+TRGLR ILQDIYI+CGKFDR KTNPQIK+IYDQ QGK+PE EMLK KILPMFPPVFHKW
Sbjct: 2454 NTRGLRQILQDIYITCGKFDRMKTNPQIKKIYDQLQGKMPE-EMLKAKILPMFPPVFHKW 2512
Query: 1899 FLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF 1958
FLTTFSEPAAW RAR AYAHTTAVWSMVGHIVGLGDRHGENIL DSTTGDC+HVDFSCLF
Sbjct: 2513 FLTTFSEPAAWIRARAAYAHTTAVWSMVGHIVGLGDRHGENILLDSTTGDCIHVDFSCLF 2572
Query: 1959 DKGLLLEKPELVPFRLTQ 1976
DKGLLLEKPE+VPFR TQ
Sbjct: 2573 DKGLLLEKPEVVPFRFTQ 2590
|
Probable serine/threonine kinase. Seems to play a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9DE14|ATR_XENLA Serine/threonine-protein kinase atr OS=Xenopus laevis GN=atr PE=1 SV=2 | Back alignment and function description |
|---|
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/1540 (32%), Positives = 793/1540 (51%), Gaps = 193/1540 (12%)
Query: 486 EDLPGFLRNHFVGLLNSIDRKMLHAE-DLSLQKQALKRIEILIEMIG-SHLTTYVPKILV 543
E + +L+ +G+L + +L + + +K AL + L++++G H+++ K++
Sbjct: 1132 EIMADYLQPKLLGILAFFNMHLLSSSIGIEDKKMALNSLVSLMKLMGPKHISSVRVKMMT 1191
Query: 544 LLMHAIN-KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVL 602
L + KE S F+ L + + ++S V AL+P L +
Sbjct: 1192 TLRTGLRYKEEFPGLCCSAWDLFVRCLDQ---AYLGPLLSHVIVALLPLLH-------IQ 1241
Query: 603 LNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMT----LKDQLL 658
+ V + L+++NR ++ +HE LP L E+ K +QE R T L+ +
Sbjct: 1242 PKETVAVFRYLIVENRDAVQDFLHEIYFLPDHPELKEIQKVLQEYRKETTKSTDLQTAMQ 1301
Query: 659 AAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAE 718
++ + HEN++VR + L + L K++ + ++ + V+S L++ LL GC +
Sbjct: 1302 LSIRAIQHENVDVRMHALTSLKETL-YKNQAKLLQYSTDSETVEPVISQLVTVLLIGCQD 1360
Query: 719 ESRTVVGQKLKLVCADCLGALGAVDPAKV---------KGFSCQRFKIECSDDDLIFELI 769
+ +L C +CLG LGA+DP ++ KGF+ F D D +EL+
Sbjct: 1361 -----ANPQARLFCGECLGQLGAIDPGRLDFSPSETQGKGFT---FVSGVEDSDFAYELL 1412
Query: 770 DKHLARAFRAAPDTI-IQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVA 828
+ RAF A D + QDSAA AIQELL I C KE T
Sbjct: 1413 TEQ-TRAFLAYADNVRAQDSAAYAIQELLSIFEC------------------KEGRT--- 1450
Query: 829 SGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVS----TGPIYLP 884
+ GR+ W RF +V+EI+ P L +R++ S +V+ PIYL
Sbjct: 1451 ------------DCPGRRLWRRFPEHVQEILEPHLNTRYK--SSRKAVNWSRVKKPIYLS 1496
Query: 885 SM--SFRRWIYYWIRKLTVHATGSRAS-IFNACRGIVRHDMQTAIYLLPYLVLNAVCHGT 941
+ +F W W L A +F+ C +++HD + IYLLP++++ +
Sbjct: 1497 KLGNNFADWSATWAGYLITKVRHELARRVFSCCSIMMKHDFKVTIYLLPHILVYVLLGCN 1556
Query: 942 EEARLGIAQEILSVLDAAASDHSGASVHGI----SGQSEVCIQAIFTLLDNLGQWVDDVK 997
+E + + EI++VL H + + S S++ Q +F++LD+L QW +
Sbjct: 1557 KEDQQEVYAEIMAVLK-----HEDPLMRRLQDSASDLSQLSTQTVFSMLDHLTQWAREKF 1611
Query: 998 QELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYA 1057
Q AL+ T+ + G++ + A S ++ + Q V+ L IP+ TLA ASFR +AY
Sbjct: 1612 Q--ALNAEKTNPKPGTRGEPKAVS---NEDYGEYQNVTRFLDLIPQDTLAVASFRSKAYT 1666
Query: 1058 RSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS-LS 1116
R+LM+FES + EK E + FL ++Y+ + EPDG++G++ + K S
Sbjct: 1667 RALMHFESFIMEKKQEIQ-----------EHLGFLQKLYAAMHEPDGVAGVSAIRKKEAS 1715
Query: 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLIS 1176
L++++L ++ G + ++A+Q++P + + V+ +L + L ++T V+G+++
Sbjct: 1716 LKEQILEHESIGLLRDATACYDRAIQLKPEEIIHYHGVVKSMLGLGQLSTVITQVNGILN 1775
Query: 1177 RIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAM 1236
++ V+AAW+L +WDL++EYLS + + ++ + + ++L +
Sbjct: 1776 SRSEWTAELNTYRVEAAWKLSQWDLVEEYLS----------ADRKSTTWSIRLGQLLLSA 1825
Query: 1237 MKKDHFSVSDKIGVSKQVLIAPLAAAGMD--SYTRAYPFIVKLHLLQELEDFHAILVNDS 1294
K + + + V + I PL+AA + SY R Y +IV+LH+L ELE H++ +
Sbjct: 1826 KKGERDMFYETLKVVRAEQIVPLSAASFERGSYQRGYEYIVRLHMLCELE--HSVKM--- 1880
Query: 1295 FLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRR---MVFGASGLGAEVGNC 1351
FL+K + + L A RL+ TQ S AREP+LA RR + +G C
Sbjct: 1881 FLQKPSVEPAVDSLNLPA----RLEMTQNSYRAREPILAVRRALQTINKRPNHADMIGEC 1936
Query: 1352 WLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNK 1411
WLQ A++ R AGH++TA A+L A S +++E+AK LWS A+ LQ K
Sbjct: 1937 WLQSARVARKAGHHQTAYNALLNAGESRLSELNVERAKWLWSKGDVHQALIVLQ-----K 1991
Query: 1412 PVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDI-AKTLLLYSRWIHYTGQKQKE 1470
E+ LS+T E++ I + +LL R + T +
Sbjct: 1992 GAELF---------------------LSSTSAPPEQQLIHGRAMLLVGRLMEETANFESN 2030
Query: 1471 DVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQEENSEIGPSEKRWWFYVPDV 1528
V+ Y V L P WE G+FY+AKY D ++ V K +++ I R+ +
Sbjct: 2031 AVMKKYKDVTALLPEWEDGHFYLAKYYDKLMPMVTDNKMEKQGDLI-----RY------I 2079
Query: 1529 LLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGSSSNKDLKNVNGKVMSIMRG 1585
+L + + L G++ ++Q++PR+L+LW DFG+ ++AG + +KN K+ ++
Sbjct: 2080 VLHFGRSLQFGNQYIYQSMPRMLSLWLDFGAKVYEWEKAGRADRLQMKNELMKINKVISD 2139
Query: 1586 CLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIP 1645
L YQ+LT QL+SRICH ++E+ ++ I+ V YPQQ +W+M AVSKS+ P
Sbjct: 2140 HKNQLAPYQFLTAFSQLISRICHSHDEVFAVLMEIVAKVFVAYPQQAMWMMTAVSKSSYP 2199
Query: 1646 SRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSA 1705
R EI++ A S G T L D L++LC + T++++ F
Sbjct: 2200 MRVNRCKEILEKAIHMKP---SLGKFIGDATRLTDKLLELCNKPVDGNTSTLSMNIHFKM 2256
Query: 1706 LKRMMPLG----IIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILS 1761
LK+++ I++P+Q + TLP A + D F +SG D EIL
Sbjct: 2257 LKKLVEETTFSEILIPLQSVMIPTLP-STAGKRDHADHDPFPGH-WAYLSGFDDAVEILP 2314
Query: 1762 SLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821
SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++IN+ L K ESRRR+L+IRT
Sbjct: 2315 SLQKPKKISLKGSDGKSYIMMCKPKDDLRKDCRLMEFNSLINKCLRKDAESRRRELHIRT 2374
Query: 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIY-----ISCGKFDRQKTNPQIKRIYDQFQGK 1876
+AVIPL ++CG++EWV +T G RNIL +Y GK RQ P+ + ++ +
Sbjct: 2375 YAVIPLNDECGIIEWVNNTAGFRNILIKLYKEKGIYMGGKELRQCMLPKSAPLQEKLK-- 2432
Query: 1877 IPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRH 1936
+ K +LP PP+FH+WFL TF +P +W+ +R AY +TAV SMVG+I+GLGDRH
Sbjct: 2433 -----VFKEALLPRHPPLFHEWFLRTFPDPTSWYNSRSAYCRSTAVMSMVGYILGLGDRH 2487
Query: 1937 GENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQ 1976
GENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT
Sbjct: 2488 GENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLTH 2527
|
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates BRCA1, CHEK1, MCM2, RAD17, RPA2, SMC1 and p53/TP53, which collectively inhibit DNA replication and mitosis and promote DNA repair, recombination and apoptosis. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at sites of DNA damage, thereby regulating DNA damage response mechanism. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q13535|ATR_HUMAN Serine/threonine-protein kinase ATR OS=Homo sapiens GN=ATR PE=1 SV=3 | Back alignment and function description |
|---|
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/1529 (31%), Positives = 774/1529 (50%), Gaps = 166/1529 (10%)
Query: 486 EDLPGFLRNHFVGLLNSIDRKMLHAE-DLSLQKQALKRIEILIEMIG-SHLTTYVPKILV 543
E + +L+ +G+L + ++L + + +K AL + L++++G H+++ K++
Sbjct: 1117 ELMADYLQPKLLGILAFFNMQLLSSSVGIEDKKMALNSLMSLMKLMGPKHVSSVRVKMMT 1176
Query: 544 LLMHAINKE----SLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNP 599
L + + L C F+ L S ++S V AL+P +
Sbjct: 1177 TLRTGLRFKDDFPELCCRAWDC---FVRCLDHACLGS---LLSHVIVALLPLIH------ 1224
Query: 600 SVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMT----LKD 655
+ + I L+++NR ++ +HE LP L ++ +QE R + L+
Sbjct: 1225 -IQPKETAAIFHYLIIENRDAVQDFLHEIYFLPDHPELKKIKAVLQEYRKETSESTDLQT 1283
Query: 656 QLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRG 715
L ++ + HEN++VR + L + L E + + ++S L++ LL+G
Sbjct: 1284 TLQLSMKAIQHENVDVRIHALTSLKETLYKNQEKLIKYATDSETVE-PIISQLVTVLLKG 1342
Query: 716 CAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQR------FKIECSDDDLIFELI 769
C + + +L+C +CLG LGA+DP ++ + + F D + L+
Sbjct: 1343 CQD-----ANSQARLLCGECLGELGAIDPGRLDFSTTETQGKDFTFVTGVEDSSFAYGLL 1397
Query: 770 DKHLARAFRA-APDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVA 828
L RA+ A A ++ QDSAA AIQELL I C
Sbjct: 1398 -MELTRAYLAYADNSRAQDSAAYAIQELLSIYDCREM----------------------- 1433
Query: 829 SGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVS--TGPIYLPSM 886
E N G + W RF +V+EI+ P L +R++ S S PIYL +
Sbjct: 1434 ----------ETNGPGHQLWRRFPEHVREILEPHLNTRYKSSQKSTDWSGVKKPIYLSKL 1483
Query: 887 --SFRRWIYYWIRKLTVHATGSRAS-IFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEE 943
+F W W L AS IF C +++HD + IYLLP++++ + +E
Sbjct: 1484 GSNFAEWSASWAGYLITKVRHDLASKIFTCCSIMMKHDFKVTIYLLPHILVYVLLGCNQE 1543
Query: 944 ARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALS 1003
+ + EI++VL H+ + S ++ Q +F++LD+L QW Q L
Sbjct: 1544 DQQEVYAEIMAVLKHD-DQHTINTQDIASDLCQLSTQTVFSMLDHLTQWARHKFQALKAE 1602
Query: 1004 ESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYF 1063
+ SK +K S++ + Q V+ L IP+ TLA ASFR +AY R++M+F
Sbjct: 1603 KCPHSKSNRNKVDSMVSTVDYEDY----QSVTRFLDLIPQDTLAVASFRSKAYTRAVMHF 1658
Query: 1064 ESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS-LSLQDELL 1122
ES + EK + E + FL ++Y+ + EPDG++G++ + K+ SL++++L
Sbjct: 1659 ESFITEKKQNIQ-----------EHLGFLQKLYAAMHEPDGVAGVSAIRKAEPSLKEQIL 1707
Query: 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK 1182
++ G + ++A+Q+EP + + V+ +L + L ++T V+G+ + ++
Sbjct: 1708 EHESLGLLRDATACYDRAIQLEPDQIIHYHGVVKSMLGLGQLSTVITQVNGVHANRSEWT 1767
Query: 1183 KTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHF 1242
V+AAW+L +WDL++ YL+ + + ++ + + ++L + K+D
Sbjct: 1768 DELNTYRVEAAWKLSQWDLVENYLAADGK----------STTWSVRLGQLLLSAKKRDIT 1817
Query: 1243 SVSDKIGVSKQVLIAPLAAAGMD--SYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSF 1300
+ D + + + I PL+AA + SY R Y +IV+LH+L ELE H+I + S
Sbjct: 1818 AFYDSLKLVRAEQIVPLSAASFERGSYQRGYEYIVRLHMLCELE--HSI---KPLFQHS- 1871
Query: 1301 LPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGAS---GLGAEVGNCWLQYAK 1357
P D + NW RL+ TQ S A+EP+LA RR + + VG CWLQ A+
Sbjct: 1872 -PGDSSQEDSL-NWVARLEMTQNSYRAKEPILALRRALLSLNKRPDYNEMVGECWLQSAR 1929
Query: 1358 LCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVG 1417
+ R AGH++TA A+L A S +++E+AK LWS A+ LQ K VE+
Sbjct: 1930 VARKAGHHQTAYNALLNAGESRLAELYVERAKWLWSKGDVHQALIVLQ-----KGVELC- 1983
Query: 1418 STAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYS 1477
P N P ++ + +LL R++ T + ++ Y
Sbjct: 1984 ------------FPENETPPEGKNMLIH-----GRAMLLVGRFMEETANFESNAIMKKYK 2026
Query: 1478 RVRELQPMWEKGYFYMAKYCDDVL--VDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKG 1535
V P WE G+FY+AKY D ++ V K +++ I R+ ++L + +
Sbjct: 2027 DVTACLPEWEDGHFYLAKYYDKLMPMVTDNKMEKQGDLI-----RY------IVLHFGRS 2075
Query: 1536 LHRGHKNLFQALPRLLTLWFDFGSIC---QRAGSSSNKDLKNVNGKVMSIMRGCLKDLPA 1592
L G++ ++Q++PR+LTLW D+G+ ++AG S ++N GK+ ++ L
Sbjct: 2076 LQYGNQFIYQSMPRMLTLWLDYGTKAYEWEKAGRSDRVQMRNDLGKINKVITEHTNYLAP 2135
Query: 1593 YQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAA 1652
YQ+LT QL+SRICH ++E+ ++ II V YPQQ +W+M AVSKS+ P R
Sbjct: 2136 YQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFLAYPQQAMWMMTAVSKSSYPMRVNRCK 2195
Query: 1653 EIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPL 1712
EI+ K S G T L D L++LC S T+++ST F LK+++
Sbjct: 2196 EILN---KAIHMKKSLEKFVGDATRLTDKLLELCNKPVDGSSSTLSMSTHFKMLKKLVEE 2252
Query: 1713 G----IIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKK 1768
I++P+Q + TLP S + F I+G D EIL+SLQ+PKK
Sbjct: 2253 ATFSEILIPLQSVMIPTLPSILGTHANHASHEPFPGH-WAYIAGFDDMVEILASLQKPKK 2311
Query: 1769 IVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLT 1828
I L GSDG +CKPKDDLRKD R+MEF ++IN+ L K ESRRR+L+IRT+AVIPL
Sbjct: 2312 ISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSLINKCLRKDAESRRRELHIRTYAVIPLN 2371
Query: 1829 EDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPED-EMLKTKI 1887
++CG++EWV +T GLR IL +Y G + T ++++ + E ++ + +
Sbjct: 2372 DECGIIEWVNNTAGLRPILTKLYKEKGVY---MTGKELRQCMLPKSAALSEKLKVFREFL 2428
Query: 1888 LPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTG 1947
LP PP+FH+WFL TF +P +W+ +R AY +TAV SMVG+I+GLGDRHGENILFDS TG
Sbjct: 2429 LPRHPPIFHEWFLRTFPDPTSWYSSRSAYCRSTAVMSMVGYILGLGDRHGENILFDSLTG 2488
Query: 1948 DCVHVDFSCLFDKGLLLEKPELVPFRLTQ 1976
+CVHVDF+CLF+KG E PE+VPFRLT
Sbjct: 2489 ECVHVDFNCLFNKGETFEVPEIVPFRLTH 2517
|
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates BRCA1, CHEK1, MCM2, RAD17, RPA2, SMC1 and p53/TP53, which collectively inhibit DNA replication and mitosis and promote DNA repair, recombination and apoptosis. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at sites of DNA damage, thereby regulating DNA damage response mechanism. Required for FANCD2 ubiquitination. Critical for maintenance of fragile site stability and efficient regulation of centrosome duplication. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9JKK8|ATR_MOUSE Serine/threonine-protein kinase ATR OS=Mus musculus GN=Atr PE=1 SV=2 | Back alignment and function description |
|---|
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/1435 (32%), Positives = 738/1435 (51%), Gaps = 175/1435 (12%)
Query: 580 VISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTE 639
++S V AL+P + + I L+++NR ++ +HE LP L +
Sbjct: 1211 LLSHVIVALLPLIHMQP-------KETAAIFHYLIIENRDAVQDFLHEIYFLPDHPELEK 1263
Query: 640 VNKAIQEARGPMT----LKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALIN 695
+ +QE R + L+ L ++ + HEN++VR + L + L E +
Sbjct: 1264 IKAVLQEYRKETSETTDLQTTLQLSMKAIQHENVDVRIHALTSLKETLYKNQEKLIKYAT 1323
Query: 696 GEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSC--- 752
+ V+S L++ +L+GC + + +L+C +CLG LGA+DP ++ FS
Sbjct: 1324 DSETVE-PVISQLVTVILKGCQD-----ANSQARLLCGECLGELGAIDPGRLD-FSTTET 1376
Query: 753 --QRFKIECSDDDLIFEL-IDKHLARAFRA-APDTIIQDSAALAIQELLKIAGCEASLDE 808
+ F +DL F + L RA+ A A ++ QDSAA AIQELL I C +
Sbjct: 1377 QGKDFTFVTGVEDLSFAYGLLMELTRAYLAYADNSRAQDSAAYAIQELLSIYDCR-EMQS 1435
Query: 809 NVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQ 868
N P G + W RF +V+EI+ P L +R++
Sbjct: 1436 NGP--------------------------------GYQLWKRFPEHVREILEPHLNTRYK 1463
Query: 869 LPSGSDSVS--TGPIYLPSM--SFRRWIYYWIRKLTVHATGSRAS-IFNACRGIVRHDMQ 923
S S T PIYL + +F W W L + AS IF C +++HD +
Sbjct: 1464 SSQKSTDWSGVTKPIYLSKLGNNFAEWSSSWAGYLITKVRDNLASKIFTCCSIMMKHDFK 1523
Query: 924 TAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIF 983
IYLLP++++ + +E + + EI++VL H+ ++ S ++ Q +F
Sbjct: 1524 VTIYLLPHILVYVLLGCNQEDQQEVYAEIMAVLKHD-EQHAISTQDSASDLCQLSTQTVF 1582
Query: 984 TLLDNLGQWVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIPK 1043
++LD+L QW Q L + +K +G + + Q V+ L IP+
Sbjct: 1583 SVLDHLTQWARHKFQALNAEKLAQNKPKGVSNVN----------FEDYQSVTRFLDLIPQ 1632
Query: 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPD 1103
TLA ASFR +AY R++M+FES + EK + + + FL ++Y+ + EPD
Sbjct: 1633 DTLAVASFRSKAYTRAVMHFESFITEKKQNIQ-----------KHLGFLQKLYAAMHEPD 1681
Query: 1104 GLSGLARLHKS-LSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC 1162
G++G++ + K+ SL++++L ++ G + ++A+Q+EP + + V+ +L +
Sbjct: 1682 GVAGVSAIRKAEPSLKEQILEHESIGLLRDATACYDRAIQLEPDQIIHYHGVVKSMLGLG 1741
Query: 1163 HLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESN 1222
L ++T V+G+ + ++ V+AAW+L +WDL++ YL+ + +
Sbjct: 1742 QLSTVITQVNGVHANRSEWTDELNTYRVEAAWKLSQWDLVENYLAADGK----------S 1791
Query: 1223 ASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMD--SYTRAYPFIVKLHLL 1280
++ + + ++L + K+D + D + + + I PL+AA + SY R Y FIV+LH+L
Sbjct: 1792 TTWSVRLGQLLLSAKKRDTTTFYDTLKLVRAEQIVPLSAASFERGSYQRGYEFIVRLHML 1851
Query: 1281 QELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFG 1340
ELE H++ KS P D ++ NW RL+ TQ S A+EP+LA RR +
Sbjct: 1852 CELE--HSL---KPLFRKS--PGD-SCNEDSLNWGARLEMTQNSYRAKEPILALRRALLS 1903
Query: 1341 AS---GLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRS 1397
+ VG CWLQ A++ R AGH++TA A+L A S +++E+AK LWS
Sbjct: 1904 LNKRPDYNEMVGECWLQSARVARKAGHHQTAYNALLNAGESRLAELYVERAKWLWSKGDV 1963
Query: 1398 DGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLY 1457
A+ LQ K VE+ P N P S ++ + LL
Sbjct: 1964 HQALIVLQ-----KGVELC-------------FPENKSPSESKHMLIH-----GRATLLV 2000
Query: 1458 SRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQEENSEIG 1515
R++ T + V+ Y V P WE G+FY+AKY D ++ V K +++ I
Sbjct: 2001 GRFMEETANFESNAVMKKYKDVTLFLPEWEDGHFYLAKYYDKLMPMVTDNKMEKQGDLI- 2059
Query: 1516 PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGSSSNKDL 1572
R+ ++L + + L G++ ++Q++PR+L+LW DFG+ ++ G S +
Sbjct: 2060 ----RY------IVLHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYEWEKGGRSDRLQM 2109
Query: 1573 KNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQG 1632
+N K+ S++ L YQ+LT QL+SRICH ++E+ ++ II V YPQQ
Sbjct: 2110 RNDLAKINSVLTEHTNRLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFLAYPQQA 2169
Query: 1633 LWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQS 1692
+W+M AVSKS+ P R EI+ K S G T L D L++LC +
Sbjct: 2170 MWMMTAVSKSSYPMRVNRCKEIL---TKAIHMKKSLEKFVGDATRLTDKLLELCNKSVDG 2226
Query: 1693 KSRTINISTEFSALKRMMP----LGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLP 1748
+ T+++ST F LKR++ I++P+Q + TLP + L + D F
Sbjct: 2227 SNSTLSMSTHFKMLKRLVEDPTFSEILIPLQSVMIPTLP---SVLGAHANHDPFPGH-WA 2282
Query: 1749 TISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSK 1808
++G D EILSSLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++IN+ L K
Sbjct: 2283 YLAGFDDVVEILSSLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSLINKSLRK 2342
Query: 1809 YPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKR 1868
ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL IY G + T +++
Sbjct: 2343 DAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKIYKEKGVY---MTGKELR- 2398
Query: 1869 IYDQFQGKIPEDEMLKTKI-------LPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTA 1921
Q +P+ L K+ LP PPVFH+WFL TF +P +W+ +R AY +TA
Sbjct: 2399 -----QCMLPKSAALSEKLKVFQELLLPRHPPVFHEWFLRTFPDPTSWYSSRSAYCRSTA 2453
Query: 1922 VWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQ 1976
V SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT
Sbjct: 2454 VMSMVGYILGLGDRHGENILFDSFTGECVHVDFNCLFNKGETFEVPEIVPFRLTH 2508
|
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates BRCA1, CHEK1, MCM2, RAD17, RPA2, SMC1 and p53/TP53, which collectively inhibit DNA replication and mitosis and promote DNA repair, recombination and apoptosis. Phosphorylates Ser-139 of histone variant H2AX/H2AFX at sites of DNA damage, thereby regulating DNA damage response mechanism. Required for FANCD2 ubiquitination. Critical for maintenance of fragile site stability and efficient regulation of centrosome duplication (By similarity). Essential for preventing the occurrence of DNA damage during early embryogenesis. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q02099|RAD3_SCHPO Protein kinase rad3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 524 bits (1349), Expect = e-147, Method: Compositional matrix adjust.
Identities = 458/1687 (27%), Positives = 770/1687 (45%), Gaps = 175/1687 (10%)
Query: 339 LASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDM 398
+ +P + FA+ E + L++ LP LV+++ +I +A+ +D+
Sbjct: 712 MGKKPNIASLFAQLMNISEGDFLIRTQ-AYTLPFLVLTKNKA-----LIVRIAELSQSDV 765
Query: 399 VPLIVTWIPKVLAFALHQADERRLLSALEFYCIQTGSDNQEIFAAAL------PALLDEL 452
L +T + K+LA +L D L ++ SD +++ +L ++ L
Sbjct: 766 ATLCLTNMHKILA-SLLTTDHPNLEESVMLLLSLATSDFEKVDLTSLLRSDPISITVELL 824
Query: 453 ICFVDGGDSDEINERLNRVPRVIRKV--STVLTGNEDLPGFLRNHFVGLL---NSIDRKM 507
+ + ++I L +V ++ +V L+ E L F NH +G+L ++I +
Sbjct: 825 QLYQNDVPHEKIENALRKVAMIVSQVVNDEDLSNKELLYDFFNNHILGILAEFSNILNDL 884
Query: 508 LHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIE 567
++ + + + IE ++ + G + +P+IL L A E L+ + I
Sbjct: 885 KGKTSINEKIKTIVGIEKMLSLCGGAVKLGLPQILSNLQSAFQNEHLRFYAIKAWFSLIL 944
Query: 568 QLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHE 627
SS + + L P+LE + V++I + + L+
Sbjct: 945 ATKEPEYSSIAGLSLVILPPLFPYLEPQE------AELVIQIFDFISSDTHKCLQGLKWA 998
Query: 628 FPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKS 687
P A + K I + +L + + L +EN V Y+ + +L + K
Sbjct: 999 IPTSLDSACFSLKAKEIFCSLQNEDFYSELQSIIKCLTNENEPVCYLGLQKLELFFQAKV 1058
Query: 688 EDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKV 747
+++ +N + ++ VL L+ LL C + + T ++ + A LG LGA+DP++
Sbjct: 1059 DELHDTLNLDISNE--VLDQLLRCLLDCCVKYAST--NMQISYLAAKNLGELGAIDPSRA 1114
Query: 748 KGFSCQRFKI-----ECSDDDL--IFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIA 800
K + + E ++ L I + + L AF DT Q A A+QE LK+
Sbjct: 1115 KAQHIIKETVVLDNFENGEESLKFILDFMQSQLIPAFLVTTDTKAQGFLAYALQEFLKLG 1174
Query: 801 GCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIA 860
G +++ V+ K+ LTVV M ++ K ++
Sbjct: 1175 GFKSA-----------VINKKKGLTVVTEHWMSLPDLS-----------------KRVLI 1206
Query: 861 PCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHATGSRA-SIFNACRGIVR 919
P LTS++ L PIY +++ W+ + KL +A A IF C +V+
Sbjct: 1207 PFLTSKYHLTPIPKIDIRYPIYKENVTIHTWMQLFSLKLMEYAHSQNAEKIFGICSKVVK 1266
Query: 920 -HDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVC 978
++ +LLP+LVLN + +E + +E V++ D ++ + Q
Sbjct: 1267 DQEVNIPCFLLPFLVLNVILTESELEVNKVIEEFQLVINQPGPD----GLNSVGQQRYTS 1322
Query: 979 -IQAIFTLLDNLGQWVD-DVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSG 1036
+ F ++D L +W+ K+ ++ K+ S A+S + V
Sbjct: 1323 FVDVFFKIVDYLNKWLRMRKKRNWDRRSAIARKENRYMSVEDATSRE-----SSISKVES 1377
Query: 1037 LLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIY 1096
LS P TL S C +AR+L Y+E H+R + + AA +S D L EIY
Sbjct: 1378 FLSRFPSKTLGIVSLNCGFHARALFYWEQHIRNATAPY--AALES------DYRVLQEIY 1429
Query: 1097 SFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLN 1156
+ +D+PD + ++ S +LL ++ SG W + E +Q +P + + +LN
Sbjct: 1430 AGIDDPDEIEAVSLNFHDYSFDQQLLLHENSGTWDSALSCYEIIIQKDPENKKAKIGLLN 1489
Query: 1157 CLLNMCHLQAMVTHVDG-LISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLL 1215
+L H +++V +D +I+ +Y K + G++A+WR D + + LS ++ E
Sbjct: 1490 SMLQSGHYESLVLSLDSFIINDNHEYSKMLNL-GIEASWRSLSIDSLKKCLSKSNLE--- 1545
Query: 1216 CSSSESNASFDMDVAKILQAMMKKDHFS-VSDKIGVSKQVLIAPLAAAGMDSYTRAYPFI 1274
SF+ + I ++KD F+ +++++ +A G S Y +
Sbjct: 1546 --------SFEAKLGSIFYQYLRKDSFAELTERLQPLYVDAATAIANTGAHSAYDCYDIL 1597
Query: 1275 VKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAF 1334
KLH + DF I D + + D+ + RL P + +L+
Sbjct: 1598 SKLH---AINDFSRIAETDGIVSDNL---DIVLRR-------RLSQVAPYGKFKHQILST 1644
Query: 1335 RRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWST 1394
+ + + +L+ A++ R G ++ A AIL+A P +E A+ W
Sbjct: 1645 HLVGYEKFENTKKTAEIYLEIARISRKNGQFQRAFNAILKAMDLDKPLATIEHAQWWWHQ 1704
Query: 1395 RRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTL 1454
+ AI+EL +L N ++V P N L N K
Sbjct: 1705 GQHRKAISELNFSLNNNMFDLVDEHEER--------PKNRKETLGNPLK-------GKVF 1749
Query: 1455 LLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEI 1514
L ++W+ GQ +D+ T Y + E+ E ++Y+ + VL+ EE ++
Sbjct: 1750 LKLTKWLGKAGQLGLKDLETYYHKAVEIYSECENTHYYLGHH--RVLM-----YEEEQKL 1802
Query: 1515 GPSEKRWWFY----VPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAG----- 1565
+E+ F V ++ + + L+ G ++++++P+LLTLW DFG+ R
Sbjct: 1803 PVNEQSERFLSGELVTRIINEFGRSLYYGTNHIYESMPKLLTLWLDFGAEELRLSKDDGE 1862
Query: 1566 --------SSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLV 1617
SS K L+ +N V R +K +P Y +L L Q++SR+CH N ++ +++
Sbjct: 1863 KYFREHIISSRKKSLELMNSNVC---RLSMK-IPQYFFLVALSQMISRVCHPNNKVYKIL 1918
Query: 1618 KHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQA--AKKGSAHGNSANNLFGQF 1675
+HII +V+ YP + LW + A KST R I+ ++K S Q
Sbjct: 1919 EHIIANVVASYPGETLWQLMATIKSTSQKRSLRGKSILNVLHSRKLSMSSKVDIKALSQS 1978
Query: 1676 TSLI-DHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLT 1734
LI + LI LC SKS +++ F L P+ +++P + L +TLP +DAN
Sbjct: 1979 AILITEKLINLCNTRINSKSVKMSLKDHFR-LSFDDPVDLVIPAKSFLDITLPAKDAN-- 2035
Query: 1735 ESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSR 1794
S F + PT+ DE +I++SLQ+P+K+ + G+DG PFLCKPKDDLRKD+R
Sbjct: 2036 -RASHYPFPKTQ-PTLLKFEDEVDIMNSLQKPRKVYVRGTDGNLYPFLCKPKDDLRKDAR 2093
Query: 1795 MMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISC 1854
+MEF +I ++L K E+ RR L IRT+ VIPL E+CG +EWV HTR R IL Y
Sbjct: 2094 LMEFNNLICKILRKDQEANRRNLCIRTYVVIPLNEECGFIEWVNHTRPFREILLKSY--- 2150
Query: 1855 GKFDRQKTNP----QIKRIYDQFQGKIPE-DEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909
RQK P +IK D F + P ++ + KILP FPPVF++WF+ +F EP W
Sbjct: 2151 ----RQKNIPISYQEIKVDLD-FALRSPNPGDIFEKKILPKFPPVFYEWFVESFPEPNNW 2205
Query: 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPEL 1969
+R Y T AV S+VG+++GLGDRHGENILFD TG+ +HVDF+CLFDKGL EKPE
Sbjct: 2206 VTSRQNYCRTLAVMSIVGYVLGLGDRHGENILFDEFTGEAIHVDFNCLFDKGLTFEKPEK 2265
Query: 1970 VPFRLTQ 1976
VPFRLT
Sbjct: 2266 VPFRLTH 2272
|
Serine/threonine kinase which activates checkpoint signaling upon genotoxic stresses. Involved in G2 arrest following DNA damage where it phosphorylates chk1. It is also involved in the dependence of mitosis on the completion of DNA replication. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q54ER4|ATR1_DICDI Probable serine/threonine-protein kinase atr1 OS=Dictyostelium discoideum GN=atr1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust.
Identities = 294/939 (31%), Positives = 456/939 (48%), Gaps = 111/939 (11%)
Query: 1094 EIYSFLDEPDGLSGLARLHK---SLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQR 1150
+IY +D+ DGL GL+ HK S S +++++ + G W + AL+ P ++
Sbjct: 2151 KIYHEMDDIDGLIGLS--HKRVGSPSNEEKIVELESQGFWGDALLYYNTALERSPINMDL 2208
Query: 1151 HSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQG---VQAAWRLGRWDLMDEYLS 1207
LNCL N+ ++++ ++GL K G +Q++WRL WD +DE LS
Sbjct: 2209 RIGALNCLFNLGQHESLLLQIEGLKQEPWLTNKDQSKLGTIKIQSSWRLSHWDKIDETLS 2268
Query: 1208 GADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSY 1267
E +F+ + +IL +++KK + + + L L + +DSY
Sbjct: 2269 QTHE-----------PNFEAYLGRILYSLVKKQEKEFNSNLFQCRSFLAQLLNGSALDSY 2317
Query: 1268 TRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLK--------------------- 1306
R YP++++ H+L+E+E + ++ + +P +
Sbjct: 2318 QRCYPYLIQAHILEEIEQSYKLI------HYNVIPIENVTITNNNNNIGNNNNSNNNNVQ 2371
Query: 1307 ----FSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLA 1362
KL++ W++RLK QPS RE +L+ RR + EV +CW++ K R
Sbjct: 2372 KQQMLKKLLSEWDDRLKIIQPSFKLRESILSVRREILEIGSFSKEVIDCWMKIGKYARHD 2431
Query: 1363 GHYETATRAILEAQASGAPNVH-MEKAKLLWSTRRSDGAIAELQQNLLNK---------- 1411
+E + AIL+ S + +E AKL+W+ S AI L Q L NK
Sbjct: 2432 KKFELSLNAILKPTPSQQDKFYFIEHAKLMWNQGHSFEAINILTQELKNKWNPIINSNNN 2491
Query: 1412 ---PVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQ 1468
+ S SL +P L + I+KT LL +RW G
Sbjct: 2492 SSNNSSSNININNGSKLSLLGLPQEDLFI------------ISKTHLLIARWKQQCGITH 2539
Query: 1469 KEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGP--SEKRWWFYVP 1526
++ YS + WEKG+F++ +Y D +L + KR +NS P + Y
Sbjct: 2540 HSELTEHYSSATAFE--WEKGFFFLGRYYDSLLSNL-KRVNQNSPNSPPLDSVSYVDYTR 2596
Query: 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGC 1586
+++ Y + + GH ++Q L R++ LW + G I K K + + SI +
Sbjct: 2597 NIISSYGQAVILGHSYIYQTLTRIIALWCELGVIFSDFKIPE-KSTKVTSDSLESIKKAM 2655
Query: 1587 LK---DLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKST 1643
K D+PA WL L Q+ SRICH+N + +++ II + ++P+Q +WIM +S+
Sbjct: 2656 SKLELDVPASNWLMFLSQVASRICHKNTDTWLILEKIIIRTMIEFPKQSIWIMMMQYRSS 2715
Query: 1644 IPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSR-TINISTE 1702
R++ A ++ A+K A + + + L L+ + H ++ R +I +S
Sbjct: 2716 SSIRKQRARTCLEKARKTDAIKKNQD----ETILLCAQLLAVSNHPKKANKRYSIKMSEI 2771
Query: 1703 FSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSS 1762
F L M L +I+P+Q SL V+LPP P + LP I D+ +I+ S
Sbjct: 2772 FKKLYEMKDLTVILPLQSSLNVSLPPNGK-----PDKSYPAFGSLPLIGSFEDQIDIMPS 2826
Query: 1763 LQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTF 1822
LQ PKKI + G + FL KP DDLRKD R+MEF M+N+L+ K P R+R L IRT+
Sbjct: 2827 LQGPKKINVNDRQGNRYSFLLKPNDDLRKDQRVMEFNTMVNKLIKKDPACRKRNLKIRTY 2886
Query: 1823 AVIPLTEDCGMVEWVPHTRGLRNILQDIY-----ISCGKFDRQKTNPQIKRIYDQFQGKI 1877
VIP E+ G++EWV +T LR+IL IY I +F++ + K D F+
Sbjct: 2887 TVIPFNEESGIIEWVSNTATLRSILGGIYETMDTIGIDRFNQMVNAKKEKHYLDLFED-- 2944
Query: 1878 PEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHG 1937
FPPV HK F+T F EP+AW AR A+A + A+ SMVG ++GLGDRH
Sbjct: 2945 ---------FNRFFPPVLHKHFITNFPEPSAWLDARDAFARSCAIMSMVGSVLGLGDRHT 2995
Query: 1938 ENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQ 1976
ENIL DS TG+CVH+D++CLF KG PE VPFRLT+
Sbjct: 2996 ENILLDSITGECVHIDYNCLFWKGETFTVPERVPFRLTR 3034
|
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9VXG8|ATR_DROME Serine/threonine-protein kinase ATR OS=Drosophila melanogaster GN=mei-41 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 420/1620 (25%), Positives = 721/1620 (44%), Gaps = 262/1620 (16%)
Query: 483 TGNEDLPGFLRNHFVGLLNSIDRKMLHAE-DLSLQKQALKRIEILIEMIGS-HLTTYVPK 540
T N + F+ F+G++ + + + L+++ L + ++ +GS H+T + K
Sbjct: 950 TANAEFANFIAERFLGVITYFESCLSEPSFEKPLKEETLYSLGQIMRFVGSQHVTQFRFK 1009
Query: 541 ILVLL--MHAINKESLQCEGLSVLHFFIE--QLSRVSPSSTKHVISQVFAALIPFLERDK 596
I+ +L +H + + LQ L + H F+ + + PS + ++ A L P L
Sbjct: 1010 IIAMLSFVHTLQEPRLQRICLKIWHIFLHVVNVQELGPS-----LGRIVATLQPLL---A 1061
Query: 597 DNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALT-EVNKAIQEARGPMTLK- 654
DN SV +V + E ++L+N ++L I + L + ++ + K I+ + LK
Sbjct: 1062 DNESV--KQVNDLYEFIILRNASMLGTFITDLYFLDRMENVSPSIQKCIRRHTAHLDLKG 1119
Query: 655 ------------DQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDL 702
DQL + E L VR + L L + + + I E +
Sbjct: 1120 LAEEENQSPPLVDQLRFLQKHITDECLQVRVYALQHLGDLFGRRRPKLNSTILSELPLE- 1178
Query: 703 DVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVD----PAKVKGFSCQRFKIE 758
+L +++ L+ GC + +L++ A CLG LGA+D P+ S Q +
Sbjct: 1179 PMLEQIVNVLMAGCQHDD-----SQLQMASAKCLGELGAIDASYLPSNYNFASPQHLPLN 1233
Query: 759 CSDDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVL 818
DD L L R ++ +T DS +LAIQE L I G +
Sbjct: 1234 ILSDDFAV-LALTSLCRGYQFQQNTKHVDSFSLAIQETLAICG----------------I 1276
Query: 819 KDKEHLTVVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVST 878
KE V + W +++++ P L S + +
Sbjct: 1277 SPKEQKKV-------------------QLWQSLPARMRQLMEPMLHSCYTCVHRPSTCLQ 1317
Query: 879 GPIYLPSMS---FRRWIYYWIRKLTVHATGS-RASIFNACRGIVRHDMQTAIYLLPYLVL 934
P++ S + W + W +L + S R + ++ + ++ D PY++L
Sbjct: 1318 QPLFGSHYSHNYYEEWAFLWASRLIDYLPSSGRRHLLSSYKPCIKRDSNMLSTFYPYILL 1377
Query: 935 NAVCHGTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQWVD 994
+A+ T E R I +E ++VL A ++ S +SV G Q + + +N + +
Sbjct: 1378 HALLECTTEQRNHIQEEFMAVLQA--NEESSSSVRGR--------QELGAIKENAFKQFE 1427
Query: 995 DVKQELA---LSESLTSKQQGSKSKHP--ASSMHQDQL------LTQCQYVSG------- 1036
K L+ +L S ++ S+ P A + + L L + Q + G
Sbjct: 1428 SRKYAAGIKPLASTLVSDRKEDSSRVPRLAGKLCAELLDFLQRWLREWQRIHGRSTGGKP 1487
Query: 1037 -------------LLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGT 1083
L+ IPK+ ++RAS+ C YAR+L Y ES++ E E
Sbjct: 1488 PETIDSNYRKIHEFLNLIPKLLVSRASYNCGEYARALSYLESYLEE--------GEDKSQ 1539
Query: 1084 FEDEDVSFLMEIYSFLDEPDGLSGLARLHK-SLSLQDELLSNKKSGNWAEVFTSCEQAL- 1141
E +FL+E+Y L +PD + G ++ +S+ ++L N+ ++ TS EQ L
Sbjct: 1540 RLLEQFTFLVEVYGSLRDPDSVEGAVQVRSYDMSVTQDILVNRLVERQQDMITSYEQLLS 1599
Query: 1142 ---QMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAA--WRL 1196
QM+P V+ D L + ++ DGL R+ C ++ WRL
Sbjct: 1600 STDQMQPDHVRAMIDAY--LRDTPKTAQLIA--DGLWQRLSDRYSDQCFAECKSELLWRL 1655
Query: 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHF-SVSDKIGVSKQVL 1255
G +D M+E S + CS K+ + + + F S+ D G+ + VL
Sbjct: 1656 GSYDEMEELQSNWPAQ---CSQG---------CLKLRRPLTTRIEFDSLLD--GMRESVL 1701
Query: 1256 --IAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDL-KFSKLMA 1312
+ +A SY AY ++KLHL+ EL + +EK D KLM
Sbjct: 1702 EELRSCSAVQQHSYANAYDAVLKLHLVHELH------CSQELVEKLEQDRDEDNQEKLMK 1755
Query: 1313 N----WENRLKYTQPSLWAREPLLAFRRMVFGA------------SGLGAEVGNCWLQYA 1356
N W+ RL+ QP + +E + +FRR + L E+ WL A
Sbjct: 1756 NYFDDWQYRLQIVQPQVRIQESIYSFRRNILAELQRRLTDRNHLLPHLKTELARIWLNSA 1815
Query: 1357 KLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416
++ R AG + A IL+A + +E+AKLLW ++ D +A N L + + ++
Sbjct: 1816 QINRNAGQLQRAQLYILKAAEYQPSGLFIERAKLLW--QKGDQVMA---MNYLEEQLSIM 1870
Query: 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH--YTGQKQK---ED 1471
S ++ L+ E+R L +++ Y+ + +
Sbjct: 1871 RSGCQGNVKQLA----------------AEQRH----LFFRGKYLQAVYSAESMHLCADA 1910
Query: 1472 VITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLF 1531
V+ + + E + MA++ + +L RQ SE P+ ++ + +V++
Sbjct: 1911 VLKYFQEAIAVHRQSESCHVQMAQFLEKIL---EARQGGKSE--PTGEQDDMLI-NVMVN 1964
Query: 1532 YAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLP 1591
YAK L G ++++Q++PRL++LW D S++ + +K +N ++ C LP
Sbjct: 1965 YAKSLRYGSEHVYQSMPRLISLWLDTTE-----SSTNTEQVKKMN----DLLTNCCTALP 2015
Query: 1592 AYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAA 1651
+ TV Q++SR+CH ++ +++++I ++ YPQQ LW++ +P + A
Sbjct: 2016 TAVFYTVYSQMLSRLCHPVNDVFTVLRNVIIKLVEAYPQQSLWML-------LPHFKSAK 2068
Query: 1652 AEIIQAAK----KGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINIS---TEFS 1704
A I+ K ++ L F SL + L+ L + + RT +S T S
Sbjct: 2069 AHRIKRCKLVLTDSRLQNSTFQKLLQDFNSLTERLMDLT-NKEVTLDRTYKLSDLDTRLS 2127
Query: 1705 ALKRMMPLG-IIMPIQQSLTVTLP-PQDANLTESPS--SDIFSASDLPT----ISGIADE 1756
L + I++P ++ + TLP D+N +E ++ + + P ISG +
Sbjct: 2128 KLCKQPEFSQILLPFEKYMQPTLPLNSDSNSSEGSHLPANQSTVNWFPYQQIYISGFQES 2187
Query: 1757 AEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRK 1816
IL S +PKK+ + SDG L KPKDDLR+D+R+MEF ++ R L + +R+R+
Sbjct: 2188 VLILRSAAKPKKLTIRCSDGKDYDVLVKPKDDLRRDARLMEFNGLVKRYLHQDAPARQRR 2247
Query: 1817 LYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGK 1876
L+IRT+AV+P E+CG+VEW+P+ R+I ++Y + + Q++ +
Sbjct: 2248 LHIRTYAVLPFNEECGLVEWLPNLASYRSICMNLY---AQRRLVMSTRQLQSLAVPLHES 2304
Query: 1877 IP-EDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDR 1935
I + E+ +++P PPVF +W F+ P +W+ AR Y T AV SMVG+I+GLGDR
Sbjct: 2305 IERKREVFTKQLVPAHPPVFQEWLRQRFATPHSWYEARNTYIRTVAVMSMVGYILGLGDR 2364
Query: 1936 HGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKSYGLCAMHFIVILSPL 1995
HGENILF GD VHVDF+CLF++G LL PE+VPFRLT + IV + PL
Sbjct: 2365 HGENILFAEGNGDAVHVDFNCLFNQGELLPYPEVVPFRLTH----------NMIVAMGPL 2414
|
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates various proteins, which collectively inhibits DNA replication and mitosis and promotes DNA repair and recombination. Phosphorylates grp/CHK1. Phosphorylates 'Ser-137' of histone variant H2AX/H2AV at sites of DNA damage, thereby regulating DNA damage response mechanism. Essential for the DNA damage checkpoint in larval imaginal disks and neuroblasts and for the DNA replication checkpoint in the embryo. Has also an essential role during early nuclear divisions in embryos, where it is required to delay mitosis in response to incomplete DNA replication. Also plays an important role during meiosis, where it may monitor double-strand-break repair during meiotic crossing over, to regulate the progression of prophase I, and to enforce metaphase I delay observed at the end of oogenesis. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q59LR2|ATR_CANAL Serine/threonine-protein kinase MEC1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MEC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 360 bits (925), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 319/1321 (24%), Positives = 590/1321 (44%), Gaps = 207/1321 (15%)
Query: 705 LSTLISSLLRGCAEESRTVVGQ--KLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSD- 761
L+ I+SL+R + + + + CA L +GA+D K + + + I SD
Sbjct: 1057 LTPAITSLVRTILDTAAKFKNKDTTVSTACAKALAIIGALDSNKFQFKTVKSLIIISSDF 1116
Query: 762 ------DDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGCEASLDENVPASIL 815
+ +LI+ HL + F A+ D Q AA +Q L + G LDE V
Sbjct: 1117 EDIEENSTFLVDLIENHLLKIFWASNDPHKQLFAAYVMQSFLAVMG----LDERV----- 1167
Query: 816 QVLKDKEHLTVVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDS 875
+N + + W++F+ K + P L S++ P
Sbjct: 1168 ------------------------LNTKDNRVWNKFTDVAKSTLTPFLKSKYAAPKPKLD 1203
Query: 876 VSTGPIYLPSMSFRRWIY----YWIRKLTV------HATGSRASIFNACRGIVR--HDMQ 923
P + M + W+ + +++ ++ +R IF + +++ HD+
Sbjct: 1204 NLKFPFFKLGMKYETWLVDVTLFLLKRASIDNGKGNQKAKTRKLIFQSYAVLIQREHDIP 1263
Query: 924 TAIYLLPYLVLNAVCH-GTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAI 982
+LL Y+ L+ V + G E + +E L +L + S Q ++C QAI
Sbjct: 1264 LCEHLLRYVALSHVINEGVPE---DLHKEFLHILKMDSKSTSPDRAE----QLKLCYQAI 1316
Query: 983 FTLLDNLGQWVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIP 1042
F++LD QWV +++ ++ + S+ S +H ++ + S+ P
Sbjct: 1317 FSVLDYFNQWVSNMR---VVTSNSGSELTSSDIRHKMDAVAK-------------FSSFP 1360
Query: 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFED-EDVSFLMEIYSFLDE 1101
+ L S C AY R++MY E+ R+ +EKS + + L ++Y+ +D+
Sbjct: 1361 QDLLTTRSAECDAYERTIMYLENCYRDSQ------SEKSFKLSNLNGAATLQDMYAHIDD 1414
Query: 1102 PDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCL--- 1158
D L+G ++ + +L ++L + + S +W+ S E AL SV ++ +L L
Sbjct: 1415 YDALNGTLKMFSTNNLNEKLTTFQYSDSWSLAHESFE-ALGSTKNSVSNNTKLLQSLNEH 1473
Query: 1159 -LNMCHLQAMVTHVDGL-ISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLC 1216
L L + D + IP W + G+ AA G ++++L + G
Sbjct: 1474 GLYNEVLSTLSARTDSNDLKSIPL---DWSLMGLHAAVYKGDSKQLEKWLQVTNSIG--- 1527
Query: 1217 SSSESNASFDMDVAKILQAMMKK--DHFSVS-DKIGVSKQVLIAPLAAAGMDSYTRAYPF 1273
+ + ++AK L + + D F S DK+ ++ L + ++TR
Sbjct: 1528 KPHDMETMINYELAKALSFLFQSRIDMFKGSMDKL---YNIIGCSLVPSVSSNFTRNITL 1584
Query: 1274 IVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLA 1333
+ +LH + ++ +L DS E + DL+ + +++ + +L
Sbjct: 1585 MNQLHAIYDVS--LIVLSQDS--EDTL---DLRIGNVDQDFD-----------TQRNILT 1626
Query: 1334 FRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWS 1393
+ A + L+ + L R + +TR+I++A + ++E A+L W+
Sbjct: 1627 LHNVANTVMKNPAMISKNLLRESSLARKYNRLDISTRSIVQAMSLEDDQANIEFAELQWA 1686
Query: 1394 TRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKT 1453
+ AI L +L + + ++ + AK
Sbjct: 1687 QGKQSEAIKCL------------------------------FDILKDNK-FHDDKSKAKV 1715
Query: 1454 LLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSE 1513
L Y+ W+ + +IT Y++ L + EK F + KY + ++ + N E
Sbjct: 1716 QLQYANWLDESNHLSAHQIITEYNKAFHLNMVDEKCNFDIGKYYNKLM------ESSNDE 1769
Query: 1514 IGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLK 1573
G E + Y + + G +F+ALP++LT+W DF ++ ++ N+ LK
Sbjct: 1770 SGEYEHL-------TVRNYIRAVSVGTTYIFEALPKVLTIWLDFADKSNKSNAAENR-LK 1821
Query: 1574 NVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGL 1633
+++ + + ++P Y W TVL Q++SRI H++E +++K I+ +V +YP+ +
Sbjct: 1822 ----QIIDDLYNAIANVPNYSWYTVLTQILSRIVHEHEPSFKVLKRIVQNVTLEYPKHCV 1877
Query: 1634 WIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGN--------SANNLFGQFTSLIDHLIKL 1685
W + + ++S+ R+ E++ + GN +A NLF + + + I
Sbjct: 1878 WYIFSHARSSDKVRKRRVRELLNQV--CTQDGNDTLPKSTMAAGNLFAKLIKIAELKI-- 1933
Query: 1686 CFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSAS 1745
++ R +++ +F +++PIQ +L + +P ++L FS S
Sbjct: 1934 ---PKTNRKRQMSLLQDFEVDLSEPIDDLVIPIQSNLQIQIP---SHLNSKHKG--FSRS 1985
Query: 1746 DLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRL 1805
+ G D I SLQ P+++ + GSDG + K DD RKD++++EFT M+NR+
Sbjct: 1986 SSISFDGFDDNVNIFFSLQMPRQLTVRGSDGNAYRLMVK-SDDTRKDAKVVEFTTMVNRI 2044
Query: 1806 LSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQ 1865
LS E+R+R L I ++V+PL++ G++E+V + + ++ ++ + + RQ
Sbjct: 2045 LSTSTEARKRGLQIANYSVVPLSDHFGIIEFVMNVQTMKGVISE------QRKRQGIPIN 2098
Query: 1866 IKRIY---DQFQGKIPEDEMLKTKILPMF-------PPVFHKWFLTTFSEPAAWFRARVA 1915
++++ D Q +D K++ F PPV H WF+ FS+P+AW+ AR A
Sbjct: 2099 ERKVFMHIDSLQKAKKKDSKQLDKLVAGFRAIMDRCPPVLHTWFVEQFSDPSAWYMARNA 2158
Query: 1916 YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLT 1975
+ ++AV SMVG+I+GLGDRH ENIL TG +H+DF CLF+KG L PE+VPFRLT
Sbjct: 2159 FTRSSAVMSMVGYIMGLGDRHCENILIFKNTGAVLHIDFDCLFEKGTTLPTPEIVPFRLT 2218
Query: 1976 Q 1976
Q
Sbjct: 2219 Q 2219
|
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Recruited to DNA lesions in order to initiates the DNA repair by homologous recombination. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, also involved in the regulation of DNA damage response mechanism. Required for cell growth and meiotic recombination. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2037 | ||||||
| 224078422 | 2740 | predicted protein [Populus trichocarpa] | 0.961 | 0.714 | 0.773 | 0.0 | |
| 359474997 | 2730 | PREDICTED: serine/threonine-protein kina | 0.967 | 0.721 | 0.778 | 0.0 | |
| 255560447 | 2822 | Serine/threonine-protein kinase ATR, put | 0.964 | 0.695 | 0.760 | 0.0 | |
| 356534437 | 2738 | PREDICTED: serine/threonine-protein kina | 0.965 | 0.718 | 0.757 | 0.0 | |
| 449454243 | 2716 | PREDICTED: serine/threonine-protein kina | 0.964 | 0.723 | 0.743 | 0.0 | |
| 449513043 | 2716 | PREDICTED: LOW QUALITY PROTEIN: serine/t | 0.964 | 0.723 | 0.742 | 0.0 | |
| 297801500 | 2708 | hypothetical protein ARALYDRAFT_916145 [ | 0.963 | 0.724 | 0.695 | 0.0 | |
| 18422029 | 2702 | serine/threonine-protein kinase ATR [Ara | 0.963 | 0.726 | 0.695 | 0.0 | |
| 7288126 | 2703 | AtRAD3 [Arabidopsis thaliana] | 0.963 | 0.726 | 0.695 | 0.0 | |
| 10177961 | 2810 | AtRAD3 [Arabidopsis thaliana] | 0.963 | 0.698 | 0.695 | 0.0 |
| >gi|224078422|ref|XP_002305538.1| predicted protein [Populus trichocarpa] gi|222848502|gb|EEE86049.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3148 bits (8163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1543/1994 (77%), Positives = 1727/1994 (86%), Gaps = 36/1994 (1%)
Query: 2 TESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRV 61
TE E+LDL L DE +EVR E + S+PVIV+WSGLG+ +FKRL+ LGK+E KVKR
Sbjct: 644 TEHALELLDLGLNDEAEEVRIETITSMPVIVLWSGLGLQAEMFKRLDLLGKEENIKVKRS 703
Query: 62 FPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHN 121
P + GFLSC G+CS + CKL +++ ++ +T DYL + FWCSKCD ++VHN
Sbjct: 704 IPFTLGFLSCFYGSCSIVDGPPLGECKLFIDINNEKHGKTTDYL-QGFWCSKCDRSIVHN 762
Query: 122 QELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTR 181
++ KI+ P D QS + +S+F L +++F+ LYDESSEEVQ++CVR+IRRILVHG+
Sbjct: 763 HKVHLKIMQPPDFQSARVGLNSNFPQLQSMFFKLLYDESSEEVQVACVRIIRRILVHGSE 822
Query: 182 DVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL 241
D+L+KT+SEWIKC+EFLLLNK+KA+R+AFCTQI FL+ VLS LFL+ ++ +++NE K
Sbjct: 823 DILIKTKSEWIKCVEFLLLNKKKALREAFCTQISSFLESPVLSCLFLNGDSYNKTNEQKF 882
Query: 242 LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNA 301
L ++K A +AA+DP I ETLLE +++M+AVD+HSQ FL LILLV+QLD+PHVTVRM+A
Sbjct: 883 LGLMKHALSAAEDPQIFETLLECVSQIMIAVDIHSQLFLSCLILLVDQLDHPHVTVRMSA 942
Query: 302 SRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEEL 361
SRLI KSC+FHLKGG EL++SK V I NELFDYL++R S P MVREFAEA FGVETEEL
Sbjct: 943 SRLIHKSCYFHLKGGFELILSKVVHIRNELFDYLTMRFTSHPKMVREFAEAVFGVETEEL 1002
Query: 362 VKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERR 421
V+KMIP VLPKLVVSQQDN++AV + ELAKCLNTDMVPLIV W+PKVLAFALH+AD++
Sbjct: 1003 VEKMIPIVLPKLVVSQQDNNRAVQTLFELAKCLNTDMVPLIVNWLPKVLAFALHRADKQE 1062
Query: 422 LLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTV 481
LLS L+FY Q GSDNQEIFAAALPALLDEL+CF+DGGDS EIN+RL+RVP +I++++ V
Sbjct: 1063 LLSTLQFYHDQIGSDNQEIFAAALPALLDELVCFLDGGDSVEINQRLSRVPDMIKEIARV 1122
Query: 482 LTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKI 541
LTG EDLPGFLRNHFVGLLN IDRKMLHAEDL LQKQAL+RI++LIEM+GS L TYVPK+
Sbjct: 1123 LTGGEDLPGFLRNHFVGLLNGIDRKMLHAEDLLLQKQALRRIKMLIEMMGSQLGTYVPKL 1182
Query: 542 LVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSV 601
+VLLMHAI+KESLQ EGLSVLHFFIEQL+ SPSSTKHVISQVFAALIPFLER K+NPS
Sbjct: 1183 MVLLMHAIDKESLQNEGLSVLHFFIEQLANKSPSSTKHVISQVFAALIPFLERYKENPST 1242
Query: 602 LLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661
LNKVV ILE+LVLKNR ILKQHIHEFPLLPSI L EVNKAIQEARG MTLKDQL V
Sbjct: 1243 HLNKVVNILEELVLKNRTILKQHIHEFPLLPSIPELMEVNKAIQEARGSMTLKDQLRDVV 1302
Query: 662 DGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESR 721
DGLNHENLNVRYMVVCELSKLL L+ D+T+LI GE +D+D+LS+LI++LLRGCAEESR
Sbjct: 1303 DGLNHENLNVRYMVVCELSKLLNLRRGDITSLITGEVAADMDILSSLITALLRGCAEESR 1362
Query: 722 TVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAP 781
T VGQ+LKLVCADCLGALGAVDPAKVKG S QRFKIECSDDDLIFELI KHLARAFRAAP
Sbjct: 1363 TAVGQRLKLVCADCLGALGAVDPAKVKGISSQRFKIECSDDDLIFELIHKHLARAFRAAP 1422
Query: 782 DTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMN 841
DTI+QDSAALAIQELLKIAGCEASLD S+ Q LKDK T +SG MN
Sbjct: 1423 DTIVQDSAALAIQELLKIAGCEASLDGTT--SLSQTLKDKS--TKSSSG---------MN 1469
Query: 842 MRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTV 901
RG++ WDRFS YVKEIIAPCLTSRFQLP+ +DS S GPIY PSMSFRRWI+YWI+KLT
Sbjct: 1470 TRGQRLWDRFSNYVKEIIAPCLTSRFQLPNVADSASVGPIYRPSMSFRRWIFYWIKKLTA 1529
Query: 902 HATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAAS 961
HATGSRASIFNACR +VRHDMQ AIYLLPYLVLNAVCHGTEE R IA+EIL VLDAAAS
Sbjct: 1530 HATGSRASIFNACRALVRHDMQLAIYLLPYLVLNAVCHGTEEVRHSIAEEILCVLDAAAS 1589
Query: 962 DHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESL---TSKQQGSKSKHP 1018
D+SGA+V GQSEVCIQA+FTLLDNLGQW+DD +QELALS+S SK+Q SKSK
Sbjct: 1590 DNSGAAV---GGQSEVCIQAVFTLLDNLGQWMDDFEQELALSQSFQSPASKKQASKSKGQ 1646
Query: 1019 A--SSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNP 1076
SS QDQLL QC+YVS LL+AIPK+TLARASFRCQAYARSLMYFESHVR KSG+FNP
Sbjct: 1647 GSISSTDQDQLLVQCKYVSELLTAIPKLTLARASFRCQAYARSLMYFESHVRGKSGAFNP 1706
Query: 1077 AAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTS 1136
AAE+SG FEDEDVS+LMEIYS LDEPDGLSGLA L KSLSLQD+LL NK++GNWAEV TS
Sbjct: 1707 AAERSGIFEDEDVSYLMEIYSCLDEPDGLSGLACLRKSLSLQDQLLINKRAGNWAEVLTS 1766
Query: 1137 CEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196
CEQALQMEP SVQRHSDVLNCLLNMCHLQAMVTHVDGLISR+PQYKKTWCMQGVQAAWRL
Sbjct: 1767 CEQALQMEPCSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRVPQYKKTWCMQGVQAAWRL 1826
Query: 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLI 1256
GRWDLMDEY+SGAD +GLLCS SESNASFDMDVAKILQ+MMKKD FSV++KI +SKQ LI
Sbjct: 1827 GRWDLMDEYISGADHDGLLCSGSESNASFDMDVAKILQSMMKKDQFSVAEKIALSKQALI 1886
Query: 1257 APLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWEN 1316
APLAAAGMDSY RAYPFIVKLHLL+ELE FH +LV+DSFL K F L+F+KLM NWE+
Sbjct: 1887 APLAAAGMDSYVRAYPFIVKLHLLRELEAFHTLLVDDSFLVKKFHLGHLEFTKLMENWEH 1946
Query: 1317 RLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQ 1376
RL++TQPSLWAREPLLAFRR+VFGAS LGA VG CWLQYAKLCRLAGHYETA RAILEAQ
Sbjct: 1947 RLRFTQPSLWAREPLLAFRRLVFGASSLGAHVGICWLQYAKLCRLAGHYETANRAILEAQ 2006
Query: 1377 ASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436
ASGAPNVHMEKAKLLWSTRRSDGAIAELQQ LL+ P +VVG+ A SSITSLSLVPLNP P
Sbjct: 2007 ASGAPNVHMEKAKLLWSTRRSDGAIAELQQTLLHMPEKVVGAAARSSITSLSLVPLNPQP 2066
Query: 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496
+TQ +E DIAKTLLLYSRWIHYTGQKQKEDVITLY+RVR+LQP WEKG+FY+A+Y
Sbjct: 2067 AFCDTQASSENLDIAKTLLLYSRWIHYTGQKQKEDVITLYTRVRDLQPKWEKGFFYLARY 2126
Query: 1497 CDDVLVDARKRQEENSEIGP--------------SEKRWWFYVPDVLLFYAKGLHRGHKN 1542
CD+VLVDARKRQE+N E+GP +E+RWW PDVLLFYAKGLHRGHKN
Sbjct: 2127 CDEVLVDARKRQEDNYELGPRLVPLTSTSISPSNTERRWWTSAPDVLLFYAKGLHRGHKN 2186
Query: 1543 LFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQL 1602
LFQALPRLLTLWF+FGSI QR GSSSN++LK V+ KVMSIMRGCLKDLP YQWLTVLPQL
Sbjct: 2187 LFQALPRLLTLWFEFGSIYQRCGSSSNQELKKVHDKVMSIMRGCLKDLPTYQWLTVLPQL 2246
Query: 1603 VSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGS 1662
VSRICHQNE+IV+LVK IITSV++QYPQQGLWIMAAVSKS +PSRREAAA IIQ AKKG
Sbjct: 2247 VSRICHQNEDIVKLVKRIITSVIQQYPQQGLWIMAAVSKSAVPSRREAAAAIIQEAKKGF 2306
Query: 1663 AHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSL 1722
+ GN+ +NLF QF SLIDHLI+LCFH GQSK+RTINISTEFSALKRMMPL IIMPIQQSL
Sbjct: 2307 SQGNNGSNLFVQFASLIDHLIRLCFHPGQSKARTINISTEFSALKRMMPLEIIMPIQQSL 2366
Query: 1723 TVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFL 1782
TV+LP D NLT+ +S IFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGI+ PFL
Sbjct: 2367 TVSLPTYDVNLTDPLTSVIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIEHPFL 2426
Query: 1783 CKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRG 1842
CKPKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRG
Sbjct: 2427 CKPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRG 2486
Query: 1843 LRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTT 1902
LR+ILQDIYI CGKFDRQKTNPQIKRIYDQ GK+PEDEMLK KILP+FPPVFHKWFLTT
Sbjct: 2487 LRHILQDIYIKCGKFDRQKTNPQIKRIYDQCHGKMPEDEMLKNKILPLFPPVFHKWFLTT 2546
Query: 1903 FSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL 1962
FSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL
Sbjct: 2547 FSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL 2606
Query: 1963 LLEKPELVPFRLTQ 1976
LEKPELVPFRLTQ
Sbjct: 2607 QLEKPELVPFRLTQ 2620
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474997|ref|XP_002278409.2| PREDICTED: serine/threonine-protein kinase ATR-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3139 bits (8139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1555/1998 (77%), Positives = 1749/1998 (87%), Gaps = 27/1998 (1%)
Query: 2 TESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRV 61
TES E+LDL L DE DEVR EAVIS+PVIV+WSGL VL +VF+RL+ L ++ EKVK++
Sbjct: 617 TESILEVLDLGLHDEADEVRIEAVISMPVIVLWSGLDVLRHVFRRLDFLENEKHEKVKKI 676
Query: 62 FPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHN 121
P S GFL+CL G C+ + D+ ACKL E++ SQ V+++LE FWC KCD + ++
Sbjct: 677 IPFSLGFLACLYGLCNVVAGLDETACKLFFKSENEKWSQFVEHVLEGFWCPKCDGRIAND 736
Query: 122 QELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTR 181
EL SKI++ D+Q+ ++ D+ L +I+F LYDESSEEVQ++CV VIRRIL+HG
Sbjct: 737 HELRSKILHLPDIQTVEIGLDHDYIHLQSIFFNLLYDESSEEVQVACVGVIRRILLHGVP 796
Query: 182 DVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL 241
D++LKT+SEW+KC+E LLL+K+KA+R+AFC QI +FL+D+VLS LFLD AS ++ E K
Sbjct: 797 DIVLKTKSEWVKCVENLLLHKKKAVREAFCMQISFFLEDSVLSCLFLDGEASDKTKEQKF 856
Query: 242 LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNA 301
LD IK A AA+DP + ETLLESTAE+M+AVD+ SQ FLF LILLV+QLDNPH+TVRM A
Sbjct: 857 LDKIKHALAAAEDPQVFETLLESTAEIMIAVDIQSQIFLFSLILLVDQLDNPHLTVRMTA 916
Query: 302 SRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEEL 361
SRLI +SCFFHLKGG EL++SK V I NEL+DYLS R+ASRP MV+EFAE+ GVETE+L
Sbjct: 917 SRLIHRSCFFHLKGGFELILSKVVHIRNELYDYLSTRVASRPKMVQEFAESVIGVETEDL 976
Query: 362 VKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERR 421
VKKM+P VLPKLVV+QQD++ AV + ELAKCL+TDMVPLIV W+PKVLAFALH+AD +
Sbjct: 977 VKKMVPVVLPKLVVTQQDDNLAVVTLQELAKCLDTDMVPLIVNWLPKVLAFALHRADGQE 1036
Query: 422 LLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTV 481
L SAL+FY + TGS+NQEIFAAALPALLDEL+CF+D GD DEI++RL RVP++I++V+ V
Sbjct: 1037 LFSALQFYHVHTGSNNQEIFAAALPALLDELVCFLDVGDLDEISKRLARVPQMIKEVAKV 1096
Query: 482 LTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKI 541
LTG+EDLPGFLRNHFVGLLNSIDRKMLHAEDL+LQKQALKRIE+LI+++GSHL+TYVPK+
Sbjct: 1097 LTGSEDLPGFLRNHFVGLLNSIDRKMLHAEDLALQKQALKRIEMLIKLMGSHLSTYVPKL 1156
Query: 542 LVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSV 601
+VLLMHAI+KESLQ EGLSVLHFFI QL++VSPSSTKHVISQVFAALIPFLER+K+N S+
Sbjct: 1157 MVLLMHAIDKESLQSEGLSVLHFFIGQLAKVSPSSTKHVISQVFAALIPFLEREKENLSI 1216
Query: 602 LLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661
LNKVV+ILE+LV +N+AILKQHI EFP LPSI AL +VN+ IQ+ARG M LKDQLL V
Sbjct: 1217 HLNKVVEILEELVFENKAILKQHIREFPPLPSIPALMKVNEVIQDARGSMNLKDQLLDIV 1276
Query: 662 DGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESR 721
DGL+HENLNVRYMV CELSKLL L+ +D+TALI GEA S +DVLS+LI+SLLRGCAEESR
Sbjct: 1277 DGLDHENLNVRYMVACELSKLLNLRRDDITALITGEAGSHMDVLSSLITSLLRGCAEESR 1336
Query: 722 TVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAP 781
TVVGQ+LKL+CADCLGALGAVDPAKVKG SCQRFKIECSDDDLIFELI KHLARAFRAAP
Sbjct: 1337 TVVGQRLKLICADCLGALGAVDPAKVKGISCQRFKIECSDDDLIFELIHKHLARAFRAAP 1396
Query: 782 DTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMN 841
DTI+QDSAALAIQELLKIAGCEASLDEN+ S LQ LKDKE L V SG D EM+
Sbjct: 1397 DTIVQDSAALAIQELLKIAGCEASLDENMALSTLQTLKDKEPLKVSISGVKSIDCCDEMS 1456
Query: 842 MRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTV 901
RG++ WDRFS YVKEIIAPCLTSRFQLP+ DS S GPIY PSMSFRRWI++WIRKLTV
Sbjct: 1457 RRGQRLWDRFSNYVKEIIAPCLTSRFQLPNVVDSASAGPIYRPSMSFRRWIFFWIRKLTV 1516
Query: 902 HATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAAS 961
ATGSRASIFN+CRGIVRHDMQTAIYLLPYLVLNAVCHG++EAR GI EILSVLDAAAS
Sbjct: 1517 LATGSRASIFNSCRGIVRHDMQTAIYLLPYLVLNAVCHGSKEARYGITAEILSVLDAAAS 1576
Query: 962 DHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESL---TSKQQGSKSK-- 1016
D+SGA+ H GQSEVCIQA+FTLLDNLGQWVDDV+Q++ALS+S S+QQ SK K
Sbjct: 1577 DNSGAADHESGGQSEVCIQAVFTLLDNLGQWVDDVEQDIALSQSFQSAVSRQQSSKLKDQ 1636
Query: 1017 --HPASSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSF 1074
+P S D LL QC+YVS LL+AIPKVTLA+ASFRCQAYARSLMYFESHVR KSGSF
Sbjct: 1637 NPNPTDS---DLLLIQCKYVSELLAAIPKVTLAKASFRCQAYARSLMYFESHVRGKSGSF 1693
Query: 1075 NPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVF 1134
NPAAEK G FEDED+SFLMEIYS LDEPDGLSGLA L SLSLQD+LL NKK+GNWAEV
Sbjct: 1694 NPAAEKGGFFEDEDISFLMEIYSGLDEPDGLSGLACLRTSLSLQDQLLINKKAGNWAEVL 1753
Query: 1135 TSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAW 1194
TS EQALQMEPTSVQRHSDVLNCLLNMCHLQAMV HVDGLISRIP+YKKTWCMQGVQAAW
Sbjct: 1754 TSSEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVIHVDGLISRIPKYKKTWCMQGVQAAW 1813
Query: 1195 RLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQV 1254
RL RW+LMDEYL GAD+EGLLCSSSESNASFDMDV KILQAMMKKD FSV++KI +SKQ
Sbjct: 1814 RLSRWELMDEYLDGADKEGLLCSSSESNASFDMDVVKILQAMMKKDQFSVAEKIALSKQA 1873
Query: 1255 LIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANW 1314
LIAPLAAAGMDSYTRAYPF+VKLH+L+ELEDFH +LV++SFLEKSF +DL+F+K+M NW
Sbjct: 1874 LIAPLAAAGMDSYTRAYPFVVKLHMLRELEDFHQLLVDESFLEKSFDLADLRFTKMMENW 1933
Query: 1315 ENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILE 1374
NRL++TQPSLWAREPLLA RR+V GASGLGA+VG+CWLQYAKLCR AGHYETA RAILE
Sbjct: 1934 GNRLRFTQPSLWAREPLLALRRLVLGASGLGAQVGDCWLQYAKLCRSAGHYETANRAILE 1993
Query: 1375 AQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNP 1434
AQASG+PNVHMEKAKLLWSTRRSDGAIAELQQ+LLN PVE+VGS AISSITS SLVP NP
Sbjct: 1994 AQASGSPNVHMEKAKLLWSTRRSDGAIAELQQSLLNMPVEIVGSAAISSITSRSLVPANP 2053
Query: 1435 LPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMA 1494
P+L +TQT NE RDIAKTLLLYSRWIHYTGQKQKEDV++LYSRVRELQP WEKGYFYMA
Sbjct: 2054 PPLLCDTQTSNENRDIAKTLLLYSRWIHYTGQKQKEDVMSLYSRVRELQPRWEKGYFYMA 2113
Query: 1495 KYCDDVLVDARKRQEENSEIGP----------------SEKRWWFYVPDVLLFYAKGLHR 1538
KYCD+VLVDARKRQEEN E P SEK WW Y+PDVLLFYAKGLHR
Sbjct: 2114 KYCDEVLVDARKRQEENFEPCPRIIPSKSAIVASTNLNSEKHWWSYLPDVLLFYAKGLHR 2173
Query: 1539 GHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTV 1598
GHKNLFQALPRLLTLWFDFGS+ QR+GSSSNK+ KN++GKVM IMRGCLKDLP YQWLTV
Sbjct: 2174 GHKNLFQALPRLLTLWFDFGSVYQRSGSSSNKEWKNIHGKVMGIMRGCLKDLPTYQWLTV 2233
Query: 1599 LPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAA 1658
LPQLVSRICHQNEEIVRLVK IITSVLRQYPQQ LWIMAAVSKST+PSRREAAAEIIQAA
Sbjct: 2234 LPQLVSRICHQNEEIVRLVKLIITSVLRQYPQQALWIMAAVSKSTVPSRREAAAEIIQAA 2293
Query: 1659 KKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPI 1718
+KGS+ GNS NNLF QF +LIDHLI+LCFH+GQ K+RTIN+STEFSALKRMMPLGIIMPI
Sbjct: 2294 RKGSSSGNSGNNLFVQFATLIDHLIRLCFHSGQPKARTINLSTEFSALKRMMPLGIIMPI 2353
Query: 1719 QQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIK 1778
QQSLTVTLP + N +S SDIF+ SDLPTISGIADEAEILSSLQRPKKIVLLGSDG++
Sbjct: 2354 QQSLTVTLPAYEMNHGDSLISDIFT-SDLPTISGIADEAEILSSLQRPKKIVLLGSDGVQ 2412
Query: 1779 RPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVP 1838
PFLCKPKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVP
Sbjct: 2413 CPFLCKPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVP 2472
Query: 1839 HTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKW 1898
HTRGLR+ILQDIYISCGKFDRQKTNPQIKRIYDQ QGK+ EDEMLK KILPMFPPVFHKW
Sbjct: 2473 HTRGLRHILQDIYISCGKFDRQKTNPQIKRIYDQCQGKMLEDEMLKNKILPMFPPVFHKW 2532
Query: 1899 FLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF 1958
FL FSEPAAWFRAR+AY+HTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF
Sbjct: 2533 FLNNFSEPAAWFRARLAYSHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF 2592
Query: 1959 DKGLLLEKPELVPFRLTQ 1976
DKGL LEKPELVPFRLTQ
Sbjct: 2593 DKGLQLEKPELVPFRLTQ 2610
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560447|ref|XP_002521238.1| Serine/threonine-protein kinase ATR, putative [Ricinus communis] gi|223539506|gb|EEF41094.1| Serine/threonine-protein kinase ATR, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3121 bits (8092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1511/1986 (76%), Positives = 1722/1986 (86%), Gaps = 22/1986 (1%)
Query: 2 TESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRV 61
TES E+LDL L D +EVR E ++S+PVIV+WSGL VL +FKRLE LG++ ++VK++
Sbjct: 620 TESVMEVLDLGLHDGAEEVRLETIVSMPVIVLWSGLDVLAQMFKRLEFLGREVHDRVKQI 679
Query: 62 FPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHN 121
P S GF+SCL G CSS+ ++ CKL L++ + SQTVDYLL+ FWCS C+ VV N
Sbjct: 680 IPFSLGFMSCLYGCCSSVDGLERGECKLYLDINNVKHSQTVDYLLQGFWCSICEKGVVPN 739
Query: 122 QELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTR 181
E+ SKI+ D+ S ++ F+ DF L +++F+ LYD + EEVQ+ CVR+I RIL+HGT
Sbjct: 740 HEVYSKIIQLPDIPSGEVGFNCDFIHLQSLFFKLLYDGALEEVQVGCVRIIHRILLHGTS 799
Query: 182 DVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL 241
++L KTR EWI+CIEFLLLN ++A+R+AFCTQI +FL D+VLS LFLDE++ S+S E
Sbjct: 800 NILTKTRFEWIRCIEFLLLNTKRAVREAFCTQISFFLNDSVLSCLFLDEDSPSKSKEQNF 859
Query: 242 LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNA 301
LD++K + AA D I+ETLLES A++M+AVD S+ FL LILLV+QLDNPH+TVRMN+
Sbjct: 860 LDILKDSLVAAKDSPIVETLLESIAQIMIAVDFSSELFLSSLILLVDQLDNPHMTVRMNS 919
Query: 302 SRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEEL 361
SRLI+KSCFFHLKGG EL++SKAV I NELFDYL++ LASRP+MV+EFAEA F V T++L
Sbjct: 920 SRLIKKSCFFHLKGGFELILSKAVHIRNELFDYLTMSLASRPVMVQEFAEAIFDVGTDKL 979
Query: 362 VKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERR 421
V+KMIP VLPKLVVS QD D+A + EL K +N+D+VPLIV W+PKVLAFALH+A+ +
Sbjct: 980 VEKMIPIVLPKLVVSHQDKDKAFLALLELVKYVNSDLVPLIVNWLPKVLAFALHRANRQE 1039
Query: 422 LLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTV 481
LLS L+FY QTGSDNQEIFAAALPALLDEL+CF DGG+ EI +RL+RVP +I++++ V
Sbjct: 1040 LLSTLQFYHNQTGSDNQEIFAAALPALLDELVCFQDGGNLVEIRQRLSRVPEMIKEIAKV 1099
Query: 482 LTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKI 541
LTG EDLPGFLRNHFVGLLNSIDRKMLH++D +QKQAL+RI+ILIEM+GS L TYVPK+
Sbjct: 1100 LTGAEDLPGFLRNHFVGLLNSIDRKMLHSQDSLVQKQALERIKILIEMMGSQLNTYVPKL 1159
Query: 542 LVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSV 601
+VLLMHAINKESLQ EGLS+LHFFI QL+ SPSSTKH+ISQV AAL P LE+ K++PS+
Sbjct: 1160 MVLLMHAINKESLQSEGLSLLHFFIMQLANKSPSSTKHIISQVLAALFPILEKYKESPSM 1219
Query: 602 LLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661
LNKVVKILE+LVLKN+ +LKQHI EFP LPSI L EVN+ IQEARG MTLKDQL V
Sbjct: 1220 HLNKVVKILEELVLKNKTVLKQHICEFPPLPSILELMEVNEFIQEARGSMTLKDQLRDVV 1279
Query: 662 DGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESR 721
DGLNHENLNVRYMV CEL+KLL L+ ED+TALI GE +++DVLS+LI+SLLRGCAEESR
Sbjct: 1280 DGLNHENLNVRYMVACELNKLLNLRREDLTALITGEVAANMDVLSSLITSLLRGCAEESR 1339
Query: 722 TVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAP 781
TVVGQ+LKLVCADCLGALGAVDPAKVKG SCQRFKIECSDDDLIFELI KHLARAFRAAP
Sbjct: 1340 TVVGQRLKLVCADCLGALGAVDPAKVKGSSCQRFKIECSDDDLIFELIHKHLARAFRAAP 1399
Query: 782 DTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMN 841
DT++QDSAALAIQELLKIAGC ASLDENV AS+ Q LK+K ++N MN
Sbjct: 1400 DTVVQDSAALAIQELLKIAGCGASLDENVAASLSQPLKEK-----------STENSSGMN 1448
Query: 842 MRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTV 901
RG++ WDRFS YVKEIIAPCLTSRFQLP+ +DS S GPIY PSMSFRRWI++WI+KLT
Sbjct: 1449 NRGQRLWDRFSNYVKEIIAPCLTSRFQLPTVADSTSAGPIYRPSMSFRRWIFFWIKKLTA 1508
Query: 902 HATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAAS 961
HATGSRASIF ACRGIVRHDMQ AIYLLPYLVLNAVCHG EEARLGIA+EILSVLDAAAS
Sbjct: 1509 HATGSRASIFTACRGIVRHDMQIAIYLLPYLVLNAVCHGIEEARLGIAEEILSVLDAAAS 1568
Query: 962 DHSGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELALSES---LTSKQQGSKSKH 1017
+++GA H IS GQSEVCIQA+FTLLDNLGQWVDD++QELALS+S L SK+Q S+SK
Sbjct: 1569 ENTGAVSHVISGGQSEVCIQAVFTLLDNLGQWVDDIEQELALSQSFQTLASKKQASRSKD 1628
Query: 1018 PAS--SMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFN 1075
+S + QDQLL+QC+YVS LL IPK+TLARAS+RCQAYARSLMYFESHVREKSGSFN
Sbjct: 1629 QSSFPNTDQDQLLSQCKYVSELLIVIPKLTLARASYRCQAYARSLMYFESHVREKSGSFN 1688
Query: 1076 PAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFT 1135
PAAE+SG FED+DVSFLMEIYS LDEPDGLSGLA L KSLSLQD+LL NKK GNWAEV T
Sbjct: 1689 PAAERSGMFEDDDVSFLMEIYSCLDEPDGLSGLACLRKSLSLQDQLLINKKGGNWAEVLT 1748
Query: 1136 SCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195
CEQALQMEPTSV RHSDVLNCLLNMCHLQ MVTHVDGL+SR PQYKKTWCMQGVQAAWR
Sbjct: 1749 FCEQALQMEPTSVHRHSDVLNCLLNMCHLQTMVTHVDGLVSRFPQYKKTWCMQGVQAAWR 1808
Query: 1196 LGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVL 1255
L +WDLM+EYLSGADEEGL+CSSSESNA FDM+VAKI+QAMMKKDHFSV++KI +SKQ L
Sbjct: 1809 LSKWDLMNEYLSGADEEGLVCSSSESNACFDMNVAKIIQAMMKKDHFSVAEKIALSKQAL 1868
Query: 1256 IAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWE 1315
IAPLAAAGMDSY RAYPFIVKLHLL+ELEDFH L + SFLEK F DL F+KLM NWE
Sbjct: 1869 IAPLAAAGMDSYMRAYPFIVKLHLLRELEDFHTFLGDGSFLEKKFHLGDLAFTKLMDNWE 1928
Query: 1316 NRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEA 1375
NRL++TQPSLWAREPLLAFRR+VFGAS LGA+VGNCW QYAKLCRLAGHYETA RAILEA
Sbjct: 1929 NRLRFTQPSLWAREPLLAFRRLVFGASDLGAQVGNCWRQYAKLCRLAGHYETANRAILEA 1988
Query: 1376 QASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435
QASGAPNVHMEKAKLLWSTRRSDGAIAELQQ LL+ P + VGS A + ITSLSLVPLNP
Sbjct: 1989 QASGAPNVHMEKAKLLWSTRRSDGAIAELQQALLHMPEKAVGSAARTLITSLSLVPLNPQ 2048
Query: 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495
+ Q LNE +DIA TLLLY+RWIHYTGQKQKEDVITLYSRVRE+QP W+KG+FY+AK
Sbjct: 2049 SSPCDAQALNENQDIANTLLLYTRWIHYTGQKQKEDVITLYSRVREMQPKWDKGFFYLAK 2108
Query: 1496 YCDDVLVDARKRQEENSEIG-----PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRL 1550
YCD+VLVDARKRQ++NSE+G +EK WW++VPDVLLFYAKGLH+GHKNLFQALPRL
Sbjct: 2109 YCDEVLVDARKRQDDNSELGRRAVPNTEKHWWYHVPDVLLFYAKGLHKGHKNLFQALPRL 2168
Query: 1551 LTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQN 1610
LTLWFDFGSI R GSSS++D+K V+GKVMSIMRGCLKDLP YQWLTVLPQLVSR+CHQN
Sbjct: 2169 LTLWFDFGSIYLRCGSSSDEDMKKVHGKVMSIMRGCLKDLPTYQWLTVLPQLVSRVCHQN 2228
Query: 1611 EEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANN 1670
EE+V+LV+ IIT VLRQYPQQ LWIMAAVSKST+PSRREAAA II AKKG + GN+ +N
Sbjct: 2229 EEVVKLVRCIITCVLRQYPQQALWIMAAVSKSTVPSRREAAAAIIHDAKKGFSQGNNGSN 2288
Query: 1671 LFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQD 1730
LF QF SLIDHLIKLCFH GQ+++RTINISTEFS+LKRMMPLGIIMPIQQSL V+LP +
Sbjct: 2289 LFVQFASLIDHLIKLCFHPGQARARTINISTEFSSLKRMMPLGIIMPIQQSLAVSLPTYN 2348
Query: 1731 ANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLR 1790
+LT+S +SD+FSASDLPTISGI+DEAEILSSLQRPKKIVLLGSDGI+RPFLCKPKDDLR
Sbjct: 2349 VSLTDSLTSDVFSASDLPTISGISDEAEILSSLQRPKKIVLLGSDGIERPFLCKPKDDLR 2408
Query: 1791 KDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDI 1850
KD+RMMEF AMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR+ILQD+
Sbjct: 2409 KDARMMEFNAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRHILQDL 2468
Query: 1851 YISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWF 1910
YI+CGKFDRQKTNPQIKRIYDQ QGK+PEDEMLK KI PMFPPVFHKWFLTTFSEPAAWF
Sbjct: 2469 YITCGKFDRQKTNPQIKRIYDQCQGKMPEDEMLKNKIFPMFPPVFHKWFLTTFSEPAAWF 2528
Query: 1911 RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELV 1970
RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL LEKPELV
Sbjct: 2529 RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLQLEKPELV 2588
Query: 1971 PFRLTQ 1976
PFRLTQ
Sbjct: 2589 PFRLTQ 2594
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534437|ref|XP_003535761.1| PREDICTED: serine/threonine-protein kinase ATR-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3076 bits (7976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1517/2003 (75%), Positives = 1716/2003 (85%), Gaps = 37/2003 (1%)
Query: 7 EILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISF 66
E+LDL L DE +EVR EA IS+PV+V+WSGL V + VF+ +E L KD EKVK+ P+S
Sbjct: 620 EVLDLGLHDEAEEVRTEAAISIPVMVLWSGLDVSSPVFEIMEYLKKDN-EKVKKFLPLSL 678
Query: 67 GFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHN-QELS 125
G LSCL G S+ D N CKL +NV++ + TVD LL+ F CSKC++N + N E
Sbjct: 679 GLLSCLYGCRRSVSDSHINECKLFVNVKNGRMCWTVDCLLQGFCCSKCNSNFICNLNEQQ 738
Query: 126 SKIVNPSDVQSKDLNFHSDFSF--LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+ I++ S + D +F D +F L +++FE L+DESSE+VQ+SCVRVI RIL HG D+
Sbjct: 739 APIIHRSGMHGADADFSLDCTFIQLQSLFFELLFDESSEDVQISCVRVIHRILAHGASDI 798
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
LLKTR EWIKC+EFLL ++ K +R+AFC+QI +F+ D +LSS+F + +S E K LD
Sbjct: 799 LLKTRFEWIKCVEFLLTSRSKELREAFCSQIRFFVDDLILSSIF--SGNADKSKEQKFLD 856
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303
IK A T AD P ILETL+E TAE+M+AV + S+ FL LILLV+QLD+ HVTVRMNASR
Sbjct: 857 TIKHAMTVADGPHILETLMECTAEIMVAVSIDSKLFLCSLILLVDQLDSTHVTVRMNASR 916
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI KSC+FHLKGG EL++SK + ICNEL+DYLS RLASRP++VREFAEA FGVET+ELVK
Sbjct: 917 LIHKSCYFHLKGGLELILSKDLHICNELYDYLSERLASRPVLVREFAEAVFGVETKELVK 976
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KMIP VLPKLVVSQ N QAV+ + ELAKCLNTDMVPLIV W+PKVLAFALHQ D+++L+
Sbjct: 977 KMIPFVLPKLVVSQHYNSQAVDTLYELAKCLNTDMVPLIVNWLPKVLAFALHQTDDQQLI 1036
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
SA++FY QTGSD QEIFAAALPALLDEL+CF D GDS+EIN RL RVP++I+ ++ VLT
Sbjct: 1037 SAVQFYHAQTGSDKQEIFAAALPALLDELVCFTDCGDSEEINRRLARVPQMIKGIAKVLT 1096
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
G EDLPGFLRNHFVGLLNSIDRK+LHA+D L++QAL RIE+LI M+GSHL TYVPK++V
Sbjct: 1097 GAEDLPGFLRNHFVGLLNSIDRKILHADDFMLRRQALDRIEMLIRMMGSHLNTYVPKLMV 1156
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLM++I+KE LQ EGLSVLHFFI+QL++VSPSS KH+ISQVFA+L+PFLERDK+NPS+ L
Sbjct: 1157 LLMYSIDKEPLQKEGLSVLHFFIKQLAKVSPSSIKHIISQVFASLLPFLERDKENPSIHL 1216
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
+KVV ILE+LVLKNR ILKQHI EFP LP I AL EVNKAI++ARG MTLKDQL VDG
Sbjct: 1217 DKVVTILEELVLKNRVILKQHICEFPPLPCIPALIEVNKAIEDARGTMTLKDQLRDVVDG 1276
Query: 664 LNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
LNHENLNVRYMVVCEL KLL + +DVTALI EA SDLDVLS+LI+SLLRGCAEESRT
Sbjct: 1277 LNHENLNVRYMVVCELRKLLNSRWKDVTALITAEAGSDLDVLSSLITSLLRGCAEESRTT 1336
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGALGAVDPAKVKGFSCQRFKI+CSDDDLIFELI KHLARAFR+APDT
Sbjct: 1337 VGQRLKLVCADCLGALGAVDPAKVKGFSCQRFKIQCSDDDLIFELIHKHLARAFRSAPDT 1396
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
+IQDSAALAIQELLK AGCEASLDEN + Q KD+++ V+S ++ MN R
Sbjct: 1397 VIQDSAALAIQELLKFAGCEASLDENASTTTSQAQKDEDNHKAVSSKIKSTNGSKGMNNR 1456
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKEIIAPCLTSRFQLP +DS S GPIY SMSFRRWI++WIRKLT HA
Sbjct: 1457 GQKLWDRFSNYVKEIIAPCLTSRFQLPKVADSTSAGPIYRTSMSFRRWIFFWIRKLTAHA 1516
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGT+EAR GI +EILSVLDAAAS++
Sbjct: 1517 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTQEARQGITEEILSVLDAAASEN 1576
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELALSES--LTSKQQGSKSKHPAS 1020
SGASVHG S GQSEVCIQA+FTLLDNLGQWVDDV+Q+LALS S + S+QQ SK S
Sbjct: 1577 SGASVHGFSGGQSEVCIQAVFTLLDNLGQWVDDVEQDLALSSSQPMVSRQQKSKGLSSNS 1636
Query: 1021 SMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEK 1080
QDQLL QC+YVS LL AIPKVTLARASFRCQA+ARSLMYFES+VREKSG+FNPAAE+
Sbjct: 1637 LTDQDQLLVQCKYVSELLCAIPKVTLARASFRCQAFARSLMYFESYVREKSGAFNPAAER 1696
Query: 1081 SGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQA 1140
SG FED+DVS LMEIYS LDEPDGLSGL+ L K L LQD LL NKK+GNWA+V TSCEQA
Sbjct: 1697 SGIFEDQDVSHLMEIYSCLDEPDGLSGLSCLSKFLRLQDHLLMNKKAGNWADVLTSCEQA 1756
Query: 1141 LQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200
LQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK WCMQGVQAAWRLGRWD
Sbjct: 1757 LQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKAWCMQGVQAAWRLGRWD 1816
Query: 1201 LMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLA 1260
LMDEYL GA+E+GL+C SSESNASFD++VAKILQAMMK+DHFSV++KI +SKQ LIAPLA
Sbjct: 1817 LMDEYLGGAEEDGLVCCSSESNASFDLNVAKILQAMMKRDHFSVAEKIALSKQSLIAPLA 1876
Query: 1261 AAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKY 1320
AAGMDSY RAYPF+VKLH L+ELEDFH+IL +DSFLEKSF FSKL+ NW+NRL++
Sbjct: 1877 AAGMDSYMRAYPFVVKLHFLRELEDFHSILGDDSFLEKSFDLDHQAFSKLVDNWDNRLRF 1936
Query: 1321 TQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA 1380
TQ SLWAREPLLAFRR+VFG S LGA+VGNCWLQY+KLCRLAGHYETA RAILEAQ+SGA
Sbjct: 1937 TQSSLWAREPLLAFRRLVFGVSSLGAQVGNCWLQYSKLCRLAGHYETANRAILEAQSSGA 1996
Query: 1381 PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSN 1440
PNVHMEKAKLLWSTRRSDGAIA LQQ+LLN PVEV+GS ISSITSLSL+PLNP P++
Sbjct: 1997 PNVHMEKAKLLWSTRRSDGAIAVLQQSLLNMPVEVLGSKTISSITSLSLLPLNPQPIVCE 2056
Query: 1441 TQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500
+Q +NE RDIAKTLLLYSRW HYTGQKQKEDVI+LY+RVRELQP WEKG+FY+AKYCD+V
Sbjct: 2057 SQAMNENRDIAKTLLLYSRWTHYTGQKQKEDVISLYTRVRELQPKWEKGFFYIAKYCDEV 2116
Query: 1501 -----------LVDARKRQEENSEIGP----------------SEKRWWFYVPDVLLFYA 1533
L DARKRQEENS++GP EK WW VP+VLLFYA
Sbjct: 2117 LGDARKRQEELLGDARKRQEENSKLGPRRVPSATIAVGSSNLNGEKPWWSDVPEVLLFYA 2176
Query: 1534 KGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAY 1593
KGLHRGHKNLFQALPRLLTLWFDFGS+ Q +G SSNKDLK+V+ KVMSI+RGCLK+LP Y
Sbjct: 2177 KGLHRGHKNLFQALPRLLTLWFDFGSMYQSSG-SSNKDLKDVHAKVMSIVRGCLKELPPY 2235
Query: 1594 QWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAE 1653
WLTVLPQLVSRICHQNEEIVRLVK IITSVLRQYPQQGLWIMAAVSKST+PSRREAAAE
Sbjct: 2236 HWLTVLPQLVSRICHQNEEIVRLVKLIITSVLRQYPQQGLWIMAAVSKSTVPSRREAAAE 2295
Query: 1654 IIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLG 1713
IIQAA+KG + G+ N+LF QFT+LIDHLIKLCFHAGQS+++TIN+STEFS+LKRMMPLG
Sbjct: 2296 IIQAARKGFSPGSKENSLFVQFTTLIDHLIKLCFHAGQSRAKTINLSTEFSSLKRMMPLG 2355
Query: 1714 IIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLG 1773
IIMPIQQSLTV LP D NL +S S+IFS++DLPTISGIADEAEILSSLQRPKKI+LLG
Sbjct: 2356 IIMPIQQSLTVNLPTYDGNLGDSRMSNIFSSTDLPTISGIADEAEILSSLQRPKKIILLG 2415
Query: 1774 SDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM 1833
SDG++ PFLCKPKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM
Sbjct: 2416 SDGLEHPFLCKPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM 2475
Query: 1834 VEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPP 1893
VEWVPHTRGLR ILQDIYI+CGKFDRQKTNP IK+IYDQ QGK PEDEMLK KILPMFPP
Sbjct: 2476 VEWVPHTRGLRQILQDIYITCGKFDRQKTNPLIKQIYDQCQGKRPEDEMLKNKILPMFPP 2535
Query: 1894 VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVD 1953
VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVD
Sbjct: 2536 VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVD 2595
Query: 1954 FSCLFDKGLLLEKPELVPFRLTQ 1976
FSCLFDKGL LEKPELVPFRLTQ
Sbjct: 2596 FSCLFDKGLQLEKPELVPFRLTQ 2618
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454243|ref|XP_004144865.1| PREDICTED: serine/threonine-protein kinase ATR-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3006 bits (7794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1484/1996 (74%), Positives = 1696/1996 (84%), Gaps = 32/1996 (1%)
Query: 3 ESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVF 62
E+D EILDL+L DE DEVR EA IS+PVI +W+G LT +F+RLE L ++ EKVK++
Sbjct: 611 ETDLEILDLSLVDENDEVRTEAAISIPVIALWTGFDRLTPLFRRLEILKEEMHEKVKKII 670
Query: 63 PISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQ 122
P+S GFLSCL G+C S+ + CKL LN D QTV+Y+L+ FWCSKCD V+H+
Sbjct: 671 PVSLGFLSCLYGSCHSV-----SRCKLFLNTNSDRCCQTVNYVLQGFWCSKCDRTVLHDH 725
Query: 123 ELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD 182
+L + I+ SD K +N SDF L++++F+ L+DESSEEVQLSCV +RRILVHG+RD
Sbjct: 726 KLYANIIEQSDFYPK-MNLDSDFVHLVSMFFKLLFDESSEEVQLSCVGTLRRILVHGSRD 784
Query: 183 VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLL 242
VL +T+++W+KC+EFLLLN++K+IR+AFC QI FL+D + S F +E+ S++ EL L
Sbjct: 785 VLHQTKTDWLKCVEFLLLNRKKSIREAFCLQISSFLEDHITSCFFSEEDISNKRKELMFL 844
Query: 243 DVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNAS 302
D IK A + DP IL+T+LES AELM AVD+HS F L+LLV+ LDNP++ VR++AS
Sbjct: 845 DFIKTAMVSTADPQILDTILESVAELMNAVDIHSDFFSLSLLLLVDHLDNPYIAVRLSAS 904
Query: 303 RLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELV 362
R I ++C FH KG ++ SK + + NELFD++S RL + P +V+EFAEA GVETE V
Sbjct: 905 RAIHRACCFHFKGNFNMIFSKVIHLRNELFDHVSSRLVNHPKIVQEFAEAVLGVETEVFV 964
Query: 363 KKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRL 422
KKMIP VLPKL+VS Q+NDQAV + ELAKC++TDMV LIV W+PKVLAF L+QA+ + L
Sbjct: 965 KKMIPVVLPKLIVSHQNNDQAVESLYELAKCVDTDMVTLIVNWLPKVLAFVLYQANGKEL 1024
Query: 423 LSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVL 482
SALEFY QTGS +EIFAAALPALLDEL+CFVDGG+SDE+++RL RVP +I +V+ VL
Sbjct: 1025 CSALEFYHAQTGSTQEEIFAAALPALLDELVCFVDGGNSDEVSKRLARVPEMILQVARVL 1084
Query: 483 TGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKIL 542
TG +DLPGFLRNHFVGLLNS+DRKMLHAED+ LQKQAL+RIE+LI+++GSHL+TYVPK++
Sbjct: 1085 TGGDDLPGFLRNHFVGLLNSLDRKMLHAEDVCLQKQALQRIEMLIKLMGSHLSTYVPKLM 1144
Query: 543 VLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVL 602
VLLMHAI KE LQ EGL VL+ FI+QL+ VSPSS K+VISQVFAAL+PFLERD+ S
Sbjct: 1145 VLLMHAIGKEELQSEGLIVLNSFIQQLAMVSPSSIKYVISQVFAALVPFLERDET--STH 1202
Query: 603 LNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVD 662
L+ VVKILE+LVLKN++ILK HI EFP LP I+ALTEVN+AI E RG MTLKDQL VD
Sbjct: 1203 LDMVVKILEELVLKNKSILKVHIREFPPLPCISALTEVNRAINETRGSMTLKDQLRNVVD 1262
Query: 663 GLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRT 722
GLNHENL VRYMV CEL KLL ++S++VT LI+ EA D+DVLS LISSLLRGCAEESRT
Sbjct: 1263 GLNHENLKVRYMVACELRKLLNMRSKEVTTLISAEADLDMDVLSLLISSLLRGCAEESRT 1322
Query: 723 VVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPD 782
VGQ+LKL+CADC+GALGAVDPAKVK FSC+RFKIECSDDDLIFELI KHLARAF AAPD
Sbjct: 1323 AVGQRLKLICADCIGALGAVDPAKVKSFSCERFKIECSDDDLIFELIHKHLARAFGAAPD 1382
Query: 783 TIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNM 842
TIIQDSAALAIQELLKIAGC+ASLD+N S LKDKE VAS + SD+ H M++
Sbjct: 1383 TIIQDSAALAIQELLKIAGCKASLDDNTAPSASPSLKDKETSKTVASDS--SDDDHAMSI 1440
Query: 843 RGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVH 902
RG++ W RFS YVKEIIAPCLTSRFQLP+ DS IY P MSFRRWIY+WIRKLT H
Sbjct: 1441 RGQRLWGRFSDYVKEIIAPCLTSRFQLPNVVDSAFASSIYRPGMSFRRWIYFWIRKLTAH 1500
Query: 903 ATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASD 962
ATGSRA IF+ACRGIVRHDMQTA+YLLPYLVL+AVCHGTEEAR GI +EILSVL+AAA++
Sbjct: 1501 ATGSRAGIFHACRGIVRHDMQTAVYLLPYLVLSAVCHGTEEARHGITEEILSVLNAAAAE 1560
Query: 963 HSGASVHG-ISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTS---KQQGSKSKHP 1018
+ A +HG GQS+VCIQA+FTLLDNLGQWVDDV++ L+LS+S S K +KSK
Sbjct: 1561 NGVALIHGNTGGQSDVCIQAVFTLLDNLGQWVDDVERGLSLSQSGQSSSSKHLVAKSKES 1620
Query: 1019 ASSMH--QDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNP 1076
+S++H Q+QLL QC+YVS LL AIPK TLARAS CQAYARSLMYFES+VR KSGSFNP
Sbjct: 1621 SSNVHVDQEQLLVQCRYVSQLLDAIPKTTLARASLSCQAYARSLMYFESYVRGKSGSFNP 1680
Query: 1077 AAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTS 1136
AAE+SG FEDED+S+LMEIYSFLDEPDGLSGLA L KSL LQD+LL NKK+GNWAEV T
Sbjct: 1681 AAERSGIFEDEDISYLMEIYSFLDEPDGLSGLACLRKSLRLQDQLLINKKAGNWAEVLTF 1740
Query: 1137 CEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196
CEQAL MEP SVQRHSDVLNCLLNMCHLQAMVTHVDGLI+RIPQYKKTWCMQGVQAAWRL
Sbjct: 1741 CEQALHMEPNSVQRHSDVLNCLLNMCHLQAMVTHVDGLITRIPQYKKTWCMQGVQAAWRL 1800
Query: 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLI 1256
GRWDLMDEYL GADEEGLLCSSSESNASFDMDVAKILQAMMKK+ FSVS+KI +SKQ LI
Sbjct: 1801 GRWDLMDEYLKGADEEGLLCSSSESNASFDMDVAKILQAMMKKNQFSVSEKIALSKQSLI 1860
Query: 1257 APLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWEN 1316
APLAAAGMDSY RAYPF+VKLHLL+ELEDFH +L NDSFLEKSF D +FS+++ NWEN
Sbjct: 1861 APLAAAGMDSYARAYPFVVKLHLLKELEDFHNLLFNDSFLEKSFHVDDQEFSEMIQNWEN 1920
Query: 1317 RLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQ 1376
RLK+TQ SLWAREPLL+FRR+VFGAS LGA+VGNCWLQYAKLCR AGHYETA RAILEAQ
Sbjct: 1921 RLKFTQSSLWAREPLLSFRRLVFGASSLGAQVGNCWLQYAKLCRSAGHYETANRAILEAQ 1980
Query: 1377 ASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436
AS APNVHMEKAKLLWSTRRSDGAI+ELQQ+LLN PVEV+GS A+SSITSLSLVP+NP P
Sbjct: 1981 ASRAPNVHMEKAKLLWSTRRSDGAISELQQSLLNMPVEVIGSAAMSSITSLSLVPMNPAP 2040
Query: 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496
++ +TQTLNE RDIAKTLLLYSRWIH TGQKQKEDVI LYSRV+ELQP WEKGYF+MA+Y
Sbjct: 2041 LICDTQTLNENRDIAKTLLLYSRWIHCTGQKQKEDVINLYSRVKELQPKWEKGYFFMARY 2100
Query: 1497 CDDVLVDARKRQEENSE------------IGP----SEKRWWFYVPDVLLFYAKGLHRGH 1540
CD++L DARKRQE++ E IGP +EK WW YVPDVLLFYAKGLHRGH
Sbjct: 2101 CDELLEDARKRQEDSFEQGSRKVSSSSTAIGPPNLNNEKPWWSYVPDVLLFYAKGLHRGH 2160
Query: 1541 KNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLP 1600
KNLFQALPRLLTLWFDFGSI QR GS SNK+LK+V+GKV+SIMRGCLKDLPAYQWL VLP
Sbjct: 2161 KNLFQALPRLLTLWFDFGSIYQRVGSPSNKELKSVHGKVLSIMRGCLKDLPAYQWLAVLP 2220
Query: 1601 QLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKK 1660
QLVSRICHQNEE VRLVK+II SV+RQYPQQ LWIMAAVSKST+PSRREAA EII +AKK
Sbjct: 2221 QLVSRICHQNEETVRLVKYIIASVVRQYPQQALWIMAAVSKSTVPSRREAAMEIIYSAKK 2280
Query: 1661 GSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQ 1720
+ G NNLF QF SLIDHLIKLCFH GQ +++ INISTEFS LKRMMPL IIMPIQQ
Sbjct: 2281 DFSQGKGGNNLFLQFASLIDHLIKLCFHPGQQRAKNINISTEFSTLKRMMPLEIIMPIQQ 2340
Query: 1721 SLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRP 1780
SL V LP D NLT+SPSSDIFS ++LPTISGIADEAEILSSLQRPKKI+LLGSDGI+RP
Sbjct: 2341 SLVVNLPTYDVNLTDSPSSDIFSGTELPTISGIADEAEILSSLQRPKKIILLGSDGIERP 2400
Query: 1781 FLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840
FLCKPKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT
Sbjct: 2401 FLCKPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 2460
Query: 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFL 1900
RGLR+ILQDIYI+CGKFDRQKTNPQ+KRIYDQ QGKIPE EMLKTKILP+FPPVFH+WFL
Sbjct: 2461 RGLRHILQDIYITCGKFDRQKTNPQVKRIYDQCQGKIPEGEMLKTKILPLFPPVFHRWFL 2520
Query: 1901 TTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK 1960
TFSEPAAWFRAR+AYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK
Sbjct: 2521 NTFSEPAAWFRARIAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK 2580
Query: 1961 GLLLEKPELVPFRLTQ 1976
GL LEKPELVPFRLTQ
Sbjct: 2581 GLQLEKPELVPFRLTQ 2596
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449513043|ref|XP_004164212.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase ATR-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3004 bits (7789), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1483/1996 (74%), Positives = 1695/1996 (84%), Gaps = 32/1996 (1%)
Query: 3 ESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVF 62
E+D EILDL+L DE DEVR EA IS+PVI +W+G LT +F+RLE L ++ EKVK++
Sbjct: 611 ETDLEILDLSLVDENDEVRTEAAISIPVIALWTGFDRLTPLFRRLEILKEEMHEKVKKII 670
Query: 63 PISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQ 122
P+S GFLSCL G+C S+ + CKL LN D QTV+Y+L+ FWCSKCD V+H+
Sbjct: 671 PVSLGFLSCLYGSCHSV-----SRCKLFLNTNSDRCCQTVNYVLQGFWCSKCDRTVLHDH 725
Query: 123 ELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD 182
+L + I+ SD K +N SDF L++++F+ L+DESSEEVQLSCV +RRILVHG+RD
Sbjct: 726 KLYANIIEQSDFYPK-MNLDSDFVHLVSMFFKLLFDESSEEVQLSCVGTLRRILVHGSRD 784
Query: 183 VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLL 242
VL +T+++W+KC+EFLLLN++K+IR+AFC QI FL+D + S F +E+ S++ EL L
Sbjct: 785 VLHQTKTDWLKCVEFLLLNRKKSIREAFCLQISSFLEDHITSCFFSEEDISNKRKELMFL 844
Query: 243 DVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNAS 302
D IK A + DP IL+T+LES AELM AVD+HS F L+LLV+ LDNP++ VR++AS
Sbjct: 845 DFIKTAMVSTADPQILDTILESVAELMNAVDIHSDFFSLSLLLLVDHLDNPYIAVRLSAS 904
Query: 303 RLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELV 362
R I ++C FH KG ++ SK + + NELFD++S RL + P +V+EFAEA GVETE V
Sbjct: 905 RAIHRACCFHFKGNFNMIFSKVIHLRNELFDHVSSRLVNHPKIVQEFAEAVLGVETEVFV 964
Query: 363 KKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRL 422
KKMIP VLPKL+VS Q+NDQAV + ELAKC++TDMV LIV W+PKVLAF L+QA+ + L
Sbjct: 965 KKMIPVVLPKLIVSHQNNDQAVESLYELAKCVDTDMVTLIVNWLPKVLAFVLYQANGKEL 1024
Query: 423 LSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVL 482
SALEFY QTGS +EIFAAALPALLDEL+CFVDGG+SDE+++RL RVP +I +V+ VL
Sbjct: 1025 CSALEFYHAQTGSTQEEIFAAALPALLDELVCFVDGGNSDEVSKRLARVPEMILQVARVL 1084
Query: 483 TGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKIL 542
TG +DLPGFLRNHFVGLLNS+DRKMLHAED+ LQKQAL+RIE+LI+++GSHL+TYVPK++
Sbjct: 1085 TGGDDLPGFLRNHFVGLLNSLDRKMLHAEDVCLQKQALQRIEMLIKLMGSHLSTYVPKLM 1144
Query: 543 VLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVL 602
VLLMHAI KE LQ EGL VL+ FI+QL+ VSPSS K+VISQVFAAL+PFLERD+ S
Sbjct: 1145 VLLMHAIGKEELQSEGLIVLNSFIQQLAMVSPSSIKYVISQVFAALVPFLERDET--STH 1202
Query: 603 LNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVD 662
L+ VVKILE+LVLKN++ILK HI EFP LP I+ALTEVN+AI E RG MTLKDQL VD
Sbjct: 1203 LDMVVKILEELVLKNKSILKVHIREFPPLPCISALTEVNRAINETRGSMTLKDQLRNVVD 1262
Query: 663 GLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRT 722
GLNHENL VRYMV CEL KLL ++S++VT LI+ EA D+DVLS LISSLLRGCAEESRT
Sbjct: 1263 GLNHENLKVRYMVACELRKLLNMRSKEVTTLISAEADLDMDVLSLLISSLLRGCAEESRT 1322
Query: 723 VVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPD 782
VGQ+LKL+CADC+GALGAVDPAKVK FSC+RFKIECSDDDLIFELI KHLARAF AAPD
Sbjct: 1323 AVGQRLKLICADCIGALGAVDPAKVKSFSCERFKIECSDDDLIFELIHKHLARAFGAAPD 1382
Query: 783 TIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNM 842
TIIQDSAALAIQELLKIAGC+ASLD+N S LKDKE VAS + SD+ H M++
Sbjct: 1383 TIIQDSAALAIQELLKIAGCKASLDDNTAPSASPSLKDKETSKTVASDS--SDDDHAMSI 1440
Query: 843 RGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVH 902
RG++ W RFS YVKEIIAPCLTSRFQLP+ DS IY P MSFRRWIY+WIRKLT H
Sbjct: 1441 RGQRLWGRFSDYVKEIIAPCLTSRFQLPNVVDSAFASSIYRPGMSFRRWIYFWIRKLTAH 1500
Query: 903 ATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASD 962
ATGSRA IF+ACRGIVRHDMQTA+YLLPYLVL+AVCHGTEEAR GI +EILSVL+AAA++
Sbjct: 1501 ATGSRAGIFHACRGIVRHDMQTAVYLLPYLVLSAVCHGTEEARHGITEEILSVLNAAAAE 1560
Query: 963 HSGASVHG-ISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTS---KQQGSKSKHP 1018
+ A +HG GQS+VCIQA+FTLLDNLGQWVDDV++ L+LS+S S K +KSK
Sbjct: 1561 NGVALIHGNTGGQSDVCIQAVFTLLDNLGQWVDDVERGLSLSQSGQSSSSKHLVAKSKES 1620
Query: 1019 ASSMH--QDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNP 1076
+S++H Q+QLL QC+YVS LL AIPK TLARAS CQAYARSLMYFES+VR KSGSFNP
Sbjct: 1621 SSNVHVDQEQLLVQCRYVSQLLDAIPKTTLARASLSCQAYARSLMYFESYVRGKSGSFNP 1680
Query: 1077 AAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTS 1136
AAE+SG FEDED+S+LMEIYSFLDEPDGLSGLA L KSL LQD+LL NKK+GNWAEV T
Sbjct: 1681 AAERSGIFEDEDISYLMEIYSFLDEPDGLSGLACLRKSLRLQDQLLINKKAGNWAEVLTF 1740
Query: 1137 CEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196
CEQAL MEP SVQRHSDVLNCLLNMCHLQAMVTHVDGLI+RIPQYKKTWCMQGVQAAWRL
Sbjct: 1741 CEQALHMEPNSVQRHSDVLNCLLNMCHLQAMVTHVDGLITRIPQYKKTWCMQGVQAAWRL 1800
Query: 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLI 1256
GRWDLMDEYL GADEEGLLCSSSESNASFDMDVAKILQAMMKK+ FSVS+KI +SKQ LI
Sbjct: 1801 GRWDLMDEYLKGADEEGLLCSSSESNASFDMDVAKILQAMMKKNQFSVSEKIALSKQSLI 1860
Query: 1257 APLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWEN 1316
APLAAAGMDSY RAYPF+VKLHLL+ELEDFH +L NDSFLEKSF D +FS+++ NWEN
Sbjct: 1861 APLAAAGMDSYARAYPFVVKLHLLKELEDFHNLLFNDSFLEKSFHVDDQEFSEMIQNWEN 1920
Query: 1317 RLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQ 1376
RLK+TQ SLWAREPLL+FRR+VFGAS LGA+VGNCWLQYAKLCR AGHYETA RAILEAQ
Sbjct: 1921 RLKFTQSSLWAREPLLSFRRLVFGASSLGAQVGNCWLQYAKLCRSAGHYETANRAILEAQ 1980
Query: 1377 ASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436
AS APNVHMEKAKLLWSTRRSDGAI+ELQQ+LLN PVEV+GS A+SSITSLSLVP+NP P
Sbjct: 1981 ASRAPNVHMEKAKLLWSTRRSDGAISELQQSLLNMPVEVIGSAAMSSITSLSLVPMNPAP 2040
Query: 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496
++ +TQTLNE RDIAKTLLLYSRWIH TGQKQKEDVI LYSRV+ELQP WEKGYF+MA+Y
Sbjct: 2041 LICDTQTLNENRDIAKTLLLYSRWIHCTGQKQKEDVINLYSRVKELQPKWEKGYFFMARY 2100
Query: 1497 CDDVLVDARKRQEENSE------------IGP----SEKRWWFYVPDVLLFYAKGLHRGH 1540
CD++L DARKRQE++ E IGP +EK WW YVPDVLLFYAKGLHRGH
Sbjct: 2101 CDELLEDARKRQEDSFEQGSRKVSSSSTAIGPPNLNNEKPWWSYVPDVLLFYAKGLHRGH 2160
Query: 1541 KNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLP 1600
KNLFQALPRLLTLWFDFGSI QR GS SNK+LK+V+GKV+SIMRGCLKDLPAYQWL VLP
Sbjct: 2161 KNLFQALPRLLTLWFDFGSIYQRVGSPSNKELKSVHGKVLSIMRGCLKDLPAYQWLAVLP 2220
Query: 1601 QLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKK 1660
QLVSRICHQNEE VRLVK+II SV+RQYPQQ LWIMAAV KST+PSRREAA EII +AKK
Sbjct: 2221 QLVSRICHQNEETVRLVKYIIASVVRQYPQQALWIMAAVXKSTVPSRREAAMEIIYSAKK 2280
Query: 1661 GSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQ 1720
+ G NNLF QF SLIDHLIKLCFH GQ +++ INISTEFS LKRMMPL IIMPIQQ
Sbjct: 2281 XFSQGKGGNNLFLQFASLIDHLIKLCFHPGQQRAKNINISTEFSTLKRMMPLEIIMPIQQ 2340
Query: 1721 SLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRP 1780
SL V LP D NLT+SPSSDIFS ++LPTISGIADEAEILSSLQRPKKI+LLGSDGI+RP
Sbjct: 2341 SLVVNLPTYDVNLTDSPSSDIFSGTELPTISGIADEAEILSSLQRPKKIILLGSDGIERP 2400
Query: 1781 FLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840
FLCKPKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT
Sbjct: 2401 FLCKPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 2460
Query: 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFL 1900
RGLR+ILQDIYI+CGKFDRQKTNPQ+KRIYDQ QGKIPE EMLKTKILP+FPPVFH+WFL
Sbjct: 2461 RGLRHILQDIYITCGKFDRQKTNPQVKRIYDQCQGKIPEGEMLKTKILPLFPPVFHRWFL 2520
Query: 1901 TTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK 1960
TFSEPAAWFRAR+AYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK
Sbjct: 2521 NTFSEPAAWFRARIAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK 2580
Query: 1961 GLLLEKPELVPFRLTQ 1976
GL LEKPELVPFRLTQ
Sbjct: 2581 GLQLEKPELVPFRLTQ 2596
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297801500|ref|XP_002868634.1| hypothetical protein ARALYDRAFT_916145 [Arabidopsis lyrata subsp. lyrata] gi|297314470|gb|EFH44893.1| hypothetical protein ARALYDRAFT_916145 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2800 bits (7257), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1385/1992 (69%), Positives = 1631/1992 (81%), Gaps = 29/1992 (1%)
Query: 4 SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFP 63
SD +I +L D+F++V+A A I +P+ V++SGL L ++F +LE L +++ VK+ P
Sbjct: 613 SDFDIFSWSLSDDFEQVQAVAAIYMPLKVLFSGLRALLHMFPKLEHLLEEKQLMVKKTIP 672
Query: 64 ISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQE 123
S GFLSCL G SS +K AC L L+ ED +T++ LL+ F CSKCD + E
Sbjct: 673 QSLGFLSCLYG--SSTTGSEKTACHLFLH-EDLKKDETLNSLLQGFRCSKCDKFIESEDE 729
Query: 124 LSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+I+ ++ +++ H D+ L ++YF LYDESSEE QL+CV VIRRIL H D+
Sbjct: 730 KHFRIIETPEMVRLEMDHHRDYFNLQSLYFNLLYDESSEETQLACVEVIRRILGHTAPDI 789
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
L++TRS+WI+C+E+LL++ +R+AFC Q+G F+Q ++S LFL E+A+ +S E +
Sbjct: 790 LVRTRSQWIRCLEYLLVHVNTGVREAFCAQVGIFVQHPIVSCLFLGEDATEKSCERNFFN 849
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303
+I+ + A D L+++TLLE+ AE+M+AVDV S+ FLF L LL++QLD+P++ VR+NASR
Sbjct: 850 LIEHSLATAKDLLVIQTLLETIAEVMVAVDVTSELFLFCLFLLIDQLDHPNLIVRINASR 909
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI +SC+ H+KGG L+S+A I NELFD LSVRL +RP +VREFAEA GVETEELV+
Sbjct: 910 LINRSCYIHVKGGFATLLSRAGHIKNELFDNLSVRLTNRPNVVREFAEAVLGVETEELVR 969
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KM+P VLPKL+V Q+N QA N +NELAK L+TD+VPLIV W+P+VLAFAL+Q +++ +L
Sbjct: 970 KMVPVVLPKLLVYWQENAQAANTLNELAKLLDTDVVPLIVNWLPRVLAFALNQKEDKNML 1029
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
S L+ Y Q GSDN+EIFAAALPALLDELICFVD D+ E + RL R+P I+K+S VLT
Sbjct: 1030 SVLQLYHSQIGSDNKEIFAAALPALLDELICFVDIADTPETDRRLQRLPDAIKKISKVLT 1089
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
EDLPGFL+NHFVGLLNSIDRKMLHA+D+ LQKQALKRI++LIEM+G +L+TYVPK++V
Sbjct: 1090 NAEDLPGFLQNHFVGLLNSIDRKMLHADDIFLQKQALKRIKLLIEMMGHYLSTYVPKLMV 1149
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLMHAI+K++LQ EGL VLHFF +L+ VSPSS K+VISQVFAALIPFLER+KD P V L
Sbjct: 1150 LLMHAIDKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQVFAALIPFLEREKDGPHVYL 1209
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
++VVKILE+LVLKNR I+KQHI EFPLLPSI +L ++N AIQEARG M+LKDQL V+G
Sbjct: 1210 DEVVKILEELVLKNRDIVKQHICEFPLLPSIPSLGKLNNAIQEARGLMSLKDQLRDIVNG 1269
Query: 664 LNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
+ HENLNVRYMV CELSKLL ++EDV ALI GE SD+++LS+LI+ LL+GCAEESRT
Sbjct: 1270 MKHENLNVRYMVACELSKLLYHRNEDVAALIAGELVSDMEILSSLITYLLQGCAEESRTT 1329
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGA+GA+DPAKV+ SC RFKI+CSDDDLIFELI KHLARAFRAA DT
Sbjct: 1330 VGQRLKLVCADCLGAIGAIDPAKVRVASCSRFKIQCSDDDLIFELIHKHLARAFRAAQDT 1389
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
IIQDSAALAIQELLKIAGCE SL NV VL +EH+ V SG+ +E+ R
Sbjct: 1390 IIQDSAALAIQELLKIAGCEPSLAGNV-----VVLTPQEHVQVNVSGSRRCGGNNEVKDR 1444
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKE+IAPCLTSRFQLP+ SD S GPIY P MSFRRW+ YWIRKLT A
Sbjct: 1445 GQKLWDRFSNYVKELIAPCLTSRFQLPNVSDPGSAGPIYRPCMSFRRWLSYWIRKLTALA 1504
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSR SIF ACRGIVRHDMQTA YLLPYLVL+ VCHGTE ARL I++EILSVLDAAAS++
Sbjct: 1505 TGSRVSIFAACRGIVRHDMQTATYLLPYLVLDVVCHGTEAARLSISEEILSVLDAAASEN 1564
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTS---KQQGSKSKHPA 1019
SG +++ GQSEVC+QA+FTLLDNLGQWVDDVKQ +ALS S+ S +Q KSK
Sbjct: 1565 SGVTINSFGVGQSEVCVQAVFTLLDNLGQWVDDVKQGVALSSSMQSSGGRQVAPKSKDQV 1624
Query: 1020 S--SMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPA 1077
S + QD LL QC+YV LL A+PKVTLARASFRCQAYARSLMY ESHVR KSGS NPA
Sbjct: 1625 STATTEQDHLLVQCKYVLELLLAVPKVTLARASFRCQAYARSLMYLESHVRGKSGSLNPA 1684
Query: 1078 AEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSC 1137
AEK+G FE DVS LM IYS LDEPDGLSG A L KSL+LQD+LL +KKSGNWAEVFT+C
Sbjct: 1685 AEKTGIFESADVSSLMGIYSCLDEPDGLSGFASLSKSLNLQDQLLIDKKSGNWAEVFTAC 1744
Query: 1138 EQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197
EQALQMEPTSVQRHSDVLNCLLNMCH Q MVTHVDGLISR+P+YKKTWC QGVQAAWRLG
Sbjct: 1745 EQALQMEPTSVQRHSDVLNCLLNMCHHQTMVTHVDGLISRVPEYKKTWCTQGVQAAWRLG 1804
Query: 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIA 1257
+WDLMDEYL GADEEGLL SSS+SNASFD DVAKILQAMMKKD +SV+++I +SKQ LIA
Sbjct: 1805 KWDLMDEYLDGADEEGLLFSSSDSNASFDRDVAKILQAMMKKDQYSVAERIAISKQALIA 1864
Query: 1258 PLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENR 1317
PLAAAGMDSYTRAYPF+VKLHLL+ELEDF A+L DS+LEKSF SD FSK + NWENR
Sbjct: 1865 PLAAAGMDSYTRAYPFVVKLHLLRELEDFQAVLNGDSYLEKSFSTSDQVFSKAVDNWENR 1924
Query: 1318 LKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA 1377
L++TQ SLW REPLLAFRR+VFGASGLGA+VGNCWLQYAKLCRLAGHYETA RAILEAQA
Sbjct: 1925 LRFTQSSLWTREPLLAFRRLVFGASGLGAQVGNCWLQYAKLCRLAGHYETAHRAILEAQA 1984
Query: 1378 SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437
SGAPNVHMEKAKLLW T+RSD AI ELQQ+LLN P VV ST ISSI SL + P NP P
Sbjct: 1985 SGAPNVHMEKAKLLWITKRSDSAIIELQQSLLNMPEGVVDSTVISSINSLLMAPPNPEPT 2044
Query: 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497
+ NTQ+ EK+D+AKTLLLYS+WIH++GQKQK+DV+ LY++V+EL P WEKGYF++AKY
Sbjct: 2045 VRNTQSFKEKKDVAKTLLLYSKWIHHSGQKQKKDVLNLYTQVKELLP-WEKGYFHLAKYY 2103
Query: 1498 DDVLVDARKRQEENSEIG-------------PSEKRWWFYVPDVLLFYAKGLHRGHKNLF 1544
D++ VDARK ++E+S + +EK W Y+ + FYAK LH GHKNLF
Sbjct: 2104 DELYVDARKCEQESSVLSSAGSKKGSVSSNLSTEKAGWDYLFKGMYFYAKALHSGHKNLF 2163
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVS 1604
QALPRLLTLWFDFG+I + +GS NK+LK+ + K+MS+MRGCLKDLP YQWLTVLPQLVS
Sbjct: 2164 QALPRLLTLWFDFGTIYKTSGSVGNKELKSTHMKIMSLMRGCLKDLPTYQWLTVLPQLVS 2223
Query: 1605 RICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAH 1664
RICHQN + V +VK+IITSVL Q+PQQGLWIMAAVSKST+P+RREAAAEIIQ A+KG
Sbjct: 2224 RICHQNGDTVLMVKNIITSVLHQFPQQGLWIMAAVSKSTVPARREAAAEIIQGARKGFNQ 2283
Query: 1665 GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTV 1724
+ +NLF QF S+ DH IKLCFH GQ +S+ INI+TEFSALKRMMPL IIMPIQQSLT+
Sbjct: 2284 SDRGHNLFIQFASVTDHFIKLCFHGGQPRSKVINIATEFSALKRMMPLDIIMPIQQSLTI 2343
Query: 1725 TLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK 1784
+LP D N E S+ +FS SDLPTISGIADEAEILSSLQRPKKI+LLG+DGI+ PFLCK
Sbjct: 2344 SLPAFDMNNNEGHSASVFSGSDLPTISGIADEAEILSSLQRPKKIILLGNDGIEYPFLCK 2403
Query: 1785 PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR 1844
PKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAV PLTEDCG+VEWVPHTRGLR
Sbjct: 2404 PKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVAPLTEDCGLVEWVPHTRGLR 2463
Query: 1845 NILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFS 1904
+ILQDIYISCG+FDRQKTNPQIKRIYDQ K E EMLKTKILPMFPPVFHKWFLTTFS
Sbjct: 2464 HILQDIYISCGRFDRQKTNPQIKRIYDQCAVK-KEYEMLKTKILPMFPPVFHKWFLTTFS 2522
Query: 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL 1964
EPAAWFR+RVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVDFSCLFDKGL L
Sbjct: 2523 EPAAWFRSRVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVDFSCLFDKGLQL 2582
Query: 1965 EKPELVPFRLTQ 1976
EKPELVPFRLTQ
Sbjct: 2583 EKPELVPFRLTQ 2594
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18422029|ref|NP_198898.2| serine/threonine-protein kinase ATR [Arabidopsis thaliana] gi|55976592|sp|Q9FKS4.2|ATR_ARATH RecName: Full=Serine/threonine-protein kinase ATR; Short=AtATR; AltName: Full=Ataxia telangiectasia-mutated and Rad3-related homolog; AltName: Full=DNA repair protein ATR; AltName: Full=Rad3-like protein; Short=AtRAD3 gi|332007216|gb|AED94599.1| serine/threonine-protein kinase ATR [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2792 bits (7238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1386/1992 (69%), Positives = 1630/1992 (81%), Gaps = 29/1992 (1%)
Query: 4 SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFP 63
SD +I +L D+F++V+A A IS+P+ V++SGLG L ++F +LE L +++ +K+ P
Sbjct: 607 SDFDIFSWSLSDDFEQVQAVAAISMPLKVLFSGLGALLHMFPKLEHLLEEKELMIKKAIP 666
Query: 64 ISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQE 123
S GFLSCL G SS D +K AC LLL+ ED +T++ LL+ F CSKCD + E
Sbjct: 667 QSLGFLSCLYG--SSTTDSEKTACHLLLH-EDLKKDETLNSLLQGFRCSKCDKFIEREDE 723
Query: 124 LSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+I+ ++ ++ H D+ L ++YF LYDESSEE QL+CV VIRRIL H + D+
Sbjct: 724 KHFRIIETPEMVKLKMDHHRDYFNLQSLYFNLLYDESSEETQLACVEVIRRILGHTSPDI 783
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
L++TRS+WI+C+++LL++ +R+AFC QIG F+Q ++S LFL E+A+ +S E +
Sbjct: 784 LVRTRSQWIRCLQYLLVHVNTDVREAFCAQIGIFVQHPIVSCLFLSEDATEKSCERNFFN 843
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303
+I+ + AA D L+++TLLE+TAE+M+AVDV S+ FL L LL++QLD+P++ VR+NAS+
Sbjct: 844 LIEHSLAAAKDLLVIQTLLETTAEVMVAVDVTSELFLICLFLLIDQLDHPNLIVRINASK 903
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI +SC+ H+KGG L+S A I NELFD LSVRL SRP +VREFAEA GVETEELV+
Sbjct: 904 LINRSCYIHVKGGFATLLSTASHIQNELFDNLSVRLTSRPNVVREFAEAVLGVETEELVR 963
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KM+PAVLPKL+V Q+N QA N +NELAK ++TD+VPLIV W+P+VLAFAL+Q +++ LL
Sbjct: 964 KMVPAVLPKLLVYWQENAQAANTLNELAKLIDTDVVPLIVNWLPRVLAFALNQEEDKNLL 1023
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
S L+ Y Q GSDNQEIFAAALPALLDEL+CFVD D+ E + RL R+P I+K+S VLT
Sbjct: 1024 SVLQLYHSQIGSDNQEIFAAALPALLDELVCFVDIADTPETDRRLQRLPDAIKKISKVLT 1083
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
EDLPGFL+NHFVGLLNSIDRKMLHA+D+ LQKQALKRI++LIEM+G +L+TYVPK++V
Sbjct: 1084 NAEDLPGFLQNHFVGLLNSIDRKMLHADDIFLQKQALKRIKLLIEMMGHYLSTYVPKLMV 1143
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLMHAI K++LQ EGL VLHFF +L+ VSPSS K+VISQ+FAALIPFLE++K+ P V L
Sbjct: 1144 LLMHAIEKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQIFAALIPFLEKEKEGPHVYL 1203
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
++VVKILE+LVLKNR I+K+HI EFPLLPSI +L E+N AIQEARG M+LKDQL V+G
Sbjct: 1204 DEVVKILEELVLKNRDIVKEHICEFPLLPSIPSLGELNNAIQEARGLMSLKDQLRDIVNG 1263
Query: 664 LNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
+ HENLNVRYMV CELSKLL ++EDV ALI GE SD+++LS+LI+ LL+GCAEESRT
Sbjct: 1264 MKHENLNVRYMVACELSKLLYNRNEDVAALIAGELVSDMEILSSLITYLLQGCAEESRTT 1323
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGA+GA+DPAKV+ SC RFKI+CSDDDLIFELI KHLARAFRAA DT
Sbjct: 1324 VGQRLKLVCADCLGAIGAIDPAKVRVASCSRFKIQCSDDDLIFELIHKHLARAFRAAQDT 1383
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
IIQDSAALAIQELLKIAGCE SL NV VL +EH+ V SG+ +E+ R
Sbjct: 1384 IIQDSAALAIQELLKIAGCEPSLAGNV-----VVLTPQEHVQVNVSGSRRCGGNNEVKDR 1438
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKE+IAPCLTSRFQLP+ SD S GPIY PSMSFRRW+ YWIRKLT A
Sbjct: 1439 GQKLWDRFSNYVKELIAPCLTSRFQLPNVSDPGSAGPIYRPSMSFRRWLSYWIRKLTAFA 1498
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSR SIF ACRGIVRHDMQTA YLLPYLVL+ VCHGTE ARL I++EILSVLDAAAS++
Sbjct: 1499 TGSRVSIFAACRGIVRHDMQTATYLLPYLVLDVVCHGTEAARLSISEEILSVLDAAASEN 1558
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELA---LSESLTSKQQGSKSKHPA 1019
SG +++ GQSEVC+QA+FTLLDNLGQWVDDVKQ +A +S +Q KSK
Sbjct: 1559 SGVTINSFGVGQSEVCVQAVFTLLDNLGQWVDDVKQGVALSSSLQSSGGRQVAPKSKDQV 1618
Query: 1020 --SSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPA 1077
S+ QD LL QC+YV LL AIPKVTLARASFRCQAYARSLMY ESHVR KSGS NPA
Sbjct: 1619 SNSTTEQDHLLVQCKYVLELLLAIPKVTLARASFRCQAYARSLMYLESHVRGKSGSLNPA 1678
Query: 1078 AEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSC 1137
AEK+G FE+ DVS LM IYS LDEPDGLSG A L KSL+LQD+LL NKKSGNWA+VFT+C
Sbjct: 1679 AEKTGIFENADVSSLMGIYSCLDEPDGLSGFASLSKSLNLQDQLLINKKSGNWADVFTAC 1738
Query: 1138 EQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197
EQALQMEPTSVQRHSDVLNCLLNMCH Q MVTHVDGLISR+P+YKKTWC QGVQAAWRLG
Sbjct: 1739 EQALQMEPTSVQRHSDVLNCLLNMCHHQTMVTHVDGLISRVPEYKKTWCTQGVQAAWRLG 1798
Query: 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIA 1257
+WDLMDEYL GAD EGLL SSS+SNASFD DVAKIL AMMKKD +SV++ I +SKQ LIA
Sbjct: 1799 KWDLMDEYLDGADAEGLLFSSSDSNASFDRDVAKILHAMMKKDQYSVAEGIAISKQALIA 1858
Query: 1258 PLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENR 1317
PLAAAGMDSYTRAYPF+VKLHLL+ELEDF A+L DS+LEKSF SD FSK + NWENR
Sbjct: 1859 PLAAAGMDSYTRAYPFVVKLHLLRELEDFQAVLNGDSYLEKSFSTSDQVFSKAVDNWENR 1918
Query: 1318 LKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA 1377
L++TQ SLW REPLLAFRR+VFGASGLGA+VGNCWLQYAKLCRLAGHYETA RAILEAQA
Sbjct: 1919 LRFTQSSLWTREPLLAFRRLVFGASGLGAQVGNCWLQYAKLCRLAGHYETAHRAILEAQA 1978
Query: 1378 SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437
SGAPNVHMEKAKLLW T+RSD AI ELQQ+LLN P VV ST ISSI SL + P NP P
Sbjct: 1979 SGAPNVHMEKAKLLWITKRSDSAIIELQQSLLNMPEGVVDSTVISSINSLLMAPPNPEPT 2038
Query: 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497
+ NTQ+ EK+D+AKTLLLYS+WIH++GQKQK+DV+ LY++V+EL P WEKGYF++AKY
Sbjct: 2039 VRNTQSFKEKKDVAKTLLLYSKWIHHSGQKQKKDVLNLYTQVKELLP-WEKGYFHLAKYY 2097
Query: 1498 DDVLVDARKRQEENSEIG-------------PSEKRWWFYVPDVLLFYAKGLHRGHKNLF 1544
D++ VDARK Q+E+S +EK W Y+ + FYAK LH GHKNLF
Sbjct: 2098 DELYVDARKCQQESSVFSSAGSKKGSVSSNLSTEKAGWDYLFKGMYFYAKALHSGHKNLF 2157
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVS 1604
QALPRLLTLWFDFG+I + +GS+ NK+LK+ + K+MS+MRGCLKDLP YQWLTVLPQLVS
Sbjct: 2158 QALPRLLTLWFDFGTIYKTSGSAGNKELKSTHMKIMSLMRGCLKDLPTYQWLTVLPQLVS 2217
Query: 1605 RICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAH 1664
RICHQN + V +VK+IITSVL Q+PQQGLWIMAAVSKST+P+RREAAAEIIQ A+KG
Sbjct: 2218 RICHQNADTVLMVKNIITSVLHQFPQQGLWIMAAVSKSTVPARREAAAEIIQGARKGFNQ 2277
Query: 1665 GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTV 1724
+ +NLF QF SL DH IKLCFH GQ +S+ INI+TEFSALKRMMPL IIMPIQQSLT+
Sbjct: 2278 SDRGHNLFIQFASLTDHFIKLCFHGGQPRSKVINIATEFSALKRMMPLDIIMPIQQSLTI 2337
Query: 1725 TLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK 1784
+LP N E S+ +FS SDLPTISGIADEAEILSSLQRPKKI+LLG+DGI+ PFLCK
Sbjct: 2338 SLPAFHMNNNERHSASVFSGSDLPTISGIADEAEILSSLQRPKKIILLGNDGIEYPFLCK 2397
Query: 1785 PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR 1844
PKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAV PLTEDCG+VEWVPHTRGLR
Sbjct: 2398 PKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVAPLTEDCGLVEWVPHTRGLR 2457
Query: 1845 NILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFS 1904
+ILQDIYISCGKFDRQKTNPQIKRIYDQ K E EMLKTKILPMFPPVFHKWFLTTFS
Sbjct: 2458 HILQDIYISCGKFDRQKTNPQIKRIYDQCAVK-KEYEMLKTKILPMFPPVFHKWFLTTFS 2516
Query: 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL 1964
EPAAWFR+RVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVDFSCLFDKGL L
Sbjct: 2517 EPAAWFRSRVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVDFSCLFDKGLQL 2576
Query: 1965 EKPELVPFRLTQ 1976
EKPELVPFRLTQ
Sbjct: 2577 EKPELVPFRLTQ 2588
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7288126|dbj|BAA92828.1| AtRAD3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2790 bits (7232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1386/1992 (69%), Positives = 1630/1992 (81%), Gaps = 29/1992 (1%)
Query: 4 SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFP 63
SD +I +L D+F++V+A A IS+P+ V++SGLG L ++F +LE L +++ +K+ P
Sbjct: 608 SDFDIFSWSLSDDFEQVQAVAAISMPLKVLFSGLGALLHMFPKLEHLLEEKELMIKKAIP 667
Query: 64 ISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQE 123
S GFLSCL G SS D +K AC LLL+ ED +T++ LL+ F CSKCD + E
Sbjct: 668 QSLGFLSCLYG--SSTTDSEKTACHLLLH-EDLKKDETLNSLLQGFRCSKCDKFIEREDE 724
Query: 124 LSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+I+ ++ ++ H D+ L ++YF LYDESSEE QL+CV VIRRIL H + D+
Sbjct: 725 KHFRIIETPEMVKLKMDHHRDYFNLQSLYFNLLYDESSEETQLACVEVIRRILGHTSPDI 784
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
L++TRS+WI+C+++LL++ +R+AFC QIG F+Q ++S LFL E+A+ +S E +
Sbjct: 785 LVRTRSQWIRCLQYLLVHVNTDVREAFCAQIGIFVQHPIVSCLFLSEDATEKSCERNFFN 844
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303
+I+ + AA D L+++TLLE+TAE+M+AVDV S+ FL L LL++QLD+P++ VR+NAS+
Sbjct: 845 LIEHSLAAAKDLLVIQTLLETTAEVMVAVDVTSELFLICLFLLIDQLDHPNLIVRINASK 904
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI +SC+ H+KGG L+S A I NELFD LSVRL SRP +VREFAEA GVETEELV+
Sbjct: 905 LINRSCYIHVKGGFATLLSTASHIQNELFDNLSVRLTSRPNVVREFAEAVLGVETEELVR 964
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KM+PAVLPKL+V Q+N QA N +NELAK ++TD+VPLIV W+P+VLAFAL+Q +++ LL
Sbjct: 965 KMVPAVLPKLLVYWQENAQAANTLNELAKLIDTDVVPLIVNWLPRVLAFALNQEEDKNLL 1024
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
S L+ Y Q GSDNQEIFAAALPALLDEL+CFVD D+ E + RL R+P I+K+S VLT
Sbjct: 1025 SVLQLYHSQIGSDNQEIFAAALPALLDELVCFVDIADTPETDRRLQRLPDAIKKISKVLT 1084
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
EDLPGFL+NHFVGLLNSIDRKMLHA+D+ LQKQALKRI++LIEM+G +L+TYVPK++V
Sbjct: 1085 NAEDLPGFLQNHFVGLLNSIDRKMLHADDIFLQKQALKRIKLLIEMMGHYLSTYVPKLMV 1144
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLMHAI K++LQ EGL VLHFF +L+ VSPSS K+VISQ+FAALIPFLE++K+ P V L
Sbjct: 1145 LLMHAIEKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQIFAALIPFLEKEKEGPHVYL 1204
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
++VVKILE+LVLKNR I+K+HI EFPLLPSI +L E+N AIQEARG M+LKDQL V+G
Sbjct: 1205 DEVVKILEELVLKNRDIVKEHICEFPLLPSIPSLGELNNAIQEARGLMSLKDQLRDIVNG 1264
Query: 664 LNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
+ HENLNVRYMV CELSKLL ++EDV ALI GE SD+++LS+LI+ LL+GCAEESRT
Sbjct: 1265 MKHENLNVRYMVACELSKLLYNRNEDVAALIAGELVSDMEILSSLITYLLQGCAEESRTT 1324
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGA+GA+DPAKV+ SC RFKI+CSDDDLIFELI KHLARAFRAA DT
Sbjct: 1325 VGQRLKLVCADCLGAIGAIDPAKVRVASCSRFKIQCSDDDLIFELIHKHLARAFRAAQDT 1384
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
IIQDSAALAIQELLKIAGCE SL NV VL +EH+ V SG+ +E+ R
Sbjct: 1385 IIQDSAALAIQELLKIAGCEPSLAGNV-----VVLTPQEHVQVNVSGSRRCGGNNEVKDR 1439
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKE+IAPCLTSRFQLP+ SD S GPIY PSMSFRRW+ YWIRKLT A
Sbjct: 1440 GQKLWDRFSNYVKELIAPCLTSRFQLPNVSDPGSAGPIYRPSMSFRRWLSYWIRKLTAFA 1499
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSR SIF ACRGIVRHDMQTA YLLPYLVL+ VCHGTE ARL I++EILSVLDAAAS++
Sbjct: 1500 TGSRVSIFAACRGIVRHDMQTATYLLPYLVLDVVCHGTEAARLSISEEILSVLDAAASEN 1559
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELA---LSESLTSKQQGSKSKHPA 1019
SG +++ GQSEVC+QA+FTLLDNLGQWVDDVKQ +A +S +Q KSK
Sbjct: 1560 SGVTINSFGVGQSEVCVQAVFTLLDNLGQWVDDVKQGVALSSSLQSSGGRQVAPKSKDQV 1619
Query: 1020 --SSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPA 1077
S+ QD LL QC+YV LL AIPKVTLARASFRCQAYARSLMY ESHVR KSGS NPA
Sbjct: 1620 SNSTTEQDHLLVQCKYVLELLLAIPKVTLARASFRCQAYARSLMYLESHVRGKSGSLNPA 1679
Query: 1078 AEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSC 1137
AEK+G FE+ DVS LM IYS LDEPDGLSG A L KSL+LQD+LL NKKSGNWA+VFT+C
Sbjct: 1680 AEKTGIFENADVSSLMGIYSCLDEPDGLSGFASLSKSLNLQDQLLINKKSGNWADVFTAC 1739
Query: 1138 EQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197
EQALQMEPTSVQRHSDVLNCLLNMCH Q MVTHVDGLISR+P+YKKTWC QGVQAAWRLG
Sbjct: 1740 EQALQMEPTSVQRHSDVLNCLLNMCHHQTMVTHVDGLISRVPEYKKTWCTQGVQAAWRLG 1799
Query: 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIA 1257
+WDLMDEYL GAD EGLL SSS+SNASFD DVAKIL AMMKKD +SV++ I +SKQ LIA
Sbjct: 1800 KWDLMDEYLDGADAEGLLFSSSDSNASFDRDVAKILHAMMKKDQYSVAEGIAISKQALIA 1859
Query: 1258 PLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENR 1317
PLAAAGMDSYTRAYPF+VKLHLL+ELEDF A+L DS+LEKSF SD FSK + NWENR
Sbjct: 1860 PLAAAGMDSYTRAYPFVVKLHLLRELEDFQAVLNGDSYLEKSFSTSDQVFSKAVDNWENR 1919
Query: 1318 LKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA 1377
L++TQ SLW REPLLAFRR+VFGASGLGA+VGNCWLQYAKLCRLAGHYETA RAILEAQA
Sbjct: 1920 LRFTQSSLWTREPLLAFRRLVFGASGLGAQVGNCWLQYAKLCRLAGHYETAHRAILEAQA 1979
Query: 1378 SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437
SGAPNVHMEKAKLLW T+RSD AI ELQQ+LLN P VV ST ISSI SL + P NP P
Sbjct: 1980 SGAPNVHMEKAKLLWITKRSDSAIIELQQSLLNMPEGVVDSTVISSINSLLMAPPNPEPT 2039
Query: 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497
+ NTQ+ EK+D+AKTLLLYS+WIH++GQKQK+DV+ LY++V+EL P WEKGYF++AKY
Sbjct: 2040 VRNTQSFKEKKDVAKTLLLYSKWIHHSGQKQKKDVLNLYTQVKELLP-WEKGYFHLAKYY 2098
Query: 1498 DDVLVDARKRQEENSEIG-------------PSEKRWWFYVPDVLLFYAKGLHRGHKNLF 1544
D++ VDARK Q+E+S +EK W Y+ + FYAK LH GHKNLF
Sbjct: 2099 DELYVDARKCQQESSVFSSAGSKKGSVSSNLSTEKAGWDYLFKGMYFYAKALHSGHKNLF 2158
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVS 1604
QALPRLLTLWFDFG+I + +GS+ NK+LK+ + K+MS+MRGCLKDLP YQWLTVLPQLVS
Sbjct: 2159 QALPRLLTLWFDFGTIYKTSGSAGNKELKSTHMKIMSLMRGCLKDLPTYQWLTVLPQLVS 2218
Query: 1605 RICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAH 1664
RICHQN + V +VK+IITSVL Q+PQQGLWIMAAVSKST+P+RREAAAEIIQ A+KG
Sbjct: 2219 RICHQNADTVLMVKNIITSVLHQFPQQGLWIMAAVSKSTVPARREAAAEIIQGARKGFNQ 2278
Query: 1665 GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTV 1724
+ +NLF QF SL DH IKLCFH GQ +S+ INI+TEFSALKRMMPL IIMPIQQSLT+
Sbjct: 2279 SDRGHNLFIQFASLTDHFIKLCFHGGQPRSKVINIATEFSALKRMMPLDIIMPIQQSLTI 2338
Query: 1725 TLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK 1784
+LP N E S+ +FS SDLPTISGIADEAEILSSLQRPKKI+LLG+DGI+ PFLCK
Sbjct: 2339 SLPAFHMNNNERHSASVFSGSDLPTISGIADEAEILSSLQRPKKIILLGNDGIEYPFLCK 2398
Query: 1785 PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR 1844
PKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAV PLTEDCG+VEWVPHTRGLR
Sbjct: 2399 PKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVAPLTEDCGLVEWVPHTRGLR 2458
Query: 1845 NILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFS 1904
+ILQDIYISCGKFDRQKTNPQIKRIYDQ K E EMLKTKILPMFPPVFHKWFLTTFS
Sbjct: 2459 HILQDIYISCGKFDRQKTNPQIKRIYDQCAVK-KEYEMLKTKILPMFPPVFHKWFLTTFS 2517
Query: 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL 1964
EPAAWFR+RVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVDFSCLFDKGL L
Sbjct: 2518 EPAAWFRSRVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVDFSCLFDKGLQL 2577
Query: 1965 EKPELVPFRLTQ 1976
EKPELVPFRLTQ
Sbjct: 2578 EKPELVPFRLTQ 2589
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|10177961|dbj|BAB11344.1| AtRAD3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2788 bits (7227), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1387/1993 (69%), Positives = 1630/1993 (81%), Gaps = 30/1993 (1%)
Query: 4 SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFP 63
SD +I +L D+F++V+A A IS+P+ V++SGLG L ++F +LE L +++ +K+ P
Sbjct: 607 SDFDIFSWSLSDDFEQVQAVAAISMPLKVLFSGLGALLHMFPKLEHLLEEKELMIKKAIP 666
Query: 64 ISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQE 123
S GFLSCL G SS D +K AC LLL+ ED +T++ LL+ F CSKCD + E
Sbjct: 667 QSLGFLSCLYG--SSTTDSEKTACHLLLH-EDLKKDETLNSLLQGFRCSKCDKFIEREDE 723
Query: 124 LSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+I+ ++ ++ H D+ L ++YF LYDESSEE QL+CV VIRRIL H + D+
Sbjct: 724 KHFRIIETPEMVKLKMDHHRDYFNLQSLYFNLLYDESSEETQLACVEVIRRILGHTSPDI 783
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
L++TRS+WI+C+++LL++ +R+AFC QIG F+Q ++S LFL E+A+ +S E +
Sbjct: 784 LVRTRSQWIRCLQYLLVHVNTDVREAFCAQIGIFVQHPIVSCLFLSEDATEKSCERNFFN 843
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303
+I+ + AA D L+++TLLE+TAE+M+AVDV S+ FL L LL++QLD+P++ VR+NAS+
Sbjct: 844 LIEHSLAAAKDLLVIQTLLETTAEVMVAVDVTSELFLICLFLLIDQLDHPNLIVRINASK 903
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI +SC+ H+KGG L+S A I NELFD LSVRL SRP +VREFAEA GVETEELV+
Sbjct: 904 LINRSCYIHVKGGFATLLSTASHIQNELFDNLSVRLTSRPNVVREFAEAVLGVETEELVR 963
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KM+PAVLPKL+V Q+N QA N +NELAK ++TD+VPLIV W+P+VLAFAL+Q +++ LL
Sbjct: 964 KMVPAVLPKLLVYWQENAQAANTLNELAKLIDTDVVPLIVNWLPRVLAFALNQEEDKNLL 1023
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
S L+ Y Q GSDNQEIFAAALPALLDEL+CFVD D+ E + RL R+P I+K+S VLT
Sbjct: 1024 SVLQLYHSQIGSDNQEIFAAALPALLDELVCFVDIADTPETDRRLQRLPDAIKKISKVLT 1083
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
EDLPGFL+NHFVGLLNSIDRKMLHA+D+ LQKQALKRI++LIEM+G +L+TYVPK++V
Sbjct: 1084 NAEDLPGFLQNHFVGLLNSIDRKMLHADDIFLQKQALKRIKLLIEMMGHYLSTYVPKLMV 1143
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLMHAI K++LQ EGL VLHFF +L+ VSPSS K+VISQ+FAALIPFLE++K+ P V L
Sbjct: 1144 LLMHAIEKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQIFAALIPFLEKEKEGPHVYL 1203
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
++VVKILE+LVLKNR I+K+HI EFPLLPSI +L E+N AIQEARG M+LKDQL V+G
Sbjct: 1204 DEVVKILEELVLKNRDIVKEHICEFPLLPSIPSLGELNNAIQEARGLMSLKDQLRDIVNG 1263
Query: 664 LNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
+ HENLNVRYMV CELSKLL ++EDV ALI GE SD+++LS+LI+ LL+GCAEESRT
Sbjct: 1264 MKHENLNVRYMVACELSKLLYNRNEDVAALIAGELVSDMEILSSLITYLLQGCAEESRTT 1323
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGA+GA+DPAKV+ SC RFKI+CSDDDLIFELI KHLARAFRAA DT
Sbjct: 1324 VGQRLKLVCADCLGAIGAIDPAKVRVASCSRFKIQCSDDDLIFELIHKHLARAFRAAQDT 1383
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
IIQDSAALAIQELLKIAGCE SL NV VL +EH+ V SG+ +E+ R
Sbjct: 1384 IIQDSAALAIQELLKIAGCEPSLAGNV-----VVLTPQEHVQVNVSGSRRCGGNNEVKDR 1438
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKE+IAPCLTSRFQLP+ SD S GPIY PSMSFRRW+ YWIRKLT A
Sbjct: 1439 GQKLWDRFSNYVKELIAPCLTSRFQLPNVSDPGSAGPIYRPSMSFRRWLSYWIRKLTAFA 1498
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSR SIF ACRGIVRHDMQTA YLLPYLVL+ VCHGTE ARL I++EILSVLDAAAS++
Sbjct: 1499 TGSRVSIFAACRGIVRHDMQTATYLLPYLVLDVVCHGTEAARLSISEEILSVLDAAASEN 1558
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELA---LSESLTSKQQGSKSKHPA 1019
SG +++ GQSEVC+QA+FTLLDNLGQWVDDVKQ +A +S +Q KSK
Sbjct: 1559 SGVTINSFGVGQSEVCVQAVFTLLDNLGQWVDDVKQGVALSSSLQSSGGRQVAPKSKDQV 1618
Query: 1020 --SSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPA 1077
S+ QD LL QC+YV LL AIPKVTLARASFRCQAYARSLMY ESHVR KSGS NPA
Sbjct: 1619 SNSTTEQDHLLVQCKYVLELLLAIPKVTLARASFRCQAYARSLMYLESHVRGKSGSLNPA 1678
Query: 1078 AEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSC 1137
AEK+G FE+ DVS LM IYS LDEPDGLSG A L KSL+LQD+LL NKKSGNWA+VFT+C
Sbjct: 1679 AEKTGIFENADVSSLMGIYSCLDEPDGLSGFASLSKSLNLQDQLLINKKSGNWADVFTAC 1738
Query: 1138 EQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197
EQALQMEPTSVQRHSDVLNCLLNMCH Q MVTHVDGLISR+P+YKKTWC QGVQAAWRLG
Sbjct: 1739 EQALQMEPTSVQRHSDVLNCLLNMCHHQTMVTHVDGLISRVPEYKKTWCTQGVQAAWRLG 1798
Query: 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIA 1257
+WDLMDEYL GAD EGLL SSS+SNASFD DVAKIL AMMKKD +SV++ I +SKQ LIA
Sbjct: 1799 KWDLMDEYLDGADAEGLLFSSSDSNASFDRDVAKILHAMMKKDQYSVAEGIAISKQALIA 1858
Query: 1258 PLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENR 1317
PLAAAGMDSYTRAYPF+VKLHLL+ELEDF A+L DS+LEKSF SD FSK + NWENR
Sbjct: 1859 PLAAAGMDSYTRAYPFVVKLHLLRELEDFQAVLNGDSYLEKSFSTSDQVFSKAVDNWENR 1918
Query: 1318 LKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA 1377
L++TQ SLW REPLLAFRR+VFGASGLGA+VGNCWLQYAKLCRLAGHYETA RAILEAQA
Sbjct: 1919 LRFTQSSLWTREPLLAFRRLVFGASGLGAQVGNCWLQYAKLCRLAGHYETAHRAILEAQA 1978
Query: 1378 SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437
SGAPNVHMEKAKLLW T+RSD AI ELQQ+LLN P VV ST ISSI SL + P NP P
Sbjct: 1979 SGAPNVHMEKAKLLWITKRSDSAIIELQQSLLNMPEGVVDSTVISSINSLLMAPPNPEPT 2038
Query: 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497
+ NTQ+ EK+D+AKTLLLYS+WIH++GQKQK+DV+ LY++V+EL P WEKGYF++AKY
Sbjct: 2039 VRNTQSFKEKKDVAKTLLLYSKWIHHSGQKQKKDVLNLYTQVKELLP-WEKGYFHLAKYY 2097
Query: 1498 DDVLVDARKRQEENSEIG-------------PSEKRWWFYVPDVLLFYAKGLHRGHKNLF 1544
D++ VDARK Q+E+S +EK W Y+ + FYAK LH GHKNLF
Sbjct: 2098 DELYVDARKCQQESSVFSSAGSKKGSVSSNLSTEKAGWDYLFKGMYFYAKALHSGHKNLF 2157
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKV-MSIMRGCLKDLPAYQWLTVLPQLV 1603
QALPRLLTLWFDFG+I + +GS+ NK+LK+ + KV MS+MRGCLKDLP YQWLTVLPQLV
Sbjct: 2158 QALPRLLTLWFDFGTIYKTSGSAGNKELKSTHMKVIMSLMRGCLKDLPTYQWLTVLPQLV 2217
Query: 1604 SRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSA 1663
SRICHQN + V +VK+IITSVL Q+PQQGLWIMAAVSKST+P+RREAAAEIIQ A+KG
Sbjct: 2218 SRICHQNADTVLMVKNIITSVLHQFPQQGLWIMAAVSKSTVPARREAAAEIIQGARKGFN 2277
Query: 1664 HGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLT 1723
+ +NLF QF SL DH IKLCFH GQ +S+ INI+TEFSALKRMMPL IIMPIQQSLT
Sbjct: 2278 QSDRGHNLFIQFASLTDHFIKLCFHGGQPRSKVINIATEFSALKRMMPLDIIMPIQQSLT 2337
Query: 1724 VTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLC 1783
++LP N E S+ +FS SDLPTISGIADEAEILSSLQRPKKI+LLG+DGI+ PFLC
Sbjct: 2338 ISLPAFHMNNNERHSASVFSGSDLPTISGIADEAEILSSLQRPKKIILLGNDGIEYPFLC 2397
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
KPKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAV PLTEDCG+VEWVPHTRGL
Sbjct: 2398 KPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVAPLTEDCGLVEWVPHTRGL 2457
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
R+ILQDIYISCGKFDRQKTNPQIKRIYDQ K E EMLKTKILPMFPPVFHKWFLTTF
Sbjct: 2458 RHILQDIYISCGKFDRQKTNPQIKRIYDQCAVK-KEYEMLKTKILPMFPPVFHKWFLTTF 2516
Query: 1904 SEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL 1963
SEPAAWFR+RVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVDFSCLFDKGL
Sbjct: 2517 SEPAAWFRSRVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVDFSCLFDKGLQ 2576
Query: 1964 LEKPELVPFRLTQ 1976
LEKPELVPFRLTQ
Sbjct: 2577 LEKPELVPFRLTQ 2589
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2037 | ||||||
| TAIR|locus:2164481 | 2702 | ATR "Ataxia telangiectasia-mut | 0.963 | 0.726 | 0.680 | 0.0 | |
| UNIPROTKB|F1NGW1 | 2664 | Gga.21455 "Uncharacterized pro | 0.246 | 0.188 | 0.406 | 1.7e-180 | |
| MGI|MGI:108028 | 2635 | Atr "ataxia telangiectasia and | 0.246 | 0.190 | 0.408 | 6.5e-180 | |
| UNIPROTKB|J9P2H2 | 2640 | ATR "Uncharacterized protein" | 0.246 | 0.190 | 0.401 | 3e-174 | |
| UNIPROTKB|E2QXA4 | 2650 | ATR "Uncharacterized protein" | 0.246 | 0.189 | 0.401 | 3.1e-174 | |
| UNIPROTKB|Q13535 | 2644 | ATR "Serine/threonine-protein | 0.248 | 0.191 | 0.400 | 9.9e-174 | |
| UNIPROTKB|Q9DE14 | 2654 | atr "Serine/threonine-protein | 0.247 | 0.190 | 0.398 | 3.8e-172 | |
| ZFIN|ZDB-GENE-070912-458 | 2651 | atr "ataxia telangiectasia and | 0.252 | 0.193 | 0.405 | 8.7e-163 | |
| UNIPROTKB|F1MLY7 | 2626 | ATR "Uncharacterized protein" | 0.246 | 0.191 | 0.405 | 4.5e-151 | |
| UNIPROTKB|F1SKG2 | 2646 | ATR "Uncharacterized protein" | 0.246 | 0.189 | 0.403 | 4.4e-150 |
| TAIR|locus:2164481 ATR "Ataxia telangiectasia-mutated and RAD3-related" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 6857 (2418.8 bits), Expect = 0., P = 0.
Identities = 1355/1992 (68%), Positives = 1593/1992 (79%)
Query: 4 SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFP 63
SD +I +L D+F++V+A A IS+P+ V++SGLG L ++F +LE L +++ +K+ P
Sbjct: 607 SDFDIFSWSLSDDFEQVQAVAAISMPLKVLFSGLGALLHMFPKLEHLLEEKELMIKKAIP 666
Query: 64 ISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQE 123
S GFLSCL G SS D +K AC LLL+ ED +T++ LL+ F CSKCD + E
Sbjct: 667 QSLGFLSCLYG--SSTTDSEKTACHLLLH-EDLKKDETLNSLLQGFRCSKCDKFIEREDE 723
Query: 124 LSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+I+ ++ ++ H D+ L ++YF LYDESSEE QL+CV VIRRIL H + D+
Sbjct: 724 KHFRIIETPEMVKLKMDHHRDYFNLQSLYFNLLYDESSEETQLACVEVIRRILGHTSPDI 783
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
L++TRS+WI+C+++LL++ +R+AFC QIG F+Q ++S LFL E+A+ +S E +
Sbjct: 784 LVRTRSQWIRCLQYLLVHVNTDVREAFCAQIGIFVQHPIVSCLFLSEDATEKSCERNFFN 843
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHXXXXXXXXVEQLDNPHVTVRMNASR 303
+I+ + AA D L+++TLLE+TAE+M+AVDV S+ ++QLD+P++ VR+NAS+
Sbjct: 844 LIEHSLAAAKDLLVIQTLLETTAEVMVAVDVTSELFLICLFLLIDQLDHPNLIVRINASK 903
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI +SC+ H+KGG L+S A I NELFD LSVRL SRP +VREFAEA GVETEELV+
Sbjct: 904 LINRSCYIHVKGGFATLLSTASHIQNELFDNLSVRLTSRPNVVREFAEAVLGVETEELVR 963
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KM+PAVLPKL+V Q+N QA N +NELAK ++TD+VPLIV W+P+VLAFAL+Q +++ LL
Sbjct: 964 KMVPAVLPKLLVYWQENAQAANTLNELAKLIDTDVVPLIVNWLPRVLAFALNQEEDKNLL 1023
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
S L+ Y Q GSDNQEIFAAALPALLDEL+CFVD D+ E + RL R+P I+K+S VLT
Sbjct: 1024 SVLQLYHSQIGSDNQEIFAAALPALLDELVCFVDIADTPETDRRLQRLPDAIKKISKVLT 1083
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
EDLPGFL+NHFVGLLNSIDRKMLHA+D+ LQKQALKRI++LIEM+G +L+TYVPK++V
Sbjct: 1084 NAEDLPGFLQNHFVGLLNSIDRKMLHADDIFLQKQALKRIKLLIEMMGHYLSTYVPKLMV 1143
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLMHAI K++LQ EGL VLHFF +L+ VSPSS K+VISQ+FAALIPFLE++K+ P V L
Sbjct: 1144 LLMHAIEKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQIFAALIPFLEKEKEGPHVYL 1203
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
++VVKILE+LVLKNR I+K+HI EFPLLPSI +L E+N AIQEARG M+LKDQL V+G
Sbjct: 1204 DEVVKILEELVLKNRDIVKEHICEFPLLPSIPSLGELNNAIQEARGLMSLKDQLRDIVNG 1263
Query: 664 LNHENLNVRYMVVCEXXXXXXXXXEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
+ HENLNVRYMV CE EDV ALI GE SD+++LS+LI+ LL+GCAEESRT
Sbjct: 1264 MKHENLNVRYMVACELSKLLYNRNEDVAALIAGELVSDMEILSSLITYLLQGCAEESRTT 1323
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGA+GA+DPAKV+ SC RFKI+CSDDDLIFELI KHLARAFRAA DT
Sbjct: 1324 VGQRLKLVCADCLGAIGAIDPAKVRVASCSRFKIQCSDDDLIFELIHKHLARAFRAAQDT 1383
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
IIQDSAALAIQELLKIAGCE SL NV VL +EH+ V SG+ +E+ R
Sbjct: 1384 IIQDSAALAIQELLKIAGCEPSLAGNVV-----VLTPQEHVQVNVSGSRRCGGNNEVKDR 1438
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKE+IAPCLTSRFQLP+ SD S GPIY PSMSFRRW+ YWIRKLT A
Sbjct: 1439 GQKLWDRFSNYVKELIAPCLTSRFQLPNVSDPGSAGPIYRPSMSFRRWLSYWIRKLTAFA 1498
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSR SIF ACRGIVRHDMQTA YLLPYLVL+ VCHGTE ARL I++EILSVLDAAAS++
Sbjct: 1499 TGSRVSIFAACRGIVRHDMQTATYLLPYLVLDVVCHGTEAARLSISEEILSVLDAAASEN 1558
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTS---KQQGSKSKHPA 1019
SG +++ GQSEVC+QA+FTLLDNLGQWVDDVKQ +ALS SL S +Q KSK
Sbjct: 1559 SGVTINSFGVGQSEVCVQAVFTLLDNLGQWVDDVKQGVALSSSLQSSGGRQVAPKSKDQV 1618
Query: 1020 SSM--HQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPA 1077
S+ QD LL QC+YV LL AIPKVTLARASFRCQAYARSLMY ESHVR KSGS NPA
Sbjct: 1619 SNSTTEQDHLLVQCKYVLELLLAIPKVTLARASFRCQAYARSLMYLESHVRGKSGSLNPA 1678
Query: 1078 AEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSC 1137
AEK+G FE+ DVS LM IYS LDEPDGLSG A L KSL+LQD+LL NKKSGNWA+VFT+C
Sbjct: 1679 AEKTGIFENADVSSLMGIYSCLDEPDGLSGFASLSKSLNLQDQLLINKKSGNWADVFTAC 1738
Query: 1138 EQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197
EQALQMEPTSVQRHSDVLNCLLNMCH Q MVTHVDGLISR+P+YKKTWC QGVQAAWRLG
Sbjct: 1739 EQALQMEPTSVQRHSDVLNCLLNMCHHQTMVTHVDGLISRVPEYKKTWCTQGVQAAWRLG 1798
Query: 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIA 1257
+WDLMDEYL GAD EGLL SSS+SNASFD DVAKIL AMMKKD +SV++ I +SKQ LIA
Sbjct: 1799 KWDLMDEYLDGADAEGLLFSSSDSNASFDRDVAKILHAMMKKDQYSVAEGIAISKQALIA 1858
Query: 1258 PLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENR 1317
PLAAAGMDSYTRAYPF+VKLHLL+ELEDF A+L DS+LEKSF SD FSK + NWENR
Sbjct: 1859 PLAAAGMDSYTRAYPFVVKLHLLRELEDFQAVLNGDSYLEKSFSTSDQVFSKAVDNWENR 1918
Query: 1318 LKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA 1377
L++TQ SLW REPLLAFRR+VFGASGLGA+VGNCWLQYAKLCRLAGHYETA RAILEAQA
Sbjct: 1919 LRFTQSSLWTREPLLAFRRLVFGASGLGAQVGNCWLQYAKLCRLAGHYETAHRAILEAQA 1978
Query: 1378 SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGXXXXXXXXXXXXXXXXXXXX 1437
SGAPNVHMEKAKLLW T+RSD AI ELQQ+LLN P VV
Sbjct: 1979 SGAPNVHMEKAKLLWITKRSDSAIIELQQSLLNMPEGVVDSTVISSINSLLMAPPNPEPT 2038
Query: 1438 XXXTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497
TQ+ EK+D+AKTLLLYS+WIH++GQKQK+DV+ LY++V+EL P WEKGYF++AKY
Sbjct: 2039 VRNTQSFKEKKDVAKTLLLYSKWIHHSGQKQKKDVLNLYTQVKELLP-WEKGYFHLAKYY 2097
Query: 1498 DDVLVDARKRQEENSEIGPS-------------EKRWWFYVPDVLLFYAKGLHRGHKNLF 1544
D++ VDARK Q+E+S + EK W Y+ + FYAK LH GHKNLF
Sbjct: 2098 DELYVDARKCQQESSVFSSAGSKKGSVSSNLSTEKAGWDYLFKGMYFYAKALHSGHKNLF 2157
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVS 1604
QALPRLLTLWFDFG+I + +GS+ NK+LK+ + K+MS+MRGCLKDLP YQWLTVLPQLVS
Sbjct: 2158 QALPRLLTLWFDFGTIYKTSGSAGNKELKSTHMKIMSLMRGCLKDLPTYQWLTVLPQLVS 2217
Query: 1605 RICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAH 1664
RICHQN + V +VK+IITSVL Q+PQQGLWIMAAVSKST+P+ G
Sbjct: 2218 RICHQNADTVLMVKNIITSVLHQFPQQGLWIMAAVSKSTVPARREAAAEIIQGARKGFNQ 2277
Query: 1665 GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTV 1724
+ +NLF QF SL DH IKLCFH GQ +S+ INI+TEFSALKRMMPL IIMPIQQSLT+
Sbjct: 2278 SDRGHNLFIQFASLTDHFIKLCFHGGQPRSKVINIATEFSALKRMMPLDIIMPIQQSLTI 2337
Query: 1725 TLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK 1784
+LP N E S+ +FS SDLPTISGIADEAEILSSLQRPKKI+LLG+DGI+ PFLCK
Sbjct: 2338 SLPAFHMNNNERHSASVFSGSDLPTISGIADEAEILSSLQRPKKIILLGNDGIEYPFLCK 2397
Query: 1785 PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR 1844
PKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAV PLTEDCG+VEWVPHTRGLR
Sbjct: 2398 PKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVAPLTEDCGLVEWVPHTRGLR 2457
Query: 1845 NILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFS 1904
+ILQDIYISCGKFDRQKTNPQIKRIYDQ K E EMLKTKILPMFPPVFHKWFLTTFS
Sbjct: 2458 HILQDIYISCGKFDRQKTNPQIKRIYDQCAVK-KEYEMLKTKILPMFPPVFHKWFLTTFS 2516
Query: 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL 1964
EPAAWFR+RVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVDFSCLFDKGL L
Sbjct: 2517 EPAAWFRSRVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVDFSCLFDKGLQL 2576
Query: 1965 EKPELVPFRLTQ 1976
EKPELVPFRLTQ
Sbjct: 2577 EKPELVPFRLTQ 2588
|
|
| UNIPROTKB|F1NGW1 Gga.21455 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 991 (353.9 bits), Expect = 1.7e-180, Sum P(4) = 1.7e-180
Identities = 217/534 (40%), Positives = 310/534 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ LL R++ T + V+ Y V L P WE G+FY+AKY D ++ V K ++
Sbjct: 2024 RATLLVGRFMEETANFESNAVMKKYKDVTLLLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2083
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSI---CQRAGS 1566
+ I R+ ++ + + L G++ ++Q++PR+L+LW DFG+ C +A
Sbjct: 2084 QGDLI-----RY------IVHHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYECDKASR 2132
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S +KN K+ ++ L YQ+LT QL+SRICH ++E+ ++ I+ V
Sbjct: 2133 SERVQMKNDLAKINKVITEHTNQLAPYQFLTAFSQLISRICHSHDEVFAVLMVIVAKVFL 2192
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2193 AYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAINMK---ESLGKFIGDATRLTDKLLELC 2249
Query: 1687 FHAGQSKSRTINISTEFSALKRMMP----LGIIMPIQQSLTVTLPPQDANLTESPSSDIF 1742
S ++++ F LKR++ I++P+Q + TLP T + + D F
Sbjct: 2250 NKPVDGNSSALSMNIHFRTLKRLVEEHTFSQILIPLQSVMIPTLPSIPG--THA-NHDPF 2306
Query: 1743 SASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMI 1802
I+G D EIL+SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++I
Sbjct: 2307 PGC-WAYIAGFDDTVEILASLQKPKKITLKGSDGKSYIMMCKPKDDLRKDCRLMEFNSLI 2365
Query: 1803 NRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKT 1862
N+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLRNIL +Y G + T
Sbjct: 2366 NKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRNILIKLYKEKGIY---MT 2422
Query: 1863 NPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTA 1921
++++ +PE +M K +LP PPVFH+WFL TF +P +W+ +R AY + A
Sbjct: 2423 GKELRQHMLPKSAPLPEKLKMFKEVLLPRHPPVFHEWFLRTFPDPTSWYNSRSAYCRSVA 2482
Query: 1922 VWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLT 1975
V SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT
Sbjct: 2483 VMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLT 2536
|
|
| MGI|MGI:108028 Atr "ataxia telangiectasia and Rad3 related" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 989 (353.2 bits), Expect = 6.5e-180, Sum P(5) = 6.5e-180
Identities = 218/534 (40%), Positives = 314/534 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ LL R++ T + V+ Y V P WE G+FY+AKY D ++ V K ++
Sbjct: 1995 RATLLVGRFMEETANFESNAVMKKYKDVTLFLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2054
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ ++L + + L G++ ++Q++PR+L+LW DFG+ ++ G
Sbjct: 2055 QGDLI-----RY------IVLHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYEWEKGGR 2103
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S ++N K+ S++ L YQ+LT QL+SRICH ++E+ ++ II V
Sbjct: 2104 SDRLQMRNDLAKINSVLTEHTNRLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFL 2163
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2164 AYPQQAMWMMTAVSKSSYPMRVNRCKEILTKAIHMK---KSLEKFVGDATRLTDKLLELC 2220
Query: 1687 FHAGQSKSRTINISTEFSALKRMM--PL--GIIMPIQQSLTVTLPPQDANLTESPSSDIF 1742
+ + T+++ST F LKR++ P I++P+Q + TLP + L + D F
Sbjct: 2221 NKSVDGSNSTLSMSTHFKMLKRLVEDPTFSEILIPLQSVMIPTLP---SVLGAHANHDPF 2277
Query: 1743 SASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMI 1802
++G D EILSSLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++I
Sbjct: 2278 PGH-WAYLAGFDDVVEILSSLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSLI 2336
Query: 1803 NRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKT 1862
N+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL IY G + T
Sbjct: 2337 NKSLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKIYKEKGVY---MT 2393
Query: 1863 NPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTA 1921
++++ + E ++ + +LP PPVFH+WFL TF +P +W+ +R AY +TA
Sbjct: 2394 GKELRQCMLPKSAALSEKLKVFQELLLPRHPPVFHEWFLRTFPDPTSWYSSRSAYCRSTA 2453
Query: 1922 VWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLT 1975
V SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT
Sbjct: 2454 VMSMVGYILGLGDRHGENILFDSFTGECVHVDFNCLFNKGETFEVPEIVPFRLT 2507
|
|
| UNIPROTKB|J9P2H2 ATR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 980 (350.0 bits), Expect = 3.0e-174, Sum P(4) = 3.0e-174
Identities = 215/535 (40%), Positives = 313/535 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ +LL R++ T + V+ Y V P WE G+FY+AKY D ++ V K ++
Sbjct: 2000 RAMLLVGRFMEETANFESNAVMKKYKDVTLFLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2059
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ ++L + + L G++ ++Q++PR+L+LW DFG+ ++AG
Sbjct: 2060 QGDLI-----RY------IVLHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYEWEKAGR 2108
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S ++N K+ ++ L YQ+LT QL+SRICH ++E+ ++ II V
Sbjct: 2109 SDRVQMRNDLAKINKVITEHTNHLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFL 2168
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2169 AYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAIHMK---KSLEKFIGDATRLTDKLLELC 2225
Query: 1687 FHAGQSKSRTINISTEFSALKRMM--PL--GIIMPIQQSLTVTLPP-QDANLTESPSSDI 1741
S T+++ST F LK+++ P I++P+Q + TLP A+ P
Sbjct: 2226 NKPVDGSSSTLSMSTHFKMLKKLVEEPTFSEILIPLQSVMIPTLPSIPGAHANHEPFPGH 2285
Query: 1742 FSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAM 1801
++ I+ D EIL+SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++
Sbjct: 2286 WAY-----IASFDDMVEILASLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSL 2340
Query: 1802 INRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQK 1861
IN+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL +Y G +
Sbjct: 2341 INKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKLYKEKGVY---M 2397
Query: 1862 TNPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTT 1920
T ++++ + E ++ + +LP PPVFH+WFL TF +P +W+ +R AY +T
Sbjct: 2398 TGKELRQCMLPKAAALSEKLKVFREFLLPRHPPVFHEWFLRTFPDPTSWYSSRSAYCRST 2457
Query: 1921 AVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLT 1975
AV SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT
Sbjct: 2458 AVMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLT 2512
|
|
| UNIPROTKB|E2QXA4 ATR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 980 (350.0 bits), Expect = 3.1e-174, Sum P(4) = 3.1e-174
Identities = 215/535 (40%), Positives = 313/535 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ +LL R++ T + V+ Y V P WE G+FY+AKY D ++ V K ++
Sbjct: 2010 RAMLLVGRFMEETANFESNAVMKKYKDVTLFLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2069
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ ++L + + L G++ ++Q++PR+L+LW DFG+ ++AG
Sbjct: 2070 QGDLI-----RY------IVLHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYEWEKAGR 2118
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S ++N K+ ++ L YQ+LT QL+SRICH ++E+ ++ II V
Sbjct: 2119 SDRVQMRNDLAKINKVITEHTNHLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFL 2178
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2179 AYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAIHMK---KSLEKFIGDATRLTDKLLELC 2235
Query: 1687 FHAGQSKSRTINISTEFSALKRMM--PL--GIIMPIQQSLTVTLPP-QDANLTESPSSDI 1741
S T+++ST F LK+++ P I++P+Q + TLP A+ P
Sbjct: 2236 NKPVDGSSSTLSMSTHFKMLKKLVEEPTFSEILIPLQSVMIPTLPSIPGAHANHEPFPGH 2295
Query: 1742 FSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAM 1801
++ I+ D EIL+SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++
Sbjct: 2296 WAY-----IASFDDMVEILASLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSL 2350
Query: 1802 INRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQK 1861
IN+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL +Y G +
Sbjct: 2351 INKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKLYKEKGVY---M 2407
Query: 1862 TNPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTT 1920
T ++++ + E ++ + +LP PPVFH+WFL TF +P +W+ +R AY +T
Sbjct: 2408 TGKELRQCMLPKAAALSEKLKVFREFLLPRHPPVFHEWFLRTFPDPTSWYSSRSAYCRST 2467
Query: 1921 AVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLT 1975
AV SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT
Sbjct: 2468 AVMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLT 2522
|
|
| UNIPROTKB|Q13535 ATR "Serine/threonine-protein kinase ATR" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 993 (354.6 bits), Expect = 9.9e-174, Sum P(5) = 9.9e-174
Identities = 214/534 (40%), Positives = 312/534 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ +LL R++ T + ++ Y V P WE G+FY+AKY D ++ V K ++
Sbjct: 2001 RAMLLVGRFMEETANFESNAIMKKYKDVTACLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2060
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ ++L + + L G++ ++Q++PR+LTLW D+G+ ++AG
Sbjct: 2061 QGDLI-----RY------IVLHFGRSLQYGNQFIYQSMPRMLTLWLDYGTKAYEWEKAGR 2109
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S ++N GK+ ++ L YQ+LT QL+SRICH ++E+ ++ II V
Sbjct: 2110 SDRVQMRNDLGKINKVITEHTNYLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFL 2169
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2170 AYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAIHMK---KSLEKFVGDATRLTDKLLELC 2226
Query: 1687 FHAGQSKSRTINISTEFSALKRMMPLG----IIMPIQQSLTVTLPPQDANLTESPSSDIF 1742
S T+++ST F LK+++ I++P+Q + TLP S + F
Sbjct: 2227 NKPVDGSSSTLSMSTHFKMLKKLVEEATFSEILIPLQSVMIPTLPSILGTHANHASHEPF 2286
Query: 1743 SASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMI 1802
I+G D EIL+SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++I
Sbjct: 2287 PGH-WAYIAGFDDMVEILASLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSLI 2345
Query: 1803 NRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKT 1862
N+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL +Y G + T
Sbjct: 2346 NKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKLYKEKGVY---MT 2402
Query: 1863 NPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTA 1921
++++ + E ++ + +LP PP+FH+WFL TF +P +W+ +R AY +TA
Sbjct: 2403 GKELRQCMLPKSAALSEKLKVFREFLLPRHPPIFHEWFLRTFPDPTSWYSSRSAYCRSTA 2462
Query: 1922 VWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLT 1975
V SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT
Sbjct: 2463 VMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLT 2516
|
|
| UNIPROTKB|Q9DE14 atr "Serine/threonine-protein kinase atr" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 983 (351.1 bits), Expect = 3.8e-172, Sum P(4) = 3.8e-172
Identities = 213/534 (39%), Positives = 310/534 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ +LL R + T + V+ Y V L P WE G+FY+AKY D ++ V K ++
Sbjct: 2012 RAMLLVGRLMEETANFESNAVMKKYKDVTALLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2071
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ ++L + + L G++ ++Q++PR+L+LW DFG+ ++AG
Sbjct: 2072 QGDLI-----RY------IVLHFGRSLQFGNQYIYQSMPRMLSLWLDFGAKVYEWEKAGR 2120
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
+ +KN K+ ++ L YQ+LT QL+SRICH ++E+ ++ I+ V
Sbjct: 2121 ADRLQMKNELMKINKVISDHKNQLAPYQFLTAFSQLISRICHSHDEVFAVLMEIVAKVFV 2180
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2181 AYPQQAMWMMTAVSKSSYPMRVNRCKEILEKAIHMKP---SLGKFIGDATRLTDKLLELC 2237
Query: 1687 FHAGQSKSRTINISTEFSALKRMMP----LGIIMPIQQSLTVTLPPQDANLTESPSSDIF 1742
+ T++++ F LK+++ I++P+Q + TLP A + D F
Sbjct: 2238 NKPVDGNTSTLSMNIHFKMLKKLVEETTFSEILIPLQSVMIPTLP-STAGKRDHADHDPF 2296
Query: 1743 SASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMI 1802
+SG D EIL SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++I
Sbjct: 2297 PGH-WAYLSGFDDAVEILPSLQKPKKISLKGSDGKSYIMMCKPKDDLRKDCRLMEFNSLI 2355
Query: 1803 NRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKT 1862
N+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T G RNIL +Y G + K
Sbjct: 2356 NKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGFRNILIKLYKEKGIYMGGK- 2414
Query: 1863 NPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTA 1921
++++ + E ++ K +LP PP+FH+WFL TF +P +W+ +R AY +TA
Sbjct: 2415 --ELRQCMLPKSAPLQEKLKVFKEALLPRHPPLFHEWFLRTFPDPTSWYNSRSAYCRSTA 2472
Query: 1922 VWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLT 1975
V SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT
Sbjct: 2473 VMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLT 2526
|
|
| ZFIN|ZDB-GENE-070912-458 atr "ataxia telangiectasia and Rad3 related" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 984 (351.4 bits), Expect = 8.7e-163, Sum P(4) = 8.7e-163
Identities = 222/548 (40%), Positives = 314/548 (57%)
Query: 1442 QTLNEKRDI---AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498
QTL + + I +LL R++ T + ++ Y V L P WE G FY+AKY D
Sbjct: 1998 QTLTDPKRIQVKGNAMLLVGRYMEETANFESNAIMKTYKDVTTLLPEWEDGNFYLAKYYD 2057
Query: 1499 DVL--VDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFD 1556
V+ V K + + + I R+ ++ ++ K L G++ ++QA+PR+LTLW D
Sbjct: 2058 KVMPMVTDNKLERQGNLI-----RY------IVTYFGKALQFGNQYIYQAMPRMLTLWLD 2106
Query: 1557 FGSIC---QRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEI 1613
FG+ ++AG S ++ K+ S++ +L YQ+LT QL+SRICH + E+
Sbjct: 2107 FGAKVYEFEKAGRSDRVQMRTELTKINSVISDHTSNLSPYQFLTAFSQLISRICHSSNEV 2166
Query: 1614 VRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFG 1673
++ I+ V YPQQ +W+M AVSKS+ P+ + +S G
Sbjct: 2167 FAVLMEIVAKVFLAYPQQAMWMMTAVSKSSYPTRMNRCKEILKKAI---SLNDSFMKFIG 2223
Query: 1674 QFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMM--PL--GIIMPIQQSLTVTLPPQ 1729
L D L++L S T+++S F LK+++ P I++P+Q L TLP
Sbjct: 2224 DANRLTDKLLELGNKPVDGNSSTLSMSVHFKMLKKLVEEPTFSQILIPLQSVLIPTLPST 2283
Query: 1730 DANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDL 1789
+P D F + +SG D EIL+SLQ+PKKI L GSDG +CKPKDDL
Sbjct: 2284 GG---ANPKHDAFPGHWV-YLSGFDDTVEILASLQKPKKISLKGSDGKFYTMMCKPKDDL 2339
Query: 1790 RKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQD 1849
RKD R+MEF +IN+ L K ESRRR L IRT+AVIPL E+CG++EWV T GLR+IL
Sbjct: 2340 RKDCRLMEFNCLINKSLRKDAESRRRDLRIRTYAVIPLNEECGIIEWVNKTAGLRHILTK 2399
Query: 1850 IYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKIL-PMFPPVFHKWFLTTFSEPAA 1908
+Y G + + ++K++ E L +L PPVFH+WFL TF +P +
Sbjct: 2400 LYKEKGIY---VSGTELKKLILPKTAPFQEKLKLHKDVLCARHPPVFHEWFLRTFPDPTS 2456
Query: 1909 WFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPE 1968
W+ +R AY +TAV SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG + PE
Sbjct: 2457 WYNSRSAYCRSTAVMSMVGYILGLGDRHGENILFDSFTGECVHVDFNCLFNKGETFDVPE 2516
Query: 1969 LVPFRLTQ 1976
+VPFRLTQ
Sbjct: 2517 VVPFRLTQ 2524
|
|
| UNIPROTKB|F1MLY7 ATR "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 989 (353.2 bits), Expect = 4.5e-151, Sum P(4) = 4.5e-151
Identities = 217/535 (40%), Positives = 314/535 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ LL R++ T + V+ Y V P WE G+FY+AKY D ++ V K ++
Sbjct: 1986 RATLLVGRFMEETANFESNAVMKKYKDVTLFLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2045
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ +LL + + L G++ ++Q++PR+L+LW DFG+ ++AG
Sbjct: 2046 QGDLI-----RY------ILLHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYEWEKAGR 2094
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S ++N K+ ++ L YQ+LT QL+SRICH ++E+ ++ II VL
Sbjct: 2095 SDRVQMRNDLVKINKVITEHTNQLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVLL 2154
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2155 AYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAIQMK---KSLEKFVGDATRLTDKLLELC 2211
Query: 1687 FHAGQSKSRTINISTEFSALKRMMPLG----IIMPIQQSLTVTLPP-QDANLTESPSSDI 1741
+ S T+++ST F LK+++ I++P+Q + TLP A+ P
Sbjct: 2212 NKSVDGSSSTLSMSTHFKMLKKLVEEATFSEILIPLQSVMIPTLPSIPGAHANHEPFPGH 2271
Query: 1742 FSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAM 1801
++ I+G D EIL+SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++
Sbjct: 2272 WAY-----IAGFDDTVEILASLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSL 2326
Query: 1802 INRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQK 1861
IN+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL +Y G +
Sbjct: 2327 INKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKLYKEKGVY---M 2383
Query: 1862 TNPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTT 1920
T ++++ + E ++ + +LP PPVFH+WFL TF +P +W+ +R AY +T
Sbjct: 2384 TGKELRQCMLPKSAALSEKLKVFQEFLLPRHPPVFHEWFLRTFPDPTSWYSSRSAYCRST 2443
Query: 1921 AVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLT 1975
AV SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT
Sbjct: 2444 AVMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLT 2498
|
|
| UNIPROTKB|F1SKG2 ATR "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 986 (352.1 bits), Expect = 4.4e-150, Sum P(4) = 4.4e-150
Identities = 216/535 (40%), Positives = 313/535 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ +LL R++ T + V+ Y V P WE G+FY+AKY D ++ V K ++
Sbjct: 2006 RAMLLVGRFMEETANFESNAVMKKYKDVTLFLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2065
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ ++L + + L G++ ++Q++PR+L+LW DFG+ ++AG
Sbjct: 2066 QGDLI-----RY------IVLHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYEWEKAGR 2114
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S ++N K+ ++ L YQ+LT QL+SRICH ++E+ ++ II V
Sbjct: 2115 SDRVQMRNDLVKINKVITEHTNHLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFL 2174
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2175 AYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAILMK---KSLEKFVGDATRLTDKLLELC 2231
Query: 1687 FHAGQSKSRTINISTEFSALKRMMPLG----IIMPIQQSLTVTLPP-QDANLTESPSSDI 1741
S T+++ST F LKR++ I++P+Q + TLP A+ P
Sbjct: 2232 NKPVDGSSSTLSMSTHFKMLKRLVEEATFSEILIPLQSVMIPTLPSIPGAHANHEPFPGH 2291
Query: 1742 FSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAM 1801
++ I+G D EIL+SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++
Sbjct: 2292 WAY-----IAGFDDTVEILASLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSL 2346
Query: 1802 INRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQK 1861
IN+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL +Y G +
Sbjct: 2347 INKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKLYKEKGVY---M 2403
Query: 1862 TNPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTT 1920
T ++++ + E ++ + +LP PPVFH+WFL TF +P +W+ +R AY +T
Sbjct: 2404 TGKELRQCMLPKSAALSEKLKVFREFLLPRHPPVFHEWFLRTFPDPTSWYSSRSAYCRST 2463
Query: 1921 AVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLT 1975
AV SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT
Sbjct: 2464 AVMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLT 2518
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FKS4 | ATR_ARATH | 2, ., 7, ., 1, 1, ., 1 | 0.6957 | 0.9636 | 0.7264 | yes | no |
| Q5Z987 | ATR_ORYSJ | 2, ., 7, ., 1, 1, ., 1 | 0.6406 | 0.9523 | 0.7158 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.7.11.1 | 0.946 |
| 3rd Layer | 2.7.11 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2037 | |||
| cd00892 | 237 | cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and | 1e-115 | |
| cd05164 | 222 | cd05164, PIKKc, Phosphoinositide 3-kinase-related | 2e-70 | |
| cd05171 | 279 | cd05171, PIKKc_ATM, Ataxia telangiectasia mutated | 2e-69 | |
| COG5032 | 2105 | COG5032, TEL1, Phosphatidylinositol kinase and pro | 3e-58 | |
| pfam02259 | 350 | pfam02259, FAT, FAT domain | 5e-55 | |
| smart00146 | 240 | smart00146, PI3Kc, Phosphoinositide 3-kinase, cata | 9e-52 | |
| cd05169 | 280 | cd05169, PIKKc_TOR, TOR (Target of rapamycin), cat | 4e-51 | |
| cd00142 | 219 | cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI | 5e-49 | |
| pfam00454 | 233 | pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- | 7e-46 | |
| cd05170 | 307 | cd05170, PIKKc_SMG1, Suppressor of morphogenetic e | 2e-41 | |
| cd05172 | 235 | cd05172, PIKKc_DNA-PK, DNA-dependent protein kinas | 6e-40 | |
| pfam08064 | 107 | pfam08064, UME, UME (NUC010) domain | 1e-25 | |
| smart00802 | 107 | smart00802, UME, Domain in UVSB PI-3 kinase, MEI-4 | 3e-21 | |
| cd05163 | 253 | cd05163, TRRAP, TRansformation/tRanscription domai | 4e-14 | |
| cd05166 | 353 | cd05166, PI3Kc_II, Phosphoinositide 3-kinase (PI3K | 1e-07 | |
| cd05168 | 293 | cd05168, PI4Kc_III_beta, Phosphoinositide 4-kinase | 3e-07 | |
| cd05167 | 311 | cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinas | 9e-07 | |
| cd00893 | 289 | cd00893, PI4Kc_III, Phosphoinositide 4-kinase (PI4 | 1e-06 | |
| cd00896 | 350 | cd00896, PI3Kc_III, Phosphoinositide 3-kinase (PI3 | 9e-06 | |
| cd00891 | 352 | cd00891, PI3Kc, Phosphoinositide 3-kinase (PI3K), | 2e-05 | |
| cd05177 | 354 | cd05177, PI3Kc_C2_gamma, Phosphoinositide 3-kinase | 0.001 | |
| cd05176 | 353 | cd05176, PI3Kc_C2_alpha, Phosphoinositide 3-kinase | 0.003 |
| >gnl|CDD|119418 cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 363 bits (935), Expect = e-115
Identities = 137/227 (60%), Positives = 159/227 (70%), Gaps = 40/227 (17%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
ISG DE EIL+SLQ+PKKI L+GSDG PFLCKPKDDLRKD+R+MEF +INRLLSK
Sbjct: 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKD 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRI 1869
PESRRR+LYIRT+AVIPL E+CG++EWVP+T LR+IL +IY
Sbjct: 61 PESRRRRLYIRTYAVIPLNEECGIIEWVPNTATLRSILLEIY------------------ 102
Query: 1870 YDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHI 1929
PPVFH+WFL F +P+AW +AR AY +TAV SMVG+I
Sbjct: 103 ----------------------PPVFHEWFLENFPDPSAWLKARNAYTRSTAVMSMVGYI 140
Query: 1930 VGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQ 1976
+GLGDRHGENILFDS TGD VHVDF+CLFDKG LE PE VPFRLTQ
Sbjct: 141 LGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQ 187
|
ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central role in regulating the replication checkpoint. ATR stabilizes replication forks by promoting the association of DNA polymerases with the fork. Preventing fork collapse is essential in preserving genomic integrity. ATR plays a role in normal cell growth and in response to DNA damage. Length = 237 |
| >gnl|CDD|119424 cd05164, PIKKc, Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 2e-70
Identities = 98/227 (43%), Positives = 120/227 (52%), Gaps = 48/227 (21%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
I+ D IL S Q+PKKI L GSDG K FL K +DLR+D R+M+ N LL+K
Sbjct: 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKD 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRI 1869
E RRRKL IRT+AVIPL G++EWV T L+
Sbjct: 61 AECRRRKLTIRTYAVIPLNSRSGLIEWVEGTTTLK------------------------- 95
Query: 1870 YDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHI 1929
PV KWF F +P WF AR Y +TAV S+VG+I
Sbjct: 96 -----------------------PVLKKWFWLQFPDPEQWFAARKNYTRSTAVMSIVGYI 132
Query: 1930 VGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQ 1976
+GLGDRH +NIL D TG+ VH+DF C+F+KG L PELVPFRLT+
Sbjct: 133 LGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTR 179
|
Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) domain. PIKKs have diverse functions including cell-cycle checkpoints, genome surveillance, mRNA surveillance, and translation control. Length = 222 |
| >gnl|CDD|119431 cd05171, PIKKc_ATM, Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 2e-69
Identities = 88/229 (38%), Positives = 122/229 (53%), Gaps = 2/229 (0%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
+S D + PK I +GSDG K L K DD R+D+ M + ++N LL +
Sbjct: 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERN 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRI 1869
E+R+RKL IRT+ V+PL+ G++EWV T L L + ++ + R
Sbjct: 61 KETRKRKLRIRTYKVVPLSPRAGILEWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRK 120
Query: 1870 YDQFQGKIPEDEMLKT--KILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVG 1927
K +E LK KI F PVF +FL F +P WF R+AY + A S+VG
Sbjct: 121 AMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKFLDPQDWFERRLAYTRSVATSSIVG 180
Query: 1928 HIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQ 1976
+I+GLGDRH NIL D T + VH+D F++G +L PE VPFRLT+
Sbjct: 181 YILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTR 229
|
ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transition. Patients with the human genetic disorder Ataxia telangiectasia (A-T), caused by truncating mutations in ATM, show genome instability, increased cancer risk, immunodeficiency, compromised mobility, and neurodegeneration. A-T displays clinical heterogeneity, which is correlated to the degree of retained ATM activity. Length = 279 |
| >gnl|CDD|227365 COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 223 bits (570), Expect = 3e-58
Identities = 104/393 (26%), Positives = 169/393 (43%), Gaps = 41/393 (10%)
Query: 1590 LPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRRE 1649
L + +L QL+SR+ +N +I ++L P S +
Sbjct: 1634 LLHLLFEPILAQLLSRLSSENNKISV-------ALLIDKPLHEERENFPSGLSLSSFQSS 1686
Query: 1650 AAAEIIQAAKKGSAHGNSANNLF-GQFTSL-IDHLIKLCFHAGQSKSRTINISTEFSALK 1707
E+I+ + + F + L + + + + R +
Sbjct: 1687 FLKELIKKSPR------KIRKKFKIDISLLNLSRKLYISVLR-SIRKRLKRLLELRLKKV 1739
Query: 1708 RMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSS-LQRP 1766
+ L + LP Q I E ++ S LQRP
Sbjct: 1740 SPKL----LLFHAFLEIKLPGQY-----------LLDKPFVLIERFEPEVSVVKSHLQRP 1784
Query: 1767 KKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIP 1826
+++ + GSDG F+ K DDLR+D ++ ++N++L K E+RRR L+IR + VIP
Sbjct: 1785 RRLTIRGSDGKLYSFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIP 1844
Query: 1827 LTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLK-- 1884
L+ G++EWVP++ L +IL++ + K + + K +
Sbjct: 1845 LSPGSGIIEWVPNSDTLHSILREYH----KRKNISIDQEKKLAAR-LDNLKLL-LKDEFF 1898
Query: 1885 TKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDS 1944
TK PPV + WF +F P W AR +A + AV+S++G+I+GLGDRH NIL D
Sbjct: 1899 TKATLKSPPVLYDWFSESFPNPEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDR 1958
Query: 1945 TTGDCVHVDF-SCLFDKGLLLEKPELVPFRLTQ 1976
++G +H+DF LF+ PE VPFRLT+
Sbjct: 1959 SSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTR 1991
|
Length = 2105 |
| >gnl|CDD|216950 pfam02259, FAT, FAT domain | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 5e-55
Identities = 97/377 (25%), Positives = 155/377 (41%), Gaps = 43/377 (11%)
Query: 1189 GVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKI 1248
++AAWRLG+WD MDEYLS E AS D + L A+ + D I
Sbjct: 4 ALEAAWRLGQWDEMDEYLSSMKE-----------ASPDRSFYQALLALHRNDFDEAERYI 52
Query: 1249 GVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFS 1308
++Q+L L+A +SY RAYP +V+L L ELE+ L S +
Sbjct: 53 DKARQLLDTELSALPGESYNRAYPLLVRLQQLAELEEAIQYKSKLGDGSSESLKSIRQ-- 110
Query: 1309 KLMANWENRLKYTQPSLWAREPLLAFRRMVFGA--SGLGAEVGNCWLQYAKLCRLAGHYE 1366
W RL Q + + +L++R +V E+ WL++A L R +G +
Sbjct: 111 ----TWRKRLPGCQDDVEIWQDILSWRSLVLSLINYRGPHELAEMWLKFANLARKSGRFS 166
Query: 1367 TATRAILEAQASGA----PNVHMEKAKLLWSTRRSDGAIAELQQ---NLLNKPVEVVGST 1419
A +A+L+ PNV + AK LW+ + AI +L++ L+KPV +
Sbjct: 167 LAEKALLKLLTYDTREDLPNVVIAYAKYLWAKGQQQEAIQKLREFVSCYLSKPVGSSSDS 226
Query: 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH----YTGQKQKEDVITL 1475
+ + + +N + + +A+ L W+ GQ +K++++
Sbjct: 227 ELLLGLTYE------VISSTNLEYFE-AKLLARCFLKLGEWLDKLQMNWGQGKKDEILQA 279
Query: 1476 YSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKG 1535
Y + W K + A +VL + SE+ YV + Y K
Sbjct: 280 YRTAVQFDDQWYKAWHSWALANFEVLQLDEQEPLAPSELR------SEYVVPAVEGYLKS 333
Query: 1536 LHRGHKNLFQALPRLLT 1552
L + Q L RLLT
Sbjct: 334 LSLSSEKSLQDLLRLLT 350
|
The FAT domain is named after FRAP, ATM and TRRAP. Length = 350 |
| >gnl|CDD|214538 smart00146, PI3Kc, Phosphoinositide 3-kinase, catalytic domain | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 9e-52
Identities = 68/198 (34%), Positives = 105/198 (53%), Gaps = 12/198 (6%)
Query: 1781 FLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840
+ K DDLR+D R+++ ++N+LL K E+RRR L++R + VIP G++E VP++
Sbjct: 1 VIFKGGDDLRQDERVLQLLRLMNKLLQKDKETRRRDLHLRPYKVIPTGPKSGLIEVVPNS 60
Query: 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFL 1900
L IL+ ++ +QK R + K E + T PV + WF
Sbjct: 61 TTLHEILK-------EYRKQKGKVLDLRSQTATRLKKLELFLEATG--KFPDPVLYDWFT 111
Query: 1901 TTFSEPA-AWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD 1959
F +P+ +F AR + + A +S++ +I+GLGDRH +NI+ D TG H+DF +
Sbjct: 112 KKFPDPSEDYFEARKNFTRSCAGYSVITYILGLGDRHNDNIMLD-KTGHLFHIDFGFILG 170
Query: 1960 KGLLLEKP-ELVPFRLTQ 1976
G L E VPFRLT
Sbjct: 171 NGPKLFGFPERVPFRLTP 188
|
Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities. Length = 240 |
| >gnl|CDD|119429 cd05169, PIKKc_TOR, TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 4e-51
Identities = 85/243 (34%), Positives = 124/243 (51%), Gaps = 31/243 (12%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
IS +++ S QRP+++ ++GSDG + FL K +DLR D R+M+ +IN LL
Sbjct: 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKND 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHT----------RGLRNILQDI------YIS 1853
E+ +R L I+T++VIPL+ + G++ WVP R RNI ++ S
Sbjct: 61 SETSKRNLSIQTYSVIPLSPNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKS 120
Query: 1854 CGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRAR 1913
+D K ++ + L+ KIL W + SE AW R
Sbjct: 121 APDYD--NLTLIQKLEVFEYALNNTPGDDLR-KIL---------WLKSPSSE--AWLERR 166
Query: 1914 VAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEK-PELVPF 1972
+ + AV SMVG+I+GLGDRH NI+ D TG +H+DF F+ + EK PE VPF
Sbjct: 167 TNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPF 226
Query: 1973 RLT 1975
RLT
Sbjct: 227 RLT 229
|
TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with other proteins to form two distinct complexes, TORC1 and TORC2. TORC1 is involved in diverse growth-related functions including protein synthesis, nutrient use and transport, autophagy and stress responses. TORC2 is involved in organizing cytoskeletal structures. Length = 280 |
| >gnl|CDD|119416 cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 5e-49
Identities = 66/227 (29%), Positives = 101/227 (44%), Gaps = 51/227 (22%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
I+ I+ S RPKK+ L+G+DG + L K DDLR+D R+++F ++N++L K
Sbjct: 1 IAIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKE 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRI 1869
L++ T++VIPL+ G++E VP + L + L
Sbjct: 61 L---GLDLFLTTYSVIPLSPRSGLIEVVPGSVTLEDDL---------------------- 95
Query: 1870 YDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHI 1929
KW + W AR + + A +S+ G+I
Sbjct: 96 --------------------------SKWLKRKSPDEDEWQEARENFISSLAGYSVAGYI 129
Query: 1930 VGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQ 1976
+G+GDRH +NI+ D TG H+DF +F K E VPFRLT
Sbjct: 130 LGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTP 176
|
Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI4Ks produce PtdIns(4)P, the major precursor to important signaling phosphoinositides. PIKKs have diverse functions including cell-cycle checkpoints, genome surveillance, mRNA surveillance, and translation control. Length = 219 |
| >gnl|CDD|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase | Back alignment and domain information |
|---|
Score = 165 bits (420), Expect = 7e-46
Identities = 65/197 (32%), Positives = 94/197 (47%), Gaps = 19/197 (9%)
Query: 1780 PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPH 1839
PF+ K DDLR+D R+++ ++N+LLS RR + + VIPL G++EWVP+
Sbjct: 3 PFIFKGGDDLRQDERVLQLIGLMNKLLSGEGLDRR----LAAYLVIPLGPGSGLIEWVPN 58
Query: 1840 TRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWF 1899
+ L I + + G Y + L K +WF
Sbjct: 59 STTLAEIPRTYMVKKGIPLFN---------YSRKVLVFESRTALFPK------VGLLQWF 103
Query: 1900 LTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD 1959
+ F + W AR + + A S++ +I+G GDRH +NIL D TTG H+DF F
Sbjct: 104 VKHFPDAEEWGEARKNFVRSCAGMSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCFP 163
Query: 1960 KGLLLEKPELVPFRLTQ 1976
K KPE VPFRLT+
Sbjct: 164 KAKRGPKPERVPFRLTR 180
|
Some members of this family probably do not have lipid kinase activity and are protein kinases, . Length = 233 |
| >gnl|CDD|119430 cd05170, PIKKc_SMG1, Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 154 bits (392), Expect = 2e-41
Identities = 83/270 (30%), Positives = 127/270 (47%), Gaps = 35/270 (12%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
I + IL + +PKK+ LGSDG K +L K ++DL D R+M+F +++N + +
Sbjct: 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASI 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQK-----TNP 1864
+ + R ++V PL G+++WV L + + QK NP
Sbjct: 61 KDQESPRFRARHYSVTPLGPRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNP 120
Query: 1865 QIKRIY----DQFQGKIPEDEMLKTKILPMFPP-----------VFH-------KWFLT- 1901
QI I D F KI LK L + V K L
Sbjct: 121 QIPGIVPRPSDLFYNKI--TPALKAHGLSLDVSRRDWPLSVLRQVLDELMQETPKDLLAR 178
Query: 1902 ----TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCL 1957
+ + + W+ YA +TAV SM+G+++GLGDRH +N+L D TG+ VH+D++
Sbjct: 179 ELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVC 238
Query: 1958 FDKGLLLEKPELVPFRLTQ-VRKSYGLCAM 1986
F+KG L PE VPFR+TQ + + GL +
Sbjct: 239 FEKGKSLRIPEKVPFRMTQNIETALGLTGV 268
|
SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by genome mutations and by errors during transcription and splicing. SMG-1 phosphorylates Upf1, another central component of NMD, at the C-terminus upon recognition of PTCs. The phosphorylation/dephosphorylation cycle of Upf1 is essential for promoting NMD. Length = 307 |
| >gnl|CDD|119432 cd05172, PIKKc_DNA-PK, DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 6e-40
Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 44/229 (19%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
I G + +LSSL++PK+I + GSD + PFL K +DLR+D R+ + ++N +L++
Sbjct: 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQD 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRI 1869
R+R L +RT+ VIP+T G++EW+ +T L+ IL
Sbjct: 61 TACRQRALQLRTYQVIPMTPRFGLIEWLENTTPLKEIL---------------------- 98
Query: 1870 YDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHI 1929
++++L+ ++ M + P A+ R +A + A + I
Sbjct: 99 ---------KNDLLRRALVEM------------SASPEAFLSLRDHFAKSLAAMCVSHWI 137
Query: 1930 VGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL-LLEKPELVPFRLTQV 1977
+G+GDRH N L D TG V +DF F L PEL+PFRLT
Sbjct: 138 LGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQ 186
|
DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double strand breaks (DSBs) by joining together two free DNA ends of little homology. DNA-PK functions as a molecular sensor for DNA damage that enhances the signal via phosphorylation of downstream targets. It may also act as a protein scaffold that aids the localization of DNA repair proteins to the site of DNA damage. DNA-PK also plays a role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Length = 235 |
| >gnl|CDD|191935 pfam08064, UME, UME (NUC010) domain | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-25
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 488 LPGFLRNHFVGLLNSIDRKMLHAE---DLSLQKQALKRIEILIEMIGSHLTTYVPKILVL 544
+ FL+ HF+G+L + ++ + +K+AL+ IE LI++ G H+++ P+I+
Sbjct: 1 VADFLQEHFLGILTRFSEVLHDSKGRKPIFEKKRALRSIEELIKLGGKHISSARPQIMAC 60
Query: 545 LMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLER 594
L A+ L+ E L H FI + ++ Q F A++P +
Sbjct: 61 LQSALEIPELRSEALRCWHVFI---KSLDEEELGPLLDQTFVAILPLWDT 107
|
This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1. Length = 107 |
| >gnl|CDD|214825 smart00802, UME, Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-21
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 488 LPGFLRNHFVGLLNSIDRKMLHAE---DLSLQKQALKRIEILIEMIGSHLTTYVPKILVL 544
L FL++HF+G+L + + + +K+AL+ I LI+++G H+++ +P+I+
Sbjct: 1 LADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMAC 60
Query: 545 LMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLER 594
L A+ L+ L H I + ++ Q+FAA++P
Sbjct: 61 LQSALEIPELRSLALRCWHVLI---KTLKEEELGPLLDQIFAAILPLWPT 107
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. Length = 107 |
| >gnl|CDD|119423 cd05163, TRRAP, TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 4e-14
Identities = 55/212 (25%), Positives = 89/212 (41%), Gaps = 31/212 (14%)
Query: 1767 KKIVLLGSDGIKRPFLCKPKDDL--RKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAV 1824
+++ + G DG PFL + R++ R+++ +N +LSK E+RRR L V
Sbjct: 19 RRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLV 78
Query: 1825 IPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLK 1884
+PL+ +VE LQ+IY K IY++ Q + D +LK
Sbjct: 79 VPLSPQIRLVE----DDPSYISLQEIY-------EDKLE-----IYNEIQKDMVPDTILK 122
Query: 1885 TKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDS 1944
IL FP W R + + A+ S + +I+ + +R+ + I
Sbjct: 123 NYILSTFPTYQDYWLF------------RKQFTYQLALLSFMTYILSINNRNPDKIFISR 170
Query: 1945 TTGDCVHVDFS-CLFDKGLLLEKPELVPFRLT 1975
TG+ D + + L E VPFRLT
Sbjct: 171 DTGNVYQSDLLPSINNNKPLFHNNEPVPFRLT 202
|
TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replication, and DNA repair. TRRAP also exists in non-HAT complexes such as the p400 and MRN complexes, which are implicated in ATP-dependent remodeling and DNA repair, respectively. Length = 253 |
| >gnl|CDD|119426 cd05166, PI3Kc_II, Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 48/202 (23%), Positives = 78/202 (38%), Gaps = 41/202 (20%)
Query: 1755 DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPES 1812
E +S P KI + +D G + K DDLR+D +++ MIN ++ K
Sbjct: 65 RECSYFNSNALPLKISFVNADPMGENISVIFKAGDDLRQDMLVLQ---MIN-IMDKIWLQ 120
Query: 1813 RRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQ 1872
L + TF + D GMVE VP LR I Q G F
Sbjct: 121 EGLDLRMITFRCLSTGYDRGMVELVPDAETLRKI-QVEEGLTGSF--------------- 164
Query: 1873 FQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGL 1932
+D + KW + + +A + ++ A + +++G+
Sbjct: 165 ------KDRPIA------------KWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGI 206
Query: 1933 GDRHGENILFDSTTGDCVHVDF 1954
DRH +NI+ + +G H+DF
Sbjct: 207 CDRHNDNIML-TKSGHMFHIDF 227
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a Phox homology (PX) domain, and a second C2 domain at the C-terminus. They are activated by a variety of stimuli including chemokines, cytokines, lysophosphatidic acid (LPA), insulin, and tyrosine kinase receptors. Length = 353 |
| >gnl|CDD|119428 cd05168, PI4Kc_III_beta, Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 3e-07
Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 62/208 (29%)
Query: 1779 RPFLCKPKDDLRKDSRMMEFTAMINRLLSKYP---ESRRRKLYIRTFAVIPLTEDCGMVE 1835
R + K DDLR++ + +L+ ++ + L++R + ++ + + G++E
Sbjct: 33 RSVIVKTGDDLRQE-------LLAMQLIQQFDRIFKEEGLPLWLRPYEILVTSSNSGLIE 85
Query: 1836 WVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVF 1895
+P T + ++ ++K + K + D
Sbjct: 86 TIPDTVSIDSL------------KKKLTSKFKSLLD------------------------ 109
Query: 1896 HKWFLTTFSEPAAWFR-ARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDF 1954
+F TF +P+ FR A+ + + A +S++ +++ + DRH NIL D+ G +H+DF
Sbjct: 110 --FFKKTFGDPSERFREAQKNFIESLAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDF 166
Query: 1955 SCLFDKGLLLE-KP-----ELVPFRLTQ 1976
G +L P E PF+LTQ
Sbjct: 167 ------GFMLSNSPGNVGFETAPFKLTQ 188
|
PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KIIIbeta also functions in the genesis, transport, and exocytosis of synaptic vesicles. The Drosophila PI4KIIIbeta is essential for cytokinesis during spermatogenesis. Length = 293 |
| >gnl|CDD|119427 cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-07
Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 53/198 (26%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DD R+D ++ ++ + +S LY+ + V+ CG++E VP+++
Sbjct: 59 KVGDDCRQDMLALQLISLFKNIF----QSAGLDLYLFPYRVVATGPGCGVIEVVPNSKSR 114
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
D++ +T ++ ++F + +
Sbjct: 115 ------------------------------------DQIGRTTDNGLY-----EYFTSKY 133
Query: 1904 --SEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK- 1960
A+ +AR + + A +S++ +++ + DRH NI+ D G +H+DF +F+
Sbjct: 134 GDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEIS 192
Query: 1961 --GLLLEKPELVPFRLTQ 1976
G L K E PF+LT+
Sbjct: 193 PGGNL--KFESAPFKLTK 208
|
PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling molecule. Vertebrate PI4KIIIalpha is also part of a signaling complex associated with P2X7 ion channels. The yeast homolog, Stt4p, is also important in regulating the conversion of phosphatidylserine to phosphatidylethanolamine at the ER and Golgi interface. Mammalian PI4KIIIalpha is highly expressed in the nervous system. Length = 311 |
| >gnl|CDD|119419 cd00893, PI4Kc_III, Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-06
Identities = 53/237 (22%), Positives = 94/237 (39%), Gaps = 61/237 (25%)
Query: 1746 DLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRL 1805
P I A + L + L S I F+ K DDLR+D + I
Sbjct: 6 ISPKILQSALKIPYLELKK------LTDSTLINSEFIVKCGDDLRQDILATQ----IITE 55
Query: 1806 LSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQ 1865
L K E L++ + V+P+++ G++E++P++ + I + Q
Sbjct: 56 LQKIFELMFLDLWLNPYLVLPVSKTGGIIEFIPNSISIHEIKKQ---------------Q 100
Query: 1866 IKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSM 1925
I +YD F + + + +E A+ +AR + + A +S+
Sbjct: 101 INSLYDYFL----------------------ELYGSYTTE--AFLQARYNFIESMAGYSL 136
Query: 1926 VGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKP------ELVPFRLTQ 1976
+ +++ + DRH NIL DS G +H+DF + D P E F+ T+
Sbjct: 137 LCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILD-----SSPGNNLGFEPAAFKFTK 187
|
PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. Length = 289 |
| >gnl|CDD|119422 cd00896, PI3Kc_III, Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 9e-06
Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 1750 ISGI-ADEAEILSSLQRPKKIVLLGSDGIKR---PFLCKPKDDLRKDSRMMEFTAMINRL 1805
I+GI +E+ + S P K+ G + P + K DDLR+D +++ ++++RL
Sbjct: 63 ITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRL 122
Query: 1806 LSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQ 1865
L K L + + V+ + G+VE++P + L +IL+
Sbjct: 123 LKKE----NLDLKLTPYKVLATSPTDGLVEFIP-SVTLASILKK---------------- 161
Query: 1866 IKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSM 1925
I + + P+D P + TF + A Y +
Sbjct: 162 YGGILNYLRKLNPDDGG---------PLGISPEVMDTFVKSCA------GY-------CV 199
Query: 1926 VGHIVGLGDRHGENILFDSTTGDCVHVDF 1954
+ +I+G+GDRH +N+L + G H+DF
Sbjct: 200 ITYILGVGDRHLDNLLL-TKDGKLFHIDF 227
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. They phosphorylate only the substrate PtdIns. They interact with a regulatory subunit, Vps15, to form a membrane-associated complex. Class III PI3Ks are involved in protein and vesicular trafficking and sorting, autophagy, trimeric G-protein signaling, and phagocytosis. Length = 350 |
| >gnl|CDD|119417 cd00891, PI3Kc, Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-05
Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 42/228 (18%)
Query: 1753 IADEAEILSSLQRPKKIVLLGSDGIKRPFLC--KPKDDLRKDSRMMEFTAMINRLLSKYP 1810
I ++ +++ S ++P +V +D P K DDLR+D T + RL+ K
Sbjct: 63 IIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVGDDLRQDM----LTLQMIRLMDKIW 118
Query: 1811 ESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIY 1870
+ L + + I + GM+E VP++ + I + G F +
Sbjct: 119 KKEGLDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGGAFKD-------NPLM 171
Query: 1871 DQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIV 1930
+ + K +E + +A + ++ A + + +++
Sbjct: 172 NWLKKKNKGEEDYE--------------------------KAVENFTYSCAGYCVATYVL 205
Query: 1931 GLGDRHGENILFDSTTGDCVHVDFSCLF--DKGLLLEKPELVPFRLTQ 1976
G+GDRH +NI+ + TG H+DF K K E PF LT
Sbjct: 206 GIGDRHNDNIML-TKTGHLFHIDFGHFLGNFKKKFGIKRERAPFVLTP 252
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class II PI3Ks comprise three catalytic isoforms that do not associate with any regulatory subunits. They selectively use PtdIns as a susbtrate to produce PtsIns(3)P. Length = 352 |
| >gnl|CDD|119436 cd05177, PI3Kc_C2_gamma, Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 42/208 (20%)
Query: 1750 ISGI-ADEAEILSSLQRPKKIVLLGSDGIKR--PFLCKPKDDLRKDSRMMEFTAMINRLL 1806
+ GI AD +S P KI + ++ + + + K DDLR+D +++ +++ +
Sbjct: 60 VKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIW 119
Query: 1807 SKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQI 1866
+ + + + + + G+V+ VP L
Sbjct: 120 LQ----EGLDMQMIIYRCLSTGKTQGLVQMVPDAVTL----------------------- 152
Query: 1867 KRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMV 1926
KI + L I P+ KWF + +A + H+ A W +V
Sbjct: 153 --------AKIHRESGL---IGPLKENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVV 201
Query: 1927 GHIVGLGDRHGENILFDSTTGDCVHVDF 1954
I+G+ DRH +NI+ + +G H+DF
Sbjct: 202 TFILGVCDRHNDNIML-THSGHMFHIDF 228
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a Phox homology (PX) domain, and a second C2 domain at the C-terminus. The class II gamma isoform, PI3K-C2gamma, is expressed in the liver, breast, and prostate. It's biological function remains unknown. Length = 354 |
| >gnl|CDD|119435 cd05176, PI3Kc_C2_alpha, Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 43/220 (19%)
Query: 1760 LSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKL 1817
SS P KI L+ +D G + + K +DLR+D ++ +++++ + L
Sbjct: 70 FSSNAVPLKIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQ----EGLDL 125
Query: 1818 YIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKI 1877
+ F + +D GMVE VP + LR I Q Y G F + K + R Y+
Sbjct: 126 RMVIFKCLSTGKDRGMVELVPASETLRKI-QVEYGVTGSF-KDKPLAEWLRKYNP----- 178
Query: 1878 PEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHG 1937
E+E + +A + ++ A + +++G+ DRH
Sbjct: 179 AEEE---------------------------YEKASENFIYSCAGCCVATYVLGICDRHN 211
Query: 1938 ENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLT 1975
+NI+ S TG H+DF + K + PF LT
Sbjct: 212 DNIMLRS-TGHMFHIDFGKFLGHAQMFGSFKRDRAPFVLT 250
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a Phox homology (PX) domain, and a second C2 domain at the C-terminus. The class II alpha isoform, PI3K-C2alpha, plays key roles in clathrin assembly and clathrin-mediated membrane trafficking, insulin signaling, vascular smooth muscle contraction, and the priming of neurosecretory granule exocytosis. Length = 353 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2037 | |||
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 100.0 | |
| KOG0892 | 2806 | consensus Protein kinase ATM/Tel1, involved in tel | 100.0 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 100.0 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 100.0 | |
| COG5032 | 2105 | TEL1 Phosphatidylinositol kinase and protein kinas | 100.0 | |
| cd05171 | 279 | PIKKc_ATM Ataxia telangiectasia mutated (ATM), cat | 100.0 | |
| cd05169 | 280 | PIKKc_TOR TOR (Target of rapamycin), catalytic dom | 100.0 | |
| cd05170 | 307 | PIKKc_SMG1 Suppressor of morphogenetic effect on g | 100.0 | |
| cd05172 | 235 | PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK) | 100.0 | |
| cd05163 | 253 | TRRAP TRansformation/tRanscription domain-Associat | 100.0 | |
| cd00892 | 237 | PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-rela | 100.0 | |
| cd05164 | 222 | PIKKc Phosphoinositide 3-kinase-related protein ki | 100.0 | |
| cd00142 | 219 | PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like f | 100.0 | |
| cd00891 | 352 | PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic | 100.0 | |
| cd05166 | 353 | PI3Kc_II Phosphoinositide 3-kinase (PI3K), class I | 100.0 | |
| cd05165 | 366 | PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, | 100.0 | |
| cd05168 | 293 | PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), T | 100.0 | |
| cd05177 | 354 | PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), c | 100.0 | |
| cd00896 | 350 | PI3Kc_III Phosphoinositide 3-kinase (PI3K), class | 100.0 | |
| cd00894 | 365 | PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), c | 100.0 | |
| cd05174 | 361 | PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), c | 100.0 | |
| cd05176 | 353 | PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), c | 100.0 | |
| cd05173 | 362 | PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), cl | 100.0 | |
| cd05167 | 311 | PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), | 100.0 | |
| smart00146 | 202 | PI3Kc Phosphoinositide 3-kinase, catalytic domain. | 100.0 | |
| cd00893 | 289 | PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type I | 100.0 | |
| cd00895 | 354 | PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), cl | 100.0 | |
| cd05175 | 366 | PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), c | 100.0 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 100.0 | |
| PF00454 | 235 | PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kina | 100.0 | |
| KOG0903 | 847 | consensus Phosphatidylinositol 4-kinase, involved | 100.0 | |
| KOG0906 | 843 | consensus Phosphatidylinositol 3-kinase VPS34, inv | 99.97 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 99.97 | |
| KOG0902 | 1803 | consensus Phosphatidylinositol 4-kinase [Signal tr | 99.97 | |
| KOG0904 | 1076 | consensus Phosphatidylinositol 3-kinase catalytic | 99.95 | |
| PTZ00303 | 1374 | phosphatidylinositol kinase; Provisional | 99.91 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 99.91 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 99.88 | |
| COG5032 | 2105 | TEL1 Phosphatidylinositol kinase and protein kinas | 98.69 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.38 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.29 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.25 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.01 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 97.75 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.69 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 97.68 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 97.5 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 97.46 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 97.42 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 97.39 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.26 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.12 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.1 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.08 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 96.89 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 96.74 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.68 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 96.57 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 96.4 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 96.34 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 96.22 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 96.17 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 96.06 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 95.8 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 95.44 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.35 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 95.12 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 95.11 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 95.11 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 94.72 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 94.66 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 94.51 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 94.51 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 94.42 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 94.18 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 94.12 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 94.11 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 93.97 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 93.97 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 93.49 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 93.4 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 93.19 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 92.95 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 92.86 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 92.81 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 92.7 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 92.62 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 92.56 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 92.53 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 92.11 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 91.83 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 91.78 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 91.66 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 91.33 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 90.97 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 90.84 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 90.47 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 90.19 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 90.13 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.93 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 89.89 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 89.86 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 89.36 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 89.33 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 89.17 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 88.28 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 88.2 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 88.02 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 87.99 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 87.41 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 87.18 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 87.09 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 86.79 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 86.61 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 86.57 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 86.1 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 85.62 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 85.47 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 85.46 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 85.36 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 84.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 84.84 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 84.41 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 84.26 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 83.91 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 83.9 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 83.58 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 82.71 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 81.83 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 81.73 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 80.99 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 80.67 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 80.61 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 80.09 |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-251 Score=2455.37 Aligned_cols=1806 Identities=36% Similarity=0.571 Sum_probs=1510.1
Q ss_pred hhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccccccccccc
Q 000149 20 VRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILS 99 (2037)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (2037)
++.-|-+|+| ..++-+....||.+|+.+..+....++|-+++.+||+.|+++.. ....+...|+.|... .....
T Consensus 444 ~~~v~~~sl~---~~~~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~v~llC~~~~~--~~~~~~t~~~~~~~~-~~~~~ 517 (2382)
T KOG0890|consen 444 IQEVAEMSLP---SLSQYIRILNMFEKLLLKLSDDLQNIKKDFAQILVFLLCTKQGK--ENYSEKTITKYFLCH-GLQKL 517 (2382)
T ss_pred HHHHHHhccc---hhcccchhccccHHHHHHhcccccccchhhhhheEEEeeccccc--cCchhhhhhhhhhcc-ccccc
Confidence 8888999999 55666667788888999999999999999999999999999754 566788899988872 22222
Q ss_pred ccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccC
Q 000149 100 QTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHG 179 (2037)
Q Consensus 100 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~ 179 (2037)
.. +.|+.|++|++.. +...-.+....+......+..++... +...++..++|++++++..++..+-|.
T Consensus 518 ~~----l~~~~l~~c~~~~----~~~~~~~~~~~~~~i~~~~~~d~~~~----~~~~~n~~~~e~~~~~~~~~r~~ll~t 585 (2382)
T KOG0890|consen 518 FC----LAANSLSKCKKEL----EEAFLSPPSLEMVKIDYEFLLDLFFG----INQHLNTFSKETQVSFVETIRTMLLHT 585 (2382)
T ss_pred cc----cccchhccCcccc----hhhhcCCCcHHHHhhhhhhccchHHh----HHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 22 9999999999432 12222222222333344444554443 677889999999999999999999999
Q ss_pred CchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCCh--hH
Q 000149 180 TRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDP--LI 257 (2037)
Q Consensus 180 ~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i 257 (2037)
+....+.++.. .+ .+.+ ..|+.+...++..+.+.|.+.-.+...+. ...++.-+.+.....+|- -.
T Consensus 586 t~~~~~~~~~~------~~-~~~~----~~Fle~~~~l~~~~~~~~~~~~~~~~~k~-~~~~~~ll~~~~~~~~d~~~l~ 653 (2382)
T KOG0890|consen 586 TSKIVLFARSS------II-VALD----IGFLEQLNNLVRVEILVCLRSELTVTLKN-LRMYTNLLEISFAALSDDAALF 653 (2382)
T ss_pred Ccceeeeecch------hh-hccc----hHHHHhhhhhHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHhhcchhHHH
Confidence 97765555444 12 3444 77999999988888888877766544443 566777777766666663 67
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHH-HH
Q 000149 258 LETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDY-LS 336 (2037)
Q Consensus 258 ~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~-~~ 336 (2037)
.++.|..+-..+.++.+..|+|..++-+++.|+++.|..++ . .+++..++++..++...+|.- ++
T Consensus 654 i~~~L~~~~s~~~~~~v~~~lf~~~~~~~a~q~~~~~~~~s-~-------------~~~~~~~l~~~~~~~~~i~~~~~~ 719 (2382)
T KOG0890|consen 654 IHHTLHFVLSARISSVVKSELFLSILGLLALQNVKINVNVS-T-------------VGNKAEALGYTSKIYLDIFQRDIL 719 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeee-c-------------chhHHHHhhhHHHHHHHHHHhhhh
Confidence 78888888888888999999999999999999999999999 3 344556667776665566665 67
Q ss_pred HhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc
Q 000149 337 VRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ 416 (2037)
Q Consensus 337 ~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~ 416 (2037)
-+..++|..+.+++....+...+.+++.+++++||.++....+ ++..+++............++.+ ++.|+++++++
T Consensus 720 ~~~~~~~n~~~~~~~~~~~~~~~~~~r~~~~~~Lp~~~~~~~~--~a~~~vr~~~~~i~~l~~~~~~n-~~~i~~~~~~t 796 (2382)
T KOG0890|consen 720 NRLFSDPNSASEFAPAYVEHEGRELLRCLLAVVLPDLNFPNQK--IAVAIVRPLLKYISTLSSLLLIN-LTLIYTHLLCT 796 (2382)
T ss_pred hHHHhhhhhhhhhcchhhccchHHHHHHHHHHhcchhhccccH--HHHHHHHHhhhhhhHHHHHHhcC-chhhhchHhhh
Confidence 7788999999999998888889999999999999999999765 45666666666655555555555 99999999999
Q ss_pred ccHHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHH
Q 000149 417 ADERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHF 496 (2037)
Q Consensus 417 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 496 (2037)
+.++...+++.++..+.++++++.+.+..+..+.||+++......-+..+...+-.+.+..-.+..+.++.+.+|+++|+
T Consensus 797 ~~~~~~~sv~~l~~~~~~s~l~~~~~~e~~~~~~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~e~~~~fl~~~l 876 (2382)
T KOG0890|consen 797 EEPNNLESVISLLKLRIGSDLRESLISETFALLVELLRFYNNNFTPEKRKFSSRKCDFIDEDIRTLISSELFQDFLQNHL 876 (2382)
T ss_pred ccchhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhccCcHHHHhhhhhhhhhhhccchhcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999777665544432222223333222345566788999999999
Q ss_pred HHHHHHhhhhhcCCCC-hHHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHH-HhcCCCcchhhhHHHHHHHHHhccCC
Q 000149 497 VGLLNSIDRKMLHAED-LSLQKQALKRIEILIEMIGS-HLTTYVPKILVLLMH-AINKESLQCEGLSVLHFFIEQLSRVS 573 (2037)
Q Consensus 497 LGil~~~~~~l~~~~~-~~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~L~s-aL~~~~L~~~~l~~W~~fv~~L~~~~ 573 (2037)
||++++|+.++++++. ...|++++.+|+.+|++||+ +|++++|||+.+|++ ++..++++..|++||+.|++.+.+.
T Consensus 877 lgil~~f~~~l~~~~~~~~~k~~tl~~I~~~i~~~g~~~v~~~~~~i~~~L~~~~~~~~~l~~~~~~~w~~f~r~l~~~- 955 (2382)
T KOG0890|consen 877 LGILAVFSSRLLEPSTIIEQKKKTLKGIKKLISFMGSKAVSTRLPKIEFLLQFGTLFKDELRFLALKAWHIFIRILNDN- 955 (2382)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHhHHHHHhhccHHHHHHHhHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhhh-
Confidence 9999999999988765 45789999999999999995 999999999999999 7999999999999999999999874
Q ss_pred CcchhhHHHH-HHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCC
Q 000149 574 PSSTKHVISQ-VFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMT 652 (2037)
Q Consensus 574 ~~~l~~ll~~-i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~ 652 (2037)
..+++++. ++++++|+++.. ..+.+..|+++|+.+|++.+...+.++|.+|++|++.+....++.+|+..+
T Consensus 956 --~~~~~~~~~i~~~l~p~l~~~------~~~~v~~i~~~i~~~~~d~i~~~~~~~~~l~~~p~~~~~~~~~~~~r~~~~ 1027 (2382)
T KOG0890|consen 956 --EKSDILDRNIIAALFPLLEHI------ELNLVSSILDFISLDNRDNIQILKSDIPILPSIPELGNLKAAIQEARGLLS 1027 (2382)
T ss_pred --hhcchhhhHHHHHHHHHhccc------cHHHHHHHHHHHHHhhHHHHHhhhccccccCCchHHHHHHHHHHHHHhhcc
Confidence 45566666 899999999621 258899999999999999999999999999999999999999999998766
Q ss_pred ---HHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHH
Q 000149 653 ---LKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLK 729 (2037)
Q Consensus 653 ---l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~ 729 (2037)
+.++++.|++.+.|||..||++++++|+.++.+++ ++......+.....+.+++|+++||+||.++. .+++
T Consensus 1028 ~~~l~~~l~~~~~~~~~enl~vr~~~l~~l~~~~~k~~-e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~-----~~~~ 1101 (2382)
T KOG0890|consen 1028 EDDLDDQLRDFMKKLKHENLPVRVEKLQDLEFLIGKNR-EKLDVLALKELGPEEDLSQLLTVLLDGCQKKT-----SQLE 1101 (2382)
T ss_pred ccchhhhhHHHHHHhHhhhhHHHHHHHHHHHHHHhhhh-hHhhhhhhhhcccchhHHHHHHHHHHHHHHHH-----HHHH
Confidence 78999999999999999999999999999999544 45655444333233679999999999999975 4899
Q ss_pred HHHHHhhcccCccCccccccccccc----cc---ccccCh--hhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHc
Q 000149 730 LVCADCLGALGAVDPAKVKGFSCQR----FK---IECSDD--DLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIA 800 (2037)
Q Consensus 730 ~lca~CLG~IGalDp~r~~~~~~~~----~~---~~~~~~--~F~~~ll~~~Lv~af~s~~dt~~Q~~~AyaiQelL~~~ 800 (2037)
++||+|||+||||||++..++..+. .. .++.+. .| .++....++++|+-..|+..|+++||++||.|+..
T Consensus 1102 ~~~akcLg~lgaidp~~~~~k~q~~i~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~~~~~~~~q~~~~~~~qe~l~~~ 1180 (2382)
T KOG0890|consen 1102 ELCAKCLGELGAIDPSCHRFKEQETIPSILQVLPIECSDLPIKF-IDFAWDTLVKAFLCEPDQLKQDVVAYAIQEVLVLG 1180 (2382)
T ss_pred HHHHHHHHhhhccCchhhhhhcccccchhhhccccccCchhhhh-HHHHHHHHHHHHhcCcChhhhhHHHHHHHHHHHHh
Confidence 9999999999999999888765432 11 122222 24 57888999999999999999999999999999955
Q ss_pred CCCccccCCcchhhhhhhccccchhhhcccCCCCCcchhhchhhH-HHHHhhchhHHHHhccccccccccCC-CCCCCCC
Q 000149 801 GCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMRGR-KFWDRFSIYVKEIIAPCLTSRFQLPS-GSDSVST 878 (2037)
Q Consensus 801 g~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~W~~~p~~~~~~l~P~LtSrY~~~~-~~~~~~~ 878 (2037)
||+ +.. ...++. ++|++||+++|+++.|+|+|||+.+. .++....
T Consensus 1181 ~~~----n~e-----------------------------~~~~~~~elW~~Fp~~~k~~~~P~L~s~Y~sq~~~p~~~~k 1227 (2382)
T KOG0890|consen 1181 GSS----NIE-----------------------------PLDRGMCELWERFPNEVKEEMEPTLTSRYASQKPEPSVGEK 1227 (2382)
T ss_pred ccc----cCc-----------------------------cCCccHHHHHHHhHHHHHHHHhhcccchhccCCCCCCcccc
Confidence 554 110 001344 89999999999999999999999443 3445789
Q ss_pred CCcccCCCChHHHHHHHHHHHHhhhcCCch-hHHHHhhhhhhccHhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 000149 879 GPIYLPSMSFRRWIYYWIRKLTVHATGSRA-SIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLD 957 (2037)
Q Consensus 879 ~Pi~~~~~sy~~Wl~~w~~~Ll~~~~~~~~-~iF~~c~~ii~~D~~~a~fLLPylvl~vl~~~~~~~~~~i~~Ei~~VL~ 957 (2037)
+|||++...|++|+..|+.+|+.++.++.+ +||++|+.++++|..++.|||||++++|++.+++++|+.|.+||++||+
T Consensus 1228 ~Piy~~~lg~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~eil~vl~ 1307 (2382)
T KOG0890|consen 1228 KPIYKSSLGYREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEILSVLD 1307 (2382)
T ss_pred cccccccccHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHh
Confidence 999999999999999999999999887765 7999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcccCCCcchhhHHHHHHHHHHhhHHHHHHHHHHhhhhhcchhcccCCCCCCCCCcchhhHHHHHhhhhhhh
Q 000149 958 AAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGL 1037 (2037)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~q~vF~vlD~l~~W~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~f 1037 (2037)
++.++.-+ + ... ...++|+|+||+++||+++|.|+++|.........+|-.+.. .+....+..+ +.+..|++|
T Consensus 1308 ~~~~~t~n-s-~~~-~~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~~sk~~R~~-~~~~~~Tt~~---~~~~~v~~f 1380 (2382)
T KOG0890|consen 1308 EAATNTIN-S-RGT-ASDRLCVQFVFYVLDYLYQWARHKKQELAEKKKIWSKVNRFW-KSIMSWTTTG---EDIEGVQSF 1380 (2382)
T ss_pred cccccccc-c-ccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhh-eeeeccccCC---CchhhhHHH
Confidence 98665221 1 111 222899999999999999999999988765433222222200 0111111111 236789999
Q ss_pred cCCCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHH-HhccCC
Q 000149 1038 LSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR-LHKSLS 1116 (2037)
Q Consensus 1038 L~~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~-~r~~~~ 1116 (2037)
|+.||..+||.++++|++|+||+||+|+| +. +++.....+..+..||.+|+.|+||||++|+++ +.+.++
T Consensus 1381 L~~iP~~tLa~aSfrc~~y~RalmylEs~-~~--------~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s 1451 (2382)
T KOG0890|consen 1381 LDLIPSDTLARASFRCKAYARALMYLESH-RS--------TEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS 1451 (2382)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHh-cc--------ccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc
Confidence 99999999999999999999999999998 21 122222333456667779999999999999999 567899
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
+.+||+.||+.|+|.+|++|||+++|.+|++..++.|+++|+.++|++++++++++|+..+.+++.++|+.+++||||++
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHhhcccccCccccCCCCCcchHHH-HHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchh-hHHhhhHHH
Q 000149 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMD-VAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMD-SYTRAYPFI 1274 (2037)
Q Consensus 1197 g~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~-l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~e-Sy~r~y~~l 1274 (2037)
|+||.+++++. +. ...+|... +|+++++..++|.-.+.+.|+.+|..++.++++.+.+ ||.++|+++
T Consensus 1532 ~qwD~~e~~l~--~~---------n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1532 SQWDLLESYLS--DR---------NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred cchhhhhhhhh--cc---------cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHH
Confidence 99999999987 33 34678888 9999999999999999999999999999999998887 999999999
Q ss_pred HHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCC---CCCCchhHHH
Q 000149 1275 VKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGA---SGLGAEVGNC 1351 (2037)
Q Consensus 1275 ~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~---~~l~~~~~~~ 1351 (2037)
++||++.|+++++..+...+....+. .--.+|..|++.++++++.+||||++||.+++. .+++.++|+|
T Consensus 1601 ~kLH~l~el~~~~~~l~~~s~~~~s~--------~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~ 1672 (2382)
T KOG0890|consen 1601 MKLHLLLELENSIEELKKVSYDEDSA--------NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGEC 1672 (2382)
T ss_pred HHHHHHHHHHHHHHHhhccCcccccc--------ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHH
Confidence 99999999999998876543222111 111689999999999999999999999999876 3678999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCC
Q 000149 1352 WLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVP 1431 (2037)
Q Consensus 1352 WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~ 1431 (2037)
|+++|++|||+|++|+|++||++|..+..|++.+|+|||+|++|++++|+.+||+.++.+..+..+ |
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~-------------~ 1739 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHT-------------P 1739 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccC-------------C
Confidence 999999999999999999999999999999999999999999999999999999999754333221 1
Q ss_pred CCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhc
Q 000149 1432 LNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEEN 1511 (2037)
Q Consensus 1432 ~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~ 1511 (2037)
-++. +....-..-+|+.|++|+|++++++..+++++++|+.|++.+|.||++||++|+|||+++.+.+..+.+
T Consensus 1740 ~~~~------p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E- 1812 (2382)
T KOG0890|consen 1740 YTDT------PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKME- 1812 (2382)
T ss_pred cccc------chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhccccc-
Confidence 1111 111112244689999999999999999999999999999999999999999999999999654422111
Q ss_pred ccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHH-HHHHHHHHHHhhcCCC
Q 000149 1512 SEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKN-VNGKVMSIMRGCLKDL 1590 (2037)
Q Consensus 1512 ~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~l 1590 (2037)
..| ....|+. +|.+|++|+.+|++++||+||||+|||||+|......+...++++.. ....|++.+++++..+
T Consensus 1813 -~~g----~~~~~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~l 1886 (2382)
T KOG0890|consen 1813 -KSG----RVLSLLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHL 1886 (2382)
T ss_pred -ccc----cHHHHHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhC
Confidence 111 2334776 89999999999999999999999999999998655444444555433 3567999999999999
Q ss_pred CchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCCCCCchhh
Q 000149 1591 PAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANN 1670 (2037)
Q Consensus 1591 P~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~~~~~~~~ 1670 (2037)
|+|+|||+++||+|||||||++|+.++++||.+|+.+||||++|++++++||+++.|++||++|+++.+...+. ..+
T Consensus 1887 p~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~---~~~ 1963 (2382)
T KOG0890|consen 1887 PTYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQTLWQSAALSKSNVPSRVERCKEILTKSRRQKPD---YKK 1963 (2382)
T ss_pred cchHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcc---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876553 457
Q ss_pred HHHHHHHHHHHHHHHHhccCCccccccchhhhhHH-HHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCCcE
Q 000149 1671 LFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSA-LKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPT 1749 (2037)
Q Consensus 1671 li~~~~~l~~~Li~l~~~~~~~~~~~~~ls~~f~~-l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~ 1749 (2037)
++.++..++++|+++|+++++...+..+++.+|+. .....+..+++|+++.+.+++|..+.+......+.||+ +++++
T Consensus 1964 l~~da~~lTe~L~~lcn~~v~~ss~~~sl~t~F~kl~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~-~~~~~ 2042 (2382)
T KOG0890|consen 1964 LLSDAYDLTEKLTNLCNKKVNSSSKVLSLKTDFRKLVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQ-SHLPY 2042 (2382)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccHHHHHHHhccccChhhhhhhHhhhcccccccccCcccccCCCCCCC-Ccchh
Confidence 89999999999999999999988888999999983 23344678999999999999999887654334455666 48899
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|+|+|+|++|+||||||+++|||||.|+|||||+||||||+|+|||+.+||++|+||.|+|||+|+||||+|+||++
T Consensus 2043 IsgF~d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCKpKDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLne 2122 (2382)
T KOG0890|consen 2043 ISGFSDEVKILNSLQKPKKIKLRGSDGKIYPFLCKPKDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNE 2122 (2382)
T ss_pred hhcchHHHHHHHhccCCeEEEEEcCCCCEeEEEeCchhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHH
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w 1909 (2037)
+||+||||+|+.|+++|+.++|..+|.+...+ ......+..+ .+...+.+.|++.++++|||||++||.++||+|.+|
T Consensus 2123 eCGiIEWv~nt~slR~IL~klY~~rg~~~~~~-~l~~~~~~~~-~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW 2200 (2382)
T KOG0890|consen 2123 ECGIIEWVPNTASLREILDKLYMTRGKWMIKK-QLRSVHLKKQ-MAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSW 2200 (2382)
T ss_pred ccceEEecCCcchHHHHHHHHHHhccccchhh-HHHHhcCcHh-hcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHH
Confidence 99999999999999999999998888776432 1111111111 122335678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhh
Q 000149 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHF 1988 (2037)
Q Consensus 1910 ~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~ 1988 (2037)
|.+|++|+||+||||||||||||||||+||||||..||++|||||+|+|+||++|++||.||||||||||| ||+.|.||
T Consensus 2201 ~~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILFDs~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG 2280 (2382)
T KOG0890|consen 2201 FASRNNYARTTAVMSMVGYILGLGDRHGENILFDSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEG 2280 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccceeeecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999999
|
|
| >KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-90 Score=921.16 Aligned_cols=1253 Identities=19% Similarity=0.228 Sum_probs=794.9
Q ss_pred HHHHHHHHHHH--hHHHHHhhcccCCCCCCchhh---HHHHHHHHHhcCCCCHHHHHHHHHhhcc----C-CChhHHHHH
Q 000149 606 VVKILEDLVLK--NRAILKQHIHEFPLLPSIAAL---TEVNKAIQEARGPMTLKDQLLAAVDGLN----H-ENLNVRYMV 675 (2037)
Q Consensus 606 ~~~il~~Li~~--n~~~L~~~i~~lp~Lp~ip~L---~~v~~~l~~~r~~~~l~~~l~~~~~rl~----~-en~~Vr~~a 675 (2037)
...+..+...+ ..+.+...+..+-+ |+++.. -++-.+++..|+.+...+.+..|+..-. + ++.-++...
T Consensus 1296 ~l~~~~~~~~d~~kn~~i~~~~~lf~~-~~~~~~~~~~~~~~~~~~tr~~~s~l~~~~~lL~~~~~~~~~~~~~~~~f~~ 1374 (2806)
T KOG0892|consen 1296 RLAIGKLFATDEEKNETISFRICLFLP-FSDTFIFSNYRLMIHLRITRQHLSALTELSLLLGIARFHLKKLKPSFTDFDK 1374 (2806)
T ss_pred hHHHHHHHhhhhhhcchhhhhhhhccC-chhHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccccCcccchHHH
Confidence 34444444444 23333333333322 344443 3445666778888888888877764322 1 122348889
Q ss_pred HHHHHHHHhhcHHHHHHHHhccCC-CCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCccccccccccc
Q 000149 676 VCELSKLLKLKSEDVTALINGEAC-SDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQR 754 (2037)
Q Consensus 676 L~eL~~~L~~~~~~l~~~~~~e~~-~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~ 754 (2037)
|-+|.++.....+..++.+..+.. .+.......+-.||.............+++.+++.|+|..|.+|-+.+.......
T Consensus 1375 l~~l~~~c~~~~~~~~~~~~a~~~~~~~~~~~~~~vNLl~~~~~~~~~~~~k~i~e~~~s~~~~~~~v~vs~~~~~~~~~ 1454 (2806)
T KOG0892|consen 1375 LFSLARQCCDFKGFCYDTIKAMEDIQDFGTWKKGYVNLLLNFEYEGDGFLREQIRELRSSMTGKNDWVDVSNKLRERSAR 1454 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHhhhcccchHHhHHhhhhccccCCcchhhhhhHHHHHhcc
Confidence 999999999998888887763322 2223455566666665544333335578999999999999999988887644222
Q ss_pred cccccc-----ChhhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHcCCCccccCCcchhhhhhhccccchhhhcc
Q 000149 755 FKIECS-----DDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVAS 829 (2037)
Q Consensus 755 ~~~~~~-----~~~F~~~ll~~~Lv~af~s~~dt~~Q~~~AyaiQelL~~~g~~~~~~~~~~~~~~~~l~~~~~~~v~~~ 829 (2037)
+.-... ......+++...+..+|+--.=.+.+ +=+.|-+.+..
T Consensus 1455 ~~~~~~lkl~~~~~L~~~~~~~~~~~n~l~~~c~k~~---~~~~~~~~n~~----------------------------- 1502 (2806)
T KOG0892|consen 1455 ISMNNLLKLYFWTVLDAHFRKVLHSLNLLFWKCYKAR---SRELQDLHNKL----------------------------- 1502 (2806)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHH---HHHHHHHHHHH-----------------------------
Confidence 111000 00011112222222333222222222 01222222221
Q ss_pred cCCCCCcchhhchhhHHHHHhhchhHHHHh---ccccccccccCCCCCCCCCCCccc---------CC----CChHHHHH
Q 000149 830 GTMGSDNIHEMNMRGRKFWDRFSIYVKEII---APCLTSRFQLPSGSDSVSTGPIYL---------PS----MSFRRWIY 893 (2037)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~W~~~p~~~~~~l---~P~LtSrY~~~~~~~~~~~~Pi~~---------~~----~sy~~Wl~ 893 (2037)
.....+...|...|+.+-.+. .|.-+++-+....+..-...|++. -. .+++.|+.
T Consensus 1503 ---------~s~~t~~~~~q~~~e~v~~~~~~~q~~~~~~~~~~~e~~~~~~~~v~~~~~~~L~~~~~~~~~~s~g~~i~ 1573 (2806)
T KOG0892|consen 1503 ---------FSTDTMGWFWQKSPEIVDLVHYYPQTDPRLCDTSNYEPSKDFLWKVICQDDCSLLFKLPILLDSSIGIQIR 1573 (2806)
T ss_pred ---------HhhhhhhhHHhcCccceechhhcccCChhhhhhcccCchhhhhhchhccccceEEEEcCcccccchhhhhh
Confidence 000245668999999876543 333333222211111011112111 12 45667776
Q ss_pred HHHHH-HHhhhcCCchhHHHHhhhhhhccHhHHHhhhHHHHHHHHhcCCHHH-HHHHHHHHHHHhcccccCCCCCc-ccC
Q 000149 894 YWIRK-LTVHATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEA-RLGIAQEILSVLDAAASDHSGAS-VHG 970 (2037)
Q Consensus 894 ~w~~~-Ll~~~~~~~~~iF~~c~~ii~~D~~~a~fLLPylvl~vl~~~~~~~-~~~i~~Ei~~VL~~~~~~~~~~~-~~~ 970 (2037)
.+... ++. .+....+|..-+++.-.+...+.-..|+....++.....|. ++-...+.+.+++-..-..+... ...
T Consensus 1574 ~~~~~~n~~--~~~K~~i~~~dk~~~~~~~~~~~~~~~~~~~~il~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~~st~ 1651 (2806)
T KOG0892|consen 1574 MFFEGSNIM--ELTKNLIFPLDKITLDSFLKTLVSEEGSFIIDILQQTNNESLSNWLSEFALKLFNMCGRSSTTHSLSTY 1651 (2806)
T ss_pred hccccchhh--hhhhhhccchhHHHHHHHHHHHhhccchhHHHHHhhhhccchhhHHHHHHHHHHHHHhccCCchhhccc
Confidence 43321 111 12334567766666777778888888898888887543333 56666667777765432111000 000
Q ss_pred CCcchhhHHHHHHHHHHhhHH--------HHHHHHHHhhhhhcchhcccCCCCCCCCCcchhhHHHHHhhhhhhhcCCCC
Q 000149 971 ISGQSEVCIQAIFTLLDNLGQ--------WVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIP 1042 (2037)
Q Consensus 971 ~~~~~~~~~q~vF~vlD~l~~--------W~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~fL~~Ip 1042 (2037)
........+|.|-..++...+ |+....+.+. ++-++.+. +. |...+.
T Consensus 1652 ~~~~~t~i~~~i~~~l~~~s~~~~~~~~~~~~yi~~~~~------------~sl~~n~~---~~----------~~m~~n 1706 (2806)
T KOG0892|consen 1652 MANFSTSICQLIICLLLLESDFNPGNNLKQKDYIFELIL------------SSLLKNSN---SI----------FKMDMN 1706 (2806)
T ss_pred cccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh------------hccccchh---HH----------HHHHHH
Confidence 001111223444444444333 3333332221 11111110 11 111222
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcC------------------CCCCccccCCCCChhhHHHHHHH----HhhCC
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSG------------------SFNPAAEKSGTFEDEDVSFLMEI----YSFLD 1100 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~------------------~~n~~~~~~~~~~~~~~~~L~~I----Ya~Ld 1100 (2037)
...+++++++|+++.-+..|.|........ ...|. ....+.....||++ |..||
T Consensus 1707 i~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k----~k~~e~~~~~lqDil~~~y~~I~ 1782 (2806)
T KOG0892|consen 1707 ILKYLRRQLGCHAFNPFEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPK----NKRDELDITLLQDILKKAYESIN 1782 (2806)
T ss_pred HHHHHHHhhchhhhcchhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----cchhHHHHHHHHHHHHHHHhhCC
Confidence 223344444444444443333322111100 00000 01123566778888 99999
Q ss_pred ChHHHHHHHHHhccCChhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1101 EPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1101 EpDg~~Gi~~~r~~~~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
+||+++|+-.-... .. -+++.+|+.++|..|+..|+. ..+.|.+ ..+.|..+.|++.|....+..+.+|+....-.
T Consensus 1783 ~pD~lyG~~~~~~~-~~-~~l~~~~he~~w~~aL~~~d~-~~~~~ss-~~~~~~~~sLq~~g~~~I~~~y~~Gl~~~~~~ 1858 (2806)
T KOG0892|consen 1783 CPDALYGIKRPTSL-KN-LILITAEHEKNWPRALSYYDL-ADMYPSS-EDEAGFINSLQNAGFFHILEFYIDGLKSNDKI 1858 (2806)
T ss_pred CcchhcccCCcccc-cc-cccchhhhhhhHHHHHHhhcc-hhhccch-HhHhHHHHHHHHhcchhHHHHHhcChhhhhhh
Confidence 99999999652211 11 456789999999999999984 3355554 45689999999999999999999999877655
Q ss_pred hhhhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhh
Q 000149 1181 YKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLA 1260 (2037)
Q Consensus 1181 ~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~ 1260 (2037)
+..+.-...+|||||+|+||..-..... .. ......++..++.++.|+++++.+.+..+++.+|+..+..+.
T Consensus 1859 ~~~~~~e~~Ye~awr~g~Wd~~t~~~~~-~~-------~~~~~~y~e~~f~~l~al~ere~e~~yl~le~a~~~~v~~i~ 1930 (2806)
T KOG0892|consen 1859 DEPSNEELVYEAAWRLGKWDILTLSLVD-QN-------KTKGDYYHESLFEALRALHEREIEGSYLHLEDARNKKVLLIN 1930 (2806)
T ss_pred hhhhhhhhhHHHHHhcCCcccCCcchhh-hh-------hhhchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5555555678999999999987554311 00 112356778899999999999999999999999999999999
Q ss_pred hhchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcC
Q 000149 1261 AAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFG 1340 (2037)
Q Consensus 1261 a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~ 1340 (2037)
..+.++..--|+.+.+|+.+++++.+..+... ..+.+....+...|..-++...+.....+.+..-++.++.
T Consensus 1931 ~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~--------~~~~~~~~~~~~k~~t~~q~~~~~~~~~~~~~~d~n~l~s 2002 (2806)
T KOG0892|consen 1931 PNSEESSLSFYATLYDLQFLVTLEPIRCLQST--------ADKHQSNTDILQKWKTNLQLSSQLMECLSLLIEDRNVLLS 2002 (2806)
T ss_pred ccchHHHHHHHHHHHHHHHHhhhhhhHhhhhh--------hcchhhhhHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988775431 1122344567777888877777777666666666666554
Q ss_pred CCCCC--------chhHHHH----HHHHHHHHHcCChHHHHH---HHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHH
Q 000149 1341 ASGLG--------AEVGNCW----LQYAKLCRLAGHYETATR---AILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQ 1405 (2037)
Q Consensus 1341 ~~~l~--------~~~~~~W----L~~AklARKag~~~~A~~---aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~ 1405 (2037)
...+. +...+.. +.-.++||.-...+.-.+ ++-.+..+..-...++.|+..|+.+....+-+.|.
T Consensus 2003 ~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r~~~~i~~~~~~~~~~s~aq~~~k~~~~~~~e~iL~ 2082 (2806)
T KOG0892|consen 2003 LLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIARAFPVIMLSIKLLCKFSLAQENLKHDIDKLSEAILW 2082 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHHhhHHHHHHHHHHhhhhhhhhhccchhhhhHHHHHH
Confidence 32111 1111111 223334443333332222 22222222222233444555555544433333333
Q ss_pred HHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhcc
Q 000149 1406 QNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSR-VRELQP 1484 (2037)
Q Consensus 1406 ~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~-A~~l~~ 1484 (2037)
....++... +. .. .+.+.++. -....-..+...|+|+.++-...+..|++.|.+ +.....
T Consensus 2083 ~~~~kne~~--~~-----~s--~~~~~~~~----------lk~~~~~~~a~~g~Wlaetk~ens~~i~e~yl~~a~~~ae 2143 (2806)
T KOG0892|consen 2083 QRDEKNEAI--IS-----LS--ESLAKNNS----------LKEFPSDIYAVLGKWLAETKSENSALISEKYLEKAVSLAE 2143 (2806)
T ss_pred HHHhhhhHH--HH-----HH--hhhhhcch----------hhhhHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHHhh
Confidence 333222111 00 00 01111111 011234467788999999988888888888853 333222
Q ss_pred --ch----------HHHHHHHHhhhHHHHHHHHhh---hhh---------cc-cCCc----------------------c
Q 000149 1485 --MW----------EKGYFYMAKYCDDVLVDARKR---QEE---------NS-EIGP----------------------S 1517 (2037)
Q Consensus 1485 --~w----------eK~~~~la~y~d~l~~~~~~~---~~~---------~~-~~~~----------------------~ 1517 (2037)
+| .++|+++|+|-|..+.+.+.+ .+- +. ..+. +
T Consensus 2144 ~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~l~k~~~~~~~~~~er~~q~~~~~~~~~~rq~~lD 2223 (2806)
T KOG0892|consen 2144 HYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKDLQKLERSTVEASNEREEQMRKNHHVRVQRQLILD 2223 (2806)
T ss_pred hcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 368999999988887422110 000 00 0000 0
Q ss_pred hhh-------hhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCC
Q 000149 1518 EKR-------WWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDL 1590 (2037)
Q Consensus 1518 ~~~-------~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 1590 (2037)
+.. ...++..|+++|++++..|.+|....+.|++++||+++.. .+++..|.+.+..+
T Consensus 2224 e~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~~~D~~~i~R~cslWfsns~~----------------~evn~~mk~~i~~i 2287 (2806)
T KOG0892|consen 2224 EEELLALSEDRSKFLTLALTNYLNCLSESDEYDVDLIFRCCSLWFSNSHL----------------KEVNNSLKHEIQTV 2287 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccHHHHHHHhhhhccccch----------------HHHHHHHHHHhccC
Confidence 000 1357889999999999999999999999999999998752 45778888999999
Q ss_pred CchhhHhhHHHHHhhcc-CCChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcCCc-------------HHHHHHHHHHHH
Q 000149 1591 PAYQWLTVLPQLVSRIC-HQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTI-------------PSRREAAAEIIQ 1656 (2037)
Q Consensus 1591 P~~~wlt~lPQLiSRI~-h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS~~-------------~~R~~~a~~Il~ 1656 (2037)
|.|+|++|+.||.|||. ..+.++...+..++.+++.+||+|++|.++++.+... ..|+.+|+.++.
T Consensus 2288 psyKFip~~yQlAaRl~~~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e~~n~sr~sl~~~rki~a~l~~~ 2367 (2806)
T KOG0892|consen 2288 PSYKFIPLVYQLAARLGNSENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNEDENRSRGSIDRDRKIAAELDLC 2367 (2806)
T ss_pred CcchhHHHHHHHHHHhccccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChhhhhhcccccchhHHHHHHHhhh
Confidence 99999999999999999 5888999999999999999999999999999864322 223333333444
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHHHHHHHHhccCCccccc----cchhhhhHHHHhhccCCcccccccccccccCCCCCC
Q 000149 1657 AAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRT----INISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDAN 1732 (2037)
Q Consensus 1657 ~~k~~~~~~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~----~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~ 1732 (2037)
..... ..+.++++..+++.++.+|+.+.. +..+ +.+..++..++....- .+..|+....
T Consensus 2368 ~v~~~------~~~~v~~v~~lc~~yI~lAnl~~~-q~~t~~k~v~~p~~~~~~K~~nl~----------~v~~pT~ev~ 2430 (2806)
T KOG0892|consen 2368 DVNQG------AGNMVRQLECLCEAYISLANLKTS-QNDTTSKLVRLPGYQWFLKQLNLE----------GVPPPTMNVK 2430 (2806)
T ss_pred Hhhcc------chhHHHHHHHHHHHHHHHhcCccc-ccchhhhhhcCccccHHHhhhhcc----------CCCCCCCCcc
Confidence 43322 247899999999999999984322 2222 3334343333322111 1222332222
Q ss_pred CCCCCCCCCccCCCCcEEeeeccceEEecCCCceeEEEEEecCCCeeeEEec-CCCcchhhHHHHHHHHHHHHHHccCCc
Q 000149 1733 LTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK-PKDDLRKDSRMMEFTAMINRLLSKYPE 1811 (2037)
Q Consensus 1733 ~~~~~~~~pfp~~~~v~I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK-~~dDlRqD~r~~Ql~~liN~ll~k~~e 1811 (2037)
+...+. ..+.|+|.+|.++|.+.++.+-||.|++.||||++|..||| ++||||||+.|.|+|+++|.+|.++++
T Consensus 2431 v~~s~~-----~~~~p~i~s~~~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~e 2505 (2806)
T KOG0892|consen 2431 VNDSGD-----YGNIPTVVSFDDTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRE 2505 (2806)
T ss_pred ccCCcc-----cCCCceEEecccceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHH
Confidence 222222 36889999999999999999999999999999999999999 799999999999999999999999999
Q ss_pred ccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccc----cCchHHHHHHHHHhcCCChhH--HHHH
Q 000149 1812 SRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQ----KTNPQIKRIYDQFQGKIPEDE--MLKT 1885 (2037)
Q Consensus 1812 trrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~ 1885 (2037)
+++|+|.||||+||||++..|++|||.|++|+++++... ..|.+.+. ......++.+...+.+. .++ ....
T Consensus 2506 t~krkL~irTYKVvPls~~sGvlEwv~~tiplgeyLv~~--~~gah~ry~p~d~s~~~crk~m~~~q~k~-~E~r~k~y~ 2582 (2806)
T KOG0892|consen 2506 TRKRKLSIRTYKVIPLSPKAGVLEWVTNTIPLGEYLVVE--SGGAHKRYRPNDWSLSKCRKLMSEVQKKS-LETRLKAYD 2582 (2806)
T ss_pred HHhcccceeEEeeeecCcccceeecccCCeehhhhhccc--CCccccccCCCCCChHHHHHHHHHHhccc-HHHHHHHHH
Confidence 999999999999999999999999999999999998731 12332221 23445666665544332 222 3446
Q ss_pred hhcCCCchhHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC
Q 000149 1886 KILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE 1965 (2037)
Q Consensus 1886 ~i~~~~ppvl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~ 1965 (2037)
+||..|.||||.||++.||||..||++|.+||||.|+.|||||||||||||..|||||..||++||||||..|++|+.++
T Consensus 2583 ~vc~n~~PvfryFflEkF~dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilp 2662 (2806)
T KOG0892|consen 2583 KVCRNIRPVFRYFFLEKFPDPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILP 2662 (2806)
T ss_pred HHHhhchHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccChhHHh-hcccchhhHHHHHhhH----HHhhh---hhhHhhcccCCC
Q 000149 1966 KPELVPFRLTQVRKS-YGLCAMHFIVILSPLF----FPLKK---ILIYVCLVPQPS 2013 (2037)
Q Consensus 1966 ~pE~VPFRLT~nmvd-~G~~g~e~~~~~~~~f----~~~~k---~~~~~~~l~~~~ 2013 (2037)
+||.|||||||++|| ||++|+|| +|+-+. .-+|+ .+.+++|+---|
T Consensus 2663 tPE~VPFRLTRDiVdgmGItGveG--vFrRccE~t~~vlR~~~~~lltileVl~yD 2716 (2806)
T KOG0892|consen 2663 TPETVPFRLTRDIVDGMGITGVEG--VFRRCCEFTLEVLRREKESLLTILEVLLYD 2716 (2806)
T ss_pred CCCcccceeehhhccccCccCchH--HHHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 999999999999999 99999999 666444 44555 666677774444
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-70 Score=740.48 Aligned_cols=930 Identities=18% Similarity=0.247 Sum_probs=675.7
Q ss_pred HhhhhhhccHhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCCCCCcccCCCcchhhHHHHHHHHHHhhHHH
Q 000149 913 ACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQW 992 (2037)
Q Consensus 913 ~c~~ii~~D~~~a~fLLPylvl~vl~~~~~~~~~~i~~Ei~~VL~~~~~~~~~~~~~~~~~~~~~~~q~vF~vlD~l~~W 992 (2037)
+.+.+.-+|...++.+.=+++..+...-+++++.++..++...+..+ +.. . ...|--. -++.|
T Consensus 2341 ~l~~i~~~~~~~a~~~w~~~Fp~~w~~l~~de~~~~~~~~i~flS~~------~h~--~---q~~~~pn------vln~~ 2403 (3550)
T KOG0889|consen 2341 PLLQIQHHDDKVAEKLWVGLFPIVWSSLSKDEIRNLAGSIIPFLSSG------YHI--K---QQGCRPN------VLNAL 2403 (3550)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhhcCHhhhhcccchhccccccc------hhh--h---hhccchh------HHHHH
Confidence 44455667889999999999999999888888888888888887432 111 0 0111111 22333
Q ss_pred HHHHHHHhhhhhcchhcccCCCCCCCCCcchhhHHHHHhhhhhhhcCCCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcC
Q 000149 993 VDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSG 1072 (2037)
Q Consensus 993 ~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~fL~~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~ 1072 (2037)
+...-+ +.. .-.+|++++...+...|+|++++.++|.+......
T Consensus 2404 v~s~~~-----------------------------------~~~-~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~ 2447 (3550)
T KOG0889|consen 2404 VESLVK-----------------------------------IVP-PIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEM 2447 (3550)
T ss_pred HHHHHh-----------------------------------hcc-CCCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence 332110 010 13689999999999999999999999998765421
Q ss_pred CCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHHHhhcCHHHHHHHHHHHHccCCC------
Q 000149 1073 SFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPT------ 1146 (2037)
Q Consensus 1073 ~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~------ 1146 (2037)
. | .....+..++|.+||..|+|-|+.+|+|+.|.....+.+++.||+.|.|+.||..||++.-+.-.
T Consensus 2448 ~-~------~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~ 2520 (3550)
T KOG0889|consen 2448 E-N------TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFPETMVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYS 2520 (3550)
T ss_pred h-h------hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCC
Confidence 1 1 11234678999999999999999999999999999999999999999999999999999753221
Q ss_pred ch---hhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCc
Q 000149 1147 SV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNA 1223 (2037)
Q Consensus 1147 ~~---~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~ 1223 (2037)
.. -++..|++|..+|.|||.+.++++.... +..-+|||||+.+|..+++.+.+..+ +..+..
T Consensus 2521 ~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k~~~~---------~~llle~aWrlsdw~~~~~~l~~~~~------~~~~~~ 2585 (3550)
T KOG0889|consen 2521 ESEYKLWEDHWIRCASELQQWDVLTEFGKHEGN---------YELLLECAWRLSDWNDQKDALEQKAK------SLSDVP 2585 (3550)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------ceeeeehhccCCcchhHHHHHHHhhh------ccCCCC
Confidence 11 2446899999999999999998854221 24678999999999999998876543 233445
Q ss_pred chHHHHHHHHHHHHcCCcc---hHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhhHHHHHHHHHHhhcccc-cccc
Q 000149 1224 SFDMDVAKILQAMMKKDHF---SVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSF-LEKS 1299 (2037)
Q Consensus 1224 ~f~~~l~kaLlal~~~d~~---~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~-~~~~ 1299 (2037)
.|...++++++++.+.+.. ++...|.++-+.-+..|.+.+..+++.++++++.+|++.|++|+.++..+... ..++
T Consensus 2586 ~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n~~n 2665 (3550)
T KOG0889|consen 2586 GFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGNVQN 2665 (3550)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 7888999999998775543 66778888888888999999888999999999999999999999998865322 1233
Q ss_pred CCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCC-----C----------------CCchhHHHHHHHHHH
Q 000149 1300 FLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGAS-----G----------------LGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1300 ~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~-----~----------------l~~~~~~~WL~~Akl 1358 (2037)
....-.+++.++++|++|+|++++++..|..+..||+++|+.. . .-.+.++.-+++||+
T Consensus 2666 ~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakv 2745 (3550)
T KOG0889|consen 2666 LDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKV 2745 (3550)
T ss_pred cchhHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHH
Confidence 3345578999999999999999999999999999999998631 0 013556666899999
Q ss_pred HHHcCChHHHHHHHHHHhhcCCChHHHHHH--HHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000149 1359 CRLAGHYETATRAILEAQASGAPNVHMEKA--KLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~~p~~~iE~A--KLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 1436 (2037)
|||+|..++|.+-+.+.- +.|+..+..| |+--+-..+-+--.++..+++ +++++
T Consensus 2746 Arkh~l~~vcl~~L~~iy--tlp~veiqdaF~K~req~~c~l~~~~e~~~gLe-----vi~sT----------------- 2801 (3550)
T KOG0889|consen 2746 ARKHGLPDVCLNQLAKIY--TLPNVEIQDAFQKLREQAKCYLQNKNELKTGLE-----VIEST----------------- 2801 (3550)
T ss_pred HHhcCChHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHHHhcChHHHHHHHH-----HHhcc-----------------
Confidence 999999999999999884 4455444333 332111111111123444433 22221
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCc
Q 000149 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGP 1516 (2037)
Q Consensus 1437 ~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~ 1516 (2037)
++..-.++++|..+-+.|.+..+.|. .+++.+.|..|++++....|+|+.||+|+|+++...+. +
T Consensus 2802 ----Nl~yF~~~q~aeff~lkG~f~~kL~~--~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~----n----- 2866 (3550)
T KOG0889|consen 2802 ----NLMYFSDRQKAEFFTLKGMFLEKLGK--FEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPV----N----- 2866 (3550)
T ss_pred ----cHHHHhhHHHHHHHHhhhHHHHHhcC--cchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCc----c-----
Confidence 22233456789999999999999997 78999999999999999999999999999999843221 0
Q ss_pred chhhhhchHHHHHHHHHHHhccCC-cchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhh
Q 000149 1517 SEKRWWFYVPDVLLFYAKGLHRGH-KNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQW 1595 (2037)
Q Consensus 1517 ~~~~~~~~l~~ai~~Yl~sl~~g~-~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~w 1595 (2037)
..++.+|+.||++|+.+++ .+.+..+.|+|||.=- ++..+.+.++++++++.||+|.|
T Consensus 2867 -----i~~a~~avsCyLqA~~~~~~skaRk~iakvLwLls~----------------dda~~~l~~~~~k~l~~ip~~~w 2925 (3550)
T KOG0889|consen 2867 -----ISFACNAVSCYLQAARLYNSSKARKLIAKVLWLLSF----------------DDSLGTLGDVFDKFLGEIPVWNW 2925 (3550)
T ss_pred -----cHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh----------------ccccchHHHHHHHhhccCCchhh
Confidence 2467899999999999874 4689999999888722 22334678899999999999999
Q ss_pred HhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcCCc-HHHHH---------------HHHHHHHHHH
Q 000149 1596 LTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTI-PSRRE---------------AAAEIIQAAK 1659 (2037)
Q Consensus 1596 lt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS~~-~~R~~---------------~a~~Il~~~k 1659 (2037)
++|+|||+..+.|.+ .+.+..|+.++++.||||++|++.....-.. .+|.. |..+|....+
T Consensus 2926 l~~IPQLl~sLs~~e---~~~~~~iL~kia~~yPQal~f~lRta~~~~~i~qR~~~~~~~~~~~~~~p~~r~~~i~~~~r 3002 (3550)
T KOG0889|consen 2926 LYFIPQLLTSLSKKE---AKLVRLILIKIAKSYPQALYFPLRTAREDLVIEQRQQVEVMGDKSDTTDPMGRPSKISQKQR 3002 (3550)
T ss_pred hhhhHHHHhhccccc---hhHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcHHHHHHHhh
Confidence 999999999999998 7889999999999999999999987642211 11111 2223333333
Q ss_pred hcCCCC-------C----------chhhHHHHHHH---------------------------HHHHHHHHHhccCCc---
Q 000149 1660 KGSAHG-------N----------SANNLFGQFTS---------------------------LIDHLIKLCFHAGQS--- 1692 (2037)
Q Consensus 1660 ~~~~~~-------~----------~~~~li~~~~~---------------------------l~~~Li~l~~~~~~~--- 1692 (2037)
...+.. + ...++..++.. +...+.. +......
T Consensus 3003 ~~~p~~~s~~~~ld~~~~~w~~~~~l~~il~~~~~~la~~~~~~~~~i~~~~~~~~~e~~~r~v~al~~-~~~~~~~~r~ 3081 (3550)
T KOG0889|consen 3003 NLHPILSSLEKILDSVQLVWERLFDLEEILKTAYQLLAKTLETLFDKIQARFKSTPEEHALRLVNALLN-IDGIQNGNRL 3081 (3550)
T ss_pred ccCcchhhHHhhhccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccHHHHHHHHHHHH-Hhhhcccccc
Confidence 222200 0 00111111111 1111111 1100000
Q ss_pred -----ccccc---------------------chhhhhHHHHhhccCCcc-------------------------ccc---
Q 000149 1693 -----KSRTI---------------------NISTEFSALKRMMPLGII-------------------------MPI--- 1718 (2037)
Q Consensus 1693 -----~~~~~---------------------~ls~~f~~l~~~~~~~li-------------------------~pi--- 1718 (2037)
..... .+..||......+|+..- .++
T Consensus 3082 ~ivt~~~~~~~~~~~~l~~~~~~vl~~~~~~~~k~dFi~~~~~~~~~~~l~~~i~klk~w~~~le~k~~~~pk~~~LE~~ 3161 (3550)
T KOG0889|consen 3082 GIVTKNTKSLSDTEMNLNRFASNVLPDPVRKKFKEDFITNKDGMKCICDLENYIDKLRKWRSRLESKVDRFPKKLNLEEK 3161 (3550)
T ss_pred ccccccccCCcchHHHHHHHHHHhcchHHHHHHHHHHHhcccCCcccccHHHHHHHHHHHHHHHHHHHhcccccccHHhh
Confidence 00000 011122111110111100 011
Q ss_pred --------ccccccccCCCCCCCCCCCCCCCccCCCCcEEeeeccceEEec-CCCceeEEEEEecCCCeeeEEe--cCCC
Q 000149 1719 --------QQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILS-SLQRPKKIVLLGSDGIKRPFLC--KPKD 1787 (2037)
Q Consensus 1719 --------q~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f~~~v~V~~-S~~~Prki~i~GsdGk~y~fLv--K~~d 1787 (2037)
++.-.+++|+++.... .++ +..+.|.+|.|.|+++. ...+.||++++|+||+.|+|.+ ++-.
T Consensus 3162 s~~L~~F~hq~~evEiPGqyl~~k--~~~-----~~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~~~~~~~~ 3234 (3550)
T KOG0889|consen 3162 SRFLSNFSHQFDEVEIPGQYLLDK--SNN-----NYFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFAVQYPGLR 3234 (3550)
T ss_pred chHHhcccccCCcccCChHHhccc--chh-----hhhhhHHHhccchhhhcccceeEEEEEEeccCCeecceeeecccCC
Confidence 1133456666554332 111 46789999999999984 6899999999999999997665 5678
Q ss_pred cchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHH
Q 000149 1788 DLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIK 1867 (2037)
Q Consensus 1788 DlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~ 1867 (2037)
+-|.++|++|+++++|..+.+++|++||++.+.++.++|++++..|+|..++..||++|+++++++.|...+.+......
T Consensus 3235 ~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~~d 3314 (3550)
T KOG0889|consen 3235 NSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDDPILLYFD 3314 (3550)
T ss_pred CccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCcchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888554433222222
Q ss_pred HHHHHHhc--CCChhHH-----HHHhhcCCCch-hHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 000149 1868 RIYDQFQG--KIPEDEM-----LKTKILPMFPP-VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGEN 1939 (2037)
Q Consensus 1868 ~~~~~~~~--~~~~~~~-----~~~~i~~~~pp-vl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eN 1939 (2037)
++-..... ..+.... ++.....+.|. ++++||.++|++|..+|.+|++|+.++|+.++.+|++.+|.|.|+.
T Consensus 3315 ~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~~~~~~~lni~~~~p~k 3394 (3550)
T KOG0889|consen 3315 RLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFMEYMLNINGRGPAK 3394 (3550)
T ss_pred HHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHHHHHhcCCCCccc
Confidence 22111111 1222222 33333345674 8999999999999999999999999999999999999999999999
Q ss_pred eeEecCCCcEEEeeccccc-ccCCCCCCCCCCCcccChhHHh-hcccchhh
Q 000149 1940 ILFDSTTGDCVHVDFSCLF-DKGLLLEKPELVPFRLTQVRKS-YGLCAMHF 1988 (2037)
Q Consensus 1940 ILid~~tG~vvHIDF~~~f-~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~ 1988 (2037)
+++.++||.+..-||-+-. +..+.+...|.|||||||||++ .|..|+||
T Consensus 3395 ~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg 3445 (3550)
T KOG0889|consen 3395 LTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEG 3445 (3550)
T ss_pred eeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhh
Confidence 9999999999999996544 5566677899999999999999 68788887
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-70 Score=756.08 Aligned_cols=871 Identities=25% Similarity=0.400 Sum_probs=672.0
Q ss_pred cCCCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-hccCC
Q 000149 1038 LSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSLS 1116 (2037)
Q Consensus 1038 L~~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-r~~~~ 1116 (2037)
-..|+..+|...+..|++|+.|++|.|..+.... ..++++.|..+...++.+|.+.|+... ++...
T Consensus 1220 plpi~~~~L~~~~~~c~a~~~~l~y~el~~~~~~-------------~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~ 1286 (2341)
T KOG0891|consen 1220 PLPIPIKTLGLYAEKCRAYAKALHYKELEFLKEP-------------SPDTIESLISINNKLQQREAAIGVLKYAQQHSE 1286 (2341)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcc-------------chhHHHHHHhhcccchhHHHhccHHHHHHhHHH
Confidence 3467778999999999999999999999887541 236789999999999999999999763 44457
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhh-ccchhhhhhHhHHHHHHHHh
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLI-SRIPQYKKTWCMQGVQAAWR 1195 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~-~~~p~~~~~l~~~~~EAAWr 1195 (2037)
++.+..|+|+..+|++|+.+|+........+.+...|.++|+..+|+|+.+......-+ ....+.....++.++.++|-
T Consensus 1287 l~~~e~w~e~l~~~~d~l~a~~~~~~~~~~~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~~~~~~~~~~ap~a~~~~~~ 1366 (2341)
T KOG0891|consen 1287 LQLKETWYEKLHRWEDALAAYELREKAGDSSFELRMGKMRCLEALGDWDELSQLASEKWEVAGQEAKHKMAPLAAAAAWG 1366 (2341)
T ss_pred HHHhhhcccccccchhHhhhhhcccchhhhhHHHHhhhhhhhhhhhhHHHHhhhhcccCCCcchhHHHHHHHHHHHhhhc
Confidence 77888999999999999999997766555677778899999999999998874432211 12223455678899999999
Q ss_pred cCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHH
Q 000149 1196 LGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIV 1275 (2037)
Q Consensus 1196 lg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~ 1275 (2037)
+++|+.+.+|+...+. .+++..++++.+++.+.+.......++.+|..+...+++...|||+|+|-.++
T Consensus 1367 ~~~w~~~~~~~s~~~~-----------~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~dll~~e~~~~~~Es~sr~y~~~~ 1435 (2341)
T KOG0891|consen 1367 LGQWDTMAEYVSVMSE-----------DSQDKAFFRAILALHRDEFEKAVKLIERARDLLDTELTAMAGESYNRAYGVMV 1435 (2341)
T ss_pred cccchhhhhhcccccc-----------cchhhHHHHHHHhhhhhHHHHHHHhcccHHHHHHHHHHHHHhhHHhhchhhhh
Confidence 9999999998776553 35777888999999888888888889999999999998888899999999999
Q ss_pred HhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHH
Q 000149 1276 KLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQY 1355 (2037)
Q Consensus 1276 kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~ 1355 (2037)
..+++.|+|+++.+.... .....+.+.|..|+..++.....|+.++.+|..++++. +.+..|+++
T Consensus 1436 ~~~~~~e~E~~~~~k~~~-----------~r~~~i~~~~~~~l~~~q~~~~~wq~~lr~~~~v~~p~----~~~~~~ik~ 1500 (2341)
T KOG0891|consen 1436 RAQMLAELEEIIEYKKLP-----------ERRPIIAKTWWKRLQGCQKNVDDWQRILRVRSLVLSPQ----EDMEMWIKF 1500 (2341)
T ss_pred hhhhhhhHHHHHHhhccc-----------chhHHHHHHHHhhHHHhhccHHHHHHHHHHhhhccCCC----cchHHHHHH
Confidence 999999999999987531 34456788999999999999999999999999999987 446789999
Q ss_pred HHHHHHcCChHHHHHHHHHHhhc------------CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1356 AKLCRLAGHYETATRAILEAQAS------------GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1356 AklARKag~~~~A~~aLl~a~~~------------~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
|-+|||+|+...+...+.....- ..|.....+.|.+|..+....|++.++.....+..+. ...
T Consensus 1501 a~~cr~s~~~~l~~~~l~~~L~~~~~~~~~~~~~~~~P~~v~a~~~~~~~~~~~~~~~~~~~~~~s~l~~d~-----~~~ 1575 (2341)
T KOG0891|consen 1501 ASLCRKSGRLALARKLLNELLERDPSSDLPLPLKARLPQVVYAYLKYLWATDSKDEAINTLQEFTSTLNSDL-----GSD 1575 (2341)
T ss_pred HHHhHHhHHHHHHHHHHHHHHhcCccccccccccccChHHHHHHHhHHHhhccchHHHHHhHHHHHHHHhhc-----CCC
Confidence 99999999999998887654321 2466788899999999999999999988765432110 000
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhccchHHHHHHHHh--hh
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQ----KQKEDVITLYSRVRELQPMWEKGYFYMAK--YC 1497 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~----~~~~~i~~~Y~~A~~l~~~weK~~~~la~--y~ 1497 (2037)
......-+ ............|++++..|.|-...-. .....+...|..|+..++.|+|+|+.||. |+
T Consensus 1576 ~~~~~~~~-------~~~~~~~~~~l~a~~~l~~~~w~~~~~~s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~ 1648 (2341)
T KOG0891|consen 1576 PDELLSEP-------TEAEKQEYTKLLARCFLKLGEWQQLLQDSWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFE 1648 (2341)
T ss_pred chhhhhcc-------cchhhhHHHHHHHHHHHhhccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 00000000 0111123456789999999999865432 22467788999999999999999999873 44
Q ss_pred HHHHHHHHhhh--hh--c---c--cCC--cchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCC
Q 000149 1498 DDVLVDARKRQ--EE--N---S--EIG--PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGS 1566 (2037)
Q Consensus 1498 d~l~~~~~~~~--~~--~---~--~~~--~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~ 1566 (2037)
...+.....+. .. + . ..+ -+......|+..++.+|++++....+...|...|+++|||++|...
T Consensus 1649 ~V~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~avk~ff~~~~~~~~s~lqdtlrl~~L~f~~g~~~----- 1723 (2341)
T KOG0891|consen 1649 VVQMLKQVTKAKYAPGANIWNMPDYLGSNSDLMLIHHYAVPAVKGFFRSISLSPGSSLQDTLRLLTLWFDFGDNK----- 1723 (2341)
T ss_pred HHHhhhhhhccccCCccccccchhhccCcCCccchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCCc-----
Confidence 33321111110 00 0 0 000 0111234588999999999999888777899999999999999732
Q ss_pred CChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcCCcHH
Q 000149 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPS 1646 (2037)
Q Consensus 1567 ~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS~~~~ 1646 (2037)
.++..+...+..+|.+.|+.++|||++||.-+...+.+.+.+++..+++.+||+..|++.++.+|....
T Consensus 1724 -----------~v~q~i~~~~~~~~i~~wl~~ipqLiari~~~~~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~ 1792 (2341)
T KOG0891|consen 1724 -----------DVYQALLEGINLIPIDTWLEVIPQLIARIHTPDQLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVA 1792 (2341)
T ss_pred -----------hHHHHHHhhhhHhhHHHHHHhHHHHHHHHhccchHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHH
Confidence 155666777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHH------hccCCcccccc-----------------------
Q 000149 1647 RREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLC------FHAGQSKSRTI----------------------- 1697 (2037)
Q Consensus 1647 R~~~a~~Il~~~k~~~~~~~~~~~li~~~~~l~~~Li~l~------~~~~~~~~~~~----------------------- 1697 (2037)
|++.+..|+++++.+++ .++++....++++++++ |+++.+.+...
T Consensus 1793 r~~~a~~ile~m~~~~~------~Lv~~a~lvs~elir~a~lwhe~w~e~ldeAsr~yf~~~nv~~m~~~l~p~~~~l~~ 1866 (2341)
T KOG0891|consen 1793 RQKAALSILEKMREHSP------TLVRQARLVSEELIRVAILWHEQWHEGLEEASRLYFSDHNVEGMFAVLRPLHEMLER 1866 (2341)
T ss_pred HHHhHHHHHHHHHHhhH------hhhhhhhhhHHHHHHHHhhhHhhhhhccHHHHHHHhhHhhHHHHHHHHhHHHHHhhc
Confidence 99999999999998765 46777777778887765 34433322211
Q ss_pred --------chhhhhH--------HHHhhccCCccccccc--------------------cc-----c-cccCCCCCCCCC
Q 000149 1698 --------NISTEFS--------ALKRMMPLGIIMPIQQ--------------------SL-----T-VTLPPQDANLTE 1735 (2037)
Q Consensus 1698 --------~ls~~f~--------~l~~~~~~~li~piq~--------------------~l-----~-~~LP~~~~~~~~ 1735 (2037)
++...|+ ..+++...+.+.-+.+ .+ + --++..+..+..
T Consensus 1867 ~~~t~~e~sFqqt~g~dl~ea~~~~~~~~~~~~~~dL~qawdly~~vf~ki~~ql~~l~sl~l~~vSp~L~~~~dlel~v 1946 (2341)
T KOG0891|consen 1867 GPQTLKEHSFQQTYGRDLKEAYEWVQKFEQSGDVKDLNQAWDIYYNVFKKIRKQLPQLTSLDLQYVSPKLLSAKDLELAV 1946 (2341)
T ss_pred CCcchhhhhhHHhhChhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccccccceecc
Confidence 1111110 0011100000000000 00 0 012223344445
Q ss_pred CCCCCCccCCCCcEEeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCc
Q 000149 1736 SPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRR 1815 (2037)
Q Consensus 1736 ~~~~~pfp~~~~v~I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR 1815 (2037)
+++|.|- ...+.|.+|.+++.|+.|++|||++.|+||||+.|.|++|+++|+|||+|+||+|+++|.++..+.++.||
T Consensus 1947 Pgty~~~--~~~i~i~~f~~~~~vitskqRprkl~i~gs~g~d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr 2024 (2341)
T KOG0891|consen 1947 PGTYDPG--KPIIRIQSFEPKFNVITSKQRPRKLVIRGSDGKDYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRR 2024 (2341)
T ss_pred CCccCCC--ceEEehhhccHHHHHHHHHhhhHHHhhcccchhhHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHH
Confidence 6666553 57889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhc------CCChhHHHHHhhcC
Q 000149 1816 KLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQG------KIPEDEMLKTKILP 1889 (2037)
Q Consensus 1816 ~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~ 1889 (2037)
+|.|.+|.|+|++++.|+++||+|+.|++.++..+.... +.+ .+...+ ...+... -+.+.+.|...+-.
T Consensus 2025 ~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k-~i~---l~~eh~-~~~~~~l~~~~ltl~qk~~vfe~~~~~ 2099 (2341)
T KOG0891|consen 2025 NLTIQRYSVIPLSPDSGLIGWVPNCDTLHTLIREYREKK-KIP---LNIEHR-VMLQMAPDYDHLTLMQKVEVFEYALSN 2099 (2341)
T ss_pred HHHHHHhhhcCCCCCCceeeeecccccHHHHHHHHHHhh-ccC---CcchHH-HHHhcCccccchhhhhHHhHhHHHhhc
Confidence 999999999999999999999999999999999876654 221 122211 1111110 12233445444444
Q ss_pred CCchhHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC-CCC
Q 000149 1890 MFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE-KPE 1968 (2037)
Q Consensus 1890 ~~ppvl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~-~pE 1968 (2037)
.-...+++-++-..+.++.|+..|.+||+|.|+|||+|||+|+|||||+|.|+|+.||+++|||||.||+..+.++ .||
T Consensus 2100 t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe 2179 (2341)
T KOG0891|consen 2100 TQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPE 2179 (2341)
T ss_pred CcHHHHHHHHHHhCCChhHHHHHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccc
Confidence 4445777878888899999999999999999999999999999999999999999999999999999999999987 699
Q ss_pred CCCcccChhHHh-hcccchhh
Q 000149 1969 LVPFRLTQVRKS-YGLCAMHF 1988 (2037)
Q Consensus 1969 ~VPFRLT~nmvd-~G~~g~e~ 1988 (2037)
.+||||||+.+. +-+.|++|
T Consensus 2180 ~~pfRlTrmli~amev~gl~g 2200 (2341)
T KOG0891|consen 2180 KVPFRLTRMLINAMEVTGIEG 2200 (2341)
T ss_pred cccHHHHHHHHHhHHHHhhhh
Confidence 999999999998 54444443
|
|
| >COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-58 Score=649.97 Aligned_cols=397 Identities=28% Similarity=0.441 Sum_probs=300.0
Q ss_pred CCchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCCCCCc-h
Q 000149 1590 LPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNS-A 1668 (2037)
Q Consensus 1590 lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~~~~~-~ 1668 (2037)
++...|+++++|+.+|+.+++.+ |+..+...+|.+..|...+...+....+....+..++........... .
T Consensus 1634 l~~~~~~~~l~q~~~r~~~~~~~-------i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~D 1706 (2105)
T COG5032 1634 LLHLLFEPILAQLLSRLSSENNK-------ISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKSPRKIRKKFKID 1706 (2105)
T ss_pred hhhhhHHHHHHHHHHHhcccchH-------HHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 56666999999999999999965 777788888999998887766665556666666666655110000000 0
Q ss_pred hhHHHHHHHHH-HHHHHHHhccCCccccccchhhhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCC
Q 000149 1669 NNLFGQFTSLI-DHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDL 1747 (2037)
Q Consensus 1669 ~~li~~~~~l~-~~Li~l~~~~~~~~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~ 1747 (2037)
.....+...+. +.+-+.+ ...+. .....+. +..|.....|- +....+|+.+... .+.
T Consensus 1707 ~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~---~~~~~~~~~~~--~~e~~~P~~~~~~-----------k~~ 1764 (2105)
T COG5032 1707 ISLLNLSRKLYISVLRSIR--KRLKR----LLELRLK---KVSPKLLLFHA--FLEIKLPGQYLLD-----------KPF 1764 (2105)
T ss_pred hhhhhhhHHHHHHHHHHHH--HHhHH----HHHHHhc---ccCHHHHhccc--cccccCCcccccC-----------CCC
Confidence 00011111111 1111110 00000 0000111 11111111121 4566677654321 367
Q ss_pred cEEeeeccceEEecC-CCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeE
Q 000149 1748 PTISGIADEAEILSS-LQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIP 1826 (2037)
Q Consensus 1748 v~I~~f~~~v~V~~S-~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViP 1826 (2037)
|+|.+|.|++.+++| .++||+++++|+||+.|+|++|++||+|||+|+||++++||++|+++++|+||+++|++|+|+|
T Consensus 1765 v~I~~f~p~~~~~~~~~~~p~rl~~rgsdG~~y~~i~K~~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vip 1844 (2105)
T COG5032 1765 VLIERFEPEVSVVKSHLQRPRRLTIRGSDGKLYSFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIP 1844 (2105)
T ss_pred ceEEEecCceeeeecccccceEEEEEecCCcEEEEEeecCccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEe
Confidence 899999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhc-CCChhHHHHHhhcCCCchhHHHHHHHhCCC
Q 000149 1827 LTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQG-KIPEDEMLKTKILPMFPPVFHKWFLTTFSE 1905 (2037)
Q Consensus 1827 Ls~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~ 1905 (2037)
++|+||+||||+|++|+|+|+.+++++.+...... +++...... +....+.+.......+||+|++||.+.||+
T Consensus 1845 ls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~ 1919 (2105)
T COG5032 1845 LSPGSGIIEWVPNSDTLHSILREYHKRKNISIDQE-----KKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPN 1919 (2105)
T ss_pred ccCCcceEEEecCcchHHHHHHHHhhhcCCChhHH-----hhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCC
Confidence 99999999999999999999999998776543211 122111111 111223444566678889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeeccccc-ccCCCCCCCCCCCcccChhHHh-hcc
Q 000149 1906 PAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF-DKGLLLEKPELVPFRLTQVRKS-YGL 1983 (2037)
Q Consensus 1906 p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f-~~g~~l~~pE~VPFRLT~nmvd-~G~ 1983 (2037)
|.+|+.+|+||++|+|+|||+|||||+|||||+|||+|+.||+++|||||+|| +++..++.||.||||||+||++ +|.
T Consensus 1920 ~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~ 1999 (2105)
T COG5032 1920 PEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGV 1999 (2105)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCc
Confidence 99999999999999999999999999999999999999889999999996554 5556678899999999999999 899
Q ss_pred cchhh--HHHHHhhHHHhhh---hhhHhhcccCCCC-----ccchhh
Q 000149 1984 CAMHF--IVILSPLFFPLKK---ILIYVCLVPQPSS-----FYSCEY 2020 (2037)
Q Consensus 1984 ~g~e~--~~~~~~~f~~~~k---~~~~~~~l~~~~s-----~~~~~~ 2020 (2037)
.|.|| ...+...|.++|| .|..++|+|..|. ..||+.
T Consensus 2000 ~g~EG~Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~~~ 2046 (2105)
T COG5032 2000 SGVEGSFRELCETAFRALRKNADSLMNVLELFVRDPLIEWRRLPCFR 2046 (2105)
T ss_pred cchhhHHHHHHHHHHHHHhccHHHHHHHHHHHhcCcchhhhcCcccc
Confidence 99995 6667788899999 8888999999998 999998
|
|
| >cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-56 Score=526.52 Aligned_cols=262 Identities=33% Similarity=0.512 Sum_probs=220.1
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|.|+|.|++|+++||+|+++|+||+.|.||+|++||+|+|+|+|||+++||++|++++||++|+|++++|+|+||++
T Consensus 1 ~~~f~~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~ 80 (279)
T cd05171 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSP 80 (279)
T ss_pred CCCccCeEEEecCCCCCEEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccC-chHHHHHHHHHhcCC--ChhHHHHHhhcCCCchhHHHHHHHhCCCh
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKT-NPQIKRIYDQFQGKI--PEDEMLKTKILPMFPPVFHKWFLTTFSEP 1906 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~ppvl~~~f~~~f~~p 1906 (2037)
++||||||+|+.||++|+++++...+....... .....+.+....... ...+. .+++++.++|+|++||...|++|
T Consensus 81 ~~GLIe~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-f~~i~~~~~p~l~~~f~~~~~~~ 159 (279)
T cd05171 81 RAGILEWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRKAMAEVQKESNEERLKV-FLKICKNFRPVFRYFFLEKFLDP 159 (279)
T ss_pred CceEEEECCCChhHHHHHHHhhhcccccCccchhHHHHHHHHHHhhcCCHHHHHHH-HHHHHHhCcHHHHHHHHHHCcCH
Confidence 999999999999999999987643333221100 001111221111111 11223 35677888999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccc
Q 000149 1907 AAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCA 1985 (2037)
Q Consensus 1907 ~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g 1985 (2037)
.+||.+|++|++|+|+|||+|||||||||||+|||||+.||+++|||||++|++|+.++.||.||||||+||++ +|+.|
T Consensus 160 ~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg~~g 239 (279)
T cd05171 160 QDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMGITG 239 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred hhh--HHHHHhhHHHhhh---hhhHhhcccCC
Q 000149 1986 MHF--IVILSPLFFPLKK---ILIYVCLVPQP 2012 (2037)
Q Consensus 1986 ~e~--~~~~~~~f~~~~k---~~~~~~~l~~~ 2012 (2037)
++| ...+...+.++|+ .|..+++++-.
T Consensus 240 ~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~ 271 (279)
T cd05171 240 VEGVFRRCCEKTLEVLRDNKDAILTILEVLLY 271 (279)
T ss_pred CcchHHHHHHHHHHHHHcChHHHHHHHHHHHh
Confidence 987 3444456666666 55555555433
|
ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi |
| >cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-55 Score=521.04 Aligned_cols=256 Identities=30% Similarity=0.495 Sum_probs=217.8
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|+|+|.|++|+++||+|+++|+||+.|+||+|++||+|||+|+||+++++|.+|++++||++|+|.++||+|||+++
T Consensus 1 I~~f~~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls~ 80 (280)
T cd05169 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLSP 80 (280)
T ss_pred CccccCeEEEEeCCCCCeEEEEECCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHH---HhcCC---ChhHHHHHhhcCCCc-hhHHHHHHHh
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQ---FQGKI---PEDEMLKTKILPMFP-PVFHKWFLTT 1902 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~i~~~~p-pvl~~~f~~~ 1902 (2037)
++||||||+|+.|+.+|++++++..+.... .....+... ..... .+.+.++ ++++..| ++|++||+..
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~k~~~~~-~i~~~~~~~~l~~~~~~~ 155 (280)
T cd05169 81 NVGLIGWVPGCDTLHSLIREYRKKRNIPLN----LEHRLMELKSAPDYDNLTLIQKLEVFE-YALNNTPGDDLRKILWLK 155 (280)
T ss_pred CcceEEeCCCCchHHHHHHHHHHHcCCChh----HHHHHHHHHhhhhhhhCCHHHHHHHHH-HHHHhCCHHHHHHHHHHh
Confidence 999999999999999999998876554321 111111000 00111 1233444 3454455 5999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCC-CCCCCCCcccChhHHh-
Q 000149 1903 FSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EKPELVPFRLTQVRKS- 1980 (2037)
Q Consensus 1903 f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l-~~pE~VPFRLT~nmvd- 1980 (2037)
|++|..|+.+|++|++|+|+|||+|||||||||||+|||||+.||+++|||||++|++|+++ +.||.|||||||||++
T Consensus 156 ~~~~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~ 235 (280)
T cd05169 156 SPSSEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNA 235 (280)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999875 6899999999999999
Q ss_pred hcccchhh--HHHHHhhHHHhhh---hhhHhhccc
Q 000149 1981 YGLCAMHF--IVILSPLFFPLKK---ILIYVCLVP 2010 (2037)
Q Consensus 1981 ~G~~g~e~--~~~~~~~f~~~~k---~~~~~~~l~ 2010 (2037)
+|++|++| ...+...+.++|+ .+..+++++
T Consensus 236 lG~~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f 270 (280)
T cd05169 236 LGVSGIEGTFRTTCEDVMNVLRENKESLMAVLEAF 270 (280)
T ss_pred hCCCCCCCchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 89999987 4555567777776 555555543
|
TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with |
| >cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=520.19 Aligned_cols=260 Identities=27% Similarity=0.510 Sum_probs=215.2
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|+++|.|++|+++||+|+++|+||+.|+||+|++||||+|+|+|||+++||.+|++++++++|+|.|+||.||||++
T Consensus 1 I~~f~~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs~ 80 (307)
T cd05170 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLGP 80 (307)
T ss_pred CccccCeEEEEecCCCceEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCcc-----------------ccCchHHHHHHHHHhc-CC------C--h---h
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDR-----------------QKTNPQIKRIYDQFQG-KI------P--E---D 1880 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~-----------------~~~~~~~~~~~~~~~~-~~------~--~---~ 1880 (2037)
++||||||+|+.||++|++.++++.+.... .+......++...... .. . . .
T Consensus 81 ~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 160 (307)
T cd05170 81 RSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSVL 160 (307)
T ss_pred CcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHHH
Confidence 999999999999999999987765432100 0000011122111110 00 0 0 1
Q ss_pred HHHHHhhcCCCch-hHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccc
Q 000149 1881 EMLKTKILPMFPP-VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD 1959 (2037)
Q Consensus 1881 ~~~~~~i~~~~pp-vl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~ 1959 (2037)
....+++++..|+ .+.++++.++++|++||.+|++||+|+|+|||+|||||||||||+|||||+.||+++|||||++|+
T Consensus 161 ~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f~ 240 (307)
T cd05170 161 RQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCFE 240 (307)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhhc
Confidence 1223456667776 688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccChhHHh-hcccchhh--HHHHHhhHHHhhh---hhhHhhcc
Q 000149 1960 KGLLLEKPELVPFRLTQVRKS-YGLCAMHF--IVILSPLFFPLKK---ILIYVCLV 2009 (2037)
Q Consensus 1960 ~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~--~~~~~~~f~~~~k---~~~~~~~l 2009 (2037)
+|+.+++||.|||||||||++ +|++|++| ...+...+..+|+ .|..++++
T Consensus 241 ~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~ 296 (307)
T cd05170 241 KGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEA 296 (307)
T ss_pred ccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999999999999999999 89999998 3344455566666 44444443
|
SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno |
| >cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=492.14 Aligned_cols=217 Identities=33% Similarity=0.550 Sum_probs=200.0
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|.++|.|++|+++||+++++|+||+.|+||+|++||+|||+|+|||++++|.+|++++++++|++.+++|+|+|+++
T Consensus 1 i~~~~~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls~ 80 (235)
T cd05172 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMTP 80 (235)
T ss_pred CCCcCCceEEeccCCCCEEEEEECCCCCEEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHH
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w 1909 (2037)
++||||||+|+.|+++|+++ +++++||.+.+++|++|
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~-------------------------------------------~~l~~~~~~~~~~~~~~ 117 (235)
T cd05172 81 RFGLIEWLENTTPLKEILKN-------------------------------------------DLLRRALVEMSASPEAF 117 (235)
T ss_pred CCceEEEcCCchhHHHHHhh-------------------------------------------HHHHHHHHHHCCCHHHH
Confidence 99999999999999999754 35778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC-CCCCCCCCcccChhHHh-hcccchh
Q 000149 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LEKPELVPFRLTQVRKS-YGLCAMH 1987 (2037)
Q Consensus 1910 ~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~-l~~pE~VPFRLT~nmvd-~G~~g~e 1987 (2037)
+.+|++|++|+|+||++|||||||||||+|||||+.||+++|||||++|+++++ ++.||.|||||||||++ +|+.|.+
T Consensus 118 ~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~ 197 (235)
T cd05172 118 LSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKAD 197 (235)
T ss_pred HHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999987 78899999999999999 8999999
Q ss_pred h--HHHHHhhHHHhhh---hhhHhhcc
Q 000149 1988 F--IVILSPLFFPLKK---ILIYVCLV 2009 (2037)
Q Consensus 1988 ~--~~~~~~~f~~~~k---~~~~~~~l 2009 (2037)
| ...+...+..+|+ .+..++++
T Consensus 198 G~f~~~~~~~~~~Lr~~~~~l~~~l~~ 224 (235)
T cd05172 198 GLLRSCMVHTLRALRNERHLLLSTMDV 224 (235)
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 8 3334455566666 44444444
|
DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st |
| >cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=495.81 Aligned_cols=217 Identities=26% Similarity=0.413 Sum_probs=195.7
Q ss_pred EeeeccceEEe-cCCCceeEEEEEecCCCeeeEEec--CCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeE
Q 000149 1750 ISGIADEAEIL-SSLQRPKKIVLLGSDGIKRPFLCK--PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIP 1826 (2037)
Q Consensus 1750 I~~f~~~v~V~-~S~~~Prki~i~GsdGk~y~fLvK--~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViP 1826 (2037)
|++|.|+|+|+ +|.++||||+++|+||+.|+|||| +++|+|+|+|+|||+++||.+|.+++||++|+|.+++|.|||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 57899999986 688999999999999999999999 478999999999999999999999999999999999999999
Q ss_pred eCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcC-CCch-hHHHHHHHhCC
Q 000149 1827 LTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILP-MFPP-VFHKWFLTTFS 1904 (2037)
Q Consensus 1827 Ls~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~pp-vl~~~f~~~f~ 1904 (2037)
|++++|||||++|+.|++++++. ..+.+ ++++. ..|+ +|++||+++|+
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~~-----------------------------~~~~~-~~i~~~~~p~~~l~~~~~~~~~ 130 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYED-----------------------------KLEIY-NEIQKDMVPDTILKNYILSTFP 130 (253)
T ss_pred cCCccceEEECCCCccHHHHHHH-----------------------------HHHHH-HHHHHhcCCHHHHHHHHHHHCC
Confidence 99999999999999999999754 01122 22332 3554 99999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCC-CCCCCCCcccChhHHh-hc
Q 000149 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EKPELVPFRLTQVRKS-YG 1982 (2037)
Q Consensus 1905 ~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l-~~pE~VPFRLT~nmvd-~G 1982 (2037)
+|++||.+|++||+|+|+|||+|||+|||||||+|||||..||+++|||||++|++|..+ +.||.|||||||||++ +|
T Consensus 131 ~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g 210 (253)
T cd05163 131 TYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIG 210 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999876 7999999999999999 89
Q ss_pred ccchhhHHHHHhhHHH
Q 000149 1983 LCAMHFIVILSPLFFP 1998 (2037)
Q Consensus 1983 ~~g~e~~~~~~~~f~~ 1998 (2037)
++|++| .|+.++.+
T Consensus 211 ~~g~eG--~f~~~~~~ 224 (253)
T cd05163 211 PIGLEG--ILTSSMMA 224 (253)
T ss_pred CcCcCC--cHHHHHHH
Confidence 999999 45444433
|
TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat |
| >cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-52 Score=485.37 Aligned_cols=220 Identities=64% Similarity=1.068 Sum_probs=204.8
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|++++.|++|+++||+++++|+||+.|.||+|++||||||+|+||+++++|.+|.++++|+++++++++|+|+|+++
T Consensus 1 i~~~~~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~ 80 (237)
T cd00892 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLNE 80 (237)
T ss_pred CccccCeEEEEeccCCceEEEEEcCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHH
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w 1909 (2037)
++||||||+|+.|+++|+++++ ||+|++||.++|++|.+|
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~----------------------------------------~~~l~~~~~~~~~~~~~~ 120 (237)
T cd00892 81 ECGIIEWVPNTATLRSILLEIY----------------------------------------PPVFHEWFLENFPDPSAW 120 (237)
T ss_pred CCceEEECCCCccHHHHHHHhC----------------------------------------CHHHHHHHHHHCcCHHHH
Confidence 9999999999999999987632 468999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhh
Q 000149 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHF 1988 (2037)
Q Consensus 1910 ~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~ 1988 (2037)
+.+|++|+.|+|+||++|||||+|||||+||||++.||+++|||||++|++|+.+++||.|||||||||++ +|+.|.+|
T Consensus 121 ~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~g 200 (237)
T cd00892 121 LKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVEG 200 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999887
Q ss_pred --HHHHHhhHHHhhh---hhhHhhcc
Q 000149 1989 --IVILSPLFFPLKK---ILIYVCLV 2009 (2037)
Q Consensus 1989 --~~~~~~~f~~~~k---~~~~~~~l 2009 (2037)
...+...+..+|+ .+..++++
T Consensus 201 ~F~~~~~~~~~~Lr~~~~~l~~~l~~ 226 (237)
T cd00892 201 LFRKSCEVTLRLLRSNKETLMSVLET 226 (237)
T ss_pred chHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4555566777777 45555444
|
ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central |
| >cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-51 Score=468.22 Aligned_cols=204 Identities=50% Similarity=0.824 Sum_probs=192.9
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
|.+|+++|.|++|+++||+|+++|+||+.|.||+|++||+|||+|+||+++++|.+|+++.||++|++++++|.|+|+++
T Consensus 1 i~~~~~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls~ 80 (222)
T cd05164 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLNS 80 (222)
T ss_pred CccccCeeEEecccCCCEEEEEECCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHH
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w 1909 (2037)
++||||||+|+.|++ ++|++||..+|++|++|
T Consensus 81 ~~GliE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~~ 112 (222)
T cd05164 81 RSGLIEWVEGTTTLK------------------------------------------------PVLKKWFWLQFPDPEQW 112 (222)
T ss_pred CCceEEEcCCcchHH------------------------------------------------HHHHHHHHHHCcCHHHH
Confidence 999999999999987 25667899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhh
Q 000149 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHF 1988 (2037)
Q Consensus 1910 ~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~ 1988 (2037)
|.+|++|+.|+|++|++|||+|+|||||+||||++.||+++|||||++|++++.++.||.|||||||||++ +|+.|.+|
T Consensus 113 ~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~G 192 (222)
T cd05164 113 FAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVEG 192 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999887
Q ss_pred --HHHHHhhHHHhhh
Q 000149 1989 --IVILSPLFFPLKK 2001 (2037)
Q Consensus 1989 --~~~~~~~f~~~~k 2001 (2037)
...+...+.++|+
T Consensus 193 ~f~~~~~~~~~~Lr~ 207 (222)
T cd05164 193 LFRKICEQTLEVFRK 207 (222)
T ss_pred hHHHHHHHHHHHHHh
Confidence 4555566677776
|
Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d |
| >cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-48 Score=443.05 Aligned_cols=210 Identities=32% Similarity=0.545 Sum_probs=194.5
Q ss_pred EeeeccceEEecCCCceeEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCC
Q 000149 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2037)
Q Consensus 1750 I~~f~~~v~V~~S~~~Prki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~ 1829 (2037)
+.+|.+.++|++|+++||+++++|+||+.|+|++|++||+|||+|+||+++++|.+|++++ ++++++++|.|+|+++
T Consensus 1 ~~~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vipls~ 77 (219)
T cd00142 1 IAIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIPLSP 77 (219)
T ss_pred CCccCCceEEEcccCCCEEEEEEccCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEEecC
Confidence 3578899999999999999999999999999999999999999999999999999999886 6899999999999999
Q ss_pred CceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHH
Q 000149 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2037)
Q Consensus 1830 ~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w 1909 (2037)
++||||||+|+.|++ ++|++||...+++|++|
T Consensus 78 ~~GlIE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~~ 109 (219)
T cd00142 78 RSGLIEVVPGSVTLE------------------------------------------------DDLSKWLKRKSPDEDEW 109 (219)
T ss_pred CceEEEEeCCCchhH------------------------------------------------HHHHHHHHHHCcCHHHH
Confidence 999999999999987 36778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhh
Q 000149 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHF 1988 (2037)
Q Consensus 1910 ~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~ 1988 (2037)
+.+|++|+.|+|+||++|||+|+|||||+||||++.||+++|||||++|++++++..||.||||||+||++ +|..|.+|
T Consensus 110 ~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~g 189 (219)
T cd00142 110 QEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVFG 189 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchhh
Confidence 99999999999999999999999999999999998899999999999999999998899999999999999 89888876
Q ss_pred --HHHHHhhHHHhhh---hhhHhhccc
Q 000149 1989 --IVILSPLFFPLKK---ILIYVCLVP 2010 (2037)
Q Consensus 1989 --~~~~~~~f~~~~k---~~~~~~~l~ 2010 (2037)
...+...+..+|+ .+..+.++|
T Consensus 190 ~F~~~~~~~~~~lr~~~~~i~~ll~~~ 216 (219)
T cd00142 190 PFRSLCVKAMLILRRHAGLLLNLLSLM 216 (219)
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHHh
Confidence 5667788888888 444455544
|
Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the |
| >cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=464.29 Aligned_cols=238 Identities=22% Similarity=0.335 Sum_probs=210.0
Q ss_pred CCCcEEeeec-cceEEecCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceecc
Q 000149 1745 SDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2037)
Q Consensus 1745 ~~~v~I~~f~-~~v~V~~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~t 1821 (2037)
.+.++|.+|. +++.|++|+++|+++++.|+| |+.|.||+|++||||||+++||++++||.+|+++. .+|++++
T Consensus 54 ~p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~----ldl~l~~ 129 (352)
T cd00891 54 DPRLEIKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKEG----LDLRMTP 129 (352)
T ss_pred CCceEEEEEeccceEEeccccCCcEEEEEecCCCCCEEEEEeccCCchhHHHHHHHHHHHHHHHHHHCC----CCeeeEE
Confidence 4668999996 679999999999999999999 99999999999999999999999999999999874 6899999
Q ss_pred ceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHH
Q 000149 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2037)
Q Consensus 1822 y~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~ 1901 (2037)
|+|+|+++++||||||+|+.|+++|.+++....|. ++ .+.+++||.+
T Consensus 130 Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~~--------------------------~~-------~~~l~~~~~~ 176 (352)
T cd00891 130 YGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGGA--------------------------FK-------DNPLMNWLKK 176 (352)
T ss_pred EEEEEccCCceEEEEeCCCccHHHHHHhcCccccc--------------------------cc-------cchHHHHHHH
Confidence 99999999999999999999999998763211110 11 1357899999
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC-CC-CCCCCCcccChhHH
Q 000149 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LE-KPELVPFRLTQVRK 1979 (2037)
Q Consensus 1902 ~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~-l~-~pE~VPFRLT~nmv 1979 (2037)
.+++|..|..+|.+|++|+|+|||+||||||||||++||||| .+|+++|||||++|++++. +. .||.||||||++|+
T Consensus 177 ~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~-~~G~~~HIDFG~ilg~~~~~~~~~~E~~PFrLT~~mv 255 (352)
T cd00891 177 KNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLT-KTGHLFHIDFGHFLGNFKKKFGIKRERAPFVLTPDMA 255 (352)
T ss_pred hCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEEC-CCCCEEEEehHHhhccCCccCCCCCCCCCeeecHHHH
Confidence 999999999999999999999999999999999999999999 6999999999999997754 33 59999999999999
Q ss_pred h-hcccchh----hHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1980 S-YGLCAMH----FIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1980 d-~G~~g~e----~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+ +|..|.+ |...+..+|.++|+ .+..++++|. ++-+||++.
T Consensus 256 ~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~-~~~lp~~~~ 304 (352)
T cd00891 256 YVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLML-SAGIPELQS 304 (352)
T ss_pred HHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhc-cCCCCccCc
Confidence 9 7877643 67777789999999 7788888887 467999984
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c |
| >cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=456.88 Aligned_cols=237 Identities=22% Similarity=0.350 Sum_probs=207.0
Q ss_pred CCCcEEeeec-cceEEecCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceecc
Q 000149 1745 SDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2037)
Q Consensus 1745 ~~~v~I~~f~-~~v~V~~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~t 1821 (2037)
.+.+.|.++. +++.|++|+++|++|++.|+| |+.|.+|+|++||||||+++||++++||++|+++. .+|++++
T Consensus 54 ~p~~~~~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~~----ldL~l~~ 129 (353)
T cd05166 54 NPALDVKGIDVRECSYFNSNALPLKISFVNADPMGENISVIFKAGDDLRQDMLVLQMINIMDKIWLQEG----LDLRMIT 129 (353)
T ss_pred CCceEEEeEEcCceEEeccccCceEEEEEecCCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCC----CCceeEE
Confidence 3556788885 799999999999999999999 99999999999999999999999999999999864 6899999
Q ss_pred ceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHH
Q 000149 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2037)
Q Consensus 1822 y~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~ 1901 (2037)
|.|+|+++++|+||||+|+.|+++|.+++ |.. +. ++ .+.+++||..
T Consensus 130 Y~vip~~~~~GlIE~V~ns~tl~~I~~~~----g~~-----------------~~------~~-------~~~l~~~l~~ 175 (353)
T cd05166 130 FRCLSTGYDRGMVELVPDAETLRKIQVEE----GLT-----------------GS------FK-------DRPIAKWLMK 175 (353)
T ss_pred EEEEEcCCCcceEEEeCCchhHHHHHHHh----Ccc-----------------cc------cc-------chhHHHHHHH
Confidence 99999999999999999999999997642 110 00 00 1368899999
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC--CCCCCCcccChhHH
Q 000149 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQVRK 1979 (2037)
Q Consensus 1902 ~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~--~pE~VPFRLT~nmv 1979 (2037)
.+|++.+|..+|.+|++|+|+|||+|||||+||||++||||| .+|+++|||||++|++++.+. .||.||||||++|+
T Consensus 176 ~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~~~~E~~PFrLT~emv 254 (353)
T cd05166 176 HNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMA 254 (353)
T ss_pred hCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhcccccccccCCCCCCCccccHHHH
Confidence 999999999999999999999999999999999999999999 699999999999999987654 49999999999999
Q ss_pred h-hcccc------hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1980 S-YGLCA------MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1980 d-~G~~g------~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+ +|..| ..|...+..+|..+|+ .+..++++|. +|-+||++.
T Consensus 255 ~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml-~s~lp~~~~ 305 (353)
T cd05166 255 YVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMA-CSGLPELSK 305 (353)
T ss_pred HHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHh-cCCCcccCc
Confidence 9 54332 2456677789999999 7778888885 588999984
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any |
| >cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-47 Score=454.10 Aligned_cols=240 Identities=19% Similarity=0.296 Sum_probs=208.1
Q ss_pred CCCCcEEeee-ccceEEecCCCceeEEEEEecC-----CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccc
Q 000149 1744 ASDLPTISGI-ADEAEILSSLQRPKKIVLLGSD-----GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKL 1817 (2037)
Q Consensus 1744 ~~~~v~I~~f-~~~v~V~~S~~~Prki~i~Gsd-----Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L 1817 (2037)
..+.++|.++ .+++.|++|+++|++|++.|+| |+.|.+|+|++||||||+++||++++||++|+++. .+|
T Consensus 58 l~P~~~v~~i~~~~~~v~~Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~~----ldL 133 (366)
T cd05165 58 LNPSLKLGELRIEKCKVMDSKKKPLWLVFENADPTALSNENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEEG----LDL 133 (366)
T ss_pred CCCceeEeeeecCceEEehhhcCCcEEEEEccCcccccCCceeEEEecCCcccHHHHHHHHHHHHHHHHHhCC----CCc
Confidence 3567889998 4679999999999999999998 69999999999999999999999999999999874 689
Q ss_pred eeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHH
Q 000149 1818 YIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHK 1897 (2037)
Q Consensus 1818 ~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~ 1897 (2037)
++++|+|+|+++++|+||||+|+.|+++|.++... .. . + .|+ .+.+++
T Consensus 134 ~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~~----~~----~-----------~------~f~-------~~~l~~ 181 (366)
T cd05165 134 RMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETGG----NA----T-----------A------AFK-------KEALLH 181 (366)
T ss_pred eeEEEEEEEecCCceEEEEeCCchhHHHHHHhccc----cc----c-----------c------ccC-------cHHHHH
Confidence 99999999999999999999999999999765311 00 0 0 000 136789
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC-CC-CCCCCCcccC
Q 000149 1898 WFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LE-KPELVPFRLT 1975 (2037)
Q Consensus 1898 ~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~-l~-~pE~VPFRLT 1975 (2037)
||.+.+|++..|.++|.+|++|+|+||++|||||+||||++||||| .+|+++|||||++|+++++ +. .||.||||||
T Consensus 182 wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~-~~G~l~HIDFG~ilg~~~~~~~i~~E~~PFkLT 260 (366)
T cd05165 182 WLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVK-ETGQLFHIDFGHILGNYKSKFGINRERVPFVLT 260 (366)
T ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEc-CCCCEEEEehHHhhccCCccCCCCCCCCCeeec
Confidence 9999999889999999999999999999999999999999999999 5999999999999998764 44 4999999999
Q ss_pred hhHHh-hcccc--------hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1976 QVRKS-YGLCA--------MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1976 ~nmvd-~G~~g--------~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
++|++ +|..| -.|...+..+|.++|+ .|..++++|. ++-+||+.+
T Consensus 261 ~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~-~s~ip~~~~ 317 (366)
T cd05165 261 PDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMML-MSGLPELTS 317 (366)
T ss_pred HHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHh-cCCCcccCc
Confidence 99999 66544 3567778899999999 7777788886 588999984
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P |
| >cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-47 Score=445.97 Aligned_cols=223 Identities=23% Similarity=0.364 Sum_probs=199.3
Q ss_pred CCceeEEEEEecCCC--eeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCC
Q 000149 1763 LQRPKKIVLLGSDGI--KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840 (2037)
Q Consensus 1763 ~~~Prki~i~GsdGk--~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~ 1840 (2037)
++|||+.+.+|+.+. .|+||+|++||||||+++||++++||++|+++ +++|++++|+|+|+++++||||||+|+
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~----~l~l~l~~Y~vip~~~~~GlIE~V~ns 90 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKTGDDLRQELLAMQLIQQFDRIFKEE----GLPLWLRPYEILVTSSNSGLIETIPDT 90 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHC----CCCceeeeEEEEEccCCceeEEEeCCc
Confidence 789999999998765 99999999999999999999999999999986 478999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCCh-hHHHHHHHHHHHH
Q 000149 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEP-AAWFRARVAYAHT 1919 (2037)
Q Consensus 1841 ~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p-~~w~~aR~~Ft~S 1919 (2037)
.|+++|.+++.. ..++|++||.+.|++| ..|..+|.+|++|
T Consensus 91 ~tl~~i~k~~~~--------------------------------------~~~~l~~~f~~~~~~~~~~~~~a~~nF~~S 132 (293)
T cd05168 91 VSIDSLKKKLTS--------------------------------------KFKSLLDFFKKTFGDPSERFREAQKNFIES 132 (293)
T ss_pred hhHHHHHHHhcc--------------------------------------CCchHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999999766311 1257899999999986 5799999999999
Q ss_pred HHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccch----hhHHHHHh
Q 000149 1920 TAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAM----HFIVILSP 1994 (2037)
Q Consensus 1920 lAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~----e~~~~~~~ 1994 (2037)
+|+|||+||||||||||++|||||+ +|+++|||||++|+++++...||.||||||++|++ +|..+. .|...+..
T Consensus 133 ~A~ySvv~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~~ 211 (293)
T cd05168 133 LAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFLK 211 (293)
T ss_pred HHHHHHHHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHHH
Confidence 9999999999999999999999996 99999999999999999988899999999999999 676553 35677778
Q ss_pred hHHHhhh---hhhHhhcccCCCCccchhhhhhhhhhh
Q 000149 1995 LFFPLKK---ILIYVCLVPQPSSFYSCEYSLMEHIEH 2028 (2037)
Q Consensus 1995 ~f~~~~k---~~~~~~~l~~~~s~~~~~~~~~~~~~~ 2028 (2037)
+|.++|+ .+..++++|..++-+|||..+.+.++.
T Consensus 212 ~~~~LR~~~~~il~ll~~m~~~~~lp~f~~~~~~i~~ 248 (293)
T cd05168 212 GFMALRKHVDRIILLVEIMQSDSKLPCFKAGEFTIQQ 248 (293)
T ss_pred HHHHHHhchHHHHHHHHHHccCCCCccccCchHHHHH
Confidence 8999999 888899999999999999865555543
|
PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII |
| >cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=447.05 Aligned_cols=238 Identities=20% Similarity=0.351 Sum_probs=208.5
Q ss_pred CCCcEEeeec-cceEEecCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceecc
Q 000149 1745 SDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2037)
Q Consensus 1745 ~~~v~I~~f~-~~v~V~~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~t 1821 (2037)
.+.+.|.+|. +++.|++|+++|+++++.++| |+.|++|+|.+||||||++++|++++||++|+++. .+|++++
T Consensus 55 ~P~~~i~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~~----ldl~l~p 130 (354)
T cd05177 55 NPALRVKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIWLQEG----LDMQMII 130 (354)
T ss_pred CCCeEEEEEecCccEEehhhcCCCEEEEEecCCCCCeEEEEEeCCCcccHHHHHHHHHHHHHHHHHHcC----CCceEEE
Confidence 5678999996 589999999999999999999 89999999999999999999999999999999874 6899999
Q ss_pred ceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHH
Q 000149 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2037)
Q Consensus 1822 y~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~ 1901 (2037)
|+|+|+++++|+||||+|+.|+++|.+++ |... . ++ ...+.+||..
T Consensus 131 Y~vl~t~~~~GlIE~V~ns~tl~~I~~~~----~~~~-----------------~------~~-------~~~l~~~~~~ 176 (354)
T cd05177 131 YRCLSTGKTQGLVQMVPDAVTLAKIHRES----GLIG-----------------P------LK-------ENTIEKWFHM 176 (354)
T ss_pred EEEEecCCCceEEEEeCChHhHHHHHHhh----CCCc-----------------c------cc-------hhhHHHHHHH
Confidence 99999999999999999999999998652 1100 0 00 1257889999
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC--CCCCCCcccChhHH
Q 000149 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQVRK 1979 (2037)
Q Consensus 1902 ~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~--~pE~VPFRLT~nmv 1979 (2037)
.++++.+|..++.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|++++++. .||+||||||++|+
T Consensus 177 ~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~~HIDFG~ilg~~~~~~~~~~E~~PF~LT~emv 255 (354)
T cd05177 177 HNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHMFHIDFGKFLGHAQTFGSIKRDRAPFIFTSEME 255 (354)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCEEEEehHHhcCCCccccCCCcCCCCeeccHHHH
Confidence 999999999999999999999999999999999999999999 699999999999999998764 49999999999999
Q ss_pred h-hcccch------hhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhhh
Q 000149 1980 S-YGLCAM------HFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYSL 2022 (2037)
Q Consensus 1980 d-~G~~g~------e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~~ 2022 (2037)
+ +|..|. .|...+..+|..+|+ .|..+.++|- ++-+||+...
T Consensus 256 ~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~-~s~iP~~~~~ 307 (354)
T cd05177 256 YFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMML-HAGLPELKDI 307 (354)
T ss_pred HHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh-cCCCcccCcc
Confidence 7 444443 245566688999999 7778888887 7799999853
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n |
| >cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=450.04 Aligned_cols=234 Identities=21% Similarity=0.319 Sum_probs=205.8
Q ss_pred cCCCCcEEeeec-cceEEecCCCceeEEEEEecCC---CeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccce
Q 000149 1743 SASDLPTISGIA-DEAEILSSLQRPKKIVLLGSDG---IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLY 1818 (2037)
Q Consensus 1743 p~~~~v~I~~f~-~~v~V~~S~~~Prki~i~GsdG---k~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~ 1818 (2037)
|..+.+.|.++. +++.|++|+++|+++++.|+|| +.|.||+|++||||||+++||++++||.+|+++. ++|+
T Consensus 56 P~dp~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~----ldl~ 131 (350)
T cd00896 56 PLDPSIEITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKEN----LDLK 131 (350)
T ss_pred CCCCCeEEEEEecCceEEeccccCceEEEEEeCCCCCCceEEEEecCCcchhHhHHHHHHHHHHHHHHHhCC----CCce
Confidence 335668888875 6899999999999999999999 9999999999999999999999999999999874 7899
Q ss_pred eccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHH
Q 000149 1819 IRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKW 1898 (2037)
Q Consensus 1819 i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~ 1898 (2037)
++||+|+|+++++||||||+ +.|+++|++++. .+.+|
T Consensus 132 l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~------------------------------------------~l~~~ 168 (350)
T cd00896 132 LTPYKVLATSPTDGLVEFIP-SVTLASILKKYG------------------------------------------GILNY 168 (350)
T ss_pred eEEEEEEEcCCCCcceEEEe-cccHHHHHHHHH------------------------------------------HHHHH
Confidence 99999999999999999999 999999987631 14678
Q ss_pred HHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCccc
Q 000149 1899 FLTTFSEPAA----WFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRL 1974 (2037)
Q Consensus 1899 f~~~f~~p~~----w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRL 1974 (2037)
|...+|++.. |..+|.+|++|+|+|||+||||||||||++||||| .+|+++|||||++|++++ +|+.|||||
T Consensus 169 l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~-~~G~~~HIDFG~ilg~~p---~~~~~PFrL 244 (350)
T cd00896 169 LRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLT-KDGKLFHIDFGYILGRDP---KPFPPPMKL 244 (350)
T ss_pred HHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEc-CCCCEEEEEhHHhhCCCC---CCCCCCeec
Confidence 8888888877 47999999999999999999999999999999999 699999999999999985 488899999
Q ss_pred ChhHHh-hcccchhh----HHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh-hhhhhhh
Q 000149 1975 TQVRKS-YGLCAMHF----IVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS-LMEHIEH 2028 (2037)
Q Consensus 1975 T~nmvd-~G~~g~e~----~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~-~~~~~~~ 2028 (2037)
|++|++ +|..|.++ ...+..+|..+|+ .+..++++|- ++-+||++. +.+.|++
T Consensus 245 T~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~-~~~ip~~~~~~~~~i~~ 306 (350)
T cd00896 245 CKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMV-DANIPDIALDPDKAILK 306 (350)
T ss_pred cHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHc-CCCCcccccCHHHHHHH
Confidence 999999 77766654 6666788899999 7777888885 667999984 4455543
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin |
| >cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-46 Score=446.25 Aligned_cols=238 Identities=20% Similarity=0.310 Sum_probs=208.4
Q ss_pred CCCcEEeee-ccceEEecCCCceeEEEEEecCC-----CeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccce
Q 000149 1745 SDLPTISGI-ADEAEILSSLQRPKKIVLLGSDG-----IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLY 1818 (2037)
Q Consensus 1745 ~~~v~I~~f-~~~v~V~~S~~~Prki~i~GsdG-----k~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~ 1818 (2037)
.+.+.+.++ .+++.||.|+++|.++++.+.|| ..|++|+|.+||||||+++||++++||++|+++ .++|+
T Consensus 60 ~P~~~~~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~----~ldL~ 135 (365)
T cd00894 60 DPGLRAGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETE----SLDLC 135 (365)
T ss_pred CCceEEEEEEcCceEEEcccCCceEEEEECCCCCccCCCceeEEEeCCCcccHHHHHHHHHHHHHHHHHHc----CCCeE
Confidence 466788888 68899999999999999999887 579999999999999999999999999999876 37899
Q ss_pred eccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHH
Q 000149 1819 IRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKW 1898 (2037)
Q Consensus 1819 i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~ 1898 (2037)
+++|+|+|+++++|+||||+|+.|+++|.+......|. ++ ...+++|
T Consensus 136 l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~~--------------------------~k-------~~~l~~~ 182 (365)
T cd00894 136 LLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTGA--------------------------FK-------DEVLSHW 182 (365)
T ss_pred EEEEEEEEecCCceEEEEcCCchhHHHHHHhccccccc--------------------------cc-------chhHHHH
Confidence 99999999999999999999999999997642111110 11 1368899
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCC-C-CCCCCCcccCh
Q 000149 1899 FLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-E-KPELVPFRLTQ 1976 (2037)
Q Consensus 1899 f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l-~-~pE~VPFRLT~ 1976 (2037)
|.+.+|++..|..++.+|++|+|+||++|||||+||||++||||| .+|+++|||||++|++++.+ . .||+||||||+
T Consensus 183 l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~-~~G~lfHIDFG~ilg~~~~~~gi~~E~~PFkLT~ 261 (365)
T cd00894 183 LKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMIT-ETGNLFHIDFGHILGNYKSFLGINKERVPFVLTP 261 (365)
T ss_pred HHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEc-CCCCEEEEeeHHhhCCCCccCCCCCCCCCeeecH
Confidence 999999999999999999999999999999999999999999999 69999999999999998875 3 49999999999
Q ss_pred hHHh-hcccch-------hhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1977 VRKS-YGLCAM-------HFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1977 nmvd-~G~~g~-------e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+|++ +|..|. .|...+..+|.++|+ .++.++++|.. |-+||+..
T Consensus 262 e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~-sgip~l~~ 316 (365)
T cd00894 262 DFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLM-TGMPQLTS 316 (365)
T ss_pred HHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-CCCcccCc
Confidence 9999 775542 367778899999999 77777888875 89999984
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and |
| >cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=442.06 Aligned_cols=239 Identities=18% Similarity=0.256 Sum_probs=202.1
Q ss_pred CCCcEEeee-ccceEEecCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceecc
Q 000149 1745 SDLPTISGI-ADEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2037)
Q Consensus 1745 ~~~v~I~~f-~~~v~V~~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~t 1821 (2037)
.+.+.+.++ .++++|++|+++|+++++.|.| |+.|++|+|++||||||+++||++++||.+|+++. .+|++++
T Consensus 58 ~p~~~~~~~~~~~~~v~~Sk~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~~----ldL~l~p 133 (361)
T cd05174 58 SPSIILCEVCVDQCTFMDSKMKPLWIMYKNEEAGGGSVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEG----LDLRMTP 133 (361)
T ss_pred CCceEEEEEEcCcEEEEeccCCceEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCC----CCeeeEE
Confidence 345666665 7899999999999999999976 99999999999999999999999999999999864 7899999
Q ss_pred ceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHH
Q 000149 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2037)
Q Consensus 1822 y~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~ 1901 (2037)
|+|+|+++++|+||||+|+.|+++|....... +. . + .+. .+.+.+||.+
T Consensus 134 Y~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~-~~----------~-------~------~f~-------~~~l~~~l~~ 182 (361)
T cd05174 134 YGCLSTGDKTGLIEVVKNSDTIANIQLNKSNM-AA----------T-------A------AFN-------KDALLNWLKS 182 (361)
T ss_pred EEEEEecCCceEEEEeCCchhHHHHHHhhccc-ch----------h-------c------ccc-------chHHHHHHHh
Confidence 99999999999999999999999997642100 00 0 0 010 1367899999
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC--CCCCCCCCcccChhHH
Q 000149 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL--LEKPELVPFRLTQVRK 1979 (2037)
Q Consensus 1902 ~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~--l~~pE~VPFRLT~nmv 1979 (2037)
.+|+ +.|.+++.+|++|+|+||++||||||||||++||||+ .+|+++|||||++|++.++ ...||+||||||++|+
T Consensus 183 ~~~~-~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~e~v 260 (361)
T cd05174 183 KNPG-DALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIR-ESGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFV 260 (361)
T ss_pred cCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEc-CCCCEEEEehHHhhcCCcccCCCCCCCCCeeccHHHH
Confidence 8876 3577889999999999999999999999999999999 5999999999999998654 3469999999999999
Q ss_pred h-hcccc-------hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1980 S-YGLCA-------MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1980 d-~G~~g-------~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+ +|..| ..|...+..+|..+|+ .++.++++|. +|-+||++.
T Consensus 261 ~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~-~sgip~~~~ 312 (361)
T cd05174 261 HVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMK-AAGLPELNC 312 (361)
T ss_pred HHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHh-cCCCCccCc
Confidence 9 64321 1456777799999999 8888899996 699999985
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and |
| >cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-45 Score=434.76 Aligned_cols=237 Identities=22% Similarity=0.327 Sum_probs=205.4
Q ss_pred CCCcEEeee-ccceEEecCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceecc
Q 000149 1745 SDLPTISGI-ADEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2037)
Q Consensus 1745 ~~~v~I~~f-~~~v~V~~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~t 1821 (2037)
.+.+.+.++ .+.+.|++|+++|+++++.++| |+.|++|+|.+||||||+++||++++||++|+++. .+|++++
T Consensus 54 ~p~~~~~~~~~~~c~v~~S~~~Pl~l~f~~~d~~g~~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~~----ldL~l~p 129 (353)
T cd05176 54 SPSLVAKELNIKVCSFFSSNAVPLKIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQEG----LDLRMVI 129 (353)
T ss_pred CcceeEccEehheeEEecccCCceEEEEEccCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCC----CCeEEEE
Confidence 345667776 4678999999999999999999 99999999999999999999999999999998864 6799999
Q ss_pred ceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHH
Q 000149 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2037)
Q Consensus 1822 y~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~ 1901 (2037)
|.|+|+++++|+||||+|+.|+++|...+ ...|.+ + ...+.+|+..
T Consensus 130 Y~vl~tg~~~GlIE~V~ns~tl~~I~~~~-~~~~~~--------------------------~-------~~~l~~~l~~ 175 (353)
T cd05176 130 FKCLSTGKDRGMVELVPASETLRKIQVEY-GVTGSF--------------------------K-------DKPLAEWLRK 175 (353)
T ss_pred EEEEEcCCCceEEEEeCCcHhHHHHHHHh-CcCCcc--------------------------c-------cchHHHHHHH
Confidence 99999999999999999999999997642 111110 0 0246789998
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC--CCCCCCcccChhHH
Q 000149 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQVRK 1979 (2037)
Q Consensus 1902 ~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~--~pE~VPFRLT~nmv 1979 (2037)
.+|++.+|..+|.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|++++.+. .||.||||||++|+
T Consensus 176 ~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~-~~Ghl~HIDFG~ilg~~~~~g~~~~e~~PFkLT~emv 254 (353)
T cd05176 176 YNPAEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLR-STGHMFHIDFGKFLGHAQMFGSFKRDRAPFVLTSDMA 254 (353)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEc-CCCCEEEEeeHHhcCCCccccCCCCCCCCeeecHHHH
Confidence 889999999999999999999999999999999999999998 799999999999999988653 59999999999999
Q ss_pred h-h-cccc-----hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1980 S-Y-GLCA-----MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1980 d-~-G~~g-----~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+ + |..+ ..|..++..+|.++|| .++.++++|. +|-+||+..
T Consensus 255 ~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~-~s~iP~~~~ 305 (353)
T cd05176 255 YVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMT-QSGLPELTG 305 (353)
T ss_pred HHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-CCCCcccCC
Confidence 9 4 3332 2356777799999999 7888899996 699999984
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n |
| >cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=433.63 Aligned_cols=241 Identities=20% Similarity=0.268 Sum_probs=201.8
Q ss_pred CCCCcEEeeec-cceEEecCCCceeEEEEEec--CCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceec
Q 000149 1744 ASDLPTISGIA-DEAEILSSLQRPKKIVLLGS--DGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIR 1820 (2037)
Q Consensus 1744 ~~~~v~I~~f~-~~v~V~~S~~~Prki~i~Gs--dGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ 1820 (2037)
..+.+.|.++. ++++||+|+++|++|++.+. +|..|.+|+|++||||||+++||++++||++|+++ ..+|+++
T Consensus 57 ldP~~~v~~i~~~~~~v~~S~~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~----~ldL~l~ 132 (362)
T cd05173 57 LNPSIILSELNVEKCKYMDSKMKPLWIVYNNKLFGGDSLGIIFKNGDDLRQDMLTLQILRLMDTLWKEA----GLDLRIV 132 (362)
T ss_pred CCCceEEEEEEcCceEEecccCCCeEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHC----CCCeeeE
Confidence 35678899985 56999999999999999875 79999999999999999999999999999999986 3789999
Q ss_pred cceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHH
Q 000149 1821 TFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFL 1900 (2037)
Q Consensus 1821 ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~ 1900 (2037)
+|+|+|+++++|+||||+|+.|+++|..+... .. . .+ .+. .+.+.+||.
T Consensus 133 pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~~----~~---~-----------~~------~f~-------~~~l~~~l~ 181 (362)
T cd05173 133 PYGCLATGDRSGLIEVVSSAETIADIQLNSSN----VA---A-----------AA------AFN-------KDALLNWLK 181 (362)
T ss_pred EEEEEEccCCceEEEEeCCchhHHHHHHhccc----cc---h-----------hc------ccC-------hhHHHHHHH
Confidence 99999999999999999999999999754210 00 0 00 000 136788998
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC--CCCCCCCCcccChhH
Q 000149 1901 TTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL--LEKPELVPFRLTQVR 1978 (2037)
Q Consensus 1901 ~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~--l~~pE~VPFRLT~nm 1978 (2037)
+.+++ ..|..++.+|++|+|+||++||||||||||++||||| .+|+++|||||++|++.++ ...||+||||||++|
T Consensus 182 ~~~~~-~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~em 259 (362)
T cd05173 182 EYNSG-DDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVR-KNGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDF 259 (362)
T ss_pred hcCCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhccCCcccCCCCCCCCeeecHHH
Confidence 86554 4678899999999999999999999999999999999 6999999999999997543 345999999999999
Q ss_pred Hh-h--cccc-----hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhhh
Q 000149 1979 KS-Y--GLCA-----MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYSL 2022 (2037)
Q Consensus 1979 vd-~--G~~g-----~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~~ 2022 (2037)
++ + |..| -.|...+..+|..+|+ .|+.++++|.. +-+||+...
T Consensus 260 v~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~-s~ip~~~~~ 313 (362)
T cd05173 260 IHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLT-AGLPELTSV 313 (362)
T ss_pred HHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc-CCCccccch
Confidence 99 4 5444 2457778899999999 77778888876 779999853
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de |
| >cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-44 Score=422.92 Aligned_cols=229 Identities=21% Similarity=0.358 Sum_probs=200.8
Q ss_pred CCCcEEeee-ccceEEecCC-CceeEEEEEecCCC-------------eeeEEecCCCcchhhHHHHHHHHHHHHHHccC
Q 000149 1745 SDLPTISGI-ADEAEILSSL-QRPKKIVLLGSDGI-------------KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809 (2037)
Q Consensus 1745 ~~~v~I~~f-~~~v~V~~S~-~~Prki~i~GsdGk-------------~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~ 1809 (2037)
.+...+.++ .++.+||.|+ .+|-++++...|+. .+++++|.+||||||+++||++++||++|++.
T Consensus 5 ~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~i~~~~ 84 (311)
T cd05167 5 NPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKNIFQSA 84 (311)
T ss_pred CCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHHHHHHC
Confidence 356778887 5778999997 57999999998764 49999999999999999999999999999976
Q ss_pred CcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcC
Q 000149 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILP 1889 (2037)
Q Consensus 1810 ~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1889 (2037)
+++|++++|+|+|+++++|+||||+|+.|+++|.+..
T Consensus 85 ----~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~--------------------------------------- 121 (311)
T cd05167 85 ----GLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTT--------------------------------------- 121 (311)
T ss_pred ----CCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhc---------------------------------------
Confidence 4789999999999999999999999999998874320
Q ss_pred CCchhHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCC-CC
Q 000149 1890 MFPPVFHKWFLTTFSEP--AAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EK 1966 (2037)
Q Consensus 1890 ~~ppvl~~~f~~~f~~p--~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l-~~ 1966 (2037)
+..+.+||.+.|++| ..|..+|.+|++|+|+||++|||||+||||++|||||. +|+++|||||++|+++|+- ..
T Consensus 122 --~~~l~~~f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~-~G~l~HIDFG~il~~~p~~~~~ 198 (311)
T cd05167 122 --DNGLYEYFTSKYGDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEISPGGNLK 198 (311)
T ss_pred --ccHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEcC-CCCEEEEeeHHhhccCCCCCCC
Confidence 125778999998765 68999999999999999999999999999999999995 9999999999999998764 46
Q ss_pred CCCCCcccChhHHh-hcccc-----hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhh
Q 000149 1967 PELVPFRLTQVRKS-YGLCA-----MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEY 2020 (2037)
Q Consensus 1967 pE~VPFRLT~nmvd-~G~~g-----~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~ 2020 (2037)
||+||||||++|++ +|..+ ..|...+..+|.++|+ .++.++++|- +|.+|||.
T Consensus 199 ~E~~PFkLT~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~-~s~lp~~~ 260 (311)
T cd05167 199 FESAPFKLTKEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELML-DSGLPCFR 260 (311)
T ss_pred cCCCCEeecHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH-cCCchhhh
Confidence 89999999999999 77665 2446667788889999 7888889885 89999998
|
PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole |
| >smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=404.12 Aligned_cols=192 Identities=32% Similarity=0.550 Sum_probs=178.8
Q ss_pred eEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCcc
Q 000149 1780 PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDR 1859 (2037)
Q Consensus 1780 ~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~ 1859 (2037)
.|++|++||+|||+|+||+++++|.+|++++|+++|++++++|.|+|+++++||||||+|+.|+++|
T Consensus 1 ~~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------------- 67 (202)
T smart00146 1 AVIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------------- 67 (202)
T ss_pred CeeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH-------------
Confidence 4899999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 000149 1860 QKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGEN 1939 (2037)
Q Consensus 1860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eN 1939 (2037)
+++||.+.||+|.+|+.+|++|++|+|+||++|||+|+|||||+|
T Consensus 68 -----------------------------------l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~N 112 (202)
T smart00146 68 -----------------------------------LYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHNDN 112 (202)
T ss_pred -----------------------------------HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 457999999999999999999999999999999999999999999
Q ss_pred eeEecCCCcEEEeecccccccCCCCCCC-CCCCcccChhHHh-hcccchhh--HHHHHhhHHHhhh---hhhHhhcccCC
Q 000149 1940 ILFDSTTGDCVHVDFSCLFDKGLLLEKP-ELVPFRLTQVRKS-YGLCAMHF--IVILSPLFFPLKK---ILIYVCLVPQP 2012 (2037)
Q Consensus 1940 ILid~~tG~vvHIDF~~~f~~g~~l~~p-E~VPFRLT~nmvd-~G~~g~e~--~~~~~~~f~~~~k---~~~~~~~l~~~ 2012 (2037)
|||+ +||+++|||||++|++++++..| |.||||||+||++ +|..|.+| ...+...+.++|+ .+..++++|..
T Consensus 113 Ili~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~ 191 (202)
T smart00146 113 IMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELMLY 191 (202)
T ss_pred EEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHcC
Confidence 9999 89999999999999999988776 9999999999999 89888876 5677788888888 77778888888
Q ss_pred CCccchhhh
Q 000149 2013 SSFYSCEYS 2021 (2037)
Q Consensus 2013 ~s~~~~~~~ 2021 (2037)
|. ++|+.+
T Consensus 192 d~-l~~~~~ 199 (202)
T smart00146 192 DG-LPDWRS 199 (202)
T ss_pred CC-ChhhcC
Confidence 87 588765
|
Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities. |
| >cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-44 Score=419.41 Aligned_cols=217 Identities=23% Similarity=0.387 Sum_probs=186.8
Q ss_pred eEEecCC-CceeEEEEEecCC--CeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCcee
Q 000149 1757 AEILSSL-QRPKKIVLLGSDG--IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM 1833 (2037)
Q Consensus 1757 v~V~~S~-~~Prki~i~GsdG--k~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GL 1833 (2037)
.++++|. ..|-.+.+.-.|| +.|+||+|++||||||+++||++++||++|+++ +++|+++||+|+|+++++|+
T Consensus 8 ~k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~----~l~l~l~~Y~vi~~s~~~Gl 83 (289)
T cd00893 8 PKILQSALKIPYLELKKLTDSTLINSEFIVKCGDDLRQDILATQIITELQKIFELM----FLDLWLNPYLVLPVSKTGGI 83 (289)
T ss_pred chHHHHhhcCchhhccCccCCCCeeEEEEEECCCcccHHHHHHHHHHHHHHHHHHc----CCCceeEEEEEEECCCCcee
Confidence 4555655 3466666655555 599999999999999999999999999999876 47899999999999999999
Q ss_pred eEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCC--hhHHHH
Q 000149 1834 VEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSE--PAAWFR 1911 (2037)
Q Consensus 1834 IEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~--p~~w~~ 1911 (2037)
||||+|+.|+++|.+++ .+.+++||.+.|++ +.+|+.
T Consensus 84 IE~V~ns~tl~~i~~~~-----------------------------------------~~~l~~~~~~~~~~~~~~~~~~ 122 (289)
T cd00893 84 IEFIPNSISIHEIKKQQ-----------------------------------------INSLYDYFLELYGSYTTEAFLQ 122 (289)
T ss_pred EEEeCCchhHHHHHHhc-----------------------------------------cccHHHHHHHHcCCCCcHHHHH
Confidence 99999999999997542 01356788888874 567999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCC-CCCCCCCcccChhHHh-hcccchh--
Q 000149 1912 ARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EKPELVPFRLTQVRKS-YGLCAMH-- 1987 (2037)
Q Consensus 1912 aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l-~~pE~VPFRLT~nmvd-~G~~g~e-- 1987 (2037)
+|.+|++|+|+|||+||||||||||++|||||+ +|+++|||||++|+++|+. ..||.||||||++|++ +|..|.+
T Consensus 123 a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~-~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f 201 (289)
T cd00893 123 ARYNFIESMAGYSLLCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhH
Confidence 999999999999999999999999999999995 9999999999999999876 5689999999999999 7766544
Q ss_pred --hHHHHHhhHHHhhh---hhhHhhcccCCCCccchhh
Q 000149 1988 --FIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEY 2020 (2037)
Q Consensus 1988 --~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~ 2020 (2037)
|...+..+|.++|+ .+..++++|. +|-+|||.
T Consensus 202 ~~F~~~c~~~~~~lR~~~~~il~ll~~m~-~~~lp~~~ 238 (289)
T cd00893 202 KKFRYLCLRGFIAVRKHMDLVISLVYLLI-FSGLPCFR 238 (289)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHc-cCCCcccC
Confidence 56777788899999 7778888886 56889998
|
PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. |
| >cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=416.64 Aligned_cols=237 Identities=21% Similarity=0.313 Sum_probs=207.3
Q ss_pred CCCcEEeee-ccceEEecCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceecc
Q 000149 1745 SDLPTISGI-ADEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2037)
Q Consensus 1745 ~~~v~I~~f-~~~v~V~~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~t 1821 (2037)
.+.+++.++ -++..|+.|+.+|.++++.+.| |..|.+++|.|||||||+.++|++++|+++|+++. .+|++++
T Consensus 55 dP~~~v~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~----ldl~l~p 130 (354)
T cd00895 55 SPSLLVKGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQEG----LDMRMVI 130 (354)
T ss_pred CCCeEEEEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHHHcC----CCceEEE
Confidence 466789998 5788999999999999999998 89999999999999999999999999999999974 6799999
Q ss_pred ceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHH
Q 000149 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2037)
Q Consensus 1822 y~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~ 1901 (2037)
|.|+|+++++|+||||+|+.|+++|.... ...|.+ + ...+.+||.+
T Consensus 131 Y~vl~tg~~~G~IE~V~ns~tl~~I~~~~-g~~g~~--------------------------~-------~~~l~~~l~~ 176 (354)
T cd00895 131 FRCFSTGRGRGMVEMIPNAETLRKIQVEH-GVTGSF--------------------------K-------DRPLADWLQK 176 (354)
T ss_pred EEEEecCCCceEEEEeCChhhHHHHHHHh-CcCccc--------------------------c-------cchHHHHHHH
Confidence 99999999999999999999999997642 111110 0 0247889999
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC--CCCCCCcccChhHH
Q 000149 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQVRK 1979 (2037)
Q Consensus 1902 ~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~--~pE~VPFRLT~nmv 1979 (2037)
.+|++.+|..+|.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|++++.+. .+|++||+||++|+
T Consensus 177 ~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~-~~GhlfHIDFG~iLg~~~~~g~~~re~~PF~Lt~emv 255 (354)
T cd00895 177 HNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK-TTGHMFHIDFGRFLGHAQMFGNIKRDRAPFVFTSDMA 255 (354)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEc-CCCCEEEEeeHHhcCCCcccCCCCcCCCCccccHHHH
Confidence 999999999999999999999999999999999999999999 799999999999999887543 59999999999999
Q ss_pred h-hccc---c---hhhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1980 S-YGLC---A---MHFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1980 d-~G~~---g---~e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+ +|.. + ..|...+..+|.++|| .++.++++|. +|-+||+..
T Consensus 256 ~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~-~sgiP~l~~ 306 (354)
T cd00895 256 YVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLML-SCGIPELSD 306 (354)
T ss_pred HHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-cCCCcccCc
Confidence 9 5321 2 2456777799999999 7888899998 588999975
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not |
| >cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=413.71 Aligned_cols=238 Identities=21% Similarity=0.314 Sum_probs=201.7
Q ss_pred CCCcEEeee-ccceEEecCCCceeEEEEEecCC------CeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccc
Q 000149 1745 SDLPTISGI-ADEAEILSSLQRPKKIVLLGSDG------IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKL 1817 (2037)
Q Consensus 1745 ~~~v~I~~f-~~~v~V~~S~~~Prki~i~GsdG------k~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L 1817 (2037)
.+.+.+.++ .++..|++|+.+|.++++.+.|| ..|.+++|.+||||||++++|++++||++|+++. .+|
T Consensus 58 ~P~~~~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~----ldL 133 (366)
T cd05175 58 NPAHQLGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQG----LDL 133 (366)
T ss_pred CCceEEEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHCC----CCe
Confidence 456788888 46889999999999999999998 4699999999999999999999999999999864 789
Q ss_pred eeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHH
Q 000149 1818 YIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHK 1897 (2037)
Q Consensus 1818 ~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~ 1897 (2037)
++++|.|+|+++++|+||||+|+.|+++|..+. |.. +.. .-..+.+++
T Consensus 134 ~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~----~~~-----------------~~~-----------~~~~~~l~~ 181 (366)
T cd05175 134 RMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKG----GLK-----------------GAL-----------QFNSHTLHQ 181 (366)
T ss_pred EEEEEEEEEecCCceEEEEcCCchhHHHHHhcc----ccc-----------------ccc-----------ccCchhHHH
Confidence 999999999999999999999999999996531 100 000 001246888
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC-C-CCCCCCCcccC
Q 000149 1898 WFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-L-EKPELVPFRLT 1975 (2037)
Q Consensus 1898 ~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~-l-~~pE~VPFRLT 1975 (2037)
|+.+.+++ ..|.++|.+|++|+|+||++|||||+||||++||||| .+|+++|||||++|+.+|+ + ..||+||||||
T Consensus 182 ~l~~~~~~-~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~-~~G~l~HIDFG~iLg~~p~~~~~~~E~~PFkLT 259 (366)
T cd05175 182 WLKDKNKG-EMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVK-DDGQLFHIDFGHFLDHKKKKFGYKRERVPFVLT 259 (366)
T ss_pred HHhhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEc-CCCCEEEEehHHhhcCCCccCCCCCCCCCeEec
Confidence 99887764 4699999999999999999999999999999999999 5999999999999998875 3 35999999999
Q ss_pred hhHHh-hccc------ch---hhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1976 QVRKS-YGLC------AM---HFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1976 ~nmvd-~G~~------g~---e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
++|++ +|.. +. .|..++..+|.++|| .++.++++|. +|-+||+..
T Consensus 260 ~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~-~sgiP~l~~ 317 (366)
T cd05175 260 QDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMML-GSGMPELQS 317 (366)
T ss_pred HHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCcccCC
Confidence 99998 4321 22 456677799999999 7777888886 699999985
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=417.58 Aligned_cols=341 Identities=32% Similarity=0.506 Sum_probs=280.2
Q ss_pred hHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchh
Q 000149 1186 CMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMD 1265 (2037)
Q Consensus 1186 ~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~e 1265 (2037)
+++++|||||+|+||.+++++...+.+ +++..+++++.++++++.+++...|+.+|..++..+++.+.+
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~~~~~-----------~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~ 69 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQSNED-----------SPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSE 69 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhhccCC-----------ChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 378999999999999999998876542 347889999999999999999999999999999999999999
Q ss_pred hHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCC
Q 000149 1266 SYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLG 1345 (2037)
Q Consensus 1266 Sy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~ 1345 (2037)
||+++||.+++||+|+||||++++..+.. ......+.+.+.|+.|++.++++++.|++||++|+++|+.....
T Consensus 70 s~~~~y~~l~~lq~L~Elee~~~~~~~~~-------~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~ 142 (352)
T PF02259_consen 70 SYQRAYPSLVKLQQLVELEEIIELKSNLS-------QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLP 142 (352)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhc-------ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999884321 12567889999999999999999999999999999999977777
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC------CChHHHHHHHHHHHcCCchHHHHHHHHHhhc-CCcccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG------APNVHMEKAKLLWSTRRSDGAIAELQQNLLN-KPVEVVGS 1418 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~------~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~-~~~~~~g~ 1418 (2037)
.+++.+|+++|++|||+|++++|.+++.++...+ .|.+.+|+||++|++|++.+|++.|+..+++ +.... +.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~-~~ 221 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI-DS 221 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc-cc
Confidence 8999999999999999999999999999999876 8999999999999999999999999999883 22111 10
Q ss_pred cccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccchHHHHHHHH
Q 000149 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT----GQKQKEDVITLYSRVRELQPMWEKGYFYMA 1494 (2037)
Q Consensus 1419 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s----~~~~~~~i~~~Y~~A~~l~~~weK~~~~la 1494 (2037)
......... ... ........+........+|++++++|+|.+.. +....+++.+.|++|++++|+|+|+||+||
T Consensus 222 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 222 ISNAELKSG-LLE-SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccHHHHhhc-ccc-ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 000000000 000 00000001112335568899999999999999 888899999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHH
Q 000149 1495 KYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLT 1552 (2037)
Q Consensus 1495 ~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLt 1552 (2037)
+|+|+++......+... ......+|+..||.||++|+.+|++++++++|||||
T Consensus 300 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ai~~y~~al~~~~~~~~~~~~RlLt 352 (352)
T PF02259_consen 300 LFNDKLLESDPREKEES-----SQEDRSEYLEQAIEGYLKALSLGSKYVRQDLPRLLT 352 (352)
T ss_pred HHHHHHHHhhhhccccc-----chhHHHHHHHHHHHHHHHHHhhCCCchHHHhhHhcC
Confidence 99999985433211110 002345799999999999999999999999999986
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=381.24 Aligned_cols=221 Identities=33% Similarity=0.627 Sum_probs=159.1
Q ss_pred eeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCC
Q 000149 1778 KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKF 1857 (2037)
Q Consensus 1778 ~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~ 1857 (2037)
.|+||+|++||+|||+|+||+++++|.+|.++.++++ +++|.|+|+++++||||||+++.|+++|+.+++.+.+..
T Consensus 1 ~y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~ 76 (235)
T PF00454_consen 1 EYSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHS 76 (235)
T ss_dssp -EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTT
T ss_pred CceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhcccccccccc
Confidence 4999999999999999999999999999999987755 999999999999999999999999999999876654433
Q ss_pred ccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 000149 1858 DRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHG 1937 (2037)
Q Consensus 1858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~ 1937 (2037)
... +. .+.... ..........++.+.+||...+++++.|+.+|++|++|+|++|++|||+|+|||||
T Consensus 77 ~~~---~~-~~~~~~---------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~ 143 (235)
T PF00454_consen 77 NDN---PS-RKYKAK---------LFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHP 143 (235)
T ss_dssp CSC-------------------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--T
T ss_pred ccc---cc-cccccc---------cccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCc
Confidence 211 00 000000 01112223345699999999999999999999999999999999999999999999
Q ss_pred CceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-h----cccchhh--HHHHHhhHHHhhh---hhhHhh
Q 000149 1938 ENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-Y----GLCAMHF--IVILSPLFFPLKK---ILIYVC 2007 (2037)
Q Consensus 1938 eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~----G~~g~e~--~~~~~~~f~~~~k---~~~~~~ 2007 (2037)
+|||++..||+++|||||++|+ ++.++.||.||||||+||++ + |+.|.+| ...+...+.++|+ .+..+.
T Consensus 144 ~Nili~~~~g~~~hIDfg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll 222 (235)
T PF00454_consen 144 GNILIDKKTGELIHIDFGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLL 222 (235)
T ss_dssp TTEEE-ETTSEEEE--HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhheeccccceeeeEEeHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999988999999999999999 88888999999999999999 7 8888887 2334455566666 666666
Q ss_pred cccCCCCcc
Q 000149 2008 LVPQPSSFY 2016 (2037)
Q Consensus 2008 ~l~~~~s~~ 2016 (2037)
+++-.|...
T Consensus 223 ~~~~~d~l~ 231 (235)
T PF00454_consen 223 ELFLRDPLI 231 (235)
T ss_dssp HHTTTSCST
T ss_pred HHHHhCCCC
Confidence 666655443
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A .... |
| >KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=362.17 Aligned_cols=214 Identities=22% Similarity=0.354 Sum_probs=190.7
Q ss_pred CCceeEEEEEec--CCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCC
Q 000149 1763 LQRPKKIVLLGS--DGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840 (2037)
Q Consensus 1763 ~~~Prki~i~Gs--dGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~ 1840 (2037)
+.|.|+-+.+|+ ++...+++||.|||||||..+.|++..+.++|.+.. -.||+|+|+|+.++.++||||.|+|+
T Consensus 570 k~RIRktS~Yg~~pnWdL~SVIVKtGdDLrQE~fA~Qli~~f~~IW~Eeg----vplWlRpykIlvtss~sGLIEtI~da 645 (847)
T KOG0903|consen 570 KARIRKTSPYGHLPNWDLRSVIVKTGDDLRQELFAYQLISAFKDIWQEEG----VPLWLRPYKILVTSSDSGLIETIVDA 645 (847)
T ss_pred HHHHhccCccccCCCcceEEEeeecCchHHHHHHHHHHHHHHHHHHHHcC----CcceeeeEEEEEEecCccceeeccch
Confidence 678889999997 678999999999999999999999999999999885 57999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCCh--hHHHHHHHHHHH
Q 000149 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEP--AAWFRARVAYAH 1918 (2037)
Q Consensus 1841 ~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p--~~w~~aR~~Ft~ 1918 (2037)
.|+|+|.+.+-+ . ..|. +|...|.+| ..|..|++||..
T Consensus 646 ~SIHsIKk~l~~----------~-----------------------------~~l~-~F~~~~g~~NS~~yk~AQrNFvq 685 (847)
T KOG0903|consen 646 MSIHSIKKRLPN----------L-----------------------------ASLR-HFFAAFGKPNSEKYKSAQRNFVQ 685 (847)
T ss_pred hhHHHHHHhcch----------h-----------------------------hhHH-HHHHHhCCCCcHHHHHHHHHHHH
Confidence 999999876400 0 0122 445555544 569999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-h-cccch---hhHHHHH
Q 000149 1919 TTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-Y-GLCAM---HFIVILS 1993 (2037)
Q Consensus 1919 SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~-G~~g~---e~~~~~~ 1993 (2037)
|+|+||+|||+|+++|||++||||| ..|||+||||||++++.|+...+|..||+||.++++ | |+.|. +|..++.
T Consensus 686 SlagYSLvcYlLQvKDRHNGNILiD-~EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmgG~~~d~FdyfK~L~l 764 (847)
T KOG0903|consen 686 SLAGYSLVCYLLQVKDRHNGNILID-EEGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMGGLDSDMFDYFKSLML 764 (847)
T ss_pred HHHHHHHHHHhhhcccccCCceEec-CCCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999 799999999999999999999999999999999999 4 56664 4478888
Q ss_pred hhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1994 PLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1994 ~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
.+|+++|| .|+.+||+||..|.+|||++
T Consensus 765 ~gf~a~RKhadrIv~lvEiMq~~S~~pCF~a 795 (847)
T KOG0903|consen 765 QGFMALRKHADRIVLLVEIMQDGSGMPCFRA 795 (847)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCccccc
Confidence 99999999 88999999999999999996
|
|
| >KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-30 Score=311.53 Aligned_cols=399 Identities=21% Similarity=0.275 Sum_probs=261.8
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhhc
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSRI 1606 (2037)
.|++-|++|+.+....-..-..+++-=|=.....-..+..++ .-.+..|.......+.....-..+..++||+..+
T Consensus 309 KALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss----~f~~~sVrayavsrl~~a~deelllYL~qlvqal 384 (843)
T KOG0906|consen 309 KALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSS----YFTHPSVRAYAVSRLKGADDEELLLYLLQLVQAL 384 (843)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccc----cccCHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 589999999998876533334566666733221000000000 0012233344444455566667778888888877
Q ss_pred cCCC----hH-----------------------------------------HHHHHHHHHHHHHHhcchhH--HHHHHHh
Q 000149 1607 CHQN----EE-----------------------------------------IVRLVKHIITSVLRQYPQQG--LWIMAAV 1639 (2037)
Q Consensus 1607 ~h~~----~~-----------------------------------------v~~~l~~Ii~~v~~~yPqq~--lw~l~~~ 1639 (2037)
+..+ ++ ...+..-++.+...++--.. +|++.+.
T Consensus 385 ~ye~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~e 464 (843)
T KOG0906|consen 385 KYENGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKVE 464 (843)
T ss_pred HHHhhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEEE
Confidence 7655 11 01345666666666543333 4555444
Q ss_pred hcCCcHHHHHHHHHHHHHHHh---cCCCCCchhhHHHHHHHHHHHHHHHHhccCCccccccchhhhhHHHHhhccCCccc
Q 000149 1640 SKSTIPSRREAAAEIIQAAKK---GSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIM 1716 (2037)
Q Consensus 1640 ~kS~~~~R~~~a~~Il~~~k~---~~~~~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~~~ls~~f~~l~~~~~~~li~ 1716 (2037)
..++. -.++...|+..... ..+.+......+.+-..|+++|.+++........++..-. ..++.+.....-+
T Consensus 465 ~Ed~~--~~kry~si~~~f~~~l~K~~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~---e~L~~lL~~~~~~ 539 (843)
T KOG0906|consen 465 IEDTP--YSKRYLSIMSSFLEALSKRPDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKI---ERLRGLLGDHKHM 539 (843)
T ss_pred ecCCh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHH---HHHHHHHhccccc
Confidence 44332 22234444433322 2222222334566667899999998854322111111101 1122221111111
Q ss_pred ccccccccccCCCCCCCCCCCCCCCccCCCCcEEeee-ccceEEecCCCceeEEEEEecCCC-eeeEEecCCCcchhhHH
Q 000149 1717 PIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGI-ADEAEILSSLQRPKKIVLLGSDGI-KRPFLCKPKDDLRKDSR 1794 (2037)
Q Consensus 1717 piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f-~~~v~V~~S~~~Prki~i~GsdGk-~y~fLvK~~dDlRqD~r 1794 (2037)
++-..--+ ..|+ .+.++|.++ .++.+++.|.-.|-++++...+|. .|+.++|.|||||||+.
T Consensus 540 ~l~~~~~i--------------~lpl--dp~v~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~GDDLrQDql 603 (843)
T KOG0906|consen 540 NLLDVRLI--------------ALPL--DPDVLIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKGDDLRQDQL 603 (843)
T ss_pred ccccceee--------------ccCC--CCCceEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecCcchhHHHH
Confidence 11110111 1222 466899997 678899999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHh
Q 000149 1795 MMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQ 1874 (2037)
Q Consensus 1795 ~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 1874 (2037)
+.|++++|+++|++.+ -+|.+++|+|+|+++.-|++|+|++- ++..|+..+.. +
T Consensus 604 V~Qii~lMd~LLkken----lDLkLtpYkVLatg~~eG~vefI~s~-~la~Ils~~~~-------------I-------- 657 (843)
T KOG0906|consen 604 VLQIIRLMDRLLKKEN----LDLKLTPYKVLATGPKEGFVEFIPSK-PLARILSEYHS-------------I-------- 657 (843)
T ss_pred HHHHHHHHHHHhcccc----ccccceeeEEeccCCCcccEEeecCC-cHHHHHHHHHH-------------H--------
Confidence 9999999999999986 67999999999999999999999874 89888876422 0
Q ss_pred cCCChhHHHHHhhcCCCchhHHHHHHHhCCCh----hHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEE
Q 000149 1875 GKIPEDEMLKTKILPMFPPVFHKWFLTTFSEP----AAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCV 1950 (2037)
Q Consensus 1875 ~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p----~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vv 1950 (2037)
..|+.+..|+- .-=...+++|.+|||.||+++||||+||||++|+|+. .+|+.+
T Consensus 658 ---------------------~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT-~dGk~F 715 (843)
T KOG0906|consen 658 ---------------------LMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLT-KDGKLF 715 (843)
T ss_pred ---------------------HHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEc-cCCcEE
Confidence 11222222221 1125678999999999999999999999999999998 699999
Q ss_pred EeecccccccCCCCCCCCCCCcccChhHHh-h-cccc---hhhHHHHHhhHHHhhh
Q 000149 1951 HVDFSCLFDKGLLLEKPELVPFRLTQVRKS-Y-GLCA---MHFIVILSPLFFPLKK 2001 (2037)
Q Consensus 1951 HIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~-G~~g---~e~~~~~~~~f~~~~k 2001 (2037)
|||||++|+.. ++|-..|.+|++.||+ | |... .+|.+....+|..+|+
T Consensus 716 HiDFgyIlGRD---PKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRR 768 (843)
T KOG0906|consen 716 HIDFGYILGRD---PKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRR 768 (843)
T ss_pred EEeeeeeccCC---CCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 4677889999999999 4 4444 3556667788899998
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=322.25 Aligned_cols=364 Identities=20% Similarity=0.325 Sum_probs=254.8
Q ss_pred HHHHHHhhcCCCCchhhHhhHHHHHhhccCC----ChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcC-CcHHHHHHHHH
Q 000149 1579 VMSIMRGCLKDLPAYQWLTVLPQLVSRICHQ----NEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKS-TIPSRREAAAE 1653 (2037)
Q Consensus 1579 i~~~~~~~~~~lP~~~wlt~lPQLiSRI~h~----~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS-~~~~R~~~a~~ 1653 (2037)
|.+.--.-+.+++....+..+||+|..+.+. .+-|+-+|..-+..+ .+-+..||.+.-..+. ....| .+.
T Consensus 906 VR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl--~~ah~lYWlLk~~l~d~qfs~r---Yq~ 980 (1639)
T KOG0905|consen 906 VRAHAVQWIARLSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSL--QFAHELYWLLKDALDDSQFSLR---YQN 980 (1639)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcch--HHHHHHHHHHhhccccceeehH---HHH
Confidence 3333445678899999999999999999874 322333333333322 3446778988755442 33333 355
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHhcc--CCccccccchhhhhHHHHhhccCCcccccccccccccCCCCC
Q 000149 1654 IIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHA--GQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDA 1731 (2037)
Q Consensus 1654 Il~~~k~~~~~~~~~~~li~~~~~l~~~Li~l~~~~--~~~~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~ 1731 (2037)
++.++..... .+...-+..-.+|+.+|-.++..- ....+|...+......++.. ++++-+..||-.
T Consensus 981 ll~aLl~~~g--k~L~~ef~~Q~~Lv~~L~~iae~Vr~as~s~Rq~vL~~~l~~v~~f--------f~~n~tcrLPL~-- 1048 (1639)
T KOG0905|consen 981 LLAALLDCCG--KNLREEFKKQHKLVNELGSIAEDVRSASGSARQHVLRTGLGRVDSF--------FLQNNTCRLPLC-- 1048 (1639)
T ss_pred HHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhHHHHHHH--------HHhCCceecccC--
Confidence 5555543321 111222333356667776666431 11122222233333332221 111223334421
Q ss_pred CCCCCCCCCCccCCCCcEEeee-ccceEEecCCCceeEEEEEe--cCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHcc
Q 000149 1732 NLTESPSSDIFSASDLPTISGI-ADEAEILSSLQRPKKIVLLG--SDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSK 1808 (2037)
Q Consensus 1732 ~~~~~~~~~pfp~~~~v~I~~f-~~~v~V~~S~~~Prki~i~G--sdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k 1808 (2037)
+...+.++ -++..+++|...|-||+|+| -+|+.++.+.|.+||||||+.++|++++|++||.+
T Consensus 1049 --------------Pal~vkGv~i~~CSyFnSNA~PLKitFvnadp~geni~iIfK~gDDLRQDml~lQmI~iMdkIWl~ 1114 (1639)
T KOG0905|consen 1049 --------------PALDVKGVRIRECSYFNSNALPLKITFVNADPLGENISIIFKCGDDLRQDMLVLQMIRIMDKIWLQ 1114 (1639)
T ss_pred --------------chheeccccccccccccCCCcceEEEEecCCCccccceeeeecCchHHHHHHHHHHHHHHHHHHHh
Confidence 11223333 24667889999999999999 77999999999999999999999999999999999
Q ss_pred CCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhc
Q 000149 1809 YPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKIL 1888 (2037)
Q Consensus 1809 ~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 1888 (2037)
+. -+|.+-+|+++|++-+-|++|-|+|+.||+.|-.+ +.-.|.+. +
T Consensus 1115 eg----LDlrMViFrc~stG~~rgMvElVp~a~TLrKIQve-~GltGsfk--------------------------D--- 1160 (1639)
T KOG0905|consen 1115 EG----LDLRMVIFRCLSTGYDRGMVELVPNAETLRKIQVE-EGLTGSFK--------------------------D--- 1160 (1639)
T ss_pred cC----CceeEEEEEeecccccccceeecccHHHHHHHHHH-hccccccc--------------------------c---
Confidence 85 67999999999999999999999999999999654 22222221 1
Q ss_pred CCCchhHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCC--C
Q 000149 1889 PMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--K 1966 (2037)
Q Consensus 1889 ~~~ppvl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~--~ 1966 (2037)
..+.+|+.+..|++.+|-.|..||+.|+|.||+++||||++|||++|||+. +||+++|||||-.++....|. +
T Consensus 1161 ----~pla~WL~KhNp~e~eYekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~-~sGHmFHIDFGKFLGhaQMfg~fK 1235 (1639)
T KOG0905|consen 1161 ----RPLAKWLMKHNPSEFEYEKAVENFIYSCAGWCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGGFK 1235 (1639)
T ss_pred ----chHHHHHHhcCCCHHHHHHHHHHHHHhcccceeeeEeeecccccCCceEEe-ccCcEEEEehhhhcchHHHhcccc
Confidence 157889999999999999999999999999999999999999999999997 799999999999888876664 4
Q ss_pred CCCCCcccChhHHh---hc-ccchh---hHHHHHhhHHHhhh---hhhHhhcccCC
Q 000149 1967 PELVPFRLTQVRKS---YG-LCAMH---FIVILSPLFFPLKK---ILIYVCLVPQP 2012 (2037)
Q Consensus 1967 pE~VPFRLT~nmvd---~G-~~g~e---~~~~~~~~f~~~~k---~~~~~~~l~~~ 2012 (2037)
..++||-+|-+|.- .| -.... |..+.-.+|.-+|| .+..++.+|-.
T Consensus 1236 RDRaPFVfTSdMayvINgG~kpt~~fq~FVDlCCrAyNiiRK~t~lllnlL~lM~~ 1291 (1639)
T KOG0905|consen 1236 RDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKNTNLLLNLLRLMAC 1291 (1639)
T ss_pred cccCCeEEeccchhhhcCCCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 78999999999976 23 22233 34555578888998 55555555644
|
|
| >KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=322.96 Aligned_cols=367 Identities=17% Similarity=0.296 Sum_probs=235.9
Q ss_pred HHHHhhcCCCCchhhHhhHHHHHhhccCCChHHHHHHHHHHH---HHHHhcchhHHHHHHHhhcCCcHHH-HHHHHHHHH
Q 000149 1581 SIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIIT---SVLRQYPQQGLWIMAAVSKSTIPSR-REAAAEIIQ 1656 (2037)
Q Consensus 1581 ~~~~~~~~~lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~---~v~~~yPqq~lw~l~~~~kS~~~~R-~~~a~~Il~ 1656 (2037)
..--..+...|+..-+..+||||..+....-. .+...|. .-..-+-||.+|.|.+-.--+...- .....+|+.
T Consensus 1354 ~~~~~~l~s~~~~~~~fyvPQiVq~lryDkm~---~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~~~~~~~~~~~~l~ 1430 (1803)
T KOG0902|consen 1354 QYAVRVLRSYSPNEMLFYVPQIVQALRYDKMG---YVEEYILWAAGKSQLFAHQLIWNMKANLYVDEEAIVKADIGEILD 1430 (1803)
T ss_pred HHHHHHHHhCChhhhhhhhHHHHHHHhhcchh---HHHHHHHHHhhhhHHHHHHHHHHhhhhhccccccccchhHHHHHH
Confidence 33334567789999999999999999886633 2233322 2335678999999986432111111 123344444
Q ss_pred HHH----hcCCCCCchhhHHHHHHHHHHHHHHHHhc--cCCc-cccccchhhhhHHHHhhccCCccccccccc-ccccCC
Q 000149 1657 AAK----KGSAHGNSANNLFGQFTSLIDHLIKLCFH--AGQS-KSRTINISTEFSALKRMMPLGIIMPIQQSL-TVTLPP 1728 (2037)
Q Consensus 1657 ~~k----~~~~~~~~~~~li~~~~~l~~~Li~l~~~--~~~~-~~~~~~ls~~f~~l~~~~~~~li~piq~~l-~~~LP~ 1728 (2037)
+++ ...+. ....++..--.+++++..+... |-.. ..++-.+.++.+.+ ++.| ++++|-.-.. .+.+--
T Consensus 1431 ~~~e~i~~~~s~--~a~df~~rEf~ff~~vT~ISg~l~P~~k~~erk~~i~~~l~ki-k~~~-~~YlPs~P~~~v~~i~~ 1506 (1803)
T KOG0902|consen 1431 RVREEITGSLSG--PARDFYEREFDFFNKVTSISGKLKPYPKGDERKKAILEELSKI-KVQP-GCYLPSNPDAVVLDIDY 1506 (1803)
T ss_pred HHHHHHHhcCCc--hhhHHHHHHhHHHHHhhhccceeecCCCcHHHHHHHHHHHHhh-cccC-ceecCCCCCceEEEeec
Confidence 443 33322 2224444444566666555421 1000 11111122222211 1222 3333321110 000000
Q ss_pred CCCCCCCCCCCCCcc-CCCCcEEeeeccceEEecCCCceeEEEEEecCCCe-------eeEEecCCCcchhhHHHHHHHH
Q 000149 1729 QDANLTESPSSDIFS-ASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIK-------RPFLCKPKDDLRKDSRMMEFTA 1800 (2037)
Q Consensus 1729 ~~~~~~~~~~~~pfp-~~~~v~I~~f~~~v~V~~S~~~Prki~i~GsdGk~-------y~fLvK~~dDlRqD~r~~Ql~~ 1800 (2037)
++-.|.- ....|....|. | ||+.--|-.++. ..-++|-|||+|||....|++.
T Consensus 1507 --------~Sg~plQS~aK~PfmatF~----v-------kr~~~~g~~~~~k~~~~~WQa~IFKvGDDcRQD~LaLQiis 1567 (1803)
T KOG0902|consen 1507 --------KSGTPLQSAAKAPFMATFK----V-------KRLEKDGLQCRSKSQKISWQAAIFKVGDDCRQDMLALQIIS 1567 (1803)
T ss_pred --------CCCccchhhccCCeeEEEe----e-------eeccCCcccccccccchhhhhhhhhcCchHHHHHHHHHHHH
Confidence 0111110 12233444431 1 111111111111 1357899999999999999999
Q ss_pred HHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChh
Q 000149 1801 MINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPED 1880 (2037)
Q Consensus 1801 liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 1880 (2037)
++..+|+.-. -++++-+|+|+|++|.||+||.|||+.|-.++-+. .
T Consensus 1568 lf~~if~~~g----Ld~~lfPYrV~aT~pGcGVIEviPn~~SRdqlGr~--------t---------------------- 1613 (1803)
T KOG0902|consen 1568 LFKNIFQLVG----LDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLGRE--------T---------------------- 1613 (1803)
T ss_pred HHHHHHHHcC----CceEEeeeeeeccCCCCceEEeCCCCccHHHhccc--------c----------------------
Confidence 9999998764 67999999999999999999999999886554221 0
Q ss_pred HHHHHhhcCCCchhHHHHHHHhCCChh--HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeeccccc
Q 000149 1881 EMLKTKILPMFPPVFHKWFLTTFSEPA--AWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF 1958 (2037)
Q Consensus 1881 ~~~~~~i~~~~ppvl~~~f~~~f~~p~--~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f 1958 (2037)
..-|++||...|++-+ .|.+||.||.+|+|+||+++|.|+++|||++||||| .-|+++||||||+|
T Consensus 1614 -----------~~glyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~D-d~G~~iHIDFGf~~ 1681 (1803)
T KOG0902|consen 1614 -----------DNGLYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMID-DQGHIIHIDFGFMF 1681 (1803)
T ss_pred -----------cccHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEc-cCCCEEEEeeeeEE
Confidence 0137789999998754 599999999999999999999999999999999999 79999999999999
Q ss_pred ccCCCC-CCCCCCCcccChhHHh-hc-c----cchhhHHHHHhhHHHhhhhhhHhhcc--cCCCCccchhh
Q 000149 1959 DKGLLL-EKPELVPFRLTQVRKS-YG-L----CAMHFIVILSPLFFPLKKILIYVCLV--PQPSSFYSCEY 2020 (2037)
Q Consensus 1959 ~~g~~l-~~pE~VPFRLT~nmvd-~G-~----~g~e~~~~~~~~f~~~~k~~~~~~~l--~~~~s~~~~~~ 2020 (2037)
+..|+- -..|. ||+||.+|+. +| . ...-|.+++..+|.|.|.+...+|.+ |-.||-+|||.
T Consensus 1682 e~sPGgnl~fE~-~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfr 1751 (1803)
T KOG0902|consen 1682 ESSPGGNLGFEP-PFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFR 1751 (1803)
T ss_pred ecCCCCccCcCC-CccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccC
Confidence 999987 56888 9999999999 55 2 12345788889999999977776666 33679999995
|
|
| >KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-27 Score=295.05 Aligned_cols=360 Identities=20% Similarity=0.279 Sum_probs=244.8
Q ss_pred HHHHhhcCCCCchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcc--hhHHHHHHHhhcCCcHHHHHHHHHHHHHH
Q 000149 1581 SIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYP--QQGLWIMAAVSKSTIPSRREAAAEIIQAA 1658 (2037)
Q Consensus 1581 ~~~~~~~~~lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yP--qq~lw~l~~~~kS~~~~R~~~a~~Il~~~ 1658 (2037)
++--+++..+....++-.+=|||.-+.+..---..+.+-++.|...++- |..+|++++.+... .-..|-.-|++..
T Consensus 629 ~fAV~~L~~Lsdd~l~~YLLqLVQalKyEpylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~--~~~~RfgllLEaY 706 (1076)
T KOG0904|consen 629 AFAVRCLEQLSDDDLLQYLLQLVQALKYEPYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQP--SVQQRFGLLLEAY 706 (1076)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHHHHhccchhHhHHHHHHHHHHhhccccchhhhhhHHHHhccH--HHHHHHHHHHHHH
Confidence 3334456788899999999999999998654445677777777777664 77899998765432 3344455577765
Q ss_pred HhcCCCCCchhhHHHHHHHHHHHHHHHHhccCCccccccchhhhhHHHHhhccCCcccccccccccccCCCCCCCCCCCC
Q 000149 1659 KKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPS 1738 (2037)
Q Consensus 1659 k~~~~~~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~ 1738 (2037)
-..+. .....+-.|. ...++|.++.-.-.. .+.+...+..-..++..+...-....-+.+ .-|
T Consensus 707 lRGc~--~hlk~l~kQv-e~l~kLk~lt~~iK~-~~~K~~~~~~~~~l~~~lr~~~~~~~lq~l--~sP----------- 769 (1076)
T KOG0904|consen 707 LRGCT--HHLKVLTKQV-EALEKLKKLTDLIKL-SAEKEDVSQVKEQLKLCLRQLANSEALQNL--QSP----------- 769 (1076)
T ss_pred HhccH--HHHHHHHHHH-HHHHHHHHHHHHHhh-cCccccHHHHHHHHHHHHHhHHHHHHHHhc--cCC-----------
Confidence 54431 1111222222 233444444321110 000111111111122111110000000000 001
Q ss_pred CCCccCCCCcEEee-eccceEEecCCCceeEEEEEe----cCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCccc
Q 000149 1739 SDIFSASDLPTISG-IADEAEILSSLQRPKKIVLLG----SDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESR 1813 (2037)
Q Consensus 1739 ~~pfp~~~~v~I~~-f~~~v~V~~S~~~Prki~i~G----sdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etr 1813 (2037)
. .+...... .-++.+||.|+.||-.+.+-. +++ ....++|+|||||||....|++++|..+|+.+.
T Consensus 770 L-----dP~~~lgel~iekckvM~SkkrPLwl~~~Np~~~s~~-~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~g--- 840 (1076)
T KOG0904|consen 770 L-----DPSLKLGELIIEKCKVMDSKKRPLWLVFENPDAGSNL-SVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTEG--- 840 (1076)
T ss_pred C-----ChhhhhcchhhhhhhhhhccCCceEEEecCCCcccCC-ceeEEEcCCchHHHHHHHHHHHHHHHHHHHhcC---
Confidence 0 11122222 246889999999999999843 334 678999999999999999999999999999886
Q ss_pred CccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCch
Q 000149 1814 RRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPP 1893 (2037)
Q Consensus 1814 rR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pp 1893 (2037)
-+|.+.+|.++|++...||||.|.|+.|+.+|-.+ .|.. .....|+ +.
T Consensus 841 -lDlrm~PYgcls~Gd~iGlIEVV~~s~TIa~IQ~~----~g~~--------------------~at~afn-------~~ 888 (1076)
T KOG0904|consen 841 -LDLRMLPYGCLSTGDRIGLIEVVRNSETIANIQLN----TGNM--------------------AATAAFN-------KD 888 (1076)
T ss_pred -CCeeccccccccccceeeeEEEecCchhhhhhhhc----cccc--------------------eeeccCC-------HH
Confidence 67999999999999999999999999999888432 1111 0000111 24
Q ss_pred hHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC-CC-CCCCCC
Q 000149 1894 VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LE-KPELVP 1971 (2037)
Q Consensus 1894 vl~~~f~~~f~~p~~w~~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~-l~-~pE~VP 1971 (2037)
.|.+|+.+..|....+-+|-..||.|+|+||+++||||+||||.+|||+. .||.++|||||-+++.+++ |. ..|+||
T Consensus 889 ~L~~WLKekNp~e~kld~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvk-e~GqlFHIDFGHiLGh~KsKlGi~RERvP 967 (1076)
T KOG0904|consen 889 ALLNWLKEKNPGEDKLDAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVK-ETGQLFHIDFGHILGHFKSKLGINRERVP 967 (1076)
T ss_pred HHHHHHhhcCchHHHHHHHHHHHHHhhccceeeeeeecccccccCceEEe-ccCcEEEEEhhhhhccchhhcCcccccCc
Confidence 79999999888877799999999999999999999999999999999998 6999999999999999876 33 499999
Q ss_pred cccChhHHh-h--cc--cch----hhHHHHHhhHHHhhh
Q 000149 1972 FRLTQVRKS-Y--GL--CAM----HFIVILSPLFFPLKK 2001 (2037)
Q Consensus 1972 FRLT~nmvd-~--G~--~g~----e~~~~~~~~f~~~~k 2001 (2037)
|=||++++. + |. ++. .|..+...++.++|+
T Consensus 968 FvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~ 1006 (1076)
T KOG0904|consen 968 FVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRR 1006 (1076)
T ss_pred eEeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999998 3 22 222 235667788889998
|
|
| >PTZ00303 phosphatidylinositol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-24 Score=257.54 Aligned_cols=159 Identities=23% Similarity=0.395 Sum_probs=133.6
Q ss_pred ceeEEEEEecCCCe-----------eeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCcee
Q 000149 1765 RPKKIVLLGSDGIK-----------RPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM 1833 (2037)
Q Consensus 1765 ~Prki~i~GsdGk~-----------y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GL 1833 (2037)
+|.-+.+..-+|.. |.||+|. +|||||+.++|++++|+++|+++. .+|.+.+|+|++++.+.|+
T Consensus 1027 ~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~-gDLRQDQLVLQmIrLMDrLLKkEn----LDLKLTPYRVLATG~dsGL 1101 (1374)
T PTZ00303 1027 APVTSPVTAVNGVSPESLHDSLPQECMFLYKR-ENVERDQLMCISSRLLQMLLSSEI----GNAEMLDYSVLPLSCDSGL 1101 (1374)
T ss_pred cceeeeeeccCCcCccccccccchheeEEEec-CcHHHHHHHHHHHHHHHHHHHhcC----CCccccceEEEeccCCccc
Confidence 67777888888887 9999995 699999999999999999999986 6899999999999999999
Q ss_pred eEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHHHHHH
Q 000149 1834 VEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRAR 1913 (2037)
Q Consensus 1834 IEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w~~aR 1913 (2037)
||.|++. ++.+|.+. .+.+||.. .++ ...
T Consensus 1102 IEfVps~-tLAsI~~~--------------------------------------------~Il~YLr~--~~t----~~~ 1130 (1374)
T PTZ00303 1102 IEKAEGR-ELSNLDNM--------------------------------------------DIASYVLY--RGT----RSC 1130 (1374)
T ss_pred EEEecch-HHHHhhhh--------------------------------------------HHHHHHHh--cCc----HHH
Confidence 9999875 56655321 02234432 222 235
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh
Q 000149 1914 VAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS 1980 (2037)
Q Consensus 1914 ~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd 1980 (2037)
.||++|+|.||+++||||+||||++||||| .+|+++|||||++|+...--+++-.-|-|+-..|..
T Consensus 1131 ~NFi~S~AGYsViTYILgIgDRHngNILId-~dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~e 1196 (1374)
T PTZ00303 1131 INFLASAKLFLLLNYIFSIGDRHKGNVLIG-TNGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLA 1196 (1374)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCCceeEc-CCCCEEEEecceeecCchhhhccCCCceehhHHHHH
Confidence 799999999999999999999999999999 699999999999999775446677788999999877
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=219.80 Aligned_cols=103 Identities=28% Similarity=0.575 Sum_probs=98.7
Q ss_pred hhhhhHHHHHHHHHHhhhhhcCCC---ChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHH
Q 000149 488 LPGFLRNHFVGLLNSIDRKMLHAE---DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHF 564 (2037)
Q Consensus 488 ~~~fl~~~~LGil~~~~~~l~~~~---~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~ 564 (2037)
+++||++|||||++.|++.+.+.. +..+|+++|+||++||+++|+||++++||||||||+||+.|+|++.|++||++
T Consensus 1 ~~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~ 80 (107)
T smart00802 1 LADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHV 80 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 479999999999999999998875 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcchhhHHHHHHHHhhhhcc
Q 000149 565 FIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2037)
Q Consensus 565 fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2037)
||++|++ ++++++++++|++++|+|+
T Consensus 81 ~i~~L~~---~~l~~ll~~~~~~i~~~~~ 106 (107)
T smart00802 81 LIKTLKE---EELGPLLDQIFAAILPLWP 106 (107)
T ss_pred HHHhCCH---HHHHHHHHHHHHHHHHhcc
Confidence 9999976 7999999999999999997
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-23 Score=211.09 Aligned_cols=103 Identities=30% Similarity=0.541 Sum_probs=98.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhcC---CCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHH
Q 000149 488 LPGFLRNHFVGLLNSIDRKMLH---AEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHF 564 (2037)
Q Consensus 488 ~~~fl~~~~LGil~~~~~~l~~---~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~ 564 (2037)
+++||++|||||+++|++++.+ +.+..+|+++|+||++||+++|+||++++||||||||+|++.++|++.|++||++
T Consensus 1 ~~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~ 80 (107)
T PF08064_consen 1 IADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNC 80 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 4799999999999999999987 5678999999999999999989999999999999999999999999999999999
Q ss_pred HHHHhccCCCcchhhHHHHHHHHhhhhcc
Q 000149 565 FIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2037)
Q Consensus 565 fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2037)
||++|++ ++|+|++++|+++++|+|+
T Consensus 81 fi~~L~~---~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 81 FIKTLDE---EDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHCCH---HHHHHHHHHHHHHHHHhcc
Confidence 9999965 8999999999999999997
|
; GO: 0004674 protein serine/threonine kinase activity |
| >COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.7e-06 Score=123.68 Aligned_cols=562 Identities=13% Similarity=0.070 Sum_probs=315.5
Q ss_pred CCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhcc-CChhH
Q 000149 1041 IPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS-LSLQD 1119 (2037)
Q Consensus 1041 Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~-~~l~~ 1119 (2037)
+|...+....-.|..++.++++.|.++-... ....++.+..+..++.+.|..-|+...... ...+-
T Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l 1085 (2105)
T COG5032 1019 LPSLSIGFYESLCSFLAKLLHDEELYFFPLL-------------FVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQL 1085 (2105)
T ss_pred chhhhhhHHHHHHHHHHHHhHHHHHHhcccc-------------hHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhh
Confidence 5665565888899999999999999875421 135678888999999999988885332221 11222
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHh--hhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHV--DGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~--~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
+..++.+.++|.+++.-|...............+.++|....+.|+.....+ ++.....+. ..-..+...-|+|-.|
T Consensus 1086 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~-r~~~~~~~~~~~~~~~ 1164 (2105)
T COG5032 1086 KPHLVKYLQRWYEALNRYFELLSKGDRLFAISFTKLRNVDALGKLELYSSLAEIDMFLSLHRR-RKLLETLVATAYEQVG 1164 (2105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhhhHHHHHHHHHHHHHHhhhhccCcc-hhhhhHHHHHHHHHHH
Confidence 2678899999999999999877764345556678999999999998754433 343333332 1223455677999999
Q ss_pred ChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHH-HHHHHHHhhhhhhh-chhhHHhhhHHHH
Q 000149 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKI-GVSKQVLIAPLAAA-GMDSYTRAYPFIV 1275 (2037)
Q Consensus 1198 ~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I-~~aR~~l~~~L~a~-~~eSy~r~y~~l~ 1275 (2037)
.|+...++.+.+... ..+..|...+ .+.....++........ ..++..+..++... ..+++.+++-...
T Consensus 1165 ~~~~~q~~~e~~~~k-------~~~~~~~~s~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~~w~~a~~~~~ 1235 (2105)
T COG5032 1165 EWYKAQQLYEVAQRK-------ARSKEFPFSL--QYLYWHINDIDCADKLQSVLAELSLVTGISELLLEESWRRALFSNI 1235 (2105)
T ss_pred hHHHHHHHHHHHhhh-------cccccCchhh--HHHHHcccchhhHhhhhhhhhhcccccchhhhccchhHHHHHhhhH
Confidence 999998887765431 1122232221 33444556665555544 34566677777777 4569999998889
Q ss_pred HhhhHHHHHHHHHHhhccccccccCCCChHH--HHHHHHHHHHHhhh---ccCChhhhhhhHHHHHhhcCCCCCCchhHH
Q 000149 1276 KLHLLQELEDFHAILVNDSFLEKSFLPSDLK--FSKLMANWENRLKY---TQPSLWAREPLLAFRRMVFGASGLGAEVGN 1350 (2037)
Q Consensus 1276 kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~--~~~l~~~W~~RL~~---~~~~~~~~e~lLslRr~v~~~~~l~~~~~~ 1350 (2037)
+.+...|+++++....... .....- .....+.|+.++.. +...+..|......+-.+..+. +...
T Consensus 1236 ~~~~~~~~~e~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~ 1305 (2105)
T COG5032 1236 KDSLESELEEIIDGMYKSN------EDFGALMLLSLSAELWDKILEGRSSCSKSIKLSLNIWLDLSIVVSPK----DEPE 1305 (2105)
T ss_pred HhhhhhhhhHHhhhhhhcc------cchHHHHHHHHHHhccchhhcchhhhhHHHHHHHHHHHHHhhhcCHh----hhhh
Confidence 9999999999887442110 011111 34556789999988 7766666654444443333333 2337
Q ss_pred HHHHHHHHHHHcC-ChHHHHHHHHHHh--------------hcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccc
Q 000149 1351 CWLQYAKLCRLAG-HYETATRAILEAQ--------------ASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEV 1415 (2037)
Q Consensus 1351 ~WL~~AklARKag-~~~~A~~aLl~a~--------------~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~ 1415 (2037)
.|.++++.|++.+ +.......+.... ..++|......-+..|+......+..........+...
T Consensus 1306 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1384 (2105)
T COG5032 1306 LFIKFVELCEASSIRSKLLEKNIQELLEKLEEIKSPLGTLRDRLPPPWALLDLKRLLATWRQNAFLRINPELLPLLSSL- 1384 (2105)
T ss_pred HHHHHHHHHhhhhHHHHhcchhHHHHHhccccccchhhhhhhcCCCCchhhhhhhhhhHHHHhhhhhhchhhccccchh-
Confidence 8999999999999 3333333333321 11223344444455555554443333322221111000
Q ss_pred ccccccccccccCCCCCCCCCccccccc-chhhhhHHHHHHHH-HHHH---HHhC-CCCHHHHHHHHHHHHHhccchHHH
Q 000149 1416 VGSTAISSITSLSLVPLNPLPVLSNTQT-LNEKRDIAKTLLLY-SRWI---HYTG-QKQKEDVITLYSRVRELQPMWEKG 1489 (2037)
Q Consensus 1416 ~g~~~~~~~~~l~~~~~~~~~~~~~~q~-~~~~~~~Ak~~Ll~-akwl---~~s~-~~~~~~i~~~Y~~A~~l~~~weK~ 1489 (2037)
.+....+.. .+..+... ..... ...-...|+.+... +.|. .-.. ..+.......|..+..+...|.++
T Consensus 1385 ~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1458 (2105)
T COG5032 1385 LNLQSSSLS-----KQLVSRGS-SESAISINSFASVARKHFLPDNQLKKIYQLSNILISEAFLLLRYLLLCRLGRRELKA 1458 (2105)
T ss_pred hhccchhcc-----ccccccch-hhhhHHHHHHHHHHHHhcCcHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhHHHHH
Confidence 000000000 00000000 00000 00000112222111 2222 1111 123445556677777777788888
Q ss_pred HHH-HHhhhHHHHHHHHhhhhhccc-CCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCC
Q 000149 1490 YFY-MAKYCDDVLVDARKRQEENSE-IGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSS 1567 (2037)
Q Consensus 1490 ~~~-la~y~d~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~ 1567 (2037)
++. |+.-....+.+-.. .... -+... ........+.....+....+.-..+..+|.+.+|...|...
T Consensus 1459 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~------ 1527 (2105)
T COG5032 1459 GLNVWNLTNLELFSDIQE---SEFFEWGKNL--KLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLL------ 1527 (2105)
T ss_pred HHHhhcccchhHHHHHHH---HHHHHhhhhh--HHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhh------
Confidence 887 65444443321110 0000 00000 00111122333333333444445578899999998877521
Q ss_pred ChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhhccCCChHHHHHHHHHHHHHHHhcchhHHHHHHHhhcCCcHHH
Q 000149 1568 SNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSR 1647 (2037)
Q Consensus 1568 ~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq~lw~l~~~~kS~~~~R 1647 (2037)
..++......+.+.. ...|+..+||+..++..........+..++.++++.|||+..+++.+..++....+
T Consensus 1528 ---~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~ 1598 (2105)
T COG5032 1528 ---SAKDAAGSYYKNFHI------FDLEISVIPFIPQLLSSLSLLDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSK 1598 (2105)
T ss_pred ---hHHHHHHhhhhhccc------ccccccccchhhhhhhhcchhHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhh
Confidence 112222222222222 22356656666666666556668889999999999999999999998888777766
Q ss_pred HHHHHHHHHHHHhcC
Q 000149 1648 REAAAEIIQAAKKGS 1662 (2037)
Q Consensus 1648 ~~~a~~Il~~~k~~~ 1662 (2037)
...+..+....+.+.
T Consensus 1599 e~~~~~~~~~~~~~~ 1613 (2105)
T COG5032 1599 ESVALSLENKSRTHD 1613 (2105)
T ss_pred HhHHHHHhhhhhcCC
Confidence 666655655555443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0055 Score=84.73 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=113.6
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCC----h
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS----L 1117 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~----l 1117 (2037)
..++....+.|.|.+|+.+++..+..... ..+.+-.+..+|...++.+....+...- ..+. .
T Consensus 129 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 196 (899)
T TIGR02917 129 ALRGLAYLGLGQLELAQKSYEQALAIDPR------------SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL 196 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 46788889999999999999987654221 1235668889999999999988886532 1121 1
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
......+...|++++|..+|+++++..|++......+..|+...|+++......+.+....|.... .........+..|
T Consensus 197 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 275 (899)
T TIGR02917 197 LLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL-AHYLKALVDFQKK 275 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhc
Confidence 123445678999999999999999999999888888899999999999888887776655554322 2233455678899
Q ss_pred ChhhHHHHhhcc
Q 000149 1198 RWDLMDEYLSGA 1209 (2037)
Q Consensus 1198 ~Wd~lee~l~~~ 1209 (2037)
+++...+.+...
T Consensus 276 ~~~~A~~~~~~~ 287 (899)
T TIGR02917 276 NYEDARETLQDA 287 (899)
T ss_pred CHHHHHHHHHHH
Confidence 998877766543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0017 Score=87.48 Aligned_cols=474 Identities=18% Similarity=0.247 Sum_probs=251.6
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCC----chhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGT----RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL 223 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~----~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~ 223 (2037)
+-+.++.++......+|+--+-.-+||++--+. .++...-+++.+.| +...+...||.++|.++..+-++-+
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~---~~~E~~~~vr~k~~dviAeia~~~l- 112 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEI---IQSETEPSVRHKLADVIAEIARNDL- 112 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHhcc-
Confidence 455677788887788887333333444443333 23333344445455 7788999999999999999775555
Q ss_pred hhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH---HHHHHHHHHHhCCCCcchHHH
Q 000149 224 SSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF---LFLLILLVEQLDNPHVTVRMN 300 (2037)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~---~~~l~~Li~~L~~~n~~~~~~ 300 (2037)
++ +|.+ .+..+.+ -+...|++++|+.+..+..+- ..++...- --.+-+|...++-++..||..
T Consensus 113 -------~e--~WPe--ll~~L~q-~~~S~~~~~rE~al~il~s~~--~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~ 178 (1075)
T KOG2171|consen 113 -------PE--KWPE--LLQFLFQ-STKSPNPSLRESALLILSSLP--ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVA 178 (1075)
T ss_pred -------cc--chHH--HHHHHHH-HhcCCCcchhHHHHHHHHhhh--hhhccccchhHHHHHHHHHHhccCCcchHHHH
Confidence 33 4544 2223334 445567779999988877763 22233222 234455777888888889999
Q ss_pred HHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccC
Q 000149 301 ASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDN 380 (2037)
Q Consensus 301 a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~~ 380 (2037)
|.+-+-..+..+. ..+..++.|+. + +-. .-.++|.++-..+.|
T Consensus 179 a~rA~~a~~~~~~---------------------------~~~~~~~~~~~-l----lP~-----~l~vl~~~i~~~d~~ 221 (1075)
T KOG2171|consen 179 AVRALGAFAEYLE---------------------------NNKSEVDKFRD-L----LPS-----LLNVLQEVIQDGDDD 221 (1075)
T ss_pred HHHHHHHHHHHhc---------------------------cchHHHHHHHH-H----hHH-----HHHHhHhhhhccchH
Confidence 9999888876662 01111222221 0 000 011333333333222
Q ss_pred --hhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhc---cccHHHH--HHHHHHHHhhcCCChH------HHHHhhhHH
Q 000149 381 --DQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALH---QADERRL--LSALEFYCIQTGSDNQ------EIFAAALPA 447 (2037)
Q Consensus 381 --~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~---~~~~~~~--~~~l~~~~~~~~~~~~------~~~~~~~~~ 447 (2037)
..+.+.+.+++.. -.+++.+.+..|+.+-+- ..+-++- --+|.|+....+.-++ .+....+|.
T Consensus 222 ~a~~~l~~l~El~e~----~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~ 297 (1075)
T KOG2171|consen 222 AAKSALEALIELLES----EPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPV 297 (1075)
T ss_pred HHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHH
Confidence 1223444444442 234444555555554441 1111111 1233344333222111 112222233
Q ss_pred HHHHHHHhhcC---------CCchH--HhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHH
Q 000149 448 LLDELICFVDG---------GDSDE--INERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQ 516 (2037)
Q Consensus 448 ~l~ell~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k 516 (2037)
++. ..+...+ -|.|+ ++.+ ...+++..+|.-+.|...++.++ ..+. .++.+.+..+|
T Consensus 298 ~l~-~mte~~~D~ew~~~d~~ded~~~~~~~--~A~~~lDrlA~~L~g~~v~p~~~--------~~l~-~~l~S~~w~~R 365 (1075)
T KOG2171|consen 298 LLA-MMTEEEDDDEWSNEDDLDEDDEETPYR--AAEQALDRLALHLGGKQVLPPLF--------EALE-AMLQSTEWKER 365 (1075)
T ss_pred HHH-hcCCcccchhhccccccccccccCcHH--HHHHHHHHHHhcCChhhehHHHH--------HHHH-HHhcCCCHHHH
Confidence 321 1111111 11111 1111 12455556665555544444332 2333 45566678888
Q ss_pred HHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHH-----HHHHHHhh
Q 000149 517 KQALKRIEILIEMIGSHLTTYVPKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVI-----SQVFAALI 589 (2037)
Q Consensus 517 ~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll-----~~i~~~li 589 (2037)
+-+|.+|+.+-+=|+.++..-+|+|+.....+|+. |..|+.||.+-.-|-. ++.|.+ +++...++
T Consensus 366 ~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st--------dl~p~iqk~~~e~l~~aL~ 437 (1075)
T KOG2171|consen 366 HAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST--------DLQPEIQKKHHERLPPALI 437 (1075)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh--------hhcHHHHHHHHHhccHHHH
Confidence 99999999999999999999999999999999985 4577787776555444 444444 34444555
Q ss_pred hhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCCh
Q 000149 590 PFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENL 669 (2037)
Q Consensus 590 p~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~ 669 (2037)
..++... .+......|..++++.-.--++.+. |.+|.+-+ + .|..-.++.++
T Consensus 438 ~~ld~~~-~~rV~ahAa~al~nf~E~~~~~~l~---------pYLd~lm~--~----------------~l~~L~~~~~~ 489 (1075)
T KOG2171|consen 438 ALLDSTQ-NVRVQAHAAAALVNFSEECDKSILE---------PYLDGLME--K----------------KLLLLLQSSKP 489 (1075)
T ss_pred HHhcccC-chHHHHHHHHHHHHHHHhCcHHHHH---------HHHHHHHH--H----------------HHHHHhcCCch
Confidence 5555432 2333334455566554332345555 23333211 0 34445567788
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000149 670 NVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2037)
Q Consensus 670 ~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2037)
.|+.++.+.+...=..-++.+.. ....++-.|.......+. .+...++-.+-+|+|.||
T Consensus 490 ~v~e~vvtaIasvA~AA~~~F~p-----------Y~d~~Mp~L~~~L~n~~~-~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 490 YVQEQAVTAIASVADAAQEKFIP-----------YFDRLMPLLKNFLQNADD-KDLRELRGKTMECLSLIA 548 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHh-----------HHHHHHHHHHHHHhCCCc-hhhHHHHhhHHHHHHHHH
Confidence 99999999988764444433332 233333333332221110 122467777788999987
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0032 Score=87.03 Aligned_cols=410 Identities=12% Similarity=0.046 Sum_probs=230.2
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCC----h
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS----L 1117 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~----l 1117 (2037)
..++....+.|.|..|+.+++..+..... ....+..|..+|...++++....+.... ..+. .
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIEPD------------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 46788888999999999999987653211 1235667889999999999877776421 1111 2
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
......+...|++++|..+|+++++..|++......+..++...|+++......+......|.....| .....+....|
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 615 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAW-LMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHcC
Confidence 22344567899999999999999999999888888888999999999988888777665555443333 23456677889
Q ss_pred ChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHh
Q 000149 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2037)
Q Consensus 1198 ~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kL 1277 (2037)
+|+...++....-.. .+.+......++.++. ..++..+..+.++.+.. ..+...+.+...-.....
T Consensus 616 ~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~- 681 (899)
T TIGR02917 616 DLNKAVSSFKKLLAL------QPDSALALLLLADAYA--VMKNYAKAITSLKRALE-----LKPDNTEAQIGLAQLLLA- 681 (899)
T ss_pred CHHHHHHHHHHHHHh------CCCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHH-
Confidence 998877766544221 0112223334444442 34555444444433221 111111222222222222
Q ss_pred hhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHH
Q 000149 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2037)
Q Consensus 1278 h~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Ak 1357 (2037)
..+.++...+...... . .+...... .+..+.-....++ .+-+=.+++ ++..... ...+...+.
T Consensus 682 --~~~~~~A~~~~~~~~~--~--~~~~~~~~----~~~~~~~~~~g~~--~~A~~~~~~-~~~~~~~----~~~~~~l~~ 744 (899)
T TIGR02917 682 --AKRTESAKKIAKSLQK--Q--HPKAALGF----ELEGDLYLRQKDY--PAAIQAYRK-ALKRAPS----SQNAIKLHR 744 (899)
T ss_pred --cCCHHHHHHHHHHHHh--h--CcCChHHH----HHHHHHHHHCCCH--HHHHHHHHH-HHhhCCC----chHHHHHHH
Confidence 2233333333321000 0 00111100 0111111111111 111111222 1111110 145677788
Q ss_pred HHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCC
Q 000149 1358 LCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435 (2037)
Q Consensus 1358 lARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~ 1435 (2037)
+.++.|+++.|...+.++.... .+.+....|.++...|+..+|+..+++.++..| .
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-------------------~--- 802 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-------------------D--- 802 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-------------------C---
Confidence 8888888888887777765543 334566677777778888888888877765211 0
Q ss_pred CcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCC
Q 000149 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIG 1515 (2037)
Q Consensus 1436 ~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~ 1515 (2037)
.+.++..+|......++ .+++..|.++.++.|.-...+..+|..+... |
T Consensus 803 --------------~~~~~~~l~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------g 851 (899)
T TIGR02917 803 --------------NAVVLNNLAWLYLELKD---PRALEYAEKALKLAPNIPAILDTLGWLLVEK--------------G 851 (899)
T ss_pred --------------CHHHHHHHHHHHHhcCc---HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--------------C
Confidence 02234444544444444 4477778888888877777776666554211 0
Q ss_pred cchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCc
Q 000149 1516 PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGS 1559 (2037)
Q Consensus 1516 ~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~ 1559 (2037)
-...|+..|-+++..++.. -.....+...++..|.
T Consensus 852 --------~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 852 --------EADRALPLLRKAVNIAPEA-AAIRYHLALALLATGR 886 (899)
T ss_pred --------CHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCC
Confidence 1235888888888877652 2333444555555553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.033 Score=80.59 Aligned_cols=382 Identities=13% Similarity=0.087 Sum_probs=199.3
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhh--hHh-----------H
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK--TWC-----------M 1187 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~--~l~-----------~ 1187 (2037)
...+...|++++|...|+++++..|++.+.+..+-.++...|+++....+.+......|+... .|. .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 566788999999999999999999999988888889999999999888877766554443211 111 1
Q ss_pred HHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhH
Q 000149 1188 QGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSY 1267 (2037)
Q Consensus 1188 ~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy 1267 (2037)
...+++.+.|+++.-.+++...-.. .+.+..-...+|.++ ...++..+..+..+++-.. .+. .
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~--~~~g~~~eA~~~y~~aL~~-----~p~----~ 418 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVA--MARKDYAAAERYYQQALRM-----DPG----N 418 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHh-----CCC----C
Confidence 1235677899999888777654321 011122233455444 4456665555444433221 111 1
Q ss_pred HhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHH-----HHHHHHhhhccCChhhhhhhHHHHHhhcCCC
Q 000149 1268 TRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLM-----ANWENRLKYTQPSLWAREPLLAFRRMVFGAS 1342 (2037)
Q Consensus 1268 ~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~ 1342 (2037)
..++..+..++.-...+++..++...... ......... ..|..+-......=+..+-+=.+++++ .
T Consensus 419 ~~a~~~L~~l~~~~~~~~A~~~l~~l~~~------~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-~-- 489 (1157)
T PRK11447 419 TNAVRGLANLYRQQSPEKALAFIASLSAS------QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-A-- 489 (1157)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCHH------HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-H--
Confidence 12222222332222344444443211000 000000000 001111000000001111222223221 1
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc-c
Q 000149 1343 GLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS-T 1419 (2037)
Q Consensus 1343 ~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~-~ 1419 (2037)
..++....+...|.+..+.|+++.|...+.++.... .+......+.++...|+..+|+..|+.....-...-+.. .
T Consensus 490 -~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 490 -LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred -hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 122234567788888888888888888888876543 445555666677778888888888776432100000000 0
Q ss_pred -c------cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000149 1420 -A------ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2037)
Q Consensus 1420 -~------~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~ 1492 (2037)
. ......+. .-++.... .......+....+++.+|.|+.+.|+ .++++..|+++++.+|....+++.
T Consensus 569 ~~l~~~~~l~~a~~l~-~~G~~~eA---~~~l~~~p~~~~~~~~La~~~~~~g~--~~~A~~~y~~al~~~P~~~~a~~~ 642 (1157)
T PRK11447 569 QRLQSDQVLETANRLR-DSGKEAEA---EALLRQQPPSTRIDLTLADWAQQRGD--YAAARAAYQRVLTREPGNADARLG 642 (1157)
T ss_pred HHHhhhHHHHHHHHHH-HCCCHHHH---HHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0 00000000 00000000 00000111223467788999888776 889999999999999999999999
Q ss_pred HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcC
Q 000149 1493 MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFG 1558 (2037)
Q Consensus 1493 la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g 1558 (2037)
+|..|-..- -...|+..|-+.+...+... ....++-.+|...|
T Consensus 643 la~~~~~~g----------------------~~~eA~~~l~~ll~~~p~~~-~~~~~la~~~~~~g 685 (1157)
T PRK11447 643 LIEVDIAQG----------------------DLAAARAQLAKLPATANDSL-NTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHCC----------------------CHHHHHHHHHHHhccCCCCh-HHHHHHHHHHHhCC
Confidence 987653220 11256667777666554432 12334445555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.02 Score=79.21 Aligned_cols=385 Identities=12% Similarity=0.076 Sum_probs=217.4
Q ss_pred hhhHHHHHHHHhhCCChHHHHHHHHHhc--cC-C---hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHH
Q 000149 1086 DEDVSFLMEIYSFLDEPDGLSGLARLHK--SL-S---LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLL 1159 (2037)
Q Consensus 1086 ~~~~~~L~~IYa~LdEpDg~~Gi~~~r~--~~-~---l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~ 1159 (2037)
...+.-...|+.-.++.+.+..++.... .+ + .......+...|+|.+|...|+++++..|++.+...++..++.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4678888999999999999998876322 11 1 2223456899999999999999999999999999999999999
Q ss_pred hccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcC
Q 000149 1160 NMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKK 1239 (2037)
Q Consensus 1160 ~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~ 1239 (2037)
+.|+++..+...+.+....|+... +..+ ..+....|+.+.-...+...-.. .+.+......++.++. ..+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~l-a~~l~~~g~~~~Al~~l~~al~~------~P~~~~~~~~la~~l~--~~~ 164 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLAL-AYVYKRAGRHWDELRAMTQALPR------APQTQQYPTEYVQALR--NNR 164 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH--HCC
Confidence 999999999999888877776555 4433 34556778877666655443221 1112223333444332 333
Q ss_pred CcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh----------------hHHHHHHHHHHhhccccccccCCCC
Q 000149 1240 DHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH----------------LLQELEDFHAILVNDSFLEKSFLPS 1303 (2037)
Q Consensus 1240 d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh----------------~L~ELee~~~~~~~~~~~~~~~~~~ 1303 (2037)
..+...+.++.+- ..+=..... .......++++. .+.+++....... ..+ ..
T Consensus 165 ~~e~Al~~l~~~~---~~p~~~~~l--~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~-----~~p--~~ 232 (765)
T PRK10049 165 LSAPALGAIDDAN---LTPAEKRDL--EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH-----DNP--DA 232 (765)
T ss_pred ChHHHHHHHHhCC---CCHHHHHHH--HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc-----cCC--cc
Confidence 3333332332110 000000000 000011111111 1111111111100 000 00
Q ss_pred hHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--
Q 000149 1304 DLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-- 1381 (2037)
Q Consensus 1304 ~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p-- 1381 (2037)
.+ .....+-.|+-.+-..-+..+-+-..++ ++......+.....|+ +.+....|+++.|...+.++.+..+.
T Consensus 233 ~~---~~~~a~~d~l~~Ll~~g~~~eA~~~~~~-ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 233 TA---DYQRARIDRLGALLARDRYKDVISEYQR-LKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred ch---HHHHHHHHHHHHHHHhhhHHHHHHHHHH-hhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 01 1111222222222111122223333344 2222211123355665 77888999999999998887654322
Q ss_pred ----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHH
Q 000149 1382 ----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLY 1457 (2037)
Q Consensus 1382 ----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~ 1457 (2037)
......+..+-..|+.++|+..++......|.... ..+... .+ -+.....+++++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~------~~~~~~---~~------------p~~~~~~a~~~~ 365 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR------LYGSPT---SI------------PNDDWLQGQSLL 365 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe------ecCCCC---CC------------CCchHHHHHHHH
Confidence 22333344556889999999999988765432210 000000 00 011234567778
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhc
Q 000149 1458 SRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLH 1537 (2037)
Q Consensus 1458 akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~ 1537 (2037)
|..+...|+ .+++++.|.+++...|.....++.+|.-+...- -...|+..|-+++.
T Consensus 366 a~~l~~~g~--~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g----------------------~~~~A~~~l~~al~ 421 (765)
T PRK10049 366 SQVAKYSND--LPQAEMRARELAYNAPGNQGLRIDYASVLQARG----------------------WPRAAENELKKAEV 421 (765)
T ss_pred HHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHh
Confidence 887777765 788999999999999999999998887553220 11357778888887
Q ss_pred cCCcch
Q 000149 1538 RGHKNL 1543 (2037)
Q Consensus 1538 ~g~~~~ 1543 (2037)
..+.+.
T Consensus 422 l~Pd~~ 427 (765)
T PRK10049 422 LEPRNI 427 (765)
T ss_pred hCCCCh
Confidence 776653
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.012 Score=84.90 Aligned_cols=371 Identities=12% Similarity=0.002 Sum_probs=200.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCChh----
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSLQ---- 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~l~---- 1118 (2037)
..+.+...-|.|..|+-+++..+..... ..+.+..|..+|...++.+........ ...++..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPK------------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 4577788899999999999998765321 134677899999999999988877652 2222110
Q ss_pred --------------HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhh
Q 000149 1119 --------------DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT 1184 (2037)
Q Consensus 1119 --------------~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~ 1184 (2037)
.+...+...|++++|..+|+++++..|++.....++=.++...|+++....+.+..+...|.....
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a 421 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA 421 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 122345688999999999999999999998888888899999999998888877766555543322
Q ss_pred HhHHHHHHHHhcCChhhHHHHhhcccccCccccCCC----CCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhh
Q 000149 1185 WCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSE----SNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLA 1260 (2037)
Q Consensus 1185 l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~----~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~ 1260 (2037)
+ ..+-..++.++++....++....... .....+ .........+.+ ....++..+..+.++++-.. .
T Consensus 422 ~--~~L~~l~~~~~~~~A~~~l~~l~~~~-~~~~~~~~~~l~~~~~~~~a~~--~~~~g~~~eA~~~~~~Al~~-----~ 491 (1157)
T PRK11447 422 V--RGLANLYRQQSPEKALAFIASLSASQ-RRSIDDIERSLQNDRLAQQAEA--LENQGKWAQAAELQRQRLAL-----D 491 (1157)
T ss_pred H--HHHHHHHHhcCHHHHHHHHHhCCHHH-HHHHHHHHHHhhhhHHHHHHHH--HHHCCCHHHHHHHHHHHHHh-----C
Confidence 2 12222334456666555554332100 000000 000011112222 23345544444433332211 0
Q ss_pred hhchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHH-------------HHHhhhccCChhh
Q 000149 1261 AAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANW-------------ENRLKYTQPSLWA 1327 (2037)
Q Consensus 1261 a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W-------------~~RL~~~~~~~~~ 1327 (2037)
+++-.-.+..-.-+....+.+++...+..... ..+ .+.+..-..... -++++....+
T Consensus 492 ---P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~-~~P---~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~--- 561 (1157)
T PRK11447 492 ---PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ-QKP---NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWN--- 561 (1157)
T ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcC---
Confidence 11111112222222233333443333321000 000 111100000000 0011000000
Q ss_pred hhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHH
Q 000149 1328 REPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQN 1407 (2037)
Q Consensus 1328 ~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~ 1407 (2037)
..+..+... ......+..|...+..|+++.|...+.. .-..+...+..|.++...|+..+|+..++.+
T Consensus 562 -~~~~~l~~~---------l~~~~~l~~a~~l~~~G~~~eA~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~a 629 (1157)
T PRK11447 562 -SNIQELAQR---------LQSDQVLETANRLRDSGKEAEAEALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRV 629 (1157)
T ss_pred -hhHHHHHHH---------HhhhHHHHHHHHHHHCCCHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000000000 0012346677788888888888877663 2235567778888888888888888888887
Q ss_pred hhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1408 LLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1408 i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
+...| . ...+++-+|+.+...|+ .+++.+.|..+.+..|.-.
T Consensus 630 l~~~P-------------------~-----------------~~~a~~~la~~~~~~g~--~~eA~~~l~~ll~~~p~~~ 671 (1157)
T PRK11447 630 LTREP-------------------G-----------------NADARLGLIEVDIAQGD--LAAARAQLAKLPATANDSL 671 (1157)
T ss_pred HHhCC-------------------C-----------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHhccCCCCh
Confidence 65311 1 02345566666655554 6778888888888877766
Q ss_pred HHHHHHHhhh
Q 000149 1488 KGYFYMAKYC 1497 (2037)
Q Consensus 1488 K~~~~la~y~ 1497 (2037)
..+..+|.-+
T Consensus 672 ~~~~~la~~~ 681 (1157)
T PRK11447 672 NTQRRVALAW 681 (1157)
T ss_pred HHHHHHHHHH
Confidence 6666666543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.024 Score=76.48 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=66.0
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
+.++...+-+.|++++|..+|++++...|+ ...+.++-.|+..+|+|+..+...+..+...|+..+-+. ....+--.+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~-~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN-RRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHc
Confidence 344566778899999999999999998886 345667788999999999888877776666665544333 345677789
Q ss_pred CChhhHHHHhh
Q 000149 1197 GRWDLMDEYLS 1207 (2037)
Q Consensus 1197 g~Wd~lee~l~ 1207 (2037)
|+|+.-...+.
T Consensus 208 g~~~eA~~~~~ 218 (615)
T TIGR00990 208 GKYADALLDLT 218 (615)
T ss_pred CCHHHHHHHHH
Confidence 99987654443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0066 Score=80.08 Aligned_cols=326 Identities=16% Similarity=0.089 Sum_probs=180.5
Q ss_pred HHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHH---
Q 000149 1046 LARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL--- 1122 (2037)
Q Consensus 1046 La~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil--- 1122 (2037)
.|.-.+--|.+.+|...++.-|++.... ...+..|.+||-+.++..-..-.+-.-..++..+.-+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~------------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ 212 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRN------------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKR 212 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccc------------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 3445555699999999999988864321 2458899999999987665544432211111222122
Q ss_pred ---HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch----hhhhhHh----HH---
Q 000149 1123 ---SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP----QYKKTWC----MQ--- 1188 (2037)
Q Consensus 1123 ---~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p----~~~~~l~----~~--- 1188 (2037)
..++.|+|..|--||.++++..|++.........=++++|++.....-..-+....| ++..+.. .+
T Consensus 213 ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 213 LADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 248999999999999999999999987766666667788887654443333444444 1111100 00
Q ss_pred --HHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHH-------------
Q 000149 1189 --GVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQ------------- 1253 (2037)
Q Consensus 1189 --~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~------------- 1253 (2037)
.-|.| |..++.++..... ..+.-+..+. |-+.|..+..+.....|..-+.
T Consensus 293 ~~~~e~a-----~~~le~~~s~~~~---------~~~~ed~ni~-ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~ 357 (895)
T KOG2076|consen 293 HNERERA-----AKALEGALSKEKD---------EASLEDLNIL-AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD 357 (895)
T ss_pred hhHHHHH-----HHHHHHHHhhccc---------cccccHHHHH-HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh
Confidence 11333 4566666652111 1122233333 2333444444444444444333
Q ss_pred ----HHhhhhhhhch-hhHHhhh-HHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhh
Q 000149 1254 ----VLIAPLAAAGM-DSYTRAY-PFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWA 1327 (2037)
Q Consensus 1254 ----~l~~~L~a~~~-eSy~r~y-~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~ 1327 (2037)
.--.++...+. .||.=-. -.++-|+.|.|.|....+..-.. .+.. ...+...+.....+=|-..+
T Consensus 358 ~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~--~~n~--~~~d~~dL~~d~a~al~~~~----- 428 (895)
T KOG2076|consen 358 ERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV--EDNV--WVSDDVDLYLDLADALTNIG----- 428 (895)
T ss_pred hhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH--HhcC--ChhhhHHHHHHHHHHHHhcc-----
Confidence 00111222222 2444444 66777888877665444332100 0000 01111122222221111111
Q ss_pred hhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHH
Q 000149 1328 REPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQ 1405 (2037)
Q Consensus 1328 ~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~ 1405 (2037)
.+=.+++-...=...-...-+..|.+.|+.-+.-|.++.|..+--.+-.+.+ -++.|--|-|+-..|++++|+.+|+
T Consensus 429 -~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 429 -KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred -cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 2222222111000111112256799999999999999999988887766643 4688888999999999999999998
Q ss_pred HHh
Q 000149 1406 QNL 1408 (2037)
Q Consensus 1406 ~~i 1408 (2037)
..+
T Consensus 508 ~~~ 510 (895)
T KOG2076|consen 508 QII 510 (895)
T ss_pred ccc
Confidence 765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.091 Score=71.03 Aligned_cols=49 Identities=14% Similarity=0.289 Sum_probs=41.2
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHH
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTH 1170 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~ 1170 (2037)
..|.+.|+|++|..+|+.+++.+|++......+-.|+..+|+|+..+..
T Consensus 168 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 168 ACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4467889999999999999999999888877888889999999866543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.033 Score=75.61 Aligned_cols=346 Identities=12% Similarity=0.003 Sum_probs=201.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~----l~ 1118 (2037)
+.+.+..+-|.+..|+-.++......... .+.+..|.-.+-..+++|........- ..|+ ..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~------------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNG------------RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCc------------hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 56788889999999999999877654321 234556667777788888877765521 1221 22
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
.....+...|++++|...|+++++..|++...+..+.+++..+|+++......+.+....|.....+. ..-+.-+.|+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~--~~~~l~~~g~ 192 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIA--TCLSFLNKSR 192 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHH--HHHHHHHcCC
Confidence 23456788999999999999999999999988888899999999999877766655444443322221 1223567888
Q ss_pred hhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh
Q 000149 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2037)
Q Consensus 1199 Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh 1278 (2037)
++.-.+.....-.. ...........++.++ ...++..+..+.+ +..+.. . .... ..+ .
T Consensus 193 ~~eA~~~~~~~l~~-----~~~~~~~~~~~l~~~l--~~~g~~~eA~~~~---~~al~~--~---p~~~-~~~------~ 250 (656)
T PRK15174 193 LPEDHDLARALLPF-----FALERQESAGLAVDTL--CAVGKYQEAIQTG---ESALAR--G---LDGA-ALR------R 250 (656)
T ss_pred HHHHHHHHHHHHhc-----CCCcchhHHHHHHHHH--HHCCCHHHHHHHH---HHHHhc--C---CCCH-HHH------H
Confidence 88877665543210 0000111111122222 2334443333322 222211 1 1110 000 0
Q ss_pred hHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHH
Q 000149 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Akl 1358 (2037)
.|..+ +... + ...+.. .+-+-.+++++ .. .+.....|...+.+
T Consensus 251 ~Lg~~-----l~~~------G---~~~eA~-------------------~~A~~~~~~Al-~l---~P~~~~a~~~lg~~ 293 (656)
T PRK15174 251 SLGLA-----YYQS------G---RSREAK-------------------LQAAEHWRHAL-QF---NSDNVRIVTLYADA 293 (656)
T ss_pred HHHHH-----HHHc------C---CchhhH-------------------HHHHHHHHHHH-hh---CCCCHHHHHHHHHH
Confidence 00000 0000 0 000000 00111122221 11 12335678999999
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000149 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 1436 (2037)
..+.|+++.|...+.++....+ +.+..-.+..+++.|+.++|+..++..+...| .
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-------------------~---- 350 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-------------------V---- 350 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-------------------c----
Confidence 9999999999999999887653 44666789999999999999999998875321 0
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHH-hhhHHHH
Q 000149 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMA-KYCDDVL 1501 (2037)
Q Consensus 1437 ~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la-~y~d~l~ 1501 (2037)
.+.++..+|.-+...|+ .+++++.|+++++.+|+.....|.-+ .-|++.+
T Consensus 351 -------------~~~~~~~~a~al~~~G~--~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~ 401 (656)
T PRK15174 351 -------------TSKWNRYAAAALLQAGK--TSEAESVFEHYIQARASHLPQSFEEGLLALDGQI 401 (656)
T ss_pred -------------chHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHH
Confidence 01123333444445554 88999999999999887544333322 3344443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.045 Score=69.11 Aligned_cols=272 Identities=15% Similarity=0.083 Sum_probs=158.9
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh---hhhhHhHHHHHHHHhcC
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ---YKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~---~~~~l~~~~~EAAWrlg 1197 (2037)
.+.+...|++++|...|+++++..|++...+..+-.++...|+++......+.+....+. ...........+.+..|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 455678899999999999999999999888888899999999999888777665443211 11111223356678889
Q ss_pred ChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHh
Q 000149 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2037)
Q Consensus 1198 ~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kL 1277 (2037)
+++.-.+++...-.. .+........++.+ ....++..+..+..+.+.. .. ....... +..+
T Consensus 122 ~~~~A~~~~~~~l~~------~~~~~~~~~~la~~--~~~~g~~~~A~~~~~~~~~-----~~---~~~~~~~---~~~~ 182 (389)
T PRK11788 122 LLDRAEELFLQLVDE------GDFAEGALQQLLEI--YQQEKDWQKAIDVAERLEK-----LG---GDSLRVE---IAHF 182 (389)
T ss_pred CHHHHHHHHHHHHcC------CcchHHHHHHHHHH--HHHhchHHHHHHHHHHHHH-----hc---CCcchHH---HHHH
Confidence 999888877655321 01111222223332 2334444433333322211 00 0000000 0000
Q ss_pred hhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHH
Q 000149 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2037)
Q Consensus 1278 h~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Ak 1357 (2037)
...+-. .+... . +.......++.-+.. .......|+..++
T Consensus 183 --~~~la~--~~~~~---------~---~~~~A~~~~~~al~~------------------------~p~~~~~~~~la~ 222 (389)
T PRK11788 183 --YCELAQ--QALAR---------G---DLDAARALLKKALAA------------------------DPQCVRASILLGD 222 (389)
T ss_pred --HHHHHH--HHHhC---------C---CHHHHHHHHHHHHhH------------------------CcCCHHHHHHHHH
Confidence 000000 00000 0 001111111111111 0112346888999
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCh---HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCC
Q 000149 1358 LCRLAGHYETATRAILEAQASGAPN---VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNP 1434 (2037)
Q Consensus 1358 lARKag~~~~A~~aLl~a~~~~~p~---~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~ 1434 (2037)
+..+.|+++.|...+.++...+++. +...-+..+...|+.++|+..++.++... |.
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-------------------p~-- 281 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY-------------------PG-- 281 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------CC--
Confidence 9999999999999999987664432 33456788999999999999999876521 10
Q ss_pred CCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHH
Q 000149 1435 LPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490 (2037)
Q Consensus 1435 ~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~ 1490 (2037)
. .....+|+.+...|+ .+++.+.|.++++.+|+....+
T Consensus 282 ------------~----~~~~~la~~~~~~g~--~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 282 ------------A----DLLLALAQLLEEQEG--PEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred ------------c----hHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCcCHHHHH
Confidence 0 123566777766665 7889999999999999876443
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.36 Score=64.34 Aligned_cols=446 Identities=17% Similarity=0.198 Sum_probs=232.4
Q ss_pred hcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhh-HHHHHHHHHHhhhc-CChhHHHHHHHHHHHHHhhh-cccc
Q 000149 200 LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE-LKLLDVIKLAFTAA-DDPLILETLLESTAELMMAV-DVHS 276 (2037)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~d~~i~eTll~~~~~i~~~~-~~~~ 276 (2037)
.+..+-.|+-.+-.+..-+.|-- = |++ ..-+.+- ..|+-++.++.... +++.|+=-++..+|++-.+- ..=.
T Consensus 95 ~s~keq~rdissi~Lktvi~nl~--P-~~~--~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~ 169 (1233)
T KOG1824|consen 95 LSGKEQLRDISSIGLKTVIANLP--P-SSS--SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLP 169 (1233)
T ss_pred ccchhhhccHHHHHHHHHHhcCC--C-ccc--cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCc
Confidence 56666777776666665331100 0 110 1112222 45777778777774 44558877788777763211 0011
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCC
Q 000149 277 QHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGV 356 (2037)
Q Consensus 277 e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~ 356 (2037)
+-....+-+|+-||+++-..||-.|..-|-.+|-.++.-.| ..+-+.+.++|-.++||++-=.
T Consensus 170 ~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly-----------~~li~~Ll~~L~~~~q~~~~rt------ 232 (1233)
T KOG1824|consen 170 NFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY-----------VELIEHLLKGLSNRTQMSATRT------ 232 (1233)
T ss_pred chHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH-----------HHHHHHHHhccCCCCchHHHHH------
Confidence 23445777899999999999999999999998766644322 2444567788888877744311
Q ss_pred ChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCC-------chhHHhhhHHHHHHHHhccccHHHH-HHHHHH
Q 000149 357 ETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTD-------MVPLIVTWIPKVLAFALHQADERRL-LSALEF 428 (2037)
Q Consensus 357 ~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~-------~~~l~~~~~~~Ila~ll~~~~~~~~-~~~l~~ 428 (2037)
-++.|.+|+++-+.. .+|++.+++-+| +.+++++ +.||+-
T Consensus 233 --------------------------~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~------e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 233 --------------------------YIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI------EEDDDELREYCLQA 280 (1233)
T ss_pred --------------------------HHHHHHHHHHHhcchhhcccchhhHHHHHHhccc------ccCcHHHHHHHHHH
Confidence 123455666655543 344444444333 3344444 677776
Q ss_pred HHhhcCCChHHHHHhhhHHHHHHHHHhhc------CCC-chHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHH
Q 000149 429 YCIQTGSDNQEIFAAALPALLDELICFVD------GGD-SDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLN 501 (2037)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~ell~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~ 501 (2037)
+..+....++++.. ..|.++.-++-++. .++ .|+. ...+.. .+ ++=
T Consensus 281 le~fl~rcp~ei~p-~~pei~~l~l~yisYDPNy~yd~~eDed-----------~~~~ed---~e---Dde--------- 333 (1233)
T KOG1824|consen 281 LESFLRRCPKEILP-HVPEIINLCLSYISYDPNYNYDTEEDED-----------AMFLED---EE---DDE--------- 333 (1233)
T ss_pred HHHHHHhChhhhcc-cchHHHHHHHHHhccCCCCCCCCccchh-----------hhhhhc---cc---cch---------
Confidence 66666666666655 45666643332221 111 1111 000100 00 000
Q ss_pred HhhhhhcCCCChHHH--HHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCC-----
Q 000149 502 SIDRKMLHAEDLSLQ--KQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSP----- 574 (2037)
Q Consensus 502 ~~~~~l~~~~~~~~k--~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~----- 574 (2037)
-++.-.+.+|+.+| |.|.+++..+|---...+..|...+.--|.+-+.+.| ...+..+.++++..|..+.+
T Consensus 334 -~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkERE-EnVk~dvf~~yi~ll~qt~~~~~~~ 411 (1233)
T KOG1824|consen 334 -QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKERE-ENVKADVFHAYIALLKQTRPVIEVL 411 (1233)
T ss_pred -hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCCCCcccc
Confidence 01112233566655 5678999888854433444444444444444442111 24455555666655543222
Q ss_pred ------------cchhhHHHH----HHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccC-----CCCCC
Q 000149 575 ------------SSTKHVISQ----VFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEF-----PLLPS 633 (2037)
Q Consensus 575 ------------~~l~~ll~~----i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~l-----p~Lp~ 633 (2037)
.++ .+|+. |+.++-+.+. +.+-+++.....+|..||.--++.+.+|+..+ +.|++
T Consensus 412 ~d~d~~e~~g~~s~~-~~L~~~~~~iVkai~~qlr---~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~D 487 (1233)
T KOG1824|consen 412 ADNDAMEQGGTPSDL-SMLSDQVPLIVKAIQKQLR---EKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLND 487 (1233)
T ss_pred cCchhhhccCCccch-HHHHhhhHHHHHHHHHHHh---hccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCC
Confidence 111 34443 3344444443 32334678899999999999999999998776 44555
Q ss_pred chhhHHH--------HHHHHHhcCC--CCHHHHHH-HHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCc
Q 000149 634 IAALTEV--------NKAIQEARGP--MTLKDQLL-AAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDL 702 (2037)
Q Consensus 634 ip~L~~v--------~~~l~~~r~~--~~l~~~l~-~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~ 702 (2037)
-...+.. ...+...... -+....+. ..+-.++..-..|..+||--...+.+.-+ .+-.+-.++-.
T Consensus 488 kSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvir----pl~~~~~~d~~ 563 (1233)
T KOG1824|consen 488 KSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIR----PLQPPSSFDAS 563 (1233)
T ss_pred ccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhc----ccCCCccCCCC
Confidence 3333322 1222111100 01111111 12223333334556666655555443322 22121122223
Q ss_pred hhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000149 703 DVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2037)
Q Consensus 703 ~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2037)
+.+.++..+-|.-... +..++++++++-.|+|.+
T Consensus 564 ~~v~~m~~~tl~rL~a---~d~DqeVkeraIscmgq~ 597 (1233)
T KOG1824|consen 564 PYVKTMYDCTLQRLKA---TDSDQEVKERAISCMGQI 597 (1233)
T ss_pred hhHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHH
Confidence 5677777766654433 335689999999999976
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.065 Score=72.86 Aligned_cols=309 Identities=11% Similarity=-0.011 Sum_probs=172.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
-++.+...|++.+|++.|+..++..|++.+....+..|....|+++......+.+....|+...-+. ....+.-..|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~-~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL-LVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHcCCH
Confidence 3566778888888888888888888888877777778888888888887777777666665433332 234556677888
Q ss_pred hhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhh
Q 000149 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2037)
Q Consensus 1200 d~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~ 1279 (2037)
+.-.+.+...-.. .+........+++++ ...++.++..+. .+..+. ..+...+.+. .+..+..
T Consensus 127 ~~Ai~~l~~Al~l------~P~~~~a~~~la~~l--~~~g~~~eA~~~---~~~~~~--~~P~~~~a~~----~~~~l~~ 189 (656)
T PRK15174 127 ATVADLAEQAWLA------FSGNSQIFALHLRTL--VLMDKELQAISL---ARTQAQ--EVPPRGDMIA----TCLSFLN 189 (656)
T ss_pred HHHHHHHHHHHHh------CCCcHHHHHHHHHHH--HHCCChHHHHHH---HHHHHH--hCCCCHHHHH----HHHHHHH
Confidence 8776665543221 011222333444443 234444433332 221111 1111111111 1112333
Q ss_pred HHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHH
Q 000149 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2037)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklA 1359 (2037)
..++++.......... ..+. ...... ....+.-.-.. +..+-+-.+++++ .. ..+....|...+.+.
T Consensus 190 ~g~~~eA~~~~~~~l~-~~~~--~~~~~~----~~l~~~l~~~g--~~~eA~~~~~~al-~~---~p~~~~~~~~Lg~~l 256 (656)
T PRK15174 190 KSRLPEDHDLARALLP-FFAL--ERQESA----GLAVDTLCAVG--KYQEAIQTGESAL-AR---GLDGAALRRSLGLAY 256 (656)
T ss_pred cCCHHHHHHHHHHHHh-cCCC--cchhHH----HHHHHHHHHCC--CHHHHHHHHHHHH-hc---CCCCHHHHHHHHHHH
Confidence 3445554443321000 0000 000000 00000000011 1112233333322 21 223467888999999
Q ss_pred HHcCChHH----HHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCC
Q 000149 1360 RLAGHYET----ATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLN 1433 (2037)
Q Consensus 1360 RKag~~~~----A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~ 1433 (2037)
...|+++. |...+.+|....+ +.+....+.++...|+..+|+..+++++...| .
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-------------------~- 316 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-------------------D- 316 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------C-
Confidence 99999985 6777777766543 35677889999999999999999999875211 1
Q ss_pred CCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1434 PLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1434 ~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
.+.++..+|.-+...|+ .++++..|.++.+.+|.....+...|..+
T Consensus 317 ----------------~~~a~~~La~~l~~~G~--~~eA~~~l~~al~~~P~~~~~~~~~a~al 362 (656)
T PRK15174 317 ----------------LPYVRAMYARALRQVGQ--YTAASDEFVQLAREKGVTSKWNRYAAAAL 362 (656)
T ss_pred ----------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 12345556666666665 78889999999999998665555555433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.12 Score=65.22 Aligned_cols=118 Identities=12% Similarity=-0.010 Sum_probs=85.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-hccCCh------
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSLSL------ 1117 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-r~~~~l------ 1117 (2037)
..+..+..+|.|..|+.+++..+... |. ....+..|..+|...++.+....+... ...+..
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-----PE-------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-----cc-------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 35777889999999999999987642 21 124567788899999998877766542 222211
Q ss_pred ---hHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000149 1118 ---QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2037)
Q Consensus 1118 ---~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl 1174 (2037)
...+..|.+.|++++|..+|+.+++..|.+......+..++...|+|+......+.+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 122456778899999999999999888877777777788888888888766655544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.44 Score=67.21 Aligned_cols=356 Identities=8% Similarity=-0.040 Sum_probs=208.4
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHH
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLS 1123 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~ 1123 (2037)
+.++..+++-|-+.+|=..+++-+....+ +..+....+.|+.+|..-+-+|+-.-+...-..++...+-.
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 449 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGD---------ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ- 449 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcc---------cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH-
Confidence 35677788899999999999997653211 11134567799999988777666655544322222222322
Q ss_pred HHhhcCHHHHH---HHHHHHHccCCC--chhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHH-HHHHHhcC
Q 000149 1124 NKKSGNWAEVF---TSCEQALQMEPT--SVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQG-VQAAWRLG 1197 (2037)
Q Consensus 1124 ~E~~G~W~~A~---~~YE~~Lq~~p~--~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~-~EAAWrlg 1197 (2037)
-.|+..+|. .++..++...|+ +...+..+-.|+.. |+++..+..........|+.. ..++ ..+.-..|
T Consensus 450 --~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~---~~L~lA~al~~~G 523 (987)
T PRK09782 450 --WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW---QHRAVAYQAYQVE 523 (987)
T ss_pred --HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH---HHHHHHHHHHHCC
Confidence 234554444 445555566676 77766777788887 777666654444444455422 2222 22334688
Q ss_pred ChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHh
Q 000149 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2037)
Q Consensus 1198 ~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kL 1277 (2037)
+++...+........ ++........| ...+..++..+....++.+... . .+.....+.....+
T Consensus 524 r~eeAi~~~rka~~~-------~p~~~a~~~la--~all~~Gd~~eA~~~l~qAL~l-----~---P~~~~l~~~La~~l 586 (987)
T PRK09782 524 DYATALAAWQKISLH-------DMSNEDLLAAA--NTAQAAGNGAARDRWLQQAEQR-----G---LGDNALYWWLHAQR 586 (987)
T ss_pred CHHHHHHHHHHHhcc-------CCCcHHHHHHH--HHHHHCCCHHHHHHHHHHHHhc-----C---CccHHHHHHHHHHH
Confidence 888776665543211 01111122233 3334556655544444433221 0 11111111000000
Q ss_pred hhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHH
Q 000149 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2037)
Q Consensus 1278 h~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Ak 1357 (2037)
....+.+++.. .+++++ .. ++. ...|...|.
T Consensus 587 ~~~Gr~~eAl~--------------------------------------------~~~~AL-~l---~P~-~~a~~~LA~ 617 (987)
T PRK09782 587 YIPGQPELALN--------------------------------------------DLTRSL-NI---APS-ANAYVARAT 617 (987)
T ss_pred HhCCCHHHHHH--------------------------------------------HHHHHH-Hh---CCC-HHHHHHHHH
Confidence 00011111111 112211 11 112 457899999
Q ss_pred HHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCC
Q 000149 1358 LCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435 (2037)
Q Consensus 1358 lARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~ 1435 (2037)
+.++.|+++.|..++.+|....+ +.+....+-.+...|+..+|+..++.+++..| .
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-------------------~--- 675 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-------------------D--- 675 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------C---
Confidence 99999999999999999988754 45677788889999999999999999876322 1
Q ss_pred CcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCC
Q 000149 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIG 1515 (2037)
Q Consensus 1436 ~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~ 1515 (2037)
-+.++..+|.-+...|+ .+++...|++|+++.|......+.+|......+
T Consensus 676 --------------~~~a~~nLA~al~~lGd--~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~-------------- 725 (987)
T PRK09782 676 --------------DPALIRQLAYVNQRLDD--MAATQHYARLVIDDIDNQALITPLTPEQNQQRF-------------- 725 (987)
T ss_pred --------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH--------------
Confidence 13456667776666665 788999999999999988777776665543222
Q ss_pred cchhhhhchHHHHHHHHHHHhccCCc
Q 000149 1516 PSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2037)
Q Consensus 1516 ~~~~~~~~~l~~ai~~Yl~sl~~g~~ 1541 (2037)
+...+...|-+...+...
T Consensus 726 --------~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 726 --------NFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred --------HHHHHHHHHHHHhhcCcc
Confidence 234567777777766655
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.18 Score=64.55 Aligned_cols=61 Identities=18% Similarity=0.133 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChH-HHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNV-HMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~-~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
....+..+++|.++|.++.|..++.++....+... .++.|.++++.|++++|.+.-++++.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45678999999999999999999999988765554 48999999999999999999988865
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.86 Score=63.35 Aligned_cols=381 Identities=9% Similarity=-0.015 Sum_probs=209.5
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC-h---hHH
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS-L---QDE 1120 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~-l---~~q 1120 (2037)
...|..-|.+..|+-.++...... | .....+..|..+|...++.+...-.+.. ...+. . ...
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-----~-------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-----Q-------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-----C-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 366778899999998888765411 1 1223477899999999999988877753 12222 1 123
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
+..+-..|+.++|+..++++++..|++.. ...+-.++...|+++..+...+......|+...-+..+ ..+.-..|.-+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~l-a~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEY-VQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHCCChH
Confidence 45567899999999999999999999988 77777788899999988888877777667654333322 33444556665
Q ss_pred hHHHHhhcccccCccccCCCCCc------chHHHHHHHHHHHHcCCcchH---HHHHHHHHHHHhh-hhhhhchhhHHhh
Q 000149 1201 LMDEYLSGADEEGLLCSSSESNA------SFDMDVAKILQAMMKKDHFSV---SDKIGVSKQVLIA-PLAAAGMDSYTRA 1270 (2037)
Q Consensus 1201 ~lee~l~~~~~~gl~~~~~~~~~------~f~~~l~kaLlal~~~d~~~f---~~~I~~aR~~l~~-~L~a~~~eSy~r~ 1270 (2037)
...+.+...... ++. .......++.+.....+...+ .+.++.....+.. +-.+.....+.++
T Consensus 168 ~Al~~l~~~~~~--------p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a 239 (765)
T PRK10049 168 PALGAIDDANLT--------PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA 239 (765)
T ss_pred HHHHHHHhCCCC--------HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH
Confidence 333333322110 000 011111111111000111112 2222222221111 1111111234443
Q ss_pred h-HHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCC-chh
Q 000149 1271 Y-PFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLG-AEV 1348 (2037)
Q Consensus 1271 y-~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~-~~~ 1348 (2037)
+ +.+..|-...+.+++........ ... ...+.. ...|-..+..-..++. +-+-.+++ ++...... ...
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll--~~~--~~~P~~---a~~~la~~yl~~g~~e--~A~~~l~~-~l~~~p~~~~~~ 309 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLK--AEG--QIIPPW---AQRWVASAYLKLHQPE--KAQSILTE-LFYHPETIADLS 309 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhh--ccC--CCCCHH---HHHHHHHHHHhcCCcH--HHHHHHHH-HhhcCCCCCCCC
Confidence 2 21222223334444444332211 000 000110 1112222222222221 11222333 22221111 011
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC------------C-----hHHHHHHHHHHHcCCchHHHHHHHHHhhcC
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA------------P-----NVHMEKAKLLWSTRRSDGAIAELQQNLLNK 1411 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~------------p-----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~ 1411 (2037)
...+..++....+.|+++.|...+.++....+ | .+..-.|.++-..|+..+|+..+++++...
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 23455666666899999999999888765432 1 245678899999999999999999987632
Q ss_pred CcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHH
Q 000149 1412 PVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYF 1491 (2037)
Q Consensus 1412 ~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~ 1491 (2037)
| .+ ..+++.+|.-+...|+ .+++.+.|++|.+++|.-...++
T Consensus 390 P-------------------~n-----------------~~l~~~lA~l~~~~g~--~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 390 P-------------------GN-----------------QGLRIDYASVLQARGW--PRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred C-------------------CC-----------------HHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCChHHHH
Confidence 2 11 2355666666655555 89999999999999999887777
Q ss_pred HHHhhh
Q 000149 1492 YMAKYC 1497 (2037)
Q Consensus 1492 ~la~y~ 1497 (2037)
..|.-+
T Consensus 432 ~~a~~a 437 (765)
T PRK10049 432 EQAWTA 437 (765)
T ss_pred HHHHHH
Confidence 776643
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.14 Score=67.53 Aligned_cols=170 Identities=19% Similarity=0.211 Sum_probs=109.3
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2037)
.|..|=+...+.|.++| ++|.+++.=...+.+ ..+...-|..+|.|++..||.-++++|....+++..
T Consensus 43 lf~~L~~~~~e~v~~~~-~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-------- 110 (503)
T PF10508_consen 43 LFDCLNTSNREQVELIC-DILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-------- 110 (503)
T ss_pred HHHHHhhcChHHHHHHH-HHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH--------
Confidence 66667777777776655 999999997775543 233445677788999999999999999887633321
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHH-HHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 000149 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFL-LILLVEQLDNPHVTVRMNASRLIRKSCF 310 (2037)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~-l~~Li~~L~~~n~~~~~~a~~~i~~la~ 310 (2037)
....-....++..+-..+ .-.|..|.+..+..+..|.+-...-.++|..- +-.|..-++++|.++|.-+|..+..+|+
T Consensus 111 ~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 111 AAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS 189 (503)
T ss_pred HHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 011112233555565545 34566699999999999855222111222112 3346666677799999999999999987
Q ss_pred hhhccCcccccchhhhhhhhhhHHHHHhhcC
Q 000149 311 FHLKGGCELLVSKAVLICNELFDYLSVRLAS 341 (2037)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~ 341 (2037)
+....- ... .-..+++.+++.+-+
T Consensus 190 ~S~~~~-----~~~--~~sgll~~ll~eL~~ 213 (503)
T PF10508_consen 190 HSPEAA-----EAV--VNSGLLDLLLKELDS 213 (503)
T ss_pred cCHHHH-----HHH--HhccHHHHHHHHhcC
Confidence 763321 111 011366777777766
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.89 E-value=1.2 Score=57.25 Aligned_cols=414 Identities=17% Similarity=0.211 Sum_probs=219.0
Q ss_pred CCCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHH-HHHH-HHHhccCC
Q 000149 1039 SAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDG-LSGL-ARLHKSLS 1116 (2037)
Q Consensus 1039 ~~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg-~~Gi-~~~r~~~~ 1116 (2037)
.+.+...||.+-++-|.|..|.-|.-.-.++... ..+.+-.|-.||.+..+.|. ..|. ++.|..+.
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t------------~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q 114 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPT------------NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ 114 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCC------------cccceeeehhhhhcccchhhhhhhhhhhhhccch
Confidence 4556778999999999999999988776554321 11234467789999988884 4444 34555443
Q ss_pred hhH----HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhh-----------
Q 000149 1117 LQD----ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY----------- 1181 (2037)
Q Consensus 1117 l~~----qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~----------- 1181 (2037)
..+ -.-.+..-|+.++|+..|+.+++..|+.++.++|+--||..-|......+.....++-.|..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 322 22345677999999999999999999999999999999887777554333222222222210
Q ss_pred --------hhhHhHHHHHH------HHh-cC--------ChhhHHHHhhcccccCccccCCCCC-cchHHHHHHHHHHHH
Q 000149 1182 --------KKTWCMQGVQA------AWR-LG--------RWDLMDEYLSGADEEGLLCSSSESN-ASFDMDVAKILQAMM 1237 (2037)
Q Consensus 1182 --------~~~l~~~~~EA------AWr-lg--------~Wd~lee~l~~~~~~gl~~~~~~~~-~~f~~~l~kaLlal~ 1237 (2037)
.+.-+.-++|+ ||. +| -|..+..|-.... .++. ..-..++|..+..++
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--------ldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--------LDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--------CCCcchHHHhhHHHHHHHHh
Confidence 00001111111 221 11 1333333322111 0111 112234454444443
Q ss_pred cCCcchHHHHHH-HHHHHHhhhhhhhchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHH
Q 000149 1238 KKDHFSVSDKIG-VSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWEN 1316 (2037)
Q Consensus 1238 ~~d~~~f~~~I~-~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~ 1316 (2037)
.-| +.+. -.|.....+..+..-....-.| .=|.+ |+..+..-.. .. .-++.+..-.+++..
T Consensus 267 ~~d-----~Avs~Y~rAl~lrpn~A~a~gNla~iY----yeqG~--ldlAI~~Ykr------al-~~~P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 267 IFD-----RAVSCYLRALNLRPNHAVAHGNLACIY----YEQGL--LDLAIDTYKR------AL-ELQPNFPDAYNNLAN 328 (966)
T ss_pred cch-----HHHHHHHHHHhcCCcchhhccceEEEE----ecccc--HHHHHHHHHH------HH-hcCCCchHHHhHHHH
Confidence 211 1111 0111111222111110000000 00111 1111211110 00 000111122222222
Q ss_pred HhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHc
Q 000149 1317 RLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWST 1394 (2037)
Q Consensus 1317 RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~ 1394 (2037)
-|.-.++-... +... -. .+ .+....++..-..+.+-|..|.++.|.+--+.|....+. .+.=--|-++-++
T Consensus 329 ALkd~G~V~ea-~~cY--nk-aL---~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 329 ALKDKGSVTEA-VDCY--NK-AL---RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHhccchHHH-HHHH--HH-HH---HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc
Confidence 22222211110 0000 00 00 011223445567888899999999998887777655322 2333346677788
Q ss_pred CCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHH
Q 000149 1395 RRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVIT 1474 (2037)
Q Consensus 1395 g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~ 1474 (2037)
|.-.+||..-+.+|.-- +..|.++--+|.-+-+.|. .+++++
T Consensus 402 gnl~~Ai~~YkealrI~------------------------------------P~fAda~~NmGnt~ke~g~--v~~A~q 443 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIK------------------------------------PTFADALSNMGNTYKEMGD--VSAAIQ 443 (966)
T ss_pred ccHHHHHHHHHHHHhcC------------------------------------chHHHHHHhcchHHHHhhh--HHHHHH
Confidence 99899998888876421 1336666666766666554 778899
Q ss_pred HHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc--hhhhHHH---
Q 000149 1475 LYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN--LFQALPR--- 1549 (2037)
Q Consensus 1475 ~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~--~~q~lpR--- 1549 (2037)
-|.+|++.+|+...+|-.||--|. | .| .+..||..|-.+|...+.+ .++.+..
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~k----D----------sG--------ni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYK----D----------SG--------NIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhh----c----------cC--------CcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 999999999999999998876542 1 11 3457999999999998875 4444433
Q ss_pred HHHHhhhc
Q 000149 1550 LLTLWFDF 1557 (2037)
Q Consensus 1550 lLtLWl~~ 1557 (2037)
++.=|.|+
T Consensus 502 ~vcdw~D~ 509 (966)
T KOG4626|consen 502 IVCDWTDY 509 (966)
T ss_pred HHhcccch
Confidence 33346554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=96.74 E-value=1.6 Score=56.10 Aligned_cols=291 Identities=12% Similarity=0.019 Sum_probs=146.2
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC--h--hH-
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS--L--QD- 1119 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~--l--~~- 1119 (2037)
+..++.-|.|.+|...++....... +| .-.+-...+++.+.++++........ ...++ + .-
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~---~~---------~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~ 158 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAA---EP---------VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIA 158 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCC---CC---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHH
Confidence 4555666666666666655322110 00 11222445566666666665555432 11111 1 11
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHH---H--
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAA---W-- 1194 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAA---W-- 1194 (2037)
+...+-..|++++|+..++..++..|++.....-+...+.+.|+|+.+....+.+.........+.......+. -
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 23345578999999999999999999888766666777888899998777776665431111111111111110 1
Q ss_pred --hcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhH
Q 000149 1195 --RLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYP 1272 (2037)
Q Consensus 1195 --rlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~ 1272 (2037)
.-...+.+.++....+.. ...+......++. ..+..++.+...+.++.+-.. .. ++....|+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~------~~~~~~l~~~~a~--~l~~~g~~~~A~~~l~~~l~~---~p-----d~~~~~~~ 302 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRH------RRHNIALKIALAE--HLIDCDDHDSAQEIIFDGLKK---LG-----DDRAISLP 302 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHH------HhCCHHHHHHHHH--HHHHCCChHHHHHHHHHHHhh---CC-----CcccchhH
Confidence 112233444433322210 0012233333333 334455555444444322211 11 11111111
Q ss_pred HHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHH
Q 000149 1273 FIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCW 1352 (2037)
Q Consensus 1273 ~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~W 1352 (2037)
.+..... +. + .+.....+..+.|-. ....+.+ +...
T Consensus 303 ~l~~~~~---------l~--------~--~~~~~~~~~~e~~lk------------------------~~p~~~~-~~ll 338 (409)
T TIGR00540 303 LCLPIPR---------LK--------P--EDNEKLEKLIEKQAK------------------------NVDDKPK-CCIN 338 (409)
T ss_pred HHHHhhh---------cC--------C--CChHHHHHHHHHHHH------------------------hCCCChh-HHHH
Confidence 1111110 00 0 011111112222221 1111111 2456
Q ss_pred HHHHHHHHHcCChHHHHHHHHH--Hhhc-CCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1353 LQYAKLCRLAGHYETATRAILE--AQAS-GAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1353 L~~AklARKag~~~~A~~aLl~--a~~~-~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
...++++-+.|.++.|...+.+ +.+. +++......|.++|+.|++.+|.+..++++.
T Consensus 339 ~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 339 RALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7889999999999999999995 4333 3445566899999999999999999998865
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.68 E-value=2.4 Score=56.16 Aligned_cols=447 Identities=16% Similarity=0.200 Sum_probs=218.9
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhh------------hhhHHHHHHHHHhhcccHHHHHHHHHHHh
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLK------------TRSEWIKCIEFLLLNKRKAIRDAFCTQIG 215 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~------------~~~~w~~~~~~~~~~~~r~vR~a~~~~~~ 215 (2037)
+--++...+..+.++ +.+-++..|.+=|.|..+.+..- ........|..++.|++..||.+|+.++.
T Consensus 61 l~yl~l~~~~~~~~~-~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~ 139 (526)
T PF01602_consen 61 LGYLYLSLYLHEDPE-LLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALL 139 (526)
T ss_dssp HHHHHHHHHTTTSHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchh-HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 444455555555544 33335555555555544221110 22334457778889999999999999999
Q ss_pred HhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc--hhHHHHHHHHHHHhCCC
Q 000149 216 YFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS--QHFLFLLILLVEQLDNP 293 (2037)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~--e~~~~~l~~Li~~L~~~ 293 (2037)
.+.+. . ++--... +++.+.+.+ .-+|+.+.-..+..+.+| + ..-+. .++...+-.|..-++.+
T Consensus 140 ~i~~~---------~--p~~~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~-~~~~~~~~~~~~~~~~L~~~l~~~ 204 (526)
T PF01602_consen 140 KIYRK---------D--PDLVEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-K-CNDDSYKSLIPKLIRILCQLLSDP 204 (526)
T ss_dssp HHHHH---------C--HCCHHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-H-CTHHHHTTHHHHHHHHHHHHHTCC
T ss_pred HHhcc---------C--HHHHHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-c-cCcchhhhhHHHHHHHhhhccccc
Confidence 97621 1 1122223 788999977 445588999998888887 1 11111 33333333344555899
Q ss_pred CcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHH-HHHHHHHHhCCChHHHHHhhcccccch
Q 000149 294 HVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIM-VREFAEAAFGVETEELVKKMIPAVLPK 372 (2037)
Q Consensus 294 n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~-~~~~~e~ll~~~~~~fL~~~~~~~LP~ 372 (2037)
++.+...+.+-+..++......+. . ..+.+.+...+.+.... +-+.+..++.+....-
T Consensus 205 ~~~~q~~il~~l~~~~~~~~~~~~------~----~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----------- 263 (526)
T PF01602_consen 205 DPWLQIKILRLLRRYAPMEPEDAD------K----NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----------- 263 (526)
T ss_dssp SHHHHHHHHHHHTTSTSSSHHHHH------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----------
T ss_pred chHHHHHHHHHHHhcccCChhhhh------H----HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----------
Confidence 999888888777766433322110 0 12223333222221111 1121111111111000
Q ss_pred hhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHH
Q 000149 373 LVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQTGSDNQEIFAAALPALLDEL 452 (2037)
Q Consensus 373 LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~el 452 (2037)
+...+...|..++...+++--.-+|..+..........++. +.+....
T Consensus 264 -----------------------------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~---~~~~~~~ 311 (526)
T PF01602_consen 264 -----------------------------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFN---QSLILFF 311 (526)
T ss_dssp -----------------------------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGT---HHHHHHH
T ss_pred -----------------------------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhh---hhhhhhe
Confidence 11222223333333333332222333333332223222221 1111111
Q ss_pred HHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcc
Q 000149 453 ICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGS 532 (2037)
Q Consensus 453 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~ 532 (2037)
...+ .|...++. .-+.+..++. +.. +--|+..+..-+.+..+...|+.++.+|+.+.....+
T Consensus 312 --l~~~--~d~~Ir~~--~l~lL~~l~~----~~n--------~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 312 --LLYD--DDPSIRKK--ALDLLYKLAN----ESN--------VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp --HHCS--SSHHHHHH--HHHHHHHH------HHH--------HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred --ecCC--CChhHHHH--HHHHHhhccc----ccc--------hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 1112 22222211 1111211111 111 1112222222222233556788899999998887744
Q ss_pred ccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHH
Q 000149 533 HLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILED 612 (2037)
Q Consensus 533 ~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~ 612 (2037)
....+..-++..|..+ + ....-.+|..+...+... |+.- ..++..++.+++... . ..+....=+
T Consensus 374 ~~~~~v~~l~~ll~~~----~-~~~~~~~~~~i~~ll~~~-~~~~----~~~l~~L~~~l~~~~-~-----~~~~~~~~w 437 (526)
T PF01602_consen 374 DAEWYVDTLLKLLEIS----G-DYVSNEIINVIRDLLSNN-PELR----EKILKKLIELLEDIS-S-----PEALAAAIW 437 (526)
T ss_dssp SHHHHHHHHHHHHHCT----G-GGCHCHHHHHHHHHHHHS-TTTH----HHHHHHHHHHHTSSS-S-----HHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhc----c-ccccchHHHHHHHHhhcC-hhhh----HHHHHHHHHHHHHhh-H-----HHHHHHHHh
Confidence 4444444444444432 1 234557788877776542 2222 223334444443221 1 234555556
Q ss_pred HHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHH
Q 000149 613 LVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTA 692 (2037)
Q Consensus 613 Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~ 692 (2037)
++-|..+...+ .. ...+.++.+.++...|+..|+.+.++.+-++.....+
T Consensus 438 ilGEy~~~~~~-------------------------~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~---- 487 (526)
T PF01602_consen 438 ILGEYGELIEN-------------------------TE-SAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPE---- 487 (526)
T ss_dssp HHHHHCHHHTT-------------------------TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS----
T ss_pred hhcccCCcccc-------------------------cc-cHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCc----
Confidence 66665554432 11 3456677788888888999999999999988754431
Q ss_pred HHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000149 693 LINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2037)
Q Consensus 693 ~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2037)
. .....++..++..+...+ .+.+++..|-++++++
T Consensus 488 -------~--~~~~~i~~~~~~~~~~~s---~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 488 -------N--EVQNEILQFLLSLATEDS---SDPEVRDRAREYLRLL 522 (526)
T ss_dssp -------T--THHHHHHHHHHCHHHHS----SSHHHHHHHHHHHHHH
T ss_pred -------h--hhHHHHHHHHHHHhccCC---CCHHHHHHHHHHHHHH
Confidence 0 123355566666565322 2368999999998876
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.57 E-value=4.5 Score=52.88 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=70.2
Q ss_pred HHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh-
Q 000149 193 KCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMA- 271 (2037)
Q Consensus 193 ~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~- 271 (2037)
+||..+ .|+++.+|-.-|-.|.-++ +-++..++ -..|..++..+. ..|....|-.+-++..||.-
T Consensus 94 ~~l~~l-gd~~~lIr~tvGivITTI~---------s~~~~~~w---pelLp~L~~~L~-s~d~n~~EgA~~AL~KIcEDs 159 (885)
T KOG2023|consen 94 ECLHGL-GDASPLIRATVGIVITTIA---------STGGLQHW---PELLPQLCELLD-SPDYNTCEGAFGALQKICEDS 159 (885)
T ss_pred HHHhhc-cCchHHHHhhhhheeeeee---------cccccccc---hhHHHHHHHHhc-CCcccccchhHHHHHHHHhhh
Confidence 487767 9999999988877666644 33322333 556777887444 45555788888887777632
Q ss_pred -h----cccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 272 -V----DVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 272 -~----~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
. +...+-+++.+=+++++..|++|.+|+-|..=+...
T Consensus 160 a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 160 AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 2 122244566677899999999999999998766554
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.006 Score=67.85 Aligned_cols=92 Identities=24% Similarity=0.273 Sum_probs=61.7
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccc-------c----c------ccc--ccChhhHHH
Q 000149 707 TLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQ-------R----F------KIE--CSDDDLIFE 767 (2037)
Q Consensus 707 ~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~-------~----~------~~~--~~~~~F~~~ 767 (2037)
+|+..|++..+.. . +..+++.+.+|||.||||||.++...... + . ... -..++|...
T Consensus 10 ~LL~~L~~iLk~e-~---s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~ 85 (160)
T PF11865_consen 10 ELLDILLNILKTE-Q---SQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPT 85 (160)
T ss_pred HHHHHHHHHHHhC-C---CHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHH
Confidence 5666666655443 2 26899999999999999999999732110 0 0 011 145667666
Q ss_pred HHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHcCC
Q 000149 768 LIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGC 802 (2037)
Q Consensus 768 ll~~~Lv~af~s~~dt~~Q~~~AyaiQelL~~~g~ 802 (2037)
..-+.|.+.+.-.+-+..+..+..||-.+++..|+
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~ 120 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL 120 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc
Confidence 66677888888888888777666666666665544
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=2.3 Score=54.58 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG-APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~-~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
...++.+|+...+.|..+.|...+.++...+ ++.+..-++++ ..|+..+|++.+++.++..|.
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~-------------- 326 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGD-------------- 326 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCC--------------
Confidence 5578999999999999999999999987643 34444556655 348889999999988764321
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
-+..++.+|+-....++ .+++.+.|.++.+..|+- ..|..+|+-+++.
T Consensus 327 ----------------------~~~l~l~lgrl~~~~~~--~~~A~~~le~al~~~P~~-~~~~~La~~~~~~ 374 (398)
T PRK10747 327 ----------------------TPLLWSTLGQLLMKHGE--WQEASLAFRAALKQRPDA-YDYAWLADALDRL 374 (398)
T ss_pred ----------------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc
Confidence 13356677776655554 788999999999999975 4466777766433
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=7.5 Score=54.10 Aligned_cols=280 Identities=17% Similarity=0.224 Sum_probs=162.2
Q ss_pred CCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhc---c---ccccchHHHHHHHHHHhcCCCcchhh
Q 000149 485 NEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIG---S---HLTTYVPKILVLLMHAINKESLQCEG 558 (2037)
Q Consensus 485 ~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g---~---~v~~~~pqI~a~L~saL~~~~L~~~~ 558 (2037)
++.++.=+++|+.-+..-|+.+|..+++. .|.-++++++.++...- . +....+|.++-.|+..+...+ ...+
T Consensus 146 ~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d-~~~a 223 (1075)
T KOG2171|consen 146 PETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGD-DDAA 223 (1075)
T ss_pred hhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccc-hHHH
Confidence 34556667889888999999998776555 88999999999999983 2 566778999999999997544 2345
Q ss_pred hHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHh---hcccC-------
Q 000149 559 LSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQ---HIHEF------- 628 (2037)
Q Consensus 559 l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~---~i~~l------- 628 (2037)
.++...|+..+. .+|.-+++++++|+..-+....... -...+|..|.+++-.+..--..+.+. +++.|
T Consensus 224 ~~~l~~l~El~e-~~pk~l~~~l~~ii~~~l~Ia~n~~-l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~ 301 (1075)
T KOG2171|consen 224 KSALEALIELLE-SEPKLLRPHLSQIIQFSLEIAKNKE-LENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAM 301 (1075)
T ss_pred HHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHh
Confidence 666666666654 3677899999999998887774332 23356777877776665442222221 12222
Q ss_pred -CCCCCchhhHHH----------H-----HHHHHh----cCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHH
Q 000149 629 -PLLPSIAALTEV----------N-----KAIQEA----RGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSE 688 (2037)
Q Consensus 629 -p~Lp~ip~L~~v----------~-----~~l~~~----r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~ 688 (2037)
+.+.+-++..+- . ..+... .|..=+---++.+-..+++++..-|.-||-.|..
T Consensus 302 mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~------- 374 (1075)
T KOG2171|consen 302 MTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSV------- 374 (1075)
T ss_pred cCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------
Confidence 111111111000 0 000000 0000011123333444444444444444444333
Q ss_pred HHHHHHhccCCCC--chhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccccccccccChhhHH
Q 000149 689 DVTALINGEACSD--LDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIF 766 (2037)
Q Consensus 689 ~l~~~~~~e~~~~--~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~~~~~~~~~~F~~ 766 (2037)
.+|+..+ .+.+.+++.-.+.+..+ .+++++.+|--|+|.+-. - +.-+-..+..
T Consensus 375 ------i~EGc~~~m~~~l~~Il~~Vl~~l~D-----phprVr~AA~naigQ~st----d----------l~p~iqk~~~ 429 (1075)
T KOG2171|consen 375 ------IAEGCSDVMIGNLPKILPIVLNGLND-----PHPRVRYAALNAIGQMST----D----------LQPEIQKKHH 429 (1075)
T ss_pred ------HHcccHHHHHHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHHHhhhh----h----------hcHHHHHHHH
Confidence 3444432 11234444444444443 347999999999997521 0 1111111223
Q ss_pred HHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHc
Q 000149 767 ELIDKHLARAFRAAPDTIIQDSAALAIQELLKIA 800 (2037)
Q Consensus 767 ~ll~~~Lv~af~s~~dt~~Q~~~AyaiQelL~~~ 800 (2037)
..+-..|+...-++.+++.|-.+|-|+=+++..|
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC
Confidence 3333446667777899999999999999998875
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=4.3 Score=60.49 Aligned_cols=464 Identities=15% Similarity=0.118 Sum_probs=239.4
Q ss_pred ccchhHHHHHHHHHHHccCCchh-hhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hh-hhhhhccccccccchh
Q 000149 161 SEEVQLSCVRVIRRILVHGTRDV-LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DT-VLSSLFLDENASSRSN 237 (2037)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~-~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~ 237 (2037)
..++|...+.+|.-++.|+.... .+.. ..-+.+|-.+|.+++..+|..+++.++.+.. +. .-..+..
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~-~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie--------- 486 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGG-REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA--------- 486 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---------
Confidence 46899999999999998866331 1111 1123455556689999999999999987540 00 0000111
Q ss_pred hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccch-hHH--HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhc
Q 000149 238 ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQ-HFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2037)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e-~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~ 314 (2037)
...+-.+-+.+. ..|+.++|-..-+++-|.. ...+.. .+. -++-.|++.|.+.++-++..|..-|.++++.-..
T Consensus 487 -aGaIP~LV~LL~-s~~~~iqeeAawAL~NLa~-~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~ 563 (2102)
T PLN03200 487 -AGGIPPLVQLLE-TGSQKAKEDSATVLWNLCC-HSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA 563 (2102)
T ss_pred -CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhC-CcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch
Confidence 122344455444 4567799998888888843 111111 111 2355689999999999999998888888554221
Q ss_pred cCcccccchhhhhhhhhhHHHHHhhc-CchHHHHHHHH---HHhCCCh-HHHHHhh--cccccchhhhccccChh-----
Q 000149 315 GGCELLVSKAVLICNELFDYLSVRLA-SRPIMVREFAE---AAFGVET-EELVKKM--IPAVLPKLVVSQQDNDQ----- 382 (2037)
Q Consensus 315 ~~~~l~~~~~~~~~~~l~~~~~~~l~-~~p~~~~~~~e---~ll~~~~-~~fL~~~--~~~~LP~LVl~~~~~~~----- 382 (2037)
. .+ .+++.-|. ..|.+.....+ .++.+.. +++.... ..-.+|.|+---+....
T Consensus 564 ~--------------~I-~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~ 628 (2102)
T PLN03200 564 A--------------TI-SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEK 628 (2102)
T ss_pred h--------------HH-HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHH
Confidence 1 11 11221121 22222222111 0122222 2222221 23567777764322211
Q ss_pred HHHHHHHHHHHcCCCchhHHh-hhHHHHHHHHhcccc--HHHHHHHHHHHHhhcCCC-hHHHHH-hhhHHHHHHHHHhhc
Q 000149 383 AVNIINELAKCLNTDMVPLIV-TWIPKVLAFALHQAD--ERRLLSALEFYCIQTGSD-NQEIFA-AALPALLDELICFVD 457 (2037)
Q Consensus 383 ~~~~i~~ia~~~~~~~~~l~~-~~~~~Ila~ll~~~~--~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~l~ell~~~~ 457 (2037)
+..+|..|+...+.-...++. +-++.++.+|-.... ..+.+.+|..+......+ ...++. .++|.++ +|+ .
T Consensus 629 Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~-~LL---~ 704 (2102)
T PLN03200 629 AASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLI-KLA---K 704 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHH-HHH---h
Confidence 335555665533333444443 345555554444333 345667776666422211 123344 3556655 454 3
Q ss_pred CCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHh-------
Q 000149 458 GGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMI------- 530 (2037)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~------- 530 (2037)
..|.+. +..+...++.....++.-..+.+...+..+..+ +.+....-|+.|-.+|..|.+-.
T Consensus 705 ~~d~~v-------~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~l----Lr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~ 773 (2102)
T PLN03200 705 SSSIEV-------AEQAVCALANLLSDPEVAAEALAEDIILPLTRV----LREGTLEGKRNAARALAQLLKHFPVDDVLK 773 (2102)
T ss_pred CCChHH-------HHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHH----HHhCChHHHHHHHHHHHHHHhCCChhHHHH
Confidence 333332 234555666666777777777776665555544 34444556777777766654311
Q ss_pred cc-ccccchHHHHHHHHHHhcCCCcchh----hhHH-----------------HHHHHHHhccCCCcchhhHHHHHHHHh
Q 000149 531 GS-HLTTYVPKILVLLMHAINKESLQCE----GLSV-----------------LHFFIEQLSRVSPSSTKHVISQVFAAL 588 (2037)
Q Consensus 531 g~-~v~~~~pqI~a~L~saL~~~~L~~~----~l~~-----------------W~~fv~~L~~~~~~~l~~ll~~i~~~l 588 (2037)
+. +-.....-++.+|.+. ++... ++.+ |..|+.. |+.++|++.-
T Consensus 774 ~~~~~~g~v~~l~~~L~~~----~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~-----p~~l~~l~~~----- 839 (2102)
T PLN03200 774 DSVQCRGTVLALVDLLNST----DLDSSATSEALEALALLARTKGGANFSHPPWAVLAEV-----PSSLEPLVRC----- 839 (2102)
T ss_pred HHHHHhCcHHHHHHHHhcC----CcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhc-----cCchHHHHHH-----
Confidence 11 1122333333333322 22222 2233 4444432 3455544332
Q ss_pred hhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHH-hhccCC
Q 000149 589 IPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV-DGLNHE 667 (2037)
Q Consensus 589 ip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~-~rl~~e 667 (2037)
+. +.....+++|.+||..|-.+....|++.+..-+- .| ..++ |.+++.
T Consensus 840 ---l~---~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~--~~-----------------------~~~~~~~~~~~ 888 (2102)
T PLN03200 840 ---LA---EGHPLVQDKAIEILSRLCRDQPVVLGDLIANASK--CI-----------------------SSLADRIINSS 888 (2102)
T ss_pred ---HH---cCChHHHHHHHHHHHHHhccChhHHHHHHhcccc--hH-----------------------HHHHHHHhhcC
Confidence 21 2223457899999999988888888877644321 11 1222 334566
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhh
Q 000149 668 NLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCA 717 (2037)
Q Consensus 668 n~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~ 717 (2037)
++.|+.-+-.-|----+.|+....+.. .+. .....||.+|++-..
T Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~ 933 (2102)
T PLN03200 889 SLEVKIGGTALLICAAKEHRQLVMEAL-DES----GYLKLLIQALVDMLK 933 (2102)
T ss_pred CceEEecchhhhhhhhhhhHHHHHHHH-Hhh----ccHHHHHHHHHHHHh
Confidence 777777665555555555544322221 111 356678888877654
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=11 Score=52.07 Aligned_cols=144 Identities=17% Similarity=0.092 Sum_probs=88.5
Q ss_pred ChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh
Q 000149 144 DFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL 223 (2037)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~ 223 (2037)
|++.+.+-+.+++-.. .-+++--|+--|-+..+-.++..++ -+-.+..=+.|++..+|-.|=|++.++-.
T Consensus 65 DvS~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~---- 134 (746)
T PTZ00429 65 DVSYLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV---- 134 (746)
T ss_pred CchHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc----
Confidence 4444444444433222 3444444555555554432222211 12344444589999999999998888541
Q ss_pred hhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHH
Q 000149 224 SSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNA 301 (2037)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a 301 (2037)
...-+.++.-+++.+.+ ++|-|.=|...+++.|.. ...|++. -.+-.|.+.|..+|+.|.+.|
T Consensus 135 -----------~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~---~~pelv~~~~~~~~L~~LL~D~dp~Vv~nA 199 (746)
T PTZ00429 135 -----------SSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFH---DDMQLFYQQDFKKDLVELLNDNNPVVASNA 199 (746)
T ss_pred -----------HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHh---hCcccccccchHHHHHHHhcCCCccHHHHH
Confidence 22235566677887765 668899999999999854 2333321 012346677899999999999
Q ss_pred HHHHHHHHhhh
Q 000149 302 SRLIRKSCFFH 312 (2037)
Q Consensus 302 ~~~i~~la~~~ 312 (2037)
..-+..++...
T Consensus 200 l~aL~eI~~~~ 210 (746)
T PTZ00429 200 AAIVCEVNDYG 210 (746)
T ss_pred HHHHHHHHHhC
Confidence 99888886543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=95.80 E-value=4.2 Score=52.30 Aligned_cols=290 Identities=8% Similarity=-0.033 Sum_probs=152.6
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
...+.+..-..|+|+.|.....++....|+.....+-.-+...+.|+++....+.+......|+.........++.....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 34556667788999999999888888777766555444556677788887776666554444543222222346667777
Q ss_pred CChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHH
Q 000149 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVK 1276 (2037)
Q Consensus 1197 g~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~k 1276 (2037)
|+|+.-.+.+......+ +.+.....-+ +...+..+|.++..+.+...++.- ......+. .
T Consensus 167 ~~~~~Al~~l~~l~~~~------P~~~~~l~ll--~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~-------~ 226 (409)
T TIGR00540 167 NELHAARHGVDKLLEMA------PRHKEVLKLA--EEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFA-------D 226 (409)
T ss_pred CCHHHHHHHHHHHHHhC------CCCHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHH-------H
Confidence 88875555444332210 0111111112 233345566655555544433321 00001110 0
Q ss_pred hhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHH
Q 000149 1277 LHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYA 1356 (2037)
Q Consensus 1277 Lh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~A 1356 (2037)
++.......+.+.. .......+.+.|.. ++-- .......++..|
T Consensus 227 l~~~a~~~~l~~~~------------~~~~~~~L~~~~~~-~p~~-----------------------~~~~~~l~~~~a 270 (409)
T TIGR00540 227 LEQKAEIGLLDEAM------------ADEGIDGLLNWWKN-QPRH-----------------------RRHNIALKIALA 270 (409)
T ss_pred HHHHHHHHHHHHHH------------HhcCHHHHHHHHHH-CCHH-----------------------HhCCHHHHHHHH
Confidence 01000000000000 00112233334432 1100 001245789999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCChH-----HHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCC
Q 000149 1357 KLCRLAGHYETATRAILEAQASGAPNV-----HMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVP 1431 (2037)
Q Consensus 1357 klARKag~~~~A~~aLl~a~~~~~p~~-----~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~ 1431 (2037)
+...+.|.++.|...+.++.+..+++. .+..+-. -..++...+++.++..++..|
T Consensus 271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~-l~~~~~~~~~~~~e~~lk~~p------------------- 330 (409)
T TIGR00540 271 EHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPR-LKPEDNEKLEKLIEKQAKNVD------------------- 330 (409)
T ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhh-cCCCChHHHHHHHHHHHHhCC-------------------
Confidence 999999999999999999987544332 2222211 224566778888887765322
Q ss_pred CCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHhccchHHHHHHHHhhhHHH
Q 000149 1432 LNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYS--RVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1432 ~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~--~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
. ++. +.....+|+-....++ .+++.++|+ .+.+.+|+-+- +.++|..+.+.
T Consensus 331 ~--------------~~~-~~ll~sLg~l~~~~~~--~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~ 383 (409)
T TIGR00540 331 D--------------KPK-CCINRALGQLLMKHGE--FIEAADAFKNVAACKEQLDAND-LAMAADAFDQA 383 (409)
T ss_pred C--------------Chh-HHHHHHHHHHHHHccc--HHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHc
Confidence 1 111 1334455544433333 677888888 57788888776 44787776544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=3.2 Score=57.23 Aligned_cols=333 Identities=12% Similarity=0.048 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCcc--------------------------ccCCC-CChhhHHHHH
Q 000149 1041 IPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAA--------------------------EKSGT-FEDEDVSFLM 1093 (2037)
Q Consensus 1041 Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~--------------------------~~~~~-~~~~~~~~L~ 1093 (2037)
+.+..+..+-.++|.+..|+..++.-.+... .|+. .+.|. .....+..|+
T Consensus 190 ~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~---~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGS---DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred eeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 3456677777777888888888776543211 1110 00000 0123467899
Q ss_pred HHHhhCCChHHHHHHHHHhccC---ChhHHHHHHHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHH
Q 000149 1094 EIYSFLDEPDGLSGLARLHKSL---SLQDELLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMV 1168 (2037)
Q Consensus 1094 ~IYa~LdEpDg~~Gi~~~r~~~---~l~~qil~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~Lgq~~~ll 1168 (2037)
+.|...++.|.+..+....... +-+.-+-.|-+.|++++|+..|+...+. .|+.. ....+++++.++|.++...
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF-TFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhccchHHHH
Confidence 9999999999999887643322 2334566788999999999999876543 35444 3457888888889988655
Q ss_pred HHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHH
Q 000149 1169 THVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKI 1248 (2037)
Q Consensus 1169 ~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I 1248 (2037)
.....+...........+..-+.+-.+.|+++...+.+..+... ...+|+. +..++ .++++.+++.+..
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--------d~~t~n~-lI~~y--~~~G~~~~A~~lf 414 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--------NLISWNA-LIAGY--GNHGRGTKAVEMF 414 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--------CeeeHHH-HHHHH--HHcCCHHHHHHHH
Confidence 44433322211111222334566777889999888887765431 1234543 22222 2456665555555
Q ss_pred HHHHHHHhhhhhhhchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhh
Q 000149 1249 GVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAR 1328 (2037)
Q Consensus 1249 ~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~ 1328 (2037)
+++... .+.+. ..+|...-....+.-.+.|-.++.+.+... .+..++......+.+.+-+ - ..+..-
T Consensus 415 ~~M~~~---g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~----~g~~p~~~~y~~li~~l~r-~----G~~~eA 481 (697)
T PLN03081 415 ERMIAE---GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSEN----HRIKPRAMHYACMIELLGR-E----GLLDEA 481 (697)
T ss_pred HHHHHh---CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh----cCCCCCccchHhHHHHHHh-c----CCHHHH
Confidence 544322 22111 112332222222222233322222222110 0000111111112211111 0 001100
Q ss_pred hhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHH
Q 000149 1329 EPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQ 1406 (2037)
Q Consensus 1329 e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~~~~Ai~~L~~ 1406 (2037)
..+ +++. .... ...+|-.....++++|.++.|..+..++...++. ....--+.++-..|+.++|.+.++.
T Consensus 482 ~~~--~~~~-----~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 482 YAM--IRRA-----PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHH--HHHC-----CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 111 1111 1111 2457999999999999999999998888766543 3455567888899999999998887
Q ss_pred Hhh
Q 000149 1407 NLL 1409 (2037)
Q Consensus 1407 ~i~ 1409 (2037)
.-+
T Consensus 554 m~~ 556 (697)
T PLN03081 554 LKR 556 (697)
T ss_pred HHH
Confidence 654
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.35 E-value=12 Score=49.23 Aligned_cols=394 Identities=14% Similarity=0.158 Sum_probs=187.3
Q ss_pred hhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhh
Q 000149 145 FSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLS 224 (2037)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~ 224 (2037)
--++++.|...|-...-..++=+++....-.-.|+-.+ +.++..+-.+-++-+ .-|.+.||.|+..-++..+
T Consensus 53 v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~-d~~~~~~~~~~~~~~-~tps~~~q~~~~~~l~~~~------ 124 (569)
T KOG1242|consen 53 VLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV-DPRPISIIEILLEEL-DTPSKSVQRAVSTCLPPLV------ 124 (569)
T ss_pred HHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc-CcchhHHHHHHHHhc-CCCcHHHHHHHHHHhhhHH------
Confidence 34577777777766666666666665555555666533 222222222444545 8899999999999888864
Q ss_pred hhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 000149 225 SLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRL 304 (2037)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~ 304 (2037)
-..+ ......++..+-+.++.++-..-..---.-.|- .++-.+..+-=.-.+.-|-+..+..++..+.-+--.
T Consensus 125 ~~~~------~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~-v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~ 197 (569)
T KOG1242|consen 125 VLSK------GLSGEYVLELLLELLTSTKIAERAGAAYGLAGL-VNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALL 197 (569)
T ss_pred HHhh------ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHH-HcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHH
Confidence 1111 112233444444444422211111111111111 111111111111234445555565555554421111
Q ss_pred HHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcc--------cccchhhhc
Q 000149 305 IRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIP--------AVLPKLVVS 376 (2037)
Q Consensus 305 i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~--------~~LP~LVl~ 376 (2037)
....+..+.-. ...++.. .+++-+..++-.+-..+++-|.. -+...++..-+ +.|+-+.-.
T Consensus 198 a~~~~~~~Lg~---~~EPyiv----~~lp~il~~~~d~~~~Vr~Aa~~----a~kai~~~~~~~aVK~llpsll~~l~~~ 266 (569)
T KOG1242|consen 198 AFEAAQGNLGP---PFEPYIV----PILPSILTNFGDKINKVREAAVE----AAKAIMRCLSAYAVKLLLPSLLGSLLEA 266 (569)
T ss_pred HHHHHHHhcCC---CCCchHH----hhHHHHHHHhhccchhhhHHHHH----HHHHHHHhcCcchhhHhhhhhHHHHHHH
Confidence 11111122122 2345554 34445555554444444443321 12333333322 223333222
Q ss_pred c-ccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccH---HHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHH
Q 000149 377 Q-QDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADE---RRLLSALEFYCIQTGSDNQEIFAAALPALLDEL 452 (2037)
Q Consensus 377 ~-~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~el 452 (2037)
+ +....+++.+.-+|.+..+-+..++-+=.| .++-.+.-..+ +..-.||.-+... ++..+ +....|.+++-
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP-~lsevl~DT~~evr~a~~~~l~~~~sv--idN~d-I~~~ip~Lld~- 341 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIP-VLSEVLWDTKPEVRKAGIETLLKFGSV--IDNPD-IQKIIPTLLDA- 341 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhH-HHHHHHccCCHHHHHHHHHHHHHHHHh--hccHH-HHHHHHHHHHH-
Confidence 1 111123344444444333333222222222 22222222112 1222233222211 12222 22244455442
Q ss_pred HHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHh-c
Q 000149 453 ICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMI-G 531 (2037)
Q Consensus 453 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~-g 531 (2037)
+ +|+. ......++.+. ....-.|..+-=|.||.-+=..=++..+...||++..-++.|-++. -
T Consensus 342 ---l--~dp~------~~~~e~~~~L~-----~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD 405 (569)
T KOG1242|consen 342 ---L--ADPS------CYTPECLDSLG-----ATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED 405 (569)
T ss_pred ---h--cCcc------cchHHHHHhhc-----ceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC
Confidence 2 2222 12233444332 2233445555556666654322233345677899999999999999 3
Q ss_pred c-ccccchHHHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHH
Q 000149 532 S-HLTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVF 585 (2037)
Q Consensus 532 ~-~v~~~~pqI~a~L~saL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~ 585 (2037)
+ -+..|+|+++=.|+..+. .|+.|..+.++...+++.+.++.-.++.|.+....
T Consensus 406 p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~ 462 (569)
T KOG1242|consen 406 PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETL 462 (569)
T ss_pred HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhh
Confidence 4 799999999999998875 58999999999999999887654345555555443
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.12 E-value=10 Score=50.18 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=47.8
Q ss_pred hhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 250 TAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 250 ~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
.+.+|+.++=..-+.+..+ ...+.|+..++.=.|...|.++|+.+|+.|.+-+-++
T Consensus 51 ~~s~~~~~Krl~yl~l~~~---~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i 106 (526)
T PF01602_consen 51 ISSKDLELKRLGYLYLSLY---LHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNI 106 (526)
T ss_dssp CSSSSHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHH---hhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhh
Confidence 3489999999999999987 3457777767777799999999999999999999998
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=23 Score=50.99 Aligned_cols=327 Identities=11% Similarity=-0.002 Sum_probs=185.3
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhc----cCC--
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK----SLS-- 1116 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~----~~~-- 1116 (2037)
+..|..+..+++.+..|+..++.-.+.. ..| ....+..|+..|+..++.|.+..+..... .++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~G---l~p--------D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAG---LKA--------DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCC--------CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 3467778889999999999988754321 111 23578999999999999999999876432 122
Q ss_pred -hhHHHHHHHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHHHHhhhhhcc----chhhhhhHhHHH
Q 000149 1117 -LQDELLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISR----IPQYKKTWCMQG 1189 (2037)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~----~p~~~~~l~~~~ 1189 (2037)
...-|-.|-+.|++++|...|+...+. .|+. .....+++++.+.|+++......+.+... .|+ ...+..-
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD--~vTynaL 585 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR-VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD--HITVGAL 585 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc--HHHHHHH
Confidence 223455789999999999999987654 3543 34467889999999999877766665431 232 1223345
Q ss_pred HHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHh
Q 000149 1190 VQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTR 1269 (2037)
Q Consensus 1190 ~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r 1269 (2037)
+.+.-+.|+++...+....+...|. .+....|+ .+..++ .+.++.+++.+....+... .+.+. ..+|..
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi----~p~~~tyn-sLI~ay--~k~G~~deAl~lf~eM~~~---Gv~PD-~~Tyns 654 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNI----KGTPEVYT-IAVNSC--SQKGDWDFALSIYDDMKKK---GVKPD-EVFFSA 654 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC----CCChHHHH-HHHHHH--HhcCCHHHHHHHHHHHHHc---CCCCC-HHHHHH
Confidence 6677789999998888877655331 11112232 122222 2345555555444443322 11111 123443
Q ss_pred hhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhH
Q 000149 1270 AYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVG 1349 (2037)
Q Consensus 1270 ~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~ 1349 (2037)
..+...+.-.+.|..++...+.. .....+......+....-. ...+.......+. ++. .+...+ .
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k-----~G~~pd~~tynsLI~ay~k-~G~~eeA~~lf~e---M~~-----~g~~Pd-v 719 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARK-----QGIKLGTVSYSSLMGACSN-AKNWKKALELYED---IKS-----IKLRPT-V 719 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHH---HHH-----cCCCCC-H
Confidence 33443444333333333332211 1111122222223222211 0000000111111 111 112222 3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CChH-H-HHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG-APNV-H-MEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~-~p~~-~-iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
.+|-.......++|+++.|...+.++...+ .|+. . ---...+-+.|+.++|.+.++..++
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 579999999999999999999999877665 3432 1 1223456677899999999988865
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.11 E-value=7 Score=52.06 Aligned_cols=356 Identities=13% Similarity=0.113 Sum_probs=194.3
Q ss_pred hhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHH----HHHHHHHhhhcCChhHHHHHHHHHHHHHhhh--
Q 000149 199 LLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL----LDVIKLAFTAADDPLILETLLESTAELMMAV-- 272 (2037)
Q Consensus 199 ~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~-- 272 (2037)
+.+||..=|+|+..+..+.+ ++.+.-+..++ +--|-.++. -+.-.+++|.=-|+|+|....
T Consensus 373 i~~pdwr~reaavmAFGSIl------------~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 373 IQNPDWRNREAAVMAFGSIL------------EGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred cCCcchhhhhHHHHHHHhhh------------cCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchh
Confidence 48999999999999999987 22222222221 112222222 233457889999999996433
Q ss_pred -cccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcC---chH----
Q 000149 273 -DVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS---RPI---- 344 (2037)
Q Consensus 273 -~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~---~p~---- 344 (2037)
.++.+..-..+..|++-|. .+|-+..++..-+.++|++.-+.+- +.+-+.+.+..|++++..|+. |+.
T Consensus 440 ~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~---s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqs 515 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAV---SNGQTDPATPFYEAIIGSLLKVTDRADGNQS 515 (859)
T ss_pred hcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhcc---CCCCCCccchhHHHHHHHHHhhccccccchh
Confidence 2344555555556777764 5599999999999999988766432 122333445678888887772 222
Q ss_pred -----HHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHH----HHHHHcCC-CchhHHhhhHHHHHHHHh
Q 000149 345 -----MVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIIN----ELAKCLNT-DMVPLIVTWIPKVLAFAL 414 (2037)
Q Consensus 345 -----~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~----~ia~~~~~-~~~~l~~~~~~~Ila~ll 414 (2037)
.=+.+.| +...++++-....+..++=-+. |-+ ++|. ..+..-+. +++.++.+.+..|+.-+=
T Consensus 516 NLR~AAYeALmE-lIk~st~~vy~~v~~~~l~il~---kl~----q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~ 587 (859)
T KOG1241|consen 516 NLRSAAYEALME-LIKNSTDDVYPMVQKLTLVILE---KLD----QTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG 587 (859)
T ss_pred hHHHHHHHHHHH-HHHcCcHHHHHHHHHHHHHHHH---HHH----HHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1233444 5555655544433322221111 111 1222 11111111 256666677777766554
Q ss_pred cc--ccHHHHHHHH-HHHHhhcCC--ChHHH--------------HHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHH
Q 000149 415 HQ--ADERRLLSAL-EFYCIQTGS--DNQEI--------------FAAALPALLDELICFVDGGDSDEINERLNRVPRVI 475 (2037)
Q Consensus 415 ~~--~~~~~~~~~l-~~~~~~~~~--~~~~~--------------~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~ 475 (2037)
.. +..+.++..+ ..+.+ +++ -..+. |....|.+.-=|++ |..+.+|.--.. -+.
T Consensus 588 ~~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~--gL~n~~e~qVc~----~aV 660 (859)
T KOG1241|consen 588 SDIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLM--GLSNFQEYQVCA----AAV 660 (859)
T ss_pred ccchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--HhhcchHHHHHH----HHH
Confidence 41 1233343332 22222 111 11222 22222333322222 222222211000 011
Q ss_pred HHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCC-ChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHh--cC-
Q 000149 476 RKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAE-DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAI--NK- 551 (2037)
Q Consensus 476 ~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~-~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL--~~- 551 (2037)
--++.+ ...+.+=+.++-=++|+.+-.++.++. .-..|=..|-.+|++---+|.+--+++--||.+||.|= +-
T Consensus 661 glVgdl---~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d 737 (859)
T KOG1241|consen 661 GLVGDL---ARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTD 737 (859)
T ss_pred HHHHHH---HHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCC
Confidence 111110 123445556667777887766665432 12244567888999888889999999999999999775 21
Q ss_pred ----------CCcchhhhHHHHHHHHHhcc-CCCcchhhHHHHHHHHhh
Q 000149 552 ----------ESLQCEGLSVLHFFIEQLSR-VSPSSTKHVISQVFAALI 589 (2037)
Q Consensus 552 ----------~~L~~~~l~~W~~fv~~L~~-~~~~~l~~ll~~i~~~li 589 (2037)
++||+.++.+..-.++-|.. .++..+.|++..||..+=
T Consensus 738 ~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~ 786 (859)
T KOG1241|consen 738 PADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFID 786 (859)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHH
Confidence 34899999999998888862 123556688887776553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=29 Score=48.66 Aligned_cols=124 Identities=12% Similarity=0.122 Sum_probs=96.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccC-C---hhHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSL-S---LQDE 1120 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~-~---l~~q 1120 (2037)
.-+....+-|.|..|+-.+++..+..+.+ ...+..|..+|..++..+.+.-.+..-..+ + ....
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~------------~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQ------------SGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccc------------hhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 45667889999999999999987653211 112338889999999999988887643221 1 1112
Q ss_pred --HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1121 --LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1121 --il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
+..+...|+|++|.+.|+++++.+|++.+...|+...+.+.++.+..+..++.+....|.
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 336788899999999999999999999988889988889999999999988887766665
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.08 Score=49.48 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=49.3
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
+.|+|++|...|+.+++..|++.+...++-+|+.+.|+++......+.+....|+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 6799999999999999999999999999999999999999988888877766665
|
... |
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.51 E-value=24 Score=46.91 Aligned_cols=335 Identities=14% Similarity=0.196 Sum_probs=176.9
Q ss_pred cccCCChhhHHHHHHHhhcc-cCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000149 139 LNFHSDFSFLLNIYFEFLYD-ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2037)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~-~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2037)
|-....++.+-+ |.|.++. ..|-+-+=-+++....|.....+.++--- ...++||+.+|.|..+.||.-.+-++++.
T Consensus 503 vasalgip~llp-fLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl-~~lv~ii~~gl~De~qkVR~itAlalsal 580 (1172)
T KOG0213|consen 503 VASALGIPALLP-FLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHL-KPLVKIIEHGLKDEQQKVRTITALALSAL 580 (1172)
T ss_pred HHHHhCcHHHHH-HHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhh-HHHHHHHHHhhcccchhhhhHHHHHHHHH
Confidence 445667788888 8888888 44777777788888777777666654332 45789999999999999999998888875
Q ss_pred hhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcch
Q 000149 218 LQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTV 297 (2037)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~ 297 (2037)
.++.. .-+.. -||- |..-| |..| +.. +|.. +-+|..-+.||-+-.-..
T Consensus 581 aeaa~----------Pygie---~fDs------------VlkpL---wkgi--r~h-rgk~-laafLkAigyliplmd~e 628 (1172)
T KOG0213|consen 581 AEAAT----------PYGIE---QFDS------------VLKPL---WKGI--RQH-RGKE-LAAFLKAIGYLIPLMDAE 628 (1172)
T ss_pred HHhcC----------CcchH---HHHH------------HHHHH---HHHH--HHc-cChH-HHHHHHHHhhccccccHH
Confidence 42211 11111 1111 11111 2232 221 2222 246777777777665555
Q ss_pred HHHHHH-HHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhc
Q 000149 298 RMNASR-LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVS 376 (2037)
Q Consensus 298 ~~~a~~-~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~ 376 (2037)
.+.-|+ |+.-+-..-+ -++.. ++=..+.| .+++.| +.-|++. ++++.- +||.....
T Consensus 629 ya~yyTrevmlil~rEf-------~sPDe----emkkivLK-------Vv~qcc-~t~Gv~~-~y~r~d---ilp~ff~~ 685 (1172)
T KOG0213|consen 629 YASYYTREVMLILIREF-------GSPDE----EMKKIVLK-------VVKQCC-ATDGVEP-AYIRFD---ILPEFFFS 685 (1172)
T ss_pred HHHHhHHHHHHHHHHhh-------CCChH----HHHHHHHH-------HHHHHh-cccCCCH-HHHhhh---hhHHHHhh
Confidence 555554 3333311111 13332 22233332 244544 4555443 344443 45555433
Q ss_pred ---------cccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHHhhcCCChHHHHHhhhHH
Q 000149 377 ---------QQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQTGSDNQEIFAAALPA 447 (2037)
Q Consensus 377 ---------~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 447 (2037)
++...+.+.+-.+||...+.+ +.+...+.-+..+ .+=++.....
T Consensus 686 fw~rrmA~drr~ykqlv~ttv~ia~KvG~~----------------------~~v~R~v~~lkde-----~e~yrkm~~e 738 (1172)
T KOG0213|consen 686 FWGRRMALDRRNYKQLVDTTVEIAAKVGSD----------------------PIVSRVVLDLKDE-----PEQYRKMVAE 738 (1172)
T ss_pred hhhhhhhccccchhhHHHHHHHHHHHhCch----------------------HHHHHHhhhhccc-----cHHHHHHHHH
Confidence 333333344555555544421 1111111111111 0001111111
Q ss_pred HHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhH-HHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHH
Q 000149 448 LLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLR-NHFVGLLNSIDRKMLHAEDLSLQKQALKRIEIL 526 (2037)
Q Consensus 448 ~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~-~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~l 526 (2037)
++...+-.+|..|-|+ =|+ ..+=||+.-|...-.. . .-.+..+|..
T Consensus 739 tv~ri~~~lg~~dide---------------------------rleE~lidgil~Afqeqtt~-----d-~vml~gfg~V 785 (1172)
T KOG0213|consen 739 TVSRIVGRLGAADIDE---------------------------RLEERLIDGILYAFQEQTTE-----D-SVMLLGFGTV 785 (1172)
T ss_pred HHHHHHhccccccccH---------------------------HHHHHHHHHHHHHHHhcccc-----h-hhhhhhHHHH
Confidence 2222223445554443 222 2344777777543211 1 2457889999
Q ss_pred HHHhccccccchHHHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcc
Q 000149 527 IEMIGSHLTTYVPKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2037)
Q Consensus 527 i~l~g~~v~~~~pqI~a~L~saL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2037)
..-+|+.+..++||||.+..--|+. +..|..+.+.-..+...|.. |.+ +.++...-++|.-|+.
T Consensus 786 ~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlkt-c~e--e~~m~~lGvvLyEylg 851 (1172)
T KOG0213|consen 786 VNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKT-CGE--EKLMGHLGVVLYEYLG 851 (1172)
T ss_pred HHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHh-ccH--HHHHHHhhHHHHHhcC
Confidence 9999999999999999998888864 45677776665555555542 211 2344445555666664
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.51 E-value=6.6 Score=52.57 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=32.1
Q ss_pred hcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 272 VDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 272 ~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
-|.+-|++.+..=+|---|-|+|-++=|.|.+-+-++
T Consensus 98 LdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i 134 (866)
T KOG1062|consen 98 LDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNI 134 (866)
T ss_pred hccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhcc
Confidence 4667888877777899999999999999999988887
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=28 Score=50.15 Aligned_cols=305 Identities=10% Similarity=0.071 Sum_probs=170.6
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhc----cCC--
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK----SLS-- 1116 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~----~~~-- 1116 (2037)
+..|..+..+||.+..|+..++.-.... ..| ....+..|+..|...++.|.+..+..... .++
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~G---v~P--------dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAG---VEA--------NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCC--------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 4577788889999999999998754321 111 23578999999999999999988876322 122
Q ss_pred -hhHHHHHHHhhcCHHHHHHHHHHHHcc----CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHH
Q 000149 1117 -LQDELLSNKKSGNWAEVFTSCEQALQM----EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQ 1191 (2037)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~----~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~E 1191 (2037)
...-+-.+-+.|++++|...|+..... .|+.. ...-++.++.+.|+++.+....+.+...........+...+.
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 223455788999999999999987642 45543 345788999999999988777776654422112223445567
Q ss_pred HHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhh
Q 000149 1192 AAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAY 1271 (2037)
Q Consensus 1192 AAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y 1271 (2037)
+--+.|+++...+++..+...|. .++......+..++ .+.++.++..+.++.++.. .+. ....+|..-.
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv-----~PD~~TynsLI~a~--~k~G~~eeA~~l~~eM~k~---G~~-pd~~tynsLI 691 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGV-----KPDEVFFSALVDVA--GHAGDLDKAFEILQDARKQ---GIK-LGTVSYSSLM 691 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHc---CCC-CCHHHHHHHH
Confidence 77789999999888877765441 12211111122221 2345555555555544432 111 1112344333
Q ss_pred HHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHH
Q 000149 1272 PFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNC 1351 (2037)
Q Consensus 1272 ~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~ 1351 (2037)
....+.-.+.|-.++.+-+.. ....++... |..=+......=...+-+--++. +. ..+...+ ..+
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~-----~g~~Pdvvt-------yN~LI~gy~k~G~~eeAlelf~e-M~-~~Gi~Pd-~~T 756 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKS-----IKLRPTVST-------MNALITALCEGNQLPKALEVLSE-MK-RLGLCPN-TIT 756 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHH-HH-HcCCCCC-HHH
Confidence 444444443333333322210 011111111 22221111111011111111111 11 0112112 346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-CChHHH
Q 000149 1352 WLQYAKLCRLAGHYETATRAILEAQASG-APNVHM 1385 (2037)
Q Consensus 1352 WL~~AklARKag~~~~A~~aLl~a~~~~-~p~~~i 1385 (2037)
|-...+.+.+.|.++.|...+.++...+ .|+..+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~t 791 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 7777788999999999999999987766 455443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.18 E-value=14 Score=47.37 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=52.1
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT 1184 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~ 1184 (2037)
..--+-.+|.+++|..||..+++..|+......+.--|+..+|.|..+.......+.-.|++.+.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA 185 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA 185 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH
Confidence 33446688999999999999999999977777888999999999998877665555555665543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.44 Score=61.03 Aligned_cols=188 Identities=15% Similarity=0.120 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChH--
Q 000149 1306 KFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNV-- 1383 (2037)
Q Consensus 1306 ~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~-- 1383 (2037)
..+++.+.|++|=+.- .-|..=+..+.. +.+-.+.|+..|-.--..|..+.|..+-.+|.++++..+
T Consensus 118 ~ysn~aN~~kerg~~~--------~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca 186 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQ--------DALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCA 186 (966)
T ss_pred HHHHHHHHHHHhchHH--------HHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhh
Confidence 3456778899884322 122222233322 234567899999999999999999999999998876432
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHH
Q 000149 1384 HMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHY 1463 (2037)
Q Consensus 1384 ~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~ 1463 (2037)
.-.-..|+-++|.-++|...-.+++..-|.- |-+.--+|--..+
T Consensus 187 ~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f------------------------------------AiawsnLg~~f~~ 230 (966)
T KOG4626|consen 187 RSDLGNLLKAEGRLEEAKACYLKAIETQPCF------------------------------------AIAWSNLGCVFNA 230 (966)
T ss_pred hcchhHHHHhhcccchhHHHHHHHHhhCCce------------------------------------eeeehhcchHHhh
Confidence 2234567888899888888777777642210 1122223333333
Q ss_pred hCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHH--HHHhhhhhcccCCcchhh----------hhchHHHHHHH
Q 000149 1464 TGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLV--DARKRQEENSEIGPSEKR----------WWFYVPDVLLF 1531 (2037)
Q Consensus 1464 s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~--~~~~~~~~~~~~~~~~~~----------~~~~l~~ai~~ 1531 (2037)
+|. ....++.|.+|++++|.+-.+|+.||.-|..... .+-...+......+.... -+..+..||.+
T Consensus 231 ~Ge--i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~ 308 (966)
T KOG4626|consen 231 QGE--IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDT 308 (966)
T ss_pred cch--HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHH
Confidence 333 5567899999999999999999999987765531 110000000000000000 01245568899
Q ss_pred HHHHhccCCcc
Q 000149 1532 YAKGLHRGHKN 1542 (2037)
Q Consensus 1532 Yl~sl~~g~~~ 1542 (2037)
|-+++...+.+
T Consensus 309 Ykral~~~P~F 319 (966)
T KOG4626|consen 309 YKRALELQPNF 319 (966)
T ss_pred HHHHHhcCCCc
Confidence 99998888765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=94.11 E-value=3.1 Score=47.21 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=99.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++....+-|.|..|+.+++..+..... ....+..+..+|...+++|........ ...+. ..
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPD------------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4678888899999999999997654211 123456788888888998887776542 11111 11
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccC--CCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQME--PTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~--p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
.....+...|++++|...|+++++.. +........+-.|+...|+++......+......|.... .......+....
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~ 182 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE-SLLELAELYYLR 182 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH-HHHHHHHHHHHc
Confidence 23345678899999999999888643 233344455667788888888777766655544443222 222345667778
Q ss_pred CChhhHHHHhhcc
Q 000149 1197 GRWDLMDEYLSGA 1209 (2037)
Q Consensus 1197 g~Wd~lee~l~~~ 1209 (2037)
|+|+...+++...
T Consensus 183 ~~~~~A~~~~~~~ 195 (234)
T TIGR02521 183 GQYKDARAYLERY 195 (234)
T ss_pred CCHHHHHHHHHHH
Confidence 8888776666543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=42 Score=50.84 Aligned_cols=407 Identities=14% Similarity=0.108 Sum_probs=186.1
Q ss_pred CChhHHHHHHHHHHHHHhhhcccchh-H-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhh
Q 000149 253 DDPLILETLLESTAELMMAVDVHSQH-F-LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNE 330 (2037)
Q Consensus 253 ~d~~i~eTll~~~~~i~~~~~~~~e~-~-~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~ 330 (2037)
.++++++..+.+++-|..+.+.+... . .-++-.|++-|.+++.-++--|..-|.++|.+.....+ .+. +..
T Consensus 458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~-iV~------~aG 530 (2102)
T PLN03200 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRA-CVE------SAG 530 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHH-HHH------HCC
Confidence 56778888888888874322221111 1 12345588888899999999999999999874211100 010 112
Q ss_pred hhHHHHHhhcCchHHHHHHH-HHHhCCChHHHHHhhcccccchhhh--ccccChhHHHHHHHHHHHcC---C-CchhH--
Q 000149 331 LFDYLSVRLASRPIMVREFA-EAAFGVETEELVKKMIPAVLPKLVV--SQQDNDQAVNIINELAKCLN---T-DMVPL-- 401 (2037)
Q Consensus 331 l~~~~~~~l~~~p~~~~~~~-e~ll~~~~~~fL~~~~~~~LP~LVl--~~~~~~~~~~~i~~ia~~~~---~-~~~~l-- 401 (2037)
..+++++-|.+....+++-| .. ...++.....-++|.|+- ...........++.|+..+. . +.+.-
T Consensus 531 AIppLV~LL~sgd~~~q~~Aa~A-----L~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~ 605 (2102)
T PLN03200 531 AVPALLWLLKNGGPKGQEIAAKT-----LTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGS 605 (2102)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHH-----HHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhh
Confidence 33455555554322222221 11 111221111122233221 11111111223333333222 1 11111
Q ss_pred HhhhHHHHHHHHhccccHH---HHHHHHHHHHhhcCCChHHH-HHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHH
Q 000149 402 IVTWIPKVLAFALHQADER---RLLSALEFYCIQTGSDNQEI-FAAALPALLDELICFVDGGDSDEINERLNRVPRVIRK 477 (2037)
Q Consensus 402 ~~~~~~~Ila~ll~~~~~~---~~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~ 477 (2037)
..+.....|..|+...+++ ....+|.-+.+......+.+ ....+|.++ +|+. .++.+.. +. ...++-.
T Consensus 606 ~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV-~LLs---s~~~~v~-ke---AA~AL~n 677 (2102)
T PLN03200 606 AANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCI-KLLT---NNTEAVA-TQ---SARALAA 677 (2102)
T ss_pred hccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH-HHHh---cCChHHH-HH---HHHHHHH
Confidence 1234445556666655543 34444433332111111233 335566666 3433 2333222 11 1233333
Q ss_pred HhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccc----cccchHHHHHHHHHHhcCCC
Q 000149 478 VSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSH----LTTYVPKILVLLMHAINKES 553 (2037)
Q Consensus 478 ~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~----v~~~~pqI~a~L~saL~~~~ 553 (2037)
+.+. ...+....+++...+-.+-. ++..++...+..++.+|+.+.+.-... -..++|.++..|+++ .++
T Consensus 678 L~~~-~~~~q~~~~v~~GaV~pL~~----LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G--~~~ 750 (2102)
T PLN03200 678 LSRS-IKENRKVSYAAEDAIKPLIK----LAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG--TLE 750 (2102)
T ss_pred HHhC-CCHHHHHHHHHcCCHHHHHH----HHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC--ChH
Confidence 3321 11122233343333322222 244556677888999999887754221 235678899999887 455
Q ss_pred cchhhhHHHHHHHHHhccCCCcc-hhhHHH--HHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCC
Q 000149 554 LQCEGLSVLHFFIEQLSRVSPSS-TKHVIS--QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPL 630 (2037)
Q Consensus 554 L~~~~l~~W~~fv~~L~~~~~~~-l~~ll~--~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~ 630 (2037)
-++.|..+-..+++.-. .++ +...+. -++..++.+++.-+- ....--.|.+.|.+|...... ..+..
T Consensus 751 ~k~~Aa~AL~~L~~~~~---~~~~~~~~~~~~g~v~~l~~~L~~~~~-~~~~~~~al~~l~~l~~~~~~---~~~~~--- 820 (2102)
T PLN03200 751 GKRNAARALAQLLKHFP---VDDVLKDSVQCRGTVLALVDLLNSTDL-DSSATSEALEALALLARTKGG---ANFSH--- 820 (2102)
T ss_pred HHHHHHHHHHHHHhCCC---hhHHHHHHHHHhCcHHHHHHHHhcCCc-chhhHHHHHHHHHHHHhhccc---CCCCC---
Confidence 67777666666666532 122 211221 133334444443221 111122466666655442110 11111
Q ss_pred CCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHH
Q 000149 631 LPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLIS 710 (2037)
Q Consensus 631 Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~ 710 (2037)
|.+. ++-+.-+ -|.-+++.+.|+|+.|-.-|..=|.++.+....-+.+++.+. + .-|+.|-.
T Consensus 821 ----~~~~----~~~e~p~------~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~-~---~~~~~~~~ 882 (2102)
T PLN03200 821 ----PPWA----VLAEVPS------SLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIANA-S---KCISSLAD 882 (2102)
T ss_pred ----Cchh----hHHhccC------chHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHhcc-c---chHHHHHH
Confidence 1111 1111111 233445666888998888888888887776655455544432 1 23555554
Q ss_pred HHHH
Q 000149 711 SLLR 714 (2037)
Q Consensus 711 sLL~ 714 (2037)
..+.
T Consensus 883 ~~~~ 886 (2102)
T PLN03200 883 RIIN 886 (2102)
T ss_pred HHhh
Confidence 4443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.39 Score=58.13 Aligned_cols=254 Identities=16% Similarity=0.103 Sum_probs=71.0
Q ss_pred HHHHHHhhCCChHHHHHHHH-H-hccCChhH------HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc
Q 000149 1091 FLMEIYSFLDEPDGLSGLAR-L-HKSLSLQD------ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC 1162 (2037)
Q Consensus 1091 ~L~~IYa~LdEpDg~~Gi~~-~-r~~~~l~~------qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lg 1162 (2037)
.+..+|-..++++....+.. . .+..+.++ ...-.+..|+++.|..+|++.++.++.+......+... ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44666666677666666652 1 11101111 11224788999999999999998887766555555555 5678
Q ss_pred ChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcc
Q 000149 1163 HLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHF 1242 (2037)
Q Consensus 1163 q~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~ 1242 (2037)
+++.....+.....+.+ ...+....++.+.+.|+|+.+.+.+...... ...+.+..+. +..+-...+.|+..
T Consensus 92 ~~~~A~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~--~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG--DPRYLLSALQLYYRLGDYDEAEELLEKLEEL----PAAPDSARFW--LALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHH--HHHHHHHHHCCHHH
T ss_pred ccccccccccccccccc--ccchhhHHHHHHHHHhHHHHHHHHHHHHHhc----cCCCCCHHHH--HHHHHHHHHcCCHH
Confidence 88877776665444333 2233445667788999999999988774421 1111222232 33344445566655
Q ss_pred hHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhcc
Q 000149 1243 SVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQ 1322 (2037)
Q Consensus 1243 ~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~ 1322 (2037)
+..+.++++-. ..+.+. .-... -++.+.+. ....+.+.+++.|.... .
T Consensus 164 ~A~~~~~~al~-------~~P~~~-~~~~~---l~~~li~~------------------~~~~~~~~~l~~~~~~~---~ 211 (280)
T PF13429_consen 164 KALRDYRKALE-------LDPDDP-DARNA---LAWLLIDM------------------GDYDEAREALKRLLKAA---P 211 (280)
T ss_dssp HHHHHHHHHHH-------H-TT-H-HHHHH---HHHHHCTT------------------CHHHHHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHH-------cCCCCH-HHHHH---HHHHHHHC------------------CChHHHHHHHHHHHHHC---c
Confidence 54444433211 111110 00000 01111111 01112334444554432 1
Q ss_pred CChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc--CCChHHHHHHHHHHHcCCchHH
Q 000149 1323 PSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQAS--GAPNVHMEKAKLLWSTRRSDGA 1400 (2037)
Q Consensus 1323 ~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~--~~p~~~iE~AKLLW~~g~~~~A 1400 (2037)
++ ...|..+|...-.-|+.+.|...+.++... ++|.+...+|.+++..|+.++|
T Consensus 212 ~~------------------------~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A 267 (280)
T PF13429_consen 212 DD------------------------PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEA 267 (280)
T ss_dssp TS------------------------CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred CH------------------------HHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccc
Confidence 11 224777888888999999999999998765 4678899999999999999999
Q ss_pred HHHHHHHhh
Q 000149 1401 IAELQQNLL 1409 (2037)
Q Consensus 1401 i~~L~~~i~ 1409 (2037)
....++++.
T Consensus 268 ~~~~~~~~~ 276 (280)
T PF13429_consen 268 LRLRRQALR 276 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 998887754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=93.49 E-value=2.1 Score=48.68 Aligned_cols=151 Identities=12% Similarity=0.071 Sum_probs=108.0
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh-ccC-------
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH-KSL------- 1115 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r-~~~------- 1115 (2037)
..++.....-|.|..|+-+++..+..... ....+..+..+|...+++|........- ...
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 136 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPN------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPAR 136 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchH
Confidence 35778888889999999999987764221 1235667888999999999877775421 111
Q ss_pred ChhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHh
Q 000149 1116 SLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2037)
Q Consensus 1116 ~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWr 1195 (2037)
........+...|++++|..+|+++++..|++......+-.++...|+++......+......|.. .............
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 215 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT-AESLWLGIRIARA 215 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 112234567889999999999999999999888777788888999999998777666544333322 2223356677788
Q ss_pred cCChhhHHHHhh
Q 000149 1196 LGRWDLMDEYLS 1207 (2037)
Q Consensus 1196 lg~Wd~lee~l~ 1207 (2037)
.|+++....+..
T Consensus 216 ~~~~~~a~~~~~ 227 (234)
T TIGR02521 216 LGDVAAAQRYGA 227 (234)
T ss_pred HhhHHHHHHHHH
Confidence 888888776644
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=93.40 E-value=24 Score=50.08 Aligned_cols=323 Identities=10% Similarity=-0.002 Sum_probs=168.3
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccC---ChhH
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSL---SLQD 1119 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~---~l~~ 1119 (2037)
...+..+..+.|.+..|...++.-.+..- .+ ....+..|++.|...++.|.+..+....... +-+.
T Consensus 392 ~~~ll~a~~~~g~~~~a~~l~~~~~~~g~---~~--------~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~ 460 (857)
T PLN03077 392 IASVLSACACLGDLDVGVKLHELAERKGL---IS--------YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS 460 (857)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhCC---Cc--------chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHH
Confidence 34555677888999999999887654321 11 2346789999999999999999998743332 3444
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
-|..|.+.|++++|+..|+..++.-+.+......+|.++.++|.++.......-+.............--+.+-.+.|++
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 56678999999999999998875433333334567777777777664332221111110000011112234455566776
Q ss_pred hhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhh
Q 000149 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2037)
Q Consensus 1200 d~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~ 1279 (2037)
+...+....... ...+|+. +..++ .++|+.++..+..++.... .+.+. ..+|........+.-.
T Consensus 541 ~~A~~~f~~~~~---------d~~s~n~-lI~~~--~~~G~~~~A~~lf~~M~~~---g~~Pd-~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 541 NYAWNQFNSHEK---------DVVSWNI-LLTGY--VAHGKGSMAVELFNRMVES---GVNPD-EVTFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHHhcCC---------ChhhHHH-HHHHH--HHcCCHHHHHHHHHHHHHc---CCCCC-cccHHHHHHHHhhcCh
Confidence 666555443311 1123432 21121 2455555555444443321 11111 1123222222222222
Q ss_pred HHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHH
Q 000149 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2037)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklA 1359 (2037)
+.|-.++.+.+.. ..+..++......+...+- |..... +-.--++.. ....+ ...|-.....|
T Consensus 605 v~ea~~~f~~M~~----~~gi~P~~~~y~~lv~~l~-r~G~~~------eA~~~~~~m-----~~~pd-~~~~~aLl~ac 667 (857)
T PLN03077 605 VTQGLEYFHSMEE----KYSITPNLKHYACVVDLLG-RAGKLT------EAYNFINKM-----PITPD-PAVWGALLNAC 667 (857)
T ss_pred HHHHHHHHHHHHH----HhCCCCchHHHHHHHHHHH-hCCCHH------HHHHHHHHC-----CCCCC-HHHHHHHHHHH
Confidence 2222222221110 0001111111111111111 111000 100001111 11111 45788888889
Q ss_pred HHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1360 RLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1360 RKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
|.+|..+.|..+..++.++. ++...+--+.++-..|+.++|.+..+..-+
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999999887776664 345666677888889999999988776644
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.19 E-value=54 Score=46.34 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHHHHHH--hccccccchHHHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHH-HHH
Q 000149 512 DLSLQKQALKRIEILIEM--IGSHLTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQ-VFA 586 (2037)
Q Consensus 512 ~~~~k~~~l~sl~~li~l--~g~~v~~~~pqI~a~L~saL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~-i~~ 586 (2037)
+-..|+++-+=|++++.. +-..+....-.|+-.|..+++ ...-+...++||+.+++.++ .+.-.++.. |--
T Consensus 667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~----~e~~~~i~k~I~E 742 (1176)
T KOG1248|consen 667 STKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS----AEHCDLIPKLIPE 742 (1176)
T ss_pred cHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHH
Confidence 456788888888988887 222455666777777777765 45678889999999999875 223223332 222
Q ss_pred HhhhhcccCCCCchhhHHHHHHHHHHHH
Q 000149 587 ALIPFLERDKDNPSVLLNKVVKILEDLV 614 (2037)
Q Consensus 587 ~lip~~~~~~~~~~~~~~~~~~il~~Li 614 (2037)
.++.+ . +.....++-+.++|.+|-
T Consensus 743 vIL~~-K---e~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 743 VILSL-K---EVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHhc-c---cccHHHHhhHHHHHHHHH
Confidence 33333 2 334455777788887775
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=59 Score=46.14 Aligned_cols=318 Identities=11% Similarity=-0.020 Sum_probs=169.4
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccC---ChhH
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSL---SLQD 1119 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~---~l~~ 1119 (2037)
+..+..+..+.+....|....+.-.+.. ..| ....+..|...|...++.|.+..+......+ +-+.
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g---~~~--------d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTG---FAV--------DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhC---Ccc--------chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 3455666667777777766665543321 111 2357899999999999999999998754333 3444
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
-+-.|-+.|++++|+..|+...+. .|+..+ ...++..+.+.|+++......+-+...........+..-+.+-.+.|
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEIT-IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 567889999999999999976543 466544 34677888888998866554443322211112223344567778899
Q ss_pred ChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHh
Q 000149 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2037)
Q Consensus 1198 ~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kL 1277 (2037)
+++...+.+..+... ...+|+. +..++ .++++..+..+...+++. .+.+ ...+|........++
T Consensus 439 ~~~~A~~vf~~m~~~--------d~vs~~~-mi~~~--~~~g~~~eA~~lf~~m~~----~~~p-d~~t~~~lL~a~~~~ 502 (857)
T PLN03077 439 CIDKALEVFHNIPEK--------DVISWTS-IIAGL--RLNNRCFEALIFFRQMLL----TLKP-NSVTLIAALSACARI 502 (857)
T ss_pred CHHHHHHHHHhCCCC--------CeeeHHH-HHHHH--HHCCCHHHHHHHHHHHHh----CCCC-CHhHHHHHHHHHhhh
Confidence 999998888776532 1234543 22222 234444444433333322 1111 122444444444444
Q ss_pred hhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHH
Q 000149 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2037)
Q Consensus 1278 h~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Ak 1357 (2037)
-.+.+-.++....... +...+..-...+.+.+-. ...++.-.. +|... .....+|-....
T Consensus 503 g~l~~~~~i~~~~~~~-----g~~~~~~~~naLi~~y~k-----~G~~~~A~~-------~f~~~---~~d~~s~n~lI~ 562 (857)
T PLN03077 503 GALMCGKEIHAHVLRT-----GIGFDGFLPNALLDLYVR-----CGRMNYAWN-------QFNSH---EKDVVSWNILLT 562 (857)
T ss_pred chHHHhHHHHHHHHHh-----CCCccceechHHHHHHHH-----cCCHHHHHH-------HHHhc---CCChhhHHHHHH
Confidence 4444444444333210 000011111112222211 011110000 11111 111346777777
Q ss_pred HHHHcCChHHHHHHHHHHhhcC-CChH--HHHHHHHHHHcCCchHHHHHHHHHh
Q 000149 1358 LCRLAGHYETATRAILEAQASG-APNV--HMEKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1358 lARKag~~~~A~~aLl~a~~~~-~p~~--~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
..-++|+.+.|.....+....+ .|+. +.--..-+-+.|..++|.+.++...
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 7777788888877777766554 2221 1111223445677777777777664
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.23 Score=46.14 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=50.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
+...+...|+|++|..+|+.+++..|++.+...++=.|+...|+++......+......|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456678999999999999999999999999999999999999999988777665554444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=2.6 Score=48.75 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHH-HcCC--chHHHHHHHHHhhcCCccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLW-STRR--SDGAIAELQQNLLNKPVEVVGSTAI 1421 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW-~~g~--~~~Ai~~L~~~i~~~~~~~~g~~~~ 1421 (2037)
+..+.|...+++....|+++.|..+..+|..+. ++.+....|..++ ..|+ ..+|...++++++..|.
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-------- 142 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-------- 142 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC--------
Confidence 346789999999999999999999999998875 4567788899775 5566 48999999999874221
Q ss_pred ccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1422 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
-.+++.++|.-..+.|+ .++++..|+++.++.|.
T Consensus 143 ----------------------------~~~al~~LA~~~~~~g~--~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 143 ----------------------------EVTALMLLASDAFMQAD--YAQAIELWQKVLDLNSP 176 (198)
T ss_pred ----------------------------ChhHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCC
Confidence 03356666666555554 77888888888888774
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=92.70 E-value=56 Score=45.23 Aligned_cols=321 Identities=11% Similarity=0.005 Sum_probs=170.2
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccC---ChhHH
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSL---SLQDE 1120 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~---~l~~q 1120 (2037)
..+..+..+++.+..|...++.-.... ..| ....+..|...|+..++.|.+..+......+ +-+.-
T Consensus 127 ~~ll~a~~~~~~~~~a~~l~~~m~~~g---~~~--------~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~l 195 (697)
T PLN03081 127 DALVEACIALKSIRCVKAVYWHVESSG---FEP--------DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI 195 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC---CCc--------chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHH
Confidence 456667777777777666665533321 111 2356889999999999999999997643332 34445
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCC-chhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPT-SVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~-~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
+-.|-+.|++++|...|+..++..+. +......++++..++|..+.......-+...........+..-+.+--+.|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 56788999999999999988765432 22333567777777777654322211111000000111223346677788999
Q ss_pred hhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhh
Q 000149 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2037)
Q Consensus 1200 d~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~ 1279 (2037)
+...+.+..+... ...+|+. +..++ .+.++.+++.+.....+.. .+.+. ..+|...-....++..
T Consensus 276 ~~A~~vf~~m~~~--------~~vt~n~-li~~y--~~~g~~~eA~~lf~~M~~~---g~~pd-~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 276 EDARCVFDGMPEK--------TTVAWNS-MLAGY--ALHGYSEEALCLYYEMRDS---GVSID-QFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHHHhCCCC--------ChhHHHH-HHHHH--HhCCCHHHHHHHHHHHHHc---CCCCC-HHHHHHHHHHHHhccc
Confidence 9888887766531 1223432 22222 2455655555555444332 12111 1245555555555555
Q ss_pred HHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHH
Q 000149 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2037)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklA 1359 (2037)
+.+-+++...+... +...+..-...+.+..-. ...+..-.. +|.... .....+|-....-.
T Consensus 341 ~~~a~~i~~~m~~~-----g~~~d~~~~~~Li~~y~k-----~G~~~~A~~-------vf~~m~--~~d~~t~n~lI~~y 401 (697)
T PLN03081 341 LEHAKQAHAGLIRT-----GFPLDIVANTALVDLYSK-----WGRMEDARN-------VFDRMP--RKNLISWNALIAGY 401 (697)
T ss_pred hHHHHHHHHHHHHh-----CCCCCeeehHHHHHHHHH-----CCCHHHHHH-------HHHhCC--CCCeeeHHHHHHHH
Confidence 55555544433210 000110011112211111 001110000 111100 01124688888888
Q ss_pred HHcCChHHHHHHHHHHhhcC-CChH--HHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1360 RLAGHYETATRAILEAQASG-APNV--HMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1360 RKag~~~~A~~aLl~a~~~~-~p~~--~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
-++|+.+.|...+.++...+ .|+. +.--..-+-..|..++|.+.++...+
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 88888888888888876665 3332 22223334566778888888877654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=92.62 E-value=22 Score=47.21 Aligned_cols=74 Identities=12% Similarity=0.001 Sum_probs=55.7
Q ss_pred hhHHHHHHHHhhCCChHHHHHHHHHhc--cCC----hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHh
Q 000149 1087 EDVSFLMEIYSFLDEPDGLSGLARLHK--SLS----LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLN 1160 (2037)
Q Consensus 1087 ~~~~~L~~IYa~LdEpDg~~Gi~~~r~--~~~----l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~ 1160 (2037)
+.+=....|+...++++-+--.+.... ..+ .+.++--+.+.|++++|...|...+...|+|...+.|+..|+..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 344466688888999887666654211 121 33455667899999999999999999999999999999999843
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.56 E-value=44 Score=43.67 Aligned_cols=363 Identities=17% Similarity=0.196 Sum_probs=189.0
Q ss_pred HHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHhhhccc
Q 000149 197 FLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADD-PLILETLLESTAELMMAVDVH 275 (2037)
Q Consensus 197 ~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~eTll~~~~~i~~~~~~~ 275 (2037)
..+.||-=+=|+|++-.+...+.+-+ . .++-....+++..+..-+.-.-+ ++=+ --|+-+|....|-..+
T Consensus 7 r~ltdKlYekRKaaalelEk~Vk~l~-----~---~~~~~~i~k~I~~L~~d~a~s~~~n~rk-GgLiGlAA~~iaLg~~ 77 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAAALELEKLVKDLV-----N---NNDYDQIRKVISELAGDYAYSPHANMRK-GGLIGLAAVAIALGIK 77 (675)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH-----c---cCcHHHHHHHHHHHHHHhccCccccccc-chHHHHHHHHHHhccc
Confidence 34588989999999999888764322 2 23344456777755443443322 2222 4455555543333222
Q ss_pred ch-hHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHh
Q 000149 276 SQ-HFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAF 354 (2037)
Q Consensus 276 ~e-~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll 354 (2037)
+- ..-.++---+.+++-++.-||--|...+-++||-.+.. +..++ +.||+-+.|-..--.++++.-|| |
T Consensus 78 ~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~----v~~~F----n~iFdvL~klsaDsd~~V~~~ae-L- 147 (675)
T KOG0212|consen 78 DAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE----VLVYF----NEIFDVLCKLSADSDQNVRGGAE-L- 147 (675)
T ss_pred cHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC----cccch----HHHHHHHHHHhcCCccccccHHH-H-
Confidence 21 23334444788999999999999999999999988664 34666 68899888888888888888887 2
Q ss_pred CCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccc--cHHHHHHHHHHHHhh
Q 000149 355 GVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQA--DERRLLSALEFYCIQ 432 (2037)
Q Consensus 355 ~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~--~~~~~~~~l~~~~~~ 432 (2037)
.+.+++-+ |..+.. ---|.+ ..|++.+.+ .... +...+.+=|..+.+-
T Consensus 148 ---LdRLikdI--------Vte~~~----tFsL~~--------~ipLL~eri-------y~~n~~tR~flv~Wl~~Lds~ 197 (675)
T KOG0212|consen 148 ---LDRLIKDI--------VTESAS----TFSLPE--------FIPLLRERI-------YVINPMTRQFLVSWLYVLDSV 197 (675)
T ss_pred ---HHHHHHHh--------cccccc----ccCHHH--------HHHHHHHHH-------hcCCchHHHHHHHHHHHHhcC
Confidence 23444433 111100 000000 122222211 1110 122223333323323
Q ss_pred cCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCC
Q 000149 433 TGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAED 512 (2037)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~ 512 (2037)
++ -++++ .+|.+++-|...+|+...+.....-.-+.+-++++. +++..+ +| =.+++.+-.. +.++.
T Consensus 198 P~---~~m~~-yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~---s~P~s~-d~-----~~~i~vlv~~-l~ss~ 263 (675)
T KOG0212|consen 198 PD---LEMIS-YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR---SSPSSM-DY-----DDMINVLVPH-LQSSE 263 (675)
T ss_pred Cc---HHHHh-cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh---cCcccc-Cc-----ccchhhcccc-ccCCc
Confidence 33 33344 678888888778877533221001111222233322 222222 11 1111222111 23455
Q ss_pred hHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHH--HhccCCCcchh--hHHHHHHHHh
Q 000149 513 LSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIE--QLSRVSPSSTK--HVISQVFAAL 588 (2037)
Q Consensus 513 ~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~--~L~~~~~~~l~--~ll~~i~~~l 588 (2037)
...|..||.=|.+++++-|..+-.+.++|..-+.-.+...+.- ..+--...+. .+.-++.+..+ .=.+.|+..+
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~--~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl 341 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM--SIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVL 341 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc--cHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHH
Confidence 6788999999999999999988888888776665555443321 2222222222 11101111111 1123455566
Q ss_pred hhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhccc
Q 000149 589 IPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHE 627 (2037)
Q Consensus 589 ip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~ 627 (2037)
..|+....+ .++-.|.+=+..|..+.+..+-.|.+.
T Consensus 342 ~~~l~~~~~---~tri~~L~Wi~~l~~~~p~ql~~h~~~ 377 (675)
T KOG0212|consen 342 TKYLSDDRE---ETRIAVLNWIILLYHKAPGQLLVHNDS 377 (675)
T ss_pred HHHhhcchH---HHHHHHHHHHHHHHhhCcchhhhhccH
Confidence 677753322 345556666666666655555444433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=92.53 E-value=1.3 Score=55.98 Aligned_cols=112 Identities=12% Similarity=0.029 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccC
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLS 1428 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~ 1428 (2037)
.+..-|.-|.+.|.++.|...+.+|.... .+.+....|..+...|+..+|+..++.++.-.+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P---------------- 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP---------------- 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------------
Confidence 46788999999999999999999998775 456788899999999999999999999876211
Q ss_pred CCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1429 LVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1429 ~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
..+.+++.+|.-+...|+ .++++..|.++++++|.....+..+++...++
T Consensus 68 --------------------~~~~a~~~lg~~~~~lg~--~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 68 --------------------SLAKAYLRKGTACMKLEE--YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred --------------------CCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 114567777766665554 78899999999999999888777776654444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=2.6 Score=46.12 Aligned_cols=102 Identities=7% Similarity=0.053 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHH
Q 000149 1381 PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRW 1460 (2037)
Q Consensus 1381 p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akw 1460 (2037)
|+.....+..+...|+.++|+..++.++...| . .+.++..+|.-
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-------------------~-----------------~~~a~~~lg~~ 67 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQP-------------------W-----------------SWRAHIALAGT 67 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------C-----------------cHHHHHHHHHH
Confidence 44455678888999999999998888765211 0 13344555554
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCC
Q 000149 1461 IHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGH 1540 (2037)
Q Consensus 1461 l~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~ 1540 (2037)
+...|+ .++++..|.+|++++|.+..+|+.+|..+...- . ...|+.+|-+++...+
T Consensus 68 ~~~~g~--~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g--------------~--------~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 68 WMMLKE--YTTAINFYGHALMLDASHPEPVYQTGVCLKMMG--------------E--------PGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHhh--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC--------------C--------HHHHHHHHHHHHHhCC
Confidence 444444 567888899999999999999999988654221 0 1258888888888776
Q ss_pred cc
Q 000149 1541 KN 1542 (2037)
Q Consensus 1541 ~~ 1542 (2037)
.+
T Consensus 124 ~~ 125 (144)
T PRK15359 124 AD 125 (144)
T ss_pred CC
Confidence 64
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.42 Score=57.90 Aligned_cols=165 Identities=15% Similarity=0.147 Sum_probs=83.9
Q ss_pred HhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh-ccC----C---hhHHHH
Q 000149 1051 FRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH-KSL----S---LQDELL 1122 (2037)
Q Consensus 1051 ~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r-~~~----~---l~~qil 1122 (2037)
..-+.|.+|+.++|.-++..+ + ...+.....+|...++.+.+..+.... ... + ......
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~---~----------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDG---D----------PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred ccccccccccccccccccccc---c----------cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 577889999999988665321 1 134566778899999999888886531 111 1 122445
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhH
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~l 1202 (2037)
.+++.|++++|..+|++++...|++.+...+++..+.+.|+.+.+....+.+....|... .+...-..+-..+|+-+.-
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-DLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC-CHCHHHHHHHHHHT-HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH-HHHHHHHHHhccccccccc
Confidence 678999999999999999999999999888888889999999875555544433323222 2223345677788888777
Q ss_pred HHHhhcccccCccccCCCCCcchHHHHHHHHHH
Q 000149 1203 DEYLSGADEEGLLCSSSESNASFDMDVAKILQA 1235 (2037)
Q Consensus 1203 ee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLla 1235 (2037)
-+++...-.. .+.+..+...++.++..
T Consensus 234 l~~~~~~~~~------~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 234 LEYLEKALKL------NPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHHHH------STT-HHHHHHHHHHHT-
T ss_pred cccccccccc------ccccccccccccccccc
Confidence 6666543221 12234455556666544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=3.1 Score=45.54 Aligned_cols=107 Identities=8% Similarity=-0.052 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCC
Q 000149 1352 WLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSL 1429 (2037)
Q Consensus 1352 WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~ 1429 (2037)
|...+..+...|+++.|.....++....+ +.+....|.++...|+..+|+..++.++.-.|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p----------------- 89 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA----------------- 89 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------
Confidence 66778999999999999999999877754 46788999999999999999999999876211
Q ss_pred CCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1430 VPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1430 ~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
.+ +.++.-+|.-+...|+ .+++++.|..|+++.|.-...|...|.-
T Consensus 90 --~~-----------------~~a~~~lg~~l~~~g~--~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 90 --SH-----------------PEPVYQTGVCLKMMGE--PGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred --CC-----------------cHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 11 3355666666655555 8899999999999999988777666543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=91.66 E-value=9.4 Score=46.96 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN 1382 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~ 1382 (2037)
..+.|...+++..+.|+++.|..+..+|...++++
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 45689999999999999999999999998877654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.33 E-value=14 Score=46.28 Aligned_cols=97 Identities=19% Similarity=0.112 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhhccCCh--hhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-hHHH
Q 000149 1309 KLMANWENRLKYTQPSL--WAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-NVHM 1385 (2037)
Q Consensus 1309 ~l~~~W~~RL~~~~~~~--~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p-~~~i 1385 (2037)
.+...|+.||...-+.. ..-+|++..=..-+.....+ ...|....++|+|++.+..|..++..|....+. +...
T Consensus 289 ~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~---p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~ 365 (400)
T COG3071 289 ALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPED---PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYA 365 (400)
T ss_pred HHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHH
Confidence 35556777755443332 22233333322222222211 256899999999999999999999988877654 4566
Q ss_pred HHHHHHHHcCCchHHHHHHHHHh
Q 000149 1386 EKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1386 E~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
+-|+.+=+.|+..+|=+.=++++
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 78999999999998888777765
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.39 Score=45.04 Aligned_cols=54 Identities=9% Similarity=0.204 Sum_probs=46.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc-ChHHHHHHhhh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC-HLQAMVTHVDG 1173 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lg-q~~~ll~~~~g 1173 (2037)
....+...|+|++|..+|+++++..|++.....++=.|+..+| +++..+...+.
T Consensus 9 ~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 9 LGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 4556788999999999999999999999999989999999999 68876665554
|
... |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=90.84 E-value=4.7 Score=55.11 Aligned_cols=112 Identities=14% Similarity=0.117 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
.+.....|++....|+++.|...+..+.++.+ ..+.+.+|..|-+.++.++|+...++.+...|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-------------- 151 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-------------- 151 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--------------
Confidence 45678889999999999999999999988754 35899999999999999999999999876311
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
..+.++.++|.-+.+.|+ .+++...|.++..-+|.-+++|..+|+-+.
T Consensus 152 ----------------------~~~~~~~~~a~~l~~~g~--~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 152 ----------------------SSAREILLEAKSWDEIGQ--SEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred ----------------------CCHHHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 126678888998888887 889999999999999999999999998664
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=90.47 E-value=2.6 Score=53.76 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=85.9
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
+...-+..+++- ...++++.|.+.+.+.... .|++.+--||++-..++..+|++.|+++++..|.
T Consensus 168 ~NyLv~~Ll~~l---~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~----------- 232 (395)
T PF09295_consen 168 NNYLVDTLLKYL---SLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQ----------- 232 (395)
T ss_pred chHHHHHHHHHH---hhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-----------
Confidence 334444555544 4467899999888887654 4777777899999999999999999999864321
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
-+..+...|+++...++ .+.+.+..++|+++.|.--++|+.||+.|=++
T Consensus 233 -------------------------d~~LL~~Qa~fLl~k~~--~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 233 -------------------------DSELLNLQAEFLLSKKK--YELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred -------------------------CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 03455566777766655 58888899999999999999999999988443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=90.19 E-value=3.5 Score=42.22 Aligned_cols=103 Identities=18% Similarity=0.175 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
+.+...+....+.|.++.|...+.++....+ +.+.+..+.++...|+..+|+..++.++...|
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------------ 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP------------ 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC------------
Confidence 4678889999999999999999988865533 34778899999999999999999998875321
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
.+ +..+.++..+|..+...++ .++..+.|.++++.+|...
T Consensus 71 -------~~--------------~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 71 -------KS--------------PKAPDALLKLGMSLQELGD--KEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred -------CC--------------CcccHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHCcCCh
Confidence 10 0113356666666655554 7788888999999888754
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=90.13 E-value=9 Score=44.96 Aligned_cols=177 Identities=18% Similarity=0.243 Sum_probs=101.3
Q ss_pred CChHHHHHHHHHHHHHHHHhccccccchHHHHHHHH-------HHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHH
Q 000149 511 EDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLM-------HAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVI 581 (2037)
Q Consensus 511 ~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~-------saL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll 581 (2037)
.+-..|..+|..|..+++--. -....+.+..+|+ ..+. ..-+...++.++..+...|.. ++++++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~--~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~----~~~~~~ 92 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNA--PEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS----HFEPYA 92 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG----GGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCC--ccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH----hHHHHH
Confidence 345666777777777766441 1123333333333 3332 234667788999999998864 589999
Q ss_pred HHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000149 582 SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2037)
Q Consensus 582 ~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2037)
+.++..|+.... +.....++.|...|..++.... +.+.+ .+..+.
T Consensus 93 ~~~l~~Ll~~~~---~~~~~i~~~a~~~L~~i~~~~~-----------~~~~~---------------------~~~~l~ 137 (228)
T PF12348_consen 93 DILLPPLLKKLG---DSKKFIREAANNALDAIIESCS-----------YSPKI---------------------LLEILS 137 (228)
T ss_dssp HHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS------------H--HH---------------------HHHHHH
T ss_pred HHHHHHHHHHHc---cccHHHHHHHHHHHHHHHHHCC-----------cHHHH---------------------HHHHHH
Confidence 988888877775 3333455666666665543211 01111 133455
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000149 662 DGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2037)
Q Consensus 662 ~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2037)
..++|.|+.||..++.-|...+...... .. .......+.+++..+..+..+.+ ++++..+-+|+..+
T Consensus 138 ~~~~~Kn~~vR~~~~~~l~~~l~~~~~~--~~----~l~~~~~~~~l~~~l~~~l~D~~-----~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 138 QGLKSKNPQVREECAEWLAIILEKWGSD--SS----VLQKSAFLKQLVKALVKLLSDAD-----PEVREAARECLWAL 204 (228)
T ss_dssp HHTT-S-HHHHHHHHHHHHHHHTT-------G----GG--HHHHHHHHHHHHHHHTSS------HHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHccch--Hh----hhcccchHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHH
Confidence 6778999999999999999999887610 00 00111235677777776666543 68999999998876
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.93 E-value=3.4 Score=50.49 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=31.5
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhh
Q 000149 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLS 70 (2037)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (2037)
.+.|--.|.|+...||.+|+..+.- ..+ ..+|..+..+.+++...|++.-...||.|.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~---~~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg 82 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQL---RGG----QDVFRLAIELCSSKNPIERDIGADILSQLG 82 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHh---cCc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3444455566666666666655432 222 234444555555555666666666666654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=4.3 Score=55.47 Aligned_cols=97 Identities=10% Similarity=0.007 Sum_probs=66.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~ 1124 (2037)
+||.+.+++|.|.-|+..+|..+.-..+ -...... -+...
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~~Pd-------------------------------~~~a~~~---------~a~~L 130 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQRFPD-------------------------------SSEAFIL---------MLRGV 130 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhCCC-------------------------------cHHHHHH---------HHHHH
Confidence 7999999999999999999997753221 1111100 01122
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhh
Q 000149 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2037)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~ 1181 (2037)
.+.++.++|+.+++++|+..|++.+.+.-+=.||.++|+|+......+.+....|+.
T Consensus 131 ~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~ 187 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEF 187 (694)
T ss_pred HHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCc
Confidence 356677788888888888888877777777777778888877776666665555543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=9.4 Score=54.40 Aligned_cols=150 Identities=13% Similarity=0.134 Sum_probs=100.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh-c-cCChhH-HH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH-K-SLSLQD-EL 1121 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r-~-~~~l~~-qi 1121 (2037)
.++.+..+.|.|..|+.+++...... | .....-.+..++.+.++++........- . .++... ..
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~-----p--------~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~ 580 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHD-----M--------SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYW 580 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccC-----C--------CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHH
Confidence 45677789999999999998743321 1 0123446677888899999877776421 1 121111 11
Q ss_pred H---HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1122 L---SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1122 l---~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
. ..+..|++++|..+|+++++..|+ .....++-.++.++|+++......+......|+...-+..++ .+....|+
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG-~aL~~~G~ 658 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG-YALWDSGD 658 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHCCC
Confidence 1 223449999999999999999996 677778888999999999888877776666665443333222 24445788
Q ss_pred hhhHHHHhhcc
Q 000149 1199 WDLMDEYLSGA 1209 (2037)
Q Consensus 1199 Wd~lee~l~~~ 1209 (2037)
++.-.+.+...
T Consensus 659 ~eeAi~~l~~A 669 (987)
T PRK09782 659 IAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHH
Confidence 87766655543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=89.36 E-value=15 Score=49.42 Aligned_cols=142 Identities=13% Similarity=-0.023 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCCh----hHHHHHHHhh
Q 000149 1054 QAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSL----QDELLSNKKS 1127 (2037)
Q Consensus 1054 ~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~l----~~qil~~E~~ 1127 (2037)
+.+.+|+.+++.-+.-. |. ....+..|..+|...+++|...-.... ...|+- ......+...
T Consensus 318 ~~~~~A~~~~~~Al~ld-----P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 385 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-----HN-------NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA 385 (553)
T ss_pred hHHHHHHHHHHHHHhcC-----CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 34778888877765432 21 123445666677777777665555431 222221 1123445667
Q ss_pred cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccc-hhhhhhHhHHHHHHHHhcCChhhHHHHh
Q 000149 1128 GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRI-PQYKKTWCMQGVQAAWRLGRWDLMDEYL 1206 (2037)
Q Consensus 1128 G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~-p~~~~~l~~~~~EAAWrlg~Wd~lee~l 1206 (2037)
|++++|..+|+++++..|.+.......+..+...|+++......+...... |.... .......+.=.+|+.+.-..++
T Consensus 386 G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~-~~~~la~~l~~~G~~~eA~~~~ 464 (553)
T PRK12370 386 GQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPI-LLSMQVMFLSLKGKHELARKLT 464 (553)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHH-HHHHHHHHHHhCCCHHHHHHHH
Confidence 777777777777777777665433223333445667766655554443322 22111 1111122222367766666555
Q ss_pred hc
Q 000149 1207 SG 1208 (2037)
Q Consensus 1207 ~~ 1208 (2037)
..
T Consensus 465 ~~ 466 (553)
T PRK12370 465 KE 466 (553)
T ss_pred HH
Confidence 44
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.33 E-value=1e+02 Score=42.05 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
-..|+.-|.+--+.|+.+.|..+|.+|....+ +......+.++-.+|+..+|.+..-.++.-
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l---------------- 713 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL---------------- 713 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc----------------
Confidence 46799999999999999999999999977653 344556667777888888998877666532
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARK 1506 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~ 1506 (2037)
.|+...+ ..-.|++++ +.|+..-.+...-.+.|++++|..-++||++|.-+.++-
T Consensus 714 ---dP~hv~s----------~~Ala~~ll-------e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G----- 768 (799)
T KOG4162|consen 714 ---DPDHVPS----------MTALAELLL-------ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG----- 768 (799)
T ss_pred ---CCCCcHH----------HHHHHHHHH-------HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-----
Confidence 1221111 112344444 445544555555678999999999999999998754331
Q ss_pred hhhhcccCCcchhhhhchHHHHHHHHHHHhccCCc
Q 000149 1507 RQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2037)
Q Consensus 1507 ~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~ 1541 (2037)
-...|..||.-|++....
T Consensus 769 -----------------d~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 769 -----------------DSKQAAECFQAALQLEES 786 (799)
T ss_pred -----------------chHHHHHHHHHHHhhccC
Confidence 123689999999987543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.17 E-value=61 Score=43.23 Aligned_cols=68 Identities=9% Similarity=-0.023 Sum_probs=36.2
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHH-----HHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNC-----LLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~C-----L~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
..-+|.+|..+|+...+..++ .||+.| +-+++.|+......+-+....|- ..+-.++---..|++.+=
T Consensus 331 s~y~~~~A~~~~~klp~h~~n-----t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~-rv~~meiyST~LWHLq~~ 403 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHHYN-----TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY-RVKGMEIYSTTLWHLQDE 403 (638)
T ss_pred HHHHHHHHHHHHHhhHHhcCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccchhHHHHHHHHHHhh
Confidence 445899999999984343333 244443 45677777665555544333331 111111222356777653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.28 E-value=1.1e+02 Score=41.04 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=51.2
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHH
Q 000149 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMD 1203 (2037)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~le 1203 (2037)
.++.+-.+-|-+.|-.+||..|.+-..=.....--+..|.-+.+...........|....-| .+.+..-|..|+=..-.
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lw-lM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILW-LMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHH-HHHHHHHHhcCCcHHHH
Confidence 46777777788888888888887543211111122445666766666666656666543333 35566678888776666
Q ss_pred HHhhc
Q 000149 1204 EYLSG 1208 (2037)
Q Consensus 1204 e~l~~ 1208 (2037)
..+..
T Consensus 605 ~il~~ 609 (913)
T KOG0495|consen 605 VILDQ 609 (913)
T ss_pred HHHHH
Confidence 55544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.20 E-value=91 Score=40.18 Aligned_cols=123 Identities=17% Similarity=0.314 Sum_probs=77.3
Q ss_pred HHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHH-HHHHhCC
Q 000149 1388 AKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSR-WIHYTGQ 1466 (2037)
Q Consensus 1388 AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~ak-wl~~s~~ 1466 (2037)
|...=..++|++|+...+.+++=+| -.+-+.-|.|- +++-.
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp------------------------------------~~~~aWTLmGHEyvEmK-- 378 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNP------------------------------------KYLSAWTLMGHEYVEMK-- 378 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCc------------------------------------chhHHHHHhhHHHHHhc--
Confidence 4444556899999999999876221 11335666654 44332
Q ss_pred CCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHH------HHHhhhhhcccCCcchhhhh----------chHHHHHH
Q 000149 1467 KQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLV------DARKRQEENSEIGPSEKRWW----------FYVPDVLL 1530 (2037)
Q Consensus 1467 ~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~------~~~~~~~~~~~~~~~~~~~~----------~~l~~ai~ 1530 (2037)
....++..|+.|++++|.-.+|||.+|+-|+-+-. =-++.. ...+.+.+.| .-+..||.
T Consensus 379 -Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~----~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 379 -NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL----ELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred -ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH----hcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 25788999999999999999999999998875510 011111 1222222222 23457999
Q ss_pred HHHHHhccCCcchhhhHHHHHHHh
Q 000149 1531 FYAKGLHRGHKNLFQALPRLLTLW 1554 (2037)
Q Consensus 1531 ~Yl~sl~~g~~~~~q~lpRlLtLW 1554 (2037)
||-+++..|.... ..+-|+-.|.
T Consensus 454 Cykrai~~~dte~-~~l~~LakLy 476 (559)
T KOG1155|consen 454 CYKRAILLGDTEG-SALVRLAKLY 476 (559)
T ss_pred HHHHHHhccccch-HHHHHHHHHH
Confidence 9999999886521 2344444444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=88.02 E-value=3 Score=44.44 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=64.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCch---hhhhhHHHHHHhccChHHHHHHhhhhhccchh--hhhhHhHHHHHHHH
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ--YKKTWCMQGVQAAW 1194 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~--~~~~l~~~~~EAAW 1194 (2037)
....|...|+.++|...|++++....+.. ...+++=.++.++|+++..+...++.....|+ +...+..+..-+.+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45668899999999999999999765543 34567778999999999888777766665554 34455566677889
Q ss_pred hcCChhhHHH
Q 000149 1195 RLGRWDLMDE 1204 (2037)
Q Consensus 1195 rlg~Wd~lee 1204 (2037)
..|+++.--+
T Consensus 87 ~~gr~~eAl~ 96 (120)
T PF12688_consen 87 NLGRPKEALE 96 (120)
T ss_pred HCCCHHHHHH
Confidence 9999976433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=87.99 E-value=11 Score=50.57 Aligned_cols=86 Identities=12% Similarity=-0.034 Sum_probs=64.1
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~ 1201 (2037)
..+...|+|++|..+|+++++..|++...+..+=.++...|+++......+......|.... +......+....|+++.
T Consensus 346 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 346 LINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-AGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhccCHHH
Confidence 35678999999999999999999999888777778889999999888888877666665322 11222334556788887
Q ss_pred HHHHhhc
Q 000149 1202 MDEYLSG 1208 (2037)
Q Consensus 1202 lee~l~~ 1208 (2037)
-.++...
T Consensus 425 A~~~~~~ 431 (553)
T PRK12370 425 AIRLGDE 431 (553)
T ss_pred HHHHHHH
Confidence 6665543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=87.41 E-value=6.6 Score=36.75 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
+|...|......|.++.|...+.++....+. .+....|.+++..|+.++|+..++..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888899999999999998888765443 4677788999999999999999888765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=87.18 E-value=1.4 Score=43.37 Aligned_cols=79 Identities=14% Similarity=0.276 Sum_probs=55.3
Q ss_pred hcCHHHHHHHHHHHHccCCCc--hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHH
Q 000149 1127 SGNWAEVFTSCEQALQMEPTS--VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDE 1204 (2037)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq~~p~~--~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee 1204 (2037)
.|+|+.|+..||+.++..|++ ......+-.|+.++|+|+......+. ....+.. ....-+..+|...+|+|+.-.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 589999999999999999853 33445568999999999988887765 2222211 2223345899999999988766
Q ss_pred Hhh
Q 000149 1205 YLS 1207 (2037)
Q Consensus 1205 ~l~ 1207 (2037)
.+.
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.09 E-value=4.3 Score=49.08 Aligned_cols=99 Identities=17% Similarity=0.090 Sum_probs=76.6
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCC
Q 000149 1357 KLCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNP 1434 (2037)
Q Consensus 1357 klARKag~~~~A~~aLl~a~~~~~p~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~ 1434 (2037)
.=+-|+|.|+.|..-=.+|..+.+.+ .+--+|.-+-+-|+...|++-.+.+|.-
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------------------------ 144 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------------------------ 144 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------------------------
Confidence 33568899999999999998887655 3446888888999999999999988752
Q ss_pred CCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000149 1435 LPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2037)
Q Consensus 1435 ~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~l 1493 (2037)
++...|+|..+|.-+-..| ..++++..|++|++++|.|+-.+-.|
T Consensus 145 ------------Dp~yskay~RLG~A~~~~g--k~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 145 ------------DPHYSKAYGRLGLAYLALG--KYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred ------------ChHHHHHHHHHHHHHHccC--cHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 1234788888888664444 48888999999999999998444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=86.79 E-value=2 Score=40.14 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcC-CchHHHHHHHHHhh
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTR-RSDGAIAELQQNLL 1409 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g-~~~~Ai~~L~~~i~ 1409 (2037)
.+..|...|....+.|.++.|.....+|.+.++. .+....+..++..| +..+|+..++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3678999999999999999999999999888654 57788999999999 68999999999876
|
... |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=86.61 E-value=2.7 Score=44.67 Aligned_cols=86 Identities=9% Similarity=0.111 Sum_probs=63.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...+...|+.++|..+|+.+++..|++......+-.|+..+|+++......+......|+....+. ....+-+..|+|+
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~-~la~~~~~~g~~~ 102 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYF-HAAECLLALGEPE 102 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHH-HHHHHHHHcCCHH
Confidence 345668899999999999999989998888888888999999998877766655444454333333 2344778889988
Q ss_pred hHHHHhh
Q 000149 1201 LMDEYLS 1207 (2037)
Q Consensus 1201 ~lee~l~ 1207 (2037)
.-.+++.
T Consensus 103 ~A~~~~~ 109 (135)
T TIGR02552 103 SALKALD 109 (135)
T ss_pred HHHHHHH
Confidence 7666544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.57 E-value=1.3 Score=41.95 Aligned_cols=57 Identities=14% Similarity=0.330 Sum_probs=48.2
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
.|.+.++|++|..+++++++..|++.......=.|+..+|+|+......+..+...|
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 367889999999999999999999988887788899999999988777776665555
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=86.10 E-value=4.3 Score=51.28 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=70.3
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
..+....-..|+|++|..+|+++++..|++.....++-.|+..+|+++..+..++..+...|....-+. ....+...+|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~-~lg~~~~~lg 84 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL-RKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH-HHHHHHHHhC
Confidence 345566678899999999999999999999998888899999999999888888776666665443333 3345667889
Q ss_pred ChhhHHHHhhc
Q 000149 1198 RWDLMDEYLSG 1208 (2037)
Q Consensus 1198 ~Wd~lee~l~~ 1208 (2037)
+++.-.+++..
T Consensus 85 ~~~eA~~~~~~ 95 (356)
T PLN03088 85 EYQTAKAALEK 95 (356)
T ss_pred CHHHHHHHHHH
Confidence 99877666544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.62 E-value=47 Score=40.87 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=113.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhcc-----CChh-
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS-----LSLQ- 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~-----~~l~- 1118 (2037)
-|++-=+..|-|.||=..+.+.+.+ +.+..+.++.|..||.+=.|..-+.-++....+ .+++
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de------------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI 179 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDE------------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI 179 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcc------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH
Confidence 4667778889999998888876653 234567889999999998887766666552211 1111
Q ss_pred -----HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHH
Q 000149 1119 -----DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAA 1193 (2037)
Q Consensus 1119 -----~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAA 1193 (2037)
+-...+....+.+.|.++.+++++.+|+.+..-+-+=+-....|+|+..+..-+.+....|++-.++.+.-.+|=
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 123445677888999999999999999987654333344567899999888888888889999888888888887
Q ss_pred HhcCChhhHHHHhhccc
Q 000149 1194 WRLGRWDLMDEYLSGAD 1210 (2037)
Q Consensus 1194 Wrlg~Wd~lee~l~~~~ 1210 (2037)
=.+|+=+.-..|+....
T Consensus 260 ~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 260 AQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 78888888788876654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=85.47 E-value=1.1e+02 Score=38.21 Aligned_cols=298 Identities=13% Similarity=0.002 Sum_probs=149.6
Q ss_pred HHHHHHHhhCCChHH-HHHHHHHhc--cCChh------HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHh
Q 000149 1090 SFLMEIYSFLDEPDG-LSGLARLHK--SLSLQ------DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLN 1160 (2037)
Q Consensus 1090 ~~L~~IYa~LdEpDg-~~Gi~~~r~--~~~l~------~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~ 1160 (2037)
-.+..+|..++.++. ..+..+... ..+.+ .+...+...|+.+.|...|+++++..|++...... -.++..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~ 88 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFG 88 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHH
Confidence 455666666665555 444433111 11111 13345678899999999999999999987643221 112222
Q ss_pred c----cChHHHHHHhhhhhccchhhhhhHhHH--HHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHH
Q 000149 1161 M----CHLQAMVTHVDGLISRIPQYKKTWCMQ--GVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQ 1234 (2037)
Q Consensus 1161 L----gq~~~ll~~~~gl~~~~p~~~~~l~~~--~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLl 1234 (2037)
+ |..+......+......|. .+... ...+....|+++.-.+.....-.. .+.+......++.++
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------~p~~~~~~~~la~i~- 158 (355)
T cd05804 89 LGDFSGMRDHVARVLPLWAPENPD---YWYLLGMLAFGLEEAGQYDRAEEAARRALEL------NPDDAWAVHAVAHVL- 158 (355)
T ss_pred hcccccCchhHHHHHhccCcCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCcHHHHHHHHHH-
Confidence 2 3333332222221122222 11222 234556788888776666543221 111222333444444
Q ss_pred HHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHH-HHhhhHHHHHHHHHHhhccccccccCCCChHHH-HHHHH
Q 000149 1235 AMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFI-VKLHLLQELEDFHAILVNDSFLEKSFLPSDLKF-SKLMA 1312 (2037)
Q Consensus 1235 al~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l-~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 1312 (2037)
...++.++..+.++.+... .......+...|-.+ .-+....+.+++..++..... ..+........ .....
T Consensus 159 -~~~g~~~eA~~~l~~~l~~-----~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~ 231 (355)
T cd05804 159 -EMQGRFKEGIAFMESWRDT-----WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA-PSAESDPALDLLDAASL 231 (355)
T ss_pred -HHcCCHHHHHHHHHhhhhc-----cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-cccCCChHHHHhhHHHH
Confidence 3345555444444333211 110111222222122 222334455665555532100 01100111121 22244
Q ss_pred HHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-----------CC
Q 000149 1313 NWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG-----------AP 1381 (2037)
Q Consensus 1313 ~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~-----------~p 1381 (2037)
.|+-++..-......|+.+.......... ......++..++.+-..|+.+.|...|..+.... ..
T Consensus 232 l~~~~~~g~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 307 (355)
T cd05804 232 LWRLELAGHVDVGDRWEDLADYAAWHFPD----HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDV 307 (355)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhcCc----ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhh
Confidence 56666665555555665554443222111 2233445788999999999999998887654321 12
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1382 NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1382 ~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
...+-.|-..|.+|+..+|+..|..++.
T Consensus 308 ~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 308 GLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566788999999999999999999876
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.46 E-value=4.4 Score=52.51 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=81.4
Q ss_pred CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHH
Q 000149 1379 GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYS 1458 (2037)
Q Consensus 1379 ~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~a 1458 (2037)
.+|++..--.=|+.-.|+.++|+..++.++...|. -+...-.||
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn------------------------------------d~~lWNRLG 471 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN------------------------------------DYLLWNRLG 471 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCc------------------------------------hHHHHHHhh
Confidence 36777777777888899999999999998763221 033455565
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhcc
Q 000149 1459 RWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHR 1538 (2037)
Q Consensus 1459 kwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~ 1538 (2037)
--+ ++-.++++++++|++|.++.|.+-+++|-||--|=.+- +-..|+.+|+.+|..
T Consensus 472 AtL--AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG----------------------~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 472 ATL--ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG----------------------AYKEAVKHLLEALSM 527 (579)
T ss_pred HHh--cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh----------------------hHHHHHHHHHHHHHh
Confidence 544 34456999999999999999999999999987663331 223577788877743
Q ss_pred CC------------cchhhhHHHHHHHh
Q 000149 1539 GH------------KNLFQALPRLLTLW 1554 (2037)
Q Consensus 1539 g~------------~~~~q~lpRlLtLW 1554 (2037)
-. +.+.++|-+.|++.
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHc
Confidence 21 24667776555544
|
|
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.36 E-value=2.2e+02 Score=41.76 Aligned_cols=181 Identities=16% Similarity=0.255 Sum_probs=100.2
Q ss_pred HhhcccccchhhhccccChh--HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHH----HHHHHHHHHHhhcCCC
Q 000149 363 KKMIPAVLPKLVVSQQDNDQ--AVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADER----RLLSALEFYCIQTGSD 436 (2037)
Q Consensus 363 ~~~~~~~LP~LVl~~~~~~~--~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~----~~~~~l~~~~~~~~~~ 436 (2037)
....+..+|.|...+ .|+. +......|=..+=.+-+.....++-.|+--|+.+.+.. ..++||....---+.+
T Consensus 993 ~p~l~kLIPrLyRY~-yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~ 1071 (1702)
T KOG0915|consen 993 EPYLKKLIPRLYRYQ-YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRP 1071 (1702)
T ss_pred hhHHHHhhHHHhhhc-cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC
Confidence 334445689999874 2332 23445555566677778888899999999999987643 4678887644333332
Q ss_pred hHHHHHhhhHHHHHHHHHhhcCCCchHHhhhh-cchhHHHHHHhhhcCCCCChhhhhHHHHHHHHH-H-hhhhhcCCCCh
Q 000149 437 NQEIFAAALPALLDELICFVDGGDSDEINERL-NRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLN-S-IDRKMLHAEDL 513 (2037)
Q Consensus 437 ~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~-~-~~~~l~~~~~~ 513 (2037)
.+-+.+-+|.+...+....+ |=-|+.|.. .+..+++.++--.+.++..-+ =-+.++.++- + ++.-++ ++-.
T Consensus 1072 -~~~~~e~lpelw~~~fRvmD--DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~--~~~~~l~~iLPfLl~~gim-s~v~ 1145 (1702)
T KOG0915|consen 1072 -FDQVKEKLPELWEAAFRVMD--DIKESVREAADKAARALSKLCVRICDVTNGA--KGKEALDIILPFLLDEGIM-SKVN 1145 (1702)
T ss_pred -hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcccCCcc--cHHHHHHHHHHHHhccCcc-cchH
Confidence 33344455655544433221 212222111 112222222211111111000 0122333321 1 233333 2223
Q ss_pred HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc
Q 000149 514 SLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN 550 (2037)
Q Consensus 514 ~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~ 550 (2037)
+.++-+|.-+..|++-.|+.+.++.|+.+.+|..+..
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcc
Confidence 4567789999999999999999999999999999874
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=84.96 E-value=4.9 Score=39.40 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=64.9
Q ss_pred HHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhcccc
Q 000149 151 IYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDE 230 (2037)
Q Consensus 151 ~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~ 230 (2037)
.+.+.|..+.+..|+..++..|.++ +. .+-+.+|-.++.|++..||.+++.++..+
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~---~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i------------- 58 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGEL---GD--------PEAIPALIELLKDEDPMVRRAAARALGRI------------- 58 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCC---TH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc---CC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------
Confidence 3667777889999999999998833 22 12455777777999999999999999873
Q ss_pred ccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 000149 231 NASSRSNELKLLDVIKLAFTAADDPLILETLLESTA 266 (2037)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~ 266 (2037)
.....+..+.+.+...++..++++++.++|
T Consensus 59 ------~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 ------GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 123456677777888888888999988876
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=84.84 E-value=4.3 Score=41.56 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=60.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhh--hhHhHHHHHHHH
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK--KTWCMQGVQAAW 1194 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~--~~l~~~~~EAAW 1194 (2037)
.+..+...|+|++|...|+.+++..|++ .+....+-+|+.+.|+++....+.+.+....|... .........+..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 3455678899999999999998888775 34556677888999999988888777665544321 122223345556
Q ss_pred hcCChhhHHHHhhc
Q 000149 1195 RLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1195 rlg~Wd~lee~l~~ 1208 (2037)
..|+++...+++..
T Consensus 88 ~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 88 ELGDKEKAKATLQQ 101 (119)
T ss_pred HhCChHHHHHHHHH
Confidence 67787776665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=84.41 E-value=24 Score=43.39 Aligned_cols=103 Identities=16% Similarity=-0.003 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
..+..|...+.+..+.|..+.|.....+|.+.++ +.+....+.++...|+.++|+..++.+++-.|
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P------------ 129 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP------------ 129 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------------
Confidence 4467899999999999999999999999887753 56778889999999999999999998875211
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
. -+.++..+|..+...|+ .+++++.|.++++.+|...
T Consensus 130 -------~-----------------~~~a~~~lg~~l~~~g~--~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 130 -------T-----------------YNYAYLNRGIALYYGGR--YELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred -------C-----------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCH
Confidence 1 13356667766655554 8889999999999999875
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=84.26 E-value=1.6e+02 Score=39.26 Aligned_cols=266 Identities=15% Similarity=0.182 Sum_probs=134.5
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchh
Q 000149 245 IKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKA 324 (2037)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~ 324 (2037)
++..+... +++..+.+...+..++.+. ...++.......|..-|-|+++.||..|.++|.+++++... ..+++.
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-~~~~~~--- 116 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-AAQLLV--- 116 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-HHHHhc---
Confidence 44545544 4444556667788887755 34444667778899999999999999999999998755421 111111
Q ss_pred hhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhh
Q 000149 325 VLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVT 404 (2037)
Q Consensus 325 ~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~ 404 (2037)
.+.+++.++..+...--.+.+.| .++|..||+. ......++.+
T Consensus 117 ---~~~l~~~i~~~L~~~d~~Va~~A---------------------------------~~~L~~l~~~-~~~~~~l~~~ 159 (503)
T PF10508_consen 117 ---DNELLPLIIQCLRDPDLSVAKAA---------------------------------IKALKKLASH-PEGLEQLFDS 159 (503)
T ss_pred ---CccHHHHHHHHHcCCcHHHHHHH---------------------------------HHHHHHHhCC-chhHHHHhCc
Confidence 12344444444432222222222 2333333321 1122233334
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhhcCCChH--HHHH--hhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhh
Q 000149 405 WIPKVLAFALHQADERRLLSALEFYCIQTGSDNQ--EIFA--AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVST 480 (2037)
Q Consensus 405 ~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~~~~~--~~~~--~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (2037)
++..-|.-++.+++...-.+++..+......+.. +... ..++.++.|| ... |.-.+ ..+.+.+..++.
T Consensus 160 ~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL----~~d--DiLvq--lnalell~~La~ 231 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL----DSD--DILVQ--LNALELLSELAE 231 (503)
T ss_pred chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh----cCc--cHHHH--HHHHHHHHHHHc
Confidence 4444444444443332223333333322222211 1111 1233333333 222 21111 123344444443
Q ss_pred hcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHH------HHHHHHHHHHHhcc-ccccchHHHHHHHHHHhc--C
Q 000149 481 VLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQ------ALKRIEILIEMIGS-HLTTYVPKILVLLMHAIN--K 551 (2037)
Q Consensus 481 ~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~------~l~sl~~li~l~g~-~v~~~~pqI~a~L~saL~--~ 551 (2037)
...-..||.+. |++..+.+.+.++..-+ +-. .|+..|.|-.. .+ .+....|+++.+|...++ .
T Consensus 232 ----~~~g~~yL~~~--gi~~~L~~~l~~~~~dp-~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 232 ----TPHGLQYLEQQ--GIFDKLSNLLQDSEEDP-RLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred ----ChhHHHHHHhC--CHHHHHHHHHhccccCC-cccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCC
Confidence 33446777775 77666655554432111 111 23444444444 33 566677999999998775 5
Q ss_pred CCcchhhhHHHHHHHHHh
Q 000149 552 ESLQCEGLSVLHFFIEQL 569 (2037)
Q Consensus 552 ~~L~~~~l~~W~~fv~~L 569 (2037)
+..+..|+.+|..+..+.
T Consensus 304 ~~~~~~A~dtlg~igst~ 321 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTV 321 (503)
T ss_pred hhHHHHHHHHHHHHhCCH
Confidence 678889999999876653
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=83.91 E-value=4.5 Score=37.46 Aligned_cols=64 Identities=28% Similarity=0.421 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh
Q 000149 1385 MEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT 1464 (2037)
Q Consensus 1385 iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s 1464 (2037)
+..|+.++..|+.++|+..+++.+...| ..+.+++.+|..+...
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P------------------------------------~~~~a~~~lg~~~~~~ 44 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP------------------------------------DNPEAWYLLGRILYQQ 44 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST------------------------------------THHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC------------------------------------CCHHHHHHHHHHHHHc
Confidence 3578999999999999999999876321 2366788889888777
Q ss_pred CCCCHHHHHHHHHHHHHhccch
Q 000149 1465 GQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1465 ~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
|+ .++....|+++++.+|..
T Consensus 45 g~--~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 45 GR--YDEALAYYERALELDPDN 64 (65)
T ss_dssp T---HHHHHHHHHHHHHHSTT-
T ss_pred CC--HHHHHHHHHHHHHHCcCC
Confidence 76 788889999999998863
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=83.90 E-value=5.2 Score=37.46 Aligned_cols=85 Identities=14% Similarity=0.186 Sum_probs=54.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...+...|+|++|..+++.+++..|++......+-.|+...|+++......+......|... ........+....|+++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-KAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-hHHHHHHHHHHHHHhHH
Confidence 34456678888888888888888887766666777788888888777666655444333322 11222334555666666
Q ss_pred hHHHHh
Q 000149 1201 LMDEYL 1206 (2037)
Q Consensus 1201 ~lee~l 1206 (2037)
...+++
T Consensus 86 ~a~~~~ 91 (100)
T cd00189 86 EALEAY 91 (100)
T ss_pred HHHHHH
Confidence 655544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=83.58 E-value=27 Score=40.89 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHH
Q 000149 1381 PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRW 1460 (2037)
Q Consensus 1381 p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akw 1460 (2037)
+...++.+..+...|+..+|+..+++.++..|. +....++++.+|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---------------------------------~~~~~~a~~~la~~ 79 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPF---------------------------------SPYAEQAQLDLAYA 79 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------------------chhHHHHHHHHHHH
Confidence 356788888899999999999999988763221 11224567777877
Q ss_pred HHHhCCCCHHHHHHHHHHHHHhccchHH---HHHHHHhhhHHH
Q 000149 1461 IHYTGQKQKEDVITLYSRVRELQPMWEK---GYFYMAKYCDDV 1500 (2037)
Q Consensus 1461 l~~s~~~~~~~i~~~Y~~A~~l~~~weK---~~~~la~y~d~l 1500 (2037)
+...++ .++++..|.++++.+|+... +|+.+|..+...
T Consensus 80 ~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~ 120 (235)
T TIGR03302 80 YYKSGD--YAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ 120 (235)
T ss_pred HHhcCC--HHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh
Confidence 776665 88899999999999986554 688888766443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=82.71 E-value=52 Score=38.50 Aligned_cols=173 Identities=13% Similarity=0.037 Sum_probs=104.5
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p-----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
....+.++..+....+.|.++.|...+.++....+. .+.+..|..+...|+..+|+..++..+...|
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-------- 101 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-------- 101 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc--------
Confidence 455678999999999999999999999988665433 3557788999999999999999999886432
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhccchHHHHHHH-
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT------GQKQKEDVITLYSRVRELQPMWEKGYFYM- 1493 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s------~~~~~~~i~~~Y~~A~~l~~~weK~~~~l- 1493 (2037)
+++ ....++..+|.-.... ...+.+++++.|.++++.+|....++..+
T Consensus 102 -----------~~~--------------~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 102 -----------NHP--------------DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred -----------CCC--------------chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 111 1123444444443322 11236778899999999999876655333
Q ss_pred --HhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCc--chhhhHHHHHHHhhhcCc
Q 000149 1494 --AKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK--NLFQALPRLLTLWFDFGS 1559 (2037)
Q Consensus 1494 --a~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~--~~~q~lpRlLtLWl~~g~ 1559 (2037)
+..+...-.............| -...|+..|-+++...++ +..+...++-......|.
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 157 RMDYLRNRLAGKELYVARFYLKRG--------AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence 3322211100000000000001 123577888887765433 334555555555555443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.83 E-value=2.4e+02 Score=39.48 Aligned_cols=165 Identities=21% Similarity=0.202 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhc
Q 000149 513 LSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFL 592 (2037)
Q Consensus 513 ~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~ 592 (2037)
...|.-|=.++|.+ .-|....++|=|++-..+ +|-=++.-+-+...++.... +..+.|.+.-|.+.|....
T Consensus 871 edvksAAs~ALGsl---~vgnl~~yLpfil~qi~s---qpk~QyLLLhSlkevi~~~s---vd~~~~~v~~IW~lL~k~c 941 (1233)
T KOG1824|consen 871 EDVKSAASYALGSL---AVGNLPKYLPFILEQIES---QPKRQYLLLHSLKEVIVSAS---VDGLKPYVEKIWALLFKHC 941 (1233)
T ss_pred HHHHHHHHHHhhhh---hcCchHhHHHHHHHHHhc---chHhHHHHHHHHHHHHHHhc---cchhhhhHHHHHHHHHHhc
Confidence 44566666677653 334566677776653322 22223343444444444421 2334555566666666555
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCC--ch--hhHHHHHHHHHhcCCCC--HHHHHHHHHhhccC
Q 000149 593 ERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPS--IA--ALTEVNKAIQEARGPMT--LKDQLLAAVDGLNH 666 (2037)
Q Consensus 593 ~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~--ip--~L~~v~~~l~~~r~~~~--l~~~l~~~~~rl~~ 666 (2037)
+...|+ ++.-+.+-|-.|+.-+.+.|.-.+...-.=++ +- ..+.++-.+.+...+.+ +..+|..|+..+++
T Consensus 942 E~~eeg---tR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~d 1018 (1233)
T KOG1824|consen 942 ECAEEG---TRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRD 1018 (1233)
T ss_pred ccchhh---hHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhC
Confidence 544333 36778888888888777766433222211010 00 00111111122223333 45788999999999
Q ss_pred CChhHHHHHHHHHHHHHhhcHHH
Q 000149 667 ENLNVRYMVVCELSKLLKLKSED 689 (2037)
Q Consensus 667 en~~Vr~~aL~eL~~~L~~~~~~ 689 (2037)
..+.||..||.-+...-..+..-
T Consensus 1019 pDl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen 1019 PDLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred CchhHHHHHHHHHHHHHccCHhH
Confidence 99999999999998877666543
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.73 E-value=1.7e+02 Score=38.90 Aligned_cols=78 Identities=22% Similarity=0.270 Sum_probs=61.6
Q ss_pred cccCCChhhHHHHHHHhhcccC-ccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000149 139 LNFHSDFSFLLNIYFEFLYDES-SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2037)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~~~-~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2037)
|-....+.++-+ |.+.++--. |-+-+=-+++....|.....+.++.- -+..++||..+|.|..+.||.-.+-+++..
T Consensus 308 va~algv~~llp-fl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~h-l~~l~~ci~~~l~D~~~~vRi~tA~alS~l 385 (975)
T COG5181 308 VADALGVEELLP-FLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSH-LGPLLKCISKLLKDRSRFVRIDTANALSYL 385 (975)
T ss_pred HHHhhCcHHHHH-HHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhh-hhhHHHHHHHHhhccceeeeehhHhHHHHH
Confidence 445677888888 888888844 88888888888888887777665433 256789999999999999999998888875
Q ss_pred h
Q 000149 218 L 218 (2037)
Q Consensus 218 ~ 218 (2037)
.
T Consensus 386 a 386 (975)
T COG5181 386 A 386 (975)
T ss_pred H
Confidence 4
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=80.99 E-value=20 Score=37.90 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
..-+..+..+.+.|+++.|...+..+...+ .+.+....|..+...|+..+|+..++.++...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------------- 82 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--------------- 82 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------------
Confidence 445677888888899999988888776654 445777788888888999999988888765211
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
. ....+..+|.-....|+ .+.+++.|+++++++|.-.
T Consensus 83 ----~-----------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 83 ----D-----------------DPRPYFHAAECLLALGE--PESALKALDLAIEICGENP 119 (135)
T ss_pred ----C-----------------ChHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhccccc
Confidence 0 02345556655555554 7788888888888888553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=80.67 E-value=4.2 Score=35.04 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000149 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2037)
Q Consensus 1452 k~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~ 1495 (2037)
.+++.+|+++.+.|+ .+++.+.|+++++.+|+...+|+.||+
T Consensus 2 ~~~~~la~~~~~~G~--~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQ--PDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357888999988887 899999999999999999999999985
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=80.61 E-value=16 Score=39.92 Aligned_cols=93 Identities=25% Similarity=0.222 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG-AP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~-~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
...+|..|+.+-..|.++.|...+..+.... ++ -+.+.-|+++..+|+.++|+..|+..-.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-------------- 113 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPD-------------- 113 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC--------------
Confidence 4568999999999999999999999887654 23 2667789999999999999999965210
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVR 1480 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~ 1480 (2037)
....+.+..++|.-+...|+ .+++++.|++|+
T Consensus 114 -----------------------~~~~~~~~~~~Gdi~~~~g~--~~~A~~~y~~Al 145 (145)
T PF09976_consen 114 -----------------------EAFKALAAELLGDIYLAQGD--YDEARAAYQKAL 145 (145)
T ss_pred -----------------------cchHHHHHHHHHHHHHHCCC--HHHHHHHHHHhC
Confidence 00124456667776666555 778888888763
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=80.09 E-value=16 Score=51.99 Aligned_cols=212 Identities=17% Similarity=0.144 Sum_probs=127.1
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000149 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2037)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2037)
.+-|--+|+|+...||..|+..+.-+- + ....+.|..+.+|....||..-+.+||-+. ... ... .
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~----~---~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~---~~~----~~~-~ 687 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETT----P---PGFGPALVAALGDGAAAVRRAAAEGLRELV---EVL----PPA-P 687 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhc----c---hhHHHHHHHHHcCCCHHHHHHHHHHHHHHH---hcc----Cch-H
Confidence 344556789999999999999887652 2 234556666678888999999888887652 000 000 0
Q ss_pred ccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchh
Q 000149 86 ACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQ 165 (2037)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 165 (2037)
...-.++..+..--...-+.|.... .-+ . ..+.+. +...+.+|+
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~-------------------------------~~~---~-~~l~~~-L~D~d~~VR 731 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALR-------------------------------AGD---A-ALFAAA-LGDPDHRVR 731 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhc-------------------------------cCC---H-HHHHHH-hcCCCHHHH
Confidence 0000111111100001111111110 001 1 134454 456666899
Q ss_pred HHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHH
Q 000149 166 LSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVI 245 (2037)
Q Consensus 166 ~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2037)
.+.+..|.++- .. +.|..++.|++..||.+++.++..+= . ... .-+..+
T Consensus 732 ~~Av~aL~~~~---~~-----------~~l~~~l~D~~~~VR~~aa~aL~~~~-----------~---~~~---~~~~~L 780 (897)
T PRK13800 732 IEAVRALVSVD---DV-----------ESVAGAATDENREVRIAVAKGLATLG-----------A---GGA---PAGDAV 780 (897)
T ss_pred HHHHHHHhccc---Cc-----------HHHHHHhcCCCHHHHHHHHHHHHHhc-----------c---ccc---hhHHHH
Confidence 99999999861 11 12344679999999999999998732 1 011 012334
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 246 KLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 246 ~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
.+ +..-+|+.|..+.+.++|.++... ++ .-.|+..|..+++.||..|..-+-.+
T Consensus 781 ~~-ll~D~d~~VR~aA~~aLg~~g~~~----~~----~~~l~~aL~d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 781 RA-LTGDPDPLVRAAALAALAELGCPP----DD----VAAATAALRASAWQVRQGAARALAGA 834 (897)
T ss_pred HH-HhcCCCHHHHHHHHHHHHhcCCcc----hh----HHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 44 334467999999999999984321 11 23478889999999999998877655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2037 | ||||
| 3ihy_A | 600 | Human Pik3c3 Crystal Structure Length = 600 | 5e-05 | ||
| 3ls8_A | 614 | Crystal Structure Of Human Pik3c3 In Complex With 3 | 5e-05 | ||
| 4anu_A | 980 | Complexes Of Pi3kgamma With Isoform Selective Inhib | 8e-05 | ||
| 4anv_A | 980 | Complexes Of Pi3kgamma With Isoform Selective Inhib | 8e-05 | ||
| 3nzs_A | 954 | Structure-Based Optimization Of Pyrazolo -Pyrimidin | 8e-05 | ||
| 3l54_A | 966 | Structure Of Pi3k Gamma With Inhibitor Length = 966 | 9e-05 | ||
| 3apc_A | 966 | Crystal Structure Of Human Pi3k-Gamma In Complex Wi | 9e-05 | ||
| 3dbs_A | 960 | Structure Of Pi3k Gamma In Complex With Gdc0941 Len | 9e-05 | ||
| 3cst_A | 966 | Crystal Structure Of Pi3k P110gamma Catalytical Dom | 9e-05 | ||
| 3qaq_A | 960 | Crystal Structure Of Pi3k-Gamma In Complex With Tri | 9e-05 | ||
| 4dk5_A | 959 | Crystal Structure Of Human Pi3k-Gamma In Complex Wi | 9e-05 | ||
| 1e8y_A | 966 | Structure Determinants Of Phosphoinositide 3-Kinase | 9e-05 | ||
| 3ene_A | 959 | Complex Of Pi3k Gamma With An Inhibitor Length = 95 | 1e-04 | ||
| 1he8_A | 965 | Ras G12v-Pi 3-Kinase Gamma Complex Length = 965 | 1e-04 | ||
| 4anx_A | 980 | Complexes Of Pi3kgamma With Isoform Selective Inhib | 2e-04 | ||
| 1e8x_A | 961 | Structural Insights Into Phoshoinositide 3-Kinase E | 3e-04 | ||
| 1e7u_A | 961 | Structure Determinants Of Phosphoinositide 3-Kinase | 3e-04 |
| >pdb|3IHY|A Chain A, Human Pik3c3 Crystal Structure Length = 600 | Back alignment and structure |
|
| >pdb|3LS8|A Chain A, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4- Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol Length = 614 | Back alignment and structure |
|
| >pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors. Length = 980 | Back alignment and structure |
|
| >pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors Length = 980 | Back alignment and structure |
|
| >pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And -Pyridine Inhibitors Of Pi3-Kinase Length = 954 | Back alignment and structure |
|
| >pdb|3L54|A Chain A, Structure Of Pi3k Gamma With Inhibitor Length = 966 | Back alignment and structure |
|
| >pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With Ch5132799 Length = 966 | Back alignment and structure |
|
| >pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941 Length = 960 | Back alignment and structure |
|
| >pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In Complex With Organoruthenium Inhibitor E5e2 Length = 966 | Back alignment and structure |
|
| >pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With Triazine-Benzimidazole 1 Length = 960 | Back alignment and structure |
|
| >pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A Pyridyl- Triazine Inhibitor Length = 959 | Back alignment and structure |
|
| >pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin And Staurosporine Length = 966 | Back alignment and structure |
|
| >pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor Length = 959 | Back alignment and structure |
|
| >pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex Length = 965 | Back alignment and structure |
|
| >pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors Length = 980 | Back alignment and structure |
|
| >pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase Enzymatic Mechanism And Signalling Length = 961 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A Length = 614 | Back alignment and structure |
|---|
Score = 96.8 bits (240), Expect = 3e-20
Identities = 41/231 (17%), Positives = 83/231 (35%), Gaps = 47/231 (20%)
Query: 1746 DLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRL 1805
+ I + A + S P ++ DG K P + K DDLR+D +++ +++++L
Sbjct: 333 QVKIRGIIPETATLFKSALMPAQLFFKTEDGGKYPVIFKHGDDLRQDQLILQIISLMDKL 392
Query: 1806 LSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQ 1865
L K L + + V+ + G ++++ + +L F +
Sbjct: 393 LRKE----NLDLKLTPYKVLATSTKHGFMQFIQSVP-VAEVLDTEGSIQNFFRK------ 441
Query: 1866 IKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSM 1925
+ + Y + A + +
Sbjct: 442 --------------------------------YAPSENGPNGISAEVMDTYVKSCAGYCV 469
Query: 1926 VGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQ 1976
+ +I+G+GDRH +N+L TG H+DF + + KP P +L +
Sbjct: 470 ITYILGVGDRHLDNLLLTK-TGKLFHIDFGYILGRD---PKPLPPPMKLNK 516
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* Length = 940 | Back alignment and structure |
|---|
Score = 97.2 bits (241), Expect = 3e-20
Identities = 62/398 (15%), Positives = 124/398 (31%), Gaps = 67/398 (16%)
Query: 1586 CLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR--QYPQQGLWIMAAVSKST 1643
L+ L + L QLV + +++ L K ++ L + W + +
Sbjct: 495 SLRKLTDDELFQYLLQLVQVLKYESYLDCELTKFLLGRALANRKIGHFLFWHLRSEMHVP 554
Query: 1644 IPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEF 1703
+ R + + L Q + L L S +T
Sbjct: 555 SVALRFG----LIMEAYCRGSTHHMKVLMKQGE-ALSKLKALNDFVKVSSQKTTKP---- 605
Query: 1704 SALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSL 1763
+ + + M + + PS+ + ++ + S
Sbjct: 606 ---QTKEMMHMCMRQETYMEA---LSHLQSPLDPSTLLEEV--------CVEQCTFMDSK 651
Query: 1764 QRPKKIVL---LGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIR 1820
+P I+ + K DDLR+D ++ +++ L + L +
Sbjct: 652 MKPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDMLTLQMIQLMDVLW----KQEGLDLRMT 707
Query: 1821 TFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPED 1880
+ +P + G++E V H+ + NI + K + + + K P +
Sbjct: 708 PYGCLPTGDRTGLIEVVLHSDTIANIQLNKSNMAATAAFNK-----DALLNWLKSKNPGE 762
Query: 1881 EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENI 1940
+ RA + + A + + +++G+GDRH +NI
Sbjct: 763 ALD---------------------------RAIEEFTLSCAGYCVATYVLGIGDRHSDNI 795
Query: 1941 LFDSTTGDCVHVDFSCLF--DKGLLLEKPELVPFRLTQ 1976
+ +G H+DF K E VPF LT
Sbjct: 796 MIRE-SGQLFHIDFGHFLGNFKTKFGINRERVPFILTY 832
|
| >2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 1092 | Back alignment and structure |
|---|
Score = 93.8 bits (232), Expect = 4e-19
Identities = 62/395 (15%), Positives = 125/395 (31%), Gaps = 62/395 (15%)
Query: 1586 CLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIP 1645
CL+ + + L QLV + ++ L + ++ L S+ P
Sbjct: 648 CLRQMSDEELSQYLLQLVQVLKYEPFLDCALSRFLLERALDNRRIGQFLFWHLRSEVHTP 707
Query: 1646 SRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSA 1705
+ I++A +GS + ++ L KL K + +S
Sbjct: 708 AVSVQFGVILEAYCRGS------VGHMKVLSKQVEALNKLKTLNSLIKLNAVKLSRAKGK 761
Query: 1706 LKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQR 1765
L + + P +P + ++ + + S +
Sbjct: 762 EAMHTCLKQSAYREALSDLQSP-------LNPCVILSEL--------YVEKCKYMDSKMK 806
Query: 1766 PKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFA 1823
P +V + K DDLR+D ++ +++ L + L + +
Sbjct: 807 PLWLVYSSRAFGEDSVGVIFKNGDDLRQDMLTLQMLRLMDLLW----KEAGLDLRMLPYG 862
Query: 1824 VIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEML 1883
+ + G++E V + + +I + K + + + D+
Sbjct: 863 CLATGDRSGLIEVVSTSETIADIQLNSSNVAATAAFNK-----DALLNWLKEYNSGDD-- 915
Query: 1884 KTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFD 1943
RA + + A + + +++G+GDRH +NI+
Sbjct: 916 -------------------------LDRAIEEFTLSCAGYCVASYVLGIGDRHSDNIMVK 950
Query: 1944 STTGDCVHVDFSCLF--DKGLLLEKPELVPFRLTQ 1976
TG H+DF + K K E VPF LT
Sbjct: 951 K-TGQLFHIDFGHILGNFKSKFGIKRERVPFILTY 984
|
| >2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A* Length = 696 | Back alignment and structure |
|---|
Score = 91.5 bits (226), Expect = 1e-18
Identities = 39/284 (13%), Positives = 84/284 (29%), Gaps = 56/284 (19%)
Query: 1694 SRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGI 1753
+ + K ++ + P I +
Sbjct: 362 VKLVAKEPGNRNKKTEKFQKLLAEQDMFKVNFTNFEPIPFPLDPEIYITKI--------V 413
Query: 1754 ADEAEILSSLQRPKKIVLLGSDGIKR-PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPES 1812
+ S P K+ + S + K DDLR+D +++ ++++LL +
Sbjct: 414 PMRTSLFKSALMPAKLTFVTSIAHHEYAAIFKHGDDLRQDQLILQMITLMDKLLRRE--- 470
Query: 1813 RRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQ 1872
L + + V+ + G +++V + R +
Sbjct: 471 -NLDLKLTPYKVLATSSKHGFLQYVDSC--------------------TVAEVLAREGNI 509
Query: 1873 FQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGL 1932
F K Y + A + ++ +++G+
Sbjct: 510 HN-------------------FFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGV 550
Query: 1933 GDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQ 1976
GDRH +N+L + G H+DF + + KP P +L++
Sbjct: 551 GDRHLDNLLLTT-NGKLFHIDFGYILGRD---PKPMPPPMKLSK 590
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A Length = 1091 | Back alignment and structure |
|---|
Score = 89.1 bits (220), Expect = 1e-17
Identities = 61/405 (15%), Positives = 123/405 (30%), Gaps = 73/405 (18%)
Query: 1583 MRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR--QYPQQGLW-IMAAV 1639
+R K L + L QLV + ++ LV+ ++ L + W + + +
Sbjct: 639 VRCLEKYLTDDKLSQYLIQLVQVLKYEQYLDNLLVRFLLKKALTNQRIGHFFFWHLKSEM 698
Query: 1640 SKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINI 1699
T+ R E + ++ + KL K +
Sbjct: 699 HNKTVSQRFGLLLESYC---------RACGMYLKHLNRQVEAMEKLINLTDILKQEKKDE 749
Query: 1700 STEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEI 1759
+ + + + + P + +E I
Sbjct: 750 TQKVQMKFLVEQMRRPDFMDALQGFLSP---------------LNPAHQLGNLRLEECRI 794
Query: 1760 LSSLQRPKKIVLLGSD------GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESR 1813
+SS +RP + D + K DDLR+D ++ ++ + +++
Sbjct: 795 MSSAKRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIW----QNQ 850
Query: 1814 RRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQF 1873
L + + + + + G++E V ++ + I + T ++
Sbjct: 851 GLDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGGLKGALQFNSHT------LHQWL 904
Query: 1874 QGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLG 1933
+ K + + A + + A + + I+G+G
Sbjct: 905 KDKNKGEI---------------------------YDAAIDLFTRSCAGYCVATFILGIG 937
Query: 1934 DRHGENILFDSTTGDCVHVDFSCLF--DKGLLLEKPELVPFRLTQ 1976
DRH NI+ G H+DF K K E VPF LTQ
Sbjct: 938 DRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQ 981
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 3e-12
Identities = 89/598 (14%), Positives = 178/598 (29%), Gaps = 169/598 (28%)
Query: 193 KCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAA 252
+ + L + + + + C + + ++LS +D S+ L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTL---------- 65
Query: 253 DDPLILETLLESTAEL--MMAVDVHSQHFLFLL--------------ILLVEQLD----N 292
+ TLL E+ +V ++ FL+ + +EQ D +
Sbjct: 66 ---RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 293 PHVTVRMNASRL-----IRKSCFFHLK----------GGCELLVSKAVLICNELFDYLSV 337
V + N SRL +R+ L+ G K + + Y
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGS----GKTWVALDVCLSYKVQ 177
Query: 338 RLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVS-QQDNDQAVNI---INELAKC 393
I + E V +M+ +L ++ + +D + NI I+ +
Sbjct: 178 CKMDFKIFWLNLKN----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 394 LNTDMVP------LIV---TWIPKVL-AFALHQADERRLLSALEFYCIQTGSDNQEIFAA 443
L + L+V K AF L C +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--------------C-KI---------- 268
Query: 444 ALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSI 503
L+ +D ++ +T ++ + + LL
Sbjct: 269 --------LLTTRFKQVTDFLSA----------ATTTHISLDHHSMTLTPDEVKSLL--- 307
Query: 504 DRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLS-VL 562
K L L ++ L + +I + L N + + C+ L+ ++
Sbjct: 308 -LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-------LATWDNWKHVNCDKLTTII 359
Query: 563 HFFIEQLSRVSPSSTKHVISQ--VF--AALIP-------FLERDKDNPSVLLNKVVKILE 611
+ L P+ + + + VF +A IP + + K + V++NK+ K
Sbjct: 360 ESSLNVL---EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS- 415
Query: 612 DLVLKNRAILKQHIHE--FPLLPSIAALTEVNKAIQEA-RGPMTLK--DQLLAAVDG--L 664
LV K I L + ++++I + P T D + +D
Sbjct: 416 -LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 665 NHENLNVRY-MVVCELSKL-------------LKLKSEDVTALINGEACSDLDVLSTL 708
+H + + + E + L+ K + N S L+ L L
Sbjct: 475 SH----IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG-SILNTLQQL 527
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 5e-12
Identities = 104/672 (15%), Positives = 210/672 (31%), Gaps = 223/672 (33%)
Query: 76 CSSIVDWDKNA-----CKLLLNVEDDILSQTVDYLLENFW--CSKCDTNVVHNQELSSKI 128
C + D K+ ++ +D + S T L FW SK +E+ K
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAV-SGT--LRL--FWTLLSK-------QEEMVQKF 82
Query: 129 VNPSDVQSKDLNF--------HSDFSFLLNIYFEF---LYDESSEEVQLSCVRV-----I 172
V +V + F S + +Y E LY+++ + + R+ +
Sbjct: 83 VE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 173 RR----------ILVHG---------TRDVLLKTRSE--------WIK-----CIEFLLL 200
R+ +L+ G DV L + + W+ E +L
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 201 NKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILET 260
+K QI D N +SRS+ +++ L + +
Sbjct: 201 MLQK-----LLYQI--------------DPNWTSRSD------------HSSNIKLRIHS 229
Query: 261 LLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELL 320
+ L+ + LL+ L N V+ ++ F+L C++L
Sbjct: 230 IQAELRRLLK----SKPYENCLLV-----LLN----VQ--NAKAWNA---FNL--SCKIL 269
Query: 321 V---SKAVLICNELFDYLSVRLASRPIMVRE---FAEAAFGVETEELVKK---MIPAVLP 371
+ K V D+LS + + E + L+ K P LP
Sbjct: 270 LTTRFKQV------TDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYLDCRPQDLP 319
Query: 372 KLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALE-FYC 430
+ V+ N + ++II E + D + W + +L + +E
Sbjct: 320 REVL--TTNPRRLSIIAESIR----DGLATWDNW---------KHVNCDKLTTIIESSLN 364
Query: 431 IQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGN--EDL 488
+ ++ +++F D L F + +P + +++ + +
Sbjct: 365 VLEPAEYRKMF--------DRLSVFPP--SAH--------IP---TILLSLIWFDVIKSD 403
Query: 489 PGFLRNHFV--GLLNSIDRKM----LHAEDLSLQKQALKRIEI---LIE----------- 528
+ N L+ K + + L L+ + + +++
Sbjct: 404 VMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 529 -MIGSHLTTYVPKILVLLMHAINKESLQ-CEGLSVLHF---FIEQ------LSRVSPSST 577
+I +L Y + H N E + ++ F+EQ + + S
Sbjct: 463 DLIPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 578 KHVISQV--FAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIA 635
+ + Q+ + I D D ++V + D + K L ++ L IA
Sbjct: 521 LNTLQQLKFYKPYI----CDNDP---KYERLVNAILDFLPKIEENL--ICSKYTDLLRIA 571
Query: 636 ALTEVNKAIQEA 647
+ E +EA
Sbjct: 572 LMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 8e-11
Identities = 106/635 (16%), Positives = 192/635 (30%), Gaps = 172/635 (27%)
Query: 1225 FDM-DVAKILQAMMKKDHFSVSDKIGVSKQV------LIAPLAAAGMDSYTRA------- 1270
FD DV + ++++ K+ D I +SK L L + + +
Sbjct: 33 FDCKDVQDMPKSILSKEEI---DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 1271 -YPFIV-KLH--------LLQELEDFHAILVNDS-FLEKSFLPSDLKFSKLMANWENRLK 1319
Y F++ + + + + L ND+ K + + KL L
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL----RQALL 145
Query: 1320 YTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG 1379
+P+ ++ G G G K +A + ++ +
Sbjct: 146 ELRPAKNV---------LIDGVLGSG-----------KTW-VAL--DVCLSYKVQCKMDF 182
Query: 1380 APNVHMEKAKLLW---STRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436
+ W S + E+ Q LL + + S S + L
Sbjct: 183 --KIF-------WLNLKNCNSPETVLEMLQKLLYQ----IDPNWTSRSDHSSNIKLRIHS 229
Query: 1437 VLSNTQTLNEKRDIAKTLL-LYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYF-YMA 1494
+ + + L + + LL L +V +
Sbjct: 230 IQAELRRLLKSKPYENCLLVL-------------LNV-------------QNAKAWNAFN 263
Query: 1495 KYCDDVLVDARKRQ-------EENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNL-FQA 1546
C +L+ R +Q + I +V K L ++L +
Sbjct: 264 LSCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 1547 L---PRLLTLWFDFGSICQRAGSSSNKDLKNVNG-KVMSIMRGCLKDL-PA-----YQWL 1596
L PR L++ R G ++ + K+VN K+ +I+ L L PA + L
Sbjct: 323 LTTNPRRLSI---IAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 1597 TVLP-------QLVSRI-CHQNEEIVRLV--KHIITSVLRQYPQQGLW-IMAAVSKSTIP 1645
+V P L+S I + V +V K S++ + P++ I + + +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 1646 SRREAA--AEII---QAAKKGSAHGNSANNLFGQFTSLI-DHLI---------------- 1683
E A I+ K + L F S I HL
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 1684 -------KLCFHAGQSKSRTINISTEFSALKRMMPLGIIM--PIQQSLTVT----LPPQD 1730
K+ H + + + +I LK P I P + L LP +
Sbjct: 499 DFRFLEQKIR-HDSTAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAILDFLPKIE 556
Query: 1731 ANLTESPSSDIFSASDLPTISGIADEAEILSSLQR 1765
NL S +D+ + + I +EA +QR
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEEAH--KQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 5e-10
Identities = 89/659 (13%), Positives = 178/659 (27%), Gaps = 224/659 (33%)
Query: 1434 PLPVLSNTQT---LNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490
P +LS + + K ++ TL L+ W KQ+E V V L+ ++
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLF--WT--LLSKQEEMVQKFVEEV--LRINYK--- 92
Query: 1491 FYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVP----DVLLFYAKGLHRGHK--NLF 1544
F M+ + E + + + D +F + R L
Sbjct: 93 FLMSPI-----------KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLT------- 1597
QAL L K++ ++G + G K W+
Sbjct: 142 QALLEL----------------RPAKNVL-IDG-----VLGSGK-----TWVALDVCLSY 174
Query: 1598 -VLPQLVSRI-------CHQNEEIVRLVK---HIITSVLRQYPQQGLWIMAAVSKSTIPS 1646
V ++ +I C+ E ++ +++ + I S I
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS---------SNIKL 225
Query: 1647 RREAAAEIIQAAKKGSAHGNSANNLFGQFTSLI-DH-----LIKLCFHAGQSK----SRT 1696
R + ++ K + N L L+ + F K +R
Sbjct: 226 RIHSIQAELRRLLKSKPYENC---L------LVLLNVQNAKAWNA-F-NLSCKILLTTRF 274
Query: 1697 INISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFS------ASDLPTI 1750
++ SA ++L LT + DLP
Sbjct: 275 KQVTDFLSAATTT-------------HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-- 319
Query: 1751 SGIADEAEILSSLQRPKKIVLLG---SDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLS 1807
E + P+++ ++ DG+ D K + T +I L+
Sbjct: 320 ----REVLTTN----PRRLSIIAESIRDGLATW-------DNWKHVNCDKLTTIIESSLN 364
Query: 1808 KYPESRRRKLYIRTFAVIPLTED------------CGMVEWVP-------HTRGLRNI-- 1846
+ RK++ +V P +++ H L
Sbjct: 365 VLEPAEYRKMF-DRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 1847 ------LQDIYIS-CGKFDRQKT-------NPQIKRIYDQFQ-GKIPED----------- 1880
+ IY+ K + + + I + +D D
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 1881 -EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGL------- 1932
+ + + +F FL F + ++ H + W+ G I+
Sbjct: 482 KNIEHPERMTLFR----MVFLD-FR----FLEQKIR--HDSTAWNASGSILNTLQQLKFY 530
Query: 1933 ------GDRHGENILFD------STTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRK 1979
D E ++ + + ++ L L+ E + QV++
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 9e-10
Identities = 104/651 (15%), Positives = 198/651 (30%), Gaps = 180/651 (27%)
Query: 806 LD-ENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMRGRKFW----------DRFSIY 854
D ++V +L +E ++ S ++ R FW +F
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSK-------DAVSGTLRLFWTLLSKQEEMVQKF--- 82
Query: 855 VKEIIAP---CLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHATGSRASIF 911
V+E++ L S + PSM R +I R ++ + +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQ----------PSMMTRMYIEQRDR---LYNDNQVFAKY 129
Query: 912 NACRGIVRHDMQTAIYLL---PYLVLNAVCHGTEEARLGIAQEILSVLDAAASD----HS 964
N R ++ A+ L +++ G LG + + LD S
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLI----DGV----LGSGKTWV-ALDVCLSYKVQCKM 180
Query: 965 GASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTSKQQGSKSKHPASSMHQ 1024
+ ++ ++ + + +L L +D + S+ ++ + S
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELRR-- 236
Query: 1025 DQLLTQCQYVSGLLSAI------PKVTLARA-SFRCQAYA----RSLMYFESHVREKSGS 1073
LL Y + LL + K A + C+ + + F S S
Sbjct: 237 --LLKSKPYENCLL--VLLNVQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 1074 FNPAAEKSGTF-EDEDVSFLMEIYSFLD-EPDGLSGLAR----LHKSL---SLQDELLSN 1124
+ S T DE S L+ +LD P L S+ S++D L +
Sbjct: 291 LD---HHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT 1184
NW V +C++ + +S+ +VL + + IP
Sbjct: 345 D---NWKHV--NCDKLTTIIESSL----NVLEPAEYRKMFDRLSVFPPS--AHIPT--IL 391
Query: 1185 WCMQGVQAAWRLGRWDLMDEYLSGADEE---------GLLCSSSESNASFDMDVAKILQA 1235
+ + W + + D L+ + + + L+
Sbjct: 392 LSL--------I--WFDVIKS----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 1236 MMKKD---HFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLL-----QELEDFH 1287
++ + H S+ D + K L +D Y Y I HL + + F
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--YSHIGH-HLKNIEHPERMTLFR 494
Query: 1288 AILVNDSFLEK-------------SFLP--SDLKFSKLMANWENRLKYTQPSLWAREPLL 1332
+ ++ FLE+ S L LKF K Y + +P
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK---------PYICDN----DP-- 539
Query: 1333 AFRRMV-----FGASGLGAEVGNCWLQYAKLCRLA------GHYETATRAI 1372
+ R+V F + + +Y L R+A +E A + +
Sbjct: 540 KYERLVNAILDF-LPKIEENLICS--KYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 2e-08
Identities = 124/759 (16%), Positives = 231/759 (30%), Gaps = 235/759 (30%)
Query: 549 INKESLQCEGLSVLHF---FIEQLS-RVSPSSTKHVISQVFAALIPFLERDKDNPSVLLN 604
+ Q + + + F F++ + K ++S+ I + KD ++
Sbjct: 11 TGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSK---EEIDHIIMSKDA----VS 62
Query: 605 KVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQ-EARGPMTLKDQLLAAVDG 663
+++ L+ K ++++ + E L + L I+ E R P + + D
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFLMS---PIKTEQRQPSMMTRMYIEQRDR 118
Query: 664 LNHEN-----LNV-RYMVVCEL-SKLLKLKSED-VTALINGEACSDLDVLSTLISSLLRG 715
L ++N NV R +L LL+L+ V I+G + G
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDG----------------VLG 160
Query: 716 CAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLAR 775
G K A V C +K++C D IF L +L
Sbjct: 161 S--------G---KTWVA-----------LDV----CLSYKVQCKMDFKIFWL---NLKN 191
Query: 776 AFRAAPDTIIQDSAALAIQELLKIAGCEASLDENVPASILQV-------LKDKEH---LT 825
P+T+++ L Q + + N+ I + LK K + L
Sbjct: 192 CNS--PETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 826 VVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPS 885
V+ N+ + K W+ F++ K ++ T+RF+ +D +S S
Sbjct: 249 VL-------LNV-----QNAKAWNAFNLSCKILL----TTRFK--QVTDFLSAATTTHIS 290
Query: 886 MSFRRWIYYWIRKLTVHATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEAR 945
+ LT S+ D LP E
Sbjct: 291 LDHHSM------TLTPDEV---KSLLLKYLDCRPQD-------LP-----------REV- 322
Query: 946 LGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSES 1005
L LS++ S+ D L W D+ K +
Sbjct: 323 LTTNPRRLSII--------AESIR-----------------DGLATW-DNWKH--VNCDK 354
Query: 1006 LTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLS------AIPKVTLARASFRCQAYARS 1059
LT+ + +S + + + LS IP + L+
Sbjct: 355 LTTIIE-------SSLNVLEPAEYRKMFDR--LSVFPPSAHIPTILLSL--IWFDVIKSD 403
Query: 1060 LMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSL---- 1115
+M + + + S EK E + IY L+ L LH+S+
Sbjct: 404 VMVVVNKLHKYS-----LVEKQP---KESTISIPSIY--LELKVKLENEYALHRSIVDHY 453
Query: 1116 SLQDELLSNKKSGNWAE--VF-------TSCEQALQMEPTSVQRHSDVLNCLLNMCHLQA 1166
++ S+ + + + + E +R + L+ L+
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP--------ERMTLFRMVFLDFRFLEQ 505
Query: 1167 MVTHVDG----------LISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLC 1216
+ H + ++ YK C + + ++D +L EE L+C
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN--AILD-FLPKI-EENLIC 561
Query: 1217 SSSESNASFDMDVAKILQ-AMMKKDHFSVSDKIGVSKQV 1254
S +L+ A+M +D + KQV
Sbjct: 562 SKY----------TDLLRIALMAEDEAIFEEA---HKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 8e-08
Identities = 98/624 (15%), Positives = 186/624 (29%), Gaps = 200/624 (32%)
Query: 1132 EVFTSCE-QALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGV 1190
+ + E + M +V + LL+ + + V+ ++ YK + M +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-QEEMVQKFVEEVLR--INYK--FLMSPI 98
Query: 1191 QAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDM----DVAKILQAMMK-KDH--FS 1243
+ R + Y+ D L + ++ A +++ K+ QA+++ +
Sbjct: 99 KTEQR-QPSMMTRMYIEQRDR---LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 1244 VSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIV----------KLHLLQELEDFHAILVND 1293
+ +G K + + + F + +L+ L+ + +
Sbjct: 155 IDGVLGSGKTWVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 1294 SFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREP----LLAFRRMVFGASGLGAEVG 1349
+ +S S++K + + + L+ L +P LL V
Sbjct: 213 -WTSRSDHSSNIKLR--IHSIQAELRR----LLKSKPYENCLLVLL-----------NVQ 254
Query: 1350 NCW-LQYAKL-CR--LAGHYETATRAILEAQASGAPNVHMEK-----------AKLLWST 1394
N L C+ L ++ T + A + H K L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-C 313
Query: 1395 RRSD-------------GAIAELQQNLLN--KPVEVVGSTAISSITSLSLVPLNP----- 1434
R D IAE ++ L + V +++I SL L P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 1435 ----LPVLSN-----TQTL---------NEKRDIAKTLLLYS---RW-------IH--YT 1464
L V T L ++ + L YS + I Y
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 1465 GQKQKED--------VITLYSRVR-----ELQPMWEKGYFYMAKYCDDVLVDARKRQEEN 1511
K K + ++ Y+ + +L P + YFY
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY------------------- 474
Query: 1512 SEIGPSEKRWWFYVPDVLLFYAKGLHRGHK-NLFQALPRLLTLWFDF--------GSICQ 1562
S IG + K + + LF R++ L F F +
Sbjct: 475 SHIG---------------HHLKNIEHPERMTLF----RMVFLDFRFLEQKIRHDSTAWN 515
Query: 1563 RAGSSSN--KDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICH---QNEEIVRLV 1617
+GS N + LK + C D P Y+ +LV+ I + EE +
Sbjct: 516 ASGSILNTLQQLKFYKPYI------CDND-PKYE------RLVNAILDFLPKIEENLICS 562
Query: 1618 KHIITSVLR---QYPQQGLWIMAA 1638
K+ T +LR + ++ A
Sbjct: 563 KY--TDLLRIALMAEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 2e-06
Identities = 41/314 (13%), Positives = 95/314 (30%), Gaps = 82/314 (26%)
Query: 1 MTESDS-EILDLALRDEFDEVRAEAVISLPVIVMWSGLG-VLTNVFKRLESLGKDECEKV 58
+T + +L L ++ E + + P + S + + + ++ C+K+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKL 355
Query: 59 KR----------------------VFP----ISFGFLSCLSGTCSSIVDWDKNACKLLLN 92
VFP I LS + W ++ +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI---------W----FDVIKS 402
Query: 93 VEDDILSQTVDYLLENFWCSKCDTNVVHN------------QELSSKIVNPSDVQSKDLN 140
++++ Y L K T + + L IV+ ++ +
Sbjct: 403 DVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 141 FHSDFSFLLNIYFEFL-Y----DESSEEVQLSCVRVIRRILVHGTRDV------LLKTRS 189
+L ++ + + E E + L R + + D + +
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-----FRMVFL----DFRFLEQKIRHDST 512
Query: 190 EWIKCIEFL-LLNKRKAIRDAFCTQIGYFLQDTVLSSL--FLDENASSRSNELKLLDVIK 246
W L L + K + C + + +++++ FL K D+++
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKY--ERLVNAILDFL-PKIEENLICSKYTDLLR 569
Query: 247 LAFTAADDPLILET 260
+A A D+ + E
Sbjct: 570 IALMAEDEAIFEEA 583
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2037 | |||
| 3ls8_A | 614 | Phosphatidylinositol 3-kinase catalytic subunit ty | 100.0 | |
| 2x6h_A | 696 | GH13170P, VPS34, phosphotidylinositol 3 kinase 59F | 100.0 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 100.0 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 100.0 | |
| 2y3a_A | 1092 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 100.0 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 100.0 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.98 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.95 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.9 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.79 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.78 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.73 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.7 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.68 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.62 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.53 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.53 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 98.51 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.48 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.4 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.39 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 98.36 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.29 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.26 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.15 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.14 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 97.99 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 97.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 97.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 97.8 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 97.75 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 97.72 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 97.65 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 97.63 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 97.61 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 97.6 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 97.56 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.46 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 97.38 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.35 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 97.34 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.31 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.28 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 97.26 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 97.22 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 97.16 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 97.12 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.08 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 97.07 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 97.02 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 96.94 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 96.82 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 96.79 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 96.77 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 96.71 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 96.67 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 96.66 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 96.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 96.64 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 96.55 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 96.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 96.51 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 96.5 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 96.49 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 96.47 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 96.45 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 96.4 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 96.36 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 96.34 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 96.33 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 96.28 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 96.26 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 96.22 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 96.22 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 96.21 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 96.2 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 96.19 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 96.17 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 96.12 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 96.11 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 96.1 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 96.09 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 96.08 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 96.07 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 96.0 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 95.99 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 95.96 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 95.91 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 95.89 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 95.81 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 95.77 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 95.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 95.73 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.72 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 95.69 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 95.64 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 95.59 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 95.52 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 95.47 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 95.4 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 95.26 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 95.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 95.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 95.19 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 95.17 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 95.17 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 95.05 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 95.04 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 94.99 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 94.94 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 94.77 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 94.71 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 94.69 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 94.68 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 94.66 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 94.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 94.65 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 94.63 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 94.6 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 94.48 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 94.36 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 94.34 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 94.32 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 94.3 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 94.25 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 94.25 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 94.19 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 94.09 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 94.03 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 93.97 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 93.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 93.93 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 93.84 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 93.84 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 93.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 93.76 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 93.67 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 93.53 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 93.52 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 93.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 93.42 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 93.4 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 93.32 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 93.32 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 93.3 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 93.19 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 93.19 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 93.13 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 93.11 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 93.01 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 92.94 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 92.91 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 92.84 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 92.83 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 92.82 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 92.78 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 92.77 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 92.77 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 92.68 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 92.57 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 92.56 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 92.55 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 92.54 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 92.43 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 92.38 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 92.32 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 92.31 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 92.22 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 92.13 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 91.98 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 91.94 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 91.91 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 91.91 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 91.83 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 91.75 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 91.69 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 91.66 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 91.65 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 91.64 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 91.43 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 91.39 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 91.28 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 91.27 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 91.13 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 91.09 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 91.08 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 91.05 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 91.04 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 90.9 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 90.86 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 90.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 90.69 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 90.61 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 90.61 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 90.56 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 90.44 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 90.2 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 90.12 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 89.59 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 89.14 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 89.02 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 88.97 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 88.86 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 88.79 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 88.66 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 88.1 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 88.05 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 88.0 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 87.93 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 87.91 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 87.55 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 87.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 87.26 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 87.11 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 86.94 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 86.8 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 86.74 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 86.58 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 86.44 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 86.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 85.85 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 85.74 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 85.63 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 85.51 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 85.08 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 84.98 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 84.81 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 84.16 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 83.93 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 83.91 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 83.4 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 82.84 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 82.79 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 82.3 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 82.29 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 82.28 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 82.21 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 82.08 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 82.03 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 81.76 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 81.41 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 81.41 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 80.58 |
| >3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-50 Score=508.09 Aligned_cols=415 Identities=18% Similarity=0.257 Sum_probs=291.9
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCcccccc---CCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHH
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRA---GSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLV 1603 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLi 1603 (2037)
.|+.-|++|+.+....-..-...+|.-|-.......-+ +.-.+ ..|.+.--+.+..++..-.+.++||||
T Consensus 63 ~aL~kfL~sV~W~~~~e~~~a~~LL~~W~~i~~~dALELL~~~f~d-------~~VR~yAV~~L~~~~D~eL~lYLlQLV 135 (614)
T 3ls8_A 63 KALTKFLKCVNWDLPQEAKQALELLGKWKPMDVEDSLELLSSHYTN-------PTVRRYAVARLRQADDEDLLMYLLQLV 135 (614)
T ss_dssp GGHHHHHTTCCTTSHHHHHHHHHHHHHSCCCCHHHHGGGGSTTCCC-------HHHHHHHHHHHTTSCHHHHHHTHHHHH
T ss_pred hHHHHHhccCCCCCHHHHHHHHHHHhhCCCCCHHHHHHhCcccCCC-------HHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 47888999999887654333458999995443210000 00011 234555556788999999999999999
Q ss_pred hhccCCChHH--------------------------------------------------------------HHHHHHHH
Q 000149 1604 SRICHQNEEI--------------------------------------------------------------VRLVKHII 1621 (2037)
Q Consensus 1604 SRI~h~~~~v--------------------------------------------------------------~~~l~~Ii 1621 (2037)
..+.+.+-.- ..+..-+|
T Consensus 136 QALKyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLi 215 (614)
T 3ls8_A 136 QALKYENFDDIKNGLEPTKKDSQSSVSENVSNSGINSAEIDSSQIITSPLPSVSSPPPASKTKEVPDGENLEQDLCTFLI 215 (614)
T ss_dssp HHGGGSCHHHHHHTC------------------------CCGGGSTTCCCCC-------------------CCCHHHHHH
T ss_pred HhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCChHHHHHH
Confidence 9998764321 12444555
Q ss_pred HHHHHhcc---hhHHHHHHHhhcCCc-----HHHHHHHHHHHHHHHhcCCCCCc----hhhHHHHHHHHHHHHHHHHhcc
Q 000149 1622 TSVLRQYP---QQGLWIMAAVSKSTI-----PSRREAAAEIIQAAKKGSAHGNS----ANNLFGQFTSLIDHLIKLCFHA 1689 (2037)
Q Consensus 1622 ~~v~~~yP---qq~lw~l~~~~kS~~-----~~R~~~a~~Il~~~k~~~~~~~~----~~~li~~~~~l~~~Li~l~~~~ 1689 (2037)
.|.. ..| +..+|++.+.+.... +.-.++...+++.+......+.. ....+..-..+.+.|.+++..-
T Consensus 216 ~RAl-~n~~ig~~lyW~L~~E~~~~~~~~~~~~~~~~Y~~vl~~~l~~l~~g~~~~~~~r~~L~~Q~~~~~~L~~l~~~v 294 (614)
T 3ls8_A 216 SRAC-KNSTLANYLYWYVIVECEDQDTQQRDPKTHEMYLNVMRRFSQALLKGDKSVRVMRSLLAAQQTFVDRLVHLMKAV 294 (614)
T ss_dssp HHHH-TCHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-cCHHHHHHHHhheeeeccCccccccchHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554 445 456899988764321 11123344444443321111111 1122322235666666665321
Q ss_pred CCc-cccccchhhhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCCcEEeeecc-ceEEecCCCcee
Q 000149 1690 GQS-KSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIAD-EAEILSSLQRPK 1767 (2037)
Q Consensus 1690 ~~~-~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f~~-~v~V~~S~~~Pr 1767 (2037)
... ..+. +.-..++.+.... ....++.. ..-++|..+.++|.+|.+ .+.|++|+++||
T Consensus 295 ~~~~~~~~----kk~e~L~~~L~~~--------~~~~l~~~--------~~~~lPl~P~v~I~~i~p~~~~V~~Sk~~P~ 354 (614)
T 3ls8_A 295 QRESGNRK----KKNERLQALLGDN--------EKMNLSDV--------ELIPLPLEPQVKIRGIIPETATLFKSALMPA 354 (614)
T ss_dssp HHSCSCHH----HHHHHHHHHHHCH--------HHHCCSSC--------SSEEETTEEEEEEEEECGGGCEECSSTTCCE
T ss_pred HhhccchH----HHHHHHHHHHhch--------hhcccccC--------CCCCCCCCCceEEEEEecCeeEEeecccCeE
Confidence 100 0000 0011122221100 00111110 112345567799999985 789999999999
Q ss_pred EEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHH
Q 000149 1768 KIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNIL 1847 (2037)
Q Consensus 1768 ki~i~GsdGk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~ 1847 (2037)
+|+|+|+||+.|+||+|++||||||+|+||++++||++|+++. ++|++++|+|||+++++||||||++ .|+++|+
T Consensus 355 ~l~~~gsDG~~y~~i~K~gDDLRQD~~~~Ql~~l~n~il~~~~----ldL~i~~Y~Vipls~~~GlIE~V~~-~tl~~il 429 (614)
T 3ls8_A 355 QLFFKTEDGGKYPVIFKHGDDLRQDQLILQIISLMDKLLRKEN----LDLKLTPYKVLATSTKHGFMQFIQS-VPVAEVL 429 (614)
T ss_dssp EEEEEETTSCEEEEEEEESSCCHHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSSSEEEEECCCC-EEHHHHH
T ss_pred EEEEEccCCCEEEEEEecCCcchHHHHHHHHHHHHHHHHHhcC----CCceeeccEEEEecCCCceEEEeCC-ccHHHHH
Confidence 9999999999999999999999999999999999999999873 7899999999999999999999998 5888876
Q ss_pred HHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHH----HHHHHHHHHHHHHH
Q 000149 1848 QDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW----FRARVAYAHTTAVW 1923 (2037)
Q Consensus 1848 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w----~~aR~~Ft~SlAv~ 1923 (2037)
.. .| .+.+||.+.+|++..| +.+|.+|++|+|+|
T Consensus 430 ~~----~~--------------------------------------~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~y 467 (614)
T 3ls8_A 430 DT----EG--------------------------------------SIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGY 467 (614)
T ss_dssp HH----TS--------------------------------------SHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHH
T ss_pred Hc----cC--------------------------------------hHHHHHHHhCCCccccccccHHHHHHHHHHHHHH
Confidence 43 00 2467888888887765 57999999999999
Q ss_pred HHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhh----HHHHHhhHHH
Q 000149 1924 SMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHF----IVILSPLFFP 1998 (2037)
Q Consensus 1924 SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~----~~~~~~~f~~ 1998 (2037)
||+|||||||||||+||||| .||+++|||||++|++++ +||.||||||+||++ ||..|.+| ...+..+|.+
T Consensus 468 Svv~YILGigDRH~~NILld-~tG~v~HIDFG~~f~~~p---~pe~vPFRLT~~mv~~mG~~~~e~f~~Fr~~c~~~~~~ 543 (614)
T 3ls8_A 468 CVITYILGVGDRHLDNLLLT-KTGKLFHIDFGYILGRDP---KPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLH 543 (614)
T ss_dssp HHHHHHHTCCCCCTTSEEEC-TTSCEEECCCSSCTTCCS---SSSCCSSCCCHHHHHHTTCTTSHHHHHHHHHHHHHHHH
T ss_pred hHhheeeeccCCCCcceeEc-CCCCEeeeehHHhhccCC---CCCCCCeecCHHHHHHhCCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999 799999999999999884 799999999999999 88888875 4445578889
Q ss_pred hhh---hhhHhhcccCCCCccchhhh
Q 000149 1999 LKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1999 ~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
+|+ .|+.++++|. ++-+||+..
T Consensus 544 LR~~~~~il~l~~lM~-~s~lp~~~~ 568 (614)
T 3ls8_A 544 LRRYSNLILNLFSLMV-DANIPDIAL 568 (614)
T ss_dssp HHHTHHHHHHHHHTTT-TSCCHHHHT
T ss_pred HHHCHHHHHHHHHHHh-cCCCCcccc
Confidence 998 7888899998 667999974
|
| >2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-49 Score=505.90 Aligned_cols=420 Identities=15% Similarity=0.213 Sum_probs=297.5
Q ss_pred HHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccc---cCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHH
Q 000149 1526 PDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQR---AGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQL 1602 (2037)
Q Consensus 1526 ~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQL 1602 (2037)
+.|+.-|++|+.+.+..-..-...+|.-|-..+....- .+.-. +..|.+.--+.+...|....+..+|||
T Consensus 76 ~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~~~dALeLL~~~f~-------~~~VR~yAV~~L~~~~de~L~~YLlQL 148 (696)
T 2x6h_A 76 KKALTKFLKCINWKLEDEVTQALWMLANWAPMDVEDALELLSPTFT-------HPQVRKYAVSRLAQAPDEDLLLYLLQL 148 (696)
T ss_dssp HHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCCHHHHHHHHSTTCC-------CHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHhcccCC-------CHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 46999999999988765444455799999543321000 00001 123444445567778999999999999
Q ss_pred HhhccCCChH----------------------------------------------------------------------
Q 000149 1603 VSRICHQNEE---------------------------------------------------------------------- 1612 (2037)
Q Consensus 1603 iSRI~h~~~~---------------------------------------------------------------------- 1612 (2037)
|..|.+.+..
T Consensus 149 VQALKyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (696)
T 2x6h_A 149 VQALKYEDPRHIVHLHGCIFPERDVVRSILDDNGSLLDQSSLSDLSATSSGLHASVIPANQRAASVLAAIKSDKSVSPGS 228 (696)
T ss_dssp HHHGGGSCHHHHHHHHHHHC------------------------------------------------------------
T ss_pred HHHHHhcchhhhcccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999887310
Q ss_pred -----------------------------------------------HHHHHHHHHHHHHHhcc---hhHHHHHHHhhcC
Q 000149 1613 -----------------------------------------------IVRLVKHIITSVLRQYP---QQGLWIMAAVSKS 1642 (2037)
Q Consensus 1613 -----------------------------------------------v~~~l~~Ii~~v~~~yP---qq~lw~l~~~~kS 1642 (2037)
+..-|...|.+-+...| ++.+|+|.+.+..
T Consensus 229 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLl~rA~~n~~i~h~l~W~L~~e~~~ 308 (696)
T 2x6h_A 229 AGGSGSGGQGSVALPNPSAPATPGSSSLPCDSNSNALMLAEGISFGSVPANLCTFLIQRACTNATLANYFYWYLSIEVEE 308 (696)
T ss_dssp --------------------------------------------------CHHHHHHHHHTTCHHHHHHHHHHHHHHHCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHhhChhhHHHHHHHhHhhccC
Confidence 01122333444443333 7889999988754
Q ss_pred --C----cHHHHHHHHHHHHHHHhcCCC----CCchhhHHHHHHHHHHHHHHHHhccCCccccccchhhhhHHHHhhccC
Q 000149 1643 --T----IPSRREAAAEIIQAAKKGSAH----GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPL 1712 (2037)
Q Consensus 1643 --~----~~~R~~~a~~Il~~~k~~~~~----~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~~~ls~~f~~l~~~~~~ 1712 (2037)
. .+....+...|++.+...... +......+..-..++++|.+++..-...+..+ ......++.+...
T Consensus 309 ~~~~~~~~~~~~~~~~~il~~~l~~l~~g~~~~~~~~~~l~~Q~~~~~~L~~i~~~ik~~~~~~---~~k~e~L~~~L~~ 385 (696)
T 2x6h_A 309 VESVRKQDERAHDMYAMVLKMFLKVLENGNFNLRGIFYNLRKQRRFIDELVKLVKLVAKEPGNR---NKKTEKFQKLLAE 385 (696)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCH---HHHHHHHHHHHHS
T ss_pred ccccccccchHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCccH---HHHHHHHHHHhcc
Confidence 1 133455666666655322111 01123445555667888888764311100000 0111122222110
Q ss_pred CcccccccccccccCCCCCCCCCCCCCCCccCCCCcEEeeecc-ceEEecCCCceeEEEEEecC-CCeeeEEecCCCcch
Q 000149 1713 GIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIAD-EAEILSSLQRPKKIVLLGSD-GIKRPFLCKPKDDLR 1790 (2037)
Q Consensus 1713 ~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f~~-~v~V~~S~~~Prki~i~Gsd-Gk~y~fLvK~~dDlR 1790 (2037)
.. ++ ...+... ..-++|..+.++|.+|.+ .+.|++|+++||+|+|+|+| |+.|+||+|++||+|
T Consensus 386 ~~--~~----~~~l~~~--------~~~~lP~~p~v~I~~~~~~~~~V~~S~~~P~~l~~~gsD~G~~y~~i~K~gDDLR 451 (696)
T 2x6h_A 386 QD--MF----KVNFTNF--------EPIPFPLDPEIYITKIVPMRTSLFKSALMPAKLTFVTSIAHHEYAAIFKHGDDLR 451 (696)
T ss_dssp TT--SS----SSCTTSC--------CCEECSSCTTSEEEEECGGGCEECSSSSCCEEEEEEETTTTCEEEEEEECSSCTH
T ss_pred hh--hc----ccccccC--------CCccCCCCCCeEEEEEecCeEEEcccccCCeEEEEEecCCCCceeEEEecCcccc
Confidence 00 00 0001000 012334456689999985 69999999999999999999 999999999999999
Q ss_pred hhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCCccHHHHHHHHHHhcCCCccccCchHHHHHH
Q 000149 1791 KDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIY 1870 (2037)
Q Consensus 1791 qD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~ 1870 (2037)
||+|+||++++||.+|+++. ++|++++|+|||+++++||||||++ .|+++|++++
T Consensus 452 QD~rv~Ql~~lmn~il~~~~----~~L~i~~Y~Vipls~~~GLIE~V~s-~tl~~i~~~~-------------------- 506 (696)
T 2x6h_A 452 QDQLILQMITLMDKLLRREN----LDLKLTPYKVLATSSKHGFLQYVDS-CTVAEVLARE-------------------- 506 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSTTCEEEECCCC-EEHHHHHHHS--------------------
T ss_pred hhHHHHHHHHHHHHHHHhCC----CCcEEeccEEEeccCCCCeeeeCCC-ccHHHHHHhc--------------------
Confidence 99999999999999999984 8999999999999999999999975 7999998641
Q ss_pred HHHhcCCChhHHHHHhhcCCCchhHHHHHHHhCCChhHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCCceeEecCC
Q 000149 1871 DQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWF----RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTT 1946 (2037)
Q Consensus 1871 ~~~~~~~~~~~~~~~~i~~~~ppvl~~~f~~~f~~p~~w~----~aR~~Ft~SlAv~SmvgYILgLGDRH~eNILid~~t 1946 (2037)
+ .+++||.+.||++..|| .+|++|++|+|+|||+|||||||||||+||||| .|
T Consensus 507 ----~------------------~l~~~f~~~~p~~~~~~~~~~~ar~nF~~SlA~~Svv~YILGlGDRH~~NILid-~t 563 (696)
T 2x6h_A 507 ----G------------------NIHNFFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGVGDRHLDNLLLT-TN 563 (696)
T ss_dssp ----S------------------SHHHHHHHHSBCTTSSSSBCHHHHHHHHHHHHHHHHHHHHHTCCCCCTTTEEEC-TT
T ss_pred ----C------------------hHHHHHHHHCCCccchhhhHHHHHHHHHHHHHHHHHHHHHccCCCCCCcceEEe-CC
Confidence 0 15689999999998876 899999999999999999999999999999999 69
Q ss_pred CcEEEeecccccccCCCCCCCCCCCcccChhHHh-hcccchhh----HHHHHhhHHHhhh---hhhHhhcccCCCCccch
Q 000149 1947 GDCVHVDFSCLFDKGLLLEKPELVPFRLTQVRKS-YGLCAMHF----IVILSPLFFPLKK---ILIYVCLVPQPSSFYSC 2018 (2037)
Q Consensus 1947 G~vvHIDF~~~f~~g~~l~~pE~VPFRLT~nmvd-~G~~g~e~----~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~ 2018 (2037)
|+++|||||++|++++ +||.||||||+||++ ||..|.+| ...+..+|.++|+ .|..++++|- ++-+||
T Consensus 564 G~v~HIDFG~~f~~~p---~pe~VPFRLT~~mv~~mG~~g~eg~~~Fr~~c~~~~~~LR~~~~~il~ll~lml-~~~lp~ 639 (696)
T 2x6h_A 564 GKLFHIDFGYILGRDP---KPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCYTAYLHLRRHANVMLNLFSLMV-DATVPD 639 (696)
T ss_dssp SCEEECCCCSCTTCCS---SSCCCSSCCCHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT-TCCCTT
T ss_pred CCEEEEeehhhhccCC---CCcCCCeecCHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH-cCCCCc
Confidence 9999999999999884 699999999999999 89888875 3445577788888 7777888885 566899
Q ss_pred hhh
Q 000149 2019 EYS 2021 (2037)
Q Consensus 2019 ~~~ 2021 (2037)
+..
T Consensus 640 ~~~ 642 (696)
T 2x6h_A 640 IAL 642 (696)
T ss_dssp TTS
T ss_pred ccc
Confidence 874
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-49 Score=525.02 Aligned_cols=428 Identities=17% Similarity=0.204 Sum_probs=299.3
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHHhhc
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLiSRI 1606 (2037)
.|+..+++|+.+.+.....-+-.+|.-|-.......-+- -+..+ .+..|.+..-+.+..+|...|+.++||||..|
T Consensus 440 ~aL~~~l~sv~w~~~~~~~~~~~ll~~W~~~~~~~ALeL--L~~~f--~d~~Vr~yAv~~L~~~~d~~l~~yL~QLVQaL 515 (940)
T 2wxf_A 440 EALARLLLVTKWNKHEDVAQMLYLLCSWPELPVLSALEL--LDFSF--PDCYVGSFAIKSLRKLTDDELFQYLLQLVQVL 515 (940)
T ss_dssp GGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHH--TSTTC--CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHG
T ss_pred hHHHHHHhccCCCCHHHHHHHHHHHccCCCCCHHHHHHh--cCCcC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 477778888887765444445577777843221000000 00000 12346666667889999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHH--hcchhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHH
Q 000149 1607 CHQNEEIVRLVKHIITSVLR--QYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIK 1684 (2037)
Q Consensus 1607 ~h~~~~v~~~l~~Ii~~v~~--~yPqq~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~~~~~~~~li~~~~~l~~~Li~ 1684 (2037)
.|.+-.-..+..-||.+... .++++.+|.|.+... .+....+...|++.+..... .....+.+| ..+.++|.+
T Consensus 516 kyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~--~~~~~~r~~~ile~~~~~~~--~~~~~l~~q-~~~~~~L~~ 590 (940)
T 2wxf_A 516 KYESYLDCELTKFLLGRALANRKIGHFLFWHLRSEMH--VPSVALRFGLIMEAYCRGST--HHMKVLMKQ-GEALSKLKA 590 (940)
T ss_dssp GGCSSSSCHHHHHHHHHHHHCHHHHHHHHHHHHTTTT--CHHHHHHHHHHHHHHHHHCH--HHHHHHHHH-HHHHHHHHH
T ss_pred hhccccccHHHHHHHHHHHhChHHHHHHHHHheeccc--CchHHHHHHHHHHHHHhhcH--HHHHHHHHH-HHHHHHHHH
Confidence 99753223455555555553 478999999988754 34566778888888765432 122233333 467777777
Q ss_pred HHhccCCccccccchhhhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCCcEEeeec-cceEEecCC
Q 000149 1685 LCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIA-DEAEILSSL 1763 (2037)
Q Consensus 1685 l~~~~~~~~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f~-~~v~V~~S~ 1763 (2037)
++..-.. ..+...-.+....+++...... . ...+|+ .+.|+ .+.++|.+|. +.+.|++|+
T Consensus 591 i~~~ik~-~~~~~~r~k~~~~L~~~l~~~~------~-~~~~~~---------~~lP~--~P~~~I~~~~~~~~~V~~S~ 651 (940)
T 2wxf_A 591 LNDFVKV-SSQKTTKPQTKEMMHMCMRQET------Y-MEALSH---------LQSPL--DPSTLLEEVCVEQCTFMDSK 651 (940)
T ss_dssp HHHHHHH-HTTTSCHHHHHHHHHHHHTSHH------H-HHHHSS---------EEETT--EEEEEECEECGGGCEECSST
T ss_pred HHHHHhh-ccccccHHHHHHHHHHHHhccc------h-hhccCC---------CCCCC--CCceeEEEeccCceEEcccc
Confidence 7743110 0000001111233333321100 0 001111 12222 3568999997 689999999
Q ss_pred CceeEEEEEecC---CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecCCC
Q 000149 1764 QRPKKIVLLGSD---GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840 (2037)
Q Consensus 1764 ~~Prki~i~Gsd---Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~n~ 1840 (2037)
++||+|+++|+| |+.|+||+|++||||||+|+||++++||.+|+++ +++|++++|+|+|+++++||||||+|+
T Consensus 652 ~~P~~l~~~gsD~~~G~~~~~i~K~gDDLRqD~rv~Ql~~lmn~il~~~----~~~L~i~~Y~Vipls~~~GlIE~V~ns 727 (940)
T 2wxf_A 652 MKPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQE----GLDLRMTPYGCLPTGDRTGLIEVVLHS 727 (940)
T ss_dssp TCCEEEEEECTTTGGGGCEEEEEEESSCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCCCCEEEEETTEEEEECCSSE
T ss_pred cCCeEEEEEecCcCCCcceeEEEecCcccchhHHHHHHHHHHHHHHHhC----CCCeEEEeeeEEEecCCCCeEeECCCC
Confidence 999999999999 9999999999999999999999999999999987 489999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCC-chhHHHHHHHhCCChhHHHHHHHHHHHH
Q 000149 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMF-PPVFHKWFLTTFSEPAAWFRARVAYAHT 1919 (2037)
Q Consensus 1841 ~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-ppvl~~~f~~~f~~p~~w~~aR~~Ft~S 1919 (2037)
.|+++|++. .+.... ...+ .++|++||.+.+|+ ..|+++|.+|++|
T Consensus 728 ~tl~~I~~~----~~~~~~----------------------------~~~f~~~~l~~~~~~~~~~-~~~~~a~~~F~~S 774 (940)
T 2wxf_A 728 DTIANIQLN----KSNMAA----------------------------TAAFNKDALLNWLKSKNPG-EALDRAIEEFTLS 774 (940)
T ss_dssp EEHHHHHTC----CSSSTT----------------------------CCSSGGGHHHHHHHHHSCT-THHHHHHHHHHHH
T ss_pred ccHHHHHHh----hccchh----------------------------hhccCchhHHHHHHHhCCH-HHHHHHHHHHHHH
Confidence 999999643 111100 0112 24789999999954 6788999999999
Q ss_pred HHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCC-CCCC-CCCCCcccChhHHh-hcc--cchh-----hH
Q 000149 1920 TAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL-LLEK-PELVPFRLTQVRKS-YGL--CAMH-----FI 1989 (2037)
Q Consensus 1920 lAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~-~l~~-pE~VPFRLT~nmvd-~G~--~g~e-----~~ 1989 (2037)
+|+|||+|||||||||||+|||||+ ||+++|||||++|++++ .+.. ||.||||||+||++ +|. .|.+ |.
T Consensus 775 ~A~~Svv~YILGlgDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~~g~Fr 853 (940)
T 2wxf_A 775 CAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFR 853 (940)
T ss_dssp HHHHHHHHHHHTCCCCCGGGEEEET-TSCEEECCCCCCTTCC---------CCCCCCCHHHHHHHTTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcccEEEec-CCCEEEEeehhhhcccccccCCCCCCCCccCCHHHHHHHcCCCCCCCcchhhHH
Confidence 9999999999999999999999995 99999999999999864 4554 99999999999999 554 2322 45
Q ss_pred HHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1990 VILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1990 ~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
..+..+|.++|+ .|..++++|- ++-+||+..
T Consensus 854 ~~c~~~~~~LR~~~~~ll~ll~lml-~~~lp~~~~ 887 (940)
T 2wxf_A 854 GYCERAYTILRRHGLLFLHLFALMR-AAGLPELSC 887 (940)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHG-GGCCTTSCS
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh-CCCCcccCc
Confidence 556677888888 7777888887 455788874
|
| >2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-49 Score=525.11 Aligned_cols=426 Identities=17% Similarity=0.204 Sum_probs=306.3
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCcccccc---CCCChhhhHHHHHHHHHHHHhhcCCCCchhhHhhHHHHH
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRA---GSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLV 1603 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt~lPQLi 1603 (2037)
.|+..+++|+.+.+.....-+-.+|.-|-.......-+ +.-.+ ..|.+..-+.+..+|...++.++||||
T Consensus 593 ~aL~k~l~sv~w~~~~e~~e~~~lL~~W~~i~p~~ALeLL~~~f~d-------~~VR~yAV~~L~~~~d~~l~~yLpQLV 665 (1092)
T 2y3a_A 593 QSLPKLLLSIKWNKLEDVAQLQALLQIWPKLPPREALELLDFNYPD-------QYVREYAVGCLRQMSDEELSQYLLQLV 665 (1092)
T ss_dssp GGHHHHHHHSCTTCHHHHHHHHHHHHTSCCCCHHHHGGGGSTTCCC-------TTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHccCCCCCHHHHHHhcCccCCC-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47888889998876654445567777783332100000 00011 234455556778899999999999999
Q ss_pred hhccCCChHHHHHHHHHHHHHHH--hcchhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH
Q 000149 1604 SRICHQNEEIVRLVKHIITSVLR--QYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDH 1681 (2037)
Q Consensus 1604 SRI~h~~~~v~~~l~~Ii~~v~~--~yPqq~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~~~~~~~~li~~~~~l~~~ 1681 (2037)
..|.|..-.-..+..-||.+... .+.++.+|.|.+.... +....+...+++.+..... .....+.+| ..+.++
T Consensus 666 QaLkyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~L~~e~~~--~~~~~r~~~lle~~~~~~~--~~~~~l~~Q-~~~~~~ 740 (1092)
T 2y3a_A 666 QVLKYEPFLDCALSRFLLERALDNRRIGQFLFWHLRSEVHT--PAVSVQFGVILEAYCRGSV--GHMKVLSKQ-VEALNK 740 (1092)
T ss_dssp HHHHHCSSSSCHHHHHHHHHHTSCSSHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHTT--TTHHHHHHH-HHHHHH
T ss_pred HHHhcccccccHHHHHHHHHHhhChHHHHHHHHHeeecccC--chHHHHHHHHHHHHHhhcH--HHHHHHHHH-HHHHHH
Confidence 99998754334556666666664 3779999999987653 4456677888888766543 222334444 366777
Q ss_pred HHHHHhccCCccccccchhhhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCCcEEeeec-cceEEe
Q 000149 1682 LIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIA-DEAEIL 1760 (2037)
Q Consensus 1682 Li~l~~~~~~~~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f~-~~v~V~ 1760 (2037)
|.++|..-.. ..+...-.+....+++....... ...+|+ .+.| ..+.++|.+|. +.+.|+
T Consensus 741 L~~is~~ik~-~~~~~~r~k~~e~L~~~l~~~~~-------~~~~~~---------~~lP--~~P~v~I~~~~~~~~~V~ 801 (1092)
T 2y3a_A 741 LKTLNSLIKL-NAVKLSRAKGKEAMHTCLKQSAY-------REALSD---------LQSP--LNPCVILSELYVEKCKYM 801 (1092)
T ss_dssp HHHHHHHHHH-HHHHSCHHHHHHHHHHHHHSTTH-------HHHTSS---------SCCS--SCSSBCCCCCCGGGCEEC
T ss_pred HHHHHHHHhh-ccccccHHHHHHHHHHHhhccch-------hhcCCC---------CCCC--CCCceEEEEEecCceEEe
Confidence 7777643110 00000001112233333211100 001121 1222 34678999997 589999
Q ss_pred cCCCceeEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeEecC
Q 000149 1761 SSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVP 1838 (2037)
Q Consensus 1761 ~S~~~Prki~i~Gsd--Gk~y~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIEwv~ 1838 (2037)
+|+++||+|+|+|+| |+.|+||+|++||||||+|+||++++||.+|+++ +++|++++|+|||+++++||||||+
T Consensus 802 ~S~~~P~rL~~~gsD~~G~~y~~L~K~gDDLRQD~rv~Ql~~lmn~ll~~~----~~~L~i~~Y~Vipls~~~GLIE~V~ 877 (1092)
T 2y3a_A 802 DSKMKPLWLVYSSRAFGEDSVGVIFKNGDDLRQDMLTLQMLRLMDLLWKEA----GLDLRMLPYGCLATGDRSGLIEVVS 877 (1092)
T ss_dssp SSTTCCEEEEEECTTTSSSEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH----SCCCCCCCCCEECCSSSCCEEECCT
T ss_pred ccccCceEEEEEecCCCCceeeEEEecCcccchhHHHHHHHHHHHHHHHhC----CCCeEEecceEEEecCCCCeEeeCC
Confidence 999999999999999 9999999999999999999999999999999987 4899999999999999999999999
Q ss_pred CCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCC-chhHHHHHHHhCCChhHHHHHHHHHH
Q 000149 1839 HTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMF-PPVFHKWFLTTFSEPAAWFRARVAYA 1917 (2037)
Q Consensus 1839 n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-ppvl~~~f~~~f~~p~~w~~aR~~Ft 1917 (2037)
|+.|+++|++. .+.... ...+ +++|++||.+.++ +..|+++|++|+
T Consensus 878 ns~TL~~I~~~----~~~~~~----------------------------~~~f~~~~L~~~~~~~~~-~~~~~~ar~nF~ 924 (1092)
T 2y3a_A 878 TSETIADIQLN----SSNVAA----------------------------TAAFNKDALLNWLKEYNS-GDDLDRAIEEFT 924 (1092)
T ss_dssp TCCBHHHHHSS----SCTTTT----------------------------TSCSSTTHHHHHHHHHCC-THHHHHHHHHHH
T ss_pred CCccHHHHHHh----hccchh----------------------------hhccCchHHHHHHHHhCC-HHHHHHHHHHHH
Confidence 99999999643 111100 0011 3578999999994 467889999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCC-CCCC-CCCCCcccChhHHh-hccc--ch-----h
Q 000149 1918 HTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL-LLEK-PELVPFRLTQVRKS-YGLC--AM-----H 1987 (2037)
Q Consensus 1918 ~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~-~l~~-pE~VPFRLT~nmvd-~G~~--g~-----e 1987 (2037)
+|+|+|||+|||||||||||+||||| .||+++|||||++|++++ .+.. ||.||||||+||++ +|.. |. .
T Consensus 925 ~SlA~ySvv~YILGlGDRH~~NILid-~tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~fg~ 1003 (1092)
T 2y3a_A 925 LSCAGYCVASYVLGIGDRHSDNIMVK-KTGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGR 1003 (1092)
T ss_dssp HHHHHHHHHHHHTTCCCCCTTTEEEC-TTSCEEECCCSCCSSCCCCGGGCCCCCCCCCCCHHHHHHHHTTCSSCSSSTTH
T ss_pred HHHHHHHHHHHHhcCCCCCCccEEEe-cCCCEEEEeehhhhhcCCccCCCCCCCCCccCCHHHHHHHccCCCCCCcchhh
Confidence 99999999999999999999999999 599999999999999875 3444 99999999999999 5532 32 2
Q ss_pred hHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhhh
Q 000149 1988 FIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYSL 2022 (2037)
Q Consensus 1988 ~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~~ 2022 (2037)
|...+..+|.++|+ .|..++++|-. +-+||+...
T Consensus 1004 Fr~~c~~a~~~LR~~~~~Il~ll~lml~-~~Lp~~~~~ 1040 (1092)
T 2y3a_A 1004 FRQCCEDAYLILRRHGNLFITLFALMLT-AGLPELTSV 1040 (1092)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHTST-TCCSSCSSH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhC-CCCccccch
Confidence 46667788888998 77778888874 567888753
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=496.41 Aligned_cols=426 Identities=17% Similarity=0.215 Sum_probs=289.3
Q ss_pred HHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhc-CCCCchhhHhhHHHHHhh
Q 000149 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCL-KDLPAYQWLTVLPQLVSR 1605 (2037)
Q Consensus 1527 ~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~lP~~~wlt~lPQLiSR 1605 (2037)
.|+..+++|+.+.+.....-+-.+|.-|-.......-+- -...+ .+..|.+.--+.+ ..+|....+..+||||..
T Consensus 586 ~aL~k~L~sV~W~~~~e~~e~~~LL~~W~~i~~~~ALeL--L~~~f--~d~~VR~yAV~~L~~~~~ddeLl~YLlQLVQA 661 (1091)
T 3hhm_A 586 EILPKLLLSVKWNSRDEVAQMYCLVKDWPPIKPEQAMEL--LDCNY--PDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQV 661 (1091)
T ss_dssp GGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHT--TSTTC--CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHG
T ss_pred hHHHHHheeCCCCCHHHHHHHHHHHhcCCCCCHHHHHHh--CcccC--CCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 578888999888876544456678888843321000000 00000 0123444444566 778999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHhcc---hhHHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHH
Q 000149 1606 ICHQNEEIVRLVKHIITSVLRQYP---QQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHL 1682 (2037)
Q Consensus 1606 I~h~~~~v~~~l~~Ii~~v~~~yP---qq~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~~~~~~~~li~~~~~l~~~L 1682 (2037)
+.+..-.-..+..-||.|.. ..| ++.+|.|.+.+.... -..+...+++.....+. .....+.+|. .+.+.|
T Consensus 662 LKyE~~~ds~La~FLl~RAl-~n~~igh~lfW~L~~E~~~~~--~~~r~~~lLe~~~~~~~--~~~~~l~rQ~-~~~~~L 735 (1091)
T 3hhm_A 662 LKYEQYLDNLLVRFLLKKAL-TNQRIGHFFFWHLKSEMHNKT--VSQRFGLLLESYCRACG--MYLKHLNRQV-EAMEKL 735 (1091)
T ss_dssp GGGCSSSSCHHHHHHHHHHT-TCHHHHHHHHHHHHTTTTCTT--THHHHHHHHHHHHHHSC--THHHHHHHHH-HHHHHH
T ss_pred HhhccccccHHHHHHHHHHh-hCHHHHHHHHHHeeecccCch--HHHHHHHHHHHHHhhCH--HHHHHHHHHH-HHHHHH
Confidence 98864321233444444433 334 667999988664322 23455667777655432 2223344443 567777
Q ss_pred HHHHhccCCccccccchhhhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCccCCCCcEEeeec-cceEEec
Q 000149 1683 IKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIA-DEAEILS 1761 (2037)
Q Consensus 1683 i~l~~~~~~~~~~~~~ls~~f~~l~~~~~~~li~piq~~l~~~LP~~~~~~~~~~~~~pfp~~~~v~I~~f~-~~v~V~~ 1761 (2037)
.+++..-... .+.-+-...-..++...... .. ...+. .- +.|..+.++|.+|. +.+.|++
T Consensus 736 ~~is~~ik~~-~~~~~~~~k~~~L~~~L~~~---~~-----~~~~~--------~~--~lPl~P~~~I~~i~~~~~~V~~ 796 (1091)
T 3hhm_A 736 INLTDILKQE-KKDETQKVQMKFLVEQMRRP---DF-----MDALQ--------GF--LSPLNPAHQLGNLRLEECRIMS 796 (1091)
T ss_dssp HHHHHHTTST-TCCSCHHHHHHHHHHHHHSH---HH-----HHHSS--------SE--EETTEEEEEECSBCGGGCEECC
T ss_pred HHHHHHHhhh-ccccchHHHHHHHHHHHhcc---ch-----hhccc--------CC--CCCCCcceEEEEEeeceEEEee
Confidence 7776432111 00000000001122111000 00 00000 00 12224668999997 6789999
Q ss_pred CCCceeEEEEEecC--CCee----eEEecCCCcchhhHHHHHHHHHHHHHHccCCcccCccceeccceeeEeCCCceeeE
Q 000149 1762 SLQRPKKIVLLGSD--GIKR----PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVE 1835 (2037)
Q Consensus 1762 S~~~Prki~i~Gsd--Gk~y----~fLvK~~dDlRqD~r~~Ql~~liN~ll~k~~etrrR~L~i~ty~ViPLs~~~GLIE 1835 (2037)
|+++|++|+|+|+| |+.| +||+|++||||||+|+||++++||.+|+++. ++|++++|+|+|+++++||||
T Consensus 797 S~~~P~~L~f~g~D~~G~~y~~~~~~i~K~gDDLRQD~~v~Qli~lmn~il~~~~----~dL~l~~Y~Vip~s~~~GlIE 872 (1091)
T 3hhm_A 797 SAKRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQG----LDLRMLPYGCLSIGDCVGLIE 872 (1091)
T ss_dssp SSSCCEEEEECCCSTTSTTTSCCEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTT----CCCCCCCCCEEEEETTEEEEE
T ss_pred cccCcEEEEEecCCCCCccccccceEEEEcCcchhHHHHHHHHHHHHHHHHHhCC----CCceEeeeeEEEccCCCccee
Confidence 99999999999998 8999 9999999999999999999999999999984 899999999999999999999
Q ss_pred ecCCCccHHHHHHHHHHhcCCCccccCchHHHHHHHHHhcCCChhHHHHHhhcCCC-chhHHHHHHHhCCChhHHHHHHH
Q 000149 1836 WVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMF-PPVFHKWFLTTFSEPAAWFRARV 1914 (2037)
Q Consensus 1836 wv~n~~sl~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-ppvl~~~f~~~f~~p~~w~~aR~ 1914 (2037)
||+|+.|+++|+++. |. . +. ..| +++|++||.+.| ++..|+++|.
T Consensus 873 ~V~ns~Tl~~I~~~~----~~-~----------------~~------------~~f~~~~L~~~f~~~~-~~~~~~~ar~ 918 (1091)
T 3hhm_A 873 VVRNSHTIMQIQCKG----GL-K----------------GA------------LQFNSHTLHQWLKDKN-KGEIYDAAID 918 (1091)
T ss_dssp CCSSEEEHHHHHHSC----TT-T----------------CT------------TCCCTTHHHHHHHTTS-CTTSHHHHHH
T ss_pred ecCCchhHHHHHHhh----Cc-c----------------cc------------cccCchHHHHHHHhcC-ChHHHHHHHH
Confidence 999999999997642 11 0 00 001 357899999999 6667999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCceeEecCCCcEEEeecccccccCCC-C-CCCCCCCcccChhHHh-hc--ccch---
Q 000149 1915 AYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-L-EKPELVPFRLTQVRKS-YG--LCAM--- 1986 (2037)
Q Consensus 1915 ~Ft~SlAv~SmvgYILgLGDRH~eNILid~~tG~vvHIDF~~~f~~g~~-l-~~pE~VPFRLT~nmvd-~G--~~g~--- 1986 (2037)
+|++|+|+|||+|||||||||||+|||||+ ||+++|||||++|+++++ + ..||.||||||+||++ +| ..|.
T Consensus 919 nF~~S~A~ysvv~YiLgigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~~~~~~E~vPFrLT~~mv~vmg~G~~~~e~s 997 (1091)
T 3hhm_A 919 LFTRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKT 997 (1091)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCTTTEEEET-TSCEEECCCCCCSCC------------CCCCCHHHHHHSSCSSSCCSSS
T ss_pred HHHHHhhhhhheEEEEeecCCCCcceEEeC-CCCEEEEeehhhhccCCccCCCCcCCCCceeHHHHHHHHhcCCCCcccc
Confidence 999999999999999999999999999995 999999999999998753 3 4599999999999999 54 4442
Q ss_pred ----hhHHHHHhhHHHhhh---hhhHhhcccCCCCccchhhh
Q 000149 1987 ----HFIVILSPLFFPLKK---ILIYVCLVPQPSSFYSCEYS 2021 (2037)
Q Consensus 1987 ----e~~~~~~~~f~~~~k---~~~~~~~l~~~~s~~~~~~~ 2021 (2037)
.|...+..+|.++|+ .|+.++++|- ++-+||+..
T Consensus 998 ~~fg~Fr~~c~~a~~~LR~~~~~il~LlelM~-~s~lp~~~~ 1038 (1091)
T 3hhm_A 998 REFERFQEMCYKAYLAIRQHANLFINLFSMML-GSGMPELQS 1038 (1091)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHGG-GSCCTTCSS
T ss_pred hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCCccCc
Confidence 245666788899999 7888889884 578999984
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.8e-06 Score=111.70 Aligned_cols=668 Identities=15% Similarity=0.149 Sum_probs=366.1
Q ss_pred hcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccc
Q 000149 12 ALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLL 91 (2037)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (2037)
+|.|+...||..++..+-.|+-..+|.....+...|..........+++.-...||.+.--++.. .+... +
T Consensus 98 ~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~---~~~~~----~-- 168 (852)
T 4fdd_A 98 NIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI---LDSDV----L-- 168 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH---HHHCS----S--
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH---hchhh----h--
Confidence 47888999999999999999887777666666666666666666677776655565554333211 00000 0
Q ss_pred ccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhHHHHHH
Q 000149 92 NVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRV 171 (2037)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~ 171 (2037)
+.....-+..+++++.-+.-+.+...-.-. ..++... .. ...-.+..+-+.+++++- ..+++|+.+++.+
T Consensus 169 ---~~~~~~il~~l~~~l~~~~~~vR~~A~~aL-~~~~~~~---~~--~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 169 ---DRPLNIMIPKFLQFFKHSSPKIRSHAVACV-NQFIISR---TQ--ALMLHIDSFIENLFALAG-DEEPEVRKNVCRA 238 (852)
T ss_dssp ---SSCHHHHHHHHTTTTTCSSHHHHHHHHHHH-HTTTTTT---CH--HHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcc---cH--HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 000111122233333211100000000000 0011000 00 011123344455666554 4577899999999
Q ss_pred HHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHh--
Q 000149 172 IRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAF-- 249 (2037)
Q Consensus 172 l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (2037)
|.++..+.... +..-....+..+-.++.|++..||..++..+..+.+.......+. ..-..++..+...+
T Consensus 239 L~~l~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~-------~~~~~l~p~ll~~l~~ 310 (852)
T 4fdd_A 239 LVMLLEVRMDR-LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV-------RHLPKLIPVLVNGMKY 310 (852)
T ss_dssp HHHHHHHCHHH-HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHT-------TTHHHHHHHHHHHTSC
T ss_pred HHHHHHhCHHH-HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHH-------HHHHHHHHHHHHHcCC
Confidence 99999876532 212122333333345589999999999988887664432111111 01112222222222
Q ss_pred ---------hh-----c-----CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 000149 250 ---------TA-----A-----DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCF 310 (2037)
Q Consensus 250 ---------~~-----~-----~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~ 310 (2037)
.+ . .+..+......+++.+.... +.+++...+-.|.+.|.+++.-+|-.|..-|-.++.
T Consensus 311 ~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~--~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~ 388 (852)
T 4fdd_A 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY--RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 388 (852)
T ss_dssp CHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTT
T ss_pred cHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 11 0 23357778888888885433 567777777778899999999999999999999987
Q ss_pred hhhccCcccccchhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHH-----Hhhcccccchhhhcc-ccChh--
Q 000149 311 FHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELV-----KKMIPAVLPKLVVSQ-QDNDQ-- 382 (2037)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL-----~~~~~~~LP~LVl~~-~~~~~-- 382 (2037)
.... .+.++. +.+.+.+..-+......++.-|...+|- ..+.+ ......++|.|+-.- ..+..
T Consensus 389 ~~~~----~~~~~l----~~~l~~l~~~l~d~~~~Vr~~a~~~l~~-l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr 459 (852)
T 4fdd_A 389 GCMQ----GMIPYL----PELIPHLIQCLSDKKALVRSITCWTLSR-YAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQ 459 (852)
T ss_dssp TTHH----HHGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHH-THHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHH
T ss_pred cchH----HHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHhccchHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 6643 122222 4666777777764444445433333431 11211 122334556665421 11222
Q ss_pred --HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHh---ccccHH---HHHHHHHHHHhhcCC--ChHHHHHhhhHHHHHHH
Q 000149 383 --AVNIINELAKCLNTDMVPLIVTWIPKVLAFAL---HQADER---RLLSALEFYCIQTGS--DNQEIFAAALPALLDEL 452 (2037)
Q Consensus 383 --~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll---~~~~~~---~~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~el 452 (2037)
+...|..+++..+....+ +++.|+..|+ .+.... .+.+++..+....+. ...+.+...+|.++.-+
T Consensus 460 ~~a~~aL~~l~~~~~~~l~~----~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~ 535 (852)
T 4fdd_A 460 EAACSAFATLEEEACTELVP----YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 535 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGGG----GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHhhHh----HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 335666677666654433 4555555444 222222 245666655443332 22345666666666433
Q ss_pred HHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhh------------cCCCChHHHHHHH
Q 000149 453 ICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKM------------LHAEDLSLQKQAL 520 (2037)
Q Consensus 453 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l------------~~~~~~~~k~~~l 520 (2037)
-.+.+.+.+- + .+.+++..+++.+. ..+..|+.+=+-.++..+...+ ...++...+..++
T Consensus 536 -~~l~d~~~~~---~--~~~~~l~~i~~~~g--~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l 607 (852)
T 4fdd_A 536 -NMLKDEDKDL---F--PLLECLSSVATALQ--SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVAL 607 (852)
T ss_dssp -HHSCTTCTTH---H--HHHHHHHHHHHHHG--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHH
T ss_pred -HhcccccHHH---H--HHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHH
Confidence 2233333221 1 23455555554432 2344555543333444444332 1123455677899
Q ss_pred HHHHHHHHHhccccccch--HHHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCC
Q 000149 521 KRIEILIEMIGSHLTTYV--PKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDK 596 (2037)
Q Consensus 521 ~sl~~li~l~g~~v~~~~--pqI~a~L~saL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~ 596 (2037)
..|+.+++-+|+++..+. ++++..|...++. ++++..++.+|..++..+. ..+.+++..++..++..++.
T Consensus 608 ~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~l~~~lp~l~~~l~~-- 681 (852)
T 4fdd_A 608 DLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF----QHVKPCIADFMPILGTNLNP-- 681 (852)
T ss_dssp HHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG----GGTGGGHHHHHHHHHHTCCT--
T ss_pred HHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHcCc--
Confidence 999999999999988876 8899988888864 5789999999999998753 57889999988888888742
Q ss_pred CCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCC--ChhHHHH
Q 000149 597 DNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHE--NLNVRYM 674 (2037)
Q Consensus 597 ~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~e--n~~Vr~~ 674 (2037)
+ ....++.|...+..+...-.+.+ -|.++ ..+..+++.+++. +..|+..
T Consensus 682 ~-~~~v~~~a~~alg~i~~~~~~~~---------~p~~~-------------------~il~~L~~~l~~~~~~~~~~~~ 732 (852)
T 4fdd_A 682 E-FISVCNNATWAIGEISIQMGIEM---------QPYIP-------------------MVLHQLVEIINRPNTPKTLLEN 732 (852)
T ss_dssp T-SHHHHHHHHHHHHHHHHHHGGGG---------GGGTH-------------------HHHHHHHHHHTCSSCCHHHHHH
T ss_pred c-chHHHHHHHHHHHHHHHHhhHhH---------HHHHH-------------------HHHHHHHHHhCCCCCCchHHHH
Confidence 1 22345666666666653321111 12221 1122223333322 3467777
Q ss_pred HHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCccccccccccc
Q 000149 675 VVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQR 754 (2037)
Q Consensus 675 aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~ 754 (2037)
+..-+.++...+.+.+. |-+++++..+++.-.+.. +.+-+..+.++|+.|=..-|+.+.
T Consensus 733 a~~~igrl~~~~~~~~~-----------~~l~~~~~~~~~~l~~~~----d~~e~~~a~~~l~~li~~~p~~~~------ 791 (852)
T 4fdd_A 733 TAITIGRLGYVCPQEVA-----------PMLQQFIRPWCTSLRNIR----DNEEKDSAFRGICTMISVNPSGVI------ 791 (852)
T ss_dssp HHHHHHHHHHHCHHHHG-----------GGHHHHHHHHHHHHHTSC----SSHHHHHHHHHHHHHHHHCGGGTG------
T ss_pred HHHHHHHHHHhCHHHhC-----------ccHHHHHHHHHHHhcccc----ccHHHHHHHHHHHHHHHhChHhHH------
Confidence 77777777766655332 236666776666554321 235677888888887666665322
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHc
Q 000149 755 FKIECSDDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIA 800 (2037)
Q Consensus 755 ~~~~~~~~~F~~~ll~~~Lv~af~s~~dt~~Q~~~AyaiQelL~~~ 800 (2037)
.+|++ ++.|.-+-.+++.+ +.=+++.+|..+
T Consensus 792 -------~~~~~------~~~~~~~~~~~~~~--l~~~~~~~l~~~ 822 (852)
T 4fdd_A 792 -------QDFIF------FCDAVASWINPKDD--LRDMFCKILHGF 822 (852)
T ss_dssp -------GGHHH------HHHHHHTCSSCCHH--HHHHHHHHHHHH
T ss_pred -------HHHHH------HHHHHHhcCCCCHH--HHHHHHHHHHHH
Confidence 13332 34566666666544 334788888753
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-05 Score=108.73 Aligned_cols=593 Identities=12% Similarity=0.094 Sum_probs=303.1
Q ss_pred hhhHHHHHHHhhccc-CccchhHHHHHHHHHHHccCCchhhhhh-hhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh--
Q 000149 145 FSFLLNIYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDVLLKT-RSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-- 220 (2037)
Q Consensus 145 ~~~~~~~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~~~~~-~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-- 220 (2037)
...+-+.+...|-++ .+.+|+.+.+.+|..++.....+..... +...+..|..++.+++..+|.+++..+..+++.
T Consensus 177 ~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~ 256 (861)
T 2bpt_A 177 SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY 256 (861)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344556666776664 4788999999998887765432211000 011223334445778888888888877766521
Q ss_pred ---------hhhhhhcc---ccccccchhhHHHHH------------------------------------HHHHHhhhc
Q 000149 221 ---------TVLSSLFL---DENASSRSNELKLLD------------------------------------VIKLAFTAA 252 (2037)
Q Consensus 221 ---------~~~~~~~~---~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~ 252 (2037)
.++..+.. +.+...+..-..|+. .+...+...
T Consensus 257 ~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~ 336 (861)
T 2bpt_A 257 TFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQ 336 (861)
T ss_dssp GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 12221111 111111111111221 111222211
Q ss_pred ------CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhh
Q 000149 253 ------DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVL 326 (2037)
Q Consensus 253 ------~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~ 326 (2037)
+++.+..+...+++.+.... +.+++...+-.+.+.|.+++.-+|-.|..-+-.++....+ +.+.++.
T Consensus 337 ~~d~~d~~~~~r~~a~~~L~~l~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l-- 409 (861)
T 2bpt_A 337 NEDPEDDDWNVSMSAGACLQLFAQNC--GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK---VQRTYYV-- 409 (861)
T ss_dssp CCC-CCCCCHHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH---HHHHHHH--
T ss_pred ccccccccCcHHHHHHHHHHHHHHHc--cHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH---HHHHHHH--
Confidence 22456666666777764333 4566665666677788888888888888888888643321 1111222
Q ss_pred hhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHH------hhcccccchhhhccccChh----HHHHHHHHHHHcCC
Q 000149 327 ICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK------KMIPAVLPKLVVSQQDNDQ----AVNIINELAKCLNT 396 (2037)
Q Consensus 327 ~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~------~~~~~~LP~LVl~~~~~~~----~~~~i~~ia~~~~~ 396 (2037)
+.+.+.+...+......++.-|...+| ..-+++. ...+.++|.|+-.-+.+.. +...+..+++..+.
T Consensus 410 --~~il~~l~~~l~d~~~~vr~~a~~~l~-~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~ 486 (861)
T 2bpt_A 410 --HQALPSILNLMNDQSLQVKETTAWCIG-RIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE 486 (861)
T ss_dssp --HHHHHHHHHGGGCSCHHHHHHHHHHHH-HHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHcCCCcHHHHHHHHHHHH-HHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhccc
Confidence 345555665554322223332211222 0111110 1122334444432111111 23456666665542
Q ss_pred CchhHHhhhHHHHHHHHh---cc-cc----HHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcC-----CCc--
Q 000149 397 DMVPLIVTWIPKVLAFAL---HQ-AD----ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDG-----GDS-- 461 (2037)
Q Consensus 397 ~~~~l~~~~~~~Ila~ll---~~-~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~-----~~~-- 461 (2037)
.....+..+++.|+..|+ .. +. ...+.++|..+....+.+....+...+|.++..|.-.+.. .+.
T Consensus 487 ~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~ 566 (861)
T 2bpt_A 487 ATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDA 566 (861)
T ss_dssp SSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhH
Confidence 111223345555555444 21 21 3346677777776666555556666667676544322111 111
Q ss_pred hHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchHHH
Q 000149 462 DEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKI 541 (2037)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI 541 (2037)
++.......+..++..+.+.+. ..+..|+.+-+-.++..++..- .+ ..+..++.+++.+.+.+|.++..+.|+|
T Consensus 567 ~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~---~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i 640 (861)
T 2bpt_A 567 QSLQELQSNILTVLAAVIRKSP--SSVEPVADMLMGLFFRLLEKKD---SA-FIEDDVFYAISALAASLGKGFEKYLETF 640 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCG--GGTGGGHHHHHHHHHHHHHSTT---GG-GTHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHccCC---CC-cHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1111111123344444443332 2344555544434444443211 11 4578899999999999999988899999
Q ss_pred HHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHH
Q 000149 542 LVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRA 619 (2037)
Q Consensus 542 ~a~L~saL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~ 619 (2037)
+-.|...++ .++.+..++.+-..+++.+. +.+.+++..++..++..+.... .....+..+...+..++...++
T Consensus 641 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~l~~~l~~~l~~~~-~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 641 SPYLLKALNQVDSPVSITAVGFIADISNSLE----EDFRRYSDAMMNVLAQMISNPN-ARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG----GGGHHHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHhc----hhccchHHHHHHHHHHHhCCcc-ccHhhhHHHHHHHHHHHHHhhh
Confidence 988888885 34567777777777777764 4688888888888888775321 1123567777888777665333
Q ss_pred HHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCH-HHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccC
Q 000149 620 ILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTL-KDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEA 698 (2037)
Q Consensus 620 ~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l-~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~ 698 (2037)
.+..|+..+ +|. +. +......+. .+....+ ...||..++..+..++..-.+. . +.
T Consensus 716 ~~~~~l~~~-----l~~---l~---~~~~~~~~~~d~d~~~~-------~~~vr~~~l~~~~~i~~~l~~~-~-----~~ 771 (861)
T 2bpt_A 716 DFIPYLNDI-----MAL---CV---AAQNTKPENGTLEALDY-------QIKVLEAVLDAYVGIVAGLHDK-P-----EA 771 (861)
T ss_dssp GGHHHHHHH-----HHH---HH---HHHTCCCSSSSHHHHHH-------HHHHHHHHHHHHHHHHHHTTTC-H-----HH
T ss_pred hHHHHHHHH-----HHH---HH---HHHhcCCCCCChHHHHH-------HHHHHHHHHHHHHHHHHHHccC-H-----HH
Confidence 332222111 111 11 111111100 0000001 1245666666666555332210 0 00
Q ss_pred CCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCc-c-CcccccccccccccccccChhhHHHHHHHHHHHH
Q 000149 699 CSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGA-V-DPAKVKGFSCQRFKIECSDDDLIFELIDKHLARA 776 (2037)
Q Consensus 699 ~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGa-l-Dp~r~~~~~~~~~~~~~~~~~F~~~ll~~~Lv~a 776 (2037)
. .+.+..++..|..++.+.+. ..+..++..++.|||.+.. + .+ .+. . .-...|+-. |.+.
T Consensus 772 ~--~~~~~~i~~~l~~~~~d~~~-~~~~~vr~~a~~~l~~l~~~~~g~-~~~--------~-~~~~~~~~~-----ll~~ 833 (861)
T 2bpt_A 772 L--FPYVGTIFQFIAQVAEDPQL-YSEDATSRAAVGLIGDIAAMFPDG-SIK--------Q-FYGQDWVID-----YIKR 833 (861)
T ss_dssp H--GGGHHHHHHHHHHHHHCHHH-HTSHHHHHHHHHHHHHHHHHCTTS-TTG--------G-GTTCHHHHH-----HHHH
T ss_pred H--HHHHHHHHHHHHHHHcCccc-CCcHHHHHHHHHHHHHHHHHcCCc-hHH--------H-HHhcHHHHH-----HHHH
Confidence 1 14677888888777754310 0025899999999998843 3 22 111 0 111133332 4455
Q ss_pred HHc--CCChhhHhHHHHHHHHHHHHc
Q 000149 777 FRA--APDTIIQDSAALAIQELLKIA 800 (2037)
Q Consensus 777 f~s--~~dt~~Q~~~AyaiQelL~~~ 800 (2037)
... ..+.+..+.+++|+.++=+..
T Consensus 834 l~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 834 TRSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHh
Confidence 553 567788999999999886543
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.90 E-value=3.3e-06 Score=120.02 Aligned_cols=519 Identities=13% Similarity=0.169 Sum_probs=277.4
Q ss_pred hcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccc
Q 000149 12 ALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLL 91 (2037)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (2037)
+|.|...+||..|+..+--++-.-++..+..+...|...-.+....|+......||.++-..|.... + +
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~--~-----~---- 124 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS--G-----S---- 124 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------------C----
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc--c-----c----
Confidence 4679999999999999988887666666677777776666677778888877777766544332200 0 0
Q ss_pred ccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhHHHHHH
Q 000149 92 NVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRV 171 (2037)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~ 171 (2037)
++.. .-..++-+.+++.+-+..+.+++-+++.+
T Consensus 125 -------------------------~~~~----------------------~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 125 -------------------------ALAA----------------------NVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp -------------------------CTHH----------------------HHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred -------------------------chHH----------------------HHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 0000 00123445566666544567899999999
Q ss_pred HHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhh
Q 000149 172 IRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA 251 (2037)
Q Consensus 172 l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (2037)
|..++......+. .-....+.++-..+.|++..||.++++.+..+.+.. . ...-..++..+...+..
T Consensus 158 l~~~~~~~~~~l~-~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~------~------~~~~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 158 MADMLSRQGGLLV-NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC------G------NIVFVDLIEHLLSELSK 224 (1230)
T ss_dssp HHHHHHHTCSSCT-TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc------C------HHHHHHHHHHHHHHhcc
Confidence 9999976543321 122445566666679999999999999999986211 0 00112345555555555
Q ss_pred cCChhHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhh
Q 000149 252 ADDPLILETLLESTAELMMAVDVH-SQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNE 330 (2037)
Q Consensus 252 ~~d~~i~eTll~~~~~i~~~~~~~-~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~ 330 (2037)
.+++.+..+.+.+++.|+.++... ...+.-.+-.++..+...++.+|..|..-+..+++...+. +.++. +.
T Consensus 225 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~l----~~ 296 (1230)
T 1u6g_C 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE----VYPHV----ST 296 (1230)
T ss_dssp TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC----CHHHH----HH
T ss_pred CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH----HHHhH----HH
Confidence 555567777888999886644110 0111233445677777888999999999999998865432 11111 12
Q ss_pred hhHHHHHhhcCchHH------------------------------------------HHHHHHHHhCC------------
Q 000149 331 LFDYLSVRLASRPIM------------------------------------------VREFAEAAFGV------------ 356 (2037)
Q Consensus 331 l~~~~~~~l~~~p~~------------------------------------------~~~~~e~ll~~------------ 356 (2037)
+.+.+.+.+...|.. +..+.. +...
T Consensus 297 li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~-l~~~~~~~~~~~~~~l 375 (1230)
T 1u6g_C 297 IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA-VVSTRHEMLPEFYKTV 375 (1230)
T ss_dssp HHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHH-HHTTCCTTHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHH-HHHhchhHHHHHHHHH
Confidence 222222222211110 011110 1110
Q ss_pred -----------------------------------------------ChHHHHHhhcccccchhhhc-cccChh----HH
Q 000149 357 -----------------------------------------------ETEELVKKMIPAVLPKLVVS-QQDNDQ----AV 384 (2037)
Q Consensus 357 -----------------------------------------------~~~~fL~~~~~~~LP~LVl~-~~~~~~----~~ 384 (2037)
+..+.+....+.++|.+.-. +..+.. +.
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~ 455 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence 00111222222222221110 001111 11
Q ss_pred HHHHHHHHHcCCCchhHHhhhHHHHHHHHhc---ccc--HHHHHHHHHHHHhh---cCCC-hHHHHHhhhHHHHHHHHHh
Q 000149 385 NIINELAKCLNTDMVPLIVTWIPKVLAFALH---QAD--ERRLLSALEFYCIQ---TGSD-NQEIFAAALPALLDELICF 455 (2037)
Q Consensus 385 ~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~---~~~--~~~~~~~l~~~~~~---~~~~-~~~~~~~~~~~~l~ell~~ 455 (2037)
..+.++++.....+.+ ++..|+..++. ... .+....++..+... .+.+ ....+...+|.++. .
T Consensus 456 ~~L~~l~~~~~~~l~~----~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~----~ 527 (1230)
T 1u6g_C 456 NMLTELVNVLPGALTQ----HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA----C 527 (1230)
T ss_dssp HHHHHHHHHSTTTTGG----GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHH----H
T ss_pred HHHHHHHHHchhhhHH----HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH----H
Confidence 2233333332222222 22222222221 110 12222222222221 1111 12223333333332 2
Q ss_pred hcCCCchHHhhhhcchhHHHHHHhhhcCC-----CCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHh
Q 000149 456 VDGGDSDEINERLNRVPRVIRKVSTVLTG-----NEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMI 530 (2037)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~ 530 (2037)
+.+.+... + .....++..+.+.+.. +..+..|+..=+=.++..+.. ...+...|..++.++|.|++.+
T Consensus 528 l~d~~~~v---~-~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~---~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 528 VGDPFYKI---T-SEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA---ADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HTCSSHHH---H-HHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC---SSSCHHHHHHHHHHHHHHHHHT
T ss_pred HcccchHH---H-HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHh
Confidence 23322110 0 0112234333333322 234555554333233333421 2234567888999999999999
Q ss_pred ccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHH
Q 000149 531 GSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKIL 610 (2037)
Q Consensus 531 g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il 610 (2037)
|+.+....|+++..|...+..+.-|..+++++....... .+.++.+++..++..+...+... ....+..+...+
T Consensus 601 g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~---~~~~~~~~~~~i~~~L~~~l~~~---~~~~r~~a~~al 674 (1230)
T 1u6g_C 601 GDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSP---LKIDLRPVLGEGVPILASFLRKN---QRALKLGTLSAL 674 (1230)
T ss_dssp GGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCS---SCCCCHHHHHHHHHHHHHHTTSC---CHHHHHHHHHHH
T ss_pred CchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCc---cccchHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHH
Confidence 999999999999999999988777777777777665532 23467888999998888877532 334577788888
Q ss_pred HHHHHHhH-----HHHHhhcccCCCC
Q 000149 611 EDLVLKNR-----AILKQHIHEFPLL 631 (2037)
Q Consensus 611 ~~Li~~n~-----~~L~~~i~~lp~L 631 (2037)
..++..+. +.+...+..+.++
T Consensus 675 ~~l~~~~~~~~~~~~v~~~l~~ll~l 700 (1230)
T 1u6g_C 675 DILIKNYSDSLTAAMIDAVLDELPPL 700 (1230)
T ss_dssp HHHHHHCCTTCCHHHHHHHHTTCGGG
T ss_pred HHHHhcccccCCHHHHHHHHHHHHhh
Confidence 88877653 4454555555444
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-06 Score=115.74 Aligned_cols=545 Identities=12% Similarity=0.169 Sum_probs=297.4
Q ss_pred hhcccchhhhhhhhhhchhhhhhhcCcc---chHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccc-cccc
Q 000149 11 LALRDEFDEVRAEAVISLPVIVMWSGLG---VLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDW-DKNA 86 (2037)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 86 (2037)
-+++|+..+||..|+-.+--++-..+.. .+..+.+.|-.+..++...|++.....||.++=.++.. ..+ -.+-
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~---~~~~l~~l 257 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR---LLPHMHNI 257 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH---HGGGHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH---HHHHHHHH
Confidence 4678899999999998886555432211 12344455555566777889998888888776544311 000 0111
Q ss_pred cccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhc---------
Q 000149 87 CKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLY--------- 157 (2037)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------- 157 (2037)
...+++.... ....+...--.||...|+.....+ . ..--...+-+.+++.+.
T Consensus 258 ~~~l~~~~~~-~~~~vr~~a~e~l~~l~~~~~~~~------~------------~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 258 VEYMLQRTQD-QDENVALEACEFWLTLAEQPICKD------V------------LVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHHHHTTSTTHHH------H------------HTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHccC-CcHHHHHHHHHHHHHHhcchhHHH------H------------HHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 2222222111 112233333345666665432111 0 01123344455555552
Q ss_pred -cc-----------CccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhh
Q 000149 158 -DE-----------SSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSS 225 (2037)
Q Consensus 158 -~~-----------~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~ 225 (2037)
++ .+..|+.+....|.++..+...++. . ..+..+..++.|++-.+|++++.++..+.+...
T Consensus 319 ~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~-~---~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~--- 391 (852)
T 4fdd_A 319 KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELL-P---HILPLLKELLFHHEWVVKESGILVLGAIAEGCM--- 391 (852)
T ss_dssp HC------------CCCCHHHHHHHHHHHHHHHHGGGGH-H---HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH---
T ss_pred cCCcccccccccccccchHHHHHHHHHHHHHHhccHHHH-H---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch---
Confidence 11 3446788888888888877654432 2 244455556689999999999999999762211
Q ss_pred hccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc--ccchhHHHHHHHHHHHhCCCCcchHHHHHH
Q 000149 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD--VHSQHFLFLLILLVEQLDNPHVTVRMNASR 303 (2037)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~--~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~ 303 (2037)
.........++..+...+.+ .++.|..+...++|+++.... .....+.-.+-.|++.|..+++.+|..|..
T Consensus 392 ------~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~ 464 (852)
T 4fdd_A 392 ------QGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 464 (852)
T ss_dssp ------HHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 00111224566666665543 568899999999999865332 123445556667899999899999999999
Q ss_pred HHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcC--chHH------HHHHHHHHhCCC--hHHHHHhhcccccchh
Q 000149 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS--RPIM------VREFAEAAFGVE--TEELVKKMIPAVLPKL 373 (2037)
Q Consensus 304 ~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~--~p~~------~~~~~e~ll~~~--~~~fL~~~~~~~LP~L 373 (2037)
-|.++|+..... +.++. +.+.+.+.+-+.. +..+ +..+++ ..|-. ..+++. .++|.|
T Consensus 465 aL~~l~~~~~~~----l~~~l----~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~-~~~~~~~~~~~~~----~l~p~l 531 (852)
T 4fdd_A 465 AFATLEEEACTE----LVPYL----AYILDTLVFAFSKYQHKNLLILYDAIGTLAD-SVGHHLNKPEYIQ----MLMPPL 531 (852)
T ss_dssp HHHHHHHHHGGG----GGGGH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHGGGGCCHHHHH----HHHHHH
T ss_pred HHHHHHHHhhHh----hHhHH----HHHHHHHHHHHHHhChHHHHHHHHHHHHHHH-HhhhhhccHHHHH----HHHHHH
Confidence 999999876542 23343 3444444443332 1111 122222 12211 133444 345555
Q ss_pred hh----ccccChh---HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc----------------ccHHHHHHHHHH--
Q 000149 374 VV----SQQDNDQ---AVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ----------------ADERRLLSALEF-- 428 (2037)
Q Consensus 374 Vl----~~~~~~~---~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~----------------~~~~~~~~~l~~-- 428 (2037)
+- .+..+.. +.+.+..|++.++....+.+..-++.++..+-.. ++++....++..
T Consensus 532 ~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~ 611 (852)
T 4fdd_A 532 IQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS 611 (852)
T ss_dssp HHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHH
Confidence 41 1111211 3466677888877766555444344333332110 123333323332
Q ss_pred -HHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhh
Q 000149 429 -YCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKM 507 (2037)
Q Consensus 429 -~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l 507 (2037)
+....+.+....+.+ +.++.-++-.+.+.+.+. ++. ....+..+++.. +..+..|+. .++..+...+
T Consensus 612 ~l~~~l~~~~~~~~~~--~~~~~~l~~~l~~~~~~v-r~~---a~~~l~~l~~~~--~~~~~~~l~----~~lp~l~~~l 679 (852)
T 4fdd_A 612 GLAEGLGGNIEQLVAR--SNILTLMYQCMQDKMPEV-RQS---SFALLGDLTKAC--FQHVKPCIA----DFMPILGTNL 679 (852)
T ss_dssp HHHHHHGGGGHHHHHT--CCHHHHHHHHTTCSSHHH-HHH---HHHHHHHHHHHC--GGGTGGGHH----HHHHHHHHTC
T ss_pred HHHHHHhHhHHHHhcC--CcHHHHHHHHhCCCChhH-HHH---HHHHHHHHHHHh--hHHHHHHHH----HHHHHHHHHc
Confidence 333334333333310 122221222233322221 111 122333333221 223444443 3444443333
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHH
Q 000149 508 LHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAA 587 (2037)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~ 587 (2037)
+.++.+.++.++.++|++.+.+|..+.++.+.|+..|..-|+.++.+......=...+-.|...+|+.+.|++++++..
T Consensus 680 -~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~ 758 (852)
T 4fdd_A 680 -NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRP 758 (852)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHH
Confidence 3345677889999999999999999999999999999998887776554443222333333334677788999998888
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHHHHHHhHH
Q 000149 588 LIPFLERDKDNPSVLLNKVVKILEDLVLKNRA 619 (2037)
Q Consensus 588 lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~ 619 (2037)
+...+..-.+. ..+..|.+-|-.||..|..
T Consensus 759 ~~~~l~~~~d~--~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 759 WCTSLRNIRDN--EEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHTSCSS--HHHHHHHHHHHHHHHHCGG
T ss_pred HHHHhcccccc--HHHHHHHHHHHHHHHhChH
Confidence 76666432222 2357788888888888775
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=8.3e-06 Score=99.71 Aligned_cols=369 Identities=13% Similarity=0.106 Sum_probs=215.0
Q ss_pred HHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hhH
Q 000149 1046 LARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQD 1119 (2037)
Q Consensus 1046 La~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~~ 1119 (2037)
+|...++.|.|..|+.+++..++..+. ....+..|..+|...++.|...-.... ...+. ...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~ 72 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 577889999999999999987765321 124567889999999999988777642 22222 223
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
....+...|++++|..+|+++++..|++.+...++-.|+...|+++......+......|+...-+. ....+....|++
T Consensus 73 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~g~~ 151 (388)
T 1w3b_A 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS-DLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHH-HHHHHHHTTSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHccCH
Confidence 4567889999999999999999999999988889999999999999887777766555554332222 233456678999
Q ss_pred hhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhh
Q 000149 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2037)
Q Consensus 1200 d~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~ 1279 (2037)
+.-.+++...-.. .+........+|.++ ...++..+..+..+++-. +.+...+.|...-... ..
T Consensus 152 ~~A~~~~~~al~~------~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~---~~ 215 (388)
T 1w3b_A 152 EEAKACYLKAIET------QPNFAVAWSNLGCVF--NAQGEIWLAIHHFEKAVT-----LDPNFLDAYINLGNVL---KE 215 (388)
T ss_dssp HHHHHHHHHHHHH------CTTCHHHHHHHHHHH--HTTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHH---HT
T ss_pred HHHHHHHHHHHHh------CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHH---HH
Confidence 8887766544221 011122333444433 334555444444333321 1111111111100111 11
Q ss_pred HHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHh--hhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHH
Q 000149 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRL--KYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2037)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL--~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Ak 1357 (2037)
..+.++......... . ..+.... .|...- -.-...+ .+-+-.+++++ . ..+.....|...+.
T Consensus 216 ~~~~~~A~~~~~~al--~--~~p~~~~------~~~~l~~~~~~~g~~--~~A~~~~~~al-~---~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 216 ARIFDRAVAAYLRAL--S--LSPNHAV------VHGNLACVYYEQGLI--DLAIDTYRRAI-E---LQPHFPDAYCNLAN 279 (388)
T ss_dssp TTCTTHHHHHHHHHH--H--HCTTCHH------HHHHHHHHHHHTTCH--HHHHHHHHHHH-H---TCSSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH--h--hCcCCHH------HHHHHHHHHHHcCCH--HHHHHHHHHHH-h---hCCCCHHHHHHHHH
Confidence 111112111111000 0 0000000 011000 0001111 11111222221 1 12233557888888
Q ss_pred HHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCC
Q 000149 1358 LCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435 (2037)
Q Consensus 1358 lARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~ 1435 (2037)
+..+.|+++.|...+.++....+ +.+....+.++...|+.++|+..++++++..| .
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------------------~--- 337 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-------------------E--- 337 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-------------------T---
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------------C---
Confidence 88888888888888887766643 34555677788888888888888887764211 0
Q ss_pred CcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1436 ~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
.+.++..+|.-+...|+ .+++.+.|+++++++|+...+|+.+|..+
T Consensus 338 --------------~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 338 --------------FAAAHSNLASVLQQQGK--LQEALMHYKEAIRISPTFADAYSNMGNTL 383 (388)
T ss_dssp --------------CHHHHHHHHHHHHTTTC--CHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence 13345556666555554 67888888888888888888888888754
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-05 Score=112.58 Aligned_cols=691 Identities=13% Similarity=0.161 Sum_probs=330.8
Q ss_pred HHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHH-hhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000149 7 EILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRL-ESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2037)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2037)
..+--.|.|+...||..|+.++..++...+...+..+...| ..+..+....+++.....+|.++-..|.. ....-..
T Consensus 178 ~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~l~~ 255 (1230)
T 1u6g_C 178 TCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR--IGEYLEK 255 (1230)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG--GTTSCTT
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH--HHHHHHH
Confidence 34445678888899999999999999888765544422222 23333222356666666666665444421 1111111
Q ss_pred cccccccccccccc---ccHHhhhhcccccccCCccccc-ccccccccC----CCccc---ccc----cc---cCCChhh
Q 000149 86 ACKLLLNVEDDILS---QTVDYLLENFWCSKCDTNVVHN-QELSSKIVN----PSDVQ---SKD----LN---FHSDFSF 147 (2037)
Q Consensus 86 ~~~~~~~~~~~~~~---~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~----~~~~~---~~~----~~---~~~~~~~ 147 (2037)
-...++..-+...+ ......+ +++|..|...+... .+.-..++. -+... +.+ .+ .+-+...
T Consensus 256 l~~~ll~~l~d~~~~vR~~a~~~l-~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~ 334 (1230)
T 1u6g_C 256 IIPLVVKFCNVDDDELREYCIQAF-ESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQG 334 (1230)
T ss_dssp HHHHHHHHHSSCCTTTHHHHHHHH-HHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhh
Confidence 22222222111111 1111122 34455565432110 000000000 00000 000 00 0000000
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2037)
...-| . .-+..+.+|+-+....|..+..... +........-+..+...+.|++..||.++..++..++.......
T Consensus 335 ~~~~~-~-~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~-- 409 (1230)
T 1u6g_C 335 SDDEY-S-DDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQ-- 409 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC---
T ss_pred ccccc-c-cccccCHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccc--
Confidence 00000 0 0123456788899999999887543 21111111112333334478999999999999988774321100
Q ss_pred ccccccc------------chhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc---hhHHHHHHHHHHHhCC
Q 000149 228 LDENASS------------RSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS---QHFLFLLILLVEQLDN 292 (2037)
Q Consensus 228 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~---e~~~~~l~~Li~~L~~ 292 (2037)
...++.. ......++..+.+.+. .+++.+++.++..+++++... .+ ..+...+-.++..|..
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~-~~~~~vr~~~~~~L~~l~~~~--~~~l~~~l~~ll~~l~~~L~d 486 (1230)
T 1u6g_C 410 SWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK-EKSVKTRQCCFNMLTELVNVL--PGALTQHIPVLVPGIIFSLND 486 (1230)
T ss_dssp -----------CCCHHHHHHHHTTHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHS--TTTTGGGHHHHHHHHHHHTTC
T ss_pred ccccCccccccccchHHHHHHHhhHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHc--hhhhHHHHHHHHHHHHHHHcC
Confidence 0000000 0011223333444343 456779999999999986642 22 2344455568888888
Q ss_pred CCc--chHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchH--------HHHHHHHHHhCC------
Q 000149 293 PHV--TVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPI--------MVREFAEAAFGV------ 356 (2037)
Q Consensus 293 ~n~--~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~--------~~~~~~e~ll~~------ 356 (2037)
+++ -++..|...+..+++.+... .+.++. +.+.+.+.+.+..+-. .+.++++ .+|-
T Consensus 487 ~~~~~~v~~~a~~~l~~~~~~~~~~---~~~~~l----~~llp~L~~~l~d~~~~v~~~al~~l~~l~~-~~~~~~~~~~ 558 (1230)
T 1u6g_C 487 KSSSSNLKIDALSCLYVILCNHSPQ---VFHPHV----QALVPPVVACVGDPFYKITSEALLVTQQLVK-VIRPLDQPSS 558 (1230)
T ss_dssp SSSCHHHHHHHHHHHHHHHHSSCGG---GGHHHH----TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HHCCSSSCCC
T ss_pred CCCcchHHHHHHHHHHHHHHhCCHH---HHHhHH----HHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HhcCcccccc
Confidence 875 78888888888887655332 222333 4566666665554433 1334443 4454
Q ss_pred -ChHHHHHhhcccccchhhhccccChh----HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHh---ccc-cHHHHHHHHH
Q 000149 357 -ETEELVKKMIPAVLPKLVVSQQDNDQ----AVNIINELAKCLNTDMVPLIVTWIPKVLAFAL---HQA-DERRLLSALE 427 (2037)
Q Consensus 357 -~~~~fL~~~~~~~LP~LVl~~~~~~~----~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll---~~~-~~~~~~~~l~ 427 (2037)
....++..+.+..+++|-.. ..+.. +...+..++...+..+.+ .++.++..|. ..+ .......++.
T Consensus 559 ~~~~~~~~~ll~~ll~~l~~~-d~~~~vr~~a~~~lg~L~~~~g~~~~~----~~~~~l~~L~~~l~~e~~r~~~~~al~ 633 (1230)
T 1u6g_C 559 FDATPYIKDLFTCTIKRLKAA-DIDQEVKERAISCMGQIICNLGDNLGS----DLPNTLQIFLERLKNEITRLTTVKALT 633 (1230)
T ss_dssp CCCHHHHHHHHHHHHHHHSCS-SSCHHHHHHHHHHHHHHHHHTGGGCCT----HHHHHHHHHHHHTTSSSHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCchhhh----hHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 44566666666666665311 12222 235677777776666543 4455554443 222 2344556666
Q ss_pred HHHhhc-CCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhh
Q 000149 428 FYCIQT-GSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRK 506 (2037)
Q Consensus 428 ~~~~~~-~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~ 506 (2037)
.+.... ..+....+..++|.+.. .+...+. .. |. ....++..+..... .... .+++..++..+- .
T Consensus 634 ~i~~~~~~~~~~~~~~~i~~~L~~----~l~~~~~--~~-r~-~a~~al~~l~~~~~-~~~~----~~~v~~~l~~ll-~ 699 (1230)
T 1u6g_C 634 LIAGSPLKIDLRPVLGEGVPILAS----FLRKNQR--AL-KL-GTLSALDILIKNYS-DSLT----AAMIDAVLDELP-P 699 (1230)
T ss_dssp HHTTCSSCCCCHHHHHHHHHHHHH----HTTSCCH--HH-HH-HHHHHHHHHHHHCC-TTCC----HHHHHHHHTTCG-G
T ss_pred HHHhCccccchHHHHHHHHHHHHH----HHHhCCH--HH-HH-HHHHHHHHHHhccc-ccCC----HHHHHHHHHHHH-h
Confidence 554321 23445555555555443 3333322 21 11 12344444443322 1112 344444443321 2
Q ss_pred hcCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCC--cchhhHHHHH
Q 000149 507 MLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSP--SSTKHVISQV 584 (2037)
Q Consensus 507 l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~--~~l~~ll~~i 584 (2037)
+++..|..+...++..+..|++..++.+....+.++..+...+..+.++..++.+-..+++.+...++ ..+..++..
T Consensus 700 ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~- 778 (1230)
T 1u6g_C 700 LISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRM- 778 (1230)
T ss_dssp GSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHH-
T ss_pred hcCcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHH-
Confidence 23446777888899999999987776554444454444444444444555555554445555433222 234444443
Q ss_pred HHHhhhhcccCCC--CchhhHHHHHHHHHHHHHHhH----HHHHhhcccCCCCC-CchhhHHHH-HHHHHh--cCCCC-H
Q 000149 585 FAALIPFLERDKD--NPSVLLNKVVKILEDLVLKNR----AILKQHIHEFPLLP-SIAALTEVN-KAIQEA--RGPMT-L 653 (2037)
Q Consensus 585 ~~~lip~~~~~~~--~~~~~~~~~~~il~~Li~~n~----~~L~~~i~~lp~Lp-~ip~L~~v~-~~l~~~--r~~~~-l 653 (2037)
+..-+..... ........+...+..++.... ..+..++..+-. | ..+...... ..+.+. +..+. .
T Consensus 779 ---l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~g~~~~~~~~ 854 (1230)
T 1u6g_C 779 ---LTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKN-SRSTDSIRLLALLSLGEVGHHIDLSGQ 854 (1230)
T ss_dssp ---HSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTT-TTCCHHHHHHHHHHHHHHHHHSCCCSC
T ss_pred ---HhccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCC-CCccHHHHHHHHHHHHHhcccCCCccc
Confidence 3222211000 011123445566666665432 334444433321 1 111111111 111221 11122 2
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHH----H------------------HHHhccCC-CCchhHHHHHH
Q 000149 654 KDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDV----T------------------ALINGEAC-SDLDVLSTLIS 710 (2037)
Q Consensus 654 ~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l----~------------------~~~~~e~~-~~~~vi~~Lv~ 710 (2037)
.+.+..|.+.+++.+..||..|...|..+...+-+.+ . ..+..... .-.+.+.++..
T Consensus 855 ~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~ 934 (1230)
T 1u6g_C 855 LELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWA 934 (1230)
T ss_dssp THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHH
T ss_pred ccHHHHHHHHhCCCCHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCChhhHHhhHHHHHH
Confidence 3456788899999999999988777777655442211 1 11111111 11245566666
Q ss_pred HHHHHhhhhccccchhhHHHHHHHhhcccCccCcc
Q 000149 711 SLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPA 745 (2037)
Q Consensus 711 sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~ 745 (2037)
.|++.+.+. ++.++..+|+|||.|...||.
T Consensus 935 ~L~~~~~~~-----~~~~r~~~a~~lg~l~~~~~~ 964 (1230)
T 1u6g_C 935 LLLKHCECA-----EEGTRNVVAECLGKLTLIDPE 964 (1230)
T ss_dssp HHTTCCCCS-----STTHHHHHHHHHHHHHHSSGG
T ss_pred HHHHHhcCc-----chhhHHHHHHHHhhhhccChH
Confidence 666655432 246888999999999999883
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.9e-05 Score=104.44 Aligned_cols=472 Identities=12% Similarity=0.084 Sum_probs=258.1
Q ss_pred hhHHHHHHHhhcc------cCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh
Q 000149 146 SFLLNIYFEFLYD------ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ 219 (2037)
Q Consensus 146 ~~~~~~~~~~l~~------~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~ 219 (2037)
.++-+.+++.|-. +.+.+++.++...|..+..+...++ +. ..+..+...+.|++..+|.+++..+..+.+
T Consensus 320 ~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~---~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VP---HVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-HH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh-HH---HHHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence 3445556666643 2345788888888888877765433 22 233444555689999999999999988652
Q ss_pred hhhhhhhccccc-cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHHHhCCCCc
Q 000149 220 DTVLSSLFLDEN-ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDV---HSQHFLFLLILLVEQLDNPHV 295 (2037)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~---~~e~~~~~l~~Li~~L~~~n~ 295 (2037)
+.. ..-......++..+...+.. .++.|+++.+.++++++..... ..+.+...+-.|+..|.++ +
T Consensus 396 ---------~~~~~~~~~~~~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~ 464 (876)
T 1qgr_A 396 ---------GPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-P 464 (876)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-H
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-H
Confidence 110 00001113355555555543 4578999999999999654322 2356666777788888775 8
Q ss_pred chHHHHHHHHHHHHhhhh-------cc---CcccccchhhhhhhhhhHHHHHhhcCc----hH----HH---HHHHHHHh
Q 000149 296 TVRMNASRLIRKSCFFHL-------KG---GCELLVSKAVLICNELFDYLSVRLASR----PI----MV---REFAEAAF 354 (2037)
Q Consensus 296 ~~~~~a~~~i~~la~~~~-------~~---~~~l~~~~~~~~~~~l~~~~~~~l~~~----p~----~~---~~~~e~ll 354 (2037)
.++..|..-|..++.... +. ..+.+.++. +.+.+.+.+-+... +. .. ..++. ..
T Consensus 465 ~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~----~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~-~~ 539 (876)
T 1qgr_A 465 RVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF----ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK-NS 539 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH----HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH----HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHH-HC
Confidence 899999999999887754 10 112233444 34445555444321 11 12 22332 33
Q ss_pred CCChHHHHHhhcccccchhhhc--------cccChh--------HHHHHHHHHHHcC-CCchhHHhhhHHHHHHHHh---
Q 000149 355 GVETEELVKKMIPAVLPKLVVS--------QQDNDQ--------AVNIINELAKCLN-TDMVPLIVTWIPKVLAFAL--- 414 (2037)
Q Consensus 355 ~~~~~~fL~~~~~~~LP~LVl~--------~~~~~~--------~~~~i~~ia~~~~-~~~~~l~~~~~~~Ila~ll--- 414 (2037)
|-....++..+.+.++..+-.. ...|.. +...+..+++.++ ..+.+ +++.|+..++
T Consensus 540 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----~~~~l~~~l~~~l 615 (876)
T 1qgr_A 540 AKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ----ISDVVMASLLRMF 615 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHT----THHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhH----HHHHHHHHHHHHH
Confidence 4444445555544444333321 111111 1234455555444 33433 3444444433
Q ss_pred -ccc----cHHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChh
Q 000149 415 -HQA----DERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLP 489 (2037)
Q Consensus 415 -~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (2037)
... ..+.+..++..+....+......+...+|.++ ..+...+..+.+. + ...++..+.+... +.+
T Consensus 616 ~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~~vr~--~-a~~~l~~l~~~~~--~~~- 685 (876)
T 1qgr_A 616 QSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLG----IGLKNYAEYQVCL--A-AVGLVGDLCRALQ--SNI- 685 (876)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHH----HHHHHCTTHHHHH--H-HHHHHHHHHHHHG--GGG-
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHcCcchHHHHH--H-HHHHHHHHHHHHH--Hhh-
Confidence 221 13445555555544444333222333333333 2333322222211 1 2233333332221 223
Q ss_pred hhhHHHHHHHHHHhhhhhcCC-CChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCC-------------Ccc
Q 000149 490 GFLRNHFVGLLNSIDRKMLHA-EDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE-------------SLQ 555 (2037)
Q Consensus 490 ~fl~~~~LGil~~~~~~l~~~-~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~-------------~L~ 555 (2037)
.+++-.++..+-..+.+. .+...|..++.++|.+++.+|+....++|.|+-.|..++..+ .++
T Consensus 686 ---~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r 762 (876)
T 1qgr_A 686 ---IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELR 762 (876)
T ss_dssp ---HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 334444444433333222 234577889999999999999999899999999999888633 577
Q ss_pred hhhhHHHHHHHHHhccCC------CcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHH-HHHhhcccC
Q 000149 556 CEGLSVLHFFIEQLSRVS------PSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRA-ILKQHIHEF 628 (2037)
Q Consensus 556 ~~~l~~W~~fv~~L~~~~------~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~-~L~~~i~~l 628 (2037)
...+.+|..++..+.... ...+.+++..++..+....... ......++.|...|..|+..-.. .+..++
T Consensus 763 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--- 838 (876)
T 1qgr_A 763 ESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDE-DHTDGVVACAAGLIGDLCTAFGKDVLKLVE--- 838 (876)
T ss_dssp HHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCS-CCCHHHHHHHHHHHHHHHHHHCTHHHHHHH---
T ss_pred HHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhCcHHHHHHH---
Confidence 788999999999876421 2467888888876665544321 10235677888888877654322 222111
Q ss_pred CCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHh-hccCCChhHHHHHHHHHHHH
Q 000149 629 PLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVD-GLNHENLNVRYMVVCELSKL 682 (2037)
Q Consensus 629 p~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~-rl~~en~~Vr~~aL~eL~~~ 682 (2037)
. ...+..+++ .+.+.+..||..|...+..+
T Consensus 839 -------------------~-----~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 839 -------------------A-----RPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp -------------------T-----SHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred -------------------h-----cHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 0 012334444 55677888887776666554
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.4e-05 Score=108.62 Aligned_cols=436 Identities=14% Similarity=0.110 Sum_probs=251.2
Q ss_pred hhHHHHHHHhhcccC------ccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh
Q 000149 146 SFLLNIYFEFLYDES------SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ 219 (2037)
Q Consensus 146 ~~~~~~~~~~l~~~~------~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~ 219 (2037)
..+-+.+++.|-+.. +..++.++...|.++..+...++. ......+...+.+++-.+|++++..+..+.+
T Consensus 323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~----~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL----EPVLEFVEQNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH----HHHHHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence 345555666665422 235778888888888877664432 2344455556689999999999999988651
Q ss_pred hhhhhhhccccc-cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHHHhCCCCc
Q 000149 220 DTVLSSLFLDEN-ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDV---HSQHFLFLLILLVEQLDNPHV 295 (2037)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~---~~e~~~~~l~~Li~~L~~~n~ 295 (2037)
+.. .........++..+...+.. .++.+.++.+.++|+++..... ..+.+.-.+-.|+..|+.+ +
T Consensus 399 ---------~~~~~~~~~~l~~il~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~ 467 (861)
T 2bpt_A 399 ---------GPDKVQRTYYVHQALPSILNLMND-QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-P 467 (861)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-H
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-h
Confidence 110 00011113456666665544 4788999999999998654321 2445666666788888775 8
Q ss_pred chHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcC---chHHH-------HHHHHHHhCCChHHHHHhh
Q 000149 296 TVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS---RPIMV-------REFAEAAFGVETEELVKKM 365 (2037)
Q Consensus 296 ~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~---~p~~~-------~~~~e~ll~~~~~~fL~~~ 365 (2037)
-+|..|..-+.++++......-+.+.++. +.+.+.+.+.+.+ .|.+- ..+++ ..|-....++..+
T Consensus 468 ~v~~~a~~al~~l~~~~~~~~~~~l~~~~----~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~-~~~~~~~~~~~~l 542 (861)
T 2bpt_A 468 KVATNCSWTIINLVEQLAEATPSPIYNFY----PALVDGLIGAANRIDNEFNARASAFSALTTMVE-YATDTVAETSASI 542 (861)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSCGGGGGH----HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH-HCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHH----HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH-HcchhhHHHHHHH
Confidence 89999999998888775410011233333 3555555555542 13321 12222 2332333344444
Q ss_pred cccccchhhhc--------c----ccC----hhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccc---cHHHHHHHH
Q 000149 366 IPAVLPKLVVS--------Q----QDN----DQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQA---DERRLLSAL 426 (2037)
Q Consensus 366 ~~~~LP~LVl~--------~----~~~----~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~---~~~~~~~~l 426 (2037)
.|.++..|--. . ... ..+..++..|++..+..+.+.+..-++.++..+=... ..+.+..++
T Consensus 543 ~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l 622 (861)
T 2bpt_A 543 STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAI 622 (861)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHH
Confidence 34333333211 0 000 0234667777777776665555444444443332221 234455555
Q ss_pred HHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhh
Q 000149 427 EFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRK 506 (2037)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~ 506 (2037)
..+....+.+....+...+|.++. .+...+.+ . +.. ....+..+.+... +. +.+++-.++..+-..
T Consensus 623 ~~l~~~~~~~~~~~l~~i~~~l~~----~l~~~~~~-v-r~~--a~~~l~~l~~~~~--~~----~~~~~~~l~~~l~~~ 688 (861)
T 2bpt_A 623 SALAASLGKGFEKYLETFSPYLLK----ALNQVDSP-V-SIT--AVGFIADISNSLE--ED----FRRYSDAMMNVLAQM 688 (861)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHH----HHHCTTSH-H-HHH--HHHHHHHHHHHTG--GG----GHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH----HhccccHH-H-HHH--HHHHHHHHHHHhc--hh----ccchHHHHHHHHHHH
Confidence 555544444444444444454443 22332222 1 111 2233333333321 22 344444444443333
Q ss_pred hcCC-CChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCC-------------CcchhhhHHHHHHHHHhccC
Q 000149 507 MLHA-EDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE-------------SLQCEGLSVLHFFIEQLSRV 572 (2037)
Q Consensus 507 l~~~-~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~-------------~L~~~~l~~W~~fv~~L~~~ 572 (2037)
+.++ .+...|..++.+++.+++.+|+.+..+.++|+-.|..+++.. .++..++++|..++..+.+.
T Consensus 689 l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~ 768 (861)
T 2bpt_A 689 ISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK 768 (861)
T ss_dssp HHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3333 235678899999999999999999999999999998888632 36788999999999988642
Q ss_pred CCcchhhHHHHHHHHhhhhcccCC-CCchhhHHHHHHHHHHHHHH
Q 000149 573 SPSSTKHVISQVFAALIPFLERDK-DNPSVLLNKVVKILEDLVLK 616 (2037)
Q Consensus 573 ~~~~l~~ll~~i~~~lip~~~~~~-~~~~~~~~~~~~il~~Li~~ 616 (2037)
+..+.+++..++..+........ +....++..|...+..|...
T Consensus 769 -~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~ 812 (861)
T 2bpt_A 769 -PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM 812 (861)
T ss_dssp -HHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence 45688888888888877764210 00234677788888877553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.9e-05 Score=88.48 Aligned_cols=325 Identities=13% Similarity=0.021 Sum_probs=193.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~ 1124 (2037)
.++....+-|.|..|+-+++..+... | +.++...+. ...+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~-----p-----------------------~~~~~~~~~------------a~~~ 47 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGD-----P-----------------------DNYIAYYRR------------ATVF 47 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----T-----------------------TCHHHHHHH------------HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-----c-----------------------ccHHHHHHH------------HHHH
Confidence 57888889999999999999877642 1 011222222 2234
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch---hhhhhHhHHH-----------H
Q 000149 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP---QYKKTWCMQG-----------V 1190 (2037)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p---~~~~~l~~~~-----------~ 1190 (2037)
...|+|++|..+|+++++..|++......+-.|+...|+++......+......| .....+..++ .
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888777777777777777777778887777666665555555 3333332222 4
Q ss_pred HHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhh
Q 000149 1191 QAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRA 1270 (2037)
Q Consensus 1191 EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~ 1270 (2037)
.+....|+|+...+++...-.. .+........+|.+ .+..++..+..+.++.+.. +.+ ... ..
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~~~~-----~~~---~~~-~~ 190 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEV------CVWDAELRELRAEC--FIKEGEPRKAISDLKAASK-----LKS---DNT-EA 190 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHT-----TCS---CCH-HH
T ss_pred HHHHHccCHHHHHHHHHHHHHh------CCCchHHHHHHHHH--HHHCCCHHHHHHHHHHHHH-----hCC---CCH-HH
Confidence 6777889998887776654321 01122233334433 3445665554444433321 111 111 11
Q ss_pred hHHHH-HhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhH
Q 000149 1271 YPFIV-KLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVG 1349 (2037)
Q Consensus 1271 y~~l~-kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~ 1349 (2037)
+-.+- -+....+.+++...+ +.=+..-.++...+..+-.+. ..
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~------------------------~~a~~~~~~~~~~~~~~~~~~------------~~ 234 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEV------------------------RECLKLDQDHKRCFAHYKQVK------------KL 234 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH------------------------HHHHHHCTTCHHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHH------------------------HHHHhhCccchHHHHHHHHHH------------HH
Confidence 11111 111122222222222 111111111211111111111 12
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPN------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
...+..|.+..+.|.++.|...+.++....+.+ +....|.++...|+..+|+..++.+++..|
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----------- 303 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP----------- 303 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-----------
Confidence 334566888999999999999999987765443 234578999999999999999999876311
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
. .+.++..+|..+...|+ .+++...|+++++++|+...++..+++-+..+
T Consensus 304 --------~-----------------~~~~~~~~~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 304 --------D-----------------NVNALKDRAEAYLIEEM--YDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp --------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred --------c-----------------cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 0 13467777877777665 88999999999999999999998887765443
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00019 Score=97.77 Aligned_cols=563 Identities=13% Similarity=0.110 Sum_probs=293.4
Q ss_pred ChhhHHHHHHHhhccc-CccchhHHHHHHHHHHHccCCchhhhhh-hhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-
Q 000149 144 DFSFLLNIYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDVLLKT-RSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD- 220 (2037)
Q Consensus 144 ~~~~~~~~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~~~~~-~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~- 220 (2037)
.+..+-+.+.+.|-++ ++.+|+.+++.+|..++.+...+..... +...+..+..++.+++..||.+++..+..+++.
T Consensus 169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 248 (876)
T 1qgr_A 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (876)
T ss_dssp GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3556666677777665 4789999999999999877443321111 111233334445788889999998888776521
Q ss_pred ----------hhhhhhccc---cccccchhh----------------------------------------HHHHHHHHH
Q 000149 221 ----------TVLSSLFLD---ENASSRSNE----------------------------------------LKLLDVIKL 247 (2037)
Q Consensus 221 ----------~~~~~~~~~---~~~~~~~~~----------------------------------------~~~~~~~~~ 247 (2037)
.++..++.. .+...+..- ..++..+..
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 328 (876)
T 1qgr_A 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (876)
T ss_dssp GGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHH
Confidence 222222211 110100000 111222222
Q ss_pred Hhhh------cCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCccccc
Q 000149 248 AFTA------ADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLV 321 (2037)
Q Consensus 248 ~~~~------~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~ 321 (2037)
.+.. -++..+......+++.+.... +.+.+..++-.+...|.+++.-+|-.|..-+-.++..... +.+.
T Consensus 329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~---~~~~ 403 (876)
T 1qgr_A 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCC--EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP---SQLK 403 (876)
T ss_dssp HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH---HHHH
T ss_pred HhhcccccccccccHHHHHHHHHHHHHHHHC--cHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH---HHHH
Confidence 2221 123557777777777774433 4566665666678888999999999999988888654321 0111
Q ss_pred chhhhhhhhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhh---------cccccchhhhccccCh----hHHHHHH
Q 000149 322 SKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKM---------IPAVLPKLVVSQQDND----QAVNIIN 388 (2037)
Q Consensus 322 ~~~~~~~~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~---------~~~~LP~LVl~~~~~~----~~~~~i~ 388 (2037)
++. +.+.+.+++.+...-..++.-|...+| .|.... .+.++|.|+-.-+.+. .+...|.
T Consensus 404 ~~~----~~~l~~l~~~l~d~~~~vr~~a~~~l~----~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~ 475 (876)
T 1qgr_A 404 PLV----IQAMPTLIELMKDPSVVVRDTAAWTVG----RICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475 (876)
T ss_dssp HHH----HHHHHHHHHHHTCSSHHHHHHHHHHHH----HHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHhCCCCHHHHHHHHHHHH----HHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111 455566666665332333333322222 222221 1223344432211111 1234555
Q ss_pred HHHHHcC-------CC---chhHHhhhHHHHHHHHhc---cc------cHHHHHHHHHHHHhhcCCChHHHHHhhhHHHH
Q 000149 389 ELAKCLN-------TD---MVPLIVTWIPKVLAFALH---QA------DERRLLSALEFYCIQTGSDNQEIFAAALPALL 449 (2037)
Q Consensus 389 ~ia~~~~-------~~---~~~l~~~~~~~Ila~ll~---~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 449 (2037)
.++...+ .. -...+..+++.|+..|+. .. ....+.++|..+....+.+....+...+|.++
T Consensus 476 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 555 (876)
T 1qgr_A 476 SLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIM 555 (876)
T ss_dssp HHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHH
Confidence 5555433 00 011233455555555542 11 12346677776666666666666666666666
Q ss_pred HHHHHhh--cC---CCchHH--hhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHH-HHhhhhhcCCCC-hHHHHHHH
Q 000149 450 DELICFV--DG---GDSDEI--NERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLL-NSIDRKMLHAED-LSLQKQAL 520 (2037)
Q Consensus 450 ~ell~~~--~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil-~~~~~~l~~~~~-~~~k~~~l 520 (2037)
..|--.+ .. ++.|.. ......+...+..+.+.+ +.+.+..|+. .++..+ ..++ +..+ ...+..++
T Consensus 556 ~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~-~l~~~l~~~l~----~~~~~~~v~~~a~ 629 (876)
T 1qgr_A 556 ERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV-QHQDALQISD-VVMASLLRMFQ----STAGSGGVQEDAL 629 (876)
T ss_dssp HHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS-CHHHHHTTHH-HHHHHHHHHC---------CCHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh-ChhhhhHHHH-HHHHHHHHHHH----hccCCCCccHHHH
Confidence 4442211 00 122211 000011223333333221 1123444442 222222 2222 1111 24577899
Q ss_pred HHHHHHHHHhccccccchHHHHHHHHHHhc---CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCC
Q 000149 521 KRIEILIEMIGSHLTTYVPKILVLLMHAIN---KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKD 597 (2037)
Q Consensus 521 ~sl~~li~l~g~~v~~~~pqI~a~L~saL~---~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~ 597 (2037)
..++.+++-+|....++.++++-.|...|. .++++..++.+...+++.+. ..+.+++..++..++..+....
T Consensus 630 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~i~~~l~~~l~~~~- 704 (876)
T 1qgr_A 630 MAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ----SNIIPFCDEVMQLLLENLGNEN- 704 (876)
T ss_dssp HHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHHHHHTCTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHhCCcc-
Confidence 999999999999888888888888887775 45678889999999998875 3688889999999998886421
Q ss_pred CchhhHHHHHHHHHHHHHHhHHHHHhhcccC-------CCCC---CchhhH----HHH--------HHHHHhcCC-----
Q 000149 598 NPSVLLNKVVKILEDLVLKNRAILKQHIHEF-------PLLP---SIAALT----EVN--------KAIQEARGP----- 650 (2037)
Q Consensus 598 ~~~~~~~~~~~il~~Li~~n~~~L~~~i~~l-------p~Lp---~ip~L~----~v~--------~~l~~~r~~----- 650 (2037)
.....+..+...+..+....+..+..++..+ ...+ +-++.. .++ ..++...+.
T Consensus 705 ~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~ 784 (876)
T 1qgr_A 705 VHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVH 784 (876)
T ss_dssp SCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCC
T ss_pred ccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCccccc
Confidence 1123466677777777654322222221111 0000 011111 111 111222221
Q ss_pred ------CCHHHHHHHHHhhc-cCC--ChhHHHHHHHHHHHHHhhcHH-HHHHHHhccCCCCchhHHHHHHHHHH-Hhhhh
Q 000149 651 ------MTLKDQLLAAVDGL-NHE--NLNVRYMVVCELSKLLKLKSE-DVTALINGEACSDLDVLSTLISSLLR-GCAEE 719 (2037)
Q Consensus 651 ------~~l~~~l~~~~~rl-~~e--n~~Vr~~aL~eL~~~L~~~~~-~l~~~~~~e~~~~~~vi~~Lv~sLL~-~c~~~ 719 (2037)
.+....+-.|+..+ .++ +..||..|+.-|..+...-.. .+...+ ...++..|+. ++.+.
T Consensus 785 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~----------~~~~i~~ll~~~l~~~ 854 (876)
T 1qgr_A 785 PDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVE----------ARPMIHELLTEGRRSK 854 (876)
T ss_dssp GGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHH----------TSHHHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHH----------hcHHHHHHHHHHhhcC
Confidence 11223444555444 555 678999898888877654422 222211 1244555555 33322
Q ss_pred ccccchhhHHHHHHHhhcccCccCcc
Q 000149 720 SRTVVGQKLKLVCADCLGALGAVDPA 745 (2037)
Q Consensus 720 ~~t~~~~~I~~lca~CLG~IGalDp~ 745 (2037)
+++++..++.++|.|.-+||+
T Consensus 855 -----~~~~r~~a~~a~~~~~~~~~~ 875 (876)
T 1qgr_A 855 -----TNKAKTLARWATKELRKLKNQ 875 (876)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTC
T ss_pred -----CHhHHHHHHHHHHHHHHhhcC
Confidence 368999999999999877764
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.53 E-value=0.0011 Score=85.80 Aligned_cols=555 Identities=14% Similarity=0.133 Sum_probs=286.8
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccc-hHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccccc
Q 000149 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGV-LTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDK 84 (2037)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (2037)
...+-..|.++..++|..|+..+.-++..-||.. ...+...|.... +..+.|++.++..||-+....|..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~-------- 82 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP-------- 82 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--------
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--------
Confidence 3455567899999999999999988887767642 122333333222 334456666555555332211100
Q ss_pred cccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccch
Q 000149 85 NACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEV 164 (2037)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 164 (2037)
.. ...+-+++..+ ....+.+|
T Consensus 83 --------------------------------~~--------------------------~~~ll~~L~~l-~~~~~~~v 103 (588)
T 1b3u_A 83 --------------------------------EY--------------------------VHCLLPPLESL-ATVEETVV 103 (588)
T ss_dssp --------------------------------GG--------------------------GGGGHHHHHHH-TTSSCHHH
T ss_pred --------------------------------HH--------------------------HHHHHHHHHHH-HhCchHHH
Confidence 00 01133434443 34456789
Q ss_pred hHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHH
Q 000149 165 QLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDV 244 (2037)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (2037)
+-+.+..|..+..+.+.+..... ...-+..+..+++..+|.+++..+..+... .+ ......++..
T Consensus 104 R~~a~~~L~~l~~~~~~~~~~~~---l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~---------~~---~~~~~~l~~~ 168 (588)
T 1b3u_A 104 RDKAVESLRAISHEHSPSDLEAH---FVPLVKRLAGGDWFTSRTSACGLFSVCYPR---------VS---SAVKAELRQY 168 (588)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHT---HHHHHHHHHTCSSHHHHHHHGGGHHHHTTT---------SC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---------cC---HHHHHHHHHH
Confidence 99999999999998775422122 233344455788899999999888875411 11 1123444544
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccch
Q 000149 245 IKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSK 323 (2037)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~ 323 (2037)
+... ..-+|+.|....+.++|.++.. .+.+.. ...+-.|+..+..++..+|..|..-+..++......
T Consensus 169 l~~l-~~d~~~~VR~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-------- 237 (588)
T 1b3u_A 169 FRNL-CSDDTPMVRRAAASKLGEFAKV--LELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-------- 237 (588)
T ss_dssp HHHH-HTCSCHHHHHHHHHHHHHHHHT--SCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--------
T ss_pred HHHH-hCCCCHHHHHHHHHHHHHHHHH--hcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--------
Confidence 4443 3446788999999999998543 244332 222334667778889999999999988887654221
Q ss_pred hhhhhhhhhHHHHHhhcCch-HHHHHHHHHHhCCChHHHHHh-----hcccccchhhhcc-ccChhH----HHHHHHHHH
Q 000149 324 AVLICNELFDYLSVRLASRP-IMVREFAEAAFGVETEELVKK-----MIPAVLPKLVVSQ-QDNDQA----VNIINELAK 392 (2037)
Q Consensus 324 ~~~~~~~l~~~~~~~l~~~p-~~~~~~~e~ll~~~~~~fL~~-----~~~~~LP~LVl~~-~~~~~~----~~~i~~ia~ 392 (2037)
...+.+.+.+. .+...| ..++..|-..+| .+... ..+.++|.|+-.- ..+..+ ...+..++.
T Consensus 238 --~~~~~~~~~l~-~~~~d~~~~vR~~a~~~l~----~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 238 --DLEALVMPTLR-QAAEDKSWRVRYMVADKFT----ELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp --HHHHHTHHHHH-HHHTCSSHHHHHHHHHTHH----HHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHH-HHccCCCHHHHHHHHHHHH----HHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 01122333333 333322 223332221222 11111 1234566665432 222222 244555555
Q ss_pred HcCCCch--hHHhhhHHHHHHHHhccccH---HHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhh
Q 000149 393 CLNTDMV--PLIVTWIPKVLAFALHQADE---RRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINER 467 (2037)
Q Consensus 393 ~~~~~~~--~l~~~~~~~Ila~ll~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~ 467 (2037)
..+.... +.+..-+|.+.. ++..++. ..+..+|..+....+. .......+|.++ . .+.+.+.+ .+.
T Consensus 311 ~~~~~~~~~~~~~~l~p~l~~-~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~-~---~l~d~~~~--Vr~ 381 (588)
T 1b3u_A 311 NLSADCRENVIMSQILPCIKE-LVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFL-A---QLKDECPE--VRL 381 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHH-HHTCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHH-H---HHTCSCHH--HHH
T ss_pred HhChhhhhhHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHH-H---HhCCCchH--HHH
Confidence 5444321 111112222222 2222222 2233333333322221 111223334433 2 33333322 111
Q ss_pred hcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 000149 468 LNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMH 547 (2037)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~s 547 (2037)
. +..++..+.+.. +. ..+.+.++..+..+ ...++...|..++..|+.+.+.+|+. .+.|+++..|..
T Consensus 382 ~--a~~~l~~l~~~~-~~----~~~~~~~lp~l~~~----~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~ 448 (588)
T 1b3u_A 382 N--IISNLDCVNEVI-GI----RQLSQSLLPAIVEL----AEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMA 448 (588)
T ss_dssp H--HHTTCHHHHHHS-CH----HHHHHHHHHHHHHH----HTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHH
T ss_pred H--HHHHHHHHHHhc-CH----HHHHHHHHHHHHHH----hcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHH
Confidence 1 112222222211 11 11223333333221 23345667788999999999999985 345788888888
Q ss_pred HhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhc
Q 000149 548 AINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHI 625 (2037)
Q Consensus 548 aL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i 625 (2037)
.|.. ++.|..++.++..++..+.. + ..+..++..++.+.. +.....+..+...+..+.......
T Consensus 449 ~l~d~~~~Vr~~a~~~l~~l~~~~~~---~---~~~~~llp~l~~~~~---~~~~~~R~~a~~~l~~l~~~~~~~----- 514 (588)
T 1b3u_A 449 WLVDHVYAIREAATSNLKKLVEKFGK---E---WAHATIIPKVLAMSG---DPNYLHRMTTLFCINVLSEVCGQD----- 514 (588)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHCH---H---HHHHHTHHHHHHTTT---CSCHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHhCc---h---hHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhcCHH-----
Confidence 8864 35889999999999888642 1 123334444444333 222344556666665553321110
Q ss_pred ccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhH
Q 000149 626 HEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVL 705 (2037)
Q Consensus 626 ~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi 705 (2037)
. -...-+..+.+.++++++.||..++.-|..+...-..... -
T Consensus 515 ----------------~---------~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-------------~ 556 (588)
T 1b3u_A 515 ----------------I---------TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL-------------Q 556 (588)
T ss_dssp ----------------H---------HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH-------------H
T ss_pred ----------------H---------HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh-------------H
Confidence 0 0123345566778888999999999999887754322110 0
Q ss_pred HHHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000149 706 STLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2037)
Q Consensus 706 ~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2037)
..++..|.....+ .+.+++..+.++|+.|.
T Consensus 557 ~~~~p~l~~l~~d-----~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 557 SEVKPILEKLTQD-----QDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC-----CchhHHHHHHHHHHHhh
Confidence 1222222222222 24689999999998764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00012 Score=94.50 Aligned_cols=151 Identities=9% Similarity=-0.047 Sum_probs=100.8
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-hccC-------
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSL------- 1115 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-r~~~------- 1115 (2037)
..++.+..++|.|.+|+.+++....... ....+..|..+|...++.|....+... ....
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 187 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDLYNR-------------SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNAN 187 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCGGGT-------------CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcccc-------------chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccc
Confidence 4689999999999999999987542210 134677899999999999998888652 1111
Q ss_pred --------------ChhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHH-------------------------
Q 000149 1116 --------------SLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLN------------------------- 1156 (2037)
Q Consensus 1116 --------------~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~------------------------- 1156 (2037)
.....+..|.+.|++++|..+|+++++..|++.+....+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 188 KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp ---CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred cccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 12235567889999999999999999999987665433322
Q ss_pred -------------HHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1157 -------------CLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1157 -------------CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
++.+.|+++......+.+... |.. .......+.+..+.|+++.-.+++..+
T Consensus 268 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKS-SDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cch-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 222345566555555444332 211 222334566778889998877776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.48 E-value=0.00021 Score=88.62 Aligned_cols=326 Identities=12% Similarity=0.050 Sum_probs=185.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~ 1124 (2037)
.++....++|.|..|+.+++..+... |. ....+..+..+|
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~-------~~~~~~~l~~~~---------------------------- 70 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD-----PD-------NYIAYYRRATVF---------------------------- 70 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-------CHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-----Cc-------cHHHHHHHHHHH----------------------------
Confidence 57888899999999999999876532 10 112233344444
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhh---hhHhH-----------HHH
Q 000149 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK---KTWCM-----------QGV 1190 (2037)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~---~~l~~-----------~~~ 1190 (2037)
...|++++|..+|+++++..|++......+-.|+..+|+++......+......|... ..+.. ...
T Consensus 71 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 71 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666555555555566666666555555544443333221 11111 123
Q ss_pred HHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhh
Q 000149 1191 QAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRA 1270 (2037)
Q Consensus 1191 EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~ 1270 (2037)
.+....|+|+...+++...-.. .+........+|.+ ....++..+..+.++.+... .+.....+
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~--- 214 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAEC--FIKEGEPRKAISDLKAASKL-----KNDNTEAF--- 214 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHH--HHHTTCGGGGHHHHHHHHHH-----HCSCHHHH---
T ss_pred HHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHH--HHHCCCHHHHHHHHHHHHHh-----CCCCHHHH---
Confidence 4566788888877766554221 01122233334433 34566776665555544321 11101111
Q ss_pred hHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHH
Q 000149 1271 YPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGN 1350 (2037)
Q Consensus 1271 y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~ 1350 (2037)
+....-+....+.+++...+. .=+....++...+..+-.++ ...
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~------------------------~~~~~~p~~~~~~~~~~~~~------------~~~ 258 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVR------------------------ECLKLDQDHKRCFAHYKQVK------------KLN 258 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH------------------------HHHHHCTTCHHHHHHHHHHH------------HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHH------------------------HHHHhCCChHHHHHHHHHHH------------HHH
Confidence 111111111222222222221 11111111211111111111 123
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQASGAPN------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~~~p~------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
.++..+..+.+.|.++.|...+.++....+.+ +....+.++...|+..+|+..++.++...|
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p------------ 326 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP------------ 326 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------------
Confidence 45677999999999999999999987765432 456678999999999999999999875211
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
..+.++..+|..+...|+ .+++...|+++++++|+...+|..+|......
T Consensus 327 ------------------------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 327 ------------------------DNVNALKDRAEAYLIEEM--YDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred ------------------------ccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 013466777777766665 88999999999999999999999998765443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=7.8e-05 Score=87.73 Aligned_cols=277 Identities=10% Similarity=0.052 Sum_probs=178.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC-C
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG-R 1198 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg-~ 1198 (2037)
.+..+...|+|++|...|+++++..|.+......+..|+..+|+++......+......|.....+. ....+....| +
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~ 106 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF-AVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH-HHHHHHHHSCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH-HHHHHHHHhhhh
Confidence 4455667799999999999999999999888888899999999999988888777666665433333 3346778889 8
Q ss_pred hhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh
Q 000149 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2037)
Q Consensus 1199 Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh 1278 (2037)
|+...+++...-.. .+........+|.++ ...++..+..+.++.+... .+.....+.. .-.-+.
T Consensus 107 ~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~---l~~~~~ 170 (330)
T 3hym_B 107 NEHARRYLSKATTL------EKTYGPAWIAYGHSF--AVESEHDQAMAAYFTAAQL-----MKGCHLPMLY---IGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHTT------CTTCTHHHHHHHHHH--HHHTCHHHHHHHHHHHHHH-----TTTCSHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHh------CCccHHHHHHHHHHH--HHccCHHHHHHHHHHHHHh-----ccccHHHHHH---HHHHHH
Confidence 98777766554321 111223334455444 3445555444444333221 1110011000 000000
Q ss_pred hHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHH
Q 000149 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Akl 1358 (2037)
...+.+++... ++ ++ +.. .+.....|...+.+
T Consensus 171 ~~~~~~~A~~~------------------------~~--------------------~a-l~~---~~~~~~~~~~l~~~ 202 (330)
T 3hym_B 171 LTNNSKLAERF------------------------FS--------------------QA-LSI---APEDPFVMHEVGVV 202 (330)
T ss_dssp HTTCHHHHHHH------------------------HH--------------------HH-HTT---CTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHH------------------------HH--------------------HH-HHh---CCCChHHHHHHHHH
Confidence 11111111111 11 10 110 11225678999999
Q ss_pred HHHcCChHHHHHHHHHHhhc-----------CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1359 CRLAGHYETATRAILEAQAS-----------GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~-----------~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
..+.|+++.|...+.++... ..+.+....|.++...|+.++|+..++++++..+
T Consensus 203 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--------------- 267 (330)
T 3hym_B 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP--------------- 267 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------
T ss_pred HHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc---------------
Confidence 99999999999998887653 2245788899999999999999999999876311
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~ 1499 (2037)
. .+.++..+|......|+ .+++.+.|.++++++|....+|+.+|..+..
T Consensus 268 ----~-----------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 268 ----Q-----------------NASTYSAIGYIHSLMGN--FENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp ----T-----------------CSHHHHHHHHHHHHHTC--HHHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred ----c-----------------chHHHHHHHHHHHHhcc--HHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 1 02356666776666665 7888999999999999999999999887643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00041 Score=82.24 Aligned_cols=306 Identities=12% Similarity=0.082 Sum_probs=190.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
....+...|+|++|..+|+.+++..|++......+-.|+..+|+++......+......|.... .......+.+..|++
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA-ARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcch-HHHHHHHHHHHcCCh
Confidence 3456778999999999999999999999998889999999999999988888776665565433 233445678889999
Q ss_pred hhHHHHhhcccccCccccCCC-CCcchHHHHHH----------HHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHH
Q 000149 1200 DLMDEYLSGADEEGLLCSSSE-SNASFDMDVAK----------ILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYT 1268 (2037)
Q Consensus 1200 d~lee~l~~~~~~gl~~~~~~-~~~~f~~~l~k----------aLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~ 1268 (2037)
+.-.+++...-... +.. ........++. +......++..+..+.++.+... .+
T Consensus 88 ~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~------- 151 (359)
T 3ieg_A 88 DEAEDDFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-----CV------- 151 (359)
T ss_dssp HHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT-------
T ss_pred HHHHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC-------
Confidence 98877766543210 000 01111112221 11222233332222222211110 00
Q ss_pred hhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchh
Q 000149 1269 RAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEV 1348 (2037)
Q Consensus 1269 r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~ 1348 (2037)
....... ...++-....++ .+-+-.++++ +.. .+..
T Consensus 152 ----------------------------------~~~~~~~----~~~~~~~~~~~~--~~A~~~~~~~-~~~---~~~~ 187 (359)
T 3ieg_A 152 ----------------------------------WDAELRE----LRAECFIKEGEP--RKAISDLKAA-SKL---KSDN 187 (359)
T ss_dssp ----------------------------------TCHHHHH----HHHHHHHHTTCH--HHHHHHHHHH-HTT---CSCC
T ss_pred ----------------------------------CchHHHH----HHHHHHHHCCCH--HHHHHHHHHH-HHh---CCCC
Confidence 0000000 000000000010 0111111111 111 1223
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChH--------------HHHHHHHHHHcCCchHHHHHHHHHhhcCCcc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNV--------------HMEKAKLLWSTRRSDGAIAELQQNLLNKPVE 1414 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~--------------~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~ 1414 (2037)
...|...+.+..+.|.++.|...+.++....+... .+..|..+...|+..+|+..++.+++..+
T Consensus 188 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-- 265 (359)
T 3ieg_A 188 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-- 265 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--
Confidence 56899999999999999999999999877654432 23458889999999999999999876321
Q ss_pred cccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHH
Q 000149 1415 VVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMA 1494 (2037)
Q Consensus 1415 ~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la 1494 (2037)
. .......++..+|......|+ .+++++.|.++++.+|....+|+.+|
T Consensus 266 -----------------~-------------~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
T 3ieg_A 266 -----------------S-------------VAEYTVRSKERICHCFSKDEK--PVEAIRICSEVLQMEPDNVNALKDRA 313 (359)
T ss_dssp -----------------S-------------SHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -----------------C-------------chHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 0 111335567777887777665 89999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1495 KYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1495 ~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
..|...- -...|+..|-+++...+++
T Consensus 314 ~~~~~~g----------------------~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 314 EAYLIEE----------------------MYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHTT----------------------CHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHcC----------------------CHHHHHHHHHHHHhcCCCC
Confidence 8764220 1236889999999887664
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00071 Score=87.27 Aligned_cols=394 Identities=10% Similarity=0.036 Sum_probs=218.9
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCC---hh
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS---LQ 1118 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~---l~ 1118 (2037)
..++....+.|.|..|+.+++.-.... | ....+..|..+|...++.+....+.... ...+ ..
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~~~-----p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 154 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLDIT-----G--------NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRY 154 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-----C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHhhC-----C--------CchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHH
Confidence 457788889999999999999876432 1 1245678999999999999888776632 1122 22
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccC----------------CCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhh
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQME----------------PTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK 1182 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~----------------p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~ 1182 (2037)
..+..|.+.|+|++|...|+...... |.+......+..++.+.|+++......+.+....|...
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 34567889999999999998532222 22355667788999999999988777776655444322
Q ss_pred hhHhHHH-------------------------------------HHHHHhcCChhhHHHHhhcccccCccccCCCCCcch
Q 000149 1183 KTWCMQG-------------------------------------VQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASF 1225 (2037)
Q Consensus 1183 ~~l~~~~-------------------------------------~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f 1225 (2037)
..+..++ +.+..+.|+|+.-.+++..+... +.+...
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~ 307 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-------EKSSDL 307 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-------GGCHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-------CchHHH
Confidence 2111111 11122456666666665544321 122222
Q ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChH
Q 000149 1226 DMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDL 1305 (2037)
Q Consensus 1226 ~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~ 1305 (2037)
...++. .....++.++..+..+.+... .+.....+...-....+ ..+.++...++.... +.. +...
T Consensus 308 ~~~l~~--~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~---~~~-~~~~ 373 (597)
T 2xpi_A 308 LLCKAD--TLFVRSRFIDVLAITTKILEI-----DPYNLDVYPLHLASLHE---SGEKNKLYLISNDLV---DRH-PEKA 373 (597)
T ss_dssp HHHHHH--HHHHTTCHHHHHHHHHHHHHH-----CTTCCTTHHHHHHHHHH---HTCHHHHHHHHHHHH---HHC-TTSH
T ss_pred HHHHHH--HHHHhcCHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHH---hCCHHHHHHHHHHHH---hhC-cccH
Confidence 233333 334566666555544443321 11111122221122222 223333333222100 000 0111
Q ss_pred H-HHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CCh
Q 000149 1306 K-FSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APN 1382 (2037)
Q Consensus 1306 ~-~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~ 1382 (2037)
. ...+.... .-..++. +-+-.+++++ . ........|...+.+..+.|+++.|...+.++.... .+.
T Consensus 374 ~~~~~l~~~~-----~~~g~~~--~A~~~~~~~~-~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 442 (597)
T 2xpi_A 374 VTWLAVGIYY-----LCVNKIS--EARRYFSKSS-T---MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442 (597)
T ss_dssp HHHHHHHHHH-----HHTTCHH--HHHHHHHHHH-H---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH
T ss_pred HHHHHHHHHH-----HHhccHH--HHHHHHHHHH-H---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH
Confidence 1 00111111 0011111 1111112211 0 112235678888888888888888888888876654 345
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHH
Q 000149 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2037)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~ 1462 (2037)
.....+..+...|+.++|+..++++++..+ . .+.++..+|..+.
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------------~-----------------~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQ-------------------Y-----------------DPLLLNELGVVAF 486 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-------------------C-----------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------C-----------------ChHHHHHHHHHHH
Confidence 666777888888888888888888765211 0 0234556666666
Q ss_pred HhCCCCHHHHHHHHHHHHHh------ccc-hHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHH
Q 000149 1463 YTGQKQKEDVITLYSRVREL------QPM-WEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKG 1535 (2037)
Q Consensus 1463 ~s~~~~~~~i~~~Y~~A~~l------~~~-weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~s 1535 (2037)
..|+ .+++.+.|+++.+. +|. |..+|+.+|..|-+. | -...|+..|-++
T Consensus 487 ~~g~--~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~--------------g--------~~~~A~~~~~~~ 542 (597)
T 2xpi_A 487 NKSD--MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL--------------K--------MYDAAIDALNQG 542 (597)
T ss_dssp HTTC--HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT--------------T--------CHHHHHHHHHHH
T ss_pred HhCC--HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh--------------c--------CHHHHHHHHHHH
Confidence 6554 78888888888887 454 467788887665322 0 123577777777
Q ss_pred hccCCcc
Q 000149 1536 LHRGHKN 1542 (2037)
Q Consensus 1536 l~~g~~~ 1542 (2037)
+..+++.
T Consensus 543 ~~~~p~~ 549 (597)
T 2xpi_A 543 LLLSTND 549 (597)
T ss_dssp HHHSSCC
T ss_pred HHhCCCC
Confidence 7776654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00049 Score=83.92 Aligned_cols=346 Identities=15% Similarity=0.103 Sum_probs=189.2
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...+-+.|++++|...|+.+++..|++......+-.++...|+++......+......|.....+ .....+....|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~-~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY-SNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHH-HHHHHHHHHCCCHH
Confidence 44566778888888888888888888777666666777777888777666655544445332222 23344566778887
Q ss_pred hHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhhhH
Q 000149 1201 LMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLL 1280 (2037)
Q Consensus 1201 ~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh~L 1280 (2037)
.-.++....-.. .+........+|.++ ...++.++..+..+.+... . +......+..-.-+..+
T Consensus 85 ~A~~~~~~al~~------~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~-----~---p~~~~~~~~l~~~~~~~ 148 (388)
T 1w3b_A 85 EAIEHYRHALRL------KPDFIDGYINLAAAL--VAAGDMEGAVQAYVSALQY-----N---PDLYCVRSDLGNLLKAL 148 (388)
T ss_dssp HHHHHHHHHHHH------CTTCHHHHHHHHHHH--HHHSCSSHHHHHHHHHHHH-----C---TTCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc------CcchHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHh-----C---CCcHHHHHHHHHHHHHc
Confidence 776665543211 011122233444444 3345555544444333211 0 11111011111111122
Q ss_pred HHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHH
Q 000149 1281 QELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCR 1360 (2037)
Q Consensus 1281 ~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklAR 1360 (2037)
.+.++.......... .. +... ..|...-......=+..+-+-.+++++ . +++.....|...+.+..
T Consensus 149 g~~~~A~~~~~~al~-~~---p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al-~---~~p~~~~~~~~lg~~~~ 214 (388)
T 1w3b_A 149 GRLEEAKACYLKAIE-TQ---PNFA------VAWSNLGCVFNAQGEIWLAIHHFEKAV-T---LDPNFLDAYINLGNVLK 214 (388)
T ss_dssp SCHHHHHHHHHHHHH-HC---TTCH------HHHHHHHHHHHTTTCHHHHHHHHHHHH-H---HCTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH-hC---CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH-h---cCCCcHHHHHHHHHHHH
Confidence 233333332211000 00 0000 011111110000001111111222221 1 11234567899999999
Q ss_pred HcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcc
Q 000149 1361 LAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVL 1438 (2037)
Q Consensus 1361 Kag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 1438 (2037)
+.|.++.|...+.++....+ +.+....+.+++..|+.++|+..++++++..| .
T Consensus 215 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------------------~------ 269 (388)
T 1w3b_A 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-------------------H------ 269 (388)
T ss_dssp TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-------------------S------
T ss_pred HcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------C------
Confidence 99999999999888876654 34566778889999999999999998876311 0
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcch
Q 000149 1439 SNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSE 1518 (2037)
Q Consensus 1439 ~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~ 1518 (2037)
.+.++..+|..+...|+ .+++++.|.++++++|....+|+.+|..+.+. |
T Consensus 270 -----------~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------g--- 319 (388)
T 1w3b_A 270 -----------FPDAYCNLANALKEKGS--VAEAEDCYNTALRLCPTHADSLNNLANIKREQ--------------G--- 319 (388)
T ss_dssp -----------CHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--------------T---
T ss_pred -----------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc--------------C---
Confidence 02356667777766665 78889999999999998888888888665311 1
Q ss_pred hhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcC
Q 000149 1519 KRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFG 1558 (2037)
Q Consensus 1519 ~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g 1558 (2037)
-...|+..|-+++...+++. .....+-.++...|
T Consensus 320 -----~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 320 -----NIEEAVRLYRKALEVFPEFA-AAHSNLASVLQQQG 353 (388)
T ss_dssp -----CHHHHHHHHHHHTTSCTTCH-HHHHHHHHHHHTTT
T ss_pred -----CHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHcC
Confidence 12357888888887766542 23334444444444
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0003 Score=90.90 Aligned_cols=479 Identities=12% Similarity=0.082 Sum_probs=248.2
Q ss_pred cchhhhhhhhhhchhhhhhhc-CccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccccc
Q 000149 15 DEFDEVRAEAVISLPVIVMWS-GLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLLNV 93 (2037)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (2037)
|+.++||.+++..+.-++..- |+.....++..|+.+..++...|++....+||-+.-..+.. ...+
T Consensus 59 d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~-----~~~~-------- 125 (588)
T 1b3u_A 59 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS-----DLEA-------- 125 (588)
T ss_dssp CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH-----HHHH--------
T ss_pred CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH-----HHHH--------
Confidence 778899999998888776553 45556667777887877778899999888888876544321 0000
Q ss_pred ccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhHHHHHHHH
Q 000149 94 EDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIR 173 (2037)
Q Consensus 94 ~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~ 173 (2037)
.+..++..+. .-+...+. +.-..++. .+. ..++ ...-..+.+++.+++ ...+.+|+.++...|.
T Consensus 126 -------~l~~~l~~l~--~~~~~~~R--~~a~~~l~--~~~-~~~~-~~~~~~l~~~l~~l~-~d~~~~VR~~a~~~l~ 189 (588)
T 1b3u_A 126 -------HFVPLVKRLA--GGDWFTSR--TSACGLFS--VCY-PRVS-SAVKAELRQYFRNLC-SDDTPMVRRAAASKLG 189 (588)
T ss_dssp -------THHHHHHHHH--TCSSHHHH--HHHGGGHH--HHT-TTSC-HHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHh--cCCCcHHH--HHHHHHHH--HHH-HhcC-HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 0011111100 00000000 00000000 000 0000 001245677666665 4568899999999999
Q ss_pred HHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcC
Q 000149 174 RILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAAD 253 (2037)
Q Consensus 174 ~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (2037)
.+..+...+... ...+..+..++.|++..||.+++..+..+.+. +. .......++..+... ..-+
T Consensus 190 ~l~~~~~~~~~~---~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~------~~-----~~~~~~~~~~~l~~~-~~d~ 254 (588)
T 1b3u_A 190 EFAKVLELDNVK---SEIIPMFSNLASDEQDSVRLLAVEACVNIAQL------LP-----QEDLEALVMPTLRQA-AEDK 254 (588)
T ss_dssp HHHHTSCHHHHH---HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH------SC-----HHHHHHHTHHHHHHH-HTCS
T ss_pred HHHHHhcHHhHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh------CC-----HHHHHHHHHHHHHHH-ccCC
Confidence 999987754221 22334555666999999999999999886521 01 011123344444443 3456
Q ss_pred ChhHHHHHHHHHHHHHhhhcccchhHH-HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhh
Q 000149 254 DPLILETLLESTAELMMAVDVHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELF 332 (2037)
Q Consensus 254 d~~i~eTll~~~~~i~~~~~~~~e~~~-~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~ 332 (2037)
++.+..+...++|.|+... +.+.+. ..+-.|+..|..+++-||..|..-+-.++....... ......+.+.
T Consensus 255 ~~~vR~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~------~~~~~~~~l~ 326 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAV--GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC------RENVIMSQIL 326 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHH--CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT------HHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHh--CcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh------hhhHHHHHHH
Confidence 7889999999999996543 334321 223346677788999999999999988877653210 0001124555
Q ss_pred HHHHHhhcCchHHHHHHHHHHhCCChHHHH--Hhhcccccchhhhc-cccChhHH----HHHHHHHHHcCCCchhHHhhh
Q 000149 333 DYLSVRLASRPIMVREFAEAAFGVETEELV--KKMIPAVLPKLVVS-QQDNDQAV----NIINELAKCLNTDMVPLIVTW 405 (2037)
Q Consensus 333 ~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL--~~~~~~~LP~LVl~-~~~~~~~~----~~i~~ia~~~~~~~~~l~~~~ 405 (2037)
+++.+.+......++.-+-..+|- .-..+ ....++++|.|+-. +..+..++ ..+..+++..+.. .+...-
T Consensus 327 p~l~~~l~d~~~~vR~~a~~~l~~-l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~ 403 (588)
T 1b3u_A 327 PCIKELVSDANQHVKSALASVIMG-LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSL 403 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHTTGGG-GHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-HHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHH
Confidence 555554443323333332212221 00000 01234566665532 22221211 1222222222211 011112
Q ss_pred HHHHHHHHhcccc---HHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhc
Q 000149 406 IPKVLAFALHQAD---ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVL 482 (2037)
Q Consensus 406 ~~~Ila~ll~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (2037)
+|.+.. ++.... ...+..+|..+....+.+. + .+.++.-++..+.+.+.. .+.. ...++..+.+..
T Consensus 404 lp~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~---~~~l~~~l~~~l~d~~~~--Vr~~--a~~~l~~l~~~~ 472 (588)
T 1b3u_A 404 LPAIVE-LAEDAKWRVRLAIIEYMPLLAGQLGVEF---F---DEKLNSLCMAWLVDHVYA--IREA--ATSNLKKLVEKF 472 (588)
T ss_dssp HHHHHH-HHTCSSHHHHHHHHHHHHHHHHHHCGGG---C---CHHHHHHHHHGGGCSSHH--HHHH--HHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCCchHHHHHHHHHHHHHHHcCHHH---H---HHHHHHHHHHHhcCCcHH--HHHH--HHHHHHHHHHHh
Confidence 233332 222222 2234445544443333211 1 122332233344444332 2211 223333333322
Q ss_pred CCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC--CCcchhhhH
Q 000149 483 TGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINK--ESLQCEGLS 560 (2037)
Q Consensus 483 ~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~--~~L~~~~l~ 560 (2037)
. + .|..+.++-.+.. +...++...|..++.+++.+.+.+|... +.++++-.|...+.. +++|..+++
T Consensus 473 ~-~----~~~~~~llp~l~~----~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~ 541 (588)
T 1b3u_A 473 G-K----EWAHATIIPKVLA----MSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAK 541 (588)
T ss_dssp C-H----HHHHHHTHHHHHH----TTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHH
T ss_pred C-c----hhHHHHHHHHHHH----HhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHH
Confidence 1 1 2333444443332 2334456778889999999999998743 667788788878854 568888999
Q ss_pred HHHHHHHHhc
Q 000149 561 VLHFFIEQLS 570 (2037)
Q Consensus 561 ~W~~fv~~L~ 570 (2037)
++..+...+.
T Consensus 542 ~l~~l~~~~~ 551 (588)
T 1b3u_A 542 SLQKIGPILD 551 (588)
T ss_dssp HHHHHGGGSC
T ss_pred HHHHHHHHhc
Confidence 9988887763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00079 Score=84.56 Aligned_cols=262 Identities=10% Similarity=0.014 Sum_probs=154.8
Q ss_pred hcCHHHHHHHHHHHHc-----c--CCCc-------hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHH
Q 000149 1127 SGNWAEVFTSCEQALQ-----M--EPTS-------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQA 1192 (2037)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq-----~--~p~~-------~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EA 1192 (2037)
.|++++|..+|+++++ . .|++ ......+-.|+...|+++......+......|. .........+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 7888888888888877 4 3333 334455667778888888877777665555554 3333344566
Q ss_pred HHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhH
Q 000149 1193 AWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYP 1272 (2037)
Q Consensus 1193 AWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~ 1272 (2037)
.+..|+|+...+++...-.. .+........+|.++ ...++..+..+.++.+... .+.... ++-
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~-----~~~~~~----~~~ 342 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKL------DSNNSSVYYHRGQMN--FILQNYDQAGKDFDKAKEL-----DPENIF----PYI 342 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTT------CTTCTHHHHHHHHHH--HHTTCTTHHHHHHHHHHHT-----CSSCSH----HHH
T ss_pred HHHCCCHHHHHHHHHHHhhc------CcCCHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHh-----ChhhHH----HHH
Confidence 77888887766655543221 011122233344333 3455555544444333211 110000 000
Q ss_pred HHH-HhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHH
Q 000149 1273 FIV-KLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNC 1351 (2037)
Q Consensus 1273 ~l~-kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~ 1351 (2037)
.+- -+....+.+++.. .++. .+. ..+ .....
T Consensus 343 ~l~~~~~~~~~~~~A~~------------------------~~~~--------------~~~-----~~~-----~~~~~ 374 (514)
T 2gw1_A 343 QLACLAYRENKFDDCET------------------------LFSE--------------AKR-----KFP-----EAPEV 374 (514)
T ss_dssp HHHHHTTTTTCHHHHHH------------------------HHHH--------------HHH-----HST-----TCSHH
T ss_pred HHHHHHHHcCCHHHHHH------------------------HHHH--------------HHH-----Hcc-----cCHHH
Confidence 000 0001111111111 1110 000 011 12357
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--CCh------HHHHHHHHHHH---cCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1352 WLQYAKLCRLAGHYETATRAILEAQASG--APN------VHMEKAKLLWS---TRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1352 WL~~AklARKag~~~~A~~aLl~a~~~~--~p~------~~iE~AKLLW~---~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
|...+.+..+.|+++.|...+.++.... .+. +....|.++.. .|+..+|+..++.++...+
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------- 446 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-------- 446 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--------
Confidence 8899999999999999999988876543 222 78889999999 9999999999999876311
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~l 1493 (2037)
. .+.++..+|..+...|+ .+++...|+++++++|+....+..+
T Consensus 447 -----------~-----------------~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 447 -----------R-----------------SEQAKIGLAQMKLQQED--IDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp -----------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred -----------c-----------------cHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhccccHHHHHHH
Confidence 0 13456667776666665 7889999999999999988887766
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.14 E-value=0.0011 Score=81.93 Aligned_cols=303 Identities=12% Similarity=0.074 Sum_probs=186.0
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
+..+...|+|++|..+|+++++..|++......+-.|+..+|+++......+......|.... .......+....|+++
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA-ARLQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHcCCHH
Confidence 445778999999999999999999999988889999999999999888887776655554322 2233456778899998
Q ss_pred hHHHHhhcccccCccccCCCCCc---chHHHHHH----------HHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhH
Q 000149 1201 LMDEYLSGADEEGLLCSSSESNA---SFDMDVAK----------ILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSY 1267 (2037)
Q Consensus 1201 ~lee~l~~~~~~gl~~~~~~~~~---~f~~~l~k----------aLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy 1267 (2037)
.-.+++...-... +... .....++. +......++..+..+.++.+... .+
T Consensus 112 ~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~------ 174 (450)
T 2y4t_A 112 EAEDDFKKVLKSN------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-----CV------ 174 (450)
T ss_dssp HHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CT------
T ss_pred HHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC------
Confidence 8877766543210 0111 11111111 11112222222222222111100 00
Q ss_pred HhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCch
Q 000149 1268 TRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAE 1347 (2037)
Q Consensus 1268 ~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~ 1347 (2037)
.........-..-.+.......+...+..+.. . ..
T Consensus 175 -----------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-----~~ 209 (450)
T 2y4t_A 175 -----------------------------------WDAELRELRAECFIKEGEPRKAISDLKAASKL-----K-----ND 209 (450)
T ss_dssp -----------------------------------TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-----H-----CS
T ss_pred -----------------------------------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----C-----CC
Confidence 00000000000000000011111111111111 1 12
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHH--------------HHHHHHHHHcCCchHHHHHHHHHhhcCCc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVH--------------MEKAKLLWSTRRSDGAIAELQQNLLNKPV 1413 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~--------------iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~ 1413 (2037)
....|...+.+..+.|+++.|...+.++....+.... ++.+..+...|+..+|+..++++++..|
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p- 288 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP- 288 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-
Confidence 2567999999999999999999999998776544322 3348899999999999999999876321
Q ss_pred ccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000149 1414 EVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2037)
Q Consensus 1414 ~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~l 1493 (2037)
. .....+.++..+|..+...|+ .++++..|+++++++|....+|+.+
T Consensus 289 ------------------~-------------~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 289 ------------------S-------------IAEYTVRSKERICHCFSKDEK--PVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp ------------------S-------------SHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ------------------c-------------chHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcccHHHHHHH
Confidence 1 111235567777877766665 8899999999999999999999999
Q ss_pred HhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1494 AKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1494 a~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
|..|... | -...|+..|-+++...+++
T Consensus 336 ~~~~~~~--------------~--------~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 336 AEAYLIE--------------E--------MYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHT--------------T--------CHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHh--------------c--------CHHHHHHHHHHHHHhCcch
Confidence 9876422 0 1236888888888877664
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0028 Score=79.47 Aligned_cols=379 Identities=8% Similarity=0.026 Sum_probs=195.4
Q ss_pred hHHHHHHHHhhCCChHHHHHHHHH--hccCC---hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc
Q 000149 1088 DVSFLMEIYSFLDEPDGLSGLARL--HKSLS---LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC 1162 (2037)
Q Consensus 1088 ~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~---l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lg 1162 (2037)
.+-.+...|...++.+........ ...++ ....+..+.+.|+|++|..+|+++++..|++......+-.|+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 456777888889999888777652 22233 2234556788999999999999999999998888888889999999
Q ss_pred ChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHH--------------------------------------
Q 000149 1163 HLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDE-------------------------------------- 1204 (2037)
Q Consensus 1163 q~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee-------------------------------------- 1204 (2037)
+++......+......|...... ...++............+
T Consensus 88 ~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGDFNDASI-EPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSSSCCGGGT-HHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99987777666554444221111 111111111111111111
Q ss_pred HhhcccccCccccCCCCCcchHHHHHHHHHHHH---cCCcchHHHHHHHHHHHHhhhh--hhhc---hhhHHhhh-HHHH
Q 000149 1205 YLSGADEEGLLCSSSESNASFDMDVAKILQAMM---KKDHFSVSDKIGVSKQVLIAPL--AAAG---MDSYTRAY-PFIV 1275 (2037)
Q Consensus 1205 ~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~---~~d~~~f~~~I~~aR~~l~~~L--~a~~---~eSy~r~y-~~l~ 1275 (2037)
++......... ............+..++..+. .++..+..+..+.+....-..+ .+.. .......+ ..-.
T Consensus 167 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 167 FFGIFKPELTF-ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHTTSCCCCCC-SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHH-HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 11111000000 000001113333444444444 3333333333332222100001 0000 00111111 1111
Q ss_pred HhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhh--ccCChhhhhhhHHHHHhhcCCCCCCchhHHHHH
Q 000149 1276 KLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKY--TQPSLWAREPLLAFRRMVFGASGLGAEVGNCWL 1353 (2037)
Q Consensus 1276 kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~--~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL 1353 (2037)
-+....+.+++..++.... .. .+. . ..|...-.. ...++ .+-+-.++++ +. ........|.
T Consensus 246 ~~~~~~~~~~A~~~~~~~l--~~--~~~-~------~~~~~l~~~~~~~~~~--~~A~~~~~~~-~~---~~~~~~~~~~ 308 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAI--EL--FPR-V------NSYIYMALIMADRNDS--TEYYNYFDKA-LK---LDSNNSSVYY 308 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHH--HH--CCC-H------HHHHHHHHHHHTSSCC--TTGGGHHHHH-HT---TCTTCTHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH--hh--Ccc-H------HHHHHHHHHHHHCCCH--HHHHHHHHHH-hh---cCcCCHHHHH
Confidence 1222233344333332100 00 001 1 111111110 11111 1111112221 11 1223356788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCC
Q 000149 1354 QYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVP 1431 (2037)
Q Consensus 1354 ~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~ 1431 (2037)
..+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..+
T Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------------------- 369 (514)
T 2gw1_A 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP------------------- 369 (514)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-------------------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-------------------
Confidence 99999999999999999988887664 456777888888999999999999988875321
Q ss_pred CCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH------HHHHHHhhhHHHHHHHH
Q 000149 1432 LNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK------GYFYMAKYCDDVLVDAR 1505 (2037)
Q Consensus 1432 ~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK------~~~~la~y~d~l~~~~~ 1505 (2037)
.+ +.++..+|......|+ .+++.+.|.++++..|.... +|+.+|..|-..+
T Consensus 370 ~~-----------------~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 426 (514)
T 2gw1_A 370 EA-----------------PEVPNFFAEILTDKND--FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP---- 426 (514)
T ss_dssp TC-----------------SHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC----
T ss_pred cC-----------------HHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhh----
Confidence 10 2245556666666554 78888999999999887754 8888887653200
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1506 ~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
..| -...|+..|-+++...+..
T Consensus 427 -------~~~--------~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 427 -------TVE--------NFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp -------CTT--------HHHHHHHHHHHHHHHCTTC
T ss_pred -------hcC--------CHHHHHHHHHHHHHhCccc
Confidence 000 1235777777777766554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0018 Score=82.05 Aligned_cols=139 Identities=16% Similarity=0.088 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
..|...+.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..+..
T Consensus 345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------- 411 (537)
T 3fp2_A 345 YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ------------- 411 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc-------------
Confidence 568889999999999999999999987664 45677888999999999999999999987632110
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHH----------HHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLY----------SRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~----------akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
+... ... ......|.++... |+ .++++..|+++++.+|....+|+.+|..|
T Consensus 412 ------~~~~---~~~-~~~~~~a~~~~~~~~~~~~~~~~~~---------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 412 ------EKIH---VGI-GPLIGKATILARQSSQDPTQLDEEK---------FNAAIKLLTKACELDPRSEQAKIGLAQLK 472 (537)
T ss_dssp ------SSCS---STT-HHHHHHHHHHHHHHTC----CCHHH---------HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ------hhhH---HHH-HHHHHHHHHHHHHhhccchhhhHhH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 0000 000 0001123333333 33 56788999999999999999999999876
Q ss_pred HHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1498 DDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1498 d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
.+.- -...|+..|-+++...+..
T Consensus 473 ~~~g----------------------~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 473 LQME----------------------KIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHTT----------------------CHHHHHHHHHHHHHHC--C
T ss_pred HHhc----------------------cHHHHHHHHHHHHHhCCCc
Confidence 4221 0135888888888877654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0035 Score=79.35 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
....|...+.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..|
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------------- 375 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP------------- 375 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------
Confidence 35567777777788888888877777776553 345666777777778888888887777765211
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHH
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDAR 1505 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~ 1505 (2037)
.+ +.++..+|..+...|+ .+++.+.|.+++++.|.....|+.+|.++..-..-..
T Consensus 376 ------~~-----------------~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~ 430 (537)
T 3fp2_A 376 ------TL-----------------PEVPTFFAEILTDRGD--FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILAR 430 (537)
T ss_dssp ------TC-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHH
T ss_pred ------CC-----------------hHHHHHHHHHHHHhCC--HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHH
Confidence 00 1234445555555544 6777777888877777655555444433322110000
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcC
Q 000149 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFG 1558 (2037)
Q Consensus 1506 ~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g 1558 (2037)
.......... ..-...|+..|-+++...+++. .....+-.++...|
T Consensus 431 ~~~~~~~~~~------~~~~~~A~~~~~~a~~~~p~~~-~~~~~l~~~~~~~g 476 (537)
T 3fp2_A 431 QSSQDPTQLD------EEKFNAAIKLLTKACELDPRSE-QAKIGLAQLKLQME 476 (537)
T ss_dssp HHTC----CC------HHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTT
T ss_pred Hhhccchhhh------HhHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhc
Confidence 0000000000 0123468888888888776643 23333434444444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0017 Score=77.98 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+.+..+.|.++.|...+.++....+ +.+....+.++...|+..+|+..+++++...|
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------- 282 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-------------- 282 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------
Confidence 46788899999999999999999999877653 45777889999999999999999999876311
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch-----------HHHHHHHHh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW-----------EKGYFYMAK 1495 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w-----------eK~~~~la~ 1495 (2037)
..+.++..+|..+...|+ .+++...|.+++++.|.. ..+|+.+|.
T Consensus 283 ----------------------~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 283 ----------------------GYIRSRYNLGISCINLGA--HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 338 (368)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred ----------------------CcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence 013456677777766665 788999999999999987 788999988
Q ss_pred hhHHH
Q 000149 1496 YCDDV 1500 (2037)
Q Consensus 1496 y~d~l 1500 (2037)
.|..+
T Consensus 339 ~~~~~ 343 (368)
T 1fch_A 339 ALSML 343 (368)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77544
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0056 Score=68.94 Aligned_cols=110 Identities=11% Similarity=-0.016 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
.....|...+.+..+.|+++.|...+.++....+ +.+....|.++...|+..+|+..++.+++..|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------ 204 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------------ 204 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH------------
Confidence 3456789999999999999999999999877653 45777889999999999999999999876311
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------cchHHHHHHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQ------PMWEKGYFYMA 1494 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~------~~weK~~~~la 1494 (2037)
..+.++..+|..+...|+ .+++...|+++++++ |.....+..++
T Consensus 205 ------------------------~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 205 ------------------------NFVRAYIRKATAQIAVKE--YASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 014467777877777765 788889999999998 55544444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0079 Score=70.44 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
...|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 4579999999999999999999999987664 567888899999999999999999998765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0023 Score=75.02 Aligned_cols=260 Identities=11% Similarity=-0.009 Sum_probs=157.6
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
.+...+...|+|++|..+|+++++..|++......+-.|+...|+++......+......|..... ......+....|+
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~la~~~~~~~~ 104 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV-HAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHH-HHHHHHHHHHcCC
Confidence 345566788899999999998888888888777778888888898888777766655544433222 2233456677888
Q ss_pred hhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh
Q 000149 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2037)
Q Consensus 1199 Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh 1278 (2037)
|+...+++...-... +........+...+ ... . ....++... -+.
T Consensus 105 ~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~-------~---~~~~~~~~~----------------~~~ 149 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ------PQYEQLGSVNLQAD---VDI-------D---DLNVQSEDF----------------FFA 149 (327)
T ss_dssp HHHHHHHHHHHHHTS------TTTTTC---------------------------------C----------------CTT
T ss_pred HHHHHHHHHHHHHhC------CccHHHHHHHhHHH---HHH-------H---HHHHHHHhH----------------HHH
Confidence 877666554332110 00000000000000 000 0 000000000 001
Q ss_pred hHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHH
Q 000149 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Akl 1358 (2037)
...+.+++..++ +.=+.. . ......|...+.+
T Consensus 150 ~~~~~~~A~~~~------------------------~~~~~~-------------------~-----~~~~~~~~~la~~ 181 (327)
T 3cv0_A 150 APNEYRECRTLL------------------------HAALEM-------------------N-----PNDAQLHASLGVL 181 (327)
T ss_dssp SHHHHHHHHHHH------------------------HHHHHH-------------------S-----TTCHHHHHHHHHH
T ss_pred HcccHHHHHHHH------------------------HHHHhh-------------------C-----CCCHHHHHHHHHH
Confidence 111112211111 110000 0 0124578889999
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000149 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 1436 (2037)
..+.|+++.|...+.++....+ +.+....|.++...|+..+|+..++++++..+ .
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-------------------~---- 238 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-------------------G---- 238 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------T----
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------C----
Confidence 9999999999999999877653 45677889999999999999999999876311 0
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------------hHHHHHHHHhhhHHH
Q 000149 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM------------WEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1437 ~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~------------weK~~~~la~y~d~l 1500 (2037)
.+.++..+|......|+ .+++.+.|+++++..|. ...+|+.+|..+.+.
T Consensus 239 -------------~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 239 -------------YVRVMYNMAVSYSNMSQ--YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp -------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred -------------CHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 03355666776666665 78899999999999998 788888888776443
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.018 Score=79.73 Aligned_cols=196 Identities=10% Similarity=0.096 Sum_probs=97.8
Q ss_pred ChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccC--CCcchhhHHHHHHHHhh
Q 000149 512 DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRV--SPSSTKHVISQVFAALI 589 (2037)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~--~~~~l~~ll~~i~~~li 589 (2037)
+....+++.+.++.|++.+|+.+.++.|+++..|..+++..+. ...+..=..+++.+... ....+..++..++..++
T Consensus 706 ~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~-~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 784 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC-APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSF 784 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC-HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999877554 22344444455555431 01124444444444444
Q ss_pred hhcccC-----CCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 000149 590 PFLERD-----KDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGL 664 (2037)
Q Consensus 590 p~~~~~-----~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl 664 (2037)
..+... .+.| ..++....++..++..+...+ ++ .+.++..-+...+..+
T Consensus 785 ~~l~~~~~~~~~~~p-d~~~~~f~ll~~~l~~~p~~~---------~~----------------s~~~l~~i~~~~~~~l 838 (971)
T 2x1g_F 785 KLFESTPEQNFSNIS-DTMETFFGCLTQIIKKIPQVL---------ED----------------KTLAYDRLVFYAQRGM 838 (971)
T ss_dssp HHHTSCTTTHHHHTH-HHHHHHHHHHHHHHHSSGGGG---------GC----------------TTSCHHHHHHHHHHHH
T ss_pred HHHhcccccCCccCc-hHHHHHHHHHHHHHHhCcHHH---------cC----------------CcccHHHHHHHHHHHc
Confidence 444321 0011 111222222222222221111 11 1222444555556666
Q ss_pred cCCChhHHHHHHHHHHHHHhhc--HHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCcc
Q 000149 665 NHENLNVRYMVVCELSKLLKLK--SEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAV 742 (2037)
Q Consensus 665 ~~en~~Vr~~aL~eL~~~L~~~--~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGal 742 (2037)
.++...+..-+++-|..++... +..++..+.. ....|+..++.+...... .......+++|+.|+..
T Consensus 839 ~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~-------~g~~l~~~l~~~~~~~~~----~s~~~~~a~~l~~l~~~ 907 (971)
T 2x1g_F 839 TLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLA-------TGEQTLYTAMMCVGYLTP----RSQVDKFADILLAMNRK 907 (971)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH-------HHHHHHHHHHHHHHTTSC----GGGGGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-------hHHHHHHHHHHHhcccCC----hhHHHHHHHHHHHHHHH
Confidence 6666666666666666655542 2223333331 234566666655432111 12234456777777766
Q ss_pred Ccc
Q 000149 743 DPA 745 (2037)
Q Consensus 743 Dp~ 745 (2037)
.|.
T Consensus 908 ~~~ 910 (971)
T 2x1g_F 908 YAA 910 (971)
T ss_dssp HHH
T ss_pred CcH
Confidence 664
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0026 Score=74.56 Aligned_cols=108 Identities=13% Similarity=0.048 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..+++++...+..
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------------ 273 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG------------ 273 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------------
Confidence 4578999999999999999999999987764 34577788999999999999999999987632210
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL 1482 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l 1482 (2037)
... .. .......+.++..+|..+...|+ .+++...|+++++.
T Consensus 274 -------~~~----~~-~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 274 -------TTP----TG-EASREATRSMWDFFRMLLNVMNR--PDLVELTYAQNVEP 315 (327)
T ss_dssp -------CC----------CCTHHHHHHHHHHHHHHHTTC--HHHHHHHTTCCSHH
T ss_pred -------ccc----cc-cchhhcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHh
Confidence 000 00 00011235677788888777776 45555555544443
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=97.60 E-value=0.036 Score=76.58 Aligned_cols=148 Identities=11% Similarity=0.176 Sum_probs=87.7
Q ss_pred ChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccC--CCcchhhHHHHHHHHhh
Q 000149 512 DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRV--SPSSTKHVISQVFAALI 589 (2037)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~--~~~~l~~ll~~i~~~li 589 (2037)
+......+.+.++.++..+|.+..++.|+++..+.......+. ...++.-..++...... ....+..++..++..++
T Consensus 698 ~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l 776 (963)
T 2x19_B 698 DAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ-ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTL 776 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc-cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 3466788899999999999999999999999888777654322 23445555566633211 01123333333444444
Q ss_pred hhccc-CCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCC
Q 000149 590 PFLER-DKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHEN 668 (2037)
Q Consensus 590 p~~~~-~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en 668 (2037)
+.+.. ..+.| ..++...+++..++..+...+ ++ .+..+..-+..++..+++..
T Consensus 777 ~~~~~~~~~~p-d~~~~~f~ll~~~~~~~~~~~---------~~----------------~~~~~~~i~~~~~~~l~~~~ 830 (963)
T 2x19_B 777 TLFQQGPRDHP-DIVDSFMQLLAQALKRKPDLF---------LC----------------ERLDVKAVFQCAVLALKFPE 830 (963)
T ss_dssp HHHHHCTTTCH-HHHHHHHHHHHHHHHHCGGGG---------GC----------------TTSCHHHHHHHHHHHTTCSC
T ss_pred HHHhhCcccCc-hHHHHHHHHHHHHHHhCcHHH---------cC----------------CcccHHHHHHHHHHHcCCCC
Confidence 44432 21222 344555555555544332211 00 11134556667778888889
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 000149 669 LNVRYMVVCELSKLLKLK 686 (2037)
Q Consensus 669 ~~Vr~~aL~eL~~~L~~~ 686 (2037)
..+...++.-|..++...
T Consensus 831 ~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 831 APTVKASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999988653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0026 Score=76.62 Aligned_cols=256 Identities=12% Similarity=-0.013 Sum_probs=152.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
.....+...|++++|..+|+++++..|++......+-.|+..+|+++......+......|.....+. ....+.+..|+
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~g~ 148 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM-ALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHcccc
Confidence 34556678888888888888888888888887778888888888888777776665554454322222 23456667777
Q ss_pred hhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh
Q 000149 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2037)
Q Consensus 1199 Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh 1278 (2037)
++.-.+++...-.. . .+.......+ . .....+. ..-.-+.
T Consensus 149 ~~~A~~~~~~al~~------------------------~-p~~~~~~~~~-------~-----~~~~~~~---~l~~~~~ 188 (365)
T 4eqf_A 149 QQDACEALKNWIKQ------------------------N-PKYKYLVKNK-------K-----GSPGLTR---RMSKSPV 188 (365)
T ss_dssp HHHHHHHHHHHHHH------------------------C-HHHHCC----------------------------------
T ss_pred HHHHHHHHHHHHHh------------------------C-ccchHHHhhh-------c-----cchHHHH---HHHHHHh
Confidence 77665544332110 0 0000000000 0 0000000 0000001
Q ss_pred hHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHH
Q 000149 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Akl 1358 (2037)
...+.+++..++. .=+.. .+.. .....|...+.+
T Consensus 189 ~~g~~~~A~~~~~------------------------~al~~-------------------~p~~---~~~~~~~~l~~~ 222 (365)
T 4eqf_A 189 DSSVLEGVKELYL------------------------EAAHQ-------------------NGDM---IDPDLQTGLGVL 222 (365)
T ss_dssp CCHHHHHHHHHHH------------------------HHHHH-------------------SCSS---CCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHH------------------------HHHHh-------------------CcCc---cCHHHHHHHHHH
Confidence 1112222222211 00000 0110 024568888999
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000149 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 1436 (2037)
..+.|+++.|...+.++....+ +.+....+.++...|+..+|+..+++++...| .
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-------------------~---- 279 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-------------------G---- 279 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------T----
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------------C----
Confidence 9999999999999999877643 45677889999999999999999999876311 0
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------------hHHHHHHHHhhhHH
Q 000149 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM------------WEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1437 ~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~------------weK~~~~la~y~d~ 1499 (2037)
.+.++..+|..+...|+ .+++...|++|+++.|+ ....|..+|..+..
T Consensus 280 -------------~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 280 -------------FIRSRYNLGISCINLGA--YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp -------------CHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence 14466677777766665 68888999999999886 24567777766543
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=97.50 E-value=0.27 Score=64.23 Aligned_cols=462 Identities=13% Similarity=0.125 Sum_probs=234.9
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2037)
+..-+.++ ......+++-.+...+..+++...+...+ -+..+..-|.|++..+|-.|-+++..+.
T Consensus 50 ~~~~vi~l-~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~~n~l~kdL~~~n~~ir~~AL~~L~~i~--------- 114 (591)
T 2vgl_B 50 LFPDVVNC-MQTDNLELKKLVYLYLMNYAKSQPDMAIM-----AVNSFVKDCEDPNPLIRALAVRTMGCIR--------- 114 (591)
T ss_dssp GHHHHHHT-TSSSCHHHHHHHHHHHHHHHHHSHHHHHT-----THHHHGGGSSSSSHHHHHHHHHHHHTCC---------
T ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHHHHcccCchHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCC---------
Confidence 44445554 34455666766666776666543322111 1234455579999999999988887743
Q ss_pred cccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHHHHHH
Q 000149 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLI 305 (2037)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i 305 (2037)
+..-.+.++..+.+.+. -+||.|+.+...+++.|.. ...|... -.+=.|.+-|..+|+.|+..|..-|
T Consensus 115 ------~~~~~~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~---~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL 184 (591)
T 2vgl_B 115 ------VDKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHD---INAQMVEDQGFLDSLRDLIADSNPMVVANAVAAL 184 (591)
T ss_dssp ------SGGGHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHH---SSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHh---hChhhcccccHHHHHHHHhCCCChhHHHHHHHHH
Confidence 11122445666777665 5689999999999999955 2345443 2345688888999999999999999
Q ss_pred HHHHhhhhcc-CcccccchhhhhhhhhhHHHHHhhc-CchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhH
Q 000149 306 RKSCFFHLKG-GCELLVSKAVLICNELFDYLSVRLA-SRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQA 383 (2037)
Q Consensus 306 ~~la~~~~~~-~~~l~~~~~~~~~~~l~~~~~~~l~-~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~ 383 (2037)
..+|...... .+.+ ....+..+++.+. ..|..-..+. ++|.... | ..+..+
T Consensus 185 ~~i~~~~~~~~~~~l--------~~~~~~~Ll~~l~~~~~~~q~~il---------~~l~~l~----~------~~~~~~ 237 (591)
T 2vgl_B 185 SEISESHPNSNLLDL--------NPQNINKLLTALNECTEWGQIFIL---------DCLSNYN----P------KDDREA 237 (591)
T ss_dssp HHHTTSCCSCCSCCC--------HHHHHHHHHHHHHHCCHHHHHHHH---------HHHHTSC----C------CSHHHH
T ss_pred HHHHhhCCCccchhc--------cHHHHHHHHHcCCCCCchHHHHHH---------HHHHHhC----C------CChHHH
Confidence 9998765322 1111 1122333443332 1121111100 0111110 1 111011
Q ss_pred HHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHHhhcC-----CC-hHHHHHhhhHHHHHHHHHhhc
Q 000149 384 VNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQTG-----SD-NQEIFAAALPALLDELICFVD 457 (2037)
Q Consensus 384 ~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~-----~~-~~~~~~~~~~~~l~ell~~~~ 457 (2037)
...+..+.. ++...+..-..++...+..... .+ .+.++....+.++ . +.
T Consensus 238 ~~~l~~l~~--------------------~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~----L~ 292 (591)
T 2vgl_B 238 QSICERVTP--------------------RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-T----LL 292 (591)
T ss_dssp HHHHHHHTT--------------------CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-H----HT
T ss_pred HHHHHHHHH--------------------HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-H----Hh
Confidence 111111111 1112223333444443333221 11 2222333333333 2 22
Q ss_pred CCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccc
Q 000149 458 GGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTY 537 (2037)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~ 537 (2037)
.+|.+ .+.. +-.++..+... .++.+..++. .|- +.. +++...|++++.-+.. ++... -
T Consensus 293 ~~d~~--vr~~--aL~~l~~i~~~--~p~~~~~~~~--------~~~-~~~-~d~~~Ir~~al~~L~~---l~~~~---n 350 (591)
T 2vgl_B 293 SGEPE--VQYV--ALRNINLIVQK--RPEILKQEIK--------VFF-VKY-NDPIYVKLEKLDIMIR---LASQA---N 350 (591)
T ss_dssp TSCHH--HHHH--HHHHHHHHHHH--CCSTTTTCTT--------TTS-CCT-TSCHHHHHHHHHHHHH---TCCSS---T
T ss_pred cCCcc--HHHH--HHHHHHHHHHh--ChHHHHHHHH--------hhe-ecc-CChHHHHHHHHHHHHH---HCChh---h
Confidence 23332 1211 12233333221 2332222211 110 111 3457788888754443 33331 1
Q ss_pred hHHHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHH
Q 000149 538 VPKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVL 615 (2037)
Q Consensus 538 ~pqI~a~L~saL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~ 615 (2037)
...|+.-|...+.. ++++..++.+-..+... ..+....++..++.++..- .....+.+...+..|+.
T Consensus 351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~--------~~~~~~~~v~~Ll~ll~~~---~~~v~~e~i~~l~~ii~ 419 (591)
T 2vgl_B 351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK--------VEQSAERCVSTLLDLIQTK---VNYVVQEAIVVIRDIFR 419 (591)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHHH
Confidence 34455555555543 34555544333333322 2233456666777777522 22345566666777776
Q ss_pred HhHH-------HHHhhcccCCCCCCchhh-HHHHHHHHHhcCC-CCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhc
Q 000149 616 KNRA-------ILKQHIHEFPLLPSIAAL-TEVNKAIQEARGP-MTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLK 686 (2037)
Q Consensus 616 ~n~~-------~L~~~i~~lp~Lp~ip~L-~~v~~~l~~~r~~-~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~ 686 (2037)
.+.+ .|.+.+.+ .. .|.. ..+--.+-++... .+..+.++.|+++...|+..|+.++++.+.++..+.
T Consensus 420 ~~p~~~~~~v~~L~~~l~~---~~-~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~ 495 (591)
T 2vgl_B 420 KYPNKYESIIATLCENLDS---LD-EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKK 495 (591)
T ss_dssp HSCSSCCTTHHHHHHTTTT---CC-SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTC
T ss_pred HCcchHHHHHHHHHHHHHh---cc-CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 6542 22222221 11 1322 1122223344332 346788999999999999999999999999987654
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCc
Q 000149 687 SEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGA 741 (2037)
Q Consensus 687 ~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGa 741 (2037)
. . ....++..+|..|...+ .+.+++..+.+.++++..
T Consensus 496 p------------~---~~~~~i~~ll~~~~~d~---~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 496 P------------S---ETQELVQQVLSLATQDS---DNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp C------------S---TTHHHHHHHHHHHHTTC---CCHHHHHHHHHHHTTTTT
T ss_pred c------------h---HHHHHHHHHHHHhhhcC---CChHHHHHHHHHHHHHCc
Confidence 2 1 12356677777665322 246899999999999965
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.011 Score=72.02 Aligned_cols=110 Identities=12% Similarity=0.040 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~ 1419 (2037)
.+.+|...+.+..+.|+++.|...+.++... +. ..+....|.+++..|+..+|+..+++++...+
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------- 334 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ------- 334 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------
Confidence 3567899999999999999999988877543 22 34567789999999999999999999876211
Q ss_pred ccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH
Q 000149 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG 1489 (2037)
Q Consensus 1420 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~ 1489 (2037)
...+....+.++..+|......|+ .+++.+.|++|.++.+.....
T Consensus 335 -----------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~ 379 (411)
T 4a1s_A 335 -----------------------ELGDRIGEARACWSLGNAHSAIGG--HERALKYAEQHLQLAXXXXXX 379 (411)
T ss_dssp -----------------------HHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCHHHHH
T ss_pred -----------------------HCCChHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHhhcccc
Confidence 001223457788899998888876 889999999999998866433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.017 Score=69.73 Aligned_cols=122 Identities=9% Similarity=0.031 Sum_probs=90.3
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~ 1418 (2037)
..+.+|...+.+..+.|.++.|...+.++... +. ..+....|.++...|+..+|+..++.+++..+.
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----- 299 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE----- 299 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-----
Confidence 34568899999999999999999988887543 22 235667899999999999999999998762110
Q ss_pred cccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------HHHHHH
Q 000149 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------EKGYFY 1492 (2037)
Q Consensus 1419 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w------eK~~~~ 1492 (2037)
..+....+.++..+|......|+ .+++.+.|++|.++.+.. ..++..
T Consensus 300 -------------------------~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 352 (406)
T 3sf4_A 300 -------------------------LNDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISREVGDKSGELTARLN 352 (406)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------cCCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 01123457788888988888876 889999999999885543 456667
Q ss_pred HHhhhHHH
Q 000149 1493 MAKYCDDV 1500 (2037)
Q Consensus 1493 la~y~d~l 1500 (2037)
+|..|..+
T Consensus 353 l~~~~~~~ 360 (406)
T 3sf4_A 353 LSDLQMVL 360 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77665443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0031 Score=70.66 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccC
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLS 1428 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~ 1428 (2037)
.|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..+
T Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------- 190 (243)
T 2q7f_A 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP---------------- 190 (243)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT----------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------------
Confidence 47777888888999999998888887664 355777888999999999999999998875311
Q ss_pred CCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1429 LVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1429 ~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
..+.++..+|......|+ .+++.+.|+++++++|+...+++.++...
T Consensus 191 --------------------~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 191 --------------------GHADAFYNAGVTYAYKEN--REKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTC--TTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred --------------------ccHHHHHHHHHHHHHccC--HHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 013456777777777665 67788899999999999988888876653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.026 Score=65.55 Aligned_cols=107 Identities=9% Similarity=0.051 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~ 1418 (2037)
..+.+|...+.+..+.|+++.|...+.++... +. +.+....|.++...|+..+|+..+++++...+.
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----- 295 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE----- 295 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh-----
Confidence 34568899999999999999999988876543 22 345667889999999999999999998762110
Q ss_pred cccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1419 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
..+....+.++..+|......|+ .+++...|+++.++.+.
T Consensus 296 -------------------------~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 296 -------------------------LKDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISRE 335 (338)
T ss_dssp -------------------------HTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHC---
T ss_pred -------------------------cCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHh
Confidence 01123457788888988888876 78888889998888764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.038 Score=63.07 Aligned_cols=118 Identities=8% Similarity=-0.028 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCC---chHHHHHHHHHhhcCCccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRR---SDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~---~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
...|...+..+...+.++.|...+.++....+ +.+.+..++++...|+ ..+|+..++++++.... .
T Consensus 142 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~---- 212 (272)
T 3u4t_A 142 PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP-----G---- 212 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG-----G----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc-----c----
Confidence 45677888667777799999999999877654 3567778888888888 78899999988763110 0
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
| .. .+...+.++..+|......|+ .+++++.|+++++++|+.+.++-.++..
T Consensus 213 -------~-----------~~-~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 213 -------G-----------AK-YKDELIEANEYIAYYYTINRD--KVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp -------G-----------GG-GHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred -------c-----------cc-chHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 0 00 123446788889998877765 8999999999999999988887766543
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0027 Score=73.15 Aligned_cols=177 Identities=16% Similarity=0.209 Sum_probs=128.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc-CC--CcchhhhHHHHHHHHHhccCCCcchhhHHHHHH
Q 000149 509 HAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN-KE--SLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVF 585 (2037)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~-~~--~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~ 585 (2037)
++++..+|+.++..|..+++-++........+|+..|...|. .+ ..+..++.|-..+...+. ..+.+++..++
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~----~~~~~~~~~il 100 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA----KRFSNYASACV 100 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG----GGGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHH
Confidence 345688899999999999987655455556889999999995 44 467789999999998875 36788888888
Q ss_pred HHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhcc
Q 000149 586 AALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLN 665 (2037)
Q Consensus 586 ~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~ 665 (2037)
..++..+. +....+++.+...+..++. ..++..-+..+...++
T Consensus 101 p~ll~~l~---d~~~~vr~~a~~aL~~~~~----------------------------------~~~~~~ll~~l~~~l~ 143 (242)
T 2qk2_A 101 PSLLEKFK---EKKPNVVTALREAIDAIYA----------------------------------STSLEAQQESIVESLS 143 (242)
T ss_dssp HHHHHGGG---CCCHHHHHHHHHHHHHHHT----------------------------------TSCHHHHHHHHHHHTT
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHHH----------------------------------cCCHHHHHHHHHHHHc
Confidence 88887775 3334456666666665533 1234455667788899
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000149 666 HENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2037)
Q Consensus 666 ~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2037)
|.|+.||..++.-|...+.....+ .. ..+.+..++..|+.+..+. ..+++..+.+|||.|+
T Consensus 144 ~~~~~vr~~~l~~l~~~l~~~~~~--------~~-~~~~l~~l~p~l~~~l~D~-----~~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 144 NKNPSVKSETALFIARALTRTQPT--------AL-NKKLLKLLTTSLVKTLNEP-----DPTVRDSSAEALGTLI 204 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCCGG--------GC-CHHHHHHHHHHHHHHHTSS-----CHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCC--------Cc-cHHHHHHHHHHHHHHhcCC-----ChHHHHHHHHHHHHHH
Confidence 999999999999999887664211 00 1134667777777766543 2589999999999966
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.27 Score=68.65 Aligned_cols=259 Identities=12% Similarity=0.063 Sum_probs=158.6
Q ss_pred CCCHHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChh-
Q 000149 1040 AIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQ- 1118 (2037)
Q Consensus 1040 ~Ip~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~- 1118 (2037)
.....-+|..+..-|.|+-|...+|..-+ ....+..+|.+++..|.+.-+..+-..+.+=
T Consensus 1049 ~~d~~eIA~Iai~lglyEEAf~IYkKa~~-------------------~~~A~~VLie~i~nldrAiE~Aervn~p~vWs 1109 (1630)
T 1xi4_A 1049 NYDAPDIANIAISNELFEEAFAIFRKFDV-------------------NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWS 1109 (1630)
T ss_pred hccHHHHHHHHHhCCCHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHH
Confidence 33466799999999999999999988521 1112233333555555554444322221111
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
+-.-.++..|+|.+|..+|+++ ++.+....+..|+.++|+|+.+..+..-.....++. .+...-+.|-.++++
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcC
Confidence 2234578999999999999875 556666789999999999999887765322211110 011123445567799
Q ss_pred hhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh
Q 000149 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2037)
Q Consensus 1199 Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh 1278 (2037)
++.+++|+..... ..+. .+|..+ ...+++++....-+.+ ..|.+.-..++++
T Consensus 1183 leele~fI~~~n~-----------ad~~-~iGd~l--e~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkL- 1234 (1630)
T 1xi4_A 1183 LAELEEFINGPNN-----------AHIQ-QVGDRC--YDEKMYDAAKLLYNNV-------------SNFGRLASTLVHL- 1234 (1630)
T ss_pred HHHHHHHHhCCCH-----------HHHH-HHHHHH--HhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHh-
Confidence 9999998753321 2232 355443 3345554444333221 2333333333333
Q ss_pred hHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHH
Q 000149 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Akl 1358 (2037)
.|++++++... ++ ....+|.+.+-.
T Consensus 1235 --ge~q~AIEaar--------------------------------------------KA---------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1235 --GEYQAAVDGAR--------------------------------------------KA---------NSTRTWKEVCFA 1259 (1630)
T ss_pred --CCHHHHHHHHH--------------------------------------------Hh---------CCHHHHHHHHHH
Confidence 44555544332 11 002478888888
Q ss_pred HHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1359 CRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
|-..|.+..|..+.++. ...|+..-+-++.+-+.|..++||..++.++.
T Consensus 1260 cve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999999988753 23455555778888899999999999998875
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.095 Score=65.09 Aligned_cols=401 Identities=14% Similarity=0.103 Sum_probs=193.3
Q ss_pred HhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchh-hH-HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000149 198 LLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSN-EL-KLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2037)
Q Consensus 198 ~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2037)
.+.+++..+|..+...+..++... .+...... +. .++..+-+.+...+|+.++...+..++.|.......
T Consensus 28 ~l~s~~~~~r~~A~~~L~~l~~~~--------~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 28 MIFSKSPEQQLSATQKFRKLLSKE--------PNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHSS--------SSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCC--------CCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 348999999999999999865210 00000111 11 466777776766668999999999999985421111
Q ss_pred chhH--HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcC--chHHHHHHHH
Q 000149 276 SQHF--LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS--RPIMVREFAE 351 (2037)
Q Consensus 276 ~e~~--~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~--~p~~~~~~~e 351 (2037)
.+.+ .-++-.|++.|.++++.+|..|..-|.+++...... +..-+...+.+.+++-+.. .+.+....+
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~- 171 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC-------RDYVLDCNILPPLLQLFSKQNRLTMTRNAV- 171 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTCHHHHHHHTTSCCCHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHH-------HHHHHHCCCHHHHHHHhcCCCCHHHHHHHH-
Confidence 1111 124556888899999999999999999997643110 0000111233444444442 122222211
Q ss_pred HHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHc-CCCchhHHhhhHHHHHHHHhccccHH---HHHHHHH
Q 000149 352 AAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCL-NTDMVPLIVTWIPKVLAFALHQADER---RLLSALE 427 (2037)
Q Consensus 352 ~ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~-~~~~~~l~~~~~~~Ila~ll~~~~~~---~~~~~l~ 427 (2037)
..+..|+... ...-..++ ......|..++...+++ ....+|.
T Consensus 172 ---------------------------------~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~ 217 (450)
T 2jdq_A 172 ---------------------------------WALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALS 217 (450)
T ss_dssp ---------------------------------HHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 1112221110 00001111 11112222233333322 2233333
Q ss_pred HHHhhcCCChHHHHH-hhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhh-hhHHHHHHHHHHhhh
Q 000149 428 FYCIQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPG-FLRNHFVGLLNSIDR 505 (2037)
Q Consensus 428 ~~~~~~~~~~~~~~~-~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-fl~~~~LGil~~~~~ 505 (2037)
.+........+.+.. ..+|.++ + .+...+.+. + ..+...++.+..+.+.... ++.. |++..+-.
T Consensus 218 ~l~~~~~~~~~~~~~~~~i~~L~-~---ll~~~~~~v--~-----~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ 283 (450)
T 2jdq_A 218 YLSDGPNDKIQAVIDAGVCRRLV-E---LLMHNDYKV--V-----SPALRAVGNIVTGDDIQTQVILNC---SALQSLLH 283 (450)
T ss_dssp HHTSSSHHHHHHHHHTTTHHHHH-H---HTTCSCHHH--H-----HHHHHHHHHHTTSCHHHHHHHHTT---THHHHHHH
T ss_pred HHHCCCcHHHHHHHHcCcHHHHH-H---HHCCCchhH--H-----HHHHHHHHHHhhCChHHHHHHHHC---ccHHHHHH
Confidence 333211001111222 2334444 2 333333221 1 1233334434333322211 2222 45554433
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhH
Q 000149 506 KMLHAEDLSLQKQALKRIEILIEMIGSHL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHV 580 (2037)
Q Consensus 506 ~l~~~~~~~~k~~~l~sl~~li~l~g~~v-----~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~l 580 (2037)
. +..++...++.++.+|+.|..-....+ ..+.|.++..|.+. .++++..++.+-..+...- +++.+..+
T Consensus 284 l-l~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~---~~~~~~~l 357 (450)
T 2jdq_A 284 L-LSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSGG---SAEQIKYL 357 (450)
T ss_dssp H-TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHC---CHHHHHHH
T ss_pred H-HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCC---CHHHHHHH
Confidence 3 334456788899999988764111111 24566666666653 4556666666555555432 22344444
Q ss_pred HH-HHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHH
Q 000149 581 IS-QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLA 659 (2037)
Q Consensus 581 l~-~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~ 659 (2037)
++ .++..|+.+++.. ....+..+...|..|+......-. ... ..++ .+...+.+..+ .+.|
T Consensus 358 ~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~--~~~----~~~~---~~~~~l~~~g~----~~~l-- 419 (450)
T 2jdq_A 358 VELGCIKPLCDLLTVM---DSKIVQVALNGLENILRLGEQEAK--RNG----TGIN---PYCALIEEAYG----LDKI-- 419 (450)
T ss_dssp HHHTCHHHHHHGGGSS---CHHHHHHHHHHHHHHHHHHHHHHH--HSC----SCCC---HHHHHHHHHHC----HHHH--
T ss_pred HHCCCHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhchhhhh--ccc----cchh---HHHHHHHHcCc----HHHH--
Confidence 43 3556666666532 345677888888887765432211 000 0111 12223333322 1222
Q ss_pred HHhhccCCChhHHHHHHHHHHHHHhhcH
Q 000149 660 AVDGLNHENLNVRYMVVCELSKLLKLKS 687 (2037)
Q Consensus 660 ~~~rl~~en~~Vr~~aL~eL~~~L~~~~ 687 (2037)
..-..|+|..|+..|+.-|..++....
T Consensus 420 -~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 420 -EFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp -HHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred -HHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 233467788899999988888875443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.017 Score=69.44 Aligned_cols=240 Identities=12% Similarity=0.082 Sum_probs=139.1
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHH
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL 1122 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil 1122 (2037)
...++....+.|.|..|+.+++..+... | +.++....+ ..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p-----------------------~~~~~~~~l------------g~ 107 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-----P-----------------------GDAEAWQFL------------GI 107 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T-----------------------TCHHHHHHH------------HH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----c-----------------------CCHHHHHHH------------HH
Confidence 4578899999999999999999977642 1 011222222 23
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhH
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~l 1202 (2037)
.+...|++++|..+|+++++..|++......+-.|+..+|+++......+......|.....+...+..
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~----------- 176 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS----------- 176 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc-----------
Confidence 456789999999999999999999988888899999999999988777766554444322211111000
Q ss_pred HHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHH-HHhhhHH
Q 000149 1203 DEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFI-VKLHLLQ 1281 (2037)
Q Consensus 1203 ee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l-~kLh~L~ 1281 (2037)
......+|.++ ...++..+..+.++.+... .+... ....+-.+ .-+....
T Consensus 177 --------------------~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~-----~p~~~--~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 177 --------------------PGLTRRMSKSP--VDSSVLEGVKELYLEAAHQ-----NGDMI--DPDLQTGLGVLFHLSG 227 (365)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHH-----SCSSC--CHHHHHHHHHHHHHHT
T ss_pred --------------------hHHHHHHHHHH--hhhhhHHHHHHHHHHHHHh-----CcCcc--CHHHHHHHHHHHHHCC
Confidence 00011111111 1112222222222222111 00000 00011000 0111112
Q ss_pred HHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHH
Q 000149 1282 ELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRL 1361 (2037)
Q Consensus 1282 ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARK 1361 (2037)
+.+++..++. .=+.. . +.....|...+.+..+
T Consensus 228 ~~~~A~~~~~------------------------~al~~-------------------~-----p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 228 EFNRAIDAFN------------------------AALTV-------------------R-----PEDYSLWNRLGATLAN 259 (365)
T ss_dssp CHHHHHHHHH------------------------HHHHH-------------------C-----TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH------------------------HHHHh-------------------C-----CCCHHHHHHHHHHHHH
Confidence 2222222211 00000 0 1225579999999999
Q ss_pred cCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1362 AGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1362 ag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
.|+++.|...+.++....+ +.+....+.++...|+..+|+..++++++.
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999877653 456778899999999999999999999873
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.033 Score=66.55 Aligned_cols=263 Identities=12% Similarity=0.067 Sum_probs=141.9
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHH
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLS 1123 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~ 1123 (2037)
..++....+.|.|..|+.+++..+... |. ....+..|. ..
T Consensus 68 ~~~~~~~~~~g~~~~A~~~~~~al~~~-----p~-------~~~~~~~l~----------------------------~~ 107 (368)
T 1fch_A 68 FEEGLRRLQEGDLPNAVLLFEAAVQQD-----PK-------HMEAWQYLG----------------------------TT 107 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-----TT-------CHHHHHHHH----------------------------HH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC-------CHHHHHHHH----------------------------HH
Confidence 467788888888888888888876531 10 011122222 23
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHH--------------H
Q 000149 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQ--------------G 1189 (2037)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~--------------~ 1189 (2037)
+...|++++|..+|+++++..|++......+-.|+..+|+++......+......|.....+... .
T Consensus 108 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 108 QAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CT
T ss_pred HHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHH
Confidence 45667788888888888777777777777777777777887776666665544444332222111 1
Q ss_pred HHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHh
Q 000149 1190 VQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTR 1269 (2037)
Q Consensus 1190 ~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r 1269 (2037)
+......|+|+...+++...-... +..........+|.++ ...++..+..+.++.+... .+. . ..
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~-----~~~---~-~~ 252 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLD----PTSIDPDVQCGLGVLF--NLSGEYDKAVDCFTAALSV-----RPN---D-YL 252 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHS----TTSCCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH-----CTT---C-HH
T ss_pred HHHHhhcccHHHHHHHHHHHHHhC----cCcccHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHh-----CcC---C-HH
Confidence 222225666766665554432110 0000122333344333 3455555444444333221 010 0 00
Q ss_pred hhHHHHH-hhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchh
Q 000149 1270 AYPFIVK-LHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEV 1348 (2037)
Q Consensus 1270 ~y~~l~k-Lh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~ 1348 (2037)
++-.+-. +..+.+.+++...+ +. .+. .. +..
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~------------------------~~--------------al~-----~~-----~~~ 284 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAY------------------------RR--------------ALE-----LQ-----PGY 284 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH------------------------HH--------------HHH-----HC-----TTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHH------------------------HH--------------HHH-----hC-----CCc
Confidence 1111100 01111111111111 10 000 01 123
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--C-----------ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--A-----------PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~-----------p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
...|...+.+..+.|+++.|...+.++.... . +.+....+..+...|+.++|....+..++
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 4678999999999999999999988876542 2 45677788999999999998887766554
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.073 Score=68.34 Aligned_cols=400 Identities=12% Similarity=0.090 Sum_probs=193.7
Q ss_pred hcccHHHHHHHHHHHhHhhhh---hhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc
Q 000149 200 LNKRKAIRDAFCTQIGYFLQD---TVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS 276 (2037)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~ 276 (2037)
.+++..+|..++..+..++.. +-...+. ...++..+.+.+...+|+.+++..+.+++.|........
T Consensus 97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~----------~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 97 NSDDMQEQLSATVKFRQILSREHRPPIDVVI----------QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHH----------HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCccHHHHH----------HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 788899999999999887621 1111111 123455666666655689999999999999844211111
Q ss_pred hhH--HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCc-hHHHHHHHHHH
Q 000149 277 QHF--LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASR-PIMVREFAEAA 353 (2037)
Q Consensus 277 e~~--~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~-p~~~~~~~e~l 353 (2037)
..+ .-++-.|+..|.++++-++..|..-|.++|...... +..-....+.+.++.-+... |.+....
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~-------~~~~~~~~~l~~L~~ll~~~~~~v~~~a---- 235 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY-------RDYVLQCNAMEPILGLFNSNKPSLIRTA---- 235 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTCHHHHHHGGGSCCHHHHHHH----
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc-------hHHHHHcCcHHHHHHHhccCCHHHHHHH----
Confidence 111 112445777778899999999999999997542110 00000011223333333221 1111111
Q ss_pred hCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHH---HHHHHHHH
Q 000149 354 FGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRL---LSALEFYC 430 (2037)
Q Consensus 354 l~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~---~~~l~~~~ 430 (2037)
...|..|+...+..............|..++..++++.. ..+|..+.
T Consensus 236 ------------------------------~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 236 ------------------------------TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp ------------------------------HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 122222222110111122223333344444444444333 33444433
Q ss_pred hhcCCChHHHHH-hhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCCh-hhhhHHHHHHHHHHhhhhhc
Q 000149 431 IQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDL-PGFLRNHFVGLLNSIDRKML 508 (2037)
Q Consensus 431 ~~~~~~~~~~~~-~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~fl~~~~LGil~~~~~~l~ 508 (2037)
.......+.++. ..+|.++ + .+...+.+. + ..++..++.+..+.+.. ..++.. |++..+-.. +
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv-~---lL~~~~~~v--~-----~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~l-L 350 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLV-E---LLSHESTLV--Q-----TPALRAVGNIVTGNDLQTQVVINA---GVLPALRLL-L 350 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHH-H---GGGCSCHHH--H-----HHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHH-T
T ss_pred CCCHHHHHHHHhcCcHHHHH-H---HHCCCChhh--H-----HHHHHHHHHHHcCCHHHHHHHHHc---chHHHHHHH-H
Confidence 211101122222 2333333 2 344433221 1 12333444444333222 223333 444444322 3
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHH-
Q 000149 509 HAEDLSLQKQALKRIEILIEMIGSHL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVIS- 582 (2037)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v-----~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~- 582 (2037)
...+...++.++.+|+.+..-....+ ..+.|.++..|.+ ..++++..++.+-..+...-.. .|+....++.
T Consensus 351 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~ 427 (530)
T 1wa5_B 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQ 427 (530)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHC
Confidence 34467788899999988764111122 2466777777765 2456666666665555554210 0123333221
Q ss_pred HHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHh
Q 000149 583 QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVD 662 (2037)
Q Consensus 583 ~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~ 662 (2037)
.++..|+.++.. .....+..+...|..|+............ . ...+...+.+.. -+..+..
T Consensus 428 ~~l~~L~~ll~~---~~~~v~~~al~aL~~l~~~~~~~~~~~~~------~---~~~~~~~l~~~g-------~~~~L~~ 488 (530)
T 1wa5_B 428 GCIKPLCDLLEI---ADNRIIEVTLDALENILKMGEADKEARGL------N---INENADFIEKAG-------GMEKIFN 488 (530)
T ss_dssp TCHHHHHHHTTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHTC------S---SCHHHHHHHHTT-------HHHHHHG
T ss_pred CCHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhhhhhhhcccc------c---ccHHHHHHHHcC-------cHHHHHH
Confidence 244455555542 23456778888888887654332211000 0 111222222211 1233344
Q ss_pred hccCCChhHHHHHHHHHHHHHhhcH
Q 000149 663 GLNHENLNVRYMVVCELSKLLKLKS 687 (2037)
Q Consensus 663 rl~~en~~Vr~~aL~eL~~~L~~~~ 687 (2037)
-++|+|..|+..|..-|..++....
T Consensus 489 L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 489 CQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHcCCCHHHHHHHHHHHHHHCCccc
Confidence 5678999999999999988876543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.08 E-value=1.3 Score=56.41 Aligned_cols=134 Identities=12% Similarity=0.142 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcC----Ch----HHHHHHHHHHhhc--CCChHHHHHHHHHHH-------cCCch-------HHHHHH
Q 000149 1349 GNCWLQYAKLCRLAG----HY----ETATRAILEAQAS--GAPNVHMEKAKLLWS-------TRRSD-------GAIAEL 1404 (2037)
Q Consensus 1349 ~~~WL~~AklARKag----~~----~~A~~aLl~a~~~--~~p~~~iE~AKLLW~-------~g~~~-------~Ai~~L 1404 (2037)
...|..+...-++++ .. +.|.....+|... ..+.+-+.+|++++. .|+.. +|+..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 467888887777643 11 2333344444333 457788999999997 78876 899999
Q ss_pred HHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Q 000149 1405 QQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQP 1484 (2037)
Q Consensus 1405 ~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~ 1484 (2037)
+++++.. .|. .+.+++.+|.+....|+ .+++.+.|.++++..|
T Consensus 310 ~~Al~~~------------------~p~-----------------~~~l~~~~~~~~~~~g~--~~~A~~~~~~al~~~p 352 (530)
T 2ooe_A 310 ERAISTL------------------LKK-----------------NMLLYFAYADYEESRMK--YEKVHSIYNRLLAIED 352 (530)
T ss_dssp HHHTTTT------------------CSS-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHSSS
T ss_pred HHHHHHh------------------Ccc-----------------cHHHHHHHHHHHHhcCC--HHHHHHHHHHHhCccc
Confidence 9987521 010 14567888888877775 8899999999999999
Q ss_pred ch-HHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCc
Q 000149 1485 MW-EKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2037)
Q Consensus 1485 ~w-eK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~ 1541 (2037)
.. ..+|..+|.++.+.- -...|...|-+++...+.
T Consensus 353 ~~~~~~~~~~~~~~~~~~----------------------~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 353 IDPTLVYIQYMKFARRAE----------------------GIKSGRMIFKKAREDART 388 (530)
T ss_dssp SCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTCTTC
T ss_pred cCchHHHHHHHHHHHHhc----------------------CHHHHHHHHHHHHhccCC
Confidence 75 478999988764321 123577888888876554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.046 Score=61.66 Aligned_cols=105 Identities=15% Similarity=0.056 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..+
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-------------- 206 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG-------------- 206 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------------
Confidence 3456777888888888888888888876654 345677788888888888888888888765211
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHH
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYF 1491 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~ 1491 (2037)
. ...++..++......|+ .+++.+.|+++.+..|.....+.
T Consensus 207 -----~-----------------~~~~~~~~~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 207 -----Q-----------------NARSLLLGIRLAKVFED--RDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp -----C-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTSHHHHH
T ss_pred -----C-----------------cHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHCCCCHHHHH
Confidence 0 02244555555555554 67788888888888887654443
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.11 Score=66.65 Aligned_cols=399 Identities=15% Similarity=0.091 Sum_probs=196.0
Q ss_pred hhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccch--hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc
Q 000149 199 LLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS--NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS 276 (2037)
Q Consensus 199 ~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~ 276 (2037)
|.+++..+|..++..+..++ ++....... .....+..+-+.+...+++.+++..+.+++.|+.......
T Consensus 83 L~s~~~~~~~~A~~~L~~l~---------s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLL---------SIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHH---------TCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHh---------cCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 38889999999999998875 211100000 1123455666666665669999999999999954222222
Q ss_pred hhHHH--HHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcC--chHHHHHHHHH
Q 000149 277 QHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS--RPIMVREFAEA 352 (2037)
Q Consensus 277 e~~~~--~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~--~p~~~~~~~e~ 352 (2037)
..+.- ++-.|+..|.++++-++..|..-|.++|...... +..-......+++++-|.. .|.+....|
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-------~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~-- 224 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC-------RDLVLANGALLPLLAQLNEHTKLSMLRNAT-- 224 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH-------HHHHHHTTCHHHHHHTCCTTCCHHHHHHHH--
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh-------HHHHHHCCcHHHHHHHHhcCCCHHHHHHHH--
Confidence 22211 4556889999999999999999999997543110 0000001122334433321 222222222
Q ss_pred HhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHHhh
Q 000149 353 AFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQ 432 (2037)
Q Consensus 353 ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~ 432 (2037)
.+|..++.... .............|..++...+++....++.-+...
T Consensus 225 --------------------------------~~L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 225 --------------------------------WTLSNFCRGKP-QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYL 271 (528)
T ss_dssp --------------------------------HHHHHHHCSSS-CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHcCCC-CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 12222211100 001111122233333444444444333333333322
Q ss_pred cCCCh---HHHHH-hhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChh-hhhHHHHHHHHHHhhhhh
Q 000149 433 TGSDN---QEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLP-GFLRNHFVGLLNSIDRKM 507 (2037)
Q Consensus 433 ~~~~~---~~~~~-~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fl~~~~LGil~~~~~~l 507 (2037)
...+. +.++. ..+|.++ + .+..++... + ..++..++.+..+..... .++.. |++..+-..+
T Consensus 272 ~~~~~~~~~~~~~~g~v~~Lv-~---lL~~~~~~v--~-----~~a~~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL 337 (528)
T 4b8j_A 272 SDGTNDKIQAVIEAGVCPRLV-E---LLLHPSPSV--L-----IPALRTVGNIVTGDDAQTQCIIDH---QALPCLLSLL 337 (528)
T ss_dssp TSSCHHHHHHHHHTTCHHHHH-H---HTTCSCHHH--H-----HHHHHHHHHHTTSCHHHHHHHHTT---THHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCHHHHHH-H---HHcCCChhH--H-----HHHHHHHHHHHcCCHHHHHHHHHh---hhHHHHHHHH
Confidence 22222 12222 2333333 2 334443221 1 234444444444332221 22222 3333333323
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhcccc-----ccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHH
Q 000149 508 LHAEDLSLQKQALKRIEILIEMIGSHL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVIS 582 (2037)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v-----~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~ 582 (2037)
.++.+...++.+..+|+.|..--...+ ..+.|.++..|.+. .++++..++.+...+...- +++....++.
T Consensus 338 ~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~ 412 (528)
T 4b8j_A 338 TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGG---SHDQIKYLVS 412 (528)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHS---CHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCC---CHHHHHHHHH
Confidence 333267788999999988864111112 14567777777664 5567777766666665541 2233333332
Q ss_pred -HHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000149 583 -QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2037)
Q Consensus 583 -~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2037)
.++..|+.++... ....+..+...|..|+......-. .... +. ..+...+.+..+ +..+.
T Consensus 413 ~~~i~~L~~lL~~~---d~~v~~~al~~L~~l~~~~~~~~~-~~~~----~~----~~~~~~i~~~~~-------~~~l~ 473 (528)
T 4b8j_A 413 EGCIKPLCDLLICP---DIRIVTVCLEGLENILKVGETDKT-LAAG----DV----NVFSQMIDEAEG-------LEKIE 473 (528)
T ss_dssp TTCHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHHHHH-HHTC----SC----CHHHHHHHHTTH-------HHHHH
T ss_pred CCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhhh-cccc----cc----cHHHHHHHHCCc-------HHHHH
Confidence 3555666666532 335577888888888765433111 1100 11 112223332221 22333
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhc
Q 000149 662 DGLNHENLNVRYMVVCELSKLLKLK 686 (2037)
Q Consensus 662 ~rl~~en~~Vr~~aL~eL~~~L~~~ 686 (2037)
+-..|+|..|+..|..-|..++...
T Consensus 474 ~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 474 NLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 4457899999999988888877653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.014 Score=72.75 Aligned_cols=318 Identities=10% Similarity=-0.013 Sum_probs=156.6
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH----hc-cC---
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL----HK-SL--- 1115 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~----r~-~~--- 1115 (2037)
..|+..-..=|.|..||-++++.+.-.+... +. ......-..+..|..+|..+++.+........ .. ..
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~-~~--~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEH-AD--QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-GG--GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-cc--ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 4678888888999999999998654211000 00 00011123567899999999999987665431 11 11
Q ss_pred Ch------hHHHHHHH--hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHH---HhccChHHHHHHhhhhhccchhhhhh
Q 000149 1116 SL------QDELLSNK--KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCL---LNMCHLQAMVTHVDGLISRIPQYKKT 1184 (2037)
Q Consensus 1116 ~l------~~qil~~E--~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL---~~Lgq~~~ll~~~~gl~~~~p~~~~~ 1184 (2037)
.. ......+- ..+++++|..+|+++++..|++.+...++-.++ .+.|+.+..+...+......|.....
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 11 11122222 345799999999999999999998877766664 44555554444333333333332222
Q ss_pred HhHHHHH---HHHhcCChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhh
Q 000149 1185 WCMQGVQ---AAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAA 1261 (2037)
Q Consensus 1185 l~~~~~E---AAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a 1261 (2037)
+..++.. .....|+++...+++...-.. .+........+|.++ ...++..+..+..+.+... .+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~--~~~~~~~~A~~~~~~al~~-----~p 278 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFY--RRKDEPDKAIELLKKALEY-----IP 278 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH-----ST
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHH--HHcCchHHHHHHHHHHHHh-----CC
Confidence 2222221 112345555555555433211 011122333455443 3455555544444433221 11
Q ss_pred hchhhHHhhhHHHHHhhhHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCC
Q 000149 1262 AGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGA 1341 (2037)
Q Consensus 1262 ~~~eSy~r~y~~l~kLh~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~ 1341 (2037)
.... +|..+-.++. +.......... . ...........++ +.+-.++++ ..
T Consensus 279 ~~~~----~~~~lg~~y~----~~~~~~~~~~~---~----~~~~~~~~~~~~~-------------~A~~~~~~a-~~- 328 (472)
T 4g1t_A 279 NNAY----LHCQIGCCYR----AKVFQVMNLRE---N----GMYGKRKLLELIG-------------HAVAHLKKA-DE- 328 (472)
T ss_dssp TCHH----HHHHHHHHHH----HHHHHHHHC-------------CHHHHHHHHH-------------HHHHHHHHH-HH-
T ss_pred ChHH----HHHHHHHHHH----HHHHHhhhHHH---H----HHHHHHHHHhhHH-------------HHHHHHHHH-hh-
Confidence 1111 1111111110 00000000000 0 0000000000010 111111221 11
Q ss_pred CCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-----HHHHHHHHH-HHcCCchHHHHHHHHHhh
Q 000149 1342 SGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-----VHMEKAKLL-WSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1342 ~~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~-----~~iE~AKLL-W~~g~~~~Ai~~L~~~i~ 1409 (2037)
++......|...+.+..+.|+++.|.....+|.....+. +....+.++ ...|+.++|+...+++++
T Consensus 329 --~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 329 --ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp --HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred --cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 112234568899999999999999999999987765443 233445544 467888999999999886
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.27 Score=61.04 Aligned_cols=190 Identities=12% Similarity=0.115 Sum_probs=112.1
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhccccccchH-HHHHHHHHHhc--CCCcchhhhHHHHHHHHHhc------c-------
Q 000149 508 LHAEDLSLQKQALKRIEILIEMIGSHLTTYVP-KILVLLMHAIN--KESLQCEGLSVLHFFIEQLS------R------- 571 (2037)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~p-qI~a~L~saL~--~~~L~~~~l~~W~~fv~~L~------~------- 571 (2037)
....+...|+.+++.++.+++..+..+..+.+ .|+..+...+. .++++..++..|..++.... +
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 34456778888999999999988777766666 77776666664 45688999999999887641 0
Q ss_pred ----CCCcchhhHHHHHHHHhhhhcccCCC----CchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHH
Q 000149 572 ----VSPSSTKHVISQVFAALIPFLERDKD----NPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKA 643 (2037)
Q Consensus 572 ----~~~~~l~~ll~~i~~~lip~~~~~~~----~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~ 643 (2037)
.....+++.+..++..++..+...++ .....+..+...|..|....
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~-------------------------- 359 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC-------------------------- 359 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT--------------------------
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc--------------------------
Confidence 00112233445555555444432110 01112344444444443221
Q ss_pred HHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCC-chhHHHHHHHHHHHhhhhccc
Q 000149 644 IQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSD-LDVLSTLISSLLRGCAEESRT 722 (2037)
Q Consensus 644 l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~-~~vi~~Lv~sLL~~c~~~~~t 722 (2037)
+..-+..-+..+...+++.+..+|.-|+.-|..+... ..+.. .+.+..++..|+.+..+.
T Consensus 360 -----~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~-----------~~~~~~~~~l~~~~~~l~~~l~d~--- 420 (462)
T 1ibr_B 360 -----EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG-----------PEPSQLKPLVIQAMPTLIELMKDP--- 420 (462)
T ss_dssp -----TTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS-----------SCTTTTCTTTTTHHHHHHHGGGCS---
T ss_pred -----cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHHhcCC---
Confidence 1111122334445566778888999988887766532 11100 134556777777766542
Q ss_pred cchhhHHHHHHHhhcccCccCc
Q 000149 723 VVGQKLKLVCADCLGALGAVDP 744 (2037)
Q Consensus 723 ~~~~~I~~lca~CLG~IGalDp 744 (2037)
+..++..|+.|||.++..-+
T Consensus 421 --~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 421 --SVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp --CHHHHHHHHHHHHHHHHHGG
T ss_pred --CHHHHHHHHHHHHHHHHhcc
Confidence 25899999999999986543
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.11 Score=64.57 Aligned_cols=147 Identities=12% Similarity=0.078 Sum_probs=91.5
Q ss_pred HHHHhhccc-CccchhHHHHHHHHHHHccCCchh-----------hhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhh
Q 000149 151 IYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDV-----------LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFL 218 (2037)
Q Consensus 151 ~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~-----------~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~ 218 (2037)
.+..+|-+. .+.+|+-++...|++.+++...+. .-..+..-...|-.++.+++..+ .++|..+..+.
T Consensus 39 ~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia 117 (462)
T 1ibr_B 39 ELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIA 117 (462)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHH
Confidence 344555554 467899998899999987653111 00111112222333447777777 77888887764
Q ss_pred hhhhhhhhccccccccchhhHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHhhhc--ccchhHHHHHHHHHHHhCCC--
Q 000149 219 QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAAD-DPLILETLLESTAELMMAVD--VHSQHFLFLLILLVEQLDNP-- 293 (2037)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~eTll~~~~~i~~~~~--~~~e~~~~~l~~Li~~L~~~-- 293 (2037)
... +.. . .+ ..++..+...+...+ |+.+++..+.+++.+++... .-...+...+-.|+..|.++
T Consensus 118 ~~~-----~~~---~-~w--~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 118 CAE-----IPV---N-QW--PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHH-----GGG---T-CC--TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC
T ss_pred HHh-----ccc---c-cc--HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCC
Confidence 211 110 1 11 346666666666544 88999999999999976431 11233444556688888888
Q ss_pred CcchHHHHHHHHHHHH
Q 000149 294 HVTVRMNASRLIRKSC 309 (2037)
Q Consensus 294 n~~~~~~a~~~i~~la 309 (2037)
++.||..|.+-+.++.
T Consensus 187 ~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 187 SNNVKLAATNALLNSL 202 (462)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7899999988777764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.13 Score=56.37 Aligned_cols=108 Identities=16% Similarity=0.047 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+.+..+.|+++.|...+.++....+ +.+....|.+++..|+..+|+..++.++...+.
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------- 179 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV------------- 179 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------
Confidence 45678888888999999999998888876543 456778899999999999999999988652110
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~l 1493 (2037)
. ...++...+......|. .+++...++.+.+..|....++..+
T Consensus 180 -----~-----------------~~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 180 -----L-----------------QADDLLLGWKIAKALGN--AQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp -----C-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----C-----------------CHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 0 02234444555444444 6777777778888888776555433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.035 Score=66.98 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
.+..|...+.+..+.|.++.|...+.+|... +. +.+....|.++...|+..+|+..++++++
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567889999999999999999988877543 32 34666789999999999999999999876
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=96.67 E-value=1.4 Score=60.76 Aligned_cols=388 Identities=11% Similarity=0.102 Sum_probs=191.9
Q ss_pred hcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhc--CChhHHHHHHHHHHHHHhhhcccch
Q 000149 200 LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAA--DDPLILETLLESTAELMMAVDVHSQ 277 (2037)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~eTll~~~~~i~~~~~~~~e 277 (2037)
.+++-..|+|++..+.++.+.- .... ..++..+-..+... .+|.|+.+.+.++|+...-...+.+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~---------~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~ 525 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETI---------DVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV 525 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSC---------CSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH
T ss_pred CCCchHHHHHHHHHHHHHHhhc---------Cchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH
Confidence 4566778999988888865221 1111 12344444333332 4789999999999998554333557
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHh---hcCchHHHHHHHHHHh
Q 000149 278 HFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR---LASRPIMVREFAEAAF 354 (2037)
Q Consensus 278 ~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~---l~~~p~~~~~~~e~ll 354 (2037)
.+..++-.|+..|++ +-|+..|...|.++|+.+.+. +.++...+.+.+...+.+. --.++.....++. ++
T Consensus 526 ~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~----l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~-i~ 598 (963)
T 2x19_B 526 MINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYD----LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGF-LL 598 (963)
T ss_dssp HHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGG----CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-HH
Confidence 777777779999965 789999999999999876542 3455544444444444321 1234444555554 44
Q ss_pred C-CChHHH---HHhhcccccchhhh--ccccChhH-------HHHHHHHHHHcCCC----------------------ch
Q 000149 355 G-VETEEL---VKKMIPAVLPKLVV--SQQDNDQA-------VNIINELAKCLNTD----------------------MV 399 (2037)
Q Consensus 355 ~-~~~~~f---L~~~~~~~LP~LVl--~~~~~~~~-------~~~i~~ia~~~~~~----------------------~~ 399 (2037)
. ++.+++ +..+.+..++.+-. ....+... ...|-.+++.++.. ..
T Consensus 599 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (963)
T 2x19_B 599 SALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVV 678 (963)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchH
Confidence 3 332333 22322222222211 11112221 23344566665532 11
Q ss_pred hHHhhhHHHHHHHHhcc--ccHHHHHHHHHHHHh---hcCCChHHHHHhhhHHHHHHHHH-hhcCCCchHHhhhhcchhH
Q 000149 400 PLIVTWIPKVLAFALHQ--ADERRLLSALEFYCI---QTGSDNQEIFAAALPALLDELIC-FVDGGDSDEINERLNRVPR 473 (2037)
Q Consensus 400 ~l~~~~~~~Ila~ll~~--~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~ell~-~~~~~~~~~~~~~~~~~~~ 473 (2037)
+++..-++ ++-.++.. .+.+....+..++.. ..+.+.. ..+|.++..++. +.+.... .+-.
T Consensus 679 ~~~~~~~~-~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~----~~l~~~~~~l~~~~~~~~~~--------~~l~ 745 (963)
T 2x19_B 679 VVLQQVFQ-LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA----PMVPQLCEMLGRMYSTIPQA--------SALD 745 (963)
T ss_dssp HHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG----GGHHHHHHHHHHHHHHSCCH--------HHHH
T ss_pred HHHHHHHH-HHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc----ccHHHHHHHHHHHHHcCCcc--------HHHH
Confidence 22222222 22222211 122223333333332 2332222 223444433322 1111111 0111
Q ss_pred HHHHHhhhcCCCC----ChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcccc--ccc-hHHHHHHHH
Q 000149 474 VIRKVSTVLTGNE----DLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHL--TTY-VPKILVLLM 546 (2037)
Q Consensus 474 ~~~~~~~~~~~~~----~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v--~~~-~pqI~a~L~ 546 (2037)
.+..+.+.....+ .+..+++.-+-.++..|++.+. +....++....-++.+++-+.+.+ ++. ...|+.++.
T Consensus 746 l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~--~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 823 (963)
T 2x19_B 746 LTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPR--DHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAV 823 (963)
T ss_dssp HHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTT--TCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcc--cCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHH
Confidence 1222211111122 2233333222222222322111 234567788999999998887754 344 677888888
Q ss_pred HHhcC--CCcchhhhHHHHHHHHHhccCC------CcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhH
Q 000149 547 HAINK--ESLQCEGLSVLHFFIEQLSRVS------PSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNR 618 (2037)
Q Consensus 547 saL~~--~~L~~~~l~~W~~fv~~L~~~~------~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~ 618 (2037)
.+|.. .+....++..|..++....... ......++.+++..+. . ..++...+.+..+|..|+..++
T Consensus 824 ~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~---~~~~~~~~~~~~il~~l~~~~~ 897 (963)
T 2x19_B 824 LALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIG---G---QASRSLMDCFADILFALNKHCF 897 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHT---T---TSCGGGHHHHHHHHHHHHHHSH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhc---c---cCChhHHHHHHHHHHHHHHHCh
Confidence 88853 3456678888888876532100 0123344455554442 1 1122234567778877887788
Q ss_pred HHHHhhcccC
Q 000149 619 AILKQHIHEF 628 (2037)
Q Consensus 619 ~~L~~~i~~l 628 (2037)
+.+.+++..+
T Consensus 898 ~~~~~~l~~~ 907 (963)
T 2x19_B 898 SLLSMWIKEA 907 (963)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.019 Score=59.06 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=95.1
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000149 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2037)
Q Consensus 1344 l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~ 1421 (2037)
++++.++.|-.-+....+.|.++.|.....+|....+ +.+....|..++..|+..+|+..++.+++-.|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------- 78 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--------- 78 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh---------
Confidence 5678889999999999999999999999999987754 45777889999999999999999999876211
Q ss_pred ccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000149 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2037)
Q Consensus 1422 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~ 1495 (2037)
..++++..+|.-+...|+ .+++++.|++|++++|+...++..+|+
T Consensus 79 ---------------------------~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 79 ---------------------------KFIKGYIRKAACLVAMRE--WSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------------hhhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 114567778887777665 889999999999999999888887765
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.13 Score=63.86 Aligned_cols=154 Identities=12% Similarity=0.069 Sum_probs=102.9
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhh--hhhh
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDT--VLSS 225 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~--~~~~ 225 (2037)
.-+.+.++|-++.+.+|+.....+|..+..+.+.....-....-+..+-.++.+++..||+.++..+..+..+. .-..
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~ 144 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 44557777777768899999999999999876543210011223445555668999999999999999875221 0000
Q ss_pred hccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhh--cccchhHHHHHHHHHHHhCCCCcchHHHHHH
Q 000149 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAV--DVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303 (2037)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~--~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~ 303 (2037)
++ ....+..+-+.+....++.+++..+.+++.++... ........-++-.|+..|.+.++-++..|..
T Consensus 145 ~~----------~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 214 (450)
T 2jdq_A 145 VL----------DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW 214 (450)
T ss_dssp HH----------HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred HH----------HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 11 01234555565555578899999999999996432 1112223334556788888999999999998
Q ss_pred HHHHHHhh
Q 000149 304 LIRKSCFF 311 (2037)
Q Consensus 304 ~i~~la~~ 311 (2037)
-|.++|..
T Consensus 215 ~L~~l~~~ 222 (450)
T 2jdq_A 215 ALSYLSDG 222 (450)
T ss_dssp HHHHHTSS
T ss_pred HHHHHHCC
Confidence 88888764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=96.64 E-value=0.17 Score=62.49 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=48.1
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccC-hHHHHHHhhhhhccchhh
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCH-LQAMVTHVDGLISRIPQY 1181 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq-~~~ll~~~~gl~~~~p~~ 1181 (2037)
.+.+.|++++|+.+|+++++..|++......+-.|+..+|+ ++..+...+..+...|..
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence 35678999999999999999999999888888888999997 988777776655555543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.037 Score=74.19 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=118.8
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
...++.|...+.+.++.|+++.|..+..+|.+..+ +.+....|.++...|+.++|+..++++++-.|
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P----------- 74 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP----------- 74 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------
Confidence 34578899999999999999999999999987753 45777889999999999999999999986321
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVD 1503 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~ 1503 (2037)
..+.++..+|.-+.+.|+ .+++++.|++|++++|+...+|+.+|.-|.++
T Consensus 75 -------------------------~~~~a~~nLg~~l~~~g~--~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~--- 124 (723)
T 4gyw_A 75 -------------------------TFADAYSNMGNTLKEMQD--VQGALQCYTRAIQINPAFADAHSNLASIHKDS--- 124 (723)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---
T ss_pred -------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Confidence 115678888888877775 88999999999999999999999999876422
Q ss_pred HHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcC
Q 000149 1504 ARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFG 1558 (2037)
Q Consensus 1504 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g 1558 (2037)
| -...|+.+|-+++...+++. ...-.+-.+....|
T Consensus 125 -----------g--------~~~eAi~~~~~Al~l~P~~~-~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 125 -----------G--------NIPEAIASYRTALKLKPDFP-DAYCNLAHCLQIVC 159 (723)
T ss_dssp -----------T--------CHHHHHHHHHHHHHHCSCCH-HHHHHHHHHHHHTT
T ss_pred -----------C--------CHHHHHHHHHHHHHhCCCCh-HHHhhhhhHHHhcc
Confidence 1 12368999999999887753 23334444444444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.1 Score=56.01 Aligned_cols=136 Identities=14% Similarity=0.175 Sum_probs=99.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
+.+..|+..+.+.++.|.++.|.....+|.+.. .+.+....|.++...|+..+|+..++.++...+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----------- 71 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----------- 71 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-----------
Confidence 446789999999999999999999999988775 4467788899999999999999999988653210
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2037)
.+.++..+|......++ .+.....|.++.+++|....+|+.+|..|.+.-
T Consensus 72 -------------------------~~~~~~~~~~~~~~~~~--~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g--- 121 (184)
T 3vtx_A 72 -------------------------SAEAYYILGSANFMIDE--KQAAIDALQRAIALNTVYADAYYKLGLVYDSMG--- 121 (184)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---
T ss_pred -------------------------hHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhC---
Confidence 13345555665555444 677777888888888888888888877653220
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1505 ~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
-...|+..|-+++...+.+
T Consensus 122 -------------------~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 122 -------------------EHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp -------------------CHHHHHHHHHHHHHHCTTC
T ss_pred -------------------CchhHHHHHHHHHHhcchh
Confidence 0125777777777766554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.1 Score=58.79 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=112.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++......|.|..|+-+++..+..... ....+..|..+|...++++........ ...+. ..
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPS------------SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 6788889999999999999997764211 134677899999999999988887652 11121 12
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHc--cCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQ--MEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq--~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
.....+...|+|++|..+|+++++ ..|.+......+-.|+...|+++....+.+......|.... .......+....
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~ 188 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS-VALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHc
Confidence 234567899999999999999999 77877777788888999999999888777765554443222 223445677889
Q ss_pred CChhhHHHHhhcc
Q 000149 1197 GRWDLMDEYLSGA 1209 (2037)
Q Consensus 1197 g~Wd~lee~l~~~ 1209 (2037)
|+|+...+++...
T Consensus 189 g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 189 REYVPARQYYDLF 201 (252)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999887777654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.32 Score=55.17 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=114.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-hcc---CCh---
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKS---LSL--- 1117 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-r~~---~~l--- 1117 (2037)
..|...+..|.|..|+-+++..+...+. ....+..|..+|..+++++........ ... +..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 75 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN------------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSA 75 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC------------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHH
Confidence 4677888999999999999998764321 113567889999999999988777642 111 122
Q ss_pred --hHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHh
Q 000149 1118 --QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2037)
Q Consensus 1118 --~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWr 1195 (2037)
......+...|++++|..+|+++++..|++......+-.|+..+|+++......+......|.....+..++ ...+.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~-~~~~~ 154 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG-QAYYY 154 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH-HHHHH
Confidence 345567899999999999999999999999888888899999999999998888777666665443333332 25566
Q ss_pred cCChhhHHHHhhcc
Q 000149 1196 LGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1196 lg~Wd~lee~l~~~ 1209 (2037)
.++|+...+++...
T Consensus 155 ~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 155 NKEYVKADSSFVKV 168 (272)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77888887766554
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.49 E-value=1.2 Score=60.09 Aligned_cols=509 Identities=13% Similarity=0.069 Sum_probs=251.8
Q ss_pred ccchhHHHHHHHHHHHccCCchhhhhhhhHHHH-HHHHH---hhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccch
Q 000149 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIK-CIEFL---LLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS 236 (2037)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~-~~~~~---~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (2037)
.+++|-.+--+|.||..-...|- .|+.+.+ |-+|+ +...+-+-..-+..+ +..+|.+.......
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a---------lt~i~~g~~~~~~~ 284 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDE---AKARFTDQIDEYIKDKLLAPDMESKVRVTVA---------ITALLNGPLDVGNQ 284 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHH---HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH---------HHHHHSSSHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhccch---hHHHHHHHHHHHHHHHhccCChHhHHHHHHH---------HHHHhcCCHHHHHH
Confidence 34555556666777766665552 2444442 43333 122222222233333 33445544221111
Q ss_pred -h-hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhc
Q 000149 237 -N-ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2037)
Q Consensus 237 -~-~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~ 314 (2037)
. .+-++..+-+ +...+|+.+++-.++.++.++........+.....=.|+.-|...+..+|..|..=+++++.....
T Consensus 285 ~~~~~G~v~~li~-Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~ 363 (810)
T 3now_A 285 VVAREGILQMILA-MATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQ 363 (810)
T ss_dssp HHHTTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTT
T ss_pred HHhccchHHHHHH-HhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 0 1345666665 445678889999999999986544444444444445577777788888999888877777542211
Q ss_pred cCc-ccccchhhhhhhhhhHHHHHhhcCc---hHHHHHHHHHHhCCChHHHHHhh---cccccchhhhcccc-Ch-hHHH
Q 000149 315 GGC-ELLVSKAVLICNELFDYLSVRLASR---PIMVREFAEAAFGVETEELVKKM---IPAVLPKLVVSQQD-ND-QAVN 385 (2037)
Q Consensus 315 ~~~-~l~~~~~~~~~~~l~~~~~~~l~~~---p~~~~~~~e~ll~~~~~~fL~~~---~~~~LP~LVl~~~~-~~-~~~~ 385 (2037)
.+. .-+..... ..+.+.+++-|.+. +...+.-++.|.-++.+.-.+.. ..-++|.||-.-+. |. ..-.
T Consensus 364 d~~~~~~~~g~i---~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~ 440 (810)
T 3now_A 364 DAAIRPFGDGAA---LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYG 440 (810)
T ss_dssp TTSCCSSTTTHH---HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHH
T ss_pred CccccchhhccH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHH
Confidence 111 00111111 24445555555543 33333333333333332222221 13478888864221 21 1123
Q ss_pred HHHHHHHHcCCC-----------------------------------chhHHhhhHHHHHHHHhccccH---HHHHHHHH
Q 000149 386 IINELAKCLNTD-----------------------------------MVPLIVTWIPKVLAFALHQADE---RRLLSALE 427 (2037)
Q Consensus 386 ~i~~ia~~~~~~-----------------------------------~~~l~~~~~~~Ila~ll~~~~~---~~~~~~l~ 427 (2037)
.+..+++....+ .+.++....-..|..++..+++ ++...+|.
T Consensus 441 al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~ 520 (810)
T 3now_A 441 VVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLN 520 (810)
T ss_dssp HHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333343333211 0233334455566677766554 45556665
Q ss_pred HHHhhcCCChHHHHH-hhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhh
Q 000149 428 FYCIQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRK 506 (2037)
Q Consensus 428 ~~~~~~~~~~~~~~~-~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~ 506 (2037)
-+....+ .-+.++. ..+|.++ .|+ ..++. +.+ +. ...++..++. +.++-..|-.....|.+..+-.
T Consensus 521 NLA~d~~-~r~~Vv~~Gaip~Lv-~LL---~s~~~-~~k-~~--Aa~AL~nL~~---~~~p~~~~~~~~~~~aIppLv~- 587 (810)
T 3now_A 521 AVCGLKE-LRGKVVQEGGVKALL-RMA---LEGTE-KGK-RH--ATQALARIGI---TINPEVSFSGQRSLDVIRPLLN- 587 (810)
T ss_dssp HHHTSHH-HHHHHHHTTHHHHHH-HHH---HSSCH-HHH-HH--HHHHHHHHHH---HSCHHHHTTTHHHHHTHHHHHH-
T ss_pred HHcCCHH-HHHHHHHCCCHHHHH-HHH---ccCCH-HHH-HH--HHHHHHHHhc---CCChhhhhcchhhhcHHHHHHH-
Confidence 5543211 2223333 3456665 443 33332 222 11 2334443332 2221112211234565555543
Q ss_pred hcCCC-ChHHHHHHHHHHHHHHHHh---ccc-c-ccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhH
Q 000149 507 MLHAE-DLSLQKQALKRIEILIEMI---GSH-L-TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHV 580 (2037)
Q Consensus 507 l~~~~-~~~~k~~~l~sl~~li~l~---g~~-v-~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~l 580 (2037)
+++++ +...+..++.+|..|...- ... + ..+.|++..+|.+. .+.++..|+.+...++.. ++....+
T Consensus 588 LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~--~~~Vq~~A~~~L~NLa~~-----~~~~~~~ 660 (810)
T 3now_A 588 LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--HLYLTRAAAQCLCNLVMS-----EDVIKMF 660 (810)
T ss_dssp TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC--CTTHHHHHHHHHHHHTTS-----HHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC-----hHHHHHH
Confidence 34433 4444556777776654321 111 1 24679999988863 677888888777665542 2223333
Q ss_pred H--HHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHH
Q 000149 581 I--SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLL 658 (2037)
Q Consensus 581 l--~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~ 658 (2037)
+ ...+..|+.+++.. ...+++.|...|-.|-..+....+..+.. ...+.
T Consensus 661 v~~~g~l~~Lv~LL~s~---d~~vq~~Aa~ALanLt~~s~~~~~~ii~~--------------------------~g~I~ 711 (810)
T 3now_A 661 EGNNDRVKFLALLCEDE---DEETATACAGALAIITSVSVKCCEKILAI--------------------------ASWLD 711 (810)
T ss_dssp HSSSSHHHHHHHGGGCS---SHHHHHHHHHHHHHHHHHCHHHHHHHHTS--------------------------TTHHH
T ss_pred HhccCcHHHHHHHhcCC---CHHHHHHHHHHHHHHhCCCHHHHHHHHHH--------------------------cCCHH
Confidence 3 23566777777643 23467778888887766444333211110 01233
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhc-
Q 000149 659 AAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLG- 737 (2037)
Q Consensus 659 ~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG- 737 (2037)
.+++-+.+.+..|+..|+.-|..+.....+....++.. +++..|+.-| . ..+ ..+.+|...+.+||-
T Consensus 712 ~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~------G~i~~L~~LL-~---~~d--~~~~~i~e~Al~aL~~ 779 (810)
T 3now_A 712 ILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFET------DIMELLSGLG-Q---LPD--DTRAKAREVATQCLAA 779 (810)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTS------THHHHHTTSC-C---CTT--STTHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC------CCHHHHHHHH-h---Ccc--cCcHHHHHHHHHHHHH
Confidence 44566678899999999999999988655433333222 2444433322 2 111 123577777777764
Q ss_pred --ccCccCccc
Q 000149 738 --ALGAVDPAK 746 (2037)
Q Consensus 738 --~IGalDp~r 746 (2037)
..|.+||+.
T Consensus 780 ll~~g~~~~~~ 790 (810)
T 3now_A 780 AERYRIIERSD 790 (810)
T ss_dssp HHHHHTC----
T ss_pred HHhCCCccCCC
Confidence 568888866
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.034 Score=62.03 Aligned_cols=189 Identities=9% Similarity=-0.033 Sum_probs=116.9
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCC----
Q 000149 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS---- 1116 (2037)
Q Consensus 1043 ~~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~---- 1116 (2037)
...++....+.|.|..|+-+++..+... |. ....+..+..+|...++++........- ..+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 93 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-----KE-------DAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93 (243)
T ss_dssp ----------------CCTTHHHHHTTC-----TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-----cc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHH
Confidence 3467888899999999999999977632 21 1356778999999999999888876521 1121
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
.......+...|+|++|..+|+++++..|++......+-.|+...|+++......+......|.... .......+....
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 172 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE-ARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH-HHHHHHHHHHHc
Confidence 1223456789999999999999999999998888888889999999999888877766554454322 233445677889
Q ss_pred CChhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHH
Q 000149 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSK 1252 (2037)
Q Consensus 1197 g~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR 1252 (2037)
|+|+...+++...-.. .+........+|.++ ...++..+..+.++.+.
T Consensus 173 ~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQ------DPGHADAFYNAGVTY--AYKENREKALEMLDKAI 220 (243)
T ss_dssp TCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHH--HHTTCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------CcccHHHHHHHHHHH--HHccCHHHHHHHHHHHH
Confidence 9999887777654321 011122333444433 45667666666555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.16 Score=61.65 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
....+|...|.+..+.|+++.|...+.++... +. ..+....|+++...|+..+|+..+++++.-
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34667899999999999999999988877543 22 236667899999999999999999998763
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.84 Score=63.09 Aligned_cols=392 Identities=13% Similarity=0.110 Sum_probs=177.0
Q ss_pred ccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHHhhhcccchhHH
Q 000149 202 KRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA-ADDPLILETLLESTAELMMAVDVHSQHFL 280 (2037)
Q Consensus 202 ~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~eTll~~~~~i~~~~~~~~e~~~ 280 (2037)
++=..|+|+...+.++.+. -..........++..+ -.+.. ..+|.|++|.+.++|+...-...+.+.+.
T Consensus 476 ~~w~~~eaal~~l~~iae~---------~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~ 545 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEH---------FGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP 545 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC---------------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH
T ss_pred CcHHHHHHHHHHHHHHHhh---------cChhhhHHHHHHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4556789988888885411 1111112223344422 22332 13799999999999998654444457777
Q ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHh---hcCchHHHHHHHHHHhC-C
Q 000149 281 FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR---LASRPIMVREFAEAAFG-V 356 (2037)
Q Consensus 281 ~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~---l~~~p~~~~~~~e~ll~-~ 356 (2037)
-++=.|+..|+ +-|+..|..-|.++|+.+... +.++...+.+.+...+.+. --.++...+.++. +++ +
T Consensus 546 ~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~~----l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~-i~~~~ 617 (971)
T 2x1g_F 546 PAINLLVRGLN---SSMSAQATLGLKELCRDCQLQ----LKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGK-LMSLL 617 (971)
T ss_dssp HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHH-HHHTS
T ss_pred HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH-HHHhC
Confidence 77777888883 778999999999999776532 3345444444444443331 2234455555554 333 2
Q ss_pred ChHH---HHHhhcccccchhhhcccc---C----hhHH---HHHHHHHHHcCC-------------CchhHHhhhHHHHH
Q 000149 357 ETEE---LVKKMIPAVLPKLVVSQQD---N----DQAV---NIINELAKCLNT-------------DMVPLIVTWIPKVL 410 (2037)
Q Consensus 357 ~~~~---fL~~~~~~~LP~LVl~~~~---~----~~~~---~~i~~ia~~~~~-------------~~~~l~~~~~~~Il 410 (2037)
+.++ ++....+.++..+-...+. + .... ..|-.+...++. .+.+.+..-++- +
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~-l 696 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPI-F 696 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHH-H
Confidence 2222 2323322233222111110 1 1112 233333333332 122323222222 2
Q ss_pred HHHhc-c-ccHHHHHHHHHHHHh---hcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCC
Q 000149 411 AFALH-Q-ADERRLLSALEFYCI---QTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGN 485 (2037)
Q Consensus 411 a~ll~-~-~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (2037)
-.++- . .+.+...++..++.. ..+.+ +...+|.++.-|+..+..... ..+...+..+.+.....
T Consensus 697 ~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~----~~p~l~~~~~~l~~~~~~~~~-------~~~l~l~~~~i~~~~~~ 765 (971)
T 2x1g_F 697 KRIAEMWVEEIDVLEAACSAMKHAITNLRSS----FQPMLQDLCLFIVASFQTRCC-------APTLEISKTAIVMFFKD 765 (971)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHC------CTHHHHHHHHHHHHCC--CC-------HHHHHHHHHHHTTCCC-
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHhhhhh----ccccHHHHHHHHHHHHhcCCc-------hHHHHHHHHHHHHhCCC
Confidence 22332 1 123333444433332 22211 122345555333322221111 01112222222222222
Q ss_pred CChhhhhHHHHHHHHHHhhhhhcCC------CChHHHHHHHHHHHHHHHHhcccc--ccc-hHHHHHHHHHHhc--CCCc
Q 000149 486 EDLPGFLRNHFVGLLNSIDRKMLHA------EDLSLQKQALKRIEILIEMIGSHL--TTY-VPKILVLLMHAIN--KESL 554 (2037)
Q Consensus 486 ~~~~~fl~~~~LGil~~~~~~l~~~------~~~~~k~~~l~sl~~li~l~g~~v--~~~-~pqI~a~L~saL~--~~~L 554 (2037)
+...+.+.+-+-.++..+=..+... .....++..+.=+..+++.+-.++ ++. .+.|+-+...+|. .++-
T Consensus 766 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~~~~ 845 (971)
T 2x1g_F 766 EGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGA 845 (971)
T ss_dssp ----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSCSSH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHH
Confidence 2233333333333332211111110 122334455555566666554443 355 7888888888874 3445
Q ss_pred chhhhHHHHHHHHHhccCCCcchhhHH----HHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhccc
Q 000149 555 QCEGLSVLHFFIEQLSRVSPSSTKHVI----SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHE 627 (2037)
Q Consensus 555 ~~~~l~~W~~fv~~L~~~~~~~l~~ll----~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~ 627 (2037)
...++++|..++.. .. ..+.+..++ ..++..++.-+. ...+....+.+..+|..|+..+.+....++..
T Consensus 846 ~~s~~~fl~~~i~~-~~-~~~~~~~~~~~~g~~l~~~l~~~~~--~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~ 918 (971)
T 2x1g_F 846 IRNSIQFLTHFVMQ-SR-NHAHVTEVVLATGEQTLYTAMMCVG--YLTPRSQVDKFADILLAMNRKYAAEMAVWMKS 918 (971)
T ss_dssp HHHHHHHHHHHHHH-HT-TCHHHHHHHHHHHHHHHHHHHHHHH--TTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CC-chHHHHHHHHHhHHHHHHHHHHHhc--ccCChhHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence 56789999998776 21 122333333 222323322221 11222334567788999988888777666653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.13 Score=57.29 Aligned_cols=112 Identities=17% Similarity=0.120 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHH----------------HHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHME----------------KAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE----------------~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
.+.++.-+....+.|.++.|...+.++....+ +.+... .|.++...|+.++|+..++++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45688899999999999999999999877653 345555 899999999999999999999863
Q ss_pred CCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHH
Q 000149 1411 KPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490 (2037)
Q Consensus 1411 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~ 1490 (2037)
.| . .+.++..+|.-+...|+ .++++..|.++++++|....+|
T Consensus 84 ~p-------------------~-----------------~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~ 125 (208)
T 3urz_A 84 AP-------------------N-----------------NVDCLEACAEMQVCRGQ--EKDALRMYEKILQLEADNLAAN 125 (208)
T ss_dssp CT-------------------T-----------------CHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred CC-------------------C-----------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHH
Confidence 22 1 14467777777777776 7899999999999999999999
Q ss_pred HHHHhhhH
Q 000149 1491 FYMAKYCD 1498 (2037)
Q Consensus 1491 ~~la~y~d 1498 (2037)
+.+|..|-
T Consensus 126 ~~lg~~~~ 133 (208)
T 3urz_A 126 IFLGNYYY 133 (208)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998763
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.72 Score=59.03 Aligned_cols=148 Identities=9% Similarity=0.030 Sum_probs=92.1
Q ss_pred HHHHhhcccCccchhHHHHHHHHHHHccCC-ch--hhhhhhhHHHHHHHHHhhcc-cHHHHHHHHHHHhHhhhhh--hhh
Q 000149 151 IYFEFLYDESSEEVQLSCVRVIRRILVHGT-RD--VLLKTRSEWIKCIEFLLLNK-RKAIRDAFCTQIGYFLQDT--VLS 224 (2037)
Q Consensus 151 ~~~~~l~~~~~~~v~~~~~~~l~~il~h~~-~~--~~~~~~~~w~~~~~~~~~~~-~r~vR~a~~~~~~~~~~~~--~~~ 224 (2037)
.+++.|..+ +.+++..++..|++++.+.. .. ..+. ...+.-|-.+|.++ +..||..++..+..+.... ...
T Consensus 91 ~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~--~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 91 QMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQ--AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp HHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHH--TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHH--CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 355666554 57899999999999998753 21 1111 11223333344776 8999999999999865210 100
Q ss_pred hhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHHH
Q 000149 225 SLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNAS 302 (2037)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~ 302 (2037)
.+.. ...+..+.+.+. ..|+.+++..+.+++.|........+.+. -++-.|+..|.++++.++..|.
T Consensus 168 ~~~~----------~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 236 (530)
T 1wa5_B 168 VVVD----------ADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236 (530)
T ss_dssp HHHH----------TTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHH
T ss_pred HHHH----------CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHH
Confidence 1111 112333444333 36889999999999999542111111111 1345588888888999999999
Q ss_pred HHHHHHHhhh
Q 000149 303 RLIRKSCFFH 312 (2037)
Q Consensus 303 ~~i~~la~~~ 312 (2037)
.-|.++|...
T Consensus 237 ~~L~~L~~~~ 246 (530)
T 1wa5_B 237 WTLSNLCRGK 246 (530)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhCCC
Confidence 9999998764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.66 Score=57.49 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=34.8
Q ss_pred HHHhhcCHHHHHHHHHHHHcc---------CCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000149 1123 SNKKSGNWAEVFTSCEQALQM---------EPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~---------~p~~~~~~~glL~CL~~Lgq~~~ll~~~~g 1173 (2037)
.+...|+.++|+.+|+++++. +|.......++=.++..+|+++....+.+.
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDK 119 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 356789999999999999764 333333333455577788888877665543
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=96.28 E-value=0.47 Score=61.04 Aligned_cols=104 Identities=8% Similarity=0.011 Sum_probs=69.4
Q ss_pred hhcccHHHHHHHHHHHhHhh---hhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000149 199 LLNKRKAIRDAFCTQIGYFL---QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2037)
Q Consensus 199 ~~~~~r~vR~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2037)
+.+.|..++..+...+..++ .++-++.+.. ..++-.+-+.+...+++.++....-+++.|....+.+
T Consensus 85 l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~----------~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 85 INSNNLESQLQATQAARKLLSREKQPPIDNIIR----------AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHH----------TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHH----------CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 37888888888888887766 1122222222 2245566666767788999998888888884332222
Q ss_pred chhHH--HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 276 SQHFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 276 ~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
.+.+. -++=.|+..|.++++-++-.|..-|.+||...
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~ 193 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG 193 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 22221 13456889999999999999999999997543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.23 Score=54.21 Aligned_cols=152 Identities=16% Similarity=0.096 Sum_probs=108.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++......|.|..|+.+++..+..... ....+..+..+|...++.+........ ...+. ..
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSDPK------------NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCcc------------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Confidence 5788889999999999999997764321 134567888999999999887777542 11121 12
Q ss_pred HHHHHHHhh-cCHHHHHHHHHHHHc--cCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHh
Q 000149 1119 DELLSNKKS-GNWAEVFTSCEQALQ--MEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2037)
Q Consensus 1119 ~qil~~E~~-G~W~~A~~~YE~~Lq--~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWr 1195 (2037)
.....+... |+|++|..+|+++++ ..|.+......+-.|+...|+++....+.+......|.... .......+.+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~ 159 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP-AFKELARTKML 159 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHH
Confidence 234566788 999999999999998 55666666777888899999999887777665554454322 22344567778
Q ss_pred cCChhhHHHHhhcc
Q 000149 1196 LGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1196 lg~Wd~lee~l~~~ 1209 (2037)
.|+|+.-.+++...
T Consensus 160 ~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 160 AGQLGDADYYFKKY 173 (225)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 89998877766543
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.22 E-value=2.4 Score=57.25 Aligned_cols=150 Identities=7% Similarity=0.026 Sum_probs=88.2
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhh-cccHHHHHHHHHHHhHhhhhh-hhhhhc
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLL-NKRKAIRDAFCTQIGYFLQDT-VLSSLF 227 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~-~~~r~vR~a~~~~~~~~~~~~-~~~~~~ 227 (2037)
+.+.++|. ....+|+..++.+|..|..+......+.....-+..|-.+|. +.+..+|..++..+..+-.+. ....++
T Consensus 153 p~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~ 231 (780)
T 2z6g_A 153 PELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF 231 (780)
T ss_dssp HHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 33455554 345677888888888887765422111111122333223334 448999999999998853111 011111
Q ss_pred cccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcchHHHHHHHH
Q 000149 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRLI 305 (2037)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~~~~a~~~i 305 (2037)
. ...+..+.+.+ ...|+.+++..+.+++.|+.......+.+ .-++-.|++.|.++|.-++..|..-+
T Consensus 232 ~----------~g~I~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 232 K----------SGGIPALVNML-GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 300 (780)
T ss_dssp H----------TTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred H----------cCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 12344555533 34578899999999999965422222222 12455688999999988888888888
Q ss_pred HHHHhh
Q 000149 306 RKSCFF 311 (2037)
Q Consensus 306 ~~la~~ 311 (2037)
..+|..
T Consensus 301 ~~La~~ 306 (780)
T 2z6g_A 301 QILAYG 306 (780)
T ss_dssp HHHHTT
T ss_pred HHHhcC
Confidence 777653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.08 Score=61.38 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=64.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-----hccC----
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-----HKSL---- 1115 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-----r~~~---- 1115 (2037)
+.+.....-|.|..|+.+++..+..... ++. .....+..|..+|...++++........ ....
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~--~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTE--DLK------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCS--CHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcc--cHH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 5688899999999999999998765221 110 0113566888999999999887776431 1111
Q ss_pred ---ChhHHHHHHHhhcCHHHHHHHHHHHHccCC
Q 000149 1116 ---SLQDELLSNKKSGNWAEVFTSCEQALQMEP 1145 (2037)
Q Consensus 1116 ---~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p 1145 (2037)
........|...|+|++|..+|+++++..+
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISR 114 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 112234567889999999999999886543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.11 Score=58.01 Aligned_cols=143 Identities=6% Similarity=0.001 Sum_probs=94.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccC-------
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSL------- 1115 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~------- 1115 (2037)
.++......|.|..|+-+++..+... . + ...+..+..+|..+++.+........ ...+
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~-~--~----------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH-K--D----------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-C--C----------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh-c--c----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 57888899999999999999987653 1 1 24677889999999999987776542 1111
Q ss_pred ----ChhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHH
Q 000149 1116 ----SLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQ 1191 (2037)
Q Consensus 1116 ----~l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~E 1191 (2037)
........+...|+|++|..+|+++++..|+. .++.++|+++......+......|.... .......
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~ 147 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------DILTKLRNAEKELKKAEAEAYVNPEKAE-EARLEGK 147 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh--------HHHHHHhHHHHHHHHHHHHHHcCcchHH-HHHHHHH
Confidence 11224456789999999999999999876652 3455666666666655555444443322 2223344
Q ss_pred HHHhcCChhhHHHHhhcc
Q 000149 1192 AAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1192 AAWrlg~Wd~lee~l~~~ 1209 (2037)
+....|+|+.-.+++...
T Consensus 148 ~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 556677777666655543
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.29 Score=62.65 Aligned_cols=345 Identities=13% Similarity=0.122 Sum_probs=173.4
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCC-ch--hhhhhhhHHHHHHHHHhhccc-HHHHHHHHHHHhHhhhhhhhhhhc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGT-RD--VLLKTRSEWIKCIEFLLLNKR-KAIRDAFCTQIGYFLQDTVLSSLF 227 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~-~~--~~~~~~~~w~~~~~~~~~~~~-r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2037)
+.+.|..+ ..+++...+..|++++.... .. ..+. ...+.-|-.+|.+++ ..+|..++..+..+..
T Consensus 79 lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~--~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~-------- 147 (528)
T 4b8j_A 79 MIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQ--SGVVPRFVQFLTREDFPQLQFEAAWALTNIAS-------- 147 (528)
T ss_dssp HHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHH--TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHH--CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--------
Confidence 55566544 67899999999999988765 22 1111 112223333447776 9999999999988651
Q ss_pred cccccccch--hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHHh-CCCCcchHHHHH
Q 000149 228 LDENASSRS--NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQL-DNPHVTVRMNAS 302 (2037)
Q Consensus 228 ~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L-~~~n~~~~~~a~ 302 (2037)
++. ..+. .....+..+-..+.. .++.+++..+.+++.|........+.+.- ++-.|+..| .++++.++..|.
T Consensus 148 -~~~-~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~ 224 (528)
T 4b8j_A 148 -GTS-ENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNAT 224 (528)
T ss_dssp -SCH-HHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHH
T ss_pred -CCH-HHHHHHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHH
Confidence 110 0000 001245555564544 68899999999999995322111122211 355688888 678899999999
Q ss_pred HHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcC-chHHHHHHHHHHhCC--ChHHHH-Hhhcccccchhhhccc
Q 000149 303 RLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS-RPIMVREFAEAAFGV--ETEELV-KKMIPAVLPKLVVSQQ 378 (2037)
Q Consensus 303 ~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~-~p~~~~~~~e~ll~~--~~~~fL-~~~~~~~LP~LVl~~~ 378 (2037)
.-|.++|........ .....+.+.+++-|.+ .|......|..|-.+ ..++.. .....-++|.||-.=+
T Consensus 225 ~~L~~L~~~~~~~~~--------~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 225 WTLSNFCRGKPQPSF--------EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHHHHHCSSSCCCH--------HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHcCCCCCcH--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc
Confidence 999999876522111 1113455666666653 334433333222111 122222 2223356777765322
Q ss_pred c-Ch-hHHHHHHHHHHHcCCC---chhHHhhhHHHHHHHHhccc-cHHHHHHHHHHHHhhcCCChH---HHHH-hhhHHH
Q 000149 379 D-ND-QAVNIINELAKCLNTD---MVPLIVTWIPKVLAFALHQA-DERRLLSALEFYCIQTGSDNQ---EIFA-AALPAL 448 (2037)
Q Consensus 379 ~-~~-~~~~~i~~ia~~~~~~---~~~l~~~~~~~Ila~ll~~~-~~~~~~~~l~~~~~~~~~~~~---~~~~-~~~~~~ 448 (2037)
. +. .....+..|+.....+ ...++.......|..++... .+.....+...+.+.+..+.. .++. ..+|.+
T Consensus 297 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L 376 (528)
T 4b8j_A 297 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPL 376 (528)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHH
T ss_pred CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH
Confidence 1 21 1223444444433322 22333344445555555554 444333444444444332322 2233 233444
Q ss_pred HHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHH
Q 000149 449 LDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIE 528 (2037)
Q Consensus 449 l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~ 528 (2037)
+ +++ ..++.+ .++. +..++..++.. +......+|.. .|++..|-.. +...+...+..++.+|+.|++
T Consensus 377 ~-~lL---~~~~~~-v~~~---a~~aL~nl~~~--~~~~~~~~l~~--~~~i~~L~~l-L~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 377 V-NLL---QTAEFD-IKKE---AAWAISNATSG--GSHDQIKYLVS--EGCIKPLCDL-LICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp H-HHH---HHSCHH-HHHH---HHHHHHHHHHH--SCHHHHHHHHH--TTCHHHHHHG-GGCSCHHHHHHHHHHHHHHHH
T ss_pred H-HHH---hcCCHH-HHHH---HHHHHHHHHcC--CCHHHHHHHHH--CCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHH
Confidence 4 333 223322 1111 22334333321 12222222211 1444444332 344566778888999988887
Q ss_pred Hhc
Q 000149 529 MIG 531 (2037)
Q Consensus 529 l~g 531 (2037)
...
T Consensus 444 ~~~ 446 (528)
T 4b8j_A 444 VGE 446 (528)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.061 Score=60.40 Aligned_cols=151 Identities=12% Similarity=0.056 Sum_probs=109.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++....+-|.|..|+-+++..+... |. ..+.+..|..+|...+++|........ ...|+ ..
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 77 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKEN-----PQ-------DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM 77 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-----SS-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 57788889999999999999987642 21 235677899999999999988887652 12222 11
Q ss_pred HHHHHHHhh-----------cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhH
Q 000149 1119 DELLSNKKS-----------GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCM 1187 (2037)
Q Consensus 1119 ~qil~~E~~-----------G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~ 1187 (2037)
.....+... |++++|..+|+++++..|++......+=.++..+|+++..+...+...... +. .....
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~ 155 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT-PEIRS 155 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC-HHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc-hHHHH
Confidence 234456677 999999999999999999998888888889999999998777666543322 11 22223
Q ss_pred HHHHHHHhcCChhhHHHHhhcc
Q 000149 1188 QGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1188 ~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
....+...+|+++.-.+++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~a 177 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKA 177 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 3445677889998876665543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.11 Score=58.42 Aligned_cols=131 Identities=11% Similarity=0.035 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+....+.|+++.|...+.++.... .+.+....|.++...|+..+|+..++++++-.|
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-------------- 70 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-------------- 70 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------
Confidence 4578999999999999999999999998775 456788899999999999999999999986322
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-----------GQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s-----------~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~ 1495 (2037)
.+ +.++..+|..+... |+ .++++..|++|++++|+...+|+.+|.
T Consensus 71 -----~~-----------------~~a~~~lg~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 71 -----RY-----------------LGGYMVLSEAYVALYRQAEDRERGKGY--LEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp -----TC-----------------HHHHHHHHHHHHHHHHTCSSHHHHHHH--HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred -----Cc-----------------HHHHHHHHHHHHHhhhhhhhhcccccC--HHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 10 22344444444333 33 678889999999999999999999987
Q ss_pred hhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccC
Q 000149 1496 YCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRG 1539 (2037)
Q Consensus 1496 y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g 1539 (2037)
.|... | -...|+.+|-+++...
T Consensus 127 ~~~~~--------------g--------~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 127 VYALL--------------G--------ERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHT--------------T--------CHHHHHHHHHHHHHHC
T ss_pred HHHHc--------------C--------ChHHHHHHHHHHHhcc
Confidence 65322 0 0125788888888766
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.081 Score=60.14 Aligned_cols=55 Identities=18% Similarity=0.098 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHH
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAEL 1404 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L 1404 (2037)
...|...|.+..+.|+++.|...+.++....+.+ ..+.+..++..|+..+|+..+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhhHHHH
Confidence 4679999999999999999999999998776433 345577777778777777665
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.074 Score=57.17 Aligned_cols=135 Identities=13% Similarity=0.147 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
....|...|.+..+.|.++.|...+.++.... .+.+....+...+..++...|+..++.++...|
T Consensus 38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~------------- 104 (184)
T 3vtx_A 38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNT------------- 104 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-------------
Confidence 35689999999999999999999999987664 455777889999999999999999998865321
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHH
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDAR 1505 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~ 1505 (2037)
. ...++..+|..+...|+ .+++++.|+++++++|....+|+.+|..|.+.-
T Consensus 105 ------~-----------------~~~~~~~lg~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g---- 155 (184)
T 3vtx_A 105 ------V-----------------YADAYYKLGLVYDSMGE--HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG---- 155 (184)
T ss_dssp ------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----
T ss_pred ------c-----------------chHHHHHHHHHHHHhCC--chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC----
Confidence 0 03355666776666665 788999999999999999999999998764321
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1506 ~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
-...|+.+|-+++...+++
T Consensus 156 ------------------~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 156 ------------------LRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp ------------------CHHHHHHHHHHHHHTTHHH
T ss_pred ------------------CHHHHHHHHHHHHhCCccC
Confidence 1136889999998877653
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.65 Score=64.34 Aligned_cols=376 Identities=11% Similarity=0.075 Sum_probs=192.9
Q ss_pred HHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhccc-HHHHHHHHHHHhHhhhhhhhhhhcccccc----ccchhhHHH
Q 000149 167 SCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKR-KAIRDAFCTQIGYFLQDTVLSSLFLDENA----SSRSNELKL 241 (2037)
Q Consensus 167 ~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~-r~vR~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 241 (2037)
.++..+.+.+.|...|+-.-+...|...+..+-..+. ..++..+...++.+++.-+--..|...+. .+...+..|
T Consensus 332 ~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F 411 (980)
T 3ibv_A 332 NLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEF 411 (980)
T ss_dssp HTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHH
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHH
Confidence 3788888889998877766688889877665532221 12334444444444322222223432211 122444666
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH----HHHHHH-HHhC---CCCcchHHHHHHHHHHHHhhhh
Q 000149 242 LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF----LLILLV-EQLD---NPHVTVRMNASRLIRKSCFFHL 313 (2037)
Q Consensus 242 ~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~----~l~~Li-~~L~---~~n~~~~~~a~~~i~~la~~~~ 313 (2037)
.+.+++ +. +++-+++.+ ++++..- .+--++ ..|. +++=-.+-+|.-.+..+++...
T Consensus 412 ~e~Rk~---------l~-~l~d~~~~l------~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~ 475 (980)
T 3ibv_A 412 QEMRKK---------LK-IFQDTINSI------DSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLR 475 (980)
T ss_dssp HHHHHH---------HH-HHHHHHHHH------CHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHH---------HH-HHHHHHHhc------ChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcc
Confidence 664444 55 777777766 2333322 333333 3443 2223344555556666666554
Q ss_pred ccCcccccchhhhhhhhhhHHHHHhh------cCchHHHHHHHHHHhCCChHHHHHh---hcccccchhhh-----cccc
Q 000149 314 KGGCELLVSKAVLICNELFDYLSVRL------ASRPIMVREFAEAAFGVETEELVKK---MIPAVLPKLVV-----SQQD 379 (2037)
Q Consensus 314 ~~~~~l~~~~~~~~~~~l~~~~~~~l------~~~p~~~~~~~e~ll~~~~~~fL~~---~~~~~LP~LVl-----~~~~ 379 (2037)
..+... .......+++.++++.-+ ..+|..-...|+ ++| .+.+++.. .++.+|+.++- .+..
T Consensus 476 ~~~~~~--~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~-~l~-rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~ 551 (980)
T 3ibv_A 476 GPDAFF--NEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME-ILV-RYASFFDYESAAIPALIEYFVGPRGIHNTNE 551 (980)
T ss_dssp SGGGTB--CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH-HHH-HTGGGGGTCCTTHHHHHHHHTSTTTTTCCCT
T ss_pred cccccc--CcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH-HHH-HHHHHHhcCchhHHHHHHHHhccccccCCCh
Confidence 432221 111111245666665543 578888777776 665 34444432 23445555444 1211
Q ss_pred Ch--hHHHHHHHHHHHcCCCchhHHhhhHHHHHHHH---hcc-----ccH-------------------HHHHHHHHHHH
Q 000149 380 ND--QAVNIINELAKCLNTDMVPLIVTWIPKVLAFA---LHQ-----ADE-------------------RRLLSALEFYC 430 (2037)
Q Consensus 380 ~~--~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~l---l~~-----~~~-------------------~~~~~~l~~~~ 430 (2037)
.. .+...+..+++..+..+. +++..|+..+ +.- .+. -.+.+++..+.
T Consensus 552 ~V~~~a~~af~~f~~~~~~~L~----~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li 627 (980)
T 3ibv_A 552 RVRPRAWYLFYRFVKSIKKQVV----NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLI 627 (980)
T ss_dssp TTHHHHHHHHHHHHHHTTTTCS----SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHHhh----hHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHH
Confidence 11 144788888888876554 4555566554 331 111 12677887777
Q ss_pred hhcCCCh---HHHHHhhhHHHHHHHHHhhcCCCch-HHhhhhcchhHHH---HHHhhhcCCC-CChhhhhHHHHHHHHHH
Q 000149 431 IQTGSDN---QEIFAAALPALLDELICFVDGGDSD-EINERLNRVPRVI---RKVSTVLTGN-EDLPGFLRNHFVGLLNS 502 (2037)
Q Consensus 431 ~~~~~~~---~~~~~~~~~~~l~ell~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~fl~~~~LGil~~ 502 (2037)
...+.+. .+.+...++.++..+-..+....++ +.. +.+...+ ..+++-..+. ..... ....|.-++..
T Consensus 628 ~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~---~~i~~~i~al~~lakgf~~~~~~~~p-~~~~f~~~~~~ 703 (980)
T 3ibv_A 628 SSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENI---ISVYCSLMAIGNFAKGFPARGSEEVA-WLASFNKASDE 703 (980)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHH---HHHHHHHHHHHHHHHTSCSCC-CCCS-HHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHH---HHHHHHHHHHHHHhccCCcccCCCCc-HHHHHHHHHHH
Confidence 6655433 3345666666665554333222111 111 1232333 3444433221 11111 22333333333
Q ss_pred hhhhhcC-CCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhcc
Q 000149 503 IDRKMLH-AEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSR 571 (2037)
Q Consensus 503 ~~~~l~~-~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~ 571 (2037)
+-..+.. +++...+.++-.++..||..+|.++.+++|+++..|.+..+..++. .-+..-..+|+...+
T Consensus 704 il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~-~fL~l~~qli~~f~~ 772 (980)
T 3ibv_A 704 IFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELV-DVLSFISQLIHIYKD 772 (980)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHH-HHHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHHH
Confidence 3222211 2346678889999999999999999999999999999766655532 223344446666543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.09 Score=51.95 Aligned_cols=116 Identities=11% Similarity=0.020 Sum_probs=93.4
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
......|...+......|.++.|...+.++.... .+.+....|.++...|+..+|+..++.++...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----------- 77 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP----------- 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-----------
Confidence 3456789999999999999999999999987664 345777889999999999999999999876311
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~ 1499 (2037)
. .+.++..+|......|+ .+++.+.|.++++++|....+|+.+|..+.+
T Consensus 78 --------~-----------------~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 78 --------A-----------------YSKAYGRMGLALSSLNK--HVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp --------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred --------c-----------------CHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 0 03456677777766665 7889999999999999988899888877643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.21 Score=56.65 Aligned_cols=93 Identities=5% Similarity=0.042 Sum_probs=64.3
Q ss_pred HHcCChHHHHHHHHHHhhcCCC-hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcc
Q 000149 1360 RLAGHYETATRAILEAQASGAP-NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVL 1438 (2037)
Q Consensus 1360 RKag~~~~A~~aLl~a~~~~~p-~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 1438 (2037)
.+.|.++.|...+.++....++ ......+.+....++..+|+..++..+...+
T Consensus 155 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------- 208 (275)
T 1xnf_A 155 EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNT-------------------------- 208 (275)
T ss_dssp HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHH--------------------------
T ss_pred HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccc--------------------------
Confidence 4457788888777666544322 2334467777788888889998888754210
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000149 1439 SNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1439 ~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
...+..+.++..+|......|+ .+++...|+++++++|..
T Consensus 209 ------~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 209 ------SLAEHLSETNFYLGKYYLSLGD--LDSATALFKLAVANNVHN 248 (275)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCCTT
T ss_pred ------cccccccHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCchh
Confidence 0112336778888888877775 889999999999999953
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.07 E-value=6.5 Score=53.05 Aligned_cols=149 Identities=12% Similarity=0.066 Sum_probs=88.1
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2037)
..+.+.+.|-.+ +++++-++...|+.+ .+..+. .+-|-.-+ .+|.+++..||+.+..++..+-.+.--...+
T Consensus 116 ~i~~lv~~L~~~-~~~~r~~a~~~l~~~-----~~~~i~-~g~ip~Lv-~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 116 AHPTNVQRLAEP-SQMLKHAVVNLINYQ-----DDAELA-TRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp ----------CC-SCHHHHHHHHHHHHH-----HHHHHH-HHHHHHHH-HHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred cHHHHHHHhcCc-cHHHHHHHHHHHHhh-----hHHHHH-hCCHHHHH-HHHCCCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 334455666554 677887777766643 122222 23333333 3458999999999999998864211100000
Q ss_pred cccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH-HHHHHHHHHhCCCCcchHHHHHHHHH
Q 000149 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIR 306 (2037)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~-~~l~~Li~~L~~~n~~~~~~a~~~i~ 306 (2037)
. ....++..+-+.+...+|+.+++....++..+.........+.. -++-.|++.|.++++-++..|..-|.
T Consensus 188 ~--------~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 188 M--------RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLH 259 (780)
T ss_dssp T--------TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred H--------hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0 01246667777776677999999999999887432211111111 13456899999999999999999999
Q ss_pred HHHhhh
Q 000149 307 KSCFFH 312 (2037)
Q Consensus 307 ~la~~~ 312 (2037)
++|...
T Consensus 260 nLa~~~ 265 (780)
T 2z6g_A 260 NLLLHQ 265 (780)
T ss_dssp HHHHHS
T ss_pred HHhCCC
Confidence 998764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.23 Score=55.41 Aligned_cols=120 Identities=13% Similarity=0.061 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
..|...+.+..+.|.++.|...+.+|....+. .+....|.++...|+..+|+..++++++..|
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--------------- 107 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP--------------- 107 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------------
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---------------
Confidence 46777899999999999999999999877654 4677899999999999999999999986322
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc--hHHHHHHHHhhhHHH
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM--WEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~--weK~~~~la~y~d~l 1500 (2037)
.++ .-....+.++..+|......|+ .+++++.|++|++++|. ...+|+.+|..|-..
T Consensus 108 ----~~~----------~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 108 ----GNA----------TIEKLYAIYYLKEGQKFQQAGN--IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp ----TCH----------HHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ----CcH----------HHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 100 0112456788999999887776 89999999999999999 899999999876544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.084 Score=51.23 Aligned_cols=112 Identities=10% Similarity=-0.065 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
....|...+......|.++.|...+.++.... .+.+....|.+++..|+..+|+..++++++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------- 69 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------------- 69 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-------------
Confidence 35679999999999999999999999987664 456778889999999999999999999876311
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
. .+.++..+|..+...|+ .+++.+.|.++++.+|....+|+.+|+..
T Consensus 70 ------~-----------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 70 ------D-----------------WGKGYSRKAAALEFLNR--FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ------c-----------------cHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 0 13456667776666664 78899999999999999998888887653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.12 Score=51.42 Aligned_cols=115 Identities=10% Similarity=0.073 Sum_probs=93.1
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
......|...|....+.|.++.|...+.++.... .+.+....|.++...|+.++|+..++++++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~----------- 81 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP----------- 81 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----------
Confidence 4557789999999999999999999999987764 345777889999999999999999999876311
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
. .+.++..+|.-....|+ .+++++.|.++++.+|....+++.+|..+.
T Consensus 82 --------~-----------------~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 82 --------T-----------------FIKGYTRKAAALEAMKD--YTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp --------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred --------C-----------------chHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 0 13456666766666654 788999999999999999999998887654
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=95.91 E-value=2 Score=54.97 Aligned_cols=108 Identities=7% Similarity=0.001 Sum_probs=73.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHhHhh---hhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 000149 194 CIEFLLLNKRKAIRDAFCTQIGYFL---QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMM 270 (2037)
Q Consensus 194 ~~~~~~~~~~r~vR~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~ 270 (2037)
.|..+ .+.|..++..+...++.++ .|+-++.+...| .+-.+-+.|...+++.+|+-..-+++.|..
T Consensus 62 ~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G----------~ip~LV~lL~~~~~~~lq~~Aa~aL~nias 130 (510)
T 3ul1_B 62 IVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAG----------LIPKFVSFLGKTDCSPIQFESAWALTNIAS 130 (510)
T ss_dssp HHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTT----------HHHHHHHHTTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCC----------CHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 44445 9999999999999998876 222222222222 355666666677889999988888888843
Q ss_pred hhcccchhHH--HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 271 AVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 271 ~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
+.+.+...+. -++=.|+..|.++++-++-.|..-|.+||...
T Consensus 131 ~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 131 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174 (510)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 2222222221 13456899999999999999999999997543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.013 Score=62.18 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=82.0
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCC
Q 000149 1356 AKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLN 1433 (2037)
Q Consensus 1356 AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~ 1433 (2037)
+.+.|..|.++.|..++.++.... .+...+..|+++...|+.++|+..++++++..|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--------------------- 62 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--------------------- 62 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------
Confidence 445677788889999888886543 233566789999999999999999999886321
Q ss_pred CCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1434 PLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1434 ~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
..+.++..+|......|+ .++++..|++|++++|+...+|+.+|..|-
T Consensus 63 ---------------~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 63 ---------------RDPKAHRFLGLLYELEEN--TDKAVECYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---------------CCHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 115578888888877775 889999999999999999999999998764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.11 Score=54.66 Aligned_cols=151 Identities=10% Similarity=0.017 Sum_probs=110.9
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~----l~ 1118 (2037)
.++......|.|..|+.+++..+... | .....+..+..+|...++++......... ..++ ..
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 80 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-----A-------FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-----S-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-----c-------cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 56788889999999999998865432 1 12356778999999999999887776521 1121 12
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
.....+...|+|++|..+|+++++..|++......+-.|+...|+++......+......|... ........+....|+
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG-KVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHcCC
Confidence 2345678899999999999999999999888888888999999999988877776655445432 223344567788899
Q ss_pred hhhHHHHhhc
Q 000149 1199 WDLMDEYLSG 1208 (2037)
Q Consensus 1199 Wd~lee~l~~ 1208 (2037)
|+...+++..
T Consensus 160 ~~~A~~~~~~ 169 (186)
T 3as5_A 160 HEEALPHFKK 169 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9887766543
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.77 E-value=8.1 Score=50.66 Aligned_cols=149 Identities=9% Similarity=0.064 Sum_probs=92.5
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhhc-ccHHHHHHHHHHHhHhhhhh-hhhhh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLLN-KRKAIRDAFCTQIGYFLQDT-VLSSL 226 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~~-~~r~vR~a~~~~~~~~~~~~-~~~~~ 226 (2037)
+.+.++|.+ ...+|+..++..|.++..+...- ..... ...+..|-.+|.+ ++..+|.++++++..+-.+. ....+
T Consensus 17 ~~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~~~i~~~-~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 17 PELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp HHHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHHHHHTTC-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHCCChhHHHHHhc-cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 335566664 46689999999999999887522 11111 1233333333354 48999999999998764211 11112
Q ss_pred ccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcchHHHHHHH
Q 000149 227 FLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRL 304 (2037)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~~~~a~~~ 304 (2037)
+. ...+..+-+.+ ...|+.+++..+.+++.|........+.+ .-++-.|++.|.++|+-++..|..-
T Consensus 95 ~~----------~g~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 95 FK----------SGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp HT----------TTHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred HH----------cCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 21 12344455533 34678899999999999854321122111 1245569999999999888888888
Q ss_pred HHHHHhh
Q 000149 305 IRKSCFF 311 (2037)
Q Consensus 305 i~~la~~ 311 (2037)
|.++|..
T Consensus 164 L~~La~~ 170 (644)
T 2z6h_A 164 LQILAYG 170 (644)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 8888753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.1 Score=69.87 Aligned_cols=150 Identities=11% Similarity=0.103 Sum_probs=115.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.|+..-.+-|.|..|+-++++.+.-..+ ....+..|..+|..+++.|.+.-.... ...++ ..
T Consensus 14 nLG~~~~~~G~~~eAi~~~~kAl~l~P~------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 14 NLANIKREQGNIEEAVRLYRKALEVFPE------------FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSC------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 5788889999999999999998765321 135678899999999999988777542 22222 22
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
.....+...|++++|..+|+++++..|++.+.+.++=.++.++|+++..+...+..+...|+...-+. ....+-..+|+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~-~L~~~l~~~g~ 160 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC-NLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHh-hhhhHHHhccc
Confidence 34567889999999999999999999999999988889999999999988887776665665433332 33456778999
Q ss_pred hhhHHHHhh
Q 000149 1199 WDLMDEYLS 1207 (2037)
Q Consensus 1199 Wd~lee~l~ 1207 (2037)
|+...+...
T Consensus 161 ~~~A~~~~~ 169 (723)
T 4gyw_A 161 WTDYDERMK 169 (723)
T ss_dssp CTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 988766543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.064 Score=63.44 Aligned_cols=147 Identities=13% Similarity=0.060 Sum_probs=109.5
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhc--cCChh-HH
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK--SLSLQ-DE 1120 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~--~~~l~-~q 1120 (2037)
..++....+-|.|..|+-+++. .. ..+.+-.+..+|..++++|........-. .++-. -+
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~-----~~------------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 167 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQ-----GD------------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ 167 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTT-----CC------------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhC-----CC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHH
Confidence 4677888999999999999876 11 12466788999999999999888865321 22211 11
Q ss_pred H-----HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHh
Q 000149 1121 L-----LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2037)
Q Consensus 1121 i-----l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWr 1195 (2037)
+ ..+...|++++|..+|+.+++..|++.....++-.|+..+|+|+......+..+...|+....+..+ ..+.+.
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l-~~~~~~ 246 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL-VVLSQH 246 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHH
Confidence 1 1123459999999999999999999998888889999999999998888887776667655544444 357788
Q ss_pred cCChhh-HHHHhhc
Q 000149 1196 LGRWDL-MDEYLSG 1208 (2037)
Q Consensus 1196 lg~Wd~-lee~l~~ 1208 (2037)
.|+++. ..+++.+
T Consensus 247 ~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 247 LGKPPEVTNRYLSQ 260 (291)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 999964 5666554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.72 E-value=8.3 Score=54.46 Aligned_cols=331 Identities=15% Similarity=0.088 Sum_probs=191.7
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHH-HHHHHhhCCChHHHHHHHHHhccCChhHHHHHHH
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSF-LMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNK 1125 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~-L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~E 1125 (2037)
+++=+.-|.|+.||-.+|.-+.+.+... ....++. |+...-..|-..+++-+.+.- .....+-....+
T Consensus 992 vKaf~~aglp~EaieLLEKivl~~s~fs----------~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd-~~d~~eIA~Iai 1060 (1630)
T 1xi4_A 992 VKAFMTADLPNELIELLEKIVLDNSVFS----------EHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAPDIANIAI 1060 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHHHcCCCccc----------ccHHHHHHHHHHHHHhChhhHHHHHHHhh-hccHHHHHHHHH
Confidence 3333478899999999999774422000 0112222 333333334444555554433 344555566778
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHH-HHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHHH
Q 000149 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNC-LLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDE 1204 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~C-L~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~lee 1204 (2037)
+.|++++|.++|+++- ... .-+.- +.++|+|+....+++.... | .-|+.+| .|-=..|+|+.--+
T Consensus 1061 ~lglyEEAf~IYkKa~-----~~~---~A~~VLie~i~nldrAiE~Aervn~--p---~vWsqLA-KAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD-----VNT---SAVQVLIEHIGNLDRAYEFAERCNE--P---AVWSQLA-KAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcC-----CHH---HHHHHHHHHHhhHHHHHHHHHhcCC--H---HHHHHHH-HHHHhCCCHHHHHH
Confidence 9999999999999852 111 11222 3378999998888875421 2 3344332 33334788866544
Q ss_pred HhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhh-HHhhhHHHHHhhhHHHH
Q 000149 1205 YLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDS-YTRAYPFIVKLHLLQEL 1283 (2037)
Q Consensus 1205 ~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eS-y~r~y~~l~kLh~L~EL 1283 (2037)
....++ +.+....++.+ +.+.++.++.-+.+.++|...-.+- .++ ..-+| -++..+.|+
T Consensus 1127 sYiKAd-----------D~say~eVa~~--~~~lGkyEEAIeyL~mArk~~~e~~----Idt~LafaY---AKl~rleel 1186 (1630)
T 1xi4_A 1127 SYIKAD-----------DPSSYMEVVQA--ANTSGNWEELVKYLQMARKKARESY----VETELIFAL---AKTNRLAEL 1186 (1630)
T ss_pred HHHhcC-----------ChHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhccccc----ccHHHHHHH---HhhcCHHHH
Confidence 333222 12233344444 4556788888888888876431110 011 11111 233455566
Q ss_pred HHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHHHHHcC
Q 000149 1284 EDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAG 1363 (2037)
Q Consensus 1284 ee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~AklARKag 1363 (2037)
+++.+ . .. ...+. .|-.|+...+..-.... -..+ +..|.+.|+.--+.|
T Consensus 1187 e~fI~---~---------~n---~ad~~-~iGd~le~eg~YeeA~~---~Y~k------------A~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1187 EEFIN---G---------PN---NAHIQ-QVGDRCYDEKMYDAAKL---LYNN------------VSNFGRLASTLVHLG 1235 (1630)
T ss_pred HHHHh---C---------CC---HHHHH-HHHHHHHhcCCHHHHHH---HHHh------------hhHHHHHHHHHHHhC
Confidence 65532 1 11 12233 47777776665433322 1221 357999999999999
Q ss_pred ChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCccccccc
Q 000149 1364 HYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQT 1443 (2037)
Q Consensus 1364 ~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~ 1443 (2037)
.++.|..+..+| +.+.+-.|.+-..-..|+.+.|.......+.
T Consensus 1236 e~q~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv---------------------------------- 1278 (1630)
T 1xi4_A 1236 EYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---------------------------------- 1278 (1630)
T ss_pred CHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc----------------------------------
Confidence 999999999988 3455545555556667777777775443211
Q ss_pred chhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1444 LNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1444 ~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
.+..+.-+++|+...|. .++++..|.+++.+++.+.-.|..+|..|-
T Consensus 1279 ------~~deLeeli~yYe~~G~--feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1279 ------HADELEELINYYQDRGY--FEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred ------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 02233456677766665 889999999999999887777777765553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.19 Score=49.01 Aligned_cols=111 Identities=16% Similarity=0.183 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+....+.|.++.|...+.++.... .+.+....|.++...|+.++|+..++.++...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-------------- 74 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------------- 74 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--------------
Confidence 6789999999999999999999999987664 345677889999999999999999998875211
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
. ...++..+|......++ .+++.+.|.++.+.+|....+++.+|..+
T Consensus 75 -----~-----------------~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 75 -----N-----------------NAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp -----T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -----c-----------------cHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 0 02345566666666554 78899999999999999988888887654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.09 Score=55.78 Aligned_cols=113 Identities=9% Similarity=-0.022 Sum_probs=93.2
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccc
Q 000149 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAIS 1422 (2037)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~ 1422 (2037)
+...+..|...+....+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.++...+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------- 76 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP---------- 76 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------
Confidence 34567889999999999999999999999998775 456778899999999999999999999876321
Q ss_pred cccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000149 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2037)
Q Consensus 1423 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~ 1495 (2037)
..+.++..+|.-+...|+ .+++++.|+++++++|+...+|+..|.
T Consensus 77 --------------------------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 77 --------------------------KYSKAWSRLGLARFDMAD--YKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp --------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred --------------------------CCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 014567777877777665 889999999999999999888877663
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.16 Score=51.06 Aligned_cols=111 Identities=11% Similarity=-0.039 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
.+..|...+....+.|.++.|.....+|....+ +.+....|..+...|+..+|+..++.++...|
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------------- 69 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------------- 69 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------------
Confidence 467899999999999999999999999887654 46777889999999999999999999876321
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------cchHHHHHHHHhh
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQ------PMWEKGYFYMAKY 1496 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~------~~weK~~~~la~y 1496 (2037)
. .++++..+|.-+...|+ .++++..|+++++++ |.....+..+++.
T Consensus 70 ------~-----------------~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 70 ------N-----------------FVRAYIRKATAQIAVKE--YASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp ------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred ------C-----------------cHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 0 14467777777766665 788999999999999 7666666666544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.19 Score=51.16 Aligned_cols=113 Identities=17% Similarity=0.048 Sum_probs=90.6
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
......|...|..+.+.|.++.|...+.++....+ +.+....|..+...|+..+|+..++.++...+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-------- 96 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-------- 96 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--------
Confidence 45578899999999999999999999999987754 35677789999999999999999998876311
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
. .+.++..+|..+...++ .+++.+.|+++++++|.....+..+++.
T Consensus 97 -----------~-----------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 97 -----------G-----------------DVKALYRRSQALEKLGR--LDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp -----------C-----------------CHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred -----------c-----------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 0 03456667776666665 7889999999999999988887766654
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.23 Score=56.80 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=109.5
Q ss_pred ChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh
Q 000149 144 DFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL 223 (2037)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~ 223 (2037)
+|.++-+.+.++|-+.....|+-+...+|..+.++...+. ..-....+.+|-..+.|++..||.+++.++..++++.
T Consensus 53 ~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~-~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-- 129 (242)
T 2qk2_A 53 EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF-SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-- 129 (242)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--
Confidence 3555666666666435677788899999999998766442 1111233445555569999999999999999987321
Q ss_pred hhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHHHhCCCCcchHHH
Q 000149 224 SSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD---VHSQHFLFLLILLVEQLDNPHVTVRMN 300 (2037)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~---~~~e~~~~~l~~Li~~L~~~n~~~~~~ 300 (2037)
.-..++..+..++.. ++|++++.++..++.+..... .....+...+=.|+..|..+++-||..
T Consensus 130 -------------~~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~ 195 (242)
T 2qk2_A 130 -------------SLEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDS 195 (242)
T ss_dssp -------------CHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred -------------CHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 124577788887764 689999999999999754431 122334445556999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 000149 301 ASRLIRKSCFFHL 313 (2037)
Q Consensus 301 a~~~i~~la~~~~ 313 (2037)
|..-|-.+++.-.
T Consensus 196 A~~~l~~l~~~vg 208 (242)
T 2qk2_A 196 SAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999987763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.40 E-value=3.4 Score=48.55 Aligned_cols=110 Identities=9% Similarity=0.002 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChH--HHHHH--HHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPNV--HMEKA--KLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~--~iE~A--KLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
.+|...+.+..+.|+++.|...+.++....+... .+-.+ .++-..|+..+|+..++++++..|
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p------------- 197 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS------------- 197 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-------------
Confidence 4566777777777888888777777766543332 22222 333334667777777777765321
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
. .+.++..+|..+...|+ .+++...|.+|++++|....+|+.+|..+
T Consensus 198 ------~-----------------~~~~~~~la~~~~~~g~--~~eA~~~l~~al~~~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 198 ------P-----------------TLLLLNGQAACHMAQGR--WEAAEGVLQEALDKDSGHPETLINLVVLS 244 (291)
T ss_dssp ------C-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ------C-----------------cHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 0 02344445555555554 67777778888888887777777777654
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=95.26 E-value=16 Score=50.82 Aligned_cols=101 Identities=11% Similarity=0.052 Sum_probs=68.3
Q ss_pred ccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhh---c-----CChhHHHHHHHHHHHHHhhhc
Q 000149 202 KRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA---A-----DDPLILETLLESTAELMMAVD 273 (2037)
Q Consensus 202 ~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~d~~i~eTll~~~~~i~~~~~ 273 (2037)
.+-..|+|++..++++-+ + .....+..++..+-..+.. . .+|.++-|.+.++|+...-..
T Consensus 465 ~~W~~~eaal~algsia~----------~--~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~ 532 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISG----------T--MSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLK 532 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTT----------S--SCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc----------c--cCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 455668999888887431 1 1111112334444433322 1 346667788899998754333
Q ss_pred ccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhc
Q 000149 274 VHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2037)
Q Consensus 274 ~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~ 314 (2037)
.+.+.+.-++-.|++.|.++|+.|+..|...|.++|+.+.+
T Consensus 533 ~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46778878888899999999999999999999999987754
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=95.22 E-value=12 Score=49.08 Aligned_cols=130 Identities=10% Similarity=-0.025 Sum_probs=86.8
Q ss_pred ccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHH
Q 000149 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELK 240 (2037)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (2037)
.-+.+-.++-.+..+++..+ |+. .--+-++..-+.|++..+|-.|-+++..+-... --+.
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~-e~~----~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e---------------~~~~ 146 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNS-ELI----RLINNAIKNDLASRNPTFMGLALHCIANVGSRE---------------MAEA 146 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCH-HHH----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH---------------HHHH
T ss_pred CHHHHHHHHHHHHHHccCCc-HHH----HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHH---------------HHHH
Confidence 33444445555555544332 311 112245666679999999999999999864111 1245
Q ss_pred HHHHHHHHhh-hcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhh
Q 000149 241 LLDVIKLAFT-AADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHL 313 (2037)
Q Consensus 241 ~~~~~~~~~~-~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~ 313 (2037)
++..+++.+. .-.+|-|.-+...++..+.+- ..|+.. -.+=.|.+-|+.+|+.|.+.|...+..+|+...
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~---~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRT---SPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH---CGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh---ChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 6667777663 356888999999999999662 344443 334556777789999999999999999988653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.45 Score=52.92 Aligned_cols=140 Identities=11% Similarity=-0.059 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-C--hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA-P--NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-p--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
...|...+....+.|.++.|.....++....+ + .+....|..+...|+..+|+..++++++..|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------- 73 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY------------- 73 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-------------
Confidence 36899999999999999999999999887654 3 4566689999999999999999999876321
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHH
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDAR 1505 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~ 1505 (2037)
..+.++..+|.-+...|+ .+++++.|+++++++|.....+..++..+..+-.-..
T Consensus 74 -----------------------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 74 -----------------------NLANAYIGKSAAYRDMKN--NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ 128 (228)
T ss_dssp -----------------------SHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------chHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence 124567777877766665 7899999999999999877443333332222210000
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCc
Q 000149 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2037)
Q Consensus 1506 ~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~ 1541 (2037)
. .| -...|+..|-+++...+.
T Consensus 129 ~-------~~--------~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 129 Q-------AG--------NIEKAEENYKHATDVTSK 149 (228)
T ss_dssp H-------TT--------CHHHHHHHHHHHTTSSCH
T ss_pred H-------hc--------cHHHHHHHHHHHHhcCCC
Confidence 0 11 124699999999998766
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.43 Score=54.51 Aligned_cols=112 Identities=11% Similarity=0.032 Sum_probs=86.4
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
......++..|....+.|.++.|...+.++....+ +.+.+..|..++..|+..+|+..++..++..|
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-------- 83 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-------- 83 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC--------
Confidence 34567899999999999999999999999877642 45778899999999999999999999987432
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccchHHHH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG------QKQKEDVITLYSRVRELQPMWEKGY 1490 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~------~~~~~~i~~~Y~~A~~l~~~weK~~ 1490 (2037)
.+ +..+.++..+|.-....+ ..+.++++..|+++++.+|....++
T Consensus 84 -----------~~--------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 84 -----------ID--------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp -----------TC--------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred -----------CC--------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 11 122456677777665511 3347889999999999999876555
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=4.5 Score=53.02 Aligned_cols=105 Identities=15% Similarity=0.086 Sum_probs=65.6
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 000149 192 IKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMA 271 (2037)
Q Consensus 192 ~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~ 271 (2037)
+.-|..++.|++..||.+|+.++..+.... . ...+.++..+.+.+. -+||.|+-..+..+++|+..
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-----------p--~~v~~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKV-----------P--ELMEMFLPATKNLLN-EKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-----------G--GGGGGGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-----------h--HHHHHHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHh
Confidence 345566679999999999999999875210 0 111356667777554 47888999999999998532
Q ss_pred hcccchhH---HHHHHHHHHHh------------CCCCcchHHHHHHHHHHHHh
Q 000149 272 VDVHSQHF---LFLLILLVEQL------------DNPHVTVRMNASRLIRKSCF 310 (2037)
Q Consensus 272 ~~~~~e~~---~~~l~~Li~~L------------~~~n~~~~~~a~~~i~~la~ 310 (2037)
.....+.+ .-.++.++.++ |.+++.+.....+-+-.++.
T Consensus 210 ~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~ 263 (618)
T 1w63_A 210 SPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGR 263 (618)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCC
Confidence 11000111 11234444443 34678888877776666654
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.17 E-value=6.5 Score=51.59 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=69.0
Q ss_pred HHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccch---hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc
Q 000149 197 FLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS---NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD 273 (2037)
Q Consensus 197 ~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~ 273 (2037)
.+|.+++..||..++..+..+-.+. ..+. .....+..+-+.+...+|+.+++....++..+.....
T Consensus 21 ~lL~~~~~~vr~~A~~~L~~La~~~-----------~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 21 KLLNDEDQVVVNKAAVMVHQLSKKE-----------ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTST-----------THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCC-----------hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 3457888889999888888854111 1111 0123455666666666788898888888887643221
Q ss_pred ccchhHH-HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 274 VHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 274 ~~~e~~~-~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
....+.. -++-.|++.|.++++.++..|..-|.++|...
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~ 129 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Confidence 1111111 14456899999999999999999999998764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.36 Score=52.83 Aligned_cols=116 Identities=12% Similarity=-0.056 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CC----------------hHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--AP----------------NVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p----------------~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
..+..|...+..+.+.|.++.|.....+|.... .+ .+....|..+...|+..+|+..++.++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456779999999999999999999999987653 34 567788999999999999999999987
Q ss_pred hcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000149 1409 LNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2037)
Q Consensus 1409 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK 1488 (2037)
...+ ..++++..+|..+...|+ .+++++.|+++++++|....
T Consensus 116 ~~~p------------------------------------~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 116 KIDK------------------------------------NNVKALYKLGVANMYFGF--LEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHST------------------------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCHH
T ss_pred HhCc------------------------------------ccHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHH
Confidence 6211 114567777777777765 78899999999999999999
Q ss_pred HHHHHHhhhHHH
Q 000149 1489 GYFYMAKYCDDV 1500 (2037)
Q Consensus 1489 ~~~~la~y~d~l 1500 (2037)
++..++..+..+
T Consensus 158 ~~~~l~~~~~~~ 169 (198)
T 2fbn_A 158 IRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877655
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.13 Score=54.34 Aligned_cols=114 Identities=16% Similarity=0.098 Sum_probs=88.8
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
.+....|+..|++..+.|.++.|...+.+|...+ .+.+....+.++...|+.++|+..++.+++-.|
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p----------- 96 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP----------- 96 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-----------
Confidence 3455678999999999999999999999998775 456788899999999999999999999886321
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHhccchHHHHHHHHhhh
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITL-YSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~-Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
. -+.++..+|..+...++. ++..+. +++|++++|+...+|...++.+
T Consensus 97 --------~-----------------~~~~~~~la~~~~~~~~~--~~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 97 --------T-----------------QKDLVLKIAELLCKNDVT--DGRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp --------T-----------------CHHHHHHHHHHHHHHCSS--SSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred --------C-----------------CHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 1 144677778777777763 233444 5899999999988877666654
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.38 Score=55.88 Aligned_cols=183 Identities=11% Similarity=0.149 Sum_probs=112.9
Q ss_pred CCCChHHHHHHHHHHHH-HHHHhcccc--ccchHHHHHHHHHHhc-CC--CcchhhhHHHHHHHHHhccCCCcchh-hHH
Q 000149 509 HAEDLSLQKQALKRIEI-LIEMIGSHL--TTYVPKILVLLMHAIN-KE--SLQCEGLSVLHFFIEQLSRVSPSSTK-HVI 581 (2037)
Q Consensus 509 ~~~~~~~k~~~l~sl~~-li~l~g~~v--~~~~pqI~a~L~saL~-~~--~L~~~~l~~W~~fv~~L~~~~~~~l~-~ll 581 (2037)
.+.+-.+|+.++.+|.. +++=+...+ ..-..+++..|...|. .. ..+..++.|...|...|.. ..+. ++.
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~---~~f~~~y~ 102 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT---PGFSKDYV 102 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT---TTSCHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---ccccHHHH
Confidence 44567788888888777 764221222 2233588888999993 43 3688999999999988851 2476 788
Q ss_pred HHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000149 582 SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2037)
Q Consensus 582 ~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2037)
..++..++..+. +.....++.+..-++.++. ++... .+. ..+..-+..+.
T Consensus 103 ~~llp~ll~~l~---dkk~~V~~aa~~al~~i~~--------~~~~~--~~~-----------------~~l~~ll~~l~ 152 (249)
T 2qk1_A 103 SLVFTPLLDRTK---EKKPSVIEAIRKALLTICK--------YYDPL--ASS-----------------GRNEDMLKDIL 152 (249)
T ss_dssp HHHHHHHHHGGG---CCCHHHHHHHHHHHHHHHH--------HSCTT--CTT-----------------CTTHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHH--------Hcccc--ccC-----------------CcHHHHHHHHH
Confidence 888777766664 3222223333333332221 11110 010 01334455667
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhcH---HHHHHHHhccCCCCchhH-HHHHHHHHHHhhhhccccchhhHHHHHHHhhc
Q 000149 662 DGLNHENLNVRYMVVCELSKLLKLKS---EDVTALINGEACSDLDVL-STLISSLLRGCAEESRTVVGQKLKLVCADCLG 737 (2037)
Q Consensus 662 ~rl~~en~~Vr~~aL~eL~~~L~~~~---~~l~~~~~~e~~~~~~vi-~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG 737 (2037)
..++|.|+.||.+++.-|..++.... +.+.. .+ ..++..|..+..+. +.+++..|.+|||
T Consensus 153 ~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~-----------~l~~~iip~l~~~l~D~-----~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 153 EHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR-----------YLKDEVVPIVIQIVNDT-----QPAIRTIGFESFA 216 (249)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHH-----------HHTTTHHHHHHHHHTCS-----SHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHH-----------HHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHH
Confidence 78889999999999999999987654 22322 23 34455555544332 3689999999999
Q ss_pred ccC
Q 000149 738 ALG 740 (2037)
Q Consensus 738 ~IG 740 (2037)
.|.
T Consensus 217 ~i~ 219 (249)
T 2qk1_A 217 ILI 219 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 954
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.41 Score=47.13 Aligned_cols=121 Identities=10% Similarity=-0.009 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
+.+..|...+....+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.++...+.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------- 70 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE----------- 70 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-----------
Confidence 356789999999999999999999999987765 3456778899999999999999999998763110
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~ 1499 (2037)
++ ......+.++..+|......|+ .+++.+.|.++++..|+ ...+..++.....
T Consensus 71 --------~~----------~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 --------NR----------EDYRQIAKAYARIGNSYFKEEK--YKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI 124 (131)
T ss_dssp --------ST----------TCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred --------cc----------hhHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 00 0122346778888888777665 88999999999999984 6667777665443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.26 Score=63.61 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
.....|...|.+..+.|+++.|...+.+|.+..+ +.+....|.++...|+.++|+..++++++..+
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------ 88 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP------------ 88 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------------
Confidence 4467899999999999999999999999987753 45778899999999999999999999876321
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2037)
..+.++..+|..+...|+ .+++++.|+++++++|+...+++.+|..+...-
T Consensus 89 ------------------------~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--- 139 (568)
T 2vsy_A 89 ------------------------EHPGIALWLGHALEDAGQ--AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC--- 139 (568)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---
T ss_pred ------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---
Confidence 014467777777777665 789999999999999999999999987764220
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1505 ~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
.-+ -...|+..|-+++..++..
T Consensus 140 --------~~g--------~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 140 --------DWR--------ALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp --------CCT--------THHHHHHHHHHHHHHTCCC
T ss_pred --------ccc--------cHHHHHHHHHHHHhcCCcc
Confidence 001 1236888888888887764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=94.71 E-value=0.23 Score=61.35 Aligned_cols=140 Identities=9% Similarity=0.042 Sum_probs=108.7
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCC-chHHHHHHHHHhhcCCccccccc
Q 000149 1343 GLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGST 1419 (2037)
Q Consensus 1343 ~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~g~~ 1419 (2037)
.++......|...+.+..+.|+++.|.....+|...++. .+....+.++...|+ ..+|+..+++++...|.
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------ 164 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------ 164 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT------
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC------
Confidence 345667889999999999999999999999999887654 567788999999997 99999999999863221
Q ss_pred ccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000149 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1420 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~ 1499 (2037)
.+.++..+|.-+...|+ .++++..|++|++++|+...+|+++|..+.+
T Consensus 165 ------------------------------~~~a~~~~g~~~~~~g~--~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~ 212 (382)
T 2h6f_A 165 ------------------------------NYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQE 212 (382)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ------------------------------CHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCccCHHHHHHHHHHHHH
Confidence 13456666666666665 5678889999999999999999999887654
Q ss_pred HHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1500 VLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1500 l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
+- . + ..|+.+|-+++...+.+
T Consensus 213 ~g--------------~-------~-~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 213 FK--------------L-------W-DNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HT--------------C-------C-TTHHHHHHHHHHHCTTC
T ss_pred cC--------------C-------h-HHHHHHHHHHHHhCCCC
Confidence 31 0 0 14888888888877665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=94.69 E-value=0.28 Score=59.25 Aligned_cols=117 Identities=14% Similarity=-0.004 Sum_probs=96.9
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-----------------hHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-----------------NVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p-----------------~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
...+..|...+....+.|.++.|.....+|....+. .+....|.++...|+..+|+..++.++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345778999999999999999999999998776532 567788999999999999999999987
Q ss_pred hcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000149 1409 LNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2037)
Q Consensus 1409 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK 1488 (2037)
...| ..++++..+|.-+...|+ .++++..|++|++++|....
T Consensus 224 ~~~p------------------------------------~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 224 ELDS------------------------------------NNEKGLSRRGEAHLAVND--FELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp HHCT------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHH
T ss_pred HhCC------------------------------------CcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHH
Confidence 6311 115577778887777665 88999999999999999999
Q ss_pred HHHHHHhhhHHH
Q 000149 1489 GYFYMAKYCDDV 1500 (2037)
Q Consensus 1489 ~~~~la~y~d~l 1500 (2037)
+|+.+|..+.++
T Consensus 266 a~~~l~~~~~~~ 277 (336)
T 1p5q_A 266 AKTQLAVCQQRI 277 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999877655
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=94.68 E-value=15 Score=47.62 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 241 LLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 241 ~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
|+.-++ +.+.+|+.++...-..+..+.+ .+.|...+++-.|..-|.++|+.+|+.|.+-+.++
T Consensus 51 ~~~vi~--l~~s~~~~~Krl~yl~l~~~~~---~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i 113 (591)
T 2vgl_B 51 FPDVVN--CMQTDNLELKKLVYLYLMNYAK---SQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCI 113 (591)
T ss_dssp HHHHHH--TTSSSCHHHHHHHHHHHHHHHH---HSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTC
T ss_pred HHHHHH--HhCCCCHHHHHHHHHHHHHHcc---cCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcC
Confidence 444444 4567889899988888888733 35677656666688889999999999997666555
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.35 Score=61.26 Aligned_cols=143 Identities=9% Similarity=0.075 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHHHcCCh-HHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHY-ETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~-~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
..+..|...+++....|.+ +.|...+.+|....+ +.+....|.+++..|+..+|+..++++++..|
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------- 168 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK----------- 168 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC-----------
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----------
Confidence 4467899999999999999 999999999877753 46788899999999999999999999876311
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQ-------KQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~-------~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
. +.++..+|.-+...+. ...+++++.|++|++++|....+|+.+|..
T Consensus 169 -------------------------~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 169 -------------------------N-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222 (474)
T ss_dssp -------------------------C-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -------------------------C-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0 2344444444433200 125788899999999999999999999988
Q ss_pred hHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCC
Q 000149 1497 CDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGH 1540 (2037)
Q Consensus 1497 ~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~ 1540 (2037)
|-..+.... ... .-...|+..|-+++...+
T Consensus 223 ~~~~~~~~~----------~~~----g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 223 YLSLYFNTG----------QNP----KISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHTT----------CCH----HHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHhhc----------ccc----chHHHHHHHHHHHHHhCC
Confidence 766642210 000 123479999999998876
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.1 Score=53.63 Aligned_cols=88 Identities=14% Similarity=0.235 Sum_probs=68.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
+...+-+.|+|++|..+|+++++..|++.....++=.|+..+|+++..+...+..+...|....-+. ....+-..+|+|
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~-~lg~~~~~~~~~ 97 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI-RKAACLVAMREW 97 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH-HHHHHHHHCCCH
Confidence 4566789999999999999999999999998888889999999999888877766655555444333 334567788999
Q ss_pred hhHHHHhhc
Q 000149 1200 DLMDEYLSG 1208 (2037)
Q Consensus 1200 d~lee~l~~ 1208 (2037)
+.-.+++..
T Consensus 98 ~~A~~~~~~ 106 (126)
T 4gco_A 98 SKAQRAYED 106 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=94.65 E-value=5.1 Score=45.62 Aligned_cols=100 Identities=9% Similarity=-0.000 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1349 GNCWLQYAKLCRL----AGHYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1349 ~~~WL~~AklARK----ag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
...|...+.+..+ .|.++.|...+.+|.+.+.+.+....+.++.. .|+..+|+..++.+++..+
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-------- 217 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-------- 217 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--------
Confidence 3467777888888 89999999999999888888899999999999 9999999999998865210
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccch
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT--GQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s--~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
+.++..+|..+... ...+.+++.+.|++|++..|..
T Consensus 218 ------------------------------~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 218 ------------------------------GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp ------------------------------HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred ------------------------------HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 23456666665541 1334678889999999998854
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.53 Score=47.48 Aligned_cols=111 Identities=10% Similarity=0.005 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
..+..|...+....+.|.++.|.....++....+ +.+....|.++...|+..+|+..++.++...|
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------------ 74 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG------------ 74 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------------
Confidence 4577899999999999999999999999877653 45778889999999999999999999876211
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc-----hHHHHHHHHh
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM-----WEKGYFYMAK 1495 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~-----weK~~~~la~ 1495 (2037)
..+.++..+|..+...|+ .++++..|++++++.|. ....+..+++
T Consensus 75 ------------------------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~ 124 (137)
T 3q49_B 75 ------------------------QSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124 (137)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHH
T ss_pred ------------------------hhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHChhHHHHHHHHHHHHHHH
Confidence 014467777877777665 78899999999999987 4444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=94.60 E-value=0.43 Score=49.56 Aligned_cols=112 Identities=12% Similarity=-0.017 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
+.+..|...|....+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------------ 78 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK------------ 78 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------------
Confidence 456789999999999999999999999987765 345677889999999999999999999876311
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
. .+.++..+|..+...|+ .+++.+.|.++++++|....++..++..
T Consensus 79 -------~-----------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 79 -------K-----------------YIKGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp -------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred -------c-----------------cHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0 13456677777666665 8889999999999999888887665543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=94.48 E-value=1.5 Score=51.53 Aligned_cols=111 Identities=12% Similarity=0.079 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHhh-cCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1348 VGNCWLQYAKLCRL-------AGHY-------ETATRAILEAQA-SGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1348 ~~~~WL~~AklARK-------ag~~-------~~A~~aLl~a~~-~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
....|+.++.+... .|.+ +.|...+.+|.. ..+ +.+.+.+|.++...|+.++|....+++++.
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 36789999998764 4776 889999999987 443 346778999999999999999999998762
Q ss_pred CCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHH
Q 000149 1411 KPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490 (2037)
Q Consensus 1411 ~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~ 1490 (2037)
. |.+ . ..++..+|.++...|. .+++.+.|.+|++..|.....|
T Consensus 129 ~-------------------p~~--------------~--~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 129 E-------------------DID--------------P--TLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp S-------------------SSC--------------T--HHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHHH
T ss_pred c-------------------ccC--------------c--cHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCCHHHH
Confidence 1 110 0 1167778888877665 7889999999999998776666
Q ss_pred HHHHh
Q 000149 1491 FYMAK 1495 (2037)
Q Consensus 1491 ~~la~ 1495 (2037)
..+|.
T Consensus 172 ~~~a~ 176 (308)
T 2ond_A 172 VTAAL 176 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.73 Score=50.31 Aligned_cols=132 Identities=8% Similarity=-0.090 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCC
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSL 1429 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~ 1429 (2037)
-.+...+....+.|.++.|...+.++.. ..+.+....|..++..|+..+|+..++.++...+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------- 68 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK----------------- 68 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------------
Confidence 3467889999999999999999998852 2456788899999999999999999999876311
Q ss_pred CCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH----------------HHHHHH
Q 000149 1430 VPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE----------------KGYFYM 1493 (2037)
Q Consensus 1430 ~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we----------------K~~~~l 1493 (2037)
..+.++..+|..+...|+ .+++++.|++++++.|... .+|+.+
T Consensus 69 -------------------~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (213)
T 1hh8_A 69 -------------------HLAVAYFQRGMLYYQTEK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127 (213)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence 014567777877776665 8899999999999776544 888988
Q ss_pred HhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1494 AKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1494 a~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
|..|.+.- -...|+..|-+++...++.
T Consensus 128 ~~~~~~~g----------------------~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 128 AFMYAKKE----------------------EWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHTT----------------------CHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHcc----------------------CHHHHHHHHHHHHHcCccc
Confidence 87764221 1135788888888877654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.91 Score=56.91 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
.+|....-.|...|.++.|..+.++.. ..|+-..+-..++-+.|...+|+..|+.++.
T Consensus 178 ~~Wk~v~~aCv~~~ef~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 178 RTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHcCcHHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 467787888888888888876665422 2344333455777788888899998888864
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.37 Score=48.86 Aligned_cols=100 Identities=11% Similarity=-0.059 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHH
Q 000149 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2037)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~ 1462 (2037)
..++.|..+...|+..+|+..+++++...| ..+.++..+|.-+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P------------------------------------~~~~a~~~lg~~~~ 62 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEP------------------------------------EREEAWRSLGLTQA 62 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------------------------TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCC------------------------------------CCHHHHHHHHHHHH
Confidence 356788999999999999999999876321 11557778888777
Q ss_pred HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1463 YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1463 ~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
..|+ .++++..|++|++++|....+|+.+|..|...- -...|+..|-+++...+++
T Consensus 63 ~~g~--~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g----------------------~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 63 ENEK--DGLAIIALNHARMLDPKDIAVHAALAVSHTNEH----------------------NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHC-----
T ss_pred HcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCcCC
Confidence 7775 889999999999999999999999998775432 0125777888887766543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.47 Score=46.59 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=20.0
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVRE 1069 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~ 1069 (2037)
.++......|.|..|+.+++..+..
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~ 30 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL 30 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc
Confidence 4677778889999999999887653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.57 Score=46.70 Aligned_cols=108 Identities=16% Similarity=0.050 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CC---hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--AP---NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p---~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
+.+...|....+.|.++.|...+.++.... .+ .+.+..|..+...|+..+|+..++..++..|
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p------------ 70 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP------------ 70 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC------------
Confidence 457888999999999999999999887653 33 5778889999999999999999999876321
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~ 1492 (2037)
. ....+.++..+|..+...|+ .+++++.|+++++.+|....+...
T Consensus 71 -------~--------------~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 71 -------T--------------HDKAAGGLLKLGLSQYGEGK--NTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp -------T--------------STTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred -------C--------------CcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCChHHHHH
Confidence 1 11235677888888777765 889999999999999976655443
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=94.25 E-value=3.8 Score=56.60 Aligned_cols=142 Identities=9% Similarity=0.081 Sum_probs=89.5
Q ss_pred cchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhh------cccHHHHHHHHHHHhHhhhhhhhhhhcccccc--c
Q 000149 162 EEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLL------NKRKAIRDAFCTQIGYFLQDTVLSSLFLDENA--S 233 (2037)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~------~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~--~ 233 (2037)
+.++.+....|..+..+-. +..+..-.+++ ...+. +++=..|+|+-..+.++.+.-. .+ ..+-. .
T Consensus 375 ~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i---~~~l~~~~~~~~~~w~~reaal~algaia~~~~-~~--~~~~~~~~ 447 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNE-VLVTNIFLAHM---KGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN-IT--NAGVSSTN 447 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCH-HHHHHHHHHHH---HHHHHHHHC----CHHHHHHHHHHHHHHHBSSC-CB--TTBCCCBC
T ss_pred cCcHHHHHHHHHHHHHHcc-hhHHHHHHHHH---HHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc-cc--cCCccccc
Confidence 3677888888888887765 33333322332 22223 4555688999888888641100 00 00000 0
Q ss_pred cchhhHHHHH-HHHHHhhhc--CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHh
Q 000149 234 SRSNELKLLD-VIKLAFTAA--DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCF 310 (2037)
Q Consensus 234 ~~~~~~~~~~-~~~~~~~~~--~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~ 310 (2037)
..-.-..||. .+...+... .+|.++-+.+.++|++ +...+.|.+.-++-.|+..|.++++.|+..|..-|.+++.
T Consensus 448 ~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~--~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 448 NLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTF--RNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp TTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHT--GGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHH--HhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 0013344443 344444444 3899999999999998 4456778887777789999999999999999999999987
Q ss_pred hh
Q 000149 311 FH 312 (2037)
Q Consensus 311 ~~ 312 (2037)
..
T Consensus 526 ~~ 527 (960)
T 1wa5_C 526 IR 527 (960)
T ss_dssp CB
T ss_pred cc
Confidence 53
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=94.19 E-value=0.52 Score=46.31 Aligned_cols=110 Identities=16% Similarity=0.244 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
..|...+......|.++.|...+.++.... .+......|.++...|+.++|+..+++++...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------------- 66 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--------------- 66 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC---------------
Confidence 468889999999999999999998887654 344566779999999999999999998865211
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
. ...++..+|......| +.+++.+.|.++++..|....+|+.+|..|
T Consensus 67 ----~-----------------~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 67 ----R-----------------SAEAWYNLGNAYYKQG--DYDEAIEYYQKALELDPRSAEAWYNLGNAY 113 (136)
T ss_dssp ----T-----------------CHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----C-----------------chHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 0 0234555566554444 478899999999999998888898888765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.09 E-value=1.3 Score=50.74 Aligned_cols=18 Identities=6% Similarity=-0.228 Sum_probs=9.7
Q ss_pred HHcCCcchHHHHHHHHHH
Q 000149 1236 MMKKDHFSVSDKIGVSKQ 1253 (2037)
Q Consensus 1236 l~~~d~~~f~~~I~~aR~ 1253 (2037)
...++..+..+.++.+..
T Consensus 164 ~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HTTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 445666655555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.45 Score=48.61 Aligned_cols=109 Identities=8% Similarity=-0.013 Sum_probs=87.0
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
.+.+..|-..+..+.+.|.++.|.....+|....+. .+..-.|..++..|+.++|+..++.+++-.|.
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~---------- 74 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE---------- 74 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc----------
Confidence 355677888999999999999999999999887644 45667899999999999999999998862110
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
+ .......|+++..+|......++ .+++++.|++|++.+|+
T Consensus 75 ---------~----------~~~~~~~a~~~~~lg~~~~~~~~--~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 75 ---------T----------RADYKLIAKAMSRAGNAFQKQND--LSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------T----------TCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCC
T ss_pred ---------c----------chhhHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcC
Confidence 0 01223568899999998887775 88899999999988875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.35 Score=61.21 Aligned_cols=153 Identities=11% Similarity=-0.034 Sum_probs=113.4
Q ss_pred HHHHHHHHhchhH-HHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCCh---
Q 000149 1044 VTLARASFRCQAY-ARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSL--- 1117 (2037)
Q Consensus 1044 ~lLa~aA~~c~ay-aRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~l--- 1117 (2037)
..++.....-+.| ..|+-+++..+..... ..+.+..|..+|...++++.+...... ...++.
T Consensus 106 ~~lg~~~~~~g~~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 173 (474)
T 4abn_A 106 MLKGKALNVTPDYSPEAEVLLSKAVKLEPE------------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL 173 (474)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHH
Confidence 3677888889999 9999999998765321 135678899999999999988877652 222331
Q ss_pred hHHHHHHHhh---------cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhc--------cChHHHHHHhhhhhccch-
Q 000149 1118 QDELLSNKKS---------GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNM--------CHLQAMVTHVDGLISRIP- 1179 (2037)
Q Consensus 1118 ~~qil~~E~~---------G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~L--------gq~~~ll~~~~gl~~~~p- 1179 (2037)
......+... |+|++|..+|+++++..|++......+-.|+..+ |+++..+...+......|
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 253 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK 253 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC
Confidence 1223445667 9999999999999999999988888888888888 999988877776655455
Q ss_pred --hhhhhHhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1180 --QYKKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1180 --~~~~~l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
.... .......+.+..|+|+.-.+++...
T Consensus 254 ~~~~~~-~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 254 ASSNPD-LHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp GGGCHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3322 2334456788999999887776554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.8 Score=53.68 Aligned_cols=157 Identities=6% Similarity=-0.169 Sum_probs=99.1
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH----hc-cC------
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL----HK-SL------ 1115 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~----r~-~~------ 1115 (2037)
+..-...|.|..|+-+++..+.-.....++. .....+..|..+|..+++++........ .. ..
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNED------EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3445568899999999988665322111110 0123567888999999999887665431 11 11
Q ss_pred -ChhHHHHHHHhh-cCHHHHHHHHHHHHccCCCc------hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhh----
Q 000149 1116 -SLQDELLSNKKS-GNWAEVFTSCEQALQMEPTS------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK---- 1183 (2037)
Q Consensus 1116 -~l~~qil~~E~~-G~W~~A~~~YE~~Lq~~p~~------~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~---- 1183 (2037)
........|+.. |++++|..+|+++++..|+. .....++-.++.++|+++..+.+.+......|+...
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 122334567785 99999999999999876643 223445667788999999888877765544333211
Q ss_pred --hHhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1184 --TWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1184 --~l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
........+...+|+++.-.+++...
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 01122334667789998888777664
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.39 Score=63.80 Aligned_cols=157 Identities=7% Similarity=-0.114 Sum_probs=112.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhh---cCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC---
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREK---SGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS--- 1116 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~---~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~--- 1116 (2037)
.....+..-+.|.+|+-+++..++.. ....+|. ..+.+-.+..+|..+++.+.+...... ...++
T Consensus 396 a~~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 468 (681)
T 2pzi_A 396 ASVLQATVLSQPVQTLDSLRAARHGALDADGVDFSE-------SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR 468 (681)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTC-------CCTT-------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred hHHhhcccccCHHHHHHHHHHhhhhccccccccccc-------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH
Confidence 33345588999999999999987210 0011121 224567888999999999988777542 11221
Q ss_pred -hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHh
Q 000149 1117 -LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2037)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWr 1195 (2037)
.......+...|++++|..+|+++++..|++...+..+=.|+.++|+|+. ....+..+...|+...-+. ....+...
T Consensus 469 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~-~lg~~~~~ 546 (681)
T 2pzi_A 469 LVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF-GLARARSA 546 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH-HHHHHHHH
Confidence 22345678899999999999999999999999888888889999999988 7777766665665444333 33457788
Q ss_pred cCChhhHHHHhhccc
Q 000149 1196 LGRWDLMDEYLSGAD 1210 (2037)
Q Consensus 1196 lg~Wd~lee~l~~~~ 1210 (2037)
+|+++.-.+++..+-
T Consensus 547 ~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 547 EGDRVGAVRTLDEVP 561 (681)
T ss_dssp TTCHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHhhc
Confidence 999998877776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=93.84 E-value=0.61 Score=45.75 Aligned_cols=107 Identities=11% Similarity=0.116 Sum_probs=59.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++......+.|..|+.+++..+..... ....+..+..+|...++++........ ...++ ..
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPA------------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 6788888999999999999997764211 123344555566655555554444321 11111 11
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCH 1163 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq 1163 (2037)
.....+...|+|++|..+|+++++..|++......+-.|+..+|+
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 122345555566666666665555555554444444445544444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.2 Score=50.26 Aligned_cols=88 Identities=11% Similarity=0.211 Sum_probs=66.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
.+...+.+.|+|++|..+|+++++..|++.....++-.|+..+|+|+..+...+......|....-+. ....+...+|+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~~~ 87 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI-RKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHHhC
Confidence 34556788999999999999999999999888888889999999999888877766665565433333 33456677888
Q ss_pred hhhHHHHhh
Q 000149 1199 WDLMDEYLS 1207 (2037)
Q Consensus 1199 Wd~lee~l~ 1207 (2037)
++.-.+++.
T Consensus 88 ~~~A~~~~~ 96 (126)
T 3upv_A 88 YASALETLD 96 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877665543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=93.83 E-value=0.84 Score=47.74 Aligned_cols=113 Identities=13% Similarity=0.030 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
....|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.++...+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------------- 107 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP------------- 107 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-------------
Confidence 35678889999999999999999988887664 345677788899999999999999988865311
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
. .+.++..+|..+...|+ .+++.+.|.++++..|....+|+.+|..|.
T Consensus 108 ------~-----------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 108 ------I-----------------NFNVRFRLGVALDNLGR--FDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp ------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ------H-----------------hHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 0 03355666666655554 788889999999999988888888887663
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.76 E-value=0.18 Score=67.08 Aligned_cols=137 Identities=13% Similarity=-0.032 Sum_probs=107.2
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
......|+..|.+..+.|+++.|...+.+|...+ .+.+....+.++...|+.++|+..++++++-.|
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----------- 498 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP----------- 498 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----------
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------
Confidence 3446789999999999999999999999987764 456788899999999999999999999986322
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVD 1503 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~ 1503 (2037)
.+ +.++..+|.-+...|+. ++ ++.|++|++++|....+|+.+|.-|.++-
T Consensus 499 --------~~-----------------~~~~~~lg~~~~~~g~~--~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g-- 548 (681)
T 2pzi_A 499 --------GE-----------------LAPKLALAATAELAGNT--DE-HKFYQTVWSTNDGVISAAFGLARARSAEG-- 548 (681)
T ss_dssp --------TC-----------------SHHHHHHHHHHHHHTCC--CT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTT--
T ss_pred --------CC-----------------hHHHHHHHHHHHHcCCh--HH-HHHHHHHHHhCCchHHHHHHHHHHHHHcC--
Confidence 11 23556667666667764 45 78999999999999999999998763221
Q ss_pred HHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcch
Q 000149 1504 ARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNL 1543 (2037)
Q Consensus 1504 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~ 1543 (2037)
-...|+..|-+++...+.+.
T Consensus 549 --------------------~~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 549 --------------------DRVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp --------------------CHHHHHHHHHTSCTTSTTHH
T ss_pred --------------------CHHHHHHHHHhhcccCcccH
Confidence 11368899999998887764
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=93.67 E-value=33 Score=47.64 Aligned_cols=105 Identities=10% Similarity=0.031 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhh--cCC--hhHHHHHHHHHHHHHhhhcccch
Q 000149 202 KRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA--ADD--PLILETLLESTAELMMAVDVHSQ 277 (2037)
Q Consensus 202 ~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d--~~i~eTll~~~~~i~~~~~~~~e 277 (2037)
.+=..|+|++-.++++.+... ....+.---.++..+-..... .+| +.++.|.+-++|+...=...+.+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~--------~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~ 536 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMS--------EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN 536 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSC--------HHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHcCCC--------chhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH
Confidence 578889999999999662111 000111111233333332322 122 45789999999998776667889
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhc
Q 000149 278 HFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2037)
Q Consensus 278 ~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~ 314 (2037)
.+.-++-.|++.|..+|+-|...|..-|.++|..+.+
T Consensus 537 ~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 9888899999999988999999999999999998765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=93.53 E-value=0.33 Score=47.91 Aligned_cols=89 Identities=6% Similarity=0.049 Sum_probs=66.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhh------hhHhHHHHHHHH
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK------KTWCMQGVQAAW 1194 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~------~~l~~~~~EAAW 1194 (2037)
...+...|+|++|..+|+++++..|++......+-.|+...|+++....+.+......|... .........+..
T Consensus 11 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999988888888999999999988777766554433321 122223456778
Q ss_pred hcCChhhHHHHhhcc
Q 000149 1195 RLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1195 rlg~Wd~lee~l~~~ 1209 (2037)
..|+|+.-.+++...
T Consensus 91 ~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 91 KEEKYKDAIHFYNKS 105 (131)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 899998877766543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=93.52 E-value=0.52 Score=57.85 Aligned_cols=116 Identities=10% Similarity=0.026 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhh----------------cC--CChHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQA----------------SG--APNVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~----------------~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2037)
+.+..|...|..+.+.|.++.|.....+|.. .. .+.+....|..+...|+.++|+..+++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4466799999999999999999998888765 21 23567788999999999999999999987
Q ss_pred hcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000149 1409 LNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2037)
Q Consensus 1409 ~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK 1488 (2037)
+..+ ..++++..+|..+...++ .+++++.|++|.+++|....
T Consensus 301 ~~~p------------------------------------~~~~a~~~lg~~~~~~g~--~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 301 EIDP------------------------------------SNTKALYRRAQGWQGLKE--YDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp TTCT------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHH
T ss_pred HhCc------------------------------------hhHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHH
Confidence 6211 115678888887777765 88999999999999999999
Q ss_pred HHHHHHhhhHHH
Q 000149 1489 GYFYMAKYCDDV 1500 (2037)
Q Consensus 1489 ~~~~la~y~d~l 1500 (2037)
++..++..+..+
T Consensus 343 ~~~~l~~~~~~~ 354 (370)
T 1ihg_A 343 IQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877655
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.33 Score=51.33 Aligned_cols=87 Identities=13% Similarity=0.121 Sum_probs=60.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...+...|+|++|..+|+++++..|++.....++-.|+..+|+|+..+...+..+...|....-+. ....+...+|+|+
T Consensus 18 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~~ 96 (164)
T 3sz7_A 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS-RLGLARFDMADYK 96 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHccCHH
Confidence 345667888888888888888888888777777778888888888777777665555554433222 3345667788887
Q ss_pred hHHHHhhc
Q 000149 1201 LMDEYLSG 1208 (2037)
Q Consensus 1201 ~lee~l~~ 1208 (2037)
.-.+++..
T Consensus 97 ~A~~~~~~ 104 (164)
T 3sz7_A 97 GAKEAYEK 104 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=93.42 E-value=0.84 Score=47.10 Aligned_cols=107 Identities=9% Similarity=-0.020 Sum_probs=83.9
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000149 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2037)
Q Consensus 1344 l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~ 1421 (2037)
+++.....|...|....+.|+++.|...+.++....+ +.+....+.++...|+..+|+..++.++...|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------- 83 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--------- 83 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 4456677899999999999999999999999877654 45677889999999999999999999876321
Q ss_pred ccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000149 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2037)
Q Consensus 1422 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK 1488 (2037)
.+ ..++..+|..+...|+ .+++++.|.++++++|....
T Consensus 84 ----------~~-----------------~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 84 ----------NE-----------------PRFPFHAAECHLQLGD--LDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp ----------TC-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCGG
T ss_pred ----------CC-----------------cHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCcc
Confidence 11 2346667777766665 78899999999999886543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.46 Score=59.96 Aligned_cols=117 Identities=12% Similarity=-0.007 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----------------ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----------------PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----------------p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
..+..|...+....+.|+++.|.....+|..+.+ ..+....|..+...|+..+|+..++.++.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4567899999999999999999999999876532 25677889999999999999999999886
Q ss_pred cCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH
Q 000149 1410 NKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG 1489 (2037)
Q Consensus 1410 ~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~ 1489 (2037)
..+ ..++++..+|.-+...++ .++++..|++|++++|....+
T Consensus 346 ~~p------------------------------------~~~~a~~~~g~a~~~~g~--~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 346 LDS------------------------------------ANEKGLYRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp HST------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTC----CH
T ss_pred cCC------------------------------------ccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHH
Confidence 311 115567777777766665 788999999999999999999
Q ss_pred HHHHHhhhHHHH
Q 000149 1490 YFYMAKYCDDVL 1501 (2037)
Q Consensus 1490 ~~~la~y~d~l~ 1501 (2037)
|..+|..+.++-
T Consensus 388 ~~~l~~~~~~~~ 399 (457)
T 1kt0_A 388 RLQISMCQKKAK 399 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998876553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=93.32 E-value=1.4 Score=49.25 Aligned_cols=170 Identities=12% Similarity=-0.022 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
...|...|...-+.|.++.|...+.++....+ +.+.+..|..+...|+..+|+..+++.++..|.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~---------- 73 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---------- 73 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC----------
Confidence 35688899999999999999999999876532 247888899999999999999999999874321
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhccchH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT----------------GQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s----------------~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
+ .....++..+|.-.... ...+.+++++.|+++++.+|+..
T Consensus 74 ---------~--------------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 74 ---------H--------------PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp ---------C--------------TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred ---------C--------------CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 1 01123444444433221 12347889999999999999877
Q ss_pred HHHHHH---HhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc--hhhhHHHHHHHhhhcCc
Q 000149 1488 KGYFYM---AKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN--LFQALPRLLTLWFDFGS 1559 (2037)
Q Consensus 1488 K~~~~l---a~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~--~~q~lpRlLtLWl~~g~ 1559 (2037)
.++... +.....+-............. .-...|+..|-+.+..-++. ....+.++-..+...|.
T Consensus 131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 131 YTTDATKRLVFLKDRLAKYEYSVAEYYTER--------GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence 665332 222111110000000000000 01236888888888765443 33567777777777664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.2 Score=53.43 Aligned_cols=85 Identities=9% Similarity=-0.149 Sum_probs=54.0
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~ 1201 (2037)
..+.+.|++++|..+|+++++..|++.....++=.|+..+|+|+..+...+......|+...-+..+ ..+-..+|+++.
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l-g~~~~~lg~~~e 122 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT-GQCQLRLKAPLK 122 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH-HHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH-HHHHHHcCCHHH
Confidence 3456677777777777777777777777766666777777777776666655544445433333322 345667777766
Q ss_pred HHHHhh
Q 000149 1202 MDEYLS 1207 (2037)
Q Consensus 1202 lee~l~ 1207 (2037)
-.+++.
T Consensus 123 A~~~~~ 128 (151)
T 3gyz_A 123 AKECFE 128 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.65 Score=52.96 Aligned_cols=162 Identities=12% Similarity=0.028 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHH--------cCCchHHHHHHHHHhhcCCcc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWS--------TRRSDGAIAELQQNLLNKPVE 1414 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~-----p~~~iE~AKLLW~--------~g~~~~Ai~~L~~~i~~~~~~ 1414 (2037)
....|+..|.+..+.|.++.|...+.++....+ +.+....+..++. .|+..+|+..+++.++..|..
T Consensus 51 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 51 AADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 356899999999999999999999999877632 3467778899999 999999999999998754321
Q ss_pred cccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc---hHHHHH
Q 000149 1415 VVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM---WEKGYF 1491 (2037)
Q Consensus 1415 ~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~---weK~~~ 1491 (2037)
+................+..++.+|..+...|+ .++++..|+++++.+|. -..+++
T Consensus 131 -------------------~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~a~~ 189 (261)
T 3qky_A 131 -------------------ELVDDATQKIRELRAKLARKQYEAARLYERREL--YEAAAVTYEAVFDAYPDTPWADDALV 189 (261)
T ss_dssp -------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred -------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHCCCCchHHHHHH
Confidence 000000000001112334556778888777765 88999999999999998 567999
Q ss_pred HHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1492 YMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1492 ~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
.+|.-|.++-.... . .+. ..-...|+..|-+.+..-+++
T Consensus 190 ~l~~~~~~~g~~~~---~--------~~~-~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 190 GAMRAYIAYAEQSV---R--------ARQ-PERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHTSC---G--------GGH-HHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcccch---h--------hcc-cchHHHHHHHHHHHHHHCCCC
Confidence 99987765521000 0 000 011236888888888765543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=93.19 E-value=0.55 Score=48.72 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=60.5
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
....+...|+|++|..+|+++++..|++.....++-.|+..+|+|+......+......|.....+. ....+....|++
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~a~~~~~~~~~ 97 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY-RRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH-HHHHHHHHhccH
Confidence 3455677888888888888888888888777777778888888888777766655544443322222 233456677888
Q ss_pred hhHHHHhhc
Q 000149 1200 DLMDEYLSG 1208 (2037)
Q Consensus 1200 d~lee~l~~ 1208 (2037)
+.-.+++..
T Consensus 98 ~~A~~~~~~ 106 (166)
T 1a17_A 98 RAALRDYET 106 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=93.19 E-value=14 Score=44.12 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1351 CWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~aLl~a~~~----~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
.|...+++....|+++.|...+.++... +.+ .+....|.+++..|+..+|...++.++.
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678899999999999999888776432 222 3566679999999999999999998875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.53 Score=55.22 Aligned_cols=146 Identities=15% Similarity=0.093 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
.+.++..|..+...|+++.|...+.++.... .+.+....|.++...|+.++|+..+++++...|....... ...
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~----~~~ 192 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL----VAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH----HHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH----HHH
Confidence 4556777777777777777777777765553 3456667777777777777777777766543221000000 000
Q ss_pred cCCCC-CCCCCcc-cccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch--HHHHHHHHhhhHHH
Q 000149 1427 LSLVP-LNPLPVL-SNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW--EKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1427 l~~~~-~~~~~~~-~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w--eK~~~~la~y~d~l 1500 (2037)
..+.. ....... .-.+....++.-+.+++.+|..+...|+ .+++...|.++++.+|.+ ..+|..+|..|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~--~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGR--NEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHccc--HHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 00000 0000000 0000001112225567778888777776 888888899999999988 77888888877544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=93.11 E-value=0.74 Score=49.02 Aligned_cols=107 Identities=8% Similarity=-0.112 Sum_probs=85.1
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1343 GLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1343 ~l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
.++++....|...+....+.|+++.|.....++....+ +.+....+..+...|+.++|+..+++++.-.|
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-------- 101 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-------- 101 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--------
Confidence 34566778899999999999999999999999887754 55677788999999999999999999876322
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
.+ +.++..+|.-+...|+ .+++++.|.+|+++.|.-+
T Consensus 102 -----------~~-----------------~~~~~~lg~~~~~lg~--~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 -----------ND-----------------YTPVFHTGQCQLRLKA--PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp -----------SC-----------------CHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCHH
T ss_pred -----------CC-----------------cHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCHH
Confidence 11 2356666776666665 7899999999999998653
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=93.01 E-value=1.1 Score=50.95 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=95.4
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hhh-hhhhccc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DTV-LSSLFLD 229 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~~-~~~~~~~ 229 (2037)
|++.|.. .+.+++..+...|++++.........-....-+..|-.+|.+++..+|..++..+..+.. ++- -..+.
T Consensus 17 ~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-- 93 (252)
T 4db8_A 17 MTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-- 93 (252)
T ss_dssp HHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH--
Confidence 5666655 456789999999999888733221100111233445556699999999999999998652 110 00000
Q ss_pred cccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc-chhHHH-HHHHHHHHhCCCCcchHHHHHHHHHH
Q 000149 230 ENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH-SQHFLF-LLILLVEQLDNPHVTVRMNASRLIRK 307 (2037)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~-~e~~~~-~l~~Li~~L~~~n~~~~~~a~~~i~~ 307 (2037)
+...+..+-+.+.. .|+.+++..+.+++.|....... ..+... ++-.|+..|.++++-++..|..-|.+
T Consensus 94 --------~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 94 --------DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (252)
T ss_dssp --------HTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred --------HcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 11245566665554 67889999999999984322212 111111 34458899999999999999999999
Q ss_pred HHhh
Q 000149 308 SCFF 311 (2037)
Q Consensus 308 la~~ 311 (2037)
++..
T Consensus 165 l~~~ 168 (252)
T 4db8_A 165 IASG 168 (252)
T ss_dssp HTTS
T ss_pred HHcC
Confidence 9754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=92.94 E-value=0.99 Score=50.53 Aligned_cols=157 Identities=10% Similarity=0.015 Sum_probs=107.9
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCCh-----
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSL----- 1117 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~l----- 1117 (2037)
-++...++-|.|.+|+-++|..+...+.+ ....+.+-.|..+|-..++.+.+...... ...|+-
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFG---------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTS---------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence 35777888999999999999987653221 11124566788999999999987776542 112221
Q ss_pred --hHHHHHHH------------------hhcCHHHHHHHHHHHHccCCCchhhh-----------------hhHHHHHHh
Q 000149 1118 --QDELLSNK------------------KSGNWAEVFTSCEQALQMEPTSVQRH-----------------SDVLNCLLN 1160 (2037)
Q Consensus 1118 --~~qil~~E------------------~~G~W~~A~~~YE~~Lq~~p~~~~~~-----------------~glL~CL~~ 1160 (2037)
-.....+. ..|++++|...|+++++..|++.... ..+-.++.+
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222232 26899999999999999999875432 233456788
Q ss_pred ccChHHHHHHhhhhhccchhhh--hhHhHHHHHHHHhcCChhhHHHHhhccc
Q 000149 1161 MCHLQAMVTHVDGLISRIPQYK--KTWCMQGVQAAWRLGRWDLMDEYLSGAD 1210 (2037)
Q Consensus 1161 Lgq~~~ll~~~~gl~~~~p~~~--~~l~~~~~EAAWrlg~Wd~lee~l~~~~ 1210 (2037)
.|+++..+...+.+....|+.. .+......++-..+|+++...+++....
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 8999988888887777666532 2333445678889999998887776543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=92.91 E-value=1.9 Score=50.70 Aligned_cols=132 Identities=10% Similarity=0.050 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--Ch-HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PN-VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~-~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
....|+.++.+..+.|.++.|.....+|....+ +. +.+.++.++...|+.++|+..++++++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p------------ 165 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR------------ 165 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT------------
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------------
Confidence 356899999999999999999999999887653 44 788999999999999999999999876311
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2037)
.. +.+++..+. +........+++.+.|.+|++.+|.....|..+|.++.+.
T Consensus 166 -------~~-----------------~~~~~~~a~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---- 216 (308)
T 2ond_A 166 -------TR-----------------HHVYVTAAL-MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL---- 216 (308)
T ss_dssp -------CC-----------------THHHHHHHH-HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----
T ss_pred -------CC-----------------HHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC----
Confidence 00 112222221 1112234688999999999999999999999888875321
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHHhcc
Q 000149 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHR 1538 (2037)
Q Consensus 1505 ~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~ 1538 (2037)
| -...|+..|-+++..
T Consensus 217 ----------g--------~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 217 ----------N--------EDNNTRVLFERVLTS 232 (308)
T ss_dssp ----------C--------CHHHHHHHHHHHHHS
T ss_pred ----------C--------CHHHHHHHHHHHHhc
Confidence 1 123577888888874
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.84 E-value=0.48 Score=47.98 Aligned_cols=100 Identities=9% Similarity=-0.072 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000149 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2037)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l 1427 (2037)
..|+..+....+.|.++.|...+.+|.... .+.+....+.++...|+..+|+..+++++.-.|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--------------- 82 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--------------- 82 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------
Confidence 458999999999999999999999987765 456777899999999999999999999886322
Q ss_pred CCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
. .+.++..+|..+...|+ .++++..|.++++++|.+.
T Consensus 83 ----~-----------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 83 ----K-----------------DIAVHAALAVSHTNEHN--ANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp ----T-----------------CHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC------
T ss_pred ----C-----------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcCCC
Confidence 1 02244445554444443 5678889999999988754
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=92.83 E-value=0.87 Score=51.37 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=98.6
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hhhhhhhcc
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DTVLSSLFL 228 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~~~~~~~~ 228 (2037)
+.+.++|-++ +.+|+..+..+|..+..+.......-.....+..+-.++.+++..+|.+++..+..+.. ++-...
T Consensus 47 ~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--- 122 (252)
T 4hxt_A 47 EVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK--- 122 (252)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH---
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH---
Confidence 3466666654 58899999999999988754321111112344555666799999999999999999751 111000
Q ss_pred ccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHHHHHHH
Q 000149 229 DENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIR 306 (2037)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~ 306 (2037)
.-.+...+..+-+.+. ..|+.+++..+.+++.+....+...+.+. -++-.|++.|.++++.++..|..-|.
T Consensus 123 ------~~~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~ 195 (252)
T 4hxt_A 123 ------AIVDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALA 195 (252)
T ss_dssp ------HHHHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred ------HHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 0011234556666444 56688999999999998542211111111 14455888999999999999999999
Q ss_pred HHHhh
Q 000149 307 KSCFF 311 (2037)
Q Consensus 307 ~la~~ 311 (2037)
++|..
T Consensus 196 ~l~~~ 200 (252)
T 4hxt_A 196 NIASG 200 (252)
T ss_dssp HHTTS
T ss_pred HHHcC
Confidence 99763
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.82 E-value=0.37 Score=46.53 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=64.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
....+...|+|++|..+|+.+++..|++......+-.|+..+|+++......+......|.... .......+....|++
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK-GYSRKAAALEFLNRF 88 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHHHhhH
Confidence 3445678899999999999999988988887778888888999998877776665554454322 222344567788888
Q ss_pred hhHHHHhhcc
Q 000149 1200 DLMDEYLSGA 1209 (2037)
Q Consensus 1200 d~lee~l~~~ 1209 (2037)
+...+++...
T Consensus 89 ~~A~~~~~~~ 98 (118)
T 1elw_A 89 EEAKRTYEEG 98 (118)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877666543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=92.78 E-value=1.9 Score=49.15 Aligned_cols=137 Identities=8% Similarity=0.041 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
....|...+.+..+.|.++.|...+.+|...+++.+....+.++.. .|+..+|+..++++++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 3567899999999999999999999999888888899999999999 999999999999886520
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT--GQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL 1501 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s--~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~ 1501 (2037)
.+.++..+|...... ...+.+++++.|++|++.. ...+++.+|..|..-.
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGK 124 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCS
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCC
Confidence 034566677666541 1345889999999999885 5678899988763210
Q ss_pred HHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1502 VDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1502 ~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
...+ -...|+..|-+++..++..
T Consensus 125 ----------~~~~--------~~~~A~~~~~~a~~~~~~~ 147 (273)
T 1ouv_A 125 ----------VVTR--------DFKKAVEYFTKACDLNDGD 147 (273)
T ss_dssp ----------SSCC--------CHHHHHHHHHHHHHTTCHH
T ss_pred ----------Cccc--------CHHHHHHHHHHHHhcCcHH
Confidence 0001 1236888899999887543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=1.2 Score=46.79 Aligned_cols=105 Identities=10% Similarity=-0.018 Sum_probs=82.3
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000149 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2037)
Q Consensus 1344 l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~ 1421 (2037)
+++.....|...+....+.|+++.|...+.++....+ +.+....+..+...|+.++|+..++.++.-.|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------- 86 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--------- 86 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 3455677899999999999999999999999877653 45677889999999999999999999876321
Q ss_pred ccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000149 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1422 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
.+ +.++..+|..+...|+ .+++.+.|.+++++.|.-
T Consensus 87 ----------~~-----------------~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 87 ----------XE-----------------PRFPFHAAECLLQXGE--LAEAESGLFLAQELIANX 122 (148)
T ss_dssp ----------TC-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTC
T ss_pred ----------CC-----------------chHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcCC
Confidence 11 2356667777766665 788899999999998753
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=92.77 E-value=18 Score=47.36 Aligned_cols=91 Identities=5% Similarity=-0.014 Sum_probs=59.9
Q ss_pred ccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHh--hcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhh
Q 000149 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLL--LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE 238 (2037)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~--~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (2037)
.+-++...++.|..|- .++ + .......|..++ .|++..||.+|+-.+..+.+. .. +--..
T Consensus 124 n~~ir~lALr~L~~i~---~~e-~---~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~------~p-----~~~~~ 185 (621)
T 2vgl_A 124 NPTFMGLALHCIANVG---SRE-M---AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT------SP-----DLVPM 185 (621)
T ss_dssp CHHHHHHHHHHHHHHC---CHH-H---HHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH------CG-----GGCCC
T ss_pred CHHHHHHHHHHhhccC---CHH-H---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh------Ch-----hhcCc
Confidence 3444555666666662 222 1 122334566677 899999999999999997621 00 01111
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 000149 239 LKLLDVIKLAFTAADDPLILETLLESTAELMM 270 (2037)
Q Consensus 239 ~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~ 270 (2037)
..+++++.+.+. -+||.|+...+-.+.+|+.
T Consensus 186 ~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 186 GDWTSRVVHLLN-DQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp CSCHHHHHHHTT-CSCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhC-CCCccHHHHHHHHHHHHHH
Confidence 357888988774 5789999999999999855
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.58 Score=46.39 Aligned_cols=90 Identities=16% Similarity=0.265 Sum_probs=52.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~ 1124 (2037)
.++....+.+.|..|+.+++..+... |. ....+..+..+|.
T Consensus 21 ~~~~~~~~~~~~~~A~~~~~~al~~~-----~~-------~~~~~~~la~~~~--------------------------- 61 (133)
T 2lni_A 21 NKGNECFQKGDYPQAMKHYTEAIKRN-----PK-------DAKLYSNRAACYT--------------------------- 61 (133)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHTTC-----TT-------CHHHHHHHHHHHT---------------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-----CC-------cHHHHHHHHHHHH---------------------------
Confidence 57888899999999999999976532 10 1123334444444
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000149 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2037)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl 1174 (2037)
..|+|++|..+|+++++..|++......+-.|+..+|+++....+.+..
T Consensus 62 -~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 62 -KLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp -TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455555555555555555555544444555555555555544444433
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.57 E-value=1.3 Score=46.66 Aligned_cols=116 Identities=9% Similarity=-0.071 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------------------C--CChHHHHHHHHHHHcCCchHHHHHHHH
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS------------------G--APNVHMEKAKLLWSTRRSDGAIAELQQ 1406 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~------------------~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~ 1406 (2037)
..+..|...+....+.|.++.|.....+|... . .+.+....|..+...|+..+|+..++.
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45678999999999999999999988887655 1 123566778889999999999999998
Q ss_pred HhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000149 1407 NLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1407 ~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
++.-.| ..++++..+|.-+...|+ .++++..|.+|++++|..
T Consensus 89 al~~~p------------------------------------~~~~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 89 VLKREE------------------------------------TNEKALFRRAKARIAAWK--LDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHST------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGG
T ss_pred HHhcCC------------------------------------cchHHHHHHHHHHHHHhc--HHHHHHHHHHHHhcCCCC
Confidence 876211 115677788887777765 788999999999999987
Q ss_pred H-HHHHHHHhhhHHH
Q 000149 1487 E-KGYFYMAKYCDDV 1500 (2037)
Q Consensus 1487 e-K~~~~la~y~d~l 1500 (2037)
. ..+..++....++
T Consensus 131 ~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 131 ASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 6 4455665554433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.56 E-value=0.32 Score=49.67 Aligned_cols=59 Identities=7% Similarity=0.134 Sum_probs=49.9
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
...+.+.|+|++|..+|+++++..|++.....++=.|+..+|+|+..+...+..+...|
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 45677899999999999999999999999888888999999999988877765544333
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=92.55 E-value=2.3 Score=47.77 Aligned_cols=82 Identities=9% Similarity=0.022 Sum_probs=45.0
Q ss_pred hhcCHHHHHHHHHHHHcc--------CCCchhhhhhHHHHHHhccChHHHHHHhhhhhcc--------chhhhhhHhHHH
Q 000149 1126 KSGNWAEVFTSCEQALQM--------EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISR--------IPQYKKTWCMQG 1189 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~--------~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~--------~p~~~~~l~~~~ 1189 (2037)
..|+|++|..+|+++++. .|........+-.|+...|+++....+.+..... .|.. .......
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV-AATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHH-HHHHHHH
Confidence 456666777777666652 2333444455666777777777666555443221 1211 1122223
Q ss_pred HHHHHhcCChhhHHHHhhc
Q 000149 1190 VQAAWRLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1190 ~EAAWrlg~Wd~lee~l~~ 1208 (2037)
..+.+..|+|+...+++..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHH
Confidence 4566777888777666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.93 Score=53.13 Aligned_cols=146 Identities=10% Similarity=-0.009 Sum_probs=107.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCChh----
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLSLQ---- 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~l~---- 1118 (2037)
.+|....+-|.|..|+-+++..+....+ ..+.+-.|..+|...+++|........- ..++..
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~ 189 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQ------------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGL 189 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTS------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCc------------chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHH
Confidence 5788889999999999999998775322 1346778999999999999998887532 122211
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhh-HhHHHHHHHHhcC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT-WCMQGVQAAWRLG 1197 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~-l~~~~~EAAWrlg 1197 (2037)
...+.+...|+.++|...|+++++..|++.+.+..+-.++...|+++......+..+...|++... .......+--.+|
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 122345677889999999999999999999999999999999999999988888877776765221 1112233333456
Q ss_pred ChhhH
Q 000149 1198 RWDLM 1202 (2037)
Q Consensus 1198 ~Wd~l 1202 (2037)
+++..
T Consensus 270 ~~~~a 274 (287)
T 3qou_A 270 TGDAL 274 (287)
T ss_dssp TTCHH
T ss_pred CCCcH
Confidence 65543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=92.43 E-value=0.38 Score=49.81 Aligned_cols=86 Identities=7% Similarity=0.045 Sum_probs=60.9
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...+...|+|++|..+|+++++..|++.....++=.|+..+|+++..+...+......|+...-+ .....+...+|+++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP-FHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH-HHHHHHHHHTTCHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHcCCHH
Confidence 34566788888888888888888888888777777888888888877777666555445432222 23345667788887
Q ss_pred hHHHHhh
Q 000149 1201 LMDEYLS 1207 (2037)
Q Consensus 1201 ~lee~l~ 1207 (2037)
.-.+++.
T Consensus 104 ~A~~~~~ 110 (142)
T 2xcb_A 104 GAESGFY 110 (142)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=92.38 E-value=0.35 Score=52.39 Aligned_cols=86 Identities=16% Similarity=0.238 Sum_probs=66.2
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCC-------chh-----hhhhHHHHHHhccChHHHHHHhhhhhcc-------ch
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPT-------SVQ-----RHSDVLNCLLNMCHLQAMVTHVDGLISR-------IP 1179 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~-------~~~-----~~~glL~CL~~Lgq~~~ll~~~~gl~~~-------~p 1179 (2037)
.....+.+.|+|++|..+|+++|+..|+ +.. .+.+.=.|+.++|+|+..+...+..+.. .|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3456677899999999999999999998 433 5566778999999999988888877766 78
Q ss_pred hhhhhH----hHHHHHHHHhcCChhhHHHH
Q 000149 1180 QYKKTW----CMQGVQAAWRLGRWDLMDEY 1205 (2037)
Q Consensus 1180 ~~~~~l----~~~~~EAAWrlg~Wd~lee~ 1205 (2037)
++..-| +..+. |--.+|+++.-.+.
T Consensus 96 d~~~A~~~~~~~rG~-aL~~lgr~eEAl~~ 124 (159)
T 2hr2_A 96 DEGKLWISAVYSRAL-ALDGLGRGAEAMPE 124 (159)
T ss_dssp THHHHHHHHHHHHHH-HHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHhHHH-HHHHCCCHHHHHHH
Confidence 777666 54443 66678888776544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.45 Score=47.42 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=64.7
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCch---hhhhhHHHHHHhccChHHHHHHhhhhhccchhhh--hhHhHHHHHHH
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK--KTWCMQGVQAA 1193 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~--~~l~~~~~EAA 1193 (2037)
.....+...|+|++|...|+.+++..|++. .....+-.|+...|+++......+......|+.. .+.......+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 345567788999999999999999888876 5666777888999999988877776665555431 12222345667
Q ss_pred HhcCChhhHHHHhhc
Q 000149 1194 WRLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1194 Wrlg~Wd~lee~l~~ 1208 (2037)
...|+++.-.+++..
T Consensus 87 ~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 788888877666544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=92.31 E-value=2 Score=46.80 Aligned_cols=134 Identities=6% Similarity=-0.031 Sum_probs=93.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++....+-|.|..|+.+++..+. + ....+-.+..+|..+++.+........ ...+. ..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~-------~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 75 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQD-------P--------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF 75 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSS-------C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcC-------C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 467788889999999999987531 1 124677889999999999887776542 11121 22
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCch----------------hhhhhHHHHHHhccChHHHHHHhhhhhccchhhh
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSV----------------QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK 1182 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~----------------~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~ 1182 (2037)
.....|...|++++|..+|+++++..|++. .....+-.|+..+|+++......+......|+..
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 345667889999999999999999777655 5556677788899999988877776666555443
Q ss_pred hhHhHHHHHHH
Q 000149 1183 KTWCMQGVQAA 1193 (2037)
Q Consensus 1183 ~~l~~~~~EAA 1193 (2037)
......+++..
T Consensus 156 ~~~~~~a~~~~ 166 (213)
T 1hh8_A 156 HSKIDKAMECV 166 (213)
T ss_dssp GGHHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 33333334433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.45 Score=47.98 Aligned_cols=86 Identities=13% Similarity=0.028 Sum_probs=61.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...+...|+|++|..+|+++++..|++......+-.|+..+|+|+......+......|....-+. ....+...+|+|+
T Consensus 16 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~~~~~ 94 (137)
T 3q49_B 16 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF-FLGQCQLEMESYD 94 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH-HHHHHHHHHhhHH
Confidence 345668888999999999888888888887788888888889988877776665555554333222 3345667788887
Q ss_pred hHHHHhh
Q 000149 1201 LMDEYLS 1207 (2037)
Q Consensus 1201 ~lee~l~ 1207 (2037)
.-.+++.
T Consensus 95 ~A~~~~~ 101 (137)
T 3q49_B 95 EAIANLQ 101 (137)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=92.13 E-value=11 Score=48.05 Aligned_cols=152 Identities=14% Similarity=0.088 Sum_probs=94.1
Q ss_pred HHHHHHhhcccCccchhHHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-hhhhh
Q 000149 149 LNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-TVLSS 225 (2037)
Q Consensus 149 ~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~~~~~ 225 (2037)
-+.+-++|-.....++|..+..+|..|..|.+.. ..++. --+..|-.+|.+++..||+.++.++..+..+ +-...
T Consensus 102 ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~--GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~ 179 (510)
T 3ul1_B 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179 (510)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4557777776667789988888999988776644 22222 1233445566999999999999999886421 11000
Q ss_pred -hccccccccchhhHHHHHHHHHHhhhcC----ChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcchH
Q 000149 226 -LFLDENASSRSNELKLLDVIKLAFTAAD----DPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVR 298 (2037)
Q Consensus 226 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~~ 298 (2037)
+.. ...+..+-..+...+ ...++.++..+++.+++......+.. .-++-.|+..|.++++-++
T Consensus 180 ~v~~----------~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~ 249 (510)
T 3ul1_B 180 LVIK----------HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 249 (510)
T ss_dssp HHHH----------TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHH----------cCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHH
Confidence 011 112233334333222 23356677777777754333333322 2344558888899999999
Q ss_pred HHHHHHHHHHHhhh
Q 000149 299 MNASRLIRKSCFFH 312 (2037)
Q Consensus 299 ~~a~~~i~~la~~~ 312 (2037)
..|..-|..++...
T Consensus 250 ~~A~~aL~~L~~~~ 263 (510)
T 3ul1_B 250 ADSCWAISYLTDGP 263 (510)
T ss_dssp HHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhhch
Confidence 99999999987654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.76 Score=49.29 Aligned_cols=46 Identities=7% Similarity=-0.065 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch--HHHHHHHHhhhH
Q 000149 1451 AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW--EKGYFYMAKYCD 1498 (2037)
Q Consensus 1451 Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w--eK~~~~la~y~d 1498 (2037)
+.++..+|..+...|+ .++++..|.++++.+|.+ ..+|+.+|..+.
T Consensus 108 ~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 108 FELACELAVQYNQVGR--DEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 4466777777766665 777888888888888876 347777776553
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=91.94 E-value=10 Score=48.38 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=92.9
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-hhhh
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-TVLS 224 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~~~~ 224 (2037)
.-+.+.++|-.....++|..+..+|..|..|.+.. ..+.. --+..|-.+|.+++..||+.++.++..+..+ +-..
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~--Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 34557777776777888988888999998887644 22221 1233445577999999999999999886411 1100
Q ss_pred h-hccccccccchhhHHHHHHHHHHhhhcC----ChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcch
Q 000149 225 S-LFLDENASSRSNELKLLDVIKLAFTAAD----DPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTV 297 (2037)
Q Consensus 225 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~ 297 (2037)
. +... ..+..+-..+.... ...++..+..+++.+++......+.. .-++=.|+..|.++++-+
T Consensus 198 ~~i~~~----------g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 267 (529)
T 3tpo_A 198 DLVIKH----------GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 267 (529)
T ss_dssp HHHHHT----------TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHc----------CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence 0 1111 12223333333222 22356666667777654332222222 223445888889999999
Q ss_pred HHHHHHHHHHHHhhh
Q 000149 298 RMNASRLIRKSCFFH 312 (2037)
Q Consensus 298 ~~~a~~~i~~la~~~ 312 (2037)
+..|..-|..++...
T Consensus 268 ~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 268 LADSCWAISYLTDGP 282 (529)
T ss_dssp HHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhhh
Confidence 999998888887654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=1.6 Score=56.27 Aligned_cols=166 Identities=9% Similarity=0.057 Sum_probs=97.2
Q ss_pred cCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCccc
Q 000149 1362 AGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLS 1439 (2037)
Q Consensus 1362 ag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~ 1439 (2037)
+|.++.|...+.++.+.. .+.+....|..++..|+.++|+..++++++..+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------------------------- 54 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--------------------------- 54 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST---------------------------
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------------
Confidence 366778888777776554 356788899999999999999999999876311
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchh
Q 000149 1440 NTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEK 1519 (2037)
Q Consensus 1440 ~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~ 1519 (2037)
..+.++..+|..+...|+ .+++.+.|++|++++|+...+|+.+|..|.+.-
T Consensus 55 ---------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------------------ 105 (568)
T 2vsy_A 55 ---------GHPEAVARLGRVRWTQQR--HAEAAVLLQQASDAAPEHPGIALWLGHALEDAG------------------ 105 (568)
T ss_dssp ---------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT------------------
T ss_pred ---------CCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC------------------
Confidence 014567777877777665 889999999999999999999999997663220
Q ss_pred hhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHh
Q 000149 1520 RWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLT 1597 (2037)
Q Consensus 1520 ~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt 1597 (2037)
-...|+..|-+++...+++. .....+-.+....+.. ....++...+.+.++..-..+.++..+.
T Consensus 106 ----~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 106 ----QAEAAAAAYTRAHQLLPEEP-YITAQLLNWRRRLCDW---------RALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp ----CHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCC---------TTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ----CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHhhcc---------ccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 11368888888888776643 2333344444443110 1122333344455555445555554443
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=91.91 E-value=2.9 Score=47.02 Aligned_cols=148 Identities=12% Similarity=0.119 Sum_probs=96.7
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-hh-hhhhccc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-TV-LSSLFLD 229 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~~-~~~~~~~ 229 (2037)
+.++|-.+. .+++..+...|..+..+.......-....-+..|-.+|.+++..+|..++..+..+..+ +- -..+.
T Consensus 7 L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 83 (252)
T 4hxt_A 7 LVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-- 83 (252)
T ss_dssp HHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH--
Confidence 556665544 88999999999999988652211001122344555666999999999999999987521 11 00011
Q ss_pred cccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHHHHHHHH
Q 000149 230 ENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRK 307 (2037)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~~ 307 (2037)
+...+..+-+.+. ..|+.+++..+.+++.+....+...+.+. -++-.|+..|.++++-++..|..-|.+
T Consensus 84 --------~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 84 --------DAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp --------HTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred --------HCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1134555666444 46788999999999998532211112111 135568899999999999999999999
Q ss_pred HHhh
Q 000149 308 SCFF 311 (2037)
Q Consensus 308 la~~ 311 (2037)
++..
T Consensus 155 l~~~ 158 (252)
T 4hxt_A 155 IASG 158 (252)
T ss_dssp HTTS
T ss_pred HHcC
Confidence 9654
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.83 E-value=2.3 Score=49.16 Aligned_cols=161 Identities=10% Similarity=0.024 Sum_probs=105.8
Q ss_pred CChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCC-chhhhhhhhHHH-HHHHHHhhcccHHHHHHHHHHHhHhhhh
Q 000149 143 SDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGT-RDVLLKTRSEWI-KCIEFLLLNKRKAIRDAFCTQIGYFLQD 220 (2037)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~-~~~~~~~~~~w~-~~~~~~~~~~~r~vR~a~~~~~~~~~~~ 220 (2037)
-+|.++-..+-+.|-..+.-.|+.+...+|..+..+.. ...--.-....+ ..++.+ .|+...||.++..++..|+++
T Consensus 56 ~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~ 134 (249)
T 2qk1_A 56 QNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKY 134 (249)
T ss_dssp CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 35666655566665455666677777888888877655 332101011112 344555 899999999999999998732
Q ss_pred hhhhhhcccccc-ccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-----HHHHHHHHHHhCCCC
Q 000149 221 TVLSSLFLDENA-SSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-----LFLLILLVEQLDNPH 294 (2037)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-----~~~l~~Li~~L~~~n 294 (2037)
- +. .....-..++..+..++... +|++++..+..++++..+.....+-| .-.+=.|...|+.++
T Consensus 135 ~---------~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~ 204 (249)
T 2qk1_A 135 Y---------DPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ 204 (249)
T ss_dssp S---------CTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS
T ss_pred c---------cccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC
Confidence 1 11 11112456888898877655 89999999999999866542211322 122334888889999
Q ss_pred cchHHHHHHHHHHHHhhhhc
Q 000149 295 VTVRMNASRLIRKSCFFHLK 314 (2037)
Q Consensus 295 ~~~~~~a~~~i~~la~~~~~ 314 (2037)
+.||..|+.-+-.+++.--.
T Consensus 205 ~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 205 PAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHhCH
Confidence 99999999999999766533
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.95 Score=51.44 Aligned_cols=150 Identities=12% Similarity=0.086 Sum_probs=98.6
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2037)
+.+.++|-++. .+|+..+...|..+..+.... ..++ ..-+..|-.+|.+++..||..++.++..+..++-..
T Consensus 57 ~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--- 130 (252)
T 4db8_A 57 PALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--- 130 (252)
T ss_dssp HHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH---
T ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH---
Confidence 44667776654 889999999999998865433 1111 123345556679999999999999999975221100
Q ss_pred cccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcchHHHHHHHH
Q 000149 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRLI 305 (2037)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~~~~a~~~i 305 (2037)
-..-.....+..+-+.+. ..|+.+++..+.+++.+....+...+.+ .-++-.|++.|.++++.++..|..-|
T Consensus 131 -----~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 204 (252)
T 4db8_A 131 -----IQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 204 (252)
T ss_dssp -----HHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred -----HHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 000111235566666554 4588899999999999854221121111 11344688999999999999999999
Q ss_pred HHHHhh
Q 000149 306 RKSCFF 311 (2037)
Q Consensus 306 ~~la~~ 311 (2037)
.++|..
T Consensus 205 ~~l~~~ 210 (252)
T 4db8_A 205 SNIASG 210 (252)
T ss_dssp HHHTTS
T ss_pred HHHhcC
Confidence 999753
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=91.69 E-value=34 Score=42.86 Aligned_cols=149 Identities=7% Similarity=0.053 Sum_probs=90.7
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhh-cccHHHHHHHHHHHhHhhhhh-hhhhh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLL-NKRKAIRDAFCTQIGYFLQDT-VLSSL 226 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~-~~~r~vR~a~~~~~~~~~~~~-~~~~~ 226 (2037)
+.+.++|. ..+.+|+..++..|.++..+...- ..... ...+.-+-.+|. +++..+|..+++.+..+-.++ ....+
T Consensus 20 ~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 20 PELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHHHHHHHTC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHcCCccHHHHHhC-cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 34556665 456788888999999998775421 11111 122332233334 458999999999999854111 11111
Q ss_pred ccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcchHHHHHHH
Q 000149 227 FLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRL 304 (2037)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~~~~a~~~ 304 (2037)
+. ...+..+-+.+ ...|+.+++..+.+++.+....+...+.+ .-++-.|++.|.++++-++..|..-
T Consensus 98 ~~----------~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 98 FK----------SGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166 (529)
T ss_dssp HH----------TTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred HH----------cCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 11 12334444433 34678899999999999854322222222 2345568999999999999988888
Q ss_pred HHHHHhh
Q 000149 305 IRKSCFF 311 (2037)
Q Consensus 305 i~~la~~ 311 (2037)
+.++|..
T Consensus 167 L~~la~~ 173 (529)
T 1jdh_A 167 LQILAYG 173 (529)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 8888653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.66 E-value=0.81 Score=52.56 Aligned_cols=128 Identities=13% Similarity=0.177 Sum_probs=87.8
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-hcc--------
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKS-------- 1114 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-r~~-------- 1114 (2037)
..++......|.|..|+.+++..+........+ ........+..|..+|...++++...-.... ...
T Consensus 73 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 73 NILALVYRDQNKYKDAANLLNDALAIREKTLGK----DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 357888889999999999999876542110000 0001124567899999999999987776531 100
Q ss_pred -C----ChhHHHHHHHhhcCHHHHHHHHHHHHcc--------CCCchhhhhhHHHHHHhccChHHHHHHhhhhh
Q 000149 1115 -L----SLQDELLSNKKSGNWAEVFTSCEQALQM--------EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLI 1175 (2037)
Q Consensus 1115 -~----~l~~qil~~E~~G~W~~A~~~YE~~Lq~--------~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~ 1175 (2037)
+ ........+...|+|++|..+|+++++. .|........+-.|+..+|+++....+.+...
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 1223345678999999999999999876 44445556677889999999998777666544
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=91.65 E-value=0.53 Score=61.88 Aligned_cols=246 Identities=13% Similarity=0.066 Sum_probs=150.9
Q ss_pred hcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccc
Q 000149 12 ALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLL 91 (2037)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (2037)
.|+|.++.||..|+-+|.-|. ++.+...+...+....++.+.-|||.-+.++|-+.-.+... +.+....-+++..
T Consensus 115 DL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~--v~~~~~~l~~lL~ 189 (618)
T 1w63_A 115 DLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL--MEMFLPATKNLLN 189 (618)
T ss_dssp HHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG--GGGGGGGTTTSTT
T ss_pred hcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH--HHHHHHHHHHHhC
Confidence 567999999999999988776 67888888888888888999999999999998887654311 1111111122222
Q ss_pred ccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcc-------------
Q 000149 92 NVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYD------------- 158 (2037)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------- 158 (2037)
| .| +.-+..++.-+ |.+|... .+....|..+-+.++++|.+
T Consensus 190 D-~d---~~V~~~Al~~L-~~i~~~~---------------------~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~ 243 (618)
T 1w63_A 190 E-KN---HGVLHTSVVLL-TEMCERS---------------------PDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVS 243 (618)
T ss_dssp C-CC---HHHHHHHHHHH-HHHCCSH---------------------HHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred C-CC---HhHHHHHHHHH-HHHHHhC---------------------hHHHHHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 2 11 11111111000 1112111 00011233344445555543
Q ss_pred -cCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHh------hcccHHHHHHHHHHHhHhhhhhhhhhhccccc
Q 000149 159 -ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLL------LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2037)
Q Consensus 159 -~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~------~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2037)
-+++-.|+.+++.|+.+..+.... ......+|..++ .|.+.+|...+++++-.+-
T Consensus 244 ~~~~~~~q~~il~~L~~l~~~~~~~-----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~------------- 305 (618)
T 1w63_A 244 GISDPFLQVRILRLLRILGRNDDDS-----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK------------- 305 (618)
T ss_dssp SSSCHHHHHHHHHHHHHHTTTCHHH-----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC-------------
T ss_pred CCCCChHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC-------------
Confidence 246777888899988887763311 122334555553 3567789988888776521
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhh
Q 000149 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2037)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~ 311 (2037)
+...-...+...+.. |...+|+.++...|.+++.|+.. +.+.+.-..-.++..|..++..||-.|...+..++..
T Consensus 306 -~~~~l~~~a~~~L~~-~L~~~d~~vr~~aL~~L~~i~~~---~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 306 -SESGLRVLAINILGR-FLLNNDKNIRYVALTSLLKTVQT---DHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp -CCHHHHHHHHHHHHH-HHTCSSTTTHHHHHHHHHHHHHH---HHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred -CCHHHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence 111112345555665 34457889999999999999543 3444444455788889999999999999999999553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.6 Score=44.61 Aligned_cols=88 Identities=18% Similarity=0.144 Sum_probs=52.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh--hhhhHhHHHHHHHHhc-C
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ--YKKTWCMQGVQAAWRL-G 1197 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~--~~~~l~~~~~EAAWrl-g 1197 (2037)
...+...|+|++|..+|+++++..|++......+-.|+..+|+++......+......|. ... .......+.-.+ |
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~l~~~~~~~~~ 91 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD-VWAAKADALRYIEG 91 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH-HHHHHHHHHTTCSS
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH-HHHHHHHHHHHHhC
Confidence 344556677777777777777777766666666666777777777666655544444443 221 222333455566 7
Q ss_pred ChhhHHHHhhcc
Q 000149 1198 RWDLMDEYLSGA 1209 (2037)
Q Consensus 1198 ~Wd~lee~l~~~ 1209 (2037)
+++...+++...
T Consensus 92 ~~~~A~~~~~~~ 103 (112)
T 2kck_A 92 KEVEAEIAEARA 103 (112)
T ss_dssp CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 776666655443
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=91.43 E-value=2.3 Score=46.81 Aligned_cols=152 Identities=13% Similarity=0.082 Sum_probs=96.8
Q ss_pred HHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hhh-hhhh
Q 000149 149 LNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DTV-LSSL 226 (2037)
Q Consensus 149 ~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~~-~~~~ 226 (2037)
-+.+.++|. ..+.+|+..+...|..+..+.......-....-+..|-.+|.+++..+|.+++.++..+.. ++. ...+
T Consensus 14 ~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 14 LPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 345666665 4578999999999999987755331100111223445556699999999999999998651 111 1111
Q ss_pred ccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-H-HHHHHHHHHhCCCCcchHHHHHHH
Q 000149 227 FLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-L-FLLILLVEQLDNPHVTVRMNASRL 304 (2037)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-~-~~l~~Li~~L~~~n~~~~~~a~~~ 304 (2037)
+. ...+..+-+.+. ..|+.+++..+.+++.|........+.+ . -++-.|++.|.++++-++..|..-
T Consensus 93 ~~----------~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 93 ID----------AGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp HH----------TTCHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HH----------CCCHHHHHHHHc-CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 113445555443 4578899999999999853221111111 1 134558888999999999999999
Q ss_pred HHHHHhhh
Q 000149 305 IRKSCFFH 312 (2037)
Q Consensus 305 i~~la~~~ 312 (2037)
|.++|...
T Consensus 162 L~~l~~~~ 169 (210)
T 4db6_A 162 LSNIASGG 169 (210)
T ss_dssp HHHHHTSC
T ss_pred HHHHHcCC
Confidence 99997653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=91.39 E-value=1.2 Score=48.06 Aligned_cols=108 Identities=18% Similarity=0.098 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-------h-------HHHHHHHHHHHcCCchHHHHHHHHHhhcCC
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-------N-------VHMEKAKLLWSTRRSDGAIAELQQNLLNKP 1412 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p-------~-------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~ 1412 (2037)
..+..|+..+....+.|+++.|..+-.+|..+.+. + +....+-.+...|+.++|+.....+|.-+.
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34678999999999999999999999998777544 1 667788889999999999999998876200
Q ss_pred cccccccccccccccCCCCCCCCCcccccccchhhhhHHHHH----HHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1413 VEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTL----LLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1413 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~----Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
. ..+-++..++++ .-+|.-+...|+ .++++..|++|+++.|.
T Consensus 89 -----~------------------------~~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 89 -----R------------------------RGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp -----H------------------------HCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred -----c------------------------cccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHHHHHhcCCC
Confidence 0 000112335666 888888877776 89999999999999885
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=91.28 E-value=49 Score=43.82 Aligned_cols=131 Identities=9% Similarity=0.069 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHH-HHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETAT-RAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~-~aLl~a~~~~~p~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
..+.|+.+|++....|..+.|. ..+.+|....+.+ +.+.+|++.+..|+.++|-..++.+++..+...-. +
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~------~ 415 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA------L 415 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH------H
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh------h
Confidence 3678999999999999998887 7777776655443 56789999999999999999999887632110000 0
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccchHHHHHHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL-QPMWEKGYFYMA 1494 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l-~~~weK~~~~la 1494 (2037)
.. -.|.+ ..+...-....+++++.+++.....+. .+.+.+.|..|.+. .+.-.+.|..+|
T Consensus 416 ~~--~~p~~------~~~~~~~~~~~~~vWi~y~~~erR~~~--l~~AR~vf~~A~~~~~~~~~~lyi~~A 476 (679)
T 4e6h_A 416 ME--DDPTN------ESAINQLKSKLTYVYCVYMNTMKRIQG--LAASRKIFGKCRRLKKLVTPDIYLENA 476 (679)
T ss_dssp HH--HSTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHTGGGSCTHHHHHHH
T ss_pred hh--ccCcc------hhhhhhhccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 00 00100 000001122346788899998877664 68888999999987 322234555444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.67 Score=44.25 Aligned_cols=102 Identities=13% Similarity=0.048 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
....|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+.++|+..++++++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------------- 71 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE------------- 71 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-------------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-------------
Confidence 35678889999999999999999999887765 345677889999999999999999999876321
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccc
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-GQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s-~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
. ...+.++..+|...... |+ .+++.+.|.++++..|.
T Consensus 72 ------~---------------~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 72 ------D---------------EYNKDVWAAKADALRYIEGK--EVEAEIAEARAKLEHHH 109 (112)
T ss_dssp ------C---------------TTCHHHHHHHHHHHTTCSSC--SHHHHHHHHHHGGGCCC
T ss_pred ------c---------------cchHHHHHHHHHHHHHHhCC--HHHHHHHHHHHhhcccC
Confidence 0 00134566677766555 54 67888888888887774
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=91.13 E-value=33 Score=42.77 Aligned_cols=119 Identities=12% Similarity=0.111 Sum_probs=75.9
Q ss_pred CChHHHHHHHHHHhhcCCChHHHHHHHH-H--HHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCccc
Q 000149 1363 GHYETATRAILEAQASGAPNVHMEKAKL-L--WSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLS 1439 (2037)
Q Consensus 1363 g~~~~A~~aLl~a~~~~~p~~~iE~AKL-L--W~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~ 1439 (2037)
+.++.|.....+|. .+.+.+...-+.+ + ...|+..+|+..++++.+. |
T Consensus 231 ~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~------g---------------------- 281 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA------D---------------------- 281 (452)
T ss_dssp CCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT------T----------------------
T ss_pred CCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC------C----------------------
Confidence 45666777776666 6677777777777 3 4567778888888877541 0
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCc
Q 000149 1440 NTQTLNEKRDIAKTLLLYSRWIHYTG---QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGP 1516 (2037)
Q Consensus 1440 ~~q~~~~~~~~Ak~~Ll~akwl~~s~---~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~ 1516 (2037)
.+.++..+|..+. .| ..+.+++.+.|++|. +....+++.+|..|..= .|.
T Consensus 282 ----------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G-------------~g~ 334 (452)
T 3e4b_A 282 ----------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRG-------------YLG 334 (452)
T ss_dssp ----------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTT-------------TTS
T ss_pred ----------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCC-------------CCC
Confidence 0345666776665 33 235777888888777 66777888888665310 000
Q ss_pred chhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1517 SEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1517 ~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
. .-...|+..|-+++..|+..
T Consensus 335 -~----~d~~~A~~~~~~Aa~~g~~~ 355 (452)
T 3e4b_A 335 -K----VYPQKALDHLLTAARNGQNS 355 (452)
T ss_dssp -S----CCHHHHHHHHHHHHTTTCTT
T ss_pred -C----cCHHHHHHHHHHHHhhChHH
Confidence 0 01236788888888877653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.09 E-value=0.67 Score=46.97 Aligned_cols=86 Identities=22% Similarity=0.197 Sum_probs=54.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcC
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg 1197 (2037)
...+...|+|++|..+|+.+++..|++ ......+-.|+..+|+|+......+......|....-+ .....+....|
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~ 113 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL-YRRSQALEKLG 113 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH-HHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH-HHHHHHHHHcC
Confidence 344567788888888888888877776 55556667777788888777666655444444332222 23344566777
Q ss_pred ChhhHHHHhh
Q 000149 1198 RWDLMDEYLS 1207 (2037)
Q Consensus 1198 ~Wd~lee~l~ 1207 (2037)
+|+.-.+++.
T Consensus 114 ~~~~A~~~~~ 123 (148)
T 2dba_A 114 RLDQAVLDLQ 123 (148)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7776655544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=91.08 E-value=1.7 Score=46.51 Aligned_cols=147 Identities=8% Similarity=-0.043 Sum_probs=101.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh--ccCChhHH-H
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLSLQDE-L 1121 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r--~~~~l~~q-i 1121 (2037)
.++....+-|.|..|+.+++.-+...+. ....+-.|..+|...++++........- ..++..-. .
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 78 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQS------------RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSL 78 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHT------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHH
Confidence 4677788899999999999987664332 1245778999999999999988876531 11211110 0
Q ss_pred ---HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhh-hHhHHHHHHHHhcC
Q 000149 1122 ---LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK-TWCMQGVQAAWRLG 1197 (2037)
Q Consensus 1122 ---l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~-~l~~~~~EAAWrlg 1197 (2037)
+.....+....|..+|+++++..|++...+..+-.|+...|+++......+......|++.. ........+...+|
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 11112223345899999999999999998888899999999999988888877777665422 11222345566677
Q ss_pred ChhhHH
Q 000149 1198 RWDLMD 1203 (2037)
Q Consensus 1198 ~Wd~le 1203 (2037)
+++...
T Consensus 159 ~~~~A~ 164 (176)
T 2r5s_A 159 QGNAIA 164 (176)
T ss_dssp SSCHHH
T ss_pred CCCcHH
Confidence 776543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=91.05 E-value=40 Score=42.48 Aligned_cols=170 Identities=11% Similarity=0.127 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHH-------hCCCC-----HHHHHHHHHHHHH-hccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcc
Q 000149 1451 AKTLLLYSRWIHY-------TGQKQ-----KEDVITLYSRVRE-LQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPS 1517 (2037)
Q Consensus 1451 Ak~~Ll~akwl~~-------s~~~~-----~~~i~~~Y~~A~~-l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~ 1517 (2037)
+++++.+|.|+.. .|+.. .+++.+.|.+|++ +.|+....|+.+|.++.+.-
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g---------------- 335 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM---------------- 335 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT----------------
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC----------------
Confidence 5678999999876 45533 3488999999997 89999999999998864321
Q ss_pred hhhhhchHHHHHHHHHHHhccCCcchhhhHHHHHHHhhhcCccccccCCCChhhhHHHHHHHHHHHHhhcCCCCchhhHh
Q 000149 1518 EKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLT 1597 (2037)
Q Consensus 1518 ~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lP~~~wlt 1597 (2037)
-...|...|-+++...+.... .+|..++....+ .+......+++++.+..-|......
T Consensus 336 ------~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~~~~---------~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 336 ------KYEKVHSIYNRLLAIEDIDPT-------LVYIQYMKFARR---------AEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp ------CHHHHHHHHHHHHHSSSSCHH-------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred ------CHHHHHHHHHHHhCccccCch-------HHHHHHHHHHHH---------hcCHHHHHHHHHHHHhccCCchHHH
Confidence 123578888888887665321 156555432110 0111223445666665544321111
Q ss_pred -hHHHHHhhccCCChHHHHHHHHHHHHHHHhcchh-HHHHHHHhhcCCcHHHHHHHHHHHHHHHhcCC
Q 000149 1598 -VLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQ-GLWIMAAVSKSTIPSRREAAAEIIQAAKKGSA 1663 (2037)
Q Consensus 1598 -~lPQLiSRI~h~~~~v~~~l~~Ii~~v~~~yPqq-~lw~l~~~~kS~~~~R~~~a~~Il~~~k~~~~ 1663 (2037)
..-++--. ...+ ......+..+.++.+|.. .+|.-.+.+... ..+.+.|..+++++....+
T Consensus 394 ~~~a~~~~~-~~~~---~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~-~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 394 VTAALMEYY-CSKD---KSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHH-HTCC---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHH-HcCC---hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-CCCHhhHHHHHHHHHhccC
Confidence 11112111 1223 355666777777788864 466555533222 3456678888888776543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=91.04 E-value=1.9 Score=41.73 Aligned_cols=93 Identities=15% Similarity=0.215 Sum_probs=48.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hh
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~ 1118 (2037)
.++....+.+.|..|+-+++..+..... ....+..+..+|...++++........ ...+. ..
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 81 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELDPN------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY 81 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcC------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHH
Confidence 5677888899999999999987654211 112344455555555555544443321 00110 11
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchh
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQ 1149 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~ 1149 (2037)
.....+...|++++|..+|+++++..|++..
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 112 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 1223344555555555555555555554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=90.90 E-value=0.67 Score=48.71 Aligned_cols=85 Identities=7% Similarity=-0.012 Sum_probs=56.0
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~ 1201 (2037)
..+...|+|++|..+|+++++..|++.....++=.|+..+|+|+..+...+......|+...-+. ....+-..+|+++.
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~lg~~~~~~g~~~~ 107 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF-HAAECLLQXGELAE 107 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH-HHHHHHHHTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH-HHHHHHHHcCCHHH
Confidence 44567788888888888888888887777777777788888887776666655544444322222 23455667777776
Q ss_pred HHHHhh
Q 000149 1202 MDEYLS 1207 (2037)
Q Consensus 1202 lee~l~ 1207 (2037)
-.+++.
T Consensus 108 A~~~~~ 113 (148)
T 2vgx_A 108 AESGLF 113 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=90.86 E-value=3 Score=48.32 Aligned_cols=57 Identities=14% Similarity=0.048 Sum_probs=37.4
Q ss_pred HHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhh
Q 000149 7 EILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLS 70 (2037)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (2037)
+.+--.|.|+...||..|+..+--+- ++. ....|..+.++....|+......||.+.
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~---~~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG---GQD----AVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC---CHH----HHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC---Cch----HHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 33445678888999999887765442 443 4444445555666778888777777653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=90.84 E-value=3 Score=46.03 Aligned_cols=67 Identities=12% Similarity=0.096 Sum_probs=55.0
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWC 1186 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~ 1186 (2037)
....|...|++++|..+|+++++..|++......+=.|+..+|+++......+..+...|+....+.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 126 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI 126 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 4566789999999999999999999999998888888999999999888887777666665444333
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.69 E-value=5.5 Score=46.45 Aligned_cols=141 Identities=18% Similarity=0.109 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~ 1419 (2037)
...++-+.+.+.+..|+++.|..+..+|... +++ .+...-+.++...|+.++|+..+++++.-.+.
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~------ 109 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH------ 109 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------
Confidence 3455666678889999999999988887554 333 35567789999999999999999998762110
Q ss_pred ccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccch------HHHHHH
Q 000149 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-GQKQKEDVITLYSRVRELQPMW------EKGYFY 1492 (2037)
Q Consensus 1420 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s-~~~~~~~i~~~Y~~A~~l~~~w------eK~~~~ 1492 (2037)
..+....+.++..+|.-+... |+ .++++..|++|+++.|.- ..++..
T Consensus 110 ------------------------~g~~~~~a~~~~~lg~~~~~~lg~--~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 110 ------------------------RGQFRRGANFKFELGEILENDLHD--YAKAIDCYELAGEWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp ------------------------TTCHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------cCCHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 001223467788888877764 65 899999999999998753 244556
Q ss_pred HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1493 MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1493 la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
+|..|-+. |. ...|+..|-+++...++.
T Consensus 164 lg~~~~~~--------------g~--------~~~A~~~~~~al~~~~~~ 191 (292)
T 1qqe_A 164 CADLKALD--------------GQ--------YIEASDIYSKLIKSSMGN 191 (292)
T ss_dssp HHHHHHHT--------------TC--------HHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHh--------------CC--------HHHHHHHHHHHHHHHhcC
Confidence 66554211 11 136889999999876543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=90.61 E-value=0.48 Score=49.97 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=64.4
Q ss_pred hHHHHHHHhhcCHHHHHHHHHHHHcc------------------CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1118 QDELLSNKKSGNWAEVFTSCEQALQM------------------EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~------------------~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
.++...+-+.|+|++|..+|+++++. .|.+.....++-.|+..+|+|+..+.+.+..+...|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 34556677889999999999999887 455556667777899999999988888777666556
Q ss_pred hhhhhHhHHHHHHHHhcCChhhHHHHhhc
Q 000149 1180 QYKKTWCMQGVQAAWRLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1180 ~~~~~l~~~~~EAAWrlg~Wd~lee~l~~ 1208 (2037)
....-+. ....+--.+|+|+.-.+++..
T Consensus 95 ~~~~a~~-~~g~~~~~~g~~~~A~~~~~~ 122 (162)
T 3rkv_A 95 TNEKALF-RRAKARIAAWKLDEAEEDLKL 122 (162)
T ss_dssp TCHHHHH-HHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHhcHHHHHHHHHH
Confidence 5544333 234566778888876665443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.61 E-value=2.5 Score=44.78 Aligned_cols=104 Identities=13% Similarity=0.130 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHH-HHHcCCc--hHHHHHHHHHhhcCCcccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKL-LWSTRRS--DGAIAELQQNLLNKPVEVVGSTAIS 1422 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKL-LW~~g~~--~~Ai~~L~~~i~~~~~~~~g~~~~~ 1422 (2037)
....|...+.+....|.++.|..++.++.... .+.+....|.+ +...|+. .+|+..++.++...|
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p---------- 112 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS---------- 112 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC----------
Confidence 35689999999999999999999999987664 45677788888 6688998 999999999876321
Q ss_pred cccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH
Q 000149 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG 1489 (2037)
Q Consensus 1423 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~ 1489 (2037)
. ...++..+|......|+ .+++...|.++++++|.....
T Consensus 113 ---------~-----------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 113 ---------N-----------------EITALMLLASDAFMQAN--YAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp ---------T-----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCCTTSCH
T ss_pred ---------C-----------------cHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhCCCCccH
Confidence 0 03456667777766665 788999999999999976443
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=90.56 E-value=1.3 Score=48.82 Aligned_cols=147 Identities=11% Similarity=0.109 Sum_probs=97.4
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhh--hhhh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDT--VLSS 225 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~--~~~~ 225 (2037)
+.+.++|.++ +.+|+-.++.+|..+..+.... ..++ ..-+..|-.+|.+++..+|..++.++..+..+. ....
T Consensus 57 ~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (210)
T 4db6_A 57 PALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (210)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHH--CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4466777665 7789999999999998765432 1111 123345555669999999999999999975110 0000
Q ss_pred hccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-H-HHHHHHHHHhCCCCcchHHHHHH
Q 000149 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-L-FLLILLVEQLDNPHVTVRMNASR 303 (2037)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-~-~~l~~Li~~L~~~n~~~~~~a~~ 303 (2037)
+. ....+..+-+.+.. .|+.+++..+.+++.++.......+.+ . -++-.|++.|.++++-++..|..
T Consensus 134 ~~----------~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 202 (210)
T 4db6_A 134 VI----------DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202 (210)
T ss_dssp HH----------HTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HH----------HcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 00 12356666665544 588899999999999854311122221 1 13446888889999999999999
Q ss_pred HHHHHHh
Q 000149 304 LIRKSCF 310 (2037)
Q Consensus 304 ~i~~la~ 310 (2037)
-|.++|.
T Consensus 203 aL~~l~~ 209 (210)
T 4db6_A 203 ALEKLQS 209 (210)
T ss_dssp HHHHHCC
T ss_pred HHHHHhc
Confidence 9988864
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=90.44 E-value=2.4 Score=47.54 Aligned_cols=123 Identities=20% Similarity=0.120 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CC-C---hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS------GA-P---NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~------~~-p---~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~ 1416 (2037)
....+|...+.+....|+++.|...+.++... +. | .+....|.+++..|+..+|+..++++++.....
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-- 118 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-- 118 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH--
Confidence 55778999999999999999999998887654 22 2 356678899999999999999999987631100
Q ss_pred cccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------ccchHH
Q 000149 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL--------QPMWEK 1488 (2037)
Q Consensus 1417 g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l--------~~~weK 1488 (2037)
...+.+..+.++..+|......|+ .+++...|.+++++ .|....
T Consensus 119 --------------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 119 --------------------------LGKFHPDVAKQLNNLALLCQNQGK--AEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp --------------------------HCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred --------------------------cCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 001123457788888887766665 88999999999998 777778
Q ss_pred HHHHHHhhhHH
Q 000149 1489 GYFYMAKYCDD 1499 (2037)
Q Consensus 1489 ~~~~la~y~d~ 1499 (2037)
+++.+|..|-.
T Consensus 171 ~~~~la~~~~~ 181 (283)
T 3edt_B 171 TKNNLASCYLK 181 (283)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877643
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=90.20 E-value=76 Score=44.23 Aligned_cols=138 Identities=13% Similarity=0.044 Sum_probs=82.5
Q ss_pred HHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhh--cccHHHHHHHHHHHhHhhhhhhhhhhcccccccc---chhhHHH
Q 000149 167 SCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLL--NKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASS---RSNELKL 241 (2037)
Q Consensus 167 ~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~--~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 241 (2037)
.++.+++..|...+.--..++...|.+-+..-+. ..+-..++|.|=.++++- | .... ++.--.+
T Consensus 454 ~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa----------g-~~~~~~E~~~Lp~v 522 (1073)
T 3gjx_A 454 NLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS----------G-AMHEEDEKRFLVTV 522 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT----------T-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH----------C-cCCcccccchHHHH
Confidence 4566666665442210001223334443333322 234778899988888832 1 1111 1111223
Q ss_pred HHHHHHHhhhcC--C--hhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhcc
Q 000149 242 LDVIKLAFTAAD--D--PLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKG 315 (2037)
Q Consensus 242 ~~~~~~~~~~~~--d--~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~ 315 (2037)
+..+-......+ | +-+.=+.+-++|+-.+=...+.+.+.-++-.|++.+..+|+-|...|..-+.++|..|.+.
T Consensus 523 i~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 523 IKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 2 2355556668888655555689999999999999999999999999999999998888764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.12 E-value=0.72 Score=44.48 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=51.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
...+...|+|++|..+|+++++..|++.....++=.|+..+|+|+..+...+..+...|+
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 11 GNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 455778999999999999999999999888888889999999999888877766655554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=89.59 E-value=2 Score=51.57 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=79.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCcccc---CCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC---
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEK---SGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS--- 1116 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~---~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~--- 1116 (2037)
.++...++-+.|..|+.+++..+............. ........+..|..+|..+++.+.+.-.... ...++
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 578888899999999999999876543210000000 0000013456777788888888877666542 11121
Q ss_pred -hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHH
Q 000149 1117 -LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAM 1167 (2037)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~l 1167 (2037)
.......|...|++++|..+|+++++..|++......+-.|+..+|+++..
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 223455677888888888888888888888877777777777777777644
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=89.14 E-value=1.1 Score=52.45 Aligned_cols=87 Identities=13% Similarity=0.034 Sum_probs=67.7
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
....+...|+|++|..+|+++++..|++.....++-.|+..+|+|+......+......|....-+. ....+...+|+|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~ 88 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF-FLGQCQLEMESY 88 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH-HHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCH
Confidence 4556788999999999999999999999888888889999999999988888777666665444333 334566778888
Q ss_pred hhHHHHhh
Q 000149 1200 DLMDEYLS 1207 (2037)
Q Consensus 1200 d~lee~l~ 1207 (2037)
+.-.+++.
T Consensus 89 ~~A~~~~~ 96 (281)
T 2c2l_A 89 DEAIANLQ 96 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87665543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=89.02 E-value=28 Score=41.68 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~-----p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~ 1416 (2037)
...+.+|...|.+....|.++.|.....+|... +. ..+...-+.++...|+.++|+..++++++-.+
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---- 215 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE---- 215 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----
Confidence 356788999999999999999999998887654 22 12455567888999999999999999876211
Q ss_pred cccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----c-cchHHHH
Q 000149 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL-----Q-PMWEKGY 1490 (2037)
Q Consensus 1417 g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l-----~-~~weK~~ 1490 (2037)
...+....+.++..+|.-....|+ .+++++.|++|+++ + |....++
T Consensus 216 --------------------------~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 216 --------------------------AEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp --------------------------HTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred --------------------------HcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 001234567888888888877775 89999999999994 5 6667788
Q ss_pred HHHHhhhH
Q 000149 1491 FYMAKYCD 1498 (2037)
Q Consensus 1491 ~~la~y~d 1498 (2037)
+.+|..|-
T Consensus 268 ~~l~~~~~ 275 (383)
T 3ulq_A 268 FLITQIHY 275 (383)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887663
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=88.97 E-value=7.4 Score=46.81 Aligned_cols=113 Identities=8% Similarity=0.015 Sum_probs=84.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1354 QYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1354 ~~AklARKag~~~~A~~aLl~a~~~----~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
..+......|.++.|.....+|... +++ .+....|.+++..|+..+|+..++++++-.+.
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------------ 175 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE------------ 175 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------------
Confidence 3899999999999999999998764 322 35667788999999999999999998763110
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH------HHHHHHHhhh
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE------KGYFYMAKYC 1497 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we------K~~~~la~y~ 1497 (2037)
. .......+.++..+|.-....|+ .+++...|.+|+++.+... .+++.+|..|
T Consensus 176 -------~----------~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 234 (383)
T 3ulq_A 176 -------H----------EAYNIRLLQCHSLFATNFLDLKQ--YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK 234 (383)
T ss_dssp -------C----------STTHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -------C----------ccchHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 0 00123557888889988877776 8899999999998866443 4666677655
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=88.86 E-value=3.9 Score=48.11 Aligned_cols=156 Identities=6% Similarity=-0.039 Sum_probs=89.3
Q ss_pred HHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH----h-ccCC-----
Q 000149 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL----H-KSLS----- 1116 (2037)
Q Consensus 1047 a~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~----r-~~~~----- 1116 (2037)
+..-...+.|..|+-+++..+.-.....++. ..-..+..+..+|..+++++........ . ...+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLF------HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4455667889999998887654322111110 0013456677777777777765554321 1 0001
Q ss_pred --hhHHHHHHHhhcCHHHHHHHHHHHHccCCCc------hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhh----h
Q 000149 1117 --LQDELLSNKKSGNWAEVFTSCEQALQMEPTS------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK----T 1184 (2037)
Q Consensus 1117 --l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~------~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~----~ 1184 (2037)
...-...|+. |++++|..+|+++++..|.. ......+-.++..+|+|+..+.+.+......++... .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 1122345677 99999999999999765432 233445667788899999887776654432221111 0
Q ss_pred -HhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1185 -WCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1185 -l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
...-...+...+|+++.-.+++...
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111223445569998877766553
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=88.79 E-value=1.1 Score=42.64 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchh-hhhhHHHHHHhccChHHHHHHhhhhhccchhh
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQ-RHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~-~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~ 1181 (2037)
.+...+...|+|++|..+|+++++..|++.. ....+=.|+..+|+++......+..+...|+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3456678899999999999999999999988 87788889999999998887777665555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=88.66 E-value=3.9 Score=41.24 Aligned_cols=119 Identities=11% Similarity=0.037 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~ 1418 (2037)
..+.+|...+.+....|.++.|...+.++... +++ .+....|.+++..|+..+|+..+++++...+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----- 81 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ----- 81 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----
Confidence 45678899999999999999999988877544 332 35667899999999999999999998752110
Q ss_pred cccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------HHHHHH
Q 000149 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------EKGYFY 1492 (2037)
Q Consensus 1419 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w------eK~~~~ 1492 (2037)
..+....+.++..+|......|+ .+++...|.+++++.+.. ..+++.
T Consensus 82 -------------------------~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 82 -------------------------LKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------hCCcHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 01123457778888888877765 788889999988875432 234445
Q ss_pred HHhhh
Q 000149 1493 MAKYC 1497 (2037)
Q Consensus 1493 la~y~ 1497 (2037)
+|..|
T Consensus 135 la~~~ 139 (164)
T 3ro3_A 135 LGNAY 139 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=88.10 E-value=5.1 Score=44.41 Aligned_cols=137 Identities=10% Similarity=-0.029 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcC----CchHHHHHHHHHhhcCCcccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTR----RSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~g----~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~ 1424 (2037)
...+...+.+....|.++.|...+.+|...+.+.+...-+.++.. | +..+|+..++.+.+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g------------- 83 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG------------- 83 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT-------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC-------------
Confidence 457888889999999999999999999999999999999988887 6 7899999999885420
Q ss_pred cccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhcc--chHHHHHHHHhhhHHH
Q 000149 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHY-TG-QKQKEDVITLYSRVRELQP--MWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1425 ~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~-s~-~~~~~~i~~~Y~~A~~l~~--~weK~~~~la~y~d~l 1500 (2037)
.+.++..+|..+.. .+ ..+.+++++.|++|.+..+ ....+++.+|..|..-
T Consensus 84 -------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 84 -------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp -------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred -------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 03456666665532 11 4567888888999988887 4578889998876421
Q ss_pred HHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhcc-CCcc
Q 000149 1501 LVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHR-GHKN 1542 (2037)
Q Consensus 1501 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~-g~~~ 1542 (2037)
. . .. .-...|+..|-+++.. |+..
T Consensus 139 ~---------g--~~-------~d~~~A~~~~~~A~~~~~~~~ 163 (212)
T 3rjv_A 139 V---------H--GP-------EDDVKASEYFKGSSSLSRTGY 163 (212)
T ss_dssp S---------S--SS-------CCHHHHHHHHHHHHHTSCTTH
T ss_pred C---------C--CC-------CCHHHHHHHHHHHHHcCCCHH
Confidence 0 0 00 0123678888888877 5443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=88.05 E-value=1.2 Score=41.15 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=45.7
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
..+...|+|++|..+|+++++..|++......+-.|+..+|+++....+.+......|
T Consensus 17 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 4466789999999999999998888887777778888899999887776665544444
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.00 E-value=0.94 Score=54.62 Aligned_cols=114 Identities=15% Similarity=0.045 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-------------------HHHHHHHHHHHcCCchHHHHHHHHH
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-------------------VHMEKAKLLWSTRRSDGAIAELQQN 1407 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~-------------------~~iE~AKLLW~~g~~~~Ai~~L~~~ 1407 (2037)
..+..|...+..+.+.|+++.|.....+|....+.. +....|..+...|+..+|+..++.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 346678899999999999999999998887664332 5567788899999999999999988
Q ss_pred hhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000149 1408 LLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2037)
Q Consensus 1408 i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~we 1487 (2037)
+...+ ..++++..+|..+...|+ .+++...|++|++++|...
T Consensus 257 l~~~p------------------------------------~~~~a~~~lg~a~~~~g~--~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 257 LTEEE------------------------------------KNPKALFRRGKAKAELGQ--MDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHCT------------------------------------TCHHHHHHHHHHHHTTTC--HHHHHHHHHHTTC------
T ss_pred HHhCC------------------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCH
Confidence 76211 115567777777766554 7889999999999999888
Q ss_pred HHHHHHHhhhH
Q 000149 1488 KGYFYMAKYCD 1498 (2037)
Q Consensus 1488 K~~~~la~y~d 1498 (2037)
.++..++....
T Consensus 299 ~a~~~L~~l~~ 309 (338)
T 2if4_A 299 AIRRELRALAE 309 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 88888776543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=87.93 E-value=50 Score=39.10 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=71.0
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCCC------hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCC
Q 000149 1356 AKLCRLAGHYETATRAILEAQASGAP------NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSL 1429 (2037)
Q Consensus 1356 AklARKag~~~~A~~aLl~a~~~~~p------~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~ 1429 (2037)
+.+....|.++.|...+.++...... ......|+++...|+..+|+..++..+...+.
T Consensus 222 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~---------------- 285 (373)
T 1hz4_A 222 VIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS---------------- 285 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh----------------
Confidence 45577899999999998887654321 13456789999999999999999988652110
Q ss_pred CCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1430 VPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1430 ~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
.......++++..+|..+...|+ .+++...|.+|..+.+.
T Consensus 286 --------------~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 286 --------------LRLMSDLNRNLLLLNQLYWQAGR--KSDAQRVLLDALKLANR 325 (373)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHH
T ss_pred --------------CcchhhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhcc
Confidence 00112346678888988888886 78888889988887664
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.91 E-value=63 Score=40.25 Aligned_cols=136 Identities=9% Similarity=0.015 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCChHHHHHHHHHHHc-----CCchHHHHHHHHHhhcCCccccccc
Q 000149 1349 GNCWLQYAKLCRL----AGHYETATRAILEAQASGAPNVHMEKAKLLWST-----RRSDGAIAELQQNLLNKPVEVVGST 1419 (2037)
Q Consensus 1349 ~~~WL~~AklARK----ag~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~~-----g~~~~Ai~~L~~~i~~~~~~~~g~~ 1419 (2037)
...+...+.+..+ .+..+.|...+.+|...+.+.+...-+.++... ++..+|+..++.+++..
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-------- 326 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG-------- 326 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--------
Confidence 3456677777777 788889998888888888888888888888887 78889999888876420
Q ss_pred ccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG-QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1420 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~-~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
.+.++..+|......| ..+.+++++.|++|.+. ....+++.+|..|.
T Consensus 327 ------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 327 ------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALL 374 (490)
T ss_dssp ------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred ------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 0235666676665543 12467888899999887 35778999998763
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1499 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
.-. . .. .-...|+..|-+++..|+..
T Consensus 375 ~g~---------g--~~-------~~~~~A~~~~~~A~~~~~~~ 400 (490)
T 2xm6_A 375 QGK---------G--VK-------KDEQQAAIWMRKAAEQGLSA 400 (490)
T ss_dssp HTS---------S--SC-------CCHHHHHHHHHHHHHTTCHH
T ss_pred cCC---------C--CC-------CCHHHHHHHHHHHHhCCCHH
Confidence 210 0 00 11246899999999887653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=87.55 E-value=0.83 Score=57.98 Aligned_cols=110 Identities=12% Similarity=-0.005 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
+..|...|..+.+.|+++.|..+..+|.+..+ +.+....|..+...|+.++|+..++++++..|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------------- 71 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------------- 71 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------
Confidence 44556667778889999999999999987754 45677889999999999999999999876311
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
..++++..+|.-+...|+ .+++.+.|++|++++|....+|..+|..
T Consensus 72 ----------------------~~~~~~~~lg~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 72 ----------------------KYIKGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 114466667776666665 7889999999999999988888888765
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=87.27 E-value=1.3 Score=42.92 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=44.9
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~g 1173 (2037)
..+...|+|++|..+|+++++..|++......+=.|+..+|+++......+.
T Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 15 QEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4467889999999999999999999998888888999999999987665553
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=87.26 E-value=3.5 Score=37.95 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHH
Q 000149 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2037)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~ 1462 (2037)
.....|..++..|+..+|+..+++++...+ . .+.++..+|..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-------------------~-----------------~~~~~~~l~~~~~ 54 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-------------------N-----------------NAEAWYNLGNAYY 54 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------T-----------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-------------------C-----------------CHHHHHHHHHHHH
Confidence 445566777777777777777777664211 0 0234555565555
Q ss_pred HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1463 YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1463 ~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
..++ .+++++.|.++++++|....+++.+|..+
T Consensus 55 ~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 55 KQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhh--HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5554 67777778888888887777777777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.11 E-value=2.7 Score=40.26 Aligned_cols=45 Identities=7% Similarity=-0.090 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------HHHHHHHHhhhHH
Q 000149 1453 TLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------EKGYFYMAKYCDD 1499 (2037)
Q Consensus 1453 ~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w------eK~~~~la~y~d~ 1499 (2037)
++..+|..+...|+ .+++++.|.++++++|.. .++++.+|..+..
T Consensus 40 ~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~ 90 (111)
T 2l6j_A 40 GYSNKAMALIKLGE--YTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGA 90 (111)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHH
Confidence 34444544444443 556666666666666665 5566666665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=86.94 E-value=27 Score=40.31 Aligned_cols=118 Identities=11% Similarity=-0.028 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPN--------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~--------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
...|+.-+......|.++.|...+.++....... +..-.+.++..+|+.++|+..++++++.....
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------ 148 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG------ 148 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC------
Confidence 4567788888999999999999888776543221 12234556677889999999999987631100
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---ccchH----HHHHHH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL---QPMWE----KGYFYM 1493 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l---~~~we----K~~~~l 1493 (2037)
.+....+.++..+|......|+ .++++..|.+|.++ .+... .+++.+
T Consensus 149 ------------------------~~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nl 202 (293)
T 2qfc_A 149 ------------------------IDVYQNLYIENAIANIYAENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp ------------------------SCTTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred ------------------------CchHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcCccccchHHHHHhH
Confidence 0111346778888887777665 88999999999854 33221 467777
Q ss_pred HhhhH
Q 000149 1494 AKYCD 1498 (2037)
Q Consensus 1494 a~y~d 1498 (2037)
|..|.
T Consensus 203 g~~y~ 207 (293)
T 2qfc_A 203 AKALY 207 (293)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=86.80 E-value=2 Score=54.13 Aligned_cols=89 Identities=9% Similarity=0.092 Sum_probs=68.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCc---------------hhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS---------------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT 1184 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~---------------~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~ 1184 (2037)
+...+.+.|+|++|..+|+++++..|++ ...+..+=.|+.++|+|+..+.+.+..+...|....-
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a 353 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG 353 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Confidence 4556778999999999999999988877 4566678889999999999888888776666654433
Q ss_pred HhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1185 WCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1185 l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
+. ....|...+|+|+.-.+++..+
T Consensus 354 ~~-~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 354 LY-RRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HH-HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHccCHHHHHHHHHHH
Confidence 33 3456788899999887776654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=86.74 E-value=3.7 Score=47.87 Aligned_cols=100 Identities=11% Similarity=0.045 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
+..|...|....+.|+++.|...+.+|.... .+.+....|..+...|+..+|+..++++++..|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------- 69 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------------- 69 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------
Confidence 5678899999999999999999999987764 455777889999999999999999998875211
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
..++++..+|.-+...|+ .+++.+.|.+|++++|..
T Consensus 70 ----------------------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 70 ----------------------QSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHT
T ss_pred ----------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccc
Confidence 114566777777666664 788888899998888743
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=86.58 E-value=4.2 Score=45.07 Aligned_cols=147 Identities=13% Similarity=0.080 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHcC----ChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCcccccccc
Q 000149 1349 GNCWLQYAKLCRLAG----HYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1349 ~~~WL~~AklARKag----~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
...+...+.+... | .++.|...+.+|...+.+.+...-+.++.. .++..+|+..++++++..+
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-------- 120 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE-------- 120 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT--------
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC--------
Confidence 3456677777666 5 789999999999888999999999998887 7889999999998864210
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-G-QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s-~-~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d 1498 (2037)
....+.++..+|..+..- + ..+.+++.+.|++|.+. +....+++.+|..|.
T Consensus 121 --------------------------~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 121 --------------------------SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp --------------------------SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred --------------------------CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 002256788888877552 2 45689999999999998 445668999998773
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcchhhhH
Q 000149 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQAL 1547 (2037)
Q Consensus 1499 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~~~q~l 1547 (2037)
.-. .|... .-...|+..|-+++..|+......+
T Consensus 174 ~g~------------gg~~~----~d~~~A~~~~~~A~~~g~~~A~~~l 206 (212)
T 3rjv_A 174 QGE------------KGFIE----PNKQKALHWLNVSCLEGFDTGCEEF 206 (212)
T ss_dssp HCB------------TTTBC----CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCC------------CCCCC----CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 210 00000 0124689999999999987554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.44 E-value=2.9 Score=45.42 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=57.4
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCch----------------hhhhhHHHHHHhccChHHHHHHhhhhhccchhhhh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSV----------------QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK 1183 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~----------------~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~ 1183 (2037)
....+...|+|++|..+|+++++..|++. .....+-.|+..+|+|+..+.+.+......|....
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 123 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK 123 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH
Confidence 34456678888888888888888777654 44556667788888888777776655554444332
Q ss_pred hHhHHHHHHHHhcCChhhHHHHhhc
Q 000149 1184 TWCMQGVQAAWRLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1184 ~l~~~~~EAAWrlg~Wd~lee~l~~ 1208 (2037)
-+. ....+...+|+|+.-.+++..
T Consensus 124 ~~~-~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 124 ALY-KLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHH-HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHHcccHHHHHHHHHH
Confidence 222 234455677888776665544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=86.19 E-value=0.41 Score=47.75 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=38.3
Q ss_pred hcCHHHHHHHHHHHHcc---CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhHH
Q 000149 1127 SGNWAEVFTSCEQALQM---EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMD 1203 (2037)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq~---~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~le 1203 (2037)
.|++++|..+|+++++. .|++.....++-.|+..+|+++..+...+......|+...- ......+-..+|+++.-.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL-RVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHHcCCHHHHH
Confidence 45666666666666665 35555555555556666666665555555444444433221 122234445556655544
Q ss_pred HH
Q 000149 1204 EY 1205 (2037)
Q Consensus 1204 e~ 1205 (2037)
++
T Consensus 82 ~~ 83 (117)
T 3k9i_A 82 EL 83 (117)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=85.85 E-value=4.7 Score=48.59 Aligned_cols=157 Identities=10% Similarity=-0.015 Sum_probs=100.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH-----hccCC---
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-----HKSLS--- 1116 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~-----r~~~~--- 1116 (2037)
..+.....-|.|..|+.+++.-..-.....++ ......+..|..+|..+++++........ ....+
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDD------IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 35667788899999999999876533211111 00124567899999999999987766431 11111
Q ss_pred -----hhHHHHHHHhhcCHHHHHHHHHHHHccCC---Cc---hhhhhhHHHHHHhccChHHHHHHhhhhhc-----cchh
Q 000149 1117 -----LQDELLSNKKSGNWAEVFTSCEQALQMEP---TS---VQRHSDVLNCLLNMCHLQAMVTHVDGLIS-----RIPQ 1180 (2037)
Q Consensus 1117 -----l~~qil~~E~~G~W~~A~~~YE~~Lq~~p---~~---~~~~~glL~CL~~Lgq~~~ll~~~~gl~~-----~~p~ 1180 (2037)
...-...|...|+|++|..+|+++++..+ +. .....++=.|+..+|+++....+.+.... ..|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 11234567899999999999999987422 11 12234455678889999988777765544 3343
Q ss_pred hhhhHhHHHHHHHHhcCChhhHHHHhhc
Q 000149 1181 YKKTWCMQGVQAAWRLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1181 ~~~~l~~~~~EAAWrlg~Wd~lee~l~~ 1208 (2037)
. ......-..+....|+++...+++..
T Consensus 260 ~-~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 260 L-PKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3 22223345667788998887766543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=85.74 E-value=1.2 Score=56.52 Aligned_cols=87 Identities=11% Similarity=0.105 Sum_probs=68.6
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhh
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~ 1201 (2037)
..+...|+|++|..+|+++++..|++......+-.|+.++|+|+......+......|....-+. ....+...+|+|+.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~-~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY-RRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH-HHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCHHH
Confidence 34668899999999999999999999888888889999999999888887776666665444333 33556778999988
Q ss_pred HHHHhhcc
Q 000149 1202 MDEYLSGA 1209 (2037)
Q Consensus 1202 lee~l~~~ 1209 (2037)
-.+++..+
T Consensus 93 A~~~~~~a 100 (477)
T 1wao_1 93 ALRDYETV 100 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.63 E-value=1.5 Score=46.53 Aligned_cols=48 Identities=6% Similarity=0.027 Sum_probs=21.8
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000149 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~g 1173 (2037)
..|++++|..+|+.+++..|++......+-.|+...|+++....+.+.
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 69 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQ 69 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344555555555555555555544444444555555555544444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=85.51 E-value=2.4 Score=45.74 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhh
Q 000149 1451 AKTLLLYSRWIHYTGQKQ--------KEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWW 1522 (2037)
Q Consensus 1451 Ak~~Ll~akwl~~s~~~~--------~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~ 1522 (2037)
+.++..+|.-+.+.++.+ .++++..|.+|++++|+...+|+.+|.-|.++-.- .++ .....
T Consensus 36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l----------~P~-~~~a~ 104 (158)
T 1zu2_A 36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL----------TPD-ETEAK 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH----------CCC-HHHHH
T ss_pred HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc----------Ccc-hhhhh
Confidence 334454555444444332 67899999999999999999999999766544210 000 00111
Q ss_pred chHHHHHHHHHHHhccCCcc
Q 000149 1523 FYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1523 ~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
.....|+.+|-+|+...+++
T Consensus 105 g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 105 HNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTC
T ss_pred ccHHHHHHHHHHHHHhCCCC
Confidence 23457999999999988764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=85.08 E-value=1.1 Score=44.41 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=48.5
Q ss_pred HHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
..|...|++++|..+|+++++..|++......+-.|+..+|+++......+..+...|
T Consensus 35 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 35 STFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4577899999999999999999999998888888999999999988777665544333
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=84.98 E-value=6.3 Score=43.42 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=34.9
Q ss_pred HHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000149 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2037)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2037)
.-+.+.++|.+ .+.+|+..++..|.++-.. + .+.-|..++.|++..||.++...+..+
T Consensus 51 ~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~~---~--------~~~~L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 51 AVEPLIKALKD-EDAWVRRAAADALGQIGDE---R--------AVEPLIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp GHHHHHHHTTC-SCHHHHHHHHHHHHHHCCG---G--------GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHhhCCH---H--------HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33445666654 4677888887777776321 1 111222334788888888888777764
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=84.81 E-value=47 Score=38.02 Aligned_cols=128 Identities=16% Similarity=0.054 Sum_probs=83.4
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2037)
+.++|-+ .+..|+...+..|.++- ..+ -+.-|..++.|++..||.++...+..+- .
T Consensus 28 L~~~L~~-~~~~vr~~A~~~L~~~~---~~~--------~~~~L~~~l~d~~~~vR~~A~~aL~~l~-----------~- 83 (280)
T 1oyz_A 28 LFRLLDD-HNSLKRISSARVLQLRG---GQD--------AVRLAIEFCSDKNYIRRDIGAFILGQIK-----------I- 83 (280)
T ss_dssp HHHHTTC-SSHHHHHHHHHHHHHHC---CHH--------HHHHHHHHHTCSSHHHHHHHHHHHHHSC-----------C-
T ss_pred HHHHHHc-CCHHHHHHHHHHHHccC---Cch--------HHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------c-
Confidence 5556654 56788888888888763 222 1223344569999999999998887632 0
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Q 000149 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2037)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~l 308 (2037)
.......++..+.+.+..-+|+.+....+.++|.++.... +...-++-.|+..|.++++.||..|..-+-.+
T Consensus 84 --~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~---~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 84 --CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP---IYSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp --CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred --ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC---cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 0111223444455445566789999999999999853221 11112345577888999999999888877655
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=84.16 E-value=7.6 Score=46.44 Aligned_cols=153 Identities=16% Similarity=0.077 Sum_probs=98.2
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCCh-----h
Q 000149 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSL-----Q 1118 (2037)
Q Consensus 1044 ~lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l-----~ 1118 (2037)
.++|.+....|.|..||..++..+..... + ...+.+-.+..||-.++.+|-+.-+.+.....+. +
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~---~-------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEA---E-------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCS---T-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC---c-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 37889999999999999999998653210 0 1235677899999999999999999864332222 1
Q ss_pred HHHH-----H--HHhhc--CHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhh--------
Q 000149 1119 DELL-----S--NKKSG--NWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY-------- 1181 (2037)
Q Consensus 1119 ~qil-----~--~E~~G--~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~-------- 1181 (2037)
+.++ . .-..| +.++|...|+.+.+..|+ ......+++|...+|+|+.+-...+-+....|+.
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 2221 1 12224 999999999998887775 2223456669999999997766655443332210
Q ss_pred -hhhHhHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1182 -KKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1182 -~~~l~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
..+...-.+-.+..+|+ ..++++.+.
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 11112223445666786 446666554
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=83.93 E-value=45 Score=44.97 Aligned_cols=347 Identities=10% Similarity=0.092 Sum_probs=170.1
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCchh---hhh--hhhHHHHHHHHHhhcc--cHHHHHHHHHHHhHhhhhhh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV---LLK--TRSEWIKCIEFLLLNK--RKAIRDAFCTQIGYFLQDTV 222 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~---~~~--~~~~w~~~~~~~~~~~--~r~vR~a~~~~~~~~~~~~~ 222 (2037)
+.+-.+|. .....++.....+|.++-.-+..|- ..+ .-.+-++.+-.+|.++ |..+|..++..+...-.++-
T Consensus 333 ~~L~~Ll~-s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~ 411 (810)
T 3now_A 333 DILKRLYH-SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAE 411 (810)
T ss_dssp HHHHHHTT-CSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcH
Confidence 44444444 4446788888888888754322111 111 1123344334444777 88899999999888641111
Q ss_pred hhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc---------------------------
Q 000149 223 LSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH--------------------------- 275 (2037)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~--------------------------- 275 (2037)
+-. .-.....++-.+-+.+. ..|+.++.-.+-+++-|..+.+.+
T Consensus 412 vk~--------~lv~d~g~Ip~LV~LL~-s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~ 482 (810)
T 3now_A 412 CKE--------KLIEDKASIHALMDLAR-GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVD 482 (810)
T ss_dssp HHH--------HHHHCHHHHHHHHHHHH-TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHH
T ss_pred HHH--------HHHHccchHHHHHHHhC-CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHH
Confidence 100 00111345555555333 467889988899998885533211
Q ss_pred ------chhHH-HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchHH---
Q 000149 276 ------SQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIM--- 345 (2037)
Q Consensus 276 ------~e~~~-~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~~--- 345 (2037)
..++. -++-.|+.-|.++++-++-.|..-|.++|.... .+..-+.....++++.-|.+....
T Consensus 483 ~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~--------~r~~Vv~~Gaip~Lv~LL~s~~~~~k~ 554 (810)
T 3now_A 483 FINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE--------LRGKVVQEGGVKALLRMALEGTEKGKR 554 (810)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHH--------HHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH--------HHHHHHHCCCHHHHHHHHccCCHHHHH
Confidence 01111 134468888899999999999999999985421 111112223346666666554333
Q ss_pred --HHHHHHHHhCCChHHHHHh-hcccccchhhhccccChhH---HHHHHHHHHHcCC--C-chhHHhh-hHHHHHHHHhc
Q 000149 346 --VREFAEAAFGVETEELVKK-MIPAVLPKLVVSQQDNDQA---VNIINELAKCLNT--D-MVPLIVT-WIPKVLAFALH 415 (2037)
Q Consensus 346 --~~~~~e~ll~~~~~~fL~~-~~~~~LP~LVl~~~~~~~~---~~~i~~ia~~~~~--~-~~~l~~~-~~~~Ila~ll~ 415 (2037)
+..++....+-+.+..... ...-++|.||---..+... ...+..|...... . ...++.. -++.+..++.+
T Consensus 555 ~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s 634 (810)
T 3now_A 555 HATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME 634 (810)
T ss_dssp HHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 3333331112222221110 1112778887643322111 1233444443332 2 3333433 46677766665
Q ss_pred ccc--HHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCC-hhhhh
Q 000149 416 QAD--ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNED-LPGFL 492 (2037)
Q Consensus 416 ~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fl 492 (2037)
... ......+|.-+.... +.+..+.. -...+.-|+.+++..+.+. + +.| .-++ +.+..+++. ....+
T Consensus 635 ~~~~Vq~~A~~~L~NLa~~~--~~~~~~v~-~~g~l~~Lv~LL~s~d~~v-q-~~A--a~AL---anLt~~s~~~~~~ii 704 (810)
T 3now_A 635 DHLYLTRAAAQCLCNLVMSE--DVIKMFEG-NNDRVKFLALLCEDEDEET-A-TAC--AGAL---AIITSVSVKCCEKIL 704 (810)
T ss_dssp CCTTHHHHHHHHHHHHTTSH--HHHHHHHS-SSSHHHHHHHGGGCSSHHH-H-HHH--HHHH---HHHHHHCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCh--HHHHHHHh-ccCcHHHHHHHhcCCCHHH-H-HHH--HHHH---HHHhCCCHHHHHHHH
Confidence 432 344555555444321 22222321 0122333444566654322 1 111 1222 222221221 22233
Q ss_pred H-HHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHH
Q 000149 493 R-NHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIE 528 (2037)
Q Consensus 493 ~-~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~ 528 (2037)
. ...+..+-. ++.+.+...|++++.++..|..
T Consensus 705 ~~~g~I~~Lv~----LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 705 AIASWLDILHT----LIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp TSTTHHHHHHH----HHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHH----HHCCCCHHHHHHHHHHHHHHHh
Confidence 3 233333332 3455678888999999888866
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=83.91 E-value=2.3 Score=41.74 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=44.5
Q ss_pred HHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhc
Q 000149 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLIS 1176 (2037)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~ 1176 (2037)
.+...|+|++|..+|+++++..|++......+-.|+..+|+++......+....
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 28 TYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456789999999999999999999888888888899999999887766655433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.40 E-value=98 Score=38.43 Aligned_cols=114 Identities=9% Similarity=0.033 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCccccccccc
Q 000149 1349 GNCWLQYAKLCRLAG---HYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2037)
Q Consensus 1349 ~~~WL~~AklARKag---~~~~A~~aLl~a~~~~~p~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~g~~~~ 1421 (2037)
...|...+.+..+.| .++.|...+.+|...+.+.+....+.++.. .++..+|+..++.+++..
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---------- 397 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---------- 397 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC----------
Confidence 356777777777766 677888888888888888888888888888 788889999888876420
Q ss_pred ccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhc---cchHHHHHHHHhh
Q 000149 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT--GQKQKEDVITLYSRVRELQ---PMWEKGYFYMAKY 1496 (2037)
Q Consensus 1422 ~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s--~~~~~~~i~~~Y~~A~~l~---~~weK~~~~la~y 1496 (2037)
.+.++..+|.....- ...+.+++...|++|.+.. |....+++.+|..
T Consensus 398 ----------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 398 ----------------------------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred ----------------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 034566677665541 1456899999999999999 4588889989887
Q ss_pred hHHH
Q 000149 1497 CDDV 1500 (2037)
Q Consensus 1497 ~d~l 1500 (2037)
+.+.
T Consensus 450 ~~~~ 453 (490)
T 2xm6_A 450 TAKQ 453 (490)
T ss_dssp CHHH
T ss_pred CHhH
Confidence 6544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=82.84 E-value=2.6 Score=51.62 Aligned_cols=88 Identities=19% Similarity=0.188 Sum_probs=58.6
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHc----------------cCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQ----------------MEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK 1183 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq----------------~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~ 1183 (2037)
....+.+.|+|++|..+|+++++ ..|.+......+-.|+..+|+|+..+.+.+..+...|+...
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 308 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 308 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH
Confidence 34556678888888888888887 44555555666777888888888777777766655554433
Q ss_pred hHhHHHHHHHHhcCChhhHHHHhhc
Q 000149 1184 TWCMQGVQAAWRLGRWDLMDEYLSG 1208 (2037)
Q Consensus 1184 ~l~~~~~EAAWrlg~Wd~lee~l~~ 1208 (2037)
-+. ....+...+|+++.-.+++..
T Consensus 309 a~~-~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 309 ALY-RRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp HHH-HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHHccCHHHHHHHHHH
Confidence 332 334566777888776665544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=82.79 E-value=5.5 Score=54.17 Aligned_cols=202 Identities=10% Similarity=0.140 Sum_probs=120.9
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000149 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2037)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2037)
.+.|--.|.|+...++..|+++|-.+.+-+|-. ..+-..|..+..+.+++|++..+.+||++. +|.-..+...
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--~ai~~LL~~~~e~~~e~vrR~aalgLGll~--~g~~e~~~~l--- 546 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--EAIHDMFTYSQETQHGNITRGLAVGLALIN--YGRQELADDL--- 546 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCGGGGHHH---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhhh--CCChHHHHHH---
Confidence 344444556666677878888887776655533 333344444445667889999999999883 3433111100
Q ss_pred ccccccccccccccccHHh-hhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccch
Q 000149 86 ACKLLLNVEDDILSQTVDY-LLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEV 164 (2037)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 164 (2037)
.+++..+. +..+.+ ..--.-|+.|+.+-+.+ ++. ++..+.+..++.|
T Consensus 547 -i~~L~~~~----dp~vRygaa~alglAyaGTGn~~a--------------------------Iq~-LL~~~~~d~~d~V 594 (963)
T 4ady_A 547 -ITKMLASD----ESLLRYGGAFTIALAYAGTGNNSA--------------------------VKR-LLHVAVSDSNDDV 594 (963)
T ss_dssp -HHHHHHCS----CHHHHHHHHHHHHHHTTTSCCHHH--------------------------HHH-HHHHHHHCSCHHH
T ss_pred -HHHHHhCC----CHHHHHHHHHHHHHHhcCCCCHHH--------------------------HHH-HHHHhccCCcHHH
Confidence 01111101 011111 11122467777763222 555 4445556677889
Q ss_pred hHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHH
Q 000149 165 QLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDV 244 (2037)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (2037)
+-+.+.+|.-|+.-.. +. -.+.++.|+.+.+..||.+++-++..+ .++ ......++.
T Consensus 595 RraAViaLGlI~~g~~-e~-------v~rlv~~L~~~~d~~VR~gAalALGli----------~aG-----n~~~~aid~ 651 (963)
T 4ady_A 595 RRAAVIALGFVLLRDY-TT-------VPRIVQLLSKSHNAHVRCGTAFALGIA----------CAG-----KGLQSAIDV 651 (963)
T ss_dssp HHHHHHHHHHHTSSSC-SS-------HHHHTTTGGGCSCHHHHHHHHHHHHHH----------TSS-----SCCHHHHHH
T ss_pred HHHHHHHHHhhccCCH-HH-------HHHHHHHHHhcCCHHHHHHHHHHHHHh----------ccC-----CCcHHHHHH
Confidence 9999999998875543 21 234566677899999999999888762 111 123556666
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHh
Q 000149 245 IKLAFTAADDPLILETLLESTAELMM 270 (2037)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~ 270 (2037)
+.. ++.-.|+.|....++++|.|+.
T Consensus 652 L~~-L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 652 LDP-LTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHH-HHTCSSHHHHHHHHHHHHHHST
T ss_pred HHH-HccCCCHHHHHHHHHHHHHHhc
Confidence 666 4555677799999999999964
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=82.30 E-value=10 Score=44.92 Aligned_cols=139 Identities=10% Similarity=0.045 Sum_probs=90.5
Q ss_pred cchhHHHHHHHHHHHccCC-chhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhh-hh-hhccccccccchhh
Q 000149 162 EEVQLSCVRVIRRILVHGT-RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTV-LS-SLFLDENASSRSNE 238 (2037)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~-~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 238 (2037)
.+-+......|..++.... .+...+ .+-|-.++..+|.+++..||..++.+|..+.++.- .. .+..
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~-~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~---------- 122 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQ-LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG---------- 122 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHH-cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH----------
Confidence 3456667788888776432 111222 24454566646699999999999999999763321 11 1111
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHHhCCCCcchHHHHHHHHHHHHhh
Q 000149 239 LKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2037)
Q Consensus 239 ~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~~~~~a~~~i~~la~~ 311 (2037)
...+..+-+.+....++.+++..+-+++.|.+....+.+.|.- .+-.|+..|.++++.++..|..-|-++|..
T Consensus 123 ~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 123 LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 1244455555555557889999999999986533222333322 445678888899999999999999999776
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=82.29 E-value=15 Score=39.86 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=37.6
Q ss_pred CChhhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000149 143 SDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2037)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2037)
...+...+.+.++|-+ .+.+|+...+..|.++-.. .. +.-|-.++.|++..||.++...+..+
T Consensus 10 ~~~~~~~~~~i~~L~~-~~~~vr~~A~~~L~~~~~~---~~--------~~~L~~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQD-DSYYVRRAAAYALGKIGDE---RA--------VEPLIKALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp CCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCG---GG--------HHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHhcC-CCHHHHHHHHHHHHhcCCh---hH--------HHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 3445566767777654 4567888877777765321 10 11122233777788888877777664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=82.28 E-value=12 Score=43.87 Aligned_cols=107 Identities=14% Similarity=0.052 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~~----~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~ 1418 (2037)
..+.+|...+.+.++.|+++.|...+.+|... +.+ .+...-+.++.. |+.++|+..+++++.-.+.
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~----- 147 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFEN----- 147 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh-----
Confidence 34567788888899999999998888877543 333 234456777777 9999999999998762110
Q ss_pred cccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000149 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2037)
Q Consensus 1419 ~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w 1486 (2037)
.......+.++..+|..+...|+ .++++..|.+++++.+..
T Consensus 148 -------------------------~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 148 -------------------------EERLRQAAELIGKASRLLVRQQK--FDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHT
T ss_pred -------------------------CCChhHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHc
Confidence 00122457788888988877776 899999999999987643
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=82.21 E-value=1.1e+02 Score=38.15 Aligned_cols=107 Identities=11% Similarity=0.075 Sum_probs=68.6
Q ss_pred HHhhcccHHHHHHHHHHHhHhhhhhh-hhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000149 197 FLLLNKRKAIRDAFCTQIGYFLQDTV-LSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2037)
Q Consensus 197 ~~~~~~~r~vR~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2037)
.+|.+++..+|..+...+..+-.+.- -..++ .....+..+-+.+...+|+.+++....+++.+.......
T Consensus 24 ~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~---------~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 24 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM---------RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHH---------TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCccHHHHH---------hCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 34577888888888888877541110 00000 012345556666666678889999999888874322111
Q ss_pred chhHH-HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 276 SQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 276 ~e~~~-~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
..+.. -++-.|++.|.++++-++..|..-|.++|...
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 132 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 11111 13446899999999999999999999998764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=82.08 E-value=12 Score=39.91 Aligned_cols=86 Identities=9% Similarity=0.011 Sum_probs=48.0
Q ss_pred HHHHhhcCHHHHHHHHHHHHcc---CCCc----hhhhhhHHHHHHhccChHHHHHHhhhhhccc-----hhhhhhHhHHH
Q 000149 1122 LSNKKSGNWAEVFTSCEQALQM---EPTS----VQRHSDVLNCLLNMCHLQAMVTHVDGLISRI-----PQYKKTWCMQG 1189 (2037)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~---~p~~----~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~-----p~~~~~l~~~~ 1189 (2037)
..+...|++++|..+|+++++. .+++ ......+-.++..+|+++....+.+...... +..........
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 4466778888888888887764 3322 1223344556677788876665554332111 11111112234
Q ss_pred HHHHHhcCChhhHHHHhh
Q 000149 1190 VQAAWRLGRWDLMDEYLS 1207 (2037)
Q Consensus 1190 ~EAAWrlg~Wd~lee~l~ 1207 (2037)
..+.+..|+|+.-.+++.
T Consensus 154 a~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHH
Confidence 566778888887766544
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.03 E-value=1.9e+02 Score=40.82 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=32.2
Q ss_pred CCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHh
Q 000149 291 DNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR 338 (2037)
Q Consensus 291 ~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 338 (2037)
.+.++.+|-.|...+.+..++++.. +-..-+..+++.+..++...
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~---l~~e~k~~Ir~~ll~~l~~~ 101 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNG---MSRLEKVYLKNSVMELIANG 101 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGG---SCHHHHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999988887763 33344555777777776654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=81.76 E-value=10 Score=45.29 Aligned_cols=137 Identities=8% Similarity=-0.011 Sum_probs=94.2
Q ss_pred HHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHh-c-c---CChhH---HHHHHHhhcCH
Q 000149 1059 SLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH-K-S---LSLQD---ELLSNKKSGNW 1130 (2037)
Q Consensus 1059 AL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r-~-~---~~l~~---qil~~E~~G~W 1130 (2037)
|+-++|..+..... ....+..|..||...+++|.+......- . . .+++- .+..+-+.|+-
T Consensus 85 a~~~l~~l~~~~~~------------~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~ 152 (310)
T 3mv2_B 85 NIEELENLLKDKQN------------SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV 152 (310)
T ss_dssp CCHHHHHTTTTSCC------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCCC------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH
Confidence 77888887643210 1233468999999999999998887633 1 1 12222 33457899999
Q ss_pred HHHHHHHHHHHccCC------Cchhhh--hhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhhH
Q 000149 1131 AEVFTSCEQALQMEP------TSVQRH--SDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2037)
Q Consensus 1131 ~~A~~~YE~~Lq~~p------~~~~~~--~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~l 1202 (2037)
+.|...++...+..| +.+-.+ .+|+....+-++++......+.+....|+|..... -+.+.+++|+|+..
T Consensus 153 d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l--Lln~~~~~g~~~eA 230 (310)
T 3mv2_B 153 STASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG--LLNLHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH--HHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH--HHHHHHHcCCHHHH
Confidence 999999998878777 333333 25666666666888888777888777776443222 22389999999999
Q ss_pred HHHhhcc
Q 000149 1203 DEYLSGA 1209 (2037)
Q Consensus 1203 ee~l~~~ 1209 (2037)
++.+...
T Consensus 231 e~~L~~l 237 (310)
T 3mv2_B 231 QGIVELL 237 (310)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=81.41 E-value=7.8 Score=36.50 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHH-HHHHHHHHHHH
Q 000149 1385 MEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAK-TLLLYSRWIHY 1463 (2037)
Q Consensus 1385 iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak-~~Ll~akwl~~ 1463 (2037)
++.|..+...|+..+|+..++.+++..| . .+. ++..+|..+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p-------------------~-----------------~~~~~~~~lg~~~~~ 47 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP-------------------V-----------------GKDEAYYLMGNAYRK 47 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-------------------S-----------------THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-------------------C-----------------cHHHHHHHHHHHHHH
Confidence 5678899999999999999999876321 0 033 66777777666
Q ss_pred hCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000149 1464 TGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2037)
Q Consensus 1464 s~~~~~~~i~~~Y~~A~~l~~~weK~~~~ 1492 (2037)
.|+ .+++++.|.++++++|....+|+.
T Consensus 48 ~~~--~~~A~~~~~~al~~~p~~~~~~~~ 74 (99)
T 2kc7_A 48 LGD--WQKALNNYQSAIELNPDSPALQAR 74 (99)
T ss_dssp HTC--HHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred cCC--HHHHHHHHHHHHhcCCCcHHHHHH
Confidence 665 788999999999999998887743
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=81.41 E-value=6.8 Score=51.98 Aligned_cols=111 Identities=10% Similarity=0.156 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-C--CChHHHHHHHHHHHcCC-chHHHHHHHHHhhcCCccccccccccc
Q 000149 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS-G--APNVHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~aLl~a~~~-~--~p~~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
....|+.++++.|..|.++.|...+.+|.+. + .+.+.++.|.+-|..|. ..+|-...+.+++..+.
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~---------- 502 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT---------- 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT----------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC----------
Confidence 4567999999999999999999888888765 3 46788899999998765 79999999999874210
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc---hHHHHHHHHhh
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM---WEKGYFYMAKY 1496 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~---weK~~~~la~y 1496 (2037)
. ....+.++++....| ..+.+...|..|++..+. -...|-.|.+|
T Consensus 503 -----------------------~---~~~w~~y~~fe~~~~--~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 503 -----------------------D---GEYINKYLDFLIYVN--EESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp -----------------------C---HHHHHHHHHHHHHHT--CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred -----------------------c---hHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0 234566777666555 478889999999998873 44556556554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=80.58 E-value=12 Score=40.65 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=34.9
Q ss_pred HHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000149 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2037)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2037)
+.+.++|. ..+.+|+...+..|.++-.. + .+.-|..++.|++..||.++..++..+
T Consensus 48 ~~L~~~l~-~~~~~vr~~a~~~L~~~~~~---~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 48 EPLIKALK-DEDAWVRRAAADALGQIGDE---R--------AVEPLIKALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp HHHHHHTT-CSSHHHHHHHHHHHHHHCCG---G--------GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHhhCCH---H--------HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44556664 44667888888887776321 1 112233345888888888888887774
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2037 | ||||
| d1e7ua4 | 369 | d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (P | 2e-40 |
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2037 | |||
| d1e7ua4 | 369 | Phoshoinositide 3-kinase (PI3K), catalytic domain | 100.0 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.66 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.66 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.58 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.55 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.5 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.28 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.17 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.14 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.93 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.85 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.79 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.45 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.1 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 96.58 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.57 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.29 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.25 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 96.23 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 95.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 95.44 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.65 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 94.63 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 94.57 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 94.35 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 94.17 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 94.14 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 93.83 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 93.25 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 93.21 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 92.91 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 92.61 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 91.92 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 91.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 91.55 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 91.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 91.2 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 91.11 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 91.11 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 90.67 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 90.12 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 90.0 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 89.77 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 89.58 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 88.91 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 88.83 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 88.4 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 88.13 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 87.17 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 87.13 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 86.19 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 84.53 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 84.34 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 83.68 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 83.58 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 82.47 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 81.5 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.7e-05 Score=92.00 Aligned_cols=372 Identities=12% Similarity=0.092 Sum_probs=191.7
Q ss_pred HHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH--hccCC----hhH
Q 000149 1046 LARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQD 1119 (2037)
Q Consensus 1046 La~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~--r~~~~----l~~ 1119 (2037)
+|...++-|.|..|+.+++..+...+. ..+.+-.|..+|..+++.|........ ...|+ ...
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 72 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 688899999999999999998764321 124566778888888888877776542 22222 122
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCCh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~W 1199 (2037)
....|...|+|++|..+|+.+++..|................+.+..............+.... .........-..+.+
T Consensus 73 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 151 (388)
T d1w3ba_ 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC-VRSDLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH-HHHHHHHHHHTTSCH
T ss_pred HHHHhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccchh
Confidence 3455677888888888888887777776665555555555554443322222111111110000 001111122222333
Q ss_pred hhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHH-hh
Q 000149 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVK-LH 1278 (2037)
Q Consensus 1200 d~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~k-Lh 1278 (2037)
............. .+........+|. .....++.....+..+.+-. +.+. +..++-.+-. +.
T Consensus 152 ~~~~~~~~~~~~~------~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~al~-----~~p~----~~~~~~~l~~~~~ 214 (388)
T d1w3ba_ 152 EEAKACYLKAIET------QPNFAVAWSNLGC--VFNAQGEIWLAIHHFEKAVT-----LDPN----FLDAYINLGNVLK 214 (388)
T ss_dssp HHHHHHHHHHHHH------CTTCHHHHHHHHH--HHHTTTCHHHHHHHHHHHHH-----HCTT----CHHHHHHHHHHHH
T ss_pred hhhHHHHHHhhcc------CcchhHHHHhhcc--cccccCcHHHHHHHHHHHHH-----hCcc----cHHHHHHHhhhhh
Confidence 2222222111100 0011112222222 22233443333333322211 0111 1111111111 11
Q ss_pred hHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhhcCCCCCCchhHHHHHHHHHH
Q 000149 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2037)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v~~~~~l~~~~~~~WL~~Akl 1358 (2037)
...+.+++......... . ..........+...+. + ...+ .+-+-.+++++ . +++.....|...+.+
T Consensus 215 ~~~~~~~A~~~~~~~~~--~-~~~~~~~~~~l~~~~~-~----~~~~--~~A~~~~~~al-~---~~p~~~~~~~~l~~~ 280 (388)
T d1w3ba_ 215 EARIFDRAVAAYLRALS--L-SPNHAVVHGNLACVYY-E----QGLI--DLAIDTYRRAI-E---LQPHFPDAYCNLANA 280 (388)
T ss_dssp TTTCTTHHHHHHHHHHH--H-CTTCHHHHHHHHHHHH-H----TTCH--HHHHHHHHHHH-H---TCSSCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhHH--H-hhhHHHHHHHHHHHHH-H----CCCH--HHHHHHHHHHH-H---hCCCCHHHHHHHHHH
Confidence 11122222222110000 0 0000000011111111 0 1111 11122222321 1 122346789999999
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000149 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2037)
Q Consensus 1359 ARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~ 1436 (2037)
..+.|+++.|...+..+....+ +......+.++...|+.++|+..++++++..|
T Consensus 281 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------------------------ 336 (388)
T d1w3ba_ 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP------------------------ 336 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT------------------------
T ss_pred HHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC------------------------
Confidence 9999999999999888876643 34666788889999999999999998865211
Q ss_pred cccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000149 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2037)
Q Consensus 1437 ~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~ 1499 (2037)
..+.++..+|..+...|+ .+++++.|++|++++|+...+|+.+|.-|.+
T Consensus 337 ------------~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 337 ------------EFAAAHSNLASVLQQQGK--LQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp ------------TCHHHHHHHHHHHHTTTC--CHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred ------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 114567778888777765 6888999999999999999999999987653
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=9.4e-05 Score=95.70 Aligned_cols=580 Identities=12% Similarity=0.091 Sum_probs=282.7
Q ss_pred hhcccCccchhHHHHHHHHHHHccCCchhhhh-hhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh----------hhh
Q 000149 155 FLYDESSEEVQLSCVRVIRRILVHGTRDVLLK-TRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD----------TVL 223 (2037)
Q Consensus 155 ~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~-~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~----------~~~ 223 (2037)
+.-+..+.+|+.+++..+..++.+...+.... .+..+.+.+...+.+++..+|.+++..+..+++. .++
T Consensus 188 ~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l 267 (861)
T d2bpta1 188 AQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL 267 (861)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTH
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457778888888888888887766442211 2233445555566888888888888777666421 111
Q ss_pred hh----hccccccccchhhHHHH------------------------------------HHHHHHhhhc------CChhH
Q 000149 224 SS----LFLDENASSRSNELKLL------------------------------------DVIKLAFTAA------DDPLI 257 (2037)
Q Consensus 224 ~~----~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~------~d~~i 257 (2037)
.. ...+.+...+..-..|+ ..+...+... ++..+
T Consensus 268 ~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~ 347 (861)
T d2bpta1 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNV 347 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH
Confidence 11 11111111111001111 1111111111 22234
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHH
Q 000149 258 LETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSV 337 (2037)
Q Consensus 258 ~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 337 (2037)
......++..++... +++++...+-.+-..+.+.+...|-.|...+-.++....+. ...+. .+.+.+.+..
T Consensus 348 ~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~----~~~~~---l~~~l~~l~~ 418 (861)
T d2bpta1 348 SMSAGACLQLFAQNC--GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV----QRTYY---VHQALPSILN 418 (861)
T ss_dssp HHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH----HHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc--chhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchh----hHHHH---HHHHHHHHHH
Confidence 444555555553333 66777777777778888999999999988888875443221 01111 1455566666
Q ss_pred hhcCchHHHHHHHHHHhCCChHHHHHhhc---------ccccchhhhccccChh----HHHHHHHHHHHcCCCchhHHhh
Q 000149 338 RLASRPIMVREFAEAAFGVETEELVKKMI---------PAVLPKLVVSQQDNDQ----AVNIINELAKCLNTDMVPLIVT 404 (2037)
Q Consensus 338 ~l~~~p~~~~~~~e~ll~~~~~~fL~~~~---------~~~LP~LVl~~~~~~~----~~~~i~~ia~~~~~~~~~l~~~ 404 (2037)
.+...-..++..|...+| .+..... +.+++.|+.....+.. +...+..++..........+..
T Consensus 419 ~l~d~~~~vr~~a~~~l~----~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 494 (861)
T d2bpta1 419 LMNDQSLQVKETTAWCIG----RIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYN 494 (861)
T ss_dssp GGGCSCHHHHHHHHHHHH----HHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGG
T ss_pred HhcCcchhhhhHHHHHHH----HHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhH
Confidence 665332334443332222 2222221 1123333322222211 1123344444444444333444
Q ss_pred hHHHHHHHHhc----ccc----HHHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHH---hhh----hc
Q 000149 405 WIPKVLAFALH----QAD----ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEI---NER----LN 469 (2037)
Q Consensus 405 ~~~~Ila~ll~----~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~---~~~----~~ 469 (2037)
.+..++..++. ... ...+.+++..+...........+....+.+...|...+........ ... ..
T Consensus 495 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 574 (861)
T d2bpta1 495 FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS 574 (861)
T ss_dssp GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 44444444442 111 1233455554444444444444444444444333322222211100 000 00
Q ss_pred chhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHh
Q 000149 470 RVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAI 549 (2037)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL 549 (2037)
.+...++.+.+. .++....|+. -++..+-..+...++...+..++.+++.+++.+|.....+.++|+-.|..++
T Consensus 575 ~~~~~l~~~~~~--~~~~~~~~~~----~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l 648 (861)
T d2bpta1 575 NILTVLAAVIRK--SPSSVEPVAD----MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL 648 (861)
T ss_dssp HHHHHHHHHHHH--CGGGTGGGHH----HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--chhhHHHHHH----HHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHh
Confidence 111122221111 1222333332 2222222222233334456789999999999999999999999999999988
Q ss_pred c--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhccc
Q 000149 550 N--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHE 627 (2037)
Q Consensus 550 ~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~ 627 (2037)
+ .+..+..++.++..+++.+. +++.+.+..++..++..+...... ...+..+...|..++..-+..+.
T Consensus 649 ~~~~~~v~~~a~~~l~~i~~~~~----~~~~~~~~~i~~~L~~~l~~~~~~-~~~k~~~~~~l~~i~~~~~~~~~----- 718 (861)
T d2bpta1 649 NQVDSPVSITAVGFIADISNSLE----EDFRRYSDAMMNVLAQMISNPNAR-RELKPAVLSVFGDIASNIGADFI----- 718 (861)
T ss_dssp HCTTSHHHHHHHHHHHHHHHHTG----GGGHHHHHHHHHHHHHHHHCTTCC-TTHHHHHHHHHHHHHHHHGGGGH-----
T ss_pred CCCCHHHHHHHHHHHHHHHHHhH----HHhHhhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 6 44577888888888888764 478899999999998888533221 22355667777766655332222
Q ss_pred CCCCCCchhhHHHHHHHHHh-cCCC-CHHHHHHHHHhhccCCChhHHHHHHHHHHHHHh---hcHHHHHHHHhccCCCCc
Q 000149 628 FPLLPSIAALTEVNKAIQEA-RGPM-TLKDQLLAAVDGLNHENLNVRYMVVCELSKLLK---LKSEDVTALINGEACSDL 702 (2037)
Q Consensus 628 lp~Lp~ip~L~~v~~~l~~~-r~~~-~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~---~~~~~l~~~~~~e~~~~~ 702 (2037)
|.+|.+ -..+... .... +.......+.. .||..++..+...+. .+.+.+.
T Consensus 719 ----~~l~~~---~~~l~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~i~~~~~~~~~~~~----------- 773 (861)
T d2bpta1 719 ----PYLNDI---MALCVAAQNTKPENGTLEALDYQI-------KVLEAVLDAYVGIVAGLHDKPEALF----------- 773 (861)
T ss_dssp ----HHHHHH---HHHHHHHHTCCCSSSSHHHHHHHH-------HHHHHHHHHHHHHHHHTTTCHHHHG-----------
T ss_pred ----HHHHHH---HHHHHHHhCcCCCcccHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCHHHHH-----------
Confidence 223332 2222221 1111 11111112222 233333333333332 2221111
Q ss_pred hhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccccccccccChhhHHHHHHHHHHHHHHcC-C
Q 000149 703 DVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAA-P 781 (2037)
Q Consensus 703 ~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~~~~~~~~~~F~~~ll~~~Lv~af~s~-~ 781 (2037)
|.+..++.-+...+.+... ..++++...|..|||-+...=|+. .. ...-..+|+..++ -+++.+. .
T Consensus 774 p~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~-~~-------~~~~~~~~~~~~l----~~~~~~~~~ 840 (861)
T d2bpta1 774 PYVGTIFQFIAQVAEDPQL-YSEDATSRAAVGLIGDIAAMFPDG-SI-------KQFYGQDWVIDYI----KRTRSGQLF 840 (861)
T ss_dssp GGHHHHHHHHHHHHHCHHH-HTSHHHHHHHHHHHHHHHHHCTTS-TT-------GGGTTCHHHHHHH----HHHHHCSSS
T ss_pred HHHHHHHHHHHHHHhCCcc-CCCHHHHHHHHHHHHHHHHHCcch-hH-------HHHHhhHHHHHHH----HHHHhCcch
Confidence 3445444443333333221 123578888888888554211110 00 0112235555544 3455554 4
Q ss_pred ChhhHhHHHHHHHHHHHHcC
Q 000149 782 DTIIQDSAALAIQELLKIAG 801 (2037)
Q Consensus 782 dt~~Q~~~AyaiQelL~~~g 801 (2037)
+.+.++-+.||+.++-+..|
T Consensus 841 ~~~~~~~~~~~~~~~~~~~~ 860 (861)
T d2bpta1 841 SQATKDTARWAREQQKRQLS 860 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhC
Confidence 67788888999999888654
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=6.2e-06 Score=112.72 Aligned_cols=634 Identities=13% Similarity=0.111 Sum_probs=329.6
Q ss_pred hhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccc
Q 000149 10 DLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKL 89 (2037)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (2037)
=-+|.|.+.+||+.|+-.++.++-.-+...+..+.+.|-....++.++++..-...|+-+....+......
T Consensus 51 l~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~--------- 121 (1207)
T d1u6gc_ 51 LKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS--------- 121 (1207)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----C---------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccc---------
Confidence 34889999999999999999999887777777787777666666566666544444433322222110000
Q ss_pred ccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhHHHH
Q 000149 90 LLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCV 169 (2037)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~ 169 (2037)
.+..+ + ...+-..+...+.......|+..++
T Consensus 122 ---------------------------~~~~~------~----------------~~~l~~~l~~~~~~~~~~~v~~~al 152 (1207)
T d1u6gc_ 122 ---------------------------ALAAN------V----------------CKKITGRLTSAIAKQEDVSVQLEAL 152 (1207)
T ss_dssp ---------------------------CTHHH------H----------------HHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred ---------------------------hhHHH------H----------------HHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 00000 0 0112222333344455567888899
Q ss_pred HHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHh
Q 000149 170 RVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAF 249 (2037)
Q Consensus 170 ~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (2037)
.+|..++.+....+ .....+.++.+.-.+.|++..||.+++..++.++. .++ ..--..++..+-+.+
T Consensus 153 ~~l~~l~~~~g~~l-~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~------~~~------~~~~~~~~~~ll~~l 219 (1207)
T d1u6gc_ 153 DIMADMLSRQGGLL-VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM------SCG------NIVFVDLIEHLLSEL 219 (1207)
T ss_dssp HHHHHHHHHTCSSC-TTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT------TC----------CTTHHHHHHHHH
T ss_pred HHHHHHHHHhhHhh-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH------HCC------HHHHHHHHHHHHHHH
Confidence 99999888766332 22223344544445699999999999999988651 111 111123555555556
Q ss_pred hhcCChhHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhh
Q 000149 250 TAADDPLILETLLESTAELMMAVDVH-SQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLIC 328 (2037)
Q Consensus 250 ~~~~d~~i~eTll~~~~~i~~~~~~~-~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~ 328 (2037)
....+..+..+.+.++|.+++..... +..+.-++-.++..++..+.-+|-.|..-+..++..+.+. +.++.
T Consensus 220 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~----~~~~~---- 291 (1207)
T d1u6gc_ 220 SKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE----VYPHV---- 291 (1207)
T ss_dssp HHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC----CHHHH----
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhh----hhhhH----
Confidence 66666667778888888886544211 1122234556788899999999999999888887776442 22333
Q ss_pred hhhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhcccc-C----hhHHHHHHHHHHHcCCCchhHHh
Q 000149 329 NELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQD-N----DQAVNIINELAKCLNTDMVPLIV 403 (2037)
Q Consensus 329 ~~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~LVl~~~~-~----~~~~~~i~~ia~~~~~~~~~l~~ 403 (2037)
+++...+.+-+...|......++...+... ...........+........ . ..+.+.|..++...+....+.+.
T Consensus 292 ~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~ 370 (1207)
T d1u6gc_ 292 STIINICLKYLTYDPNYNYDDEDEDENAMD-ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK 370 (1207)
T ss_dssp HHHHHHHTTCCCCC-------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHhhhh-hhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 355566666666666554433321111111 11111111122222111000 0 01345566655544433333332
Q ss_pred hhHHHHHHHHhcccc--HHHHHHHHHHHHhhc---------------CCChHHHHHhhhHHHHHHHHHhhcCCCchHHhh
Q 000149 404 TWIPKVLAFALHQAD--ERRLLSALEFYCIQT---------------GSDNQEIFAAALPALLDELICFVDGGDSDEINE 466 (2037)
Q Consensus 404 ~~~~~Ila~ll~~~~--~~~~~~~l~~~~~~~---------------~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~ 466 (2037)
.-++.++..+-.... ...+..++.-+...+ .......+...+|.++..+...+....... +.
T Consensus 371 ~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~-r~ 449 (1207)
T d1u6gc_ 371 TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT-RQ 449 (1207)
T ss_dssp TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHH-HH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhH-HH
Confidence 333333322211111 223444443333222 223334455556666655554444433221 11
Q ss_pred hhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcc-ccccchHHHHHHH
Q 000149 467 RLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGS-HLTTYVPKILVLL 545 (2037)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~L 545 (2037)
.....+..+.... +..+.+|+..-+-+++..+++. ..+...|..++..++.+++..++ .+.++.+.++..+
T Consensus 450 ---~~~~~l~~l~~~~--~~~l~~~l~~~~~~i~~~l~~~---~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~ 521 (1207)
T d1u6gc_ 450 ---CCFNMLTELVNVL--PGALTQHIPVLVPGIIFSLNDK---SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV 521 (1207)
T ss_dssp ---HHHHHHHHHHHHS--TTTTGGGHHHHHHHHHHHTTCS---SSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHH
T ss_pred ---HHHHHHHHHHHHc--chHHHHhhHhhHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhH
Confidence 1223344444332 3456677766666666666432 23455677888889988887766 3556667777777
Q ss_pred HHHhcCC--CcchhhhHHHHHHHHHhccCC---CcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHH
Q 000149 546 MHAINKE--SLQCEGLSVLHFFIEQLSRVS---PSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAI 620 (2037)
Q Consensus 546 ~saL~~~--~L~~~~l~~W~~fv~~L~~~~---~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~ 620 (2037)
..++..+ ..+..++.++..++..+.... ..+..+.+..++..+++.+..... ....+..+...+..++....+.
T Consensus 522 ~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~-~~e~~~~al~~l~~l~~~~~~~ 600 (1207)
T d1u6gc_ 522 VACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADI-DQEVKERAISCMGQIICNLGDN 600 (1207)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSS-CHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHhhhh
Confidence 7777543 356677888888888765321 235567888888888887754432 2234666777777776654332
Q ss_pred HHhhcccC-CC----C-CCchhhHHHHHHHHHhc--CCCC----HHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHH
Q 000149 621 LKQHIHEF-PL----L-PSIAALTEVNKAIQEAR--GPMT----LKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSE 688 (2037)
Q Consensus 621 L~~~i~~l-p~----L-p~ip~L~~v~~~l~~~r--~~~~----l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~ 688 (2037)
+..++..+ +. + .+......+.....-.. ...+ +.+.+..+...+..++..+|..++.-|..++....+
T Consensus 601 ~~~~~~~~l~~l~~~l~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~ 680 (1207)
T d1u6gc_ 601 LGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSD 680 (1207)
T ss_dssp CCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccc
Confidence 22111110 00 0 00001111111111111 1122 234456667777888888888888888776654321
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCccccc
Q 000149 689 DVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVK 748 (2037)
Q Consensus 689 ~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~ 748 (2037)
. .....+..++..|.....+ .+..++..+..+|+.+...-|+.+.
T Consensus 681 ~----------~~~~~~~~~l~~l~~ll~~-----~d~~v~~~~l~~l~~l~~~~~~~~~ 725 (1207)
T d1u6gc_ 681 S----------LTAAMIDAVLDELPPLISE-----SDMHVSQMAISFLTTLAKVYPSSLS 725 (1207)
T ss_dssp T----------CCHHHHHHHHTTCGGGSCT-----TCHHHHHHHHHHHHHHTTSCGGGGG
T ss_pred c----------chhHHHhhHHHhhcccccc-----ccHHHHHHHHHHHHHHHhhcchhhh
Confidence 1 1112344444444333332 2357888899999999877776554
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=0.00074 Score=84.36 Aligned_cols=555 Identities=15% Similarity=0.151 Sum_probs=281.8
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccc-hHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccccc
Q 000149 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGV-LTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDK 84 (2037)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (2037)
.+++--+|+|+...+|..|+-.++.+..--||.- ...+.+-|..+.+++ +.|+..++..||-+.=..|..
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~-~ev~~~~~~~l~~~~~~~~~~-------- 82 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVLLALAEQLGTFTTLVGGP-------- 82 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCC-HHHHHHHHHHHTTCSGGGTSG--------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHcCCh--------
Confidence 4566778999999999999999999999889853 234555555555553 457767666665321000100
Q ss_pred cccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccch
Q 000149 85 NACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEV 164 (2037)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 164 (2037)
..++ .+-+.+..++ ...+..|
T Consensus 83 --------------------------------~~~~--------------------------~ll~~l~~l~-~~~~~~V 103 (588)
T d1b3ua_ 83 --------------------------------EYVH--------------------------CLLPPLESLA-TVEETVV 103 (588)
T ss_dssp --------------------------------GGGG--------------------------GGHHHHHHHT-TSSCHHH
T ss_pred --------------------------------hHHH--------------------------HHHHHHHHHc-cCCCHHH
Confidence 0011 1334444443 4445678
Q ss_pred hHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHH
Q 000149 165 QLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDV 244 (2037)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (2037)
+-+.+.+|..|..+.+.+..... +.-.+..|..++....|.+++.-++.+. . ..+......++..
T Consensus 104 r~~a~~~l~~i~~~~~~~~~~~~---l~p~i~~L~~~~~~~~r~~a~~ll~~~~---------~---~~~~~~~~~l~~~ 168 (588)
T d1b3ua_ 104 RDKAVESLRAISHEHSPSDLEAH---FVPLVKRLAGGDWFTSRTSACGLFSVCY---------P---RVSSAVKAELRQY 168 (588)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHT---HHHHHHHHHTCSSHHHHHHHGGGHHHHT---------T---TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHH---HHHHHHHHhcccchHHHHHHHHHHHHHH---------H---HhhHHHHHHHHHH
Confidence 88888999988888775543222 3334555666666778888877776644 1 1111222333333
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHH-HHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccch
Q 000149 245 IKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLIL-LVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSK 323 (2037)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~-Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~ 323 (2037)
+.+ +..-++|.|.++...+++.+.+ ..+.+.....++- |.+.+..++..||..|..-+..++....... .
T Consensus 169 ~~~-l~~D~~~~VR~~a~~~l~~~~~--~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~------~ 239 (588)
T d1b3ua_ 169 FRN-LCSDDTPMVRRAAASKLGEFAK--VLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED------L 239 (588)
T ss_dssp HHH-HHTCSCHHHHHHHHHHHHHHHH--TSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH------H
T ss_pred HHH-HhccCCHHHHHHHHHHHHHHHH--HhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH------H
Confidence 333 4555678899999999988844 3355544333333 4455677788889888888888865432210 0
Q ss_pred hhhhhhhhhHHHHHhhcCchH-HHHHHHHHHhCCChHHHHHhh-----cccccchhhhc-cccChh----HHHHHHHHHH
Q 000149 324 AVLICNELFDYLSVRLASRPI-MVREFAEAAFGVETEELVKKM-----IPAVLPKLVVS-QQDNDQ----AVNIINELAK 392 (2037)
Q Consensus 324 ~~~~~~~l~~~~~~~l~~~p~-~~~~~~e~ll~~~~~~fL~~~-----~~~~LP~LVl~-~~~~~~----~~~~i~~ia~ 392 (2037)
. ..+. ++.+++...|. .++..|-..| .++.... ...++|.++.. ...+.+ +...+..+++
T Consensus 240 ~----~~i~-~~l~~~~~D~~~~Vr~~~~~~l----~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~ 310 (588)
T d1b3ua_ 240 E----ALVM-PTLRQAAEDKSWRVRYMVADKF----TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp H----HHTH-HHHHHHHTCSSHHHHHHHHHTH----HHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred H----HHHH-HHHHHhcccccHHHHHHHHHhH----HHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 1 1222 23333443332 2232221111 1222111 12344544432 122222 2244444555
Q ss_pred HcCCCchh-HHhhhHHHHHHHHhccccH---HHHHHHHHHHHhhcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhh
Q 000149 393 CLNTDMVP-LIVTWIPKVLAFALHQADE---RRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERL 468 (2037)
Q Consensus 393 ~~~~~~~~-l~~~~~~~Ila~ll~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~ 468 (2037)
.+...... ...+.+...+..++..... ..+..++..+....+ ........+|.+.. .+.+.+.+... .
T Consensus 311 ~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~--~~~~~~~l~p~l~~----~l~d~~~~v~~-~- 382 (588)
T d1b3ua_ 311 NLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG--KDNTIEHLLPLFLA----QLKDECPEVRL-N- 382 (588)
T ss_dssp TSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--HHHHHHHTHHHHHH----HHTCSCHHHHH-H-
T ss_pred HHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccc--hhHHHHHHHHHHHH----HHHhhhhhhhh-H-
Confidence 44443221 1222222222222222111 222222222221111 12223334444442 23333332211 1
Q ss_pred cchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Q 000149 469 NRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHA 548 (2037)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~sa 548 (2037)
+..++..+.... + ...+.+.++..+..+ ....+...|..++..++.+.+.+|+.. +-+++...+...
T Consensus 383 --~~~~l~~~~~~~-~----~~~~~~~ll~~l~~~----~~d~~~~~r~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~ 449 (588)
T d1b3ua_ 383 --IISNLDCVNEVI-G----IRQLSQSLLPAIVEL----AEDAKWRVRLAIIEYMPLLAGQLGVEF--FDEKLNSLCMAW 449 (588)
T ss_dssp --HHTTCHHHHHHS-C----HHHHHHHHHHHHHHH----HTCSSHHHHHHHHHHHHHHHHHHCGGG--CCHHHHHHHHHG
T ss_pred --HHHHHHHHHhhc-c----hhhhhhHHHHHHHHH----HhcccHHHHHHHHHHHHHHHHHcChHh--HHHHHHHHHHhh
Confidence 111121222111 1 123334444443332 233455677888999999999888743 446777777777
Q ss_pred hcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcc
Q 000149 549 INK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIH 626 (2037)
Q Consensus 549 L~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~ 626 (2037)
+.. .+.|..++++...++..+.. + .....++..+..+.. +.....|..+...+..+...-....
T Consensus 450 l~D~~~~VR~~A~~~L~~l~~~~~~---~---~~~~~i~~~l~~~~~---~~~~~~R~~~~~~l~~l~~~~~~~~----- 515 (588)
T d1b3ua_ 450 LVDHVYAIREAATSNLKKLVEKFGK---E---WAHATIIPKVLAMSG---DPNYLHRMTTLFCINVLSEVCGQDI----- 515 (588)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHCH---H---HHHHHTHHHHHHTTT---CSCHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred ccCCchhHHHHHHHHHHHHHHHhCc---H---HHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHcChHH-----
Confidence 754 45677888888888877642 1 112333333333332 2222334445555554432211100
Q ss_pred cCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHH
Q 000149 627 EFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLS 706 (2037)
Q Consensus 627 ~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~ 706 (2037)
. ..+-+..+.+.+.+..+.||..+++-|..+.......... +.+.
T Consensus 516 -----------------~--------~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~----------~~i~ 560 (588)
T d1b3ua_ 516 -----------------T--------TKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ----------SEVK 560 (588)
T ss_dssp -----------------H--------HHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH----------HHHH
T ss_pred -----------------H--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHH----------HHHH
Confidence 0 0123455677788888999999999988776544322110 1233
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000149 707 TLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2037)
Q Consensus 707 ~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2037)
.++..|+ + + .+.+++..+.++|+.|
T Consensus 561 ~~l~~L~----~-D---~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 561 PILEKLT----Q-D---QDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHT----T-C---SSHHHHHHHHHHHHHT
T ss_pred HHHHHHc----C-C---CCHHHHHHHHHHHHHH
Confidence 4444442 2 1 3468999999998865
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=2.3e-05 Score=90.89 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
...|...+.+..+.|.++.|...+.+|.+.. .+.+....+.++...|+..+|+..++.++...+
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------- 302 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-------------- 302 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC--------------
Confidence 4556666777777777777777766665553 234555666777777777777777666544211
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARK 1506 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~ 1506 (2037)
..+.++..+|.-....| ..+++++.|++|++++|+...+|+.+|..|.+.
T Consensus 303 ----------------------~~~~~~~~l~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------ 352 (388)
T d1w3ba_ 303 ----------------------THADSLNNLANIKREQG--NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ------ 352 (388)
T ss_dssp ----------------------TCHHHHHHHHHHHHTTT--CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT------
T ss_pred ----------------------ccchhhhHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------
Confidence 01233444444444444 478888889999999998888888888765321
Q ss_pred hhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1507 RQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1507 ~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
|. ...|+..|-+++...+++
T Consensus 353 --------g~--------~~~A~~~~~~al~l~P~~ 372 (388)
T d1w3ba_ 353 --------GK--------LQEALMHYKEAIRISPTF 372 (388)
T ss_dssp --------TC--------CHHHHHHHHHHHTTCTTC
T ss_pred --------CC--------HHHHHHHHHHHHHhCCCC
Confidence 11 125888999999887765
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=0.002 Score=80.25 Aligned_cols=482 Identities=15% Similarity=0.154 Sum_probs=249.5
Q ss_pred hhHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhh
Q 000149 146 SFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSS 225 (2037)
Q Consensus 146 ~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~ 225 (2037)
.++-+.+.+++-+ ++||..++.+.|..+...-....- ....+.-++.++.+++..||++|+.++..+.+.
T Consensus 48 ~~lip~l~~~~~~--~~ev~~~~~~~l~~~~~~~~~~~~---~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~----- 117 (588)
T d1b3ua_ 48 SELLPFLTDTIYD--EDEVLLALAEQLGTFTTLVGGPEY---VHCLLPPLESLATVEETVVRDKAVESLRAISHE----- 117 (588)
T ss_dssp HTHHHHHHHTCCC--CHHHHHHHHHHHTTCSGGGTSGGG---GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh-----
Confidence 4466666676644 468998888988888765332111 122334456677999999999999999886511
Q ss_pred hccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 000149 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLI 305 (2037)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i 305 (2037)
.+.....+.+.-+-..+...+....+.+....++.+... ...+...-.+-.+..-+..+++.||-.|...|
T Consensus 118 -------~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~--~~~~~~~~l~~~~~~l~~D~~~~VR~~a~~~l 188 (588)
T d1b3ua_ 118 -------HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR--VSSAVKAELRQYFRNLCSDDTPMVRRAAASKL 188 (588)
T ss_dssp -------SCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTT--SCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 111112232333333455556666777766666666332 23444444444455667889999999999999
Q ss_pred HHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCchH-HHHHHHHH----Hh-CCChHHHHHhhcccccchhhhcc-c
Q 000149 306 RKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPI-MVREFAEA----AF-GVETEELVKKMIPAVLPKLVVSQ-Q 378 (2037)
Q Consensus 306 ~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~p~-~~~~~~e~----ll-~~~~~~fL~~~~~~~LP~LVl~~-~ 378 (2037)
..+|+..... . +...|.+.+. .+.+.+. .++..|-. +. ..+..+.. ..++|.+...- .
T Consensus 189 ~~~~~~~~~~--------~--~~~~l~~~l~-~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~----~~i~~~l~~~~~D 253 (588)
T d1b3ua_ 189 GEFAKVLELD--------N--VKSEIIPMFS-NLASDEQDSVRLLAVEACVNIAQLLPQEDLE----ALVMPTLRQAAED 253 (588)
T ss_dssp HHHHHTSCHH--------H--HHHTHHHHHH-HHHTCSCHHHHTTHHHHHHHHHHHSCHHHHH----HHTHHHHHHHHTC
T ss_pred HHHHHHhcHH--------H--HHHHHHHHHH-HHhcCCchhhHHHHHHHHHHhhccCCHHHHH----HHHHHHHHHhccc
Confidence 9998764221 1 1123333333 3333222 22222210 11 11222222 33455554321 1
Q ss_pred cChhH----HHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHH---HHHHHHHHHHhhcCCChH--HHHHhhhHHHH
Q 000149 379 DNDQA----VNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADER---RLLSALEFYCIQTGSDNQ--EIFAAALPALL 449 (2037)
Q Consensus 379 ~~~~~----~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~---~~~~~l~~~~~~~~~~~~--~~~~~~~~~~l 449 (2037)
.+..+ ...+..++...+.+ .....+..++..++...+++ ....++..+....+.+.. ..+...+|.+.
T Consensus 254 ~~~~Vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~ 330 (588)
T d1b3ua_ 254 KSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIK 330 (588)
T ss_dssp SSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHHhhhh---hhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 11111 12333343333221 12233444455555544433 344444433333333222 22333444433
Q ss_pred HHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHH
Q 000149 450 DELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEM 529 (2037)
Q Consensus 450 ~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l 529 (2037)
. ...+.+... +.. +...+..++..+ +.+...+.+.+.+... +..++...+..++.+++.+...
T Consensus 331 ~----~~~d~~~~v-r~~---~~~~l~~~~~~~-~~~~~~~~l~p~l~~~--------l~d~~~~v~~~~~~~l~~~~~~ 393 (588)
T d1b3ua_ 331 E----LVSDANQHV-KSA---LASVIMGLSPIL-GKDNTIEHLLPLFLAQ--------LKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp H----HHTCSCHHH-HHH---HHTTGGGGHHHH-CHHHHHHHTHHHHHHH--------HTCSCHHHHHHHHTTCHHHHHH
T ss_pred H----hhcCCChHH-HHH---HHHHHhhhhhcc-chhHHHHHHHHHHHHH--------HHhhhhhhhhHHHHHHHHHHhh
Confidence 2 223322221 111 111222222111 1111112222333222 2234566788889999988887
Q ss_pred hccccccchHHHHHHHHHHhcCC--CcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHH
Q 000149 530 IGSHLTTYVPKILVLLMHAINKE--SLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVV 607 (2037)
Q Consensus 530 ~g~~v~~~~pqI~a~L~saL~~~--~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~ 607 (2037)
+|. ....+.++-.+...++.+ ..|..++.++..+.+.+.. +.+.+.+... +..++. +.....+..|.
T Consensus 394 ~~~--~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~---~~~~~~l~~~---l~~~l~---D~~~~VR~~A~ 462 (588)
T d1b3ua_ 394 IGI--RQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV---EFFDEKLNSL---CMAWLV---DHVYAIREAAT 462 (588)
T ss_dssp SCH--HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG---GGCCHHHHHH---HHHGGG---CSSHHHHHHHH
T ss_pred cch--hhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCh---HhHHHHHHHH---HHhhcc---CCchhHHHHHH
Confidence 765 233466777777777644 5888999999999988743 3443333333 333333 23345677788
Q ss_pred HHHHHHHHHhHHHHHhhcccCCCCCCchhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcH
Q 000149 608 KILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKS 687 (2037)
Q Consensus 608 ~il~~Li~~n~~~L~~~i~~lp~Lp~ip~L~~v~~~l~~~r~~~~l~~~l~~~~~rl~~en~~Vr~~aL~eL~~~L~~~~ 687 (2037)
..+..|+...+..- ....-+..+.+...+.+..+|..++..+..+...-.
T Consensus 463 ~~L~~l~~~~~~~~------------------------------~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~ 512 (588)
T d1b3ua_ 463 SNLKKLVEKFGKEW------------------------------AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp HHHHHHHHHHCHHH------------------------------HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHH------------------------------HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC
Confidence 77777765432110 001123445566678888888888777766554322
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000149 688 EDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2037)
Q Consensus 688 ~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2037)
.+ .+...++..|+.++.+.. +.+|..++++||.||
T Consensus 513 ~~-------------~~~~~ilp~ll~~~~D~v-----~nVR~~a~~~l~~i~ 547 (588)
T d1b3ua_ 513 QD-------------ITTKHMLPTVLRMAGDPV-----ANVRFNVAKSLQKIG 547 (588)
T ss_dssp HH-------------HHHHHTHHHHHHGGGCSC-----HHHHHHHHHHHHHHG
T ss_pred hH-------------HHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHH
Confidence 11 123456777777776643 579999999999996
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=0.0038 Score=84.38 Aligned_cols=701 Identities=14% Similarity=0.155 Sum_probs=319.5
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHh-hhchhhhhhhhhhccchhhhhhhccCcccccccc-c
Q 000149 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLE-SLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDW-D 83 (2037)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (2037)
++.+--.|.|....||..|+..+-.++.+.+...+..++..+. .+.++....+++.....+|.+.=..|.. .++ -
T Consensus 174 l~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~l 250 (1207)
T d1u6gc_ 174 LTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR---IGEYL 250 (1207)
T ss_dssp HHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG---GTTSC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchh---hHHHH
Confidence 3344457788889999999999999988888776665555443 4555555666776667777665433422 111 0
Q ss_pred cccccc---ccccccccccccHHhhhhcccccccCCccccccccc----cccc-CCCcc---------cccccccCCChh
Q 000149 84 KNACKL---LLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELS----SKIV-NPSDV---------QSKDLNFHSDFS 146 (2037)
Q Consensus 84 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~----~~~~-~~~~~---------~~~~~~~~~~~~ 146 (2037)
.+-..+ +++.++.+........+..| +..|...+......- .+.+ .-|.. .........+..
T Consensus 251 ~~i~~~l~~~l~~~~~~~r~~al~~l~~l-~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~ 329 (1207)
T d1u6gc_ 251 EKIIPLVVKFCNVDDDELREYCIQAFESF-VRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD 329 (1207)
T ss_dssp TTHHHHHHHHHSSCCTTTHHHHHHHHHHH-HHCTTCCCHHHHHHHHHHHTTCCCCC------------------------
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHH-HHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhh
Confidence 111111 22223322222333344443 233433221100000 0000 00000 000000000000
Q ss_pred hHHHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh--h
Q 000149 147 FLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL--S 224 (2037)
Q Consensus 147 ~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~--~ 224 (2037)
......+. -.+..+..|+-+.+..|..++.+.... +..-..+....+-..+.+++..||.++..++..++...-- .
T Consensus 330 ~~~~~~~~-~~~d~s~~vR~~a~~~L~~l~~~~~~~-l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~ 407 (1207)
T d1u6gc_ 330 QGSDDEYS-DDDDMSWKVRRAAAKCLDAVVSTRHEM-LPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQS 407 (1207)
T ss_dssp -------------CTTHHHHHHHHHHHHHHTTCCTT-HHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHh-hhhhhhHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhh
Confidence 11110110 123667788999999999998876533 2222222223333345899999999999999888622110 0
Q ss_pred hhcc----ccccccchhh----HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHHhCCCCc
Q 000149 225 SLFL----DENASSRSNE----LKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH-SQHFLFLLILLVEQLDNPHV 295 (2037)
Q Consensus 225 ~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~-~e~~~~~l~~Li~~L~~~n~ 295 (2037)
.... ....+..... ..++..+...+. .+++.+++.++..+++++...... .+.+...+-.++..|+..+.
T Consensus 408 ~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~-~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~ 486 (1207)
T d1u6gc_ 408 WLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK-EKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS 486 (1207)
T ss_dssp ----------CCCHHHHHHHHTTHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSS
T ss_pred hhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccc
Confidence 0000 0000111111 224444444333 356778888888888875433211 23334444557788876654
Q ss_pred --chHHHHHHHHHHHHhhhhccCcccccchhhhhhhhhhHHHHHhhcCc-hHH-------HHHHHHHHhC-------CCh
Q 000149 296 --TVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASR-PIM-------VREFAEAAFG-------VET 358 (2037)
Q Consensus 296 --~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~~-p~~-------~~~~~e~ll~-------~~~ 358 (2037)
.++..|...+..+++.|....+ .++. ..+.+.+...+... +.. ..+++. .++ ...
T Consensus 487 ~~~~~~~al~~l~~l~~~~~~~~~---~~~~----~~l~~~~~~~~~~~~~~i~~~al~~~~~l~~-~l~~~~~~~~~~~ 558 (1207)
T d1u6gc_ 487 SSNLKIDALSCLYVILCNHSPQVF---HPHV----QALVPPVVACVGDPFYKITSEALLVTQQLVK-VIRPLDQPSSFDA 558 (1207)
T ss_dssp CHHHHHHHHHHHHHHHHSSCGGGG---HHHH----TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HHCCSSSCCCCCC
T ss_pred hhHHHHHHHHHHHHHHHhccHHHH---HHHH----HhhhhhHHHHHccccHHHHHHHHHHHHHHHH-Hhhhhccchhhhh
Confidence 4677888888888777755322 2222 24444444444332 222 122222 111 122
Q ss_pred HHHHHhhcccccchhhhccccChhH----HHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc---c-cHHHHHHHHHHHH
Q 000149 359 EELVKKMIPAVLPKLVVSQQDNDQA----VNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ---A-DERRLLSALEFYC 430 (2037)
Q Consensus 359 ~~fL~~~~~~~LP~LVl~~~~~~~~----~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~---~-~~~~~~~~l~~~~ 430 (2037)
...+....+.+++.+... ..+.+. ...+..++...+....+ .++.++..++.. + .......++..+.
T Consensus 559 ~~~~~~l~~~~~~~l~~~-~~~~e~~~~al~~l~~l~~~~~~~~~~----~~~~~l~~l~~~l~~~~~r~~a~~~l~~i~ 633 (1207)
T d1u6gc_ 559 TPYIKDLFTCTIKRLKAA-DIDQEVKERAISCMGQIICNLGDNLGS----DLPNTLQIFLERLKNEITRLTTVKALTLIA 633 (1207)
T ss_dssp HHHHHHHHHHHHHHHSCS-SSCHHHHHHHHHHHHHHHHHTGGGCCT----HHHHHHHHHHHHTTSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 334444444444444322 222221 22333343333333322 334444443321 1 1223334444332
Q ss_pred h-hcCCChHHHHHhhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcC
Q 000149 431 I-QTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLH 509 (2037)
Q Consensus 431 ~-~~~~~~~~~~~~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~ 509 (2037)
. ..+.+....+....+ +|.-.+...+. ..+ .+ ...++..+..... ..+.. ..+-.++..+.. ++.
T Consensus 634 ~~~~~~~~~~~l~~~~~----~l~~~l~~~~~--~~r-~~-al~~L~~l~~~~~--~~~~~---~~~~~~l~~l~~-ll~ 699 (1207)
T d1u6gc_ 634 GSPLKIDLRPVLGEGVP----ILASFLRKNQR--ALK-LG-TLSALDILIKNYS--DSLTA---AMIDAVLDELPP-LIS 699 (1207)
T ss_dssp TCSSCCCCHHHHHHHHH----HHHHHTTSCCH--HHH-HH-HHHHHHHHHHHCC--TTCCH---HHHHHHHTTCGG-GSC
T ss_pred HhccchhHHHHHHHHHH----HHHHhcccchH--HHH-HH-HHHHHHHHHHhcc--ccchh---HHHhhHHHhhcc-ccc
Confidence 2 233344444443333 33333333322 211 11 1233333332211 12221 222234444432 234
Q ss_pred CCChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCC--cchhhHHHHHHHH
Q 000149 510 AEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSP--SSTKHVISQVFAA 587 (2037)
Q Consensus 510 ~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~--~~l~~ll~~i~~~ 587 (2037)
..+...+..++..++.+++..++.+..+..+++..+...+..+.+...++.+-..++..+...+. .....++......
T Consensus 700 ~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~~ 779 (1207)
T d1u6gc_ 700 ESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGP 779 (1207)
T ss_dssp TTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTT
T ss_pred cccHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHhccccccchHHHHHHHHHh
Confidence 45677778888899998888877777666677666666666666777777777666665532111 1222222222111
Q ss_pred hhhhcccCCCCchhhHHHHHHHHHHHHHH----hHHHHHhhcccCCCCCCchhhHHHH-HHHH---HhcCCCCHHHHHHH
Q 000149 588 LIPFLERDKDNPSVLLNKVVKILEDLVLK----NRAILKQHIHEFPLLPSIAALTEVN-KAIQ---EARGPMTLKDQLLA 659 (2037)
Q Consensus 588 lip~~~~~~~~~~~~~~~~~~il~~Li~~----n~~~L~~~i~~lp~Lp~ip~L~~v~-~~l~---~~r~~~~l~~~l~~ 659 (2037)
+...-.. .........+...+..+... ....+...+...-.-...+...-.. ..+. ...+.....+....
T Consensus 780 ~~~~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~al~~Lge~~~~~~~~~~~~l~~~ 857 (1207)
T d1u6gc_ 780 VYSQSTA--LTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSV 857 (1207)
T ss_dssp TTTC------CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHHHHH
T ss_pred hccccch--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 1111110 00001111222233333222 1233333333332211111111100 1111 22233334456677
Q ss_pred HHhhccCCChhHHHHHHHHHHHHHhhcHHHHH----------------------HHHhccCCC-CchhHHHHHHHHHHHh
Q 000149 660 AVDGLNHENLNVRYMVVCELSKLLKLKSEDVT----------------------ALINGEACS-DLDVLSTLISSLLRGC 716 (2037)
Q Consensus 660 ~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~----------------------~~~~~e~~~-~~~vi~~Lv~sLL~~c 716 (2037)
|.+.+++++..||..|...|......+-+.+- ..+...... -.+.+..++..|+..|
T Consensus 858 l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp~il~~l~~~~~~~~~ll~al~ei~~~~~~~~~~~~~~~i~~~L~~~~ 937 (1207)
T d1u6gc_ 858 ILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHC 937 (1207)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHhcCchHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHh
Confidence 88999999999999888877665544432211 111111111 1234555555665544
Q ss_pred hhhccccchhhHHHHHHHhhcccCccCcccc
Q 000149 717 AEESRTVVGQKLKLVCADCLGALGAVDPAKV 747 (2037)
Q Consensus 717 ~~~~~t~~~~~I~~lca~CLG~IGalDp~r~ 747 (2037)
... ++.++..+++|||.|..+||..+
T Consensus 938 ~~~-----~~~vr~~~a~~lg~L~~~~~~~~ 963 (1207)
T d1u6gc_ 938 ECA-----EEGTRNVVAECLGKLTLIDPETL 963 (1207)
T ss_dssp CCS-----STTHHHHHHHHHHHHHHSSGGGT
T ss_pred CCC-----cHHHHHHHHHHHHHHHhcCHHHH
Confidence 332 35799999999999999999754
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=0.00049 Score=90.87 Aligned_cols=419 Identities=12% Similarity=0.165 Sum_probs=213.1
Q ss_pred hhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHH
Q 000149 164 VQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243 (2037)
Q Consensus 164 v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (2037)
++.+....|..+-.....++ +.. -+..+...+.+++-.+|+|+..+++++.+. ........-..++.
T Consensus 373 ~r~~a~~~L~~l~~~~~~~i-l~~---~l~~l~~~l~s~~~~~reaa~~alg~i~eg---------~~~~~~~~l~~li~ 439 (888)
T d1qbkb_ 373 LRKCSAAALDVLANVYRDEL-LPH---ILPLLKELLFHHEWVVKESGILVLGAIAEG---------CMQGMIPYLPELIP 439 (888)
T ss_dssp SHHHHHHHSTTTTTTCCSSS-HHH---HHHHHHHTTTSSSHHHHHHHHHHHHHHTTT---------SHHHHTTTHHHHHH
T ss_pred HHHHHHHHHhhHhhhhHHHH-HHH---HHHHHHHhhccchhHHHHHHHHHhhhhhhh---------HHHHhcccchhhhH
Confidence 45555555554444333332 222 223455566899999999999998886521 11111111234555
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCccccc
Q 000149 244 VIKLAFTAADDPLILETLLESTAELMMAVDV--HSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLV 321 (2037)
Q Consensus 244 ~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~--~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~ 321 (2037)
.+...+. -.+|.|+++.+.++|++...... ..+.+.-++-.|+..+..+|+.|+..|..-|..++...... +.
T Consensus 440 ~l~~~l~-d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~----l~ 514 (888)
T d1qbkb_ 440 HLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE----LV 514 (888)
T ss_dssp HHHHHTT-SSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTS----SG
T ss_pred HHHHhcc-CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh----hh
Confidence 5555443 46789999999999998542211 12233345566889999999999999999999888765332 23
Q ss_pred chhhhhhhhhhHHHHHhhcCchHH--------HHHHHHHHhCCC--hHHHHHhhcccccchhhhccccChh---HHHHHH
Q 000149 322 SKAVLICNELFDYLSVRLASRPIM--------VREFAEAAFGVE--TEELVKKMIPAVLPKLVVSQQDNDQ---AVNIIN 388 (2037)
Q Consensus 322 ~~~~~~~~~l~~~~~~~l~~~p~~--------~~~~~e~ll~~~--~~~fL~~~~~~~LP~LVl~~~~~~~---~~~~i~ 388 (2037)
++. +.+.+.+++-+...-.. +..+++ ..|-. ..+++....+..+...-.....+.. ..+.+.
T Consensus 515 p~~----~~il~~l~~~l~~~~~~~~~~~~~al~~l~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~ 589 (888)
T d1qbkb_ 515 PYL----AYILDTLVFAFSKYQHKNLLILYDAIGTLAD-SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLS 589 (888)
T ss_dssp GGH----HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH-HHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHH
T ss_pred hHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-hhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 333 35555555544322111 122222 12211 1233333322222211111111211 234556
Q ss_pred HHHHHcCCCchhHHhhhHHHHHHHHhcc----------------ccHHHHHHHHHHH---HhhcCCChHHHHHhhhHHHH
Q 000149 389 ELAKCLNTDMVPLIVTWIPKVLAFALHQ----------------ADERRLLSALEFY---CIQTGSDNQEIFAAALPALL 449 (2037)
Q Consensus 389 ~ia~~~~~~~~~l~~~~~~~Ila~ll~~----------------~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~l 449 (2037)
.++..++....+....-+..++..+... .+.+....++..+ ....+.....++... .++
T Consensus 590 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~--~l~ 667 (888)
T d1qbkb_ 590 SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARS--NIL 667 (888)
T ss_dssp HHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTS--CHH
T ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHh--hHH
Confidence 6667777766665544333333322110 1122222222222 222233333333211 011
Q ss_pred HHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHH
Q 000149 450 DELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEM 529 (2037)
Q Consensus 450 ~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l 529 (2037)
.-++..+.+.+.+. ++. ....+..+++. ....+..|+.. |+.+ +-.. ++.+....+..++.++|+|..-
T Consensus 668 ~~l~~~l~~~~~~v-r~~---a~~llgdl~~~--~~~~~~~~l~~-~~~~---l~~~-L~~~~~~v~~~a~~~ig~ia~~ 736 (888)
T d1qbkb_ 668 TLMYQCMQDKMPEV-RQS---SFALLGDLTKA--CFQHVKPCIAD-FMPI---LGTN-LNPEFISVCNNATWAIGEISIQ 736 (888)
T ss_dssp HHHHHHHTCSSHHH-HHH---HHHHHHHHHHH--CGGGTGGGHHH-HHHH---HHHT-CCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHH-HHH---HHHHHHHHHHh--hhHHHHHHHHH-HHHH---HHHH-hCcCCHHHHHHHHHHHHHHHHH
Confidence 11111222222221 111 11122222221 12334444443 3332 2222 2333456778899999999999
Q ss_pred hccccccchHHHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHHHHHH
Q 000149 530 IGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKI 609 (2037)
Q Consensus 530 ~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~i 609 (2037)
+|..+.++.|+|+..|...|+.++........=...+-.|...+|+.+.|.+++++..+...+..-.+.. .+..+..-
T Consensus 737 ~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~--ek~~~~~g 814 (888)
T d1qbkb_ 737 MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNE--EKDSAFRG 814 (888)
T ss_dssp TGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSH--HHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcH--HHHHHHHH
Confidence 9999999999999999999987765543222222233334445677888888887766655554332222 24556666
Q ss_pred HHHHHHHhHHH
Q 000149 610 LEDLVLKNRAI 620 (2037)
Q Consensus 610 l~~Li~~n~~~ 620 (2037)
|-.+|..|...
T Consensus 815 ~~~~i~~~p~~ 825 (888)
T d1qbkb_ 815 ICTMISVNPSG 825 (888)
T ss_dssp HHHHHHHCGGG
T ss_pred HHHHHHHCcHH
Confidence 66666666543
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=0.0012 Score=86.87 Aligned_cols=360 Identities=13% Similarity=0.133 Sum_probs=186.5
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc-ccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcc
Q 000149 240 KLLDVIKLAFTAADDPLILETLLESTAELMMAVD-VHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCE 318 (2037)
Q Consensus 240 ~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~-~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~ 318 (2037)
.++..+.+.+ ...|+.++|..+.++|.|+.+.. .-...+...+-.|+..|.++++.||..|..-|-++|........+
T Consensus 395 ~~l~~l~~~l-~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~ 473 (888)
T d1qbkb_ 395 HILPLLKELL-FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 473 (888)
T ss_dssp HHHHHHHHTT-TSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred HHHHHHHHhh-ccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3444554533 35678999999999999854321 112334445556899999999999999998888887765432111
Q ss_pred cccchhhhhhhhhhHHHHHhhcC-chHHHHHHHHHHhCCChHHHHHhhcccccch-------hhhc-cccChh----HHH
Q 000149 319 LLVSKAVLICNELFDYLSVRLAS-RPIMVREFAEAAFGVETEELVKKMIPAVLPK-------LVVS-QQDNDQ----AVN 385 (2037)
Q Consensus 319 l~~~~~~~~~~~l~~~~~~~l~~-~p~~~~~~~e~ll~~~~~~fL~~~~~~~LP~-------LVl~-~~~~~~----~~~ 385 (2037)
.+ ...+.+.+.+.+.. .|.. ++-|... ...|.....+...|+ |+.. .+.+.. +..
T Consensus 474 ---~~----~~~~l~~ll~~l~d~~~~V-~~~a~~a----l~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~ 541 (888)
T d1qbkb_ 474 ---TY----LKPLMTELLKRILDSNKRV-QEAACSA----FATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYD 541 (888)
T ss_dssp ---HH----TTTHHHHHHHHHSSSCHHH-HHHHHHH----HHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred ---hh----hhhhHHHHHHHhcCCCHHH-HHHHHHH----HHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 11 13556667777664 3444 3333222 233444333333333 2221 111111 113
Q ss_pred HHHHHHHHcCCCc-hhHHhhhHHHHHHHHhcc---cc--HHHHHHHHHHHHhhcCCChHHH----HHhhhHHHHHH----
Q 000149 386 IINELAKCLNTDM-VPLIVTWIPKVLAFALHQ---AD--ERRLLSALEFYCIQTGSDNQEI----FAAALPALLDE---- 451 (2037)
Q Consensus 386 ~i~~ia~~~~~~~-~~l~~~~~~~Ila~ll~~---~~--~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~l~e---- 451 (2037)
.+..++...+... .+-+.+.+..++-..+.. ++ ...+.+|+..+....+...... +..++..+...
T Consensus 542 al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 621 (888)
T d1qbkb_ 542 AIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQA 621 (888)
T ss_dssp HHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444333222 111111111111111111 11 1235667766665555443322 22222111111
Q ss_pred HHHhhcC-C--CchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHH-HHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHH
Q 000149 452 LICFVDG-G--DSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRN-HFVGLLNSIDRKMLHAEDLSLQKQALKRIEILI 527 (2037)
Q Consensus 452 ll~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~-~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li 527 (2037)
+...... . ..+.. ......+.+..+.+.+ ...+..|+.. .++.++ -.. +...+...|..++..+|.+.
T Consensus 622 ~~~~~~~~~~~~~~~~--~~~~~l~~l~~l~~~l--~~~~~~~~~~~~l~~~l---~~~-l~~~~~~vr~~a~~llgdl~ 693 (888)
T d1qbkb_ 622 MLNNAQPDQYEAPDKD--FMIVALDLLSGLAEGL--GGNIEQLVARSNILTLM---YQC-MQDKMPEVRQSSFALLGDLT 693 (888)
T ss_dssp HHHHHCTTTSCCCCTH--HHHHHHHHHHHHHHHH--TTTTHHHHHTSCHHHHH---HHH-HTCSSHHHHHHHHHHHHHHH
T ss_pred HHHhcccccccchhHH--HHHHHHHHHHHHHHHh--hhhhhhhhhHhhHHHHH---HHH-hCCCChHHHHHHHHHHHHHH
Confidence 1111111 0 01110 0001122233333221 1223333321 122222 212 23344567888999999999
Q ss_pred HHhccccccchHHHHHHHHHHhcCCCcchhhhHHHHH--HHHHhccCCCcchhhHHHHHHHHhhhhcccCCCCchhhHHH
Q 000149 528 EMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHF--FIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNK 605 (2037)
Q Consensus 528 ~l~g~~v~~~~pqI~a~L~saL~~~~L~~~~l~~W~~--fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~ 605 (2037)
+.+|.++.++.++++..|...|..+......-.||.+ ++..+. +++.|.+..++..+++.++..+ .+...++-
T Consensus 694 ~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~----~~~~py~~~il~~L~~il~~~~-~~~~v~~n 768 (888)
T d1qbkb_ 694 KACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG----IEMQPYIPMVLHQLVEIINRPN-TPKTLLEN 768 (888)
T ss_dssp HHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTG----GGGGGGSHHHHHHHHHHHTCTT-CCHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHcCCC-ccHHHHHH
Confidence 9999999999999999999999765433223345554 666654 5799999999999999997543 23334455
Q ss_pred HHHHHHHHHHHhHHHHHhhc
Q 000149 606 VVKILEDLVLKNRAILKQHI 625 (2037)
Q Consensus 606 ~~~il~~Li~~n~~~L~~~i 625 (2037)
+..-+-.|...+.+.+..++
T Consensus 769 ~~~~lgrl~~~~p~~~~~~l 788 (888)
T d1qbkb_ 769 TAITIGRLGYVCPQEVAPML 788 (888)
T ss_dssp HHHHHHHHHHHCHHHHGGGG
T ss_pred HHHHHHHHHHHCHHHHHhhH
Confidence 66677777777888776443
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.89 E-value=0.023 Score=72.61 Aligned_cols=388 Identities=14% Similarity=0.120 Sum_probs=197.7
Q ss_pred chhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhh----
Q 000149 163 EVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE---- 238 (2037)
Q Consensus 163 ~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 238 (2037)
.++.++...|..+.......+. .. -...++..+.+++-..|.++...+..+.+ ..+....
T Consensus 346 ~~~~~~~~~l~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~a~~~l~~i~~------------~~~~~~~~~~l 409 (861)
T d2bpta1 346 NVSMSAGACLQLFAQNCGNHIL-EP---VLEFVEQNITADNWRNREAAVMAFGSIMD------------GPDKVQRTYYV 409 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGH-HH---HHHHHHHHTTCSSHHHHHHHHHHHHHTSS------------SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhh-hh---hcchhhhhhhhHHHHHHHHHHHHHHHHHh------------hcchhhHHHHH
Confidence 4556666666666665554432 22 22455667799999999999998888651 1112222
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhcc
Q 000149 239 LKLLDVIKLAFTAADDPLILETLLESTAELMMAVD---VHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKG 315 (2037)
Q Consensus 239 ~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~---~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~ 315 (2037)
..++..+...+ .-.++.++++.+-++|++..... ...+.+...+-.|+..+ ..++.+...|..-+..++....+.
T Consensus 410 ~~~l~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 487 (861)
T d2bpta1 410 HQALPSILNLM-NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEA 487 (861)
T ss_dssp HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHh-cCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcc-ccChHHHHHHHHHHHHHHHHhhhc
Confidence 33455555544 34678899999999999854321 12344444455555555 445777777766666666654443
Q ss_pred CcccccchhhhhhhhhhHHHHHhhc---CchHHHHH----HHHHHhCCC---hHHHHHhhcccccchhhhccccC-----
Q 000149 316 GCELLVSKAVLICNELFDYLSVRLA---SRPIMVRE----FAEAAFGVE---TEELVKKMIPAVLPKLVVSQQDN----- 380 (2037)
Q Consensus 316 ~~~l~~~~~~~~~~~l~~~~~~~l~---~~p~~~~~----~~e~ll~~~---~~~fL~~~~~~~LP~LVl~~~~~----- 380 (2037)
..+...... ..+...+..... ..+..... +.. +.... ....+..+.+...+.|.-.-...
T Consensus 488 ~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~al~~-~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 562 (861)
T d2bpta1 488 TPSPIYNFY----PALVDGLIGAANRIDNEFNARASAFSALTT-MVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562 (861)
T ss_dssp SSCGGGGGH----HHHHHHHHHHHTCSCCGGGHHHHHHHHHHH-HHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred ccchhhHHH----hhHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 222222222 222233332221 11222111 111 11111 12222222222222222110000
Q ss_pred ---hh--------HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHh----cccc---HHHHHHHHHHHHhhcCCChHHHHH
Q 000149 381 ---DQ--------AVNIINELAKCLNTDMVPLIVTWIPKVLAFAL----HQAD---ERRLLSALEFYCIQTGSDNQEIFA 442 (2037)
Q Consensus 381 ---~~--------~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll----~~~~---~~~~~~~l~~~~~~~~~~~~~~~~ 442 (2037)
.. ...++..+....+....+. ...++..++ ...+ ++.+..++..+....+.+....+.
T Consensus 563 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~----~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~ 638 (861)
T d2bpta1 563 LEDAQSLQELQSNILTVLAAVIRKSPSSVEPV----ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE 638 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGG----HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHHHHhcchhhHHHH----HHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 00 0122333333333333332 233333322 2221 334555555444444444444444
Q ss_pred hhhHHHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCC-CChHHHHHHHH
Q 000149 443 AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHA-EDLSLQKQALK 521 (2037)
Q Consensus 443 ~~~~~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~-~~~~~k~~~l~ 521 (2037)
..+|.++ ..+.+.+.+.. .. ....+..+.+. ++..+.++.-.+++.+-..+.++ .+...|..++.
T Consensus 639 ~i~p~l~----~~l~~~~~~v~--~~--a~~~l~~i~~~------~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~ 704 (861)
T d2bpta1 639 TFSPYLL----KALNQVDSPVS--IT--AVGFIADISNS------LEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLS 704 (861)
T ss_dssp HHHHHHH----HHHHCTTSHHH--HH--HHHHHHHHHHH------TGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHH
T ss_pred HHhhHHH----HHhCCCCHHHH--HH--HHHHHHHHHHH------hHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 4444443 23334333221 11 11222222222 22334444445554443333332 23457888999
Q ss_pred HHHHHHHHhccccccchHHHHHHHHHHhcCC-------------CcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHh
Q 000149 522 RIEILIEMIGSHLTTYVPKILVLLMHAINKE-------------SLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAAL 588 (2037)
Q Consensus 522 sl~~li~l~g~~v~~~~pqI~a~L~saL~~~-------------~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~l 588 (2037)
+||.++.-+|+...++.|+|+..+..++... +|++.++.+|..+++.+.+ .++.+.|++..|+..+
T Consensus 705 ~l~~i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~~p~~~~i~~~i 783 (861)
T d2bpta1 705 VFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD-KPEALFPYVGTIFQFI 783 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888521 2678888999999998865 4567888888877665
Q ss_pred hhhc
Q 000149 589 IPFL 592 (2037)
Q Consensus 589 ip~~ 592 (2037)
...+
T Consensus 784 ~~~~ 787 (861)
T d2bpta1 784 AQVA 787 (861)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=0.00074 Score=77.25 Aligned_cols=262 Identities=11% Similarity=0.043 Sum_probs=153.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
++.+.+.+.|++++|..+|+++++..|++.+....+-.|+..+|+++......+......|+....+.. ...+-...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA-LAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccc-cccccccccc
Confidence 356678899999999999999999999999988888899999999998877666554444543322222 2234455666
Q ss_pred hhhHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhhhhhhhchhhHHhhhHHHHHhh
Q 000149 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2037)
Q Consensus 1199 Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~aR~~l~~~L~a~~~eSy~r~y~~l~kLh 1278 (2037)
|+...+.+...-.. .+....+ ......... ......+.+....+....
T Consensus 103 ~~~A~~~~~~~~~~------~~~~~~~-------------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 150 (323)
T d1fcha_ 103 QRQACEILRDWLRY------TPAYAHL-------------------VTPAEEGAG-------GAGLGPSKRILGSLLSDS 150 (323)
T ss_dssp HHHHHHHHHHHHHT------STTTGGG-------------------CC----------------------CTTHHHHHHH
T ss_pred ccccccchhhHHHh------ccchHHH-------------------HHhhhhhhh-------hcccccchhhHHHHHHhh
Confidence 65443332221100 0000000 000000000 000000000000000000
Q ss_pred hHHHHHHHHHHhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhhHHHHHhh-cCCCCCCchhHHHHHHHHH
Q 000149 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMV-FGASGLGAEVGNCWLQYAK 1357 (2037)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~lLslRr~v-~~~~~l~~~~~~~WL~~Ak 1357 (2037)
.+.. -+-..++++ +.+.. ..+..|...+.
T Consensus 151 ----------------------------------~~~~-------------a~~~~~~al~~~p~~---~~~~~~~~l~~ 180 (323)
T d1fcha_ 151 ----------------------------------LFLE-------------VKELFLAAVRLDPTS---IDPDVQCGLGV 180 (323)
T ss_dssp ----------------------------------HHHH-------------HHHHHHHHHHHSTTS---CCHHHHHHHHH
T ss_pred ----------------------------------HHHH-------------HHHHHHHHHHHhhcc---cccccchhhHH
Confidence 0000 000011111 12221 12457889999
Q ss_pred HHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCC
Q 000149 1358 LCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435 (2037)
Q Consensus 1358 lARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~ 1435 (2037)
+..+.|.++.|...+.++.... .+.+....|.++...|+.++|+..++++++..|
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----------------------- 237 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP----------------------- 237 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------------
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhh-----------------------
Confidence 9999999999999999987664 455677889999999999999999999876211
Q ss_pred CcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHH
Q 000149 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL 1501 (2037)
Q Consensus 1436 ~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~ 1501 (2037)
..++++..+|..+...|+ .+++++.|.+|++++|+...+++..+..+..+.
T Consensus 238 -------------~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 288 (323)
T d1fcha_ 238 -------------GYIRSRYNLGISCINLGA--HREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 288 (323)
T ss_dssp -------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred -------------ccHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHH
Confidence 114567778887777776 789999999999999988777776665554443
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.14 Score=65.34 Aligned_cols=100 Identities=15% Similarity=0.260 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcC---CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHh
Q 000149 512 DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINK---ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAAL 588 (2037)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~saL~~---~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~l 588 (2037)
+...+..++.+++.+++.+|.....+.|+|+-.|..+|.. ++.+..++.+...+..... +.+.|.+.+++..+
T Consensus 621 ~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~----~~~~~~~~~i~~~l 696 (876)
T d1qgra_ 621 SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ----SNIIPFCDEVMQLL 696 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhH----HhhhhhHHHHHHHH
Confidence 3456778999999999999999999999999999988853 3478888888888777753 57999999999999
Q ss_pred hhhcccCCCCchhhHHHHHHHHHHHHHH
Q 000149 589 IPFLERDKDNPSVLLNKVVKILEDLVLK 616 (2037)
Q Consensus 589 ip~~~~~~~~~~~~~~~~~~il~~Li~~ 616 (2037)
++.++..... ...+..+...+..++..
T Consensus 697 ~~~l~~~~~~-~~~k~~~~~~i~~i~~~ 723 (876)
T d1qgra_ 697 LENLGNENVH-RSVKPQILSVFGDIALA 723 (876)
T ss_dssp HHHHTCTTSC-GGGHHHHHHHHHHHHHH
T ss_pred HHHhCCccCC-HHHHHHHHHHHHHHHHH
Confidence 9999643222 23456677777776655
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=0.36 Score=61.26 Aligned_cols=319 Identities=13% Similarity=0.148 Sum_probs=162.2
Q ss_pred cCChhHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhhccCcccccchhhhhhh
Q 000149 252 ADDPLILETLLESTAELMMAVDV--HSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICN 329 (2037)
Q Consensus 252 ~~d~~i~eTll~~~~~i~~~~~~--~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~~~~~~l~~~~~~~~~~ 329 (2037)
..+...++..+..++.++.+... -.+.....+-.++..|..+++.||..|..-+-.+|+....... .... ..
T Consensus 377 ~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~~---~~ 450 (876)
T d1qgra_ 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI---NDVY---LA 450 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS---STTT---HH
T ss_pred cchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhh---hHHH---hh
Confidence 36677888888888887432211 1233334555688899999999999999999999887644221 1111 14
Q ss_pred hhhHHHHHhhcCchHHHHHHHHHHhCCChHHHHHhh---------------------cccccchhhhc-c---ccC----
Q 000149 330 ELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKM---------------------IPAVLPKLVVS-Q---QDN---- 380 (2037)
Q Consensus 330 ~l~~~~~~~l~~~p~~~~~~~e~ll~~~~~~fL~~~---------------------~~~~LP~LVl~-~---~~~---- 380 (2037)
.+.+.+...+-..|......|. .+ ..+.... .+.+++.|... . ..+
T Consensus 451 ~~~~~l~~~l~~~~~v~~~~~~-~l----~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~ 525 (876)
T d1qgra_ 451 PLLQCLIEGLSAEPRVASNVCW-AF----SSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH-HH----HHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHH
Confidence 5667777777777776555443 11 1111111 01111111110 0 000
Q ss_pred hhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhc---c-------ccHHHHHHHHHH----HHhhcCCChHHHHHhhhH
Q 000149 381 DQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALH---Q-------ADERRLLSALEF----YCIQTGSDNQEIFAAALP 446 (2037)
Q Consensus 381 ~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~---~-------~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~ 446 (2037)
..+...+..+......+..+.+...++.++..+-. . ........+... +......-..+......+
T Consensus 526 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 605 (876)
T d1qgra_ 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISD 605 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHH
Confidence 00122333333333334444444444444333221 0 011111111111 111111111223333333
Q ss_pred HHHHHHHHhhcCCCchHHhhhhcchhHHHHHHhhhcCCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHH
Q 000149 447 ALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEIL 526 (2037)
Q Consensus 447 ~~l~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~l 526 (2037)
.++..++-.+...+.+...+. .+..++..+.... ++.+..|+.. ++..+ -..+.+..+...+..++..++.+
T Consensus 606 ~i~~~l~~~l~~~~~~~~~~~--~~l~~l~~l~~~~--~~~~~~~l~~-ii~~l---~~~l~~~~~~~v~~~a~~~l~~l 677 (876)
T d1qgra_ 606 VVMASLLRMFQSTAGSGGVQE--DALMAVSTLVEVL--GGEFLKYMEA-FKPFL---GIGLKNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp HHHHHHHHHC-----CCHHHH--HHHHHHHHHHHHH--GGGGGGGHHH-HHHHH---HHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcchHH--HHHHHHHHHHHHc--chhhHHHHHH-HHHHH---HHHHhCCCcHHHHHHHHHHHHHH
Confidence 444333222221111111111 1122333333222 2333444432 33222 22222233456778899999999
Q ss_pred HHHhccccccchHHHHHHHHHHhcCC----CcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhhcc
Q 000149 527 IEMIGSHLTTYVPKILVLLMHAINKE----SLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2037)
Q Consensus 527 i~l~g~~v~~~~pqI~a~L~saL~~~----~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2037)
.+-+|.++.++.++|+..|-..|+.+ +++..++.|+..++..+.+ +..+.+.+++..+.+...
T Consensus 678 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~~----~~~~yl~~~l~~l~~~~~ 744 (876)
T d1qgra_ 678 CRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGG----EFKKYLEVVLNTLQQASQ 744 (876)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGG----GGGGGHHHHHHHHHHHHT
T ss_pred HHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHhH----hhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999754 4667889999999998853 566777777777665543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=96.58 E-value=0.62 Score=51.27 Aligned_cols=108 Identities=15% Similarity=0.075 Sum_probs=80.9
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--C----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000149 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--P----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2037)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~--p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~ 1419 (2037)
......|...+.+....|.++.|...+.++..... + .....-|..+...|+..+|+..++.++....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------- 282 (366)
T d1hz4a_ 210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR------- 282 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------
T ss_pred chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-------
Confidence 34566788899999999999999999888765432 1 1334468889999999999999998875210
Q ss_pred ccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000149 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2037)
Q Consensus 1420 ~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~ 1485 (2037)
.....+..++++..+|.-....|+ .+++.+.|++|+++.+.
T Consensus 283 -----------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 283 -----------------------SLRLMSDLNRNLLLLNQLYWQAGR--KSDAQRVLLDALKLANR 323 (366)
T ss_dssp -----------------------HTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHH
T ss_pred -----------------------hcccChHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHhhh
Confidence 011234567889999998888886 78889999999887653
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.57 E-value=0.098 Score=58.79 Aligned_cols=62 Identities=11% Similarity=-0.046 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2037)
...|...+.+..+.|+++.|.....+|.+.. .+.+....+.++...|+.++|+..++++++-
T Consensus 206 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 206 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5679999999999999999999999987764 4567778899999999999999999999873
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.29 E-value=0.13 Score=60.32 Aligned_cols=108 Identities=7% Similarity=-0.015 Sum_probs=69.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHhHhhh---hhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 000149 194 CIEFLLLNKRKAIRDAFCTQIGYFLQ---DTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMM 270 (2037)
Q Consensus 194 ~~~~~~~~~~r~vR~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~ 270 (2037)
.|. .+.+++..++..|+..+..++. ++-.+.+. +..++..+-+.+...+++.++.....+++.+..
T Consensus 18 lv~-~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~----------~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~ 86 (434)
T d1q1sc_ 18 IVK-GINSNNLESQLQATQAARKLLSREKQPPIDNII----------RAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 86 (434)
T ss_dssp HHH-HHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHH----------HTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHT
T ss_pred HHH-HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHH----------HCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 344 3489999999999999987651 11000011 112344566666666778899988899998843
Q ss_pred hhcccchh-H-HHHHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 271 AVDVHSQH-F-LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 271 ~~~~~~e~-~-~~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
..+..... . .-++-.|+..|.++++-++..|..-+.++|...
T Consensus 87 ~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~ 130 (434)
T d1q1sc_ 87 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130 (434)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccc
Confidence 22111111 1 123556889999999999999998888886543
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.14 Score=59.61 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=49.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHhc--CCCcchhhhHHHHHHHHHhcc
Q 000149 509 HAEDLSLQKQALKRIEILIEMIGS-HLTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSR 571 (2037)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~L~saL~--~~~L~~~~l~~W~~fv~~L~~ 571 (2037)
++++...|.-++.+|+.+++.+++ .+..+.|+|+-.|...++ .+.+|..|+.|-..+...+.+
T Consensus 375 ~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~ 440 (458)
T d1ibrb_ 375 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 440 (458)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 445566777789999999876654 678899999999999996 456888888877778877743
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=1.5 Score=52.54 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=81.0
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 000149 192 IKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMA 271 (2037)
Q Consensus 192 ~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~ 271 (2037)
+..|-.+|.+.|..||..++..+..+..+......+ .....++..+-+.+...+|+.+++....+++.+...
T Consensus 19 ip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~--------~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~ 90 (529)
T d1jdha_ 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI--------MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHH--------HTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHH--------HHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 346677789999999999999988864221110100 011346777778888889999999999999998543
Q ss_pred hcccchhHH-HHHHHHHHHhCCCCcchHHHHHHHHHHHHhhhh
Q 000149 272 VDVHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHL 313 (2037)
Q Consensus 272 ~~~~~e~~~-~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~~ 313 (2037)
.+...+++. -++-.|+..|+++++-++..|..-|.++|....
T Consensus 91 ~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~ 133 (529)
T d1jdha_ 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT
T ss_pred chhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc
Confidence 332222222 235668899999999999999999999988764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.091 Score=56.99 Aligned_cols=87 Identities=20% Similarity=0.142 Sum_probs=64.7
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
...|...|+|++|..+|+++++..|++.....++=.|+..+|+++..+...+......|.....+..++ .+-+.+|+|+
T Consensus 44 G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg-~~~~~~g~~~ 122 (259)
T d1xnfa_ 44 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALYYGGRDK 122 (259)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH-HHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH-HHHHHHhhHH
Confidence 455788899999999999999999998888777778889999998877777766655555433333333 5667888887
Q ss_pred hHHHHhhc
Q 000149 1201 LMDEYLSG 1208 (2037)
Q Consensus 1201 ~lee~l~~ 1208 (2037)
.-.++...
T Consensus 123 ~A~~~~~~ 130 (259)
T d1xnfa_ 123 LAQDDLLA 130 (259)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.72 E-value=0.071 Score=51.74 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=70.8
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
+.++.-.+-+.|+|++|..+|+.+++..|++.....++=.|+..+|+++..+...+......|....-+.. ...+.-.+
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~g~~~~~~ 84 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR-KAAALEFL 84 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHH-HHHHHHHc
Confidence 34566778899999999999999999999999888888889999999998877776655555654444433 34477789
Q ss_pred CChhhHHHHhhcc
Q 000149 1197 GRWDLMDEYLSGA 1209 (2037)
Q Consensus 1197 g~Wd~lee~l~~~ 1209 (2037)
|+|+...+.+...
T Consensus 85 ~~~~~A~~~~~~a 97 (117)
T d1elwa_ 85 NRFEEAKRTYEEG 97 (117)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9998876665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.2 Score=48.44 Aligned_cols=107 Identities=10% Similarity=-0.018 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCC
Q 000149 1352 WLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSL 1429 (2037)
Q Consensus 1352 WL~~AklARKag~~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~ 1429 (2037)
...-+..+-+.|+++.|.....+|....+ +.+....|..+...|+..+|+..++.+++-.|
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----------------- 68 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP----------------- 68 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc-----------------
Confidence 35668888899999999999999877654 45677889999999999999999998876321
Q ss_pred CCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1430 VPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1430 ~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
..++++..+|.-+...|+ .++++..|++|++++|+-...+..+++-
T Consensus 69 -------------------~~~~~~~~~g~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 69 -------------------DWGKGYSRKAAALEFLNR--FEEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred -------------------chhhHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 114467777776666665 7888999999999999988887777653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=2.7 Score=45.70 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhh----cCCC----hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000149 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQA----SGAP----NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~aLl~a~~----~~~p----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2037)
.....|...|.+....|.++.|...+.++.. .+.+ .+.+-.|.+++..|+..+|+..++++++
T Consensus 249 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 249 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455677889999999999999988877642 2322 3566789999999999999999999875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.57 E-value=0.05 Score=56.87 Aligned_cols=91 Identities=13% Similarity=0.059 Sum_probs=73.9
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
+.++.-.+-+.|+|++|+.+|+++++..|++.....++=.|+.++|+|+..+...+..+.-.|.....|. ....+-..+
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~-~lg~~~~~l 85 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF-FLGQCQLEM 85 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHH-HHHHHHHHC
Confidence 4566777889999999999999999999999998888889999999999998888877776776555443 345677889
Q ss_pred CChhhHHHHhhc
Q 000149 1197 GRWDLMDEYLSG 1208 (2037)
Q Consensus 1197 g~Wd~lee~l~~ 1208 (2037)
|+|+.-.+++..
T Consensus 86 ~~~~~A~~~~~~ 97 (201)
T d2c2la1 86 ESYDEAIANLQR 97 (201)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999887665543
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.35 E-value=4.2 Score=46.37 Aligned_cols=202 Identities=10% Similarity=0.045 Sum_probs=98.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhccccccchHH-HHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHH
Q 000149 508 LHAEDLSLQKQALKRIEILIEMIGSHLTTYVPK-ILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQV 584 (2037)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pq-I~a~L~saL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i 584 (2037)
...++...++.++.++..+++..+..+....++ +..++..++. .++++..++..|..+...-.. ..+. .
T Consensus 225 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~-------~~~~-~ 296 (458)
T d1ibrb_ 225 TQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD-------LAIE-A 296 (458)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH-------HHHH-H
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH-------HHHh-h
Confidence 344567788899999999999988766555433 3444455543 445667777777766543210 0000 0
Q ss_pred HHHhhhhcccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCCchh------hHHHHHHHHHhcCCCCHHHHHH
Q 000149 585 FAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAA------LTEVNKAIQEARGPMTLKDQLL 658 (2037)
Q Consensus 585 ~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~------L~~v~~~l~~~r~~~~l~~~l~ 658 (2037)
............. . ...+...++.++..-. +...+....++... ....-..+-...+..-+..-+.
T Consensus 297 ~~~~~~~~~~~~~-~---~~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~ 368 (458)
T d1ibrb_ 297 SEAAEQGRPPEHT-S---KFYAKGALQYLVPILT----QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLP 368 (458)
T ss_dssp CCTTCSSSCSSCC-C---CCHHHHHHHHHHHHHH----HHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred hhHHHhhhHHHHH-H---HHHHHHHHHHHhhhHH----hhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHH
Confidence 0000000000000 0 0112222222221111 11111111111111 1111111222223222334445
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcc
Q 000149 659 AAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGA 738 (2037)
Q Consensus 659 ~~~~rl~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~ 738 (2037)
.+.+.+++++..+|.-|+.-|..+... +.++.. .+.+.+++..|+.+..+. ++.+|..+..|||.
T Consensus 369 ~i~~~l~s~~~~~r~aal~~l~~i~~~--------~~~~~~--~~~l~~i~~~l~~~l~d~-----~~~VR~~a~~~l~~ 433 (458)
T d1ibrb_ 369 FIKEHIKNPDWRYRDAAVMAFGCILEG--------PEPSQL--KPLVIQAMPTLIELMKDP-----SVVVRDTAAWTVGR 433 (458)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSS--------SCTTTT--CTTTTTHHHHHHHGGGCS-----CHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHh--------cCHhHH--HHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHH
Confidence 566888899999998887766533211 001111 245667778787776543 26899999999998
Q ss_pred cC
Q 000149 739 LG 740 (2037)
Q Consensus 739 IG 740 (2037)
|.
T Consensus 434 i~ 435 (458)
T d1ibrb_ 434 IC 435 (458)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=94.17 E-value=0.082 Score=50.92 Aligned_cols=79 Identities=11% Similarity=-0.026 Sum_probs=67.6
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHH
Q 000149 1384 HMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHY 1463 (2037)
Q Consensus 1384 ~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~ 1463 (2037)
.++.+..+..+|+..+|+..+++++...| ..+.++..+|.+...
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p------------------------------------~~~~a~~~lg~~~~~ 62 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEP------------------------------------EREEAWRSLGLTQAE 62 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhccccc------------------------------------ccchhhhhhhhhhhh
Confidence 46789999999999999999999986321 125688999999888
Q ss_pred hCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1464 TGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1464 s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
.++ .++++..|++|++++|....+|+.+|..|..+
T Consensus 63 ~~~--~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 63 NEK--DGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp TTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hhh--HHHhhcccccccccccccccchHHHHHHHHHC
Confidence 776 88999999999999999999999999988655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.12 Score=52.49 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=72.6
Q ss_pred hhHHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhc
Q 000149 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2037)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrl 1196 (2037)
+.++...+-+.|+|++|..+|+++++..|++......+=.|+..+|+|+......+..+.-.|+...-|. ....+.-.+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~-~~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY-RRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHH-HHHHHHHHc
Confidence 5566777889999999999999999999999998888899999999999988887776666665544333 234456678
Q ss_pred CChhhHHHHhhcc
Q 000149 1197 GRWDLMDEYLSGA 1209 (2037)
Q Consensus 1197 g~Wd~lee~l~~~ 1209 (2037)
|+|+.-.++....
T Consensus 92 g~~~eA~~~~~~a 104 (159)
T d1a17a_ 92 GKFRAALRDYETV 104 (159)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9998876665543
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.83 E-value=2.7 Score=49.80 Aligned_cols=257 Identities=11% Similarity=0.033 Sum_probs=135.2
Q ss_pred cCccchhHHHHHHHHHHHccCCc---hhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh--hhhhhhhccccccc
Q 000149 159 ESSEEVQLSCVRVIRRILVHGTR---DVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ--DTVLSSLFLDENAS 233 (2037)
Q Consensus 159 ~~~~~v~~~~~~~l~~il~h~~~---~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~--~~~~~~~~~~~~~~ 233 (2037)
....+.+...+..++++|..... +.+++. +---..++.+-.+.+..++..++..+..+.. ......+..
T Consensus 87 s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~-g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~----- 160 (503)
T d1wa5b_ 87 SDDMQEQLSATVKFRQILSREHRPPIDVVIQA-GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVD----- 160 (503)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHT-TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCchHHHHHHC-CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHh-----
Confidence 34456778888999998843221 122221 1111233444346788999999998887541 111111111
Q ss_pred cchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHHhCCCCcchHHHHHHHHHHHHhh
Q 000149 234 SRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2037)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~~~~~a~~~i~~la~~ 311 (2037)
..++..+.+.+ ...++.+++.++-+++.|........+.+. -.+-.|+..+.++++.+.-.|..-|.++|++
T Consensus 161 -----~g~i~~l~~lL-~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~ 234 (503)
T d1wa5b_ 161 -----ADAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 234 (503)
T ss_dssp -----TTCHHHHHHHH-HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred -----CCChHHHHHHh-cCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence 11233344433 356778999999999998432211122221 1244578888999998988999999999875
Q ss_pred hhccCcccccchhhhhhhhhhHHHHHhhcC-chHHHHHHHHH---HhCCChHHHHHhhcccccchhhhccccChh--HHH
Q 000149 312 HLKGGCELLVSKAVLICNELFDYLSVRLAS-RPIMVREFAEA---AFGVETEELVKKMIPAVLPKLVVSQQDNDQ--AVN 385 (2037)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~-~p~~~~~~~e~---ll~~~~~~fL~~~~~~~LP~LVl~~~~~~~--~~~ 385 (2037)
....+ . ......+.+.+++-+.+ .|.+....|.. +..-+.+..-.....-++|.|+-.-+.+.. ...
T Consensus 235 ~~~~~------~-~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~ 307 (503)
T d1wa5b_ 235 KKPQP------D-WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 307 (503)
T ss_dssp SSSCC------C-HHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred Cccch------H-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhh
Confidence 42221 1 12224566777777653 44444443331 222233222223345567777654332221 123
Q ss_pred HHHHHHHHcCC--CchhHH-hhhHHHHHHHHhccccHHHHHHHHHHHHhhcC
Q 000149 386 IINELAKCLNT--DMVPLI-VTWIPKVLAFALHQADERRLLSALEFYCIQTG 434 (2037)
Q Consensus 386 ~i~~ia~~~~~--~~~~l~-~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~ 434 (2037)
.+..|...... .....+ ...+..+|..++..+.+.....++..+.+...
T Consensus 308 al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~ 359 (503)
T d1wa5b_ 308 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 359 (503)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhh
Confidence 33444433322 233333 44666777777776665544444444444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.25 E-value=0.11 Score=54.22 Aligned_cols=80 Identities=19% Similarity=0.151 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHH
Q 000149 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2037)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~ 1462 (2037)
...+....++.+|+..+|+...+++++..| . .+.++..+|.-+.
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-------------------~-----------------~~~~~~~lg~~y~ 49 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-------------------L-----------------VAVYYTNRALCYL 49 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-------------------C-----------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------C-----------------CHHHHHhHHHHHh
Confidence 456788999999999999999999886322 1 1445666676666
Q ss_pred HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1463 YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1463 ~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
..|+ .+++++.|.+|++++|++.++|+.+|.-|.++
T Consensus 50 ~~~~--~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l 85 (201)
T d2c2la1 50 KMQQ--PEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (201)
T ss_dssp HTTC--HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred hhhh--hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 6665 78899999999999999999999999877433
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.21 E-value=5.9 Score=46.73 Aligned_cols=103 Identities=6% Similarity=-0.017 Sum_probs=59.8
Q ss_pred hcccHHHHHHHHHHHhHhhhh---hhhhhhccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc
Q 000149 200 LNKRKAIRDAFCTQIGYFLQD---TVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS 276 (2037)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~ 276 (2037)
.+.+...+..+...+...+.. +-.+.++. ..++..+-+.+....|+.++...+-.++.|+...+...
T Consensus 86 ~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~----------~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~ 155 (503)
T d1wa5b_ 86 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQ----------AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 155 (503)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHH----------TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCchHHHHHH----------CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 667777777766666665411 11111111 11344556666666778888888888888753222122
Q ss_pred hhHHH--HHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 277 QHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 277 e~~~~--~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
+.+.- ++-.|+..|.+++.-++-.|..-|-++|...
T Consensus 156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~ 193 (503)
T d1wa5b_ 156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 193 (503)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhh
Confidence 22211 2344677777888888888888888886543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=92.91 E-value=0.69 Score=49.60 Aligned_cols=114 Identities=15% Similarity=0.013 Sum_probs=88.7
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccc
Q 000149 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAIS 1422 (2037)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~ 1422 (2037)
+.+.+..|...+.+-++.|+++.|.....+|.... .+.+....|.++-..|+..+|+..++++++..|
T Consensus 33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------- 102 (259)
T d1xnfa_ 33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP---------- 102 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh----------
Confidence 44567889999999999999999999999998875 445666789999999999999999999886322
Q ss_pred cccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1423 ~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
. .+.++.-+|.-+...|+ .+++++.|.++++.+|.-...+..++..
T Consensus 103 ---------~-----------------~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~ 148 (259)
T d1xnfa_ 103 ---------T-----------------YNYAHLNRGIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWLYLA 148 (259)
T ss_dssp ---------T-----------------CTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---------h-----------------hhhhHHHHHHHHHHHhh--HHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 1 02355666666655554 6788999999999999876666655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=92.61 E-value=0.12 Score=49.56 Aligned_cols=85 Identities=14% Similarity=-0.060 Sum_probs=53.9
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCC
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~ 1198 (2037)
+..+.+.+.|++.+|..+|++++...|++......+=.|+..+|+++......+....-.|+...-|..++ .+--..|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la-~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA-VSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHH-HHHHHCCC
Confidence 34556777888888888888888888887777777777788888887777666655555554433333222 22233455
Q ss_pred hhhHHH
Q 000149 1199 WDLMDE 1204 (2037)
Q Consensus 1199 Wd~lee 1204 (2037)
|+.-.+
T Consensus 100 ~~~A~~ 105 (112)
T d1hxia_ 100 ANAALA 105 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.92 E-value=6.9 Score=44.65 Aligned_cols=154 Identities=13% Similarity=0.074 Sum_probs=90.6
Q ss_pred HHHHHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hhhhhh-h
Q 000149 149 LNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DTVLSS-L 226 (2037)
Q Consensus 149 ~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~~~~~-~ 226 (2037)
-+.+.++|-.....+||..+..+|..+..+.+.....=....-+..+-.+|.+++..+|+.+..++..+.. ++-... +
T Consensus 58 i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 137 (434)
T d1q1sc_ 58 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137 (434)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHH
Confidence 35577788666677899888899999887765432110112233444556699999999999999887641 111111 1
Q ss_pred ccccccccchhhHHHHHHHHHHhhhcCCh----hHHHHHHHHHHHHHhhhcccc--hhHHHHHHHHHHHhCCCCcchHHH
Q 000149 227 FLDENASSRSNELKLLDVIKLAFTAADDP----LILETLLESTAELMMAVDVHS--QHFLFLLILLVEQLDNPHVTVRMN 300 (2037)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~i~eTll~~~~~i~~~~~~~~--e~~~~~l~~Li~~L~~~n~~~~~~ 300 (2037)
+. ...+..+-..+....+. ..+..+..++..++....... +...-.+-.|+..|.+.++-++..
T Consensus 138 ~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~ 207 (434)
T d1q1sc_ 138 IK----------HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD 207 (434)
T ss_dssp HH----------TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HH----------hhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhh
Confidence 11 12233444444433322 334445555555533222222 233334555777888999999999
Q ss_pred HHHHHHHHHhhh
Q 000149 301 ASRLIRKSCFFH 312 (2037)
Q Consensus 301 a~~~i~~la~~~ 312 (2037)
|..-|.+++.+.
T Consensus 208 a~~~l~~l~~~~ 219 (434)
T d1q1sc_ 208 SCWAISYLTDGP 219 (434)
T ss_dssp HHHHHHHHTSSC
T ss_pred HHhhhcccchhh
Confidence 999888887654
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.60 E-value=0.29 Score=54.05 Aligned_cols=143 Identities=11% Similarity=0.081 Sum_probs=98.1
Q ss_pred cCccchhHHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-hhhhhhccccccccc
Q 000149 159 ESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-TVLSSLFLDENASSR 235 (2037)
Q Consensus 159 ~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 235 (2037)
..+++++-..+.+|..++. ...+ .+.+. +-+.-.|..++.+++..||..++..+..+.++ +.....+.
T Consensus 28 ~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~-gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~------- 98 (264)
T d1xqra1 28 AADQQEREGALELLADLCE-NMDNAADFCQL-SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL------- 98 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SHHHHHHHHHT-THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHc-CCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4567778888999999883 3322 12222 33444556677899999999999999998743 22211111
Q ss_pred hhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHHhCCCCcchHHHHHHHHHHHHhhh
Q 000149 236 SNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2037)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~~~~~a~~~i~~la~~~ 312 (2037)
+...+..+-..+....++.+++..+-+++.+++..+...+.+.. .+-.|+..|.+++..++..|...|.+++...
T Consensus 99 --~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~ 175 (264)
T d1xqra1 99 --GLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 175 (264)
T ss_dssp --HTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred --HcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhcc
Confidence 11245556666777788999999999999986544333444322 2556889999999999999999999997654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.37 Score=44.75 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHH
Q 000149 1382 NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWI 1461 (2037)
Q Consensus 1382 ~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl 1461 (2037)
+-..+-++.+..+|+..+|+..++++++..+. ++. .....+.++.-+|.-.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~-------------------~~~----------~~~~~~~~l~~Lg~~~ 56 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDE-------------------GEI----------STIDKVSVLDYLSYAV 56 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------------------TCC----------CSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh-------------------hhc----------cCccHHHHHHHHhhHH
Confidence 44568899999999999999999999863221 000 0113466777788777
Q ss_pred HHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000149 1462 HYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2037)
Q Consensus 1462 ~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~ 1497 (2037)
...|+ .+++++.|++|++++|+.+.+++.++.|.
T Consensus 57 ~~~g~--~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~ 90 (95)
T d1tjca_ 57 YQQGD--LDKALLLTKKLLELDPEHQRANGNLKYFE 90 (95)
T ss_dssp HHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhcCC--hHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 77776 89999999999999999999999997654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.24 Score=48.53 Aligned_cols=58 Identities=9% Similarity=0.121 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhc
Q 000149 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLIS 1176 (2037)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~ 1176 (2037)
+....|-..|+|++|..||+++++..|++.....++=.|+..+|+|+..+...+-.+.
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 3455677889999999999999999999999888899999999999988777665443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=1.2 Score=44.62 Aligned_cols=110 Identities=12% Similarity=-0.005 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~ 1426 (2037)
++...+-+..+=+.|.++.|.....+|.+.++. .+..-.+.++...|+..+|+..++.+++-.|
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-------------- 75 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------------- 75 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc--------------
Confidence 445566677777999999999999998887644 4566889999999999999999999876321
Q ss_pred cCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000149 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2037)
Q Consensus 1427 l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y 1496 (2037)
.-++++..+|.-+...|+ .++++..|.++++++|.-..++..+++-
T Consensus 76 ----------------------~~~~a~~~~g~~~~~~g~--~~eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 76 ----------------------KYIKGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ----------------------cchHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 114566667776666665 7788899999999999888777776543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.73 Score=47.27 Aligned_cols=109 Identities=13% Similarity=0.181 Sum_probs=75.9
Q ss_pred HHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHHH
Q 000149 1046 LARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNK 1125 (2037)
Q Consensus 1046 La~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~E 1125 (2037)
.+...++-+.|..|+.+++.-+.-..... .........+..+... +. ......|.
T Consensus 19 ~G~~~~~~~~~~~Ai~~y~~al~~~~~~~--------~~~~~~~~~~~~~~~~---------~~--------~nla~~y~ 73 (170)
T d1p5qa1 19 RGTVYFKEGKYKQALLQYKKIVSWLEYES--------SFSNEEAQKAQALRLA---------SH--------LNLAMCHL 73 (170)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCC--------CCCSHHHHHHHHHHHH---------HH--------HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcc--------ccchHHHhhhchhHHH---------HH--------HHHHHHHH
Confidence 46678888999999999998776432211 1111222222222211 00 11234578
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
+.|+|++|..+|+.++..+|++......+-.|+..+|+|+..+...+....-.|
T Consensus 74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999988877766554444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=1.8 Score=48.71 Aligned_cols=139 Identities=9% Similarity=0.045 Sum_probs=104.7
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCC-chHHHHHHHHHhhcCCcccccccc
Q 000149 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGSTA 1420 (2037)
Q Consensus 1344 l~~~~~~~WL~~AklARKag~~~~A~~aLl~a~~~~~p~--~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~g~~~ 1420 (2037)
.+++-.+.+-.++.+-++.++++.|.....+|...++.+ +..-.+.++.+.|. .++|+..++.+++..|.
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~------- 110 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------- 110 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-------
T ss_pred cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-------
Confidence 456677888888999999999999999999998887654 55567788888775 68999999998763221
Q ss_pred cccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000149 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2037)
Q Consensus 1421 ~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l 1500 (2037)
.+.++..+|.-+...|+ .++++..|.+|++++|+...+|+++|..+.++
T Consensus 111 -----------------------------~~~a~~~~~~~~~~l~~--~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~ 159 (315)
T d2h6fa1 111 -----------------------------NYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEF 159 (315)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred -----------------------------hhhHHHHHhHHHHhhcc--HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH
Confidence 13455555555555555 56788999999999999999999999877544
Q ss_pred HHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1501 LVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1501 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
- . ...|+.+|-+++...+.+
T Consensus 160 ~-----~-----------------~~~Al~~~~~al~~~p~n 179 (315)
T d2h6fa1 160 K-----L-----------------WDNELQYVDQLLKEDVRN 179 (315)
T ss_dssp T-----C-----------------CTTHHHHHHHHHHHCTTC
T ss_pred H-----h-----------------hHHHHHHHHHHHHHCCcc
Confidence 1 0 014788888888877654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=90.67 E-value=0.84 Score=46.57 Aligned_cols=107 Identities=13% Similarity=0.257 Sum_probs=74.8
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhH----HHHHHHHhhCCChHHHHHHHHHhccCChhHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDV----SFLMEIYSFLDEPDGLSGLARLHKSLSLQDE 1120 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~----~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~q 1120 (2037)
-.+...++.|.|..|+.+++..+.-...... ...+.. .....+|. ..
T Consensus 20 e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~--------~~~~~~~~~~~~~~~~~~---------------------Nl 70 (168)
T d1kt1a1 20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYG--------LSEKESKASESFLLAAFL---------------------NL 70 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS--------CCHHHHHHHHHHHHHHHH---------------------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--------cchhhhhhcchhHHHHHH---------------------hH
Confidence 4677888899999999988876654322111 011111 11111221 23
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
...|.+.|+|.+|+.+|+.+++..|++.......-.|+..+|+|+......+..+.-.|+
T Consensus 71 a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~ 130 (168)
T d1kt1a1 71 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 130 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 455788999999999999999999999998888889999999999887776665555554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.12 E-value=3.1 Score=46.50 Aligned_cols=85 Identities=9% Similarity=-0.019 Sum_probs=51.6
Q ss_pred HHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccC--hHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChhh
Q 000149 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCH--LQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2037)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq--~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd~ 1201 (2037)
+...|++.+|+.+|+.+++..|++...-...-.++..+|+ ++..+...+......|.....+......+.+..|.++.
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence 4577889999999999999999987654444445555554 66655555444433343333333334445555666665
Q ss_pred HHHHhhc
Q 000149 1202 MDEYLSG 1208 (2037)
Q Consensus 1202 lee~l~~ 1208 (2037)
.-++...
T Consensus 163 Al~~~~~ 169 (334)
T d1dcea1 163 ELAFTDS 169 (334)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=90.00 E-value=0.99 Score=45.36 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=51.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh
Q 000149 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2037)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~ 1180 (2037)
....|.+.|+|++|+.+|+.+|+.+|++......+-.|+..+|+|+..+...+..+.-.|+
T Consensus 73 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 73 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4456889999999999999999999999999889999999999999888777665544453
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.77 E-value=1.1 Score=50.70 Aligned_cols=142 Identities=6% Similarity=-0.081 Sum_probs=103.6
Q ss_pred hhHHHHHHHHHHHHHcCC-hHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000149 1347 EVGNCWLQYAKLCRLAGH-YETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2037)
Q Consensus 1347 ~~~~~WL~~AklARKag~-~~~A~~aLl~a~~~~~--p~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~ 1423 (2037)
+....|..-+.+..+.|. ++.|.....++...++ ..+..-.+.++-..|+..+|+..++.+++..|
T Consensus 75 ~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp----------- 143 (315)
T d2h6fa1 75 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA----------- 143 (315)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-----------
T ss_pred CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhh-----------
Confidence 446778888888888775 8999999998877654 45666778888899999999999999986321
Q ss_pred ccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHH
Q 000149 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVD 1503 (2037)
Q Consensus 1424 ~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~ 1503 (2037)
. -..++.-+|.-+...++ .+++++.|.+|++++|....+|++.|.-+.+.-
T Consensus 144 --------~-----------------n~~a~~~~~~~~~~~~~--~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~-- 194 (315)
T d2h6fa1 144 --------K-----------------NYHAWQHRQWVIQEFKL--WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT-- 194 (315)
T ss_dssp --------T-----------------CHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--
T ss_pred --------c-----------------chHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcc--
Confidence 1 03355555655555665 457788999999999999999999886543221
Q ss_pred HHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1504 ARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1504 ~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
. . .+ ......++..|.+++...+.+
T Consensus 195 --~-------~--~~---~~~~~~ai~~~~~al~~~P~~ 219 (315)
T d2h6fa1 195 --G-------Y--ND---RAVLEREVQYTLEMIKLVPHN 219 (315)
T ss_dssp --C-------S--CS---HHHHHHHHHHHHHHHHHSTTC
T ss_pred --c-------c--ch---hhhhHHhHHHHHHHHHhCCCc
Confidence 0 0 00 123457999999999988765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.58 E-value=1.9 Score=44.84 Aligned_cols=89 Identities=7% Similarity=-0.050 Sum_probs=61.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchh---------------hhhhH
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ---------------YKKTW 1185 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~---------------~~~~l 1185 (2037)
...|...|++++|..+|+++++.+|+......++=.|+.++|+++..+...+..+...+. ...+.
T Consensus 43 G~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~ 122 (192)
T d1hh8a_ 43 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEV 122 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHH
T ss_pred HHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHH
Confidence 455789999999999999999999999888888888999999998777655433211110 00011
Q ss_pred hHHHHHHHHhcCChhhHHHHhhcc
Q 000149 1186 CMQGVQAAWRLGRWDLMDEYLSGA 1209 (2037)
Q Consensus 1186 ~~~~~EAAWrlg~Wd~lee~l~~~ 1209 (2037)
......+-..+|+|+...+.+..+
T Consensus 123 ~~n~a~~~~~~~~~~~A~~~l~~A 146 (192)
T d1hh8a_ 123 LYNIAFMYAKKEEWKKAEEQLALA 146 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 111233556789998877766543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=88.91 E-value=0.62 Score=51.79 Aligned_cols=122 Identities=12% Similarity=0.068 Sum_probs=77.1
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccchhhhhhHhHHHHHHHHhcCChh
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~~~~l~~~~~EAAWrlg~Wd 1200 (2037)
.-.+-..|++++|.+.|+.+++..|++......+..+|...|+|+....+.+......|+....+..++ .+.-..+.++
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~-~ll~a~~~~~ 81 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR-HLVKAAQARK 81 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHhccccH
Confidence 334567899999999999999999999999999999999999999998888877766676544333222 1111122222
Q ss_pred hHHHHhhcccccCccccCCCCCcchHHHHHHHHHHHHcCCcchHHHHHHH
Q 000149 1201 LMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGV 1250 (2037)
Q Consensus 1201 ~lee~l~~~~~~gl~~~~~~~~~~f~~~l~kaLlal~~~d~~~f~~~I~~ 1250 (2037)
.. ....... ........+...+..+......++.++..+..+.
T Consensus 82 ~a---~~~~~~~----~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~ 124 (264)
T d1zbpa1 82 DF---AQGAATA----KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 124 (264)
T ss_dssp HH---TTSCCCE----ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HH---HHHhhhh----hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 21 1111110 0011223455555566666777777666555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=88.83 E-value=1.6 Score=43.80 Aligned_cols=113 Identities=11% Similarity=-0.048 Sum_probs=74.7
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhC
Q 000149 1386 EKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG 1465 (2037)
Q Consensus 1386 E~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~ 1465 (2037)
+.+.-+..+|+..+|+..-++++...+.. +.... .......+...+.+++-+|.-+...+
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~----------------~~~~~----~~~~~~~~~~~~~~~~Nla~~~~~l~ 81 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHT----------------EEWDD----QILLDKKKNIEISCNLNLATCYNKNK 81 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTC----------------TTCCC----HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcch----------------hhhhh----HHHHHhhhhHHHHHHhhHHHHHHHhc
Confidence 45566778899999999999888643210 00000 00001122233445555565555555
Q ss_pred CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1466 QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1466 ~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
+ .+++++.|.+|++++|++.++||.+|.-|..+- -...|+.+|-+++...+.+
T Consensus 82 ~--~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg----------------------~~~~A~~~~~~al~l~P~n 134 (153)
T d2fbna1 82 D--YPKAIDHASKVLKIDKNNVKALYKLGVANMYFG----------------------FLEEAKENLYKAASLNPNN 134 (153)
T ss_dssp C--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHHSTTC
T ss_pred c--cchhhhhhhccccccchhhhhhHHhHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCC
Confidence 4 788999999999999999999999998775431 1236899999999887654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.13 E-value=0.54 Score=43.52 Aligned_cols=74 Identities=11% Similarity=0.213 Sum_probs=52.9
Q ss_pred HHHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHHhccCChhHHHHHH
Q 000149 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2037)
Q Consensus 1045 lLa~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~r~~~~l~~qil~~ 1124 (2037)
.|+..+++-|.|..|+-++|+-++......++ .. ...++|. .....+
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~------~~------~~~~~l~---------------------~Lg~~~ 56 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEIS------TI------DKVSVLD---------------------YLSYAV 56 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC------SS------CHHHHHH---------------------HHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc------Cc------cHHHHHH---------------------HHhhHH
Confidence 68999999999999999999987654332111 00 0111211 123457
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhh
Q 000149 1125 KKSGNWAEVFTSCEQALQMEPTSVQRH 1151 (2037)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~ 1151 (2037)
.+.|++++|..+|+++|+..|++....
T Consensus 57 ~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 57 YQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 899999999999999999999987644
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.17 E-value=1.5 Score=42.53 Aligned_cols=101 Identities=16% Similarity=0.074 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhC
Q 000149 1386 EKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG 1465 (2037)
Q Consensus 1386 E~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~ 1465 (2037)
+....++..|+..+|+...+++++-.| . .+.++..+|..+...|
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p-------------------~-----------------~~~~~~~~a~~~~~~~ 52 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDP-------------------T-----------------NMTYITNQAAVYFEKG 52 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-------------------T-----------------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-------------------c-----------------cHHHHHhHHHHHHHcC
Confidence 456678999999999999999886321 1 0335666677776666
Q ss_pred CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccC
Q 000149 1466 QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRG 1539 (2037)
Q Consensus 1466 ~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g 1539 (2037)
+ .++++..|.+|++++|.+..+|+.+|+-|..+-..... ......|+..|-+++...
T Consensus 53 ~--~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~---------------~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 53 D--YNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK---------------EEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp C--HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH---------------TTCHHHHHHHHHHHHHHC
T ss_pred c--hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH---------------hCCHHHHHHHHHHHHhcC
Confidence 5 78899999999999999999999988776655421110 123457888888877543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.13 E-value=1.8 Score=48.19 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHc-CCchHHHHHHHHHhhcCCccccccccccccc
Q 000149 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWST-RRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2037)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~aLl~a~~~~--~p~~~iE~AKLLW~~-g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~ 1425 (2037)
...|+.++++.++.|.++.|...+.+|.... .+...+..|.+.|.. |+...|...++.+++.+|
T Consensus 134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p------------- 200 (308)
T d2onda1 134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG------------- 200 (308)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh-------------
Confidence 4579999999999999999999999987665 456788899988875 778889999998876321
Q ss_pred ccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch----HHHHHHHHhh
Q 000149 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW----EKGYFYMAKY 1496 (2037)
Q Consensus 1426 ~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~~s~~~~~~~i~~~Y~~A~~l~~~w----eK~~~~la~y 1496 (2037)
....+...++++....| +.+.+...|.+|++..+.. ..-|..|.+|
T Consensus 201 -----------------------~~~~~w~~y~~~~~~~g--~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~f 250 (308)
T d2onda1 201 -----------------------DIPEYVLAYIDYLSHLN--EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp -----------------------TCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred -----------------------hhHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 11345677788776555 5888999999999977632 3456666665
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.19 E-value=37 Score=39.60 Aligned_cols=151 Identities=9% Similarity=0.085 Sum_probs=95.5
Q ss_pred HHHHHHhhcccCccchhHHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhhc-ccHHHHHHHHHHHhHhhh-hhhhhh
Q 000149 149 LNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLLN-KRKAIRDAFCTQIGYFLQ-DTVLSS 225 (2037)
Q Consensus 149 ~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~~-~~r~vR~a~~~~~~~~~~-~~~~~~ 225 (2037)
=+.+.++|-++ +.+|+-....+|..+.+|.... ..+.. ..-+.++-.+|.+ .+..+|+.+..++..+-. ......
T Consensus 19 ip~L~~lL~~~-~~~v~~~A~~~l~~l~~~~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (529)
T d1jdha_ 19 IPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp HHHHHHHHTCS-CHHHHHHHHHHHHHHHTSHHHHHHHHTC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHhccHHHHHHHHh-hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 45577777554 5668877788888887764422 22221 2234455556554 567899999999988642 111122
Q ss_pred hccccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHHhCCCCcchHHHHHH
Q 000149 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASR 303 (2037)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~~~~~a~~ 303 (2037)
+++.| .+..+-+.+ ...|+.+++-.+.+++.+....+...+.+ .-++-.|++-|.++++.++..|..
T Consensus 97 i~~~g----------~i~~Li~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~ 165 (529)
T d1jdha_ 97 IFKSG----------GIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 165 (529)
T ss_dssp HHHTT----------HHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred HHHCC----------CHHHHHHHh-CCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHH
Confidence 22222 344455544 34778899999999999854333222222 224556899999999999999999
Q ss_pred HHHHHHhhh
Q 000149 304 LIRKSCFFH 312 (2037)
Q Consensus 304 ~i~~la~~~ 312 (2037)
-+..++...
T Consensus 166 ~L~~l~~~~ 174 (529)
T d1jdha_ 166 CLQILAYGN 174 (529)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhhhh
Confidence 999887653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.53 E-value=0.95 Score=45.24 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHH
Q 000149 1450 IAKTLLLYSRWIHYT-GQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDV 1528 (2037)
Q Consensus 1450 ~Ak~~Ll~akwl~~s-~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a 1528 (2037)
.|.+++.++.|-... .....+++++.|++|++++|++..+|+.+|.-|..+-.- .+ ...........|
T Consensus 37 ~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~----------~~-~~~~~~~~~~~A 105 (145)
T d1zu2a1 37 WGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL----------TP-DETEAKHNFDLA 105 (145)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH----------CC-CHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccc----------hh-hHHHHHHhHHHh
Confidence 355555555542100 011257889999999999999999999999877554310 00 011112345679
Q ss_pred HHHHHHHhccCCcc
Q 000149 1529 LLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1529 i~~Yl~sl~~g~~~ 1542 (2037)
+.+|-+++...+.+
T Consensus 106 ~~~~~kal~l~P~~ 119 (145)
T d1zu2a1 106 TQFFQQAVDEQPDN 119 (145)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred hhhhhcccccCCCH
Confidence 99999999888765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.34 E-value=10 Score=41.26 Aligned_cols=193 Identities=8% Similarity=-0.074 Sum_probs=105.8
Q ss_pred HHHHHHhchhHHHHHHHHHHHhhhhcCCCCCccccCCCCChhhHHHHHHHHhhCCChHHHHHHHHH----hc-cCChhH-
Q 000149 1046 LARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL----HK-SLSLQD- 1119 (2037)
Q Consensus 1046 La~aA~~c~ayaRAL~ylE~~~~~~~~~~n~~~~~~~~~~~~~~~~L~~IYa~LdEpDg~~Gi~~~----r~-~~~l~~- 1119 (2037)
.+..=..++.|.+|+.++++.+.-.....++.. .-..+..+..+|..++++|.+...... .. ......
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~------~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 116 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDE------AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHH------HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence 344445788999999999986543221111100 113577888899999999986665431 11 111111
Q ss_pred -----H-HHHHHh-hcCHHHHHHHHHHHHccCCC---c---hhhhhhHHHHHHhccChHHHHHHhhhhhccchhh-----
Q 000149 1120 -----E-LLSNKK-SGNWAEVFTSCEQALQMEPT---S---VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY----- 1181 (2037)
Q Consensus 1120 -----q-il~~E~-~G~W~~A~~~YE~~Lq~~p~---~---~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p~~----- 1181 (2037)
. .-.++. .|+|++|..+|+++++..+. . ......+-.++..+|+|+..+...+......+..
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 196 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh
Confidence 1 122444 69999999999999864321 1 1223456678889999998877766543322211
Q ss_pred h-hhHhHHHHHHHHhcCChhhHHHHhhcccccCccccCCCCCcchHHH-HHHHHHHHHcCCcchHHHHHH
Q 000149 1182 K-KTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMD-VAKILQAMMKKDHFSVSDKIG 1249 (2037)
Q Consensus 1182 ~-~~l~~~~~EAAWrlg~Wd~lee~l~~~~~~gl~~~~~~~~~~f~~~-l~kaLlal~~~d~~~f~~~I~ 1249 (2037)
. ........-+--..|+++...+.+....... ..-..+.+.. +...+.++..+|.+.+.+.|.
T Consensus 197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~-----~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~ 261 (290)
T d1qqea_ 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSED-----PNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261 (290)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 1 0111112223335688888877766653310 0001111222 333445666777777777664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=83.68 E-value=2.8 Score=42.46 Aligned_cols=115 Identities=11% Similarity=0.005 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhhhhHHHHHHHHHHHHH
Q 000149 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2037)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~~~Ak~~Ll~akwl~ 1462 (2037)
..-|.+..++..|+..+|+...++++.-.+.. ... ............+.+++-+|.-+.
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~-------------------~~~--~~~~~~~~~~~~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEME-------------------YGL--SEKESKASESFLLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-------------------CSC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------------hcc--chhhhhhcchhHHHHHHhHHHHHH
Confidence 34577888899999999999988887632110 000 000111122234455555565555
Q ss_pred HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHHhccCCcc
Q 000149 1463 YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2037)
Q Consensus 1463 ~s~~~~~~~i~~~Y~~A~~l~~~weK~~~~la~y~d~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~Yl~sl~~g~~~ 1542 (2037)
..+ ..++++..|.+|++++|...++|+..|.-|..+- -...|+.+|-+++...+++
T Consensus 76 ~l~--~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~----------------------~~~~A~~~~~~al~l~P~n 131 (168)
T d1kt1a1 76 KLR--EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN----------------------EFESAKGDFEKVLEVNPQN 131 (168)
T ss_dssp HTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHSCTTC
T ss_pred Hhh--hcccchhhhhhhhhcccchHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCC
Confidence 544 4889999999999999999999999998653221 1246899999999987665
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.58 E-value=1.1 Score=45.67 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=49.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccch
Q 000149 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2037)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~Lgq~~~ll~~~~gl~~~~p 1179 (2037)
...|.+.|+|++|...|+++++..|++...+.++=.|+.++|+++..+...+..+...|
T Consensus 84 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 84 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 45688999999999999999999999999988888999999999987766655444334
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.47 E-value=5.8 Score=42.90 Aligned_cols=149 Identities=11% Similarity=0.029 Sum_probs=96.7
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHh-hcccHHHHHHHHHHHhHhhhhhh-hhhhc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLL-LNKRKAIRDAFCTQIGYFLQDTV-LSSLF 227 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~-~~~~r~vR~a~~~~~~~~~~~~~-~~~~~ 227 (2037)
+...++..++.+|+.....+|..+..|.... ..+. ...+..|-.++ .+++..+|..++.++..+..+.- ....|
T Consensus 63 ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~--~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 140 (264)
T d1xqra1 63 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG--LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF 140 (264)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHH
Confidence 3455566778899999999999999986532 1111 23444444455 46788999999999999762211 11111
Q ss_pred cccccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHHhCCCCcchHHHHHHHH
Q 000149 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNASRLI 305 (2037)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~~~~~a~~~i 305 (2037)
. ....+..+-+.+. ..|+.+++-.+-.++.+........+.+.- ++-.|+.-|.++++.++..|..-|
T Consensus 141 ~---------~~~gi~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL 210 (264)
T d1xqra1 141 L---------RLDGFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGAL 210 (264)
T ss_dssp H---------HTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHH
T ss_pred H---------HhhhhhHHHHHHh-cCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0 1112344445443 467779998888888876544333333322 245578888999999999999999
Q ss_pred HHHHhhh
Q 000149 306 RKSCFFH 312 (2037)
Q Consensus 306 ~~la~~~ 312 (2037)
.+++..+
T Consensus 211 ~~L~~~~ 217 (264)
T d1xqra1 211 CSLVTDF 217 (264)
T ss_dssp HHHHTTC
T ss_pred HHHHhcC
Confidence 9987544
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=81.50 E-value=7.8 Score=41.07 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=84.7
Q ss_pred HHHhhcccCccchhHHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccccc
Q 000149 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2037)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2037)
++++|- ..+..|+.+.+..|..+ ++.++ +.-+..++.|++..||.+++..+..+-
T Consensus 24 L~~~L~-d~~~~vR~~A~~~L~~~---~~~~~--------~~~l~~~l~d~~~~vr~~a~~aL~~l~------------- 78 (276)
T d1oyza_ 24 LFRLLD-DHNSLKRISSARVLQLR---GGQDA--------VRLAIEFCSDKNYIRRDIGAFILGQIK------------- 78 (276)
T ss_dssp HHHHTT-CSSHHHHHHHHHHHHHH---CCHHH--------HHHHHHHHTCSSHHHHHHHHHHHHHSC-------------
T ss_pred HHHHhc-CCCHHHHHHHHHHHHhh---CCHhH--------HHHHHHHHcCCCHHHHHHHHHHHHHhc-------------
Confidence 455554 57779999999999876 33221 223344559999999999999887732
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 000149 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLI 305 (2037)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~~~~~a~~~i 305 (2037)
.........+..+...+..-+|+.|..+.+.+++.++... .......+-.|...+..+++.++..|..-+
T Consensus 79 -~~~~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l 148 (276)
T d1oyza_ 79 -ICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN---PIYSPKIVEQSQITAFDKSTNVRRATAFAI 148 (276)
T ss_dssp -CCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -cccccccchHHHHHHHHhcCCChhHHHHHHHHHHHHcccc---chhhHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 1122334445555666666788999999999999985432 233334556677888888888887775543
|